Query 014774
Match_columns 419
No_of_seqs 171 out of 2312
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 08:23:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.8 3.3E-22 7.1E-27 178.8 1.0 331 3-389 74-462 (483)
2 KOG2120 SCF ubiquitin ligase, 99.8 1.4E-19 3.1E-24 155.3 2.9 263 2-287 99-390 (419)
3 KOG4341 F-box protein containi 99.3 3.5E-13 7.5E-18 121.5 -2.5 243 126-387 137-409 (483)
4 PF12937 F-box-like: F-box-lik 98.9 1.7E-09 3.7E-14 69.1 4.3 35 1-36 1-35 (47)
5 PLN00113 leucine-rich repeat r 98.9 6.7E-09 1.5E-13 111.2 11.0 59 126-185 139-199 (968)
6 PLN00113 leucine-rich repeat r 98.9 6.9E-09 1.5E-13 111.1 10.7 211 70-293 69-293 (968)
7 KOG4194 Membrane glycoprotein 98.8 1.3E-09 2.9E-14 102.7 -0.2 60 124-184 170-231 (873)
8 KOG2120 SCF ubiquitin ligase, 98.7 2.6E-09 5.6E-14 92.8 -0.4 196 128-382 186-390 (419)
9 KOG4194 Membrane glycoprotein 98.7 5.3E-09 1.2E-13 98.7 0.5 197 117-331 187-405 (873)
10 cd00116 LRR_RI Leucine-rich re 98.6 7.2E-08 1.6E-12 89.7 7.3 60 125-185 49-119 (319)
11 PLN03210 Resistant to P. syrin 98.6 2.5E-07 5.3E-12 100.1 11.3 13 375-387 865-877 (1153)
12 KOG1909 Ran GTPase-activating 98.6 4.4E-08 9.6E-13 87.1 4.3 67 258-330 156-225 (382)
13 PLN03210 Resistant to P. syrin 98.6 6.6E-07 1.4E-11 96.9 13.8 100 125-229 632-737 (1153)
14 cd00116 LRR_RI Leucine-rich re 98.6 6.1E-08 1.3E-12 90.2 4.7 236 123-391 19-290 (319)
15 PF00646 F-box: F-box domain; 98.4 9.8E-08 2.1E-12 61.3 1.9 35 2-37 4-38 (48)
16 KOG0444 Cytoskeletal regulator 98.4 3.1E-08 6.8E-13 94.4 -2.6 243 123-389 74-349 (1255)
17 smart00256 FBOX A Receptor for 98.3 5.5E-07 1.2E-11 55.6 3.4 32 4-36 1-32 (41)
18 KOG1947 Leucine rich repeat pr 98.3 8.2E-08 1.8E-12 94.6 -0.8 142 126-293 213-371 (482)
19 KOG1909 Ran GTPase-activating 98.3 1.4E-06 3E-11 77.8 6.4 212 145-391 88-310 (382)
20 KOG1947 Leucine rich repeat pr 98.1 1.2E-06 2.5E-11 86.5 2.4 249 65-364 183-442 (482)
21 KOG0444 Cytoskeletal regulator 98.0 1.6E-07 3.4E-12 89.8 -6.1 162 126-293 125-300 (1255)
22 KOG3207 Beta-tubulin folding c 98.0 1.9E-06 4.1E-11 79.1 0.4 39 146-184 143-182 (505)
23 KOG3207 Beta-tubulin folding c 97.9 2.7E-06 5.9E-11 78.1 0.9 148 126-293 171-335 (505)
24 KOG3665 ZYG-1-like serine/thre 97.8 1.7E-05 3.6E-10 80.3 4.0 146 235-387 121-283 (699)
25 PF14580 LRR_9: Leucine-rich r 97.7 4.1E-05 8.9E-10 63.6 4.8 91 120-229 34-125 (175)
26 KOG0618 Serine/threonine phosp 97.7 9.6E-06 2.1E-10 81.2 0.1 219 146-390 238-487 (1081)
27 PF14580 LRR_9: Leucine-rich r 97.5 9.1E-05 2E-09 61.6 3.8 127 217-359 19-150 (175)
28 PRK15387 E3 ubiquitin-protein 97.5 0.00028 6.2E-09 72.1 8.0 13 149-161 242-254 (788)
29 PRK15387 E3 ubiquitin-protein 97.4 0.00032 6.9E-09 71.7 6.9 35 126-162 241-275 (788)
30 KOG3665 ZYG-1-like serine/thre 97.4 0.00019 4.2E-09 72.7 4.9 152 126-291 121-282 (699)
31 PRK15370 E3 ubiquitin-protein 97.3 0.00028 6.1E-09 72.3 5.7 176 126-330 198-379 (754)
32 PRK15370 E3 ubiquitin-protein 97.1 0.0012 2.5E-08 67.9 7.0 20 311-330 408-427 (754)
33 COG5238 RNA1 Ran GTPase-activa 97.0 0.0018 4E-08 56.4 6.3 36 147-182 28-66 (388)
34 KOG1259 Nischarin, modulator o 96.9 0.0012 2.5E-08 58.4 4.6 209 126-358 181-408 (490)
35 PF13855 LRR_8: Leucine rich r 96.8 0.00054 1.2E-08 46.2 1.4 58 127-185 1-60 (61)
36 KOG2982 Uncharacterized conser 96.4 0.00094 2E-08 58.9 0.6 147 129-292 47-207 (418)
37 KOG1259 Nischarin, modulator o 96.3 0.013 2.8E-07 52.0 6.6 117 258-393 283-413 (490)
38 PF12799 LRR_4: Leucine Rich r 96.0 0.0084 1.8E-07 37.2 3.1 35 149-185 1-35 (44)
39 KOG0617 Ras suppressor protein 95.9 0.00027 5.8E-09 57.1 -5.1 56 125-182 31-87 (264)
40 KOG4237 Extracellular matrix p 95.6 0.0005 1.1E-08 62.9 -4.9 72 118-190 56-131 (498)
41 PF12799 LRR_4: Leucine Rich r 95.6 0.018 3.9E-07 35.7 3.3 37 127-163 1-38 (44)
42 PF13855 LRR_8: Leucine rich r 95.5 0.017 3.7E-07 38.8 3.3 39 122-160 20-60 (61)
43 KOG2982 Uncharacterized conser 95.4 0.017 3.7E-07 51.2 3.7 111 148-293 44-155 (418)
44 KOG2997 F-box protein FBX9 [Ge 95.4 0.011 2.3E-07 52.6 2.4 36 1-36 107-146 (366)
45 KOG3864 Uncharacterized conser 95.4 0.0031 6.6E-08 52.6 -0.9 48 146-193 122-170 (221)
46 smart00367 LRR_CC Leucine-rich 95.3 0.0055 1.2E-07 33.1 0.3 21 173-193 1-21 (26)
47 smart00367 LRR_CC Leucine-rich 95.3 0.015 3.3E-07 31.4 2.0 24 148-171 1-25 (26)
48 PLN03215 ascorbic acid mannose 95.2 0.016 3.6E-07 53.8 3.1 37 2-38 5-41 (373)
49 KOG0472 Leucine-rich repeat pr 95.1 0.00014 3E-09 66.6 -10.4 57 126-184 67-124 (565)
50 KOG3864 Uncharacterized conser 95.0 0.0068 1.5E-07 50.6 0.1 73 117-190 115-192 (221)
51 KOG0281 Beta-TrCP (transducin 94.8 0.018 3.9E-07 51.7 2.1 35 1-36 75-113 (499)
52 COG4886 Leucine-rich repeat (L 94.3 0.032 6.9E-07 53.5 2.9 60 126-187 115-176 (394)
53 KOG4658 Apoptotic ATPase [Sign 94.3 0.099 2.1E-06 55.0 6.6 61 128-188 524-585 (889)
54 PF13516 LRR_6: Leucine Rich r 94.0 0.066 1.4E-06 28.1 2.5 23 148-170 1-23 (24)
55 KOG2739 Leucine-rich acidic nu 94.0 0.029 6.2E-07 48.9 1.6 61 126-186 42-103 (260)
56 KOG1644 U2-associated snRNP A' 93.9 0.19 4.1E-06 42.3 6.1 91 120-227 57-150 (233)
57 KOG0617 Ras suppressor protein 93.2 0.015 3.2E-07 47.4 -1.3 15 375-389 169-183 (264)
58 KOG0618 Serine/threonine phosp 93.2 0.022 4.7E-07 58.2 -0.5 62 120-183 376-439 (1081)
59 KOG0472 Leucine-rich repeat pr 93.1 0.01 2.2E-07 54.8 -2.6 33 235-267 434-466 (565)
60 PF07723 LRR_2: Leucine Rich R 92.7 0.15 3.2E-06 27.5 2.6 25 150-174 1-26 (26)
61 KOG1644 U2-associated snRNP A' 92.7 0.26 5.6E-06 41.5 5.2 112 126-271 41-152 (233)
62 KOG2123 Uncharacterized conser 91.3 0.1 2.2E-06 46.0 1.4 88 312-416 35-127 (388)
63 PRK15386 type III secretion pr 91.1 0.48 1E-05 45.0 5.7 130 121-267 46-185 (426)
64 KOG2123 Uncharacterized conser 89.0 0.06 1.3E-06 47.4 -1.8 79 236-328 19-98 (388)
65 smart00368 LRR_RI Leucine rich 88.0 0.57 1.2E-05 25.7 2.3 24 149-172 2-25 (28)
66 PF13013 F-box-like_2: F-box-l 87.4 0.48 1E-05 35.8 2.3 29 1-30 22-50 (109)
67 PLN03150 hypothetical protein; 87.0 0.85 1.8E-05 46.6 4.7 57 129-186 420-478 (623)
68 PRK15386 type III secretion pr 86.8 1.7 3.6E-05 41.4 6.1 124 95-245 52-186 (426)
69 COG5238 RNA1 Ran GTPase-activa 85.1 3.2 6.8E-05 36.9 6.4 122 63-185 85-225 (388)
70 KOG1859 Leucine-rich repeat pr 84.7 0.053 1.2E-06 54.1 -4.9 53 217-269 232-289 (1096)
71 KOG2739 Leucine-rich acidic nu 84.2 0.72 1.6E-05 40.4 2.2 67 121-187 59-129 (260)
72 PLN03150 hypothetical protein; 83.1 2 4.4E-05 43.9 5.3 65 122-187 437-503 (623)
73 KOG0274 Cdc4 and related F-box 81.8 0.62 1.4E-05 46.3 1.0 35 1-36 108-142 (537)
74 COG4886 Leucine-rich repeat (L 81.2 1 2.2E-05 43.2 2.2 57 128-186 141-198 (394)
75 PF13504 LRR_7: Leucine rich r 78.8 1.6 3.5E-05 20.7 1.4 9 151-159 3-11 (17)
76 PF08387 FBD: FBD; InterPro: 78.6 0.79 1.7E-05 29.3 0.4 37 349-387 14-50 (51)
77 smart00579 FBD domain in FBox 76.8 2 4.2E-05 29.8 2.0 58 349-410 5-62 (72)
78 KOG0531 Protein phosphatase 1, 75.5 1.9 4.2E-05 41.6 2.3 106 256-391 92-198 (414)
79 KOG1859 Leucine-rich repeat pr 72.8 0.39 8.4E-06 48.3 -3.2 32 129-160 234-265 (1096)
80 KOG0531 Protein phosphatase 1, 65.0 2.5 5.5E-05 40.8 0.6 60 123-185 114-173 (414)
81 PF13306 LRR_5: Leucine rich r 64.8 17 0.00037 28.0 5.3 56 123-182 8-66 (129)
82 KOG4237 Extracellular matrix p 59.6 6.6 0.00014 36.9 2.2 64 122-186 269-334 (498)
83 PF00560 LRR_1: Leucine Rich R 58.4 8.8 0.00019 19.4 1.6 11 151-161 2-12 (22)
84 KOG4658 Apoptotic ATPase [Sign 56.6 7.1 0.00015 41.5 2.1 16 347-362 715-730 (889)
85 KOG3926 F-box proteins [Amino 54.1 8.7 0.00019 33.9 1.9 33 1-33 202-234 (332)
86 smart00369 LRR_TYP Leucine-ric 37.7 23 0.00049 18.5 1.3 12 149-160 2-13 (26)
87 smart00370 LRR Leucine-rich re 37.7 23 0.00049 18.5 1.3 12 149-160 2-13 (26)
88 KOG0532 Leucine-rich repeat (L 35.1 2.8 6.1E-05 41.1 -4.3 38 147-186 141-178 (722)
89 PF08004 DUF1699: Protein of u 31.9 22 0.00047 27.4 0.8 36 349-390 17-52 (131)
90 KOG3763 mRNA export factor TAP 26.3 38 0.00083 33.4 1.6 39 146-184 215-254 (585)
91 KOG4408 Putative Mg2+ and Co2+ 25.8 18 0.0004 33.0 -0.6 37 2-39 9-45 (386)
92 smart00365 LRR_SD22 Leucine-ri 24.8 52 0.0011 17.6 1.3 13 149-161 2-14 (26)
93 KOG3763 mRNA export factor TAP 21.4 94 0.002 30.9 3.1 62 120-181 236-308 (585)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.84 E-value=3.3e-22 Score=178.83 Aligned_cols=331 Identities=17% Similarity=0.221 Sum_probs=181.8
Q ss_pred CCcHHHHHHHHhCCCCHHHHHHhhccchhHHHhh---ccCCeeeecCCCCCCCCCCCChHHHHHHHHHhCCCcceEEEec
Q 014774 3 SLPDAIVQYILSHMKNARDVALCNCVSKRWKESI---PYLKSLYFPRNSFDNQSCDNSPDDIVLKMIYSIVCLEELVVYT 79 (419)
Q Consensus 3 ~LPd~ll~~I~~~L~~~~~~~~~~~vsk~w~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~~ 79 (419)
.||+|++..||++|+ ++.+.+++++|+.|.... ..|+++++. .|+.+-..+ .+..++.+
T Consensus 74 ~LPpEl~lkvFS~LD-tksl~r~a~~c~~~n~~AlD~~~~q~idL~--t~~rDv~g~----VV~~~~~R----------- 135 (483)
T KOG4341|consen 74 SLPPELLLKVFSMLD-TKSLCRAAQCCTMWNKLALDGSCWQHIDLF--TFQRDVDGG----VVENMISR----------- 135 (483)
T ss_pred cCCHHHHHHHHHHHh-HHHHHHHHHHHHHhhhhhhccccceeeehh--cchhcCCCc----ceehHhhh-----------
Confidence 589999999999999 999999999999999865 456666652 222111111 12222222
Q ss_pred CCCcchHHHHHHHhcCCceEEEEEecCccccccccCCCcccccccC-CCCccEEEecCccccCCccc----ccCCCccEE
Q 014774 80 PFSKAGLDSWLMLAGSTLKHLELRMDNLADYQGCLENPSKLDCISR-AKNLESLKLWGVLMVSSPKW----DVFHKLQNL 154 (419)
Q Consensus 80 ~~~~~~~~~w~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~-~~~L~~L~L~~~~~~~~~~~----~~~~~L~~L 154 (419)
.+..|+.|.+++.. .+.+..+.-+.. |||+++|.+.+|..+++... ..|++|+.|
T Consensus 136 -------------cgg~lk~LSlrG~r-------~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l 195 (483)
T KOG4341|consen 136 -------------CGGFLKELSLRGCR-------AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHL 195 (483)
T ss_pred -------------hccccccccccccc-------cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhh
Confidence 12334444433221 123444444444 88888888888887766632 567888888
Q ss_pred EecCee-eChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEecccCce---------eeecCCCccEEEe
Q 014774 155 EIVGAR-LEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCS---------LSVSCPKIQFLEV 224 (419)
Q Consensus 155 ~L~~~~-~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~---------l~~~~~~L~~L~l 224 (419)
++..|. +++..+..+...||+|+.+++++|+.+...+++.....+..++.+...+|. ...+++-+.++++
T Consensus 196 ~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 196 NLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNL 275 (483)
T ss_pred hhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccch
Confidence 888877 888888888888888888888888888777777766555555555444441 1223333444443
Q ss_pred cCc--------------------------cc------eeec-cCCcCceeEeecccceEE---EeccCCCCCcCEeeeCC
Q 014774 225 QGC--------------------------SW------IRVQ-ETNCLRNLSISNNAGRVY---MVDFGKLAALESLTLRG 268 (419)
Q Consensus 225 ~~~--------------------------~~------~~l~-~~~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~ 268 (419)
.+| .. ..++ ++.+|+.+.+..+..+-. ..-..+++.|+.+++.+
T Consensus 276 ~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~ 355 (483)
T KOG4341|consen 276 QHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEE 355 (483)
T ss_pred hhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccc
Confidence 333 21 0111 133444444433311100 00112344555555521
Q ss_pred ---CCchHHHHHHHhccCCcccEEEeee-eecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhccccccccc
Q 014774 269 ---VQWCWDAISKMLYWASEVKHLYMKV-EFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVES 344 (419)
Q Consensus 269 ---~~~~~~~l~~l~~~~~~L~~L~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~ 344 (419)
.++ ..+..+..+||.|+.+.++. ...+| +|++.+ .....+...|+.+++.++....-. .+ ..
T Consensus 356 ~~~~~d--~tL~sls~~C~~lr~lslshce~itD-~gi~~l-----~~~~c~~~~l~~lEL~n~p~i~d~---~L---e~ 421 (483)
T KOG4341|consen 356 CGLITD--GTLASLSRNCPRLRVLSLSHCELITD-EGIRHL-----SSSSCSLEGLEVLELDNCPLITDA---TL---EH 421 (483)
T ss_pred cceehh--hhHhhhccCCchhccCChhhhhhhhh-hhhhhh-----hhccccccccceeeecCCCCchHH---HH---HH
Confidence 122 23444455555555555543 33333 232211 111123334555555544321000 00 11
Q ss_pred ccccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhh
Q 014774 345 GFVIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRIL 389 (419)
Q Consensus 345 ~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~ 389 (419)
-..|++||.+++-.|.+++. +.+..+..++|+++.......
T Consensus 422 l~~c~~Leri~l~~~q~vtk----~~i~~~~~~lp~i~v~a~~a~ 462 (483)
T KOG4341|consen 422 LSICRNLERIELIDCQDVTK----EAISRFATHLPNIKVHAYFAP 462 (483)
T ss_pred HhhCcccceeeeechhhhhh----hhhHHHHhhCccceehhhccC
Confidence 12478888888888888874 456666778888877666543
No 2
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.4e-19 Score=155.28 Aligned_cols=263 Identities=21% Similarity=0.266 Sum_probs=158.5
Q ss_pred CCCcHHHHHHHHhCCCCHHHHHHhhccchhHHHhh---ccCCeeeecCCCCCCCCCCCChHHHHHHHHHhCCCcceEEEe
Q 014774 2 DSLPDAIVQYILSHMKNARDVALCNCVSKRWKESI---PYLKSLYFPRNSFDNQSCDNSPDDIVLKMIYSIVCLEELVVY 78 (419)
Q Consensus 2 ~~LPd~ll~~I~~~L~~~~~~~~~~~vsk~w~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l~ 78 (419)
+.|||||+..||+.|+ .+++.+++.|||||+++. +.|..++....... +....+++++. +..+++.
T Consensus 99 ~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~--------p~~l~~l~~rg--V~v~Rla 167 (419)
T KOG2120|consen 99 DSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIH--------PDVLGRLLSRG--VIVFRLA 167 (419)
T ss_pred ccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhccccccceeeeccCCCccC--------hhHHHHHHhCC--eEEEEcc
Confidence 5799999999999999 999999999999999976 56777777443222 23444554432 2233321
Q ss_pred cCCCcch-HHHHHHHhcCCceEEEEEecCccccccccCCCcccc-cccCCCCccEEEecCccccCCc---ccccCCCccE
Q 014774 79 TPFSKAG-LDSWLMLAGSTLKHLELRMDNLADYQGCLENPSKLD-CISRAKNLESLKLWGVLMVSSP---KWDVFHKLQN 153 (419)
Q Consensus 79 ~~~~~~~-~~~w~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~-~l~~~~~L~~L~L~~~~~~~~~---~~~~~~~L~~ 153 (419)
..+-..+ +.....-....+++++++....+ ...+. .+..|.+|+.|.|.|... +|+ .+....+|+.
T Consensus 168 r~~~~~prlae~~~~frsRlq~lDLS~s~it--------~stl~~iLs~C~kLk~lSlEg~~L-dD~I~~~iAkN~~L~~ 238 (419)
T KOG2120|consen 168 RSFMDQPRLAEHFSPFRSRLQHLDLSNSVIT--------VSTLHGILSQCSKLKNLSLEGLRL-DDPIVNTIAKNSNLVR 238 (419)
T ss_pred hhhhcCchhhhhhhhhhhhhHHhhcchhhee--------HHHHHHHHHHHHhhhhcccccccc-CcHHHHHHhcccccee
Confidence 1111111 11111112255778877755443 22333 345599999999988653 444 2467789999
Q ss_pred EEecCee-eChHHHHHHHhcCCCCcEEEccCCCCccccccccc-ccccceeeEecccCce----------eeecCCCccE
Q 014774 154 LEIVGAR-LEDPALSTALRACPNLTNLLLLGCEGVRSVSIELP-HLEQCKLDFYGLGNCS----------LSVSCPKIQF 221 (419)
Q Consensus 154 L~L~~~~-~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~-~l~~~~L~~l~~~~~~----------l~~~~~~L~~ 221 (419)
|+|++|. ++..+++-++.+|..|.+|++++|...++. +++. .--..++..+++++|. +...+|.|..
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~ 317 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVH 317 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceee
Confidence 9999998 999999999999999999999999766553 2221 1111244455555441 3345677777
Q ss_pred EEecCccce------eeccCCcCceeEeecccceEE--EeccCCCCCcCEeeeC-CCCchHHHHHHHhccCCccc
Q 014774 222 LEVQGCSWI------RVQETNCLRNLSISNNAGRVY--MVDFGKLAALESLTLR-GVQWCWDAISKMLYWASEVK 287 (419)
Q Consensus 222 L~l~~~~~~------~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~-~~~~~~~~l~~l~~~~~~L~ 287 (419)
|+++++... .+-+.+.|++++++.|-+... ...+...|.|.+|++. .+.| .+++-+...||+|+
T Consensus 318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsd--t~mel~~e~~~~lk 390 (419)
T KOG2120|consen 318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSD--TTMELLKEMLSHLK 390 (419)
T ss_pred eccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCc--hHHHHHHHhCcccc
Confidence 777766431 111245566666655421110 1123345666666663 2344 45555555555554
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.25 E-value=3.5e-13 Score=121.51 Aligned_cols=243 Identities=18% Similarity=0.234 Sum_probs=168.0
Q ss_pred CCCccEEEecCccccCCcc----cccCCCccEEEecCee-eChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccc
Q 014774 126 AKNLESLKLWGVLMVSSPK----WDVFHKLQNLEIVGAR-LEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQC 200 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~~----~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~ 200 (419)
-..|++|.++||..+.+.. ...||+++.|.+.+|. ++|..+..+...|++|+.|++.+|..+++..++..+..|.
T Consensus 137 gg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 137 GGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred ccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 3489999999998776553 2789999999999998 9999999999999999999999999999998888888899
Q ss_pred eeeEecccCce---------eeecCCCccEEEecCccce------ee-ccCCcCceeEeecccceEEEec----cCCCCC
Q 014774 201 KLDFYGLGNCS---------LSVSCPKIQFLEVQGCSWI------RV-QETNCLRNLSISNNAGRVYMVD----FGKLAA 260 (419)
Q Consensus 201 ~L~~l~~~~~~---------l~~~~~~L~~L~l~~~~~~------~l-~~~~~L~~L~l~~~~~~~~~~~----~~~~~~ 260 (419)
+|+.+++++|. +.-.+..++.+...||.-. .. .++..+..+++.++ ..+.+.+ ..++..
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c-~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHC-NQLTDEDLWLIACGCHA 295 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhh-ccccchHHHHHhhhhhH
Confidence 99999999884 1223444566655665321 11 12444555554443 1111111 123778
Q ss_pred cCEeeeCCCCc-hHHHHHHHhccCCcccEEEeee-eecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhH---hhhh
Q 014774 261 LESLTLRGVQW-CWDAISKMLYWASEVKHLYMKV-EFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFA---ALCQ 335 (419)
Q Consensus 261 L~~L~l~~~~~-~~~~l~~l~~~~~~L~~L~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~l~~ 335 (419)
|+.|+.++.++ ....+.++.+.|++|+.+-+.. +..+| ..+..+..+++.|+.+++.++... .+.+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd---------~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSD---------RGFTMLGRNCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhh---------hhhhhhhcCChhhhhhcccccceehhhhHhh
Confidence 88888844333 1166888889999999999965 44444 456777788999999998865431 1211
Q ss_pred cccccccccccccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHH
Q 014774 336 KNSLKNVESGFVIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIR 387 (419)
Q Consensus 336 ~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~ 387 (419)
....||.|+.+.++.|..++|+|+... .........|+.++++
T Consensus 367 --------ls~~C~~lr~lslshce~itD~gi~~l-~~~~c~~~~l~~lEL~ 409 (483)
T KOG4341|consen 367 --------LSRNCPRLRVLSLSHCELITDEGIRHL-SSSSCSLEGLEVLELD 409 (483)
T ss_pred --------hccCCchhccCChhhhhhhhhhhhhhh-hhccccccccceeeec
Confidence 123589999999999999998764332 2223333444444444
No 4
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.91 E-value=1.7e-09 Score=69.09 Aligned_cols=35 Identities=34% Similarity=0.609 Sum_probs=31.5
Q ss_pred CCCCcHHHHHHHHhCCCCHHHHHHhhccchhHHHhh
Q 014774 1 MDSLPDAIVQYILSHMKNARDVALCNCVSKRWKESI 36 (419)
Q Consensus 1 ~~~LPd~ll~~I~~~L~~~~~~~~~~~vsk~w~~~~ 36 (419)
|+.||+|++.+||+||+ .+|+.++++|||+|+.+.
T Consensus 1 i~~LP~Eil~~If~~L~-~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLD-PRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHH
Confidence 67899999999999998 999999999999999976
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.90 E-value=6.7e-09 Score=111.22 Aligned_cols=59 Identities=25% Similarity=0.340 Sum_probs=30.3
Q ss_pred CCCccEEEecCcccc-CCc-ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCC
Q 014774 126 AKNLESLKLWGVLMV-SSP-KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCE 185 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~-~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~ 185 (419)
.++|++|+|.++... ..+ .+..+++|+.|++++|.+... +...+.++++|++|++.+|.
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQ 199 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCC
Confidence 456666666655432 112 345566666666666653321 11123456666666666554
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.89 E-value=6.9e-09 Score=111.12 Aligned_cols=211 Identities=15% Similarity=0.136 Sum_probs=114.9
Q ss_pred CCcceEEEecCCCcchHHHHHHHhcCCceEEEEEecCccccccccCCCccccccc-CCCCccEEEecCccccCCcccccC
Q 014774 70 VCLEELVVYTPFSKAGLDSWLMLAGSTLKHLELRMDNLADYQGCLENPSKLDCIS-RAKNLESLKLWGVLMVSSPKWDVF 148 (419)
Q Consensus 70 ~~L~~l~l~~~~~~~~~~~w~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~L~~~~~~~~~~~~~~ 148 (419)
.+++.++++...-.+..+..+ ...+.|+.|++...... ......+. .+++|++|+|+++..........+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~-~~l~~L~~L~Ls~n~~~--------~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l 139 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAI-FRLPYIQTINLSNNQLS--------GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI 139 (968)
T ss_pred CcEEEEEecCCCccccCChHH-hCCCCCCEEECCCCccC--------CcCChHHhccCCCCCEEECcCCccccccCcccc
Confidence 356777774321111111111 12467888877643221 11112233 588999999988754322233568
Q ss_pred CCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEecccCceee-------ecCCCccE
Q 014774 149 HKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSLS-------VSCPKIQF 221 (419)
Q Consensus 149 ~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l~-------~~~~~L~~ 221 (419)
++|+.|+|++|.++.. +...+.++++|++|++++|...+...-.. ....+|+.+++.++.+. ..+++|+.
T Consensus 140 ~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~~--~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 140 PNLETLDLSNNMLSGE-IPNDIGSFSSLKVLDLGGNVLVGKIPNSL--TNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred CCCCEEECcCCccccc-CChHHhcCCCCCEEECccCcccccCChhh--hhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 8999999999986532 23335789999999999886433211000 11224555555544321 23567788
Q ss_pred EEecCccce-----eeccCCcCceeEeecccce-EEEeccCCCCCcCEeeeCCCCchHHHHHHHhccCCcccEEEeee
Q 014774 222 LEVQGCSWI-----RVQETNCLRNLSISNNAGR-VYMVDFGKLAALESLTLRGVQWCWDAISKMLYWASEVKHLYMKV 293 (419)
Q Consensus 222 L~l~~~~~~-----~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~ 293 (419)
|+++++.+. .+...++|+.|+++++.-. .....++++++|+.|++.+.... ..+...+..+++|++|+++.
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS-GPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee-ccCchhHhhccCcCEEECcC
Confidence 888776552 1233677777777764110 11223455777777777432210 11222244567777777754
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.75 E-value=1.3e-09 Score=102.66 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=30.5
Q ss_pred cCCCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCC
Q 014774 124 SRAKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGC 184 (419)
Q Consensus 124 ~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c 184 (419)
+.-+++++|+|.+....+.. .+..+.+|..|.|++++++.-.. ..++++|+|+.|++...
T Consensus 170 p~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~-r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 170 PAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ-RSFKRLPKLESLDLNRN 231 (873)
T ss_pred CCCCCceEEeeccccccccccccccccchheeeecccCcccccCH-HHhhhcchhhhhhcccc
Confidence 33455666666554432221 34455566666666666543221 23445666666666433
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.6e-09 Score=92.80 Aligned_cols=196 Identities=24% Similarity=0.265 Sum_probs=100.7
Q ss_pred CccEEEecCccccCCc--c-cccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeE
Q 014774 128 NLESLKLWGVLMVSSP--K-WDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDF 204 (419)
Q Consensus 128 ~L~~L~L~~~~~~~~~--~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~ 204 (419)
.|++|+|++....... + ...|.+||.|.|.+..++|.....++.+ .+|+.|+++.|.+++.-+++.....|.+|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4666666553221111 1 2556666666666666666555544433 5566666666666665544444333444444
Q ss_pred ecccCceeeecCCCccEEEecCccceeeccCCcCceeEeecccceEEEeccC-CCCCcCEeeeCC----CCchHHHHHHH
Q 014774 205 YGLGNCSLSVSCPKIQFLEVQGCSWIRVQETNCLRNLSISNNAGRVYMVDFG-KLAALESLTLRG----VQWCWDAISKM 279 (419)
Q Consensus 205 l~~~~~~l~~~~~~L~~L~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~----~~~~~~~l~~l 279 (419)
+++++|.+.. +. + .+.+. --++|+.|.++| +.+ ..+..+
T Consensus 265 LNlsWc~l~~--~~-------------------V-------------tv~V~hise~l~~LNlsG~rrnl~~--sh~~tL 308 (419)
T KOG2120|consen 265 LNLSWCFLFT--EK-------------------V-------------TVAVAHISETLTQLNLSGYRRNLQK--SHLSTL 308 (419)
T ss_pred cCchHhhccc--hh-------------------h-------------hHHHhhhchhhhhhhhhhhHhhhhh--hHHHHH
Confidence 4444442100 00 0 00001 123455555533 223 456777
Q ss_pred hccCCcccEEEeee-eecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeec
Q 014774 280 LYWASEVKHLYMKV-EFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTV 358 (419)
Q Consensus 280 ~~~~~~L~~L~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~ 358 (419)
...||+|.+|+++. ....+ +....+..++.|++|.++.|..... +.+.+-..-|.|..|++-+
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~----------~~~~~~~kf~~L~~lSlsRCY~i~p------~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKN----------DCFQEFFKFNYLQHLSLSRCYDIIP------ETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred HHhCCceeeeccccccccCc----------hHHHHHHhcchheeeehhhhcCCCh------HHeeeeccCcceEEEEecc
Confidence 88899999988864 22222 2334456778888888887643211 0000111238888888877
Q ss_pred cCCCCchhhhhhHHhhhhcccchh
Q 014774 359 RSPLNAEQKMSTLESLLKYGKNLK 382 (419)
Q Consensus 359 ~~~~~~~~~~~~l~~ll~~~~~L~ 382 (419)
|-.-+ ..+.+.+.||+|+
T Consensus 373 ~vsdt------~mel~~e~~~~lk 390 (419)
T KOG2120|consen 373 CVSDT------TMELLKEMLSHLK 390 (419)
T ss_pred ccCch------HHHHHHHhCcccc
Confidence 64322 2455556677665
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.65 E-value=5.3e-09 Score=98.71 Aligned_cols=197 Identities=20% Similarity=0.224 Sum_probs=111.4
Q ss_pred CcccccccCCCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCC--cccccc
Q 014774 117 PSKLDCISRAKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEG--VRSVSI 192 (419)
Q Consensus 117 ~~~l~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~--~~~~~~ 192 (419)
+.....+....+|..|+|+....-..| .+.++++|+.|+|.++.+..-... -++++|.|+.|.+..... +.+-.+
T Consensus 187 ~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l-tFqgL~Sl~nlklqrN~I~kL~DG~F 265 (873)
T KOG4194|consen 187 TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL-TFQGLPSLQNLKLQRNDISKLDDGAF 265 (873)
T ss_pred ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh-hhcCchhhhhhhhhhcCcccccCcce
Confidence 333445555668999999887765555 567899999999999985422111 246788899998865532 222111
Q ss_pred cccccccceeeEecccCc-------eeeecCCCccEEEecCccceee-----ccCCcCceeEeecccce-EEEeccCCCC
Q 014774 193 ELPHLEQCKLDFYGLGNC-------SLSVSCPKIQFLEVQGCSWIRV-----QETNCLRNLSISNNAGR-VYMVDFGKLA 259 (419)
Q Consensus 193 ~~~~l~~~~L~~l~~~~~-------~l~~~~~~L~~L~l~~~~~~~l-----~~~~~L~~L~l~~~~~~-~~~~~~~~~~ 259 (419)
.. +.+++.+++... .-......|+.|+++.+.+..+ ..++.|+.|+++++.-. .....+..+.
T Consensus 266 y~----l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 266 YG----LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred ee----ecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence 11 112222222211 0124567788888887766332 23788888888764111 0111233466
Q ss_pred CcCEeeeCCCCchHHHHH-HHhccCCcccEEEeee---ee-cCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhH
Q 014774 260 ALESLTLRGVQWCWDAIS-KMLYWASEVKHLYMKV---EF-TGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFA 331 (419)
Q Consensus 260 ~L~~L~l~~~~~~~~~l~-~l~~~~~~L~~L~l~~---~~-~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 331 (419)
.|+.|.++.-.. ..+. ..+....+|+.|+++. .. ++| -...++++++|++|.+.||...
T Consensus 342 ~Le~LnLs~Nsi--~~l~e~af~~lssL~~LdLr~N~ls~~IED-----------aa~~f~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 342 QLEELNLSHNSI--DHLAEGAFVGLSSLHKLDLRSNELSWCIED-----------AAVAFNGLPSLRKLRLTGNQLK 405 (873)
T ss_pred Hhhhhcccccch--HHHHhhHHHHhhhhhhhcCcCCeEEEEEec-----------chhhhccchhhhheeecCceee
Confidence 777777732221 1221 2244567788888854 22 233 1233456788888888877654
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.63 E-value=7.2e-08 Score=89.66 Aligned_cols=60 Identities=22% Similarity=0.107 Sum_probs=31.2
Q ss_pred CCCCccEEEecCccccC-Cc-------ccccCCCccEEEecCeeeCh---HHHHHHHhcCCCCcEEEccCCC
Q 014774 125 RAKNLESLKLWGVLMVS-SP-------KWDVFHKLQNLEIVGARLED---PALSTALRACPNLTNLLLLGCE 185 (419)
Q Consensus 125 ~~~~L~~L~L~~~~~~~-~~-------~~~~~~~L~~L~L~~~~~~~---~~l~~l~~~~p~L~~L~l~~c~ 185 (419)
..+++++|.+.+..... .. .+..+++|+.|+++++.+.+ ..+..+... ++|++|++++|.
T Consensus 49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~ 119 (319)
T cd00116 49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNG 119 (319)
T ss_pred hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCc
Confidence 35566666666544321 11 12345667777777666432 223333333 557777776664
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.60 E-value=2.5e-07 Score=100.12 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=7.5
Q ss_pred hhcccchhhHHHH
Q 014774 375 LKYGKNLKTMVIR 387 (419)
Q Consensus 375 l~~~~~L~~L~i~ 387 (419)
+..+++|+.|.+.
T Consensus 865 i~~l~~L~~L~L~ 877 (1153)
T PLN03210 865 IEKFSNLSFLDMN 877 (1153)
T ss_pred HhcCCCCCEEECC
Confidence 4455666666554
No 12
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.59 E-value=4.4e-08 Score=87.11 Aligned_cols=67 Identities=12% Similarity=0.165 Sum_probs=33.6
Q ss_pred CCCcCEeee-CCCC-c-hHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchh
Q 014774 258 LAALESLTL-RGVQ-W-CWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMF 330 (419)
Q Consensus 258 ~~~L~~L~l-~~~~-~-~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 330 (419)
-++|+.+.. .+-. + ....+...++.+|.|+.+++....+.. +|. .-...-+..+|+|+.|++.+|.+
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~-eG~-----~al~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRP-EGV-----TALAEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccC-chh-----HHHHHHHHhCCcceeeecccchh
Confidence 456666666 2211 1 123455666667777777775422222 111 00122234567777777776665
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.57 E-value=6.6e-07 Score=96.87 Aligned_cols=100 Identities=18% Similarity=0.305 Sum_probs=56.4
Q ss_pred CCCCccEEEecCcccc-CCcccccCCCccEEEecCee-eChHHHHHHHhcCCCCcEEEccCCCCccccccccccccccee
Q 014774 125 RAKNLESLKLWGVLMV-SSPKWDVFHKLQNLEIVGAR-LEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKL 202 (419)
Q Consensus 125 ~~~~L~~L~L~~~~~~-~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L 202 (419)
.+++|+.|+|+++... ..+.+..+++|+.|+|++|. +. .+..-+.++++|+.|++.+|..++..... ....+|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~--~lp~si~~L~~L~~L~L~~c~~L~~Lp~~---i~l~sL 706 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV--ELPSSIQYLNKLEDLDMSRCENLEILPTG---INLKSL 706 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc--ccchhhhccCCCCEEeCCCCCCcCccCCc---CCCCCC
Confidence 4678888888765432 23345667888888888875 32 12333567788888888888765442111 122345
Q ss_pred eEecccCcee----eecCCCccEEEecCccc
Q 014774 203 DFYGLGNCSL----SVSCPKIQFLEVQGCSW 229 (419)
Q Consensus 203 ~~l~~~~~~l----~~~~~~L~~L~l~~~~~ 229 (419)
+.+.+.+|.. .....+|+.|++.++.+
T Consensus 707 ~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i 737 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDISTNISWLDLDETAI 737 (1153)
T ss_pred CEEeCCCCCCccccccccCCcCeeecCCCcc
Confidence 5555555531 11123455555555543
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.56 E-value=6.1e-08 Score=90.15 Aligned_cols=236 Identities=15% Similarity=0.074 Sum_probs=123.0
Q ss_pred ccCCCCccEEEecCccccCCc------ccccCCCccEEEecCeeeC--hHHHH---HHHhcCCCCcEEEccCCCCcccc-
Q 014774 123 ISRAKNLESLKLWGVLMVSSP------KWDVFHKLQNLEIVGARLE--DPALS---TALRACPNLTNLLLLGCEGVRSV- 190 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~------~~~~~~~L~~L~L~~~~~~--~~~l~---~l~~~~p~L~~L~l~~c~~~~~~- 190 (419)
+...++|+.|.+.++...... .....+.|+.|+++++.++ ...+. ..+..+++|+.|++++|......
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 344677999999887643221 1256677999999888765 33332 34456889999999888654321
Q ss_pred -cccccccccceeeEecccCceeeecCCCccEEEecCccce---------eeccC-CcCceeEeecccce-----EEEec
Q 014774 191 -SIELPHLEQCKLDFYGLGNCSLSVSCPKIQFLEVQGCSWI---------RVQET-NCLRNLSISNNAGR-----VYMVD 254 (419)
Q Consensus 191 -~~~~~~l~~~~L~~l~~~~~~l~~~~~~L~~L~l~~~~~~---------~l~~~-~~L~~L~l~~~~~~-----~~~~~ 254 (419)
.+... ... ++|++|++++|.+. .++.. ++|+.++++++.-. .....
T Consensus 99 ~~~~~l-----------------~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 99 GVLESL-----------------LRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred HHHHHH-----------------hcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 11110 011 44555555554331 11223 55566665543100 00001
Q ss_pred cCCCCCcCEeeeCCCCchHHHHHH---HhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhH
Q 014774 255 FGKLAALESLTLRGVQWCWDAISK---MLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFA 331 (419)
Q Consensus 255 ~~~~~~L~~L~l~~~~~~~~~l~~---l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 331 (419)
+..+++|++|++.+.......+.. .+..+++|++|+++....++ .+. ..+...+..+++|++|++++|.+.
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-~~~-----~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD-EGA-----SALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh-HHH-----HHHHHHhcccCCCCEEecCCCcCc
Confidence 233567778877432221133222 33445688888886432222 110 112334456678888888876543
Q ss_pred -----hhhhcccccccccccccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhhhh
Q 014774 332 -----ALCQKNSLKNVESGFVIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQM 391 (419)
Q Consensus 332 -----~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~ 391 (419)
.++. .+. ...+.|+.|++++| .+++++.....+ .+..+++|+.+.+..+.+
T Consensus 235 ~~~~~~l~~--~~~-----~~~~~L~~L~l~~n-~i~~~~~~~l~~-~~~~~~~L~~l~l~~N~l 290 (319)
T cd00116 235 DAGAAALAS--ALL-----SPNISLLTLSLSCN-DITDDGAKDLAE-VLAEKESLLELDLRGNKF 290 (319)
T ss_pred hHHHHHHHH--HHh-----ccCCCceEEEccCC-CCCcHHHHHHHH-HHhcCCCccEEECCCCCC
Confidence 1111 000 01367888888776 355544333333 344557777777766544
No 15
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.43 E-value=9.8e-08 Score=61.31 Aligned_cols=35 Identities=40% Similarity=0.660 Sum_probs=29.7
Q ss_pred CCCcHHHHHHHHhCCCCHHHHHHhhccchhHHHhhc
Q 014774 2 DSLPDAIVQYILSHMKNARDVALCNCVSKRWKESIP 37 (419)
Q Consensus 2 ~~LPd~ll~~I~~~L~~~~~~~~~~~vsk~w~~~~~ 37 (419)
.+||+|++.+||+||+ ..|..+++.|||+|+.++.
T Consensus 4 ~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~ 38 (48)
T PF00646_consen 4 SDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVD 38 (48)
T ss_dssp HHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHT
T ss_pred HHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHc
Confidence 5799999999999999 9999999999999999763
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.36 E-value=3.1e-08 Score=94.42 Aligned_cols=243 Identities=16% Similarity=0.177 Sum_probs=130.0
Q ss_pred ccCCCCccEEEecCccccCC---cccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCccccccccccccc
Q 014774 123 ISRAKNLESLKLWGVLMVSS---PKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQ 199 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~ 199 (419)
+...|.|+++.++.....+. +.+..+..|..|+|+++.+.+ ...-+.+..++-.|+++.....+...--++.+
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~E--vP~~LE~AKn~iVLNLS~N~IetIPn~lfinL-- 149 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLRE--VPTNLEYAKNSIVLNLSYNNIETIPNSLFINL-- 149 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhh--cchhhhhhcCcEEEEcccCccccCCchHHHhh--
Confidence 44466777777765433222 245788999999999998543 22224567888899998765443321111111
Q ss_pred ceeeEecccCceeee------cCCCccEEEecCccc--eeecc---CCcCceeEeecccceE--EEeccCCCCCcCEeee
Q 014774 200 CKLDFYGLGNCSLSV------SCPKIQFLEVQGCSW--IRVQE---TNCLRNLSISNNAGRV--YMVDFGKLAALESLTL 266 (419)
Q Consensus 200 ~~L~~l~~~~~~l~~------~~~~L~~L~l~~~~~--~~l~~---~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l 266 (419)
..|-.+.+++..+.. ....|++|.++++.+ +.+.+ +.+|+.|.+++..-.. .+..+..+.+|+.+++
T Consensus 150 tDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred HhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 112222333222211 234678888998876 33333 4444445555431111 1123445788999999
Q ss_pred CCCCchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhH----hhhhccccccc
Q 014774 267 RGVQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFA----ALCQKNSLKNV 342 (419)
Q Consensus 267 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----~l~~~~~l~~l 342 (419)
+.-.. ..+..-+...++|+.|+++...++... .-.....+|++|+++.+... ++|+++.++.|
T Consensus 230 S~N~L--p~vPecly~l~~LrrLNLS~N~iteL~-----------~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 230 SENNL--PIVPECLYKLRNLRRLNLSGNKITELN-----------MTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKL 296 (1255)
T ss_pred cccCC--CcchHHHhhhhhhheeccCcCceeeee-----------ccHHHHhhhhhhccccchhccchHHHhhhHHHHHH
Confidence 54333 445555677899999999753333311 11233456777777766653 45665545443
Q ss_pred c--------ccc-----ccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhh
Q 014774 343 E--------SGF-----VIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRIL 389 (419)
Q Consensus 343 ~--------~~~-----~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~ 389 (419)
. .|. .+-+|+.+..... .++.|+.-+.+|++|++|.+.-+
T Consensus 297 y~n~NkL~FeGiPSGIGKL~~Levf~aanN-------~LElVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 297 YANNNKLTFEGIPSGIGKLIQLEVFHAANN-------KLELVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred HhccCcccccCCccchhhhhhhHHHHhhcc-------ccccCchhhhhhHHHHHhccccc
Confidence 1 100 0112332222211 13455556677777777777633
No 17
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.33 E-value=5.5e-07 Score=55.60 Aligned_cols=32 Identities=41% Similarity=0.711 Sum_probs=30.6
Q ss_pred CcHHHHHHHHhCCCCHHHHHHhhccchhHHHhh
Q 014774 4 LPDAIVQYILSHMKNARDVALCNCVSKRWKESI 36 (419)
Q Consensus 4 LPd~ll~~I~~~L~~~~~~~~~~~vsk~w~~~~ 36 (419)
||+|++.+||.|++ .+|+.+++.|||+|+.+.
T Consensus 1 lP~~ll~~I~~~l~-~~d~~~~~~vc~~~~~~~ 32 (41)
T smart00256 1 LPDEILEEILSKLP-PKDLLRLRKVSRRWRSLI 32 (41)
T ss_pred CCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHh
Confidence 79999999999999 899999999999999975
No 18
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.32 E-value=8.2e-08 Score=94.64 Aligned_cols=142 Identities=25% Similarity=0.439 Sum_probs=75.1
Q ss_pred CCCccEEEecCc-cccCCc------ccccCCCccEEEecCee-eChHHHHHHHhcCCCCcEEEccCCCCccccccccccc
Q 014774 126 AKNLESLKLWGV-LMVSSP------KWDVFHKLQNLEIVGAR-LEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHL 197 (419)
Q Consensus 126 ~~~L~~L~L~~~-~~~~~~------~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l 197 (419)
|++|++|++.++ ...... ....+++|+.|+++++. ++|.++..++..||+|++|.+..|..+++.++.....
T Consensus 213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~ 292 (482)
T KOG1947|consen 213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE 292 (482)
T ss_pred CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH
Confidence 666666666652 221111 12455666677776666 6666666666667777777766666666665554443
Q ss_pred ccceeeEecccCceeeecCCCccEEEecCccce------ee-ccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCC
Q 014774 198 EQCKLDFYGLGNCSLSVSCPKIQFLEVQGCSWI------RV-QETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQ 270 (419)
Q Consensus 198 ~~~~L~~l~~~~~~l~~~~~~L~~L~l~~~~~~------~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 270 (419)
. +|.|++|++.+|... .+ ..+++++.+.+.. ..+++.++.+.+.+..
T Consensus 293 ~-----------------~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~---------~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 293 R-----------------CPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS---------LNGCPSLTDLSLSGLL 346 (482)
T ss_pred h-----------------cCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh---------cCCCccHHHHHHHHhh
Confidence 3 444555555544321 11 1144444443221 1124455555553211
Q ss_pred c-h-HHHHHHHhccCCcccEEEeee
Q 014774 271 W-C-WDAISKMLYWASEVKHLYMKV 293 (419)
Q Consensus 271 ~-~-~~~l~~l~~~~~~L~~L~l~~ 293 (419)
. . ..........|++++.+.+..
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~ 371 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSY 371 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhh
Confidence 1 0 044555677788888888865
No 19
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.30 E-value=1.4e-06 Score=77.79 Aligned_cols=212 Identities=17% Similarity=0.207 Sum_probs=110.4
Q ss_pred cccCCCccEEEecCeeeCh---HHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEecccCceeeecCCCccE
Q 014774 145 WDVFHKLQNLEIVGARLED---PALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSLSVSCPKIQF 221 (419)
Q Consensus 145 ~~~~~~L~~L~L~~~~~~~---~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l~~~~~~L~~ 221 (419)
...+|+|++|+||.+-++. ..+..++.+|..|++|.+.+|......+ ..++. -|..+... ......|.|+.
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag-~~l~~---al~~l~~~--kk~~~~~~Lrv 161 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAG-GRLGR---ALFELAVN--KKAASKPKLRV 161 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHH-HHHHH---HHHHHHHH--hccCCCcceEE
Confidence 3567788888888887554 4567788899999999999885332211 11000 01111101 23356678888
Q ss_pred EEecCccceeeccCCcCceeEeecccceEEEeccCCCCCcCEeee--CCCCch-HHHHHHHhccCCcccEEEeeeeecCC
Q 014774 222 LEVQGCSWIRVQETNCLRNLSISNNAGRVYMVDFGKLAALESLTL--RGVQWC-WDAISKMLYWASEVKHLYMKVEFTGD 298 (419)
Q Consensus 222 L~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l--~~~~~~-~~~l~~l~~~~~~L~~L~l~~~~~~~ 298 (419)
+...++.+..-+- +.+ ...+...+.|+.+.+ .++... ...+..-+..||+|+.|+|+....+.
T Consensus 162 ~i~~rNrlen~ga----~~~----------A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 162 FICGRNRLENGGA----TAL----------AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL 227 (382)
T ss_pred EEeeccccccccH----HHH----------HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence 8877664411000 000 000112345555555 122221 12445556778888888886522221
Q ss_pred CCCCcCCCCcCHHHHhhcCCCeeEEEecCchhH-----hhhhcccccccccccccccccceeeeccCCCCchhhhhhHHh
Q 014774 299 FDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFA-----ALCQKNSLKNVESGFVIPCLEEVVVTVRSPLNAEQKMSTLES 373 (419)
Q Consensus 299 ~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ 373 (419)
+|- ..+...+..+|+|+.+++++|... ++-. .++ ...|.|+.+.+.++. ++.++... +..
T Consensus 228 -egs-----~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~--al~-----~~~p~L~vl~l~gNe-It~da~~~-la~ 292 (382)
T KOG1909|consen 228 -EGS-----VALAKALSSWPHLRELNLGDCLLENEGAIAFVD--ALK-----ESAPSLEVLELAGNE-ITRDAALA-LAA 292 (382)
T ss_pred -HHH-----HHHHHHhcccchheeecccccccccccHHHHHH--HHh-----ccCCCCceeccCcch-hHHHHHHH-HHH
Confidence 110 122334456677777777776542 1111 111 114788888877765 33333222 223
Q ss_pred hhhcccchhhHHHHhhhh
Q 014774 374 LLKYGKNLKTMVIRILQM 391 (419)
Q Consensus 374 ll~~~~~L~~L~i~~~~~ 391 (419)
.+..-|.|++|.++.+.+
T Consensus 293 ~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 293 CMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcchhhHHhcCCcccc
Confidence 334477888888877755
No 20
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.12 E-value=1.2e-06 Score=86.46 Aligned_cols=249 Identities=19% Similarity=0.219 Sum_probs=139.3
Q ss_pred HHHhCCCcceEEEe-c-CCCcchHHHHHHHhcCCceEEEEEec-CccccccccCCCcccccccC-CCCccEEEecCcccc
Q 014774 65 MIYSIVCLEELVVY-T-PFSKAGLDSWLMLAGSTLKHLELRMD-NLADYQGCLENPSKLDCISR-AKNLESLKLWGVLMV 140 (419)
Q Consensus 65 ~l~~~~~L~~l~l~-~-~~~~~~~~~w~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~l~~l~~-~~~L~~L~L~~~~~~ 140 (419)
+......++++.+. + ......+.++. ...+.|+.|++... ... ... ......+.. |++|+.|++.++..+
T Consensus 183 l~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~----~~~-~~~~~~~~~~~~~L~~l~l~~~~~i 256 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSKITDDSLDALA-LKCPNLEELDLSGCCLLI----TLS-PLLLLLLLSICRKLKSLDLSGCGLV 256 (482)
T ss_pred HHhhCchhhHhhhcccccCChhhHHHHH-hhCchhheecccCccccc----ccc-hhHhhhhhhhcCCcCccchhhhhcc
Confidence 33345777787773 2 12221122221 24578888877641 110 000 111122444 999999999998877
Q ss_pred CCccc----ccCCCccEEEecCee-eChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEecccCceeeec
Q 014774 141 SSPKW----DVFHKLQNLEIVGAR-LEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSLSVS 215 (419)
Q Consensus 141 ~~~~~----~~~~~L~~L~L~~~~-~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l~~~ 215 (419)
++.+. ..|++|+.|.+.+|. +++.++..++.+||+|++|++++|..+++.++......|.+++.+.+..+ ..
T Consensus 257 sd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~---~~ 333 (482)
T KOG1947|consen 257 TDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL---NG 333 (482)
T ss_pred CchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc---CC
Confidence 76643 459999999999999 89999999999999999999999999987766554433444444332211 01
Q ss_pred CCCccEEEecCccceeeccCCcCceeEeecccceEEEeccCCCCCcCEeeeCC--CCchHHHHHHHhccCCcccEEEeee
Q 014774 216 CPKIQFLEVQGCSWIRVQETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRG--VQWCWDAISKMLYWASEVKHLYMKV 293 (419)
Q Consensus 216 ~~~L~~L~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~--~~~~~~~l~~l~~~~~~L~~L~l~~ 293 (419)
++.++.+.+.++.. ... ..........+++++.+.+.. ..+ .....++..||+|. ..+..
T Consensus 334 c~~l~~~~l~~~~~--------~~~-------d~~~~~~~~~~~~l~~~~l~~~~~~~--~~~~~~l~gc~~l~-~~l~~ 395 (482)
T KOG1947|consen 334 CPSLTDLSLSGLLT--------LTS-------DDLAELILRSCPKLTDLSLSYCGISD--LGLELSLRGCPNLT-ESLEL 395 (482)
T ss_pred CccHHHHHHHHhhc--------cCc-------hhHhHHHHhcCCCcchhhhhhhhccC--cchHHHhcCCcccc-hHHHH
Confidence 22333333322110 000 011111234578888888833 333 44567788888883 33321
Q ss_pred eecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeeccCCCCc
Q 014774 294 EFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRSPLNA 364 (419)
Q Consensus 294 ~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~ 364 (419)
....+.+++.|.++.+.....- .+... ...|.+++.+++.++..++.
T Consensus 396 -------------------~~~~~~~l~~L~l~~~~~~t~~---~l~~~--~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 396 -------------------RLCRSDSLRVLNLSDCRLVTDK---GLRCL--ADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred -------------------HhccCCccceEecccCcccccc---chHHH--hhhhhccccCCccCcccccc
Confidence 1112233777777766543110 00000 00156777788777777664
No 21
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.99 E-value=1.6e-07 Score=89.78 Aligned_cols=162 Identities=22% Similarity=0.195 Sum_probs=78.9
Q ss_pred CCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceee
Q 014774 126 AKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLD 203 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~ 203 (419)
.+|+-.|+|++....+.| .+.++..|-.|+|+++++. .+.--..++.+|++|.+++.+...-.--+.|++. .|+
T Consensus 125 AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe--~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt--sL~ 200 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE--MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT--SLS 200 (1255)
T ss_pred hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh--hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccch--hhh
Confidence 445555555554444443 2345555556666666532 1222234556677777766543321101111111 223
Q ss_pred EecccCce--------eeecCCCccEEEecCccceeecc----CCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCc
Q 014774 204 FYGLGNCS--------LSVSCPKIQFLEVQGCSWIRVQE----TNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQW 271 (419)
Q Consensus 204 ~l~~~~~~--------l~~~~~~L~~L~l~~~~~~~l~~----~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 271 (419)
.+++++.. ..-...+|..++++.+.+-.+++ .++|+.|+++.+.-....+..+...+|++|.++.-+.
T Consensus 201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL 280 (1255)
T ss_pred hhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh
Confidence 33333221 11233456666666665544443 4566677776542222222333456778887754333
Q ss_pred hHHHHHHHhccCCcccEEEeee
Q 014774 272 CWDAISKMLYWASEVKHLYMKV 293 (419)
Q Consensus 272 ~~~~l~~l~~~~~~L~~L~l~~ 293 (419)
..+...+-..++|+.|....
T Consensus 281 --t~LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 281 --TVLPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred --ccchHHHhhhHHHHHHHhcc
Confidence 34444555567777777754
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=1.9e-06 Score=79.14 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=20.8
Q ss_pred ccCCCccEEEecCee-eChHHHHHHHhcCCCCcEEEccCC
Q 014774 146 DVFHKLQNLEIVGAR-LEDPALSTALRACPNLTNLLLLGC 184 (419)
Q Consensus 146 ~~~~~L~~L~L~~~~-~~~~~l~~l~~~~p~L~~L~l~~c 184 (419)
..|++++.|+|+++= ..-..+..+++.+|+|+.|+++..
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N 182 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN 182 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc
Confidence 445555555555554 333445555555566665555544
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=2.7e-06 Score=78.13 Aligned_cols=148 Identities=19% Similarity=0.190 Sum_probs=71.2
Q ss_pred CCCccEEEecCccccCCc---ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCccccccccccccccee
Q 014774 126 AKNLESLKLWGVLMVSSP---KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKL 202 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L 202 (419)
.|+|+.|+|+........ .-..++.|+.|.|+.|.++...+..++..||+|+.|.+.+...+.....+
T Consensus 171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--------- 241 (505)
T KOG3207|consen 171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--------- 241 (505)
T ss_pred cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch---------
Confidence 555555555443221111 11345666666666666666666666666666666666655422211100
Q ss_pred eEecccCceeeecCCCccEEEecCccceeec------cCCcCceeEeeccc-ceEEEec------cCCCCCcCEeeeC-C
Q 014774 203 DFYGLGNCSLSVSCPKIQFLEVQGCSWIRVQ------ETNCLRNLSISNNA-GRVYMVD------FGKLAALESLTLR-G 268 (419)
Q Consensus 203 ~~l~~~~~~l~~~~~~L~~L~l~~~~~~~l~------~~~~L~~L~l~~~~-~~~~~~~------~~~~~~L~~L~l~-~ 268 (419)
......|++|+++++.+...+ ..+.|..|+++.+. ..+...+ ...+++|++|.+. +
T Consensus 242 ----------~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 242 ----------TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred ----------hhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC
Confidence 012245556666665543322 14444444444320 0011111 1237788888882 2
Q ss_pred CCchHHHHHHHhccCCcccEEEeee
Q 014774 269 VQWCWDAISKMLYWASEVKHLYMKV 293 (419)
Q Consensus 269 ~~~~~~~l~~l~~~~~~L~~L~l~~ 293 (419)
-...|..+-. +...++|++|.+..
T Consensus 312 ~I~~w~sl~~-l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 312 NIRDWRSLNH-LRTLENLKHLRITL 335 (505)
T ss_pred ccccccccch-hhccchhhhhhccc
Confidence 2212344433 34467777777643
No 24
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.80 E-value=1.7e-05 Score=80.29 Aligned_cols=146 Identities=22% Similarity=0.258 Sum_probs=76.7
Q ss_pred CCcCceeEeecccceEE--EeccCC-CCCcCEeeeCCCCchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCc---
Q 014774 235 TNCLRNLSISNNAGRVY--MVDFGK-LAALESLTLRGVQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEV--- 308 (419)
Q Consensus 235 ~~~L~~L~l~~~~~~~~--~~~~~~-~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~--- 308 (419)
..+|++|++++..-+.. ...++. +|+|++|.+.|..-..+.+..+...+|||..|+++...+.+..|+..+.+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 45677787765311110 112344 789999988765432255777888889999998876444443333222210
Q ss_pred -----------CHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeeccCCCCchhhhhhHHhhhhc
Q 014774 309 -----------DFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRSPLNAEQKMSTLESLLKY 377 (419)
Q Consensus 309 -----------~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~ 377 (419)
++.. +-..++|+.|+++......-... -.+++..++.+|+|+.|+.++ ..++ ...++.+++.
T Consensus 201 ~mrnLe~e~~~~l~~-LF~L~~L~vLDIS~~~~~~~~~i-i~qYlec~~~LpeLrfLDcSg-Tdi~----~~~le~ll~s 273 (699)
T KOG3665|consen 201 SMRNLEFESYQDLID-LFNLKKLRVLDISRDKNNDDTKI-IEQYLECGMVLPELRFLDCSG-TDIN----EEILEELLNS 273 (699)
T ss_pred hccCCCCCchhhHHH-HhcccCCCeeeccccccccchHH-HHHHHHhcccCccccEEecCC-cchh----HHHHHHHHHh
Confidence 0111 12346666666664332100000 011223455567777777663 2233 2456666666
Q ss_pred ccchhhHHHH
Q 014774 378 GKNLKTMVIR 387 (419)
Q Consensus 378 ~~~L~~L~i~ 387 (419)
=|+|+.....
T Consensus 274 H~~L~~i~~~ 283 (699)
T KOG3665|consen 274 HPNLQQIAAL 283 (699)
T ss_pred CccHhhhhhh
Confidence 6777766654
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.74 E-value=4.1e-05 Score=63.61 Aligned_cols=91 Identities=21% Similarity=0.283 Sum_probs=37.4
Q ss_pred cccccC-CCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccc
Q 014774 120 LDCISR-AKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLE 198 (419)
Q Consensus 120 l~~l~~-~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~ 198 (419)
++.++. +.+|+.|+++++......++..+++|+.|+++++.+++-. ..+...+|+|++|.+.+...-.-..+.
T Consensus 34 Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~----- 107 (175)
T PF14580_consen 34 IENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELE----- 107 (175)
T ss_dssp --S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCG-----
T ss_pred ccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhH-----
Confidence 344553 6799999999988777677888999999999999976531 123457999999999876432222111
Q ss_pred cceeeEecccCceeeecCCCccEEEecCccc
Q 014774 199 QCKLDFYGLGNCSLSVSCPKIQFLEVQGCSW 229 (419)
Q Consensus 199 ~~~L~~l~~~~~~l~~~~~~L~~L~l~~~~~ 229 (419)
.+ ..+|+|+.|.+.++++
T Consensus 108 ------------~L-~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 108 ------------PL-SSLPKLRVLSLEGNPV 125 (175)
T ss_dssp ------------GG-GG-TT--EEE-TT-GG
T ss_pred ------------HH-HcCCCcceeeccCCcc
Confidence 11 3568899999988866
No 26
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.67 E-value=9.6e-06 Score=81.25 Aligned_cols=219 Identities=20% Similarity=0.214 Sum_probs=117.3
Q ss_pred ccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEecccCce------eeecCCCc
Q 014774 146 DVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCS------LSVSCPKI 219 (419)
Q Consensus 146 ~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~------l~~~~~~L 219 (419)
..-.+|+.++++++.++. +...+..|++|+.++........-. .+.... -.|+.+....+. .......|
T Consensus 238 p~p~nl~~~dis~n~l~~--lp~wi~~~~nle~l~~n~N~l~~lp-~ri~~~--~~L~~l~~~~nel~yip~~le~~~sL 312 (1081)
T KOG0618|consen 238 PVPLNLQYLDISHNNLSN--LPEWIGACANLEALNANHNRLVALP-LRISRI--TSLVSLSAAYNELEYIPPFLEGLKSL 312 (1081)
T ss_pred cccccceeeecchhhhhc--chHHHHhcccceEecccchhHHhhH-HHHhhh--hhHHHHHhhhhhhhhCCCccccccee
Confidence 445678999999887553 3467788999999998766442211 000000 011122212221 11224567
Q ss_pred cEEEecCccceeecc------CCcCceeEeecccceEE-EeccC--CCCCcCEeeeC--CCCchHHHHHHHhccCCcccE
Q 014774 220 QFLEVQGCSWIRVQE------TNCLRNLSISNNAGRVY-MVDFG--KLAALESLTLR--GVQWCWDAISKMLYWASEVKH 288 (419)
Q Consensus 220 ~~L~l~~~~~~~l~~------~~~L~~L~l~~~~~~~~-~~~~~--~~~~L~~L~l~--~~~~~~~~l~~l~~~~~~L~~ 288 (419)
++|++..+.+..++. ...+..+..+.. ... ....+ ..+.|+.|.+. .+++ .....+.++++||.
T Consensus 313 ~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n--~l~~lp~~~e~~~~~Lq~LylanN~Ltd---~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 313 RTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN--KLSTLPSYEENNHAALQELYLANNHLTD---SCFPVLVNFKHLKV 387 (1081)
T ss_pred eeeeehhccccccchHHHhhhhHHHHHHhhhhc--cccccccccchhhHHHHHHHHhcCcccc---cchhhhccccceee
Confidence 778887765533332 001111111110 000 00112 25678888882 3444 34456778999999
Q ss_pred EEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhh--------------hhcccccccccccccccccce
Q 014774 289 LYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAAL--------------CQKNSLKNVESGFVIPCLEEV 354 (419)
Q Consensus 289 L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l--------------~~~~~l~~l~~~~~~p~L~~l 354 (419)
|++.....+.++ ...+.+++.|+.|+++||....+ +..+.+-.+++-...|+|+.+
T Consensus 388 LhLsyNrL~~fp----------as~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~l 457 (1081)
T KOG0618|consen 388 LHLSYNRLNSFP----------ASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVL 457 (1081)
T ss_pred eeecccccccCC----------HHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceEE
Confidence 999764343311 23456678888899998876311 112223334555567888888
Q ss_pred eeeccCCCCchhhhhhHHhhhhcccchhhHHHHhhh
Q 014774 355 VVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQ 390 (419)
Q Consensus 355 ~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~ 390 (419)
+++ |.+++. -.++..+.+ |+|+.|.+.++.
T Consensus 458 DlS-~N~L~~----~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 458 DLS-CNNLSE----VTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred ecc-cchhhh----hhhhhhCCC-cccceeeccCCc
Confidence 887 444442 122322222 788888888774
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.52 E-value=9.1e-05 Score=61.56 Aligned_cols=127 Identities=19% Similarity=0.256 Sum_probs=40.4
Q ss_pred CCccEEEecCccceeecc----CCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHHH-HHHhccCCcccEEEe
Q 014774 217 PKIQFLEVQGCSWIRVQE----TNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDAI-SKMLYWASEVKHLYM 291 (419)
Q Consensus 217 ~~L~~L~l~~~~~~~l~~----~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l-~~l~~~~~~L~~L~l 291 (419)
.++++|++.++.+..+.. ...++.|+++++.-. ....+..+++|+.|++++-.. ..+ ..+...+|+|++|++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~-~l~~l~~L~~L~~L~L~~N~I--~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQIT-KLEGLPGLPRLKTLDLSNNRI--SSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS-----S-CHHHHHH-TT--EEE-
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCc-cccCccChhhhhhcccCCCCC--CccccchHHhCCcCCEEEC
Confidence 355666666665533322 345666666653110 011234578899998854322 223 223356899999999
Q ss_pred eeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeecc
Q 014774 292 KVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVR 359 (419)
Q Consensus 292 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~ 359 (419)
+...+.+...+ ..+..+|+|+.|++.||+.... ..-+ ...-..+|+|+.|+-...
T Consensus 96 ~~N~I~~l~~l---------~~L~~l~~L~~L~L~~NPv~~~---~~YR-~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 96 SNNKISDLNEL---------EPLSSLPKLRVLSLEGNPVCEK---KNYR-LFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TTS---SCCCC---------GGGGG-TT--EEE-TT-GGGGS---TTHH-HHHHHH-TT-SEETTEET
T ss_pred cCCcCCChHHh---------HHHHcCCCcceeeccCCcccch---hhHH-HHHHHHcChhheeCCEEc
Confidence 76444432222 2246789999999999875311 0000 011123688888886543
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.51 E-value=0.00028 Score=72.05 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=6.6
Q ss_pred CCccEEEecCeee
Q 014774 149 HKLQNLEIVGARL 161 (419)
Q Consensus 149 ~~L~~L~L~~~~~ 161 (419)
++|+.|++++|.+
T Consensus 242 ~~Lk~LdLs~N~L 254 (788)
T PRK15387 242 PELRTLEVSGNQL 254 (788)
T ss_pred CCCcEEEecCCcc
Confidence 4555555555543
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.41 E-value=0.00032 Score=71.68 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=21.4
Q ss_pred CCCccEEEecCccccCCcccccCCCccEEEecCeeeC
Q 014774 126 AKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLE 162 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 162 (419)
.++|++|+++++.....|. ..++|+.|+++++.++
T Consensus 241 p~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLT 275 (788)
T ss_pred CCCCcEEEecCCccCcccC--cccccceeeccCCchh
Confidence 5788888888764433332 2356666666666543
No 30
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.38 E-value=0.00019 Score=72.73 Aligned_cols=152 Identities=17% Similarity=0.235 Sum_probs=86.1
Q ss_pred CCCccEEEecCccccCCccc-----ccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCccccccccc-cccc
Q 014774 126 AKNLESLKLWGVLMVSSPKW-----DVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELP-HLEQ 199 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~~~-----~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~-~l~~ 199 (419)
-.+|++|+++|-.... .+| ..+|.|++|.+++..+....+..+..+.|||..|+++++....-.|++.+ .++.
T Consensus 121 r~nL~~LdI~G~~~~s-~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFS-NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhh-ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHH
Confidence 5688888888744332 234 56899999999988866667888899999999999988754333333321 1111
Q ss_pred ceeeEecccCce---eeecCCCccEEEecCccceeeccCCcCceeEeecccceEEEeccC-CCCCcCEeeeCCCCchHHH
Q 014774 200 CKLDFYGLGNCS---LSVSCPKIQFLEVQGCSWIRVQETNCLRNLSISNNAGRVYMVDFG-KLAALESLTLRGVQWCWDA 275 (419)
Q Consensus 200 ~~L~~l~~~~~~---l~~~~~~L~~L~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~ 275 (419)
..+..+.+.... -.....+|+.|+++....... +.+... ..+.+ .+|+|+.||.+|-+.....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~---~~ii~q----------Ylec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD---TKIIEQ----------YLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccc---hHHHHH----------HHHhcccCccccEEecCCcchhHHH
Confidence 111111111000 012344555555554321000 000000 01112 3899999999765544467
Q ss_pred HHHHhccCCcccEEEe
Q 014774 276 ISKMLYWASEVKHLYM 291 (419)
Q Consensus 276 l~~l~~~~~~L~~L~l 291 (419)
++.++..-|+|+.+..
T Consensus 267 le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 267 LEELLNSHPNLQQIAA 282 (699)
T ss_pred HHHHHHhCccHhhhhh
Confidence 8888888888887764
No 31
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.35 E-value=0.00028 Score=72.27 Aligned_cols=176 Identities=13% Similarity=0.136 Sum_probs=84.7
Q ss_pred CCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEe
Q 014774 126 AKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFY 205 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l 205 (419)
.++|+.|+|.++.....+. ..+++|+.|++++|.++. +..- -.++|+.|++++|....-. ... ...|+.+
T Consensus 198 p~~L~~L~Ls~N~LtsLP~-~l~~nL~~L~Ls~N~Lts--LP~~--l~~~L~~L~Ls~N~L~~LP-~~l----~s~L~~L 267 (754)
T PRK15370 198 PEQITTLILDNNELKSLPE-NLQGNIKTLYANSNQLTS--IPAT--LPDTIQEMELSINRITELP-ERL----PSALQSL 267 (754)
T ss_pred ccCCcEEEecCCCCCcCCh-hhccCCCEEECCCCcccc--CChh--hhccccEEECcCCccCcCC-hhH----hCCCCEE
Confidence 3567777777664433332 123578888887776542 1111 1246777777776533211 000 1134444
Q ss_pred cccCceee---e-cCCCccEEEecCccceeecc--CCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHHHHHH
Q 014774 206 GLGNCSLS---V-SCPKIQFLEVQGCSWIRVQE--TNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDAISKM 279 (419)
Q Consensus 206 ~~~~~~l~---~-~~~~L~~L~l~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l 279 (419)
+++++.+. . ..++|+.|++++|.+..++. ...|+.|+++++. .........++|+.|++.+... ..+..
T Consensus 268 ~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~--Lt~LP~~l~~sL~~L~Ls~N~L--t~LP~- 342 (754)
T PRK15370 268 DLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNS--LTALPETLPPGLKTLEAGENAL--TSLPA- 342 (754)
T ss_pred ECcCCccCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCc--cccCCccccccceeccccCCcc--ccCCh-
Confidence 44433221 0 12467777777776644443 2345666665531 0001111135677777743222 11111
Q ss_pred hccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchh
Q 014774 280 LYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMF 330 (419)
Q Consensus 280 ~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 330 (419)
..+++|+.|+++...... ++ ..+ .++|+.|++++|.+
T Consensus 343 -~l~~sL~~L~Ls~N~L~~------LP----~~l---p~~L~~LdLs~N~L 379 (754)
T PRK15370 343 -SLPPELQVLDVSKNQITV------LP----ETL---PPTITTLDVSRNAL 379 (754)
T ss_pred -hhcCcccEEECCCCCCCc------CC----hhh---cCCcCEEECCCCcC
Confidence 113678887775422211 00 011 25788888877654
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.09 E-value=0.0012 Score=67.88 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=13.9
Q ss_pred HHHhhcCCCeeEEEecCchh
Q 014774 311 VEFFNNHPKLQKFDIHGAMF 330 (419)
Q Consensus 311 ~~~~~~~~~L~~L~l~~~~~ 330 (419)
..+....|++..+++.+|.+
T Consensus 408 ~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 408 PHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHHhhcCCCccEEEeeCCCc
Confidence 44455567888888887765
No 33
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.01 E-value=0.0018 Score=56.38 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=19.9
Q ss_pred cCCCccEEEecCeeeChHHHHHHHh---cCCCCcEEEcc
Q 014774 147 VFHKLQNLEIVGARLEDPALSTALR---ACPNLTNLLLL 182 (419)
Q Consensus 147 ~~~~L~~L~L~~~~~~~~~l~~l~~---~~p~L~~L~l~ 182 (419)
....++.++|+++.++.++...+.. +-.+|+..+++
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfs 66 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFS 66 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehh
Confidence 3556667777777766666555443 33344444443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.94 E-value=0.0012 Score=58.39 Aligned_cols=209 Identities=17% Similarity=0.174 Sum_probs=102.2
Q ss_pred CCCccEEEecCccccCCc----------ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCccccccccc
Q 014774 126 AKNLESLKLWGVLMVSSP----------KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELP 195 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~----------~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~ 195 (419)
|..|++|..++....-+. ....|++|+.+.++.|. .+.+..+...-|.|+++.++.... .+..+-.|
T Consensus 181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~--~~~i~~~~~~kptl~t~~v~~s~~-~~~~~l~p 257 (490)
T KOG1259|consen 181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS--TENIVDIELLKPTLQTICVHNTTI-QDVPSLLP 257 (490)
T ss_pred hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc--hhheeceeecCchhheeeeecccc-cccccccc
Confidence 778999988764321111 12567888988888875 223344555668888888764321 11100000
Q ss_pred ccccceee--Eeccc-Cc--eeeecCCCccEEEecCccceeecc----CCcCceeEeecccceEEEeccCCCCCcCEeee
Q 014774 196 HLEQCKLD--FYGLG-NC--SLSVSCPKIQFLEVQGCSWIRVQE----TNCLRNLSISNNAGRVYMVDFGKLAALESLTL 266 (419)
Q Consensus 196 ~l~~~~L~--~l~~~-~~--~l~~~~~~L~~L~l~~~~~~~l~~----~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 266 (419)
...-.... .-... +. .....+..|+.++++++.+..+.+ .|.++.|.++++ +......+..+++|+.|++
T Consensus 258 e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDL 336 (490)
T KOG1259|consen 258 ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQNLAELPQLQLLDL 336 (490)
T ss_pred hhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehhhhhcccceEeec
Confidence 00000000 00000 00 112345677788888876644443 566777777663 1111112444677788877
Q ss_pred CCCCchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhccccccccccc
Q 014774 267 RGVQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGF 346 (419)
Q Consensus 267 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~ 346 (419)
++-+. ..+...-...-|++.|.+....+.+..| +...=+|..|++++|....+-.-.+..
T Consensus 337 S~N~L--s~~~Gwh~KLGNIKtL~La~N~iE~LSG------------L~KLYSLvnLDl~~N~Ie~ldeV~~IG------ 396 (490)
T KOG1259|consen 337 SGNLL--AECVGWHLKLGNIKTLKLAQNKIETLSG------------LRKLYSLVNLDLSSNQIEELDEVNHIG------ 396 (490)
T ss_pred ccchh--HhhhhhHhhhcCEeeeehhhhhHhhhhh------------hHhhhhheeccccccchhhHHHhcccc------
Confidence 65443 3333334445566666664322222111 122235666777776654221101122
Q ss_pred ccccccceeeec
Q 014774 347 VIPCLEEVVVTV 358 (419)
Q Consensus 347 ~~p~L~~l~l~~ 358 (419)
.+|.||.+.+.+
T Consensus 397 ~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 397 NLPCLETLRLTG 408 (490)
T ss_pred cccHHHHHhhcC
Confidence 237777776644
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.83 E-value=0.00054 Score=46.22 Aligned_cols=58 Identities=28% Similarity=0.358 Sum_probs=37.1
Q ss_pred CCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCC
Q 014774 127 KNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCE 185 (419)
Q Consensus 127 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~ 185 (419)
|+|+.|++.++.....+ .+..+++|+.|+++++.++.-. ...+.++|+|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCc
Confidence 56777787776433322 4567788888888877743211 1235678888888887764
No 36
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.00094 Score=58.90 Aligned_cols=147 Identities=20% Similarity=0.229 Sum_probs=79.2
Q ss_pred ccEEEecCccccCCcc---c-ccCCCccEEEecCeeeCh-HHHHHHHhcCCCCcEEEccCCCCcccccccccccccceee
Q 014774 129 LESLKLWGVLMVSSPK---W-DVFHKLQNLEIVGARLED-PALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLD 203 (419)
Q Consensus 129 L~~L~L~~~~~~~~~~---~-~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~ 203 (419)
++-|.+.+|...+... + ..+..++.|+|.++.++| +.+..++.+.|.|+.|+++.. .+... +...-+.-.+|.
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~-I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSD-IKSLPLPLKNLR 124 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCc-cccCcccccceE
Confidence 4445666766544332 2 567889999999998665 677889999999999999744 33332 111101112333
Q ss_pred EecccCce--------eeecCCCccEEEecCccceeeccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCC-chHH
Q 014774 204 FYGLGNCS--------LSVSCPKIQFLEVQGCSWIRVQETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQ-WCWD 274 (419)
Q Consensus 204 ~l~~~~~~--------l~~~~~~L~~L~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~ 274 (419)
.+-+.+.. +....|.++.|++++++. +.+.++..... ..-+.+.+|+..+.. ..|.
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~---------rq~n~Dd~c~e------~~s~~v~tlh~~~c~~~~w~ 189 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL---------RQLNLDDNCIE------DWSTEVLTLHQLPCLEQLWL 189 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchh---------hhhcccccccc------ccchhhhhhhcCCcHHHHHH
Confidence 33222221 223345555555555422 22222221000 012345555553222 2456
Q ss_pred HHHHHhccCCcccEEEee
Q 014774 275 AISKMLYWASEVKHLYMK 292 (419)
Q Consensus 275 ~l~~l~~~~~~L~~L~l~ 292 (419)
....+.+.+||+..+.+.
T Consensus 190 ~~~~l~r~Fpnv~sv~v~ 207 (418)
T KOG2982|consen 190 NKNKLSRIFPNVNSVFVC 207 (418)
T ss_pred HHHhHHhhcccchheeee
Confidence 667777788888887773
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.26 E-value=0.013 Score=51.97 Aligned_cols=117 Identities=15% Similarity=0.218 Sum_probs=61.7
Q ss_pred CCCcCEeeeCCCCchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhh----
Q 014774 258 LAALESLTLRGVQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAAL---- 333 (419)
Q Consensus 258 ~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l---- 333 (419)
...|+++++++-.. ..+.+-..-.|.++.|.++...+.. ..+ +...++|+.|++++|....+
T Consensus 283 Wq~LtelDLS~N~I--~~iDESvKL~Pkir~L~lS~N~i~~-----------v~n-La~L~~L~~LDLS~N~Ls~~~Gwh 348 (490)
T KOG1259|consen 283 WQELTELDLSGNLI--TQIDESVKLAPKLRRLILSQNRIRT-----------VQN-LAELPQLQLLDLSGNLLAECVGWH 348 (490)
T ss_pred Hhhhhhccccccch--hhhhhhhhhccceeEEeccccceee-----------ehh-hhhcccceEeecccchhHhhhhhH
Confidence 45677777755333 3444456667788888775421111 111 34456677777776654322
Q ss_pred hhcccccccccc----------cccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhhhhcc
Q 014774 334 CQKNSLKNVESG----------FVIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQMKS 393 (419)
Q Consensus 334 ~~~~~l~~l~~~----------~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~~~ 393 (419)
-++++.+.|... ..+=+|+.|++.+.. +.. +..|+. +...|.|+.+.+..+++..
T Consensus 349 ~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~-Ie~---ldeV~~-IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQ-IEE---LDEVNH-IGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccc-hhh---HHHhcc-cccccHHHHHhhcCCCccc
Confidence 112233332100 012355666665432 221 344544 4678999999998776543
No 38
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.02 E-value=0.0084 Score=37.22 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=18.4
Q ss_pred CCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCC
Q 014774 149 HKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCE 185 (419)
Q Consensus 149 ~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~ 185 (419)
++|+.|+++++.+++ +...+.++++|+.|+++++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 356666666666553 22224566666666666664
No 39
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.87 E-value=0.00027 Score=57.14 Aligned_cols=56 Identities=23% Similarity=0.343 Sum_probs=32.6
Q ss_pred CCCCccEEEecCccc-cCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEcc
Q 014774 125 RAKNLESLKLWGVLM-VSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLL 182 (419)
Q Consensus 125 ~~~~L~~L~L~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~ 182 (419)
...+.+.|.|+.... +..|.+..+.+|+.|.++++.+.+ +..-+++.|+|+.|++.
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvg 87 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVG 87 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecc
Confidence 344566666655433 233355667777777777766543 22334566777777664
No 40
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.64 E-value=0.0005 Score=62.86 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=48.6
Q ss_pred cccccccC--CCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccc
Q 014774 118 SKLDCISR--AKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSV 190 (419)
Q Consensus 118 ~~l~~l~~--~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~ 190 (419)
.++..++. .+.-++++|-....-..| .+..+++|++|+|+++.|+..+- ..+++.++|.+|.+.+...+++.
T Consensus 56 ~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p-~AF~GL~~l~~Lvlyg~NkI~~l 131 (498)
T KOG4237|consen 56 KGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP-DAFKGLASLLSLVLYGNNKITDL 131 (498)
T ss_pred CCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcCh-HhhhhhHhhhHHHhhcCCchhhh
Confidence 34555544 457777888655443333 67899999999999998654322 23566788888888886666653
No 41
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.55 E-value=0.018 Score=35.69 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=29.7
Q ss_pred CCccEEEecCccccCCcc-cccCCCccEEEecCeeeCh
Q 014774 127 KNLESLKLWGVLMVSSPK-WDVFHKLQNLEIVGARLED 163 (419)
Q Consensus 127 ~~L~~L~L~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~ 163 (419)
++|++|++.++...+.+. +..+++|+.|+++++.+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 589999999987655555 7899999999999998764
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.52 E-value=0.017 Score=38.79 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=30.4
Q ss_pred cccCCCCccEEEecCccccCCc--ccccCCCccEEEecCee
Q 014774 122 CISRAKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGAR 160 (419)
Q Consensus 122 ~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~ 160 (419)
.+..+++|+.|+++++.....+ .+..+++|+.|++++|.
T Consensus 20 ~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 20 SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4455899999999987543332 56899999999999985
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.017 Score=51.21 Aligned_cols=111 Identities=19% Similarity=0.178 Sum_probs=70.3
Q ss_pred CCCccEEEecCeeeCh-HHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEecccCceeeecCCCccEEEecC
Q 014774 148 FHKLQNLEIVGARLED-PALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSLSVSCPKIQFLEVQG 226 (419)
Q Consensus 148 ~~~L~~L~L~~~~~~~-~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l~~~~~~L~~L~l~~ 226 (419)
...++-|.+.++.+.. ..+..+...|..++++++.+...-.-..+. .+...+|.|+.|+++.
T Consensus 44 ~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~-----------------~ile~lP~l~~LNls~ 106 (418)
T KOG2982|consen 44 LRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIG-----------------AILEQLPALTTLNLSC 106 (418)
T ss_pred ccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHH-----------------HHHhcCccceEeeccC
Confidence 3456677788887554 456677888999999999876432221111 1235679999999988
Q ss_pred ccceeeccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHHHHHHhccCCcccEEEeee
Q 014774 227 CSWIRVQETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDAISKMLYWASEVKHLYMKV 293 (419)
Q Consensus 227 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~ 293 (419)
+++.. .+.++ .....+|+.|-+.|-.-.|......+...|.+++|+++.
T Consensus 107 N~L~s-----~I~~l-------------p~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 107 NSLSS-----DIKSL-------------PLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSD 155 (418)
T ss_pred CcCCC-----ccccC-------------cccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhcc
Confidence 76611 11111 012346777777544334477778888888888888853
No 44
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.37 E-value=0.011 Score=52.62 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=30.9
Q ss_pred CCCCcHHHHHHHHhCC----CCHHHHHHhhccchhHHHhh
Q 014774 1 MDSLPDAIVQYILSHM----KNARDVALCNCVSKRWKESI 36 (419)
Q Consensus 1 ~~~LPd~ll~~I~~~L----~~~~~~~~~~~vsk~w~~~~ 36 (419)
|..||||+|..||... -+.+++.++|+|||.|+...
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHH
Confidence 4689999999999873 23799999999999999865
No 45
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.0031 Score=52.63 Aligned_cols=48 Identities=19% Similarity=0.373 Sum_probs=37.6
Q ss_pred ccCCCccEEEecCee-eChHHHHHHHhcCCCCcEEEccCCCCccccccc
Q 014774 146 DVFHKLQNLEIVGAR-LEDPALSTALRACPNLTNLLLLGCEGVRSVSIE 193 (419)
Q Consensus 146 ~~~~~L~~L~L~~~~-~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~ 193 (419)
..++.++.|.+.+|. +.|.++..+..-.|+|+.|++++|+-+++.|+.
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~ 170 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA 170 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH
Confidence 566777888888887 788888888788888888888888888776553
No 46
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.31 E-value=0.0055 Score=33.13 Aligned_cols=21 Identities=38% Similarity=0.862 Sum_probs=13.8
Q ss_pred CCCCcEEEccCCCCccccccc
Q 014774 173 CPNLTNLLLLGCEGVRSVSIE 193 (419)
Q Consensus 173 ~p~L~~L~l~~c~~~~~~~~~ 193 (419)
||+|++|++++|..+++.++.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~ 21 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQ 21 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHH
Confidence 566777777777666666544
No 47
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=95.29 E-value=0.015 Score=31.39 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=19.2
Q ss_pred CCCccEEEecCee-eChHHHHHHHh
Q 014774 148 FHKLQNLEIVGAR-LEDPALSTALR 171 (419)
Q Consensus 148 ~~~L~~L~L~~~~-~~~~~l~~l~~ 171 (419)
|++|+.|+|++|. ++|.++..+..
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5788888888887 88888887654
No 48
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.17 E-value=0.016 Score=53.85 Aligned_cols=37 Identities=14% Similarity=0.450 Sum_probs=33.8
Q ss_pred CCCcHHHHHHHHhCCCCHHHHHHhhccchhHHHhhcc
Q 014774 2 DSLPDAIVQYILSHMKNARDVALCNCVSKRWKESIPY 38 (419)
Q Consensus 2 ~~LPd~ll~~I~~~L~~~~~~~~~~~vsk~w~~~~~~ 38 (419)
++||+|+|..|..+|+..-|+++.+.|||.||.....
T Consensus 5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 5799999999999998789999999999999997654
No 49
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.06 E-value=0.00014 Score=66.59 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=27.9
Q ss_pred CCCccEEEecCccccCCc-ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCC
Q 014774 126 AKNLESLKLWGVLMVSSP-KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGC 184 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c 184 (419)
.+.|+.|+++.......| .++....+++|+.+++.++. +..-..+.++|..++.+..
T Consensus 67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~--lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSE--LPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred ccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhh--ccHHHhhhhhhhhhhcccc
Confidence 345555665554433333 34556666666666665331 1112233455555555433
No 50
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.01 E-value=0.0068 Score=50.61 Aligned_cols=73 Identities=21% Similarity=0.222 Sum_probs=59.1
Q ss_pred CcccccccCCCCccEEEecCccccCCccc----ccCCCccEEEecCee-eChHHHHHHHhcCCCCcEEEccCCCCcccc
Q 014774 117 PSKLDCISRAKNLESLKLWGVLMVSSPKW----DVFHKLQNLEIVGAR-LEDPALSTALRACPNLTNLLLLGCEGVRSV 190 (419)
Q Consensus 117 ~~~l~~l~~~~~L~~L~L~~~~~~~~~~~----~~~~~L~~L~L~~~~-~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~ 190 (419)
..+++.+..++.++.|.+.+|..+.+-.. ...++|+.|+|++|+ ||+.++.-+ ...++|+.|.+.+-+.+...
T Consensus 115 ~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L-~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 115 YEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACL-LKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred HHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHH-HHhhhhHHHHhcCchhhhch
Confidence 44567777788999999999988777532 567999999999999 999998764 56899999999887766554
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=94.76 E-value=0.018 Score=51.69 Aligned_cols=35 Identities=37% Similarity=0.707 Sum_probs=32.3
Q ss_pred CCCCc----HHHHHHHHhCCCCHHHHHHhhccchhHHHhh
Q 014774 1 MDSLP----DAIVQYILSHMKNARDVALCNCVSKRWKESI 36 (419)
Q Consensus 1 ~~~LP----d~ll~~I~~~L~~~~~~~~~~~vsk~w~~~~ 36 (419)
|+.|| |++-+.||+||+ ..+++.|-+|||+|+.+.
T Consensus 75 i~~lP~~gl~hi~e~ilsyld-~~sLc~celv~k~W~r~l 113 (499)
T KOG0281|consen 75 ITALPEQGLDHIAENILSYLD-ALSLCACELVCKEWKRVL 113 (499)
T ss_pred HHhcccccHHHHHHHHHHhcc-hhhhhHHHHHHHHHHHHh
Confidence 46799 999999999999 999999999999999965
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.32 E-value=0.032 Score=53.54 Aligned_cols=60 Identities=28% Similarity=0.323 Sum_probs=40.2
Q ss_pred CCCccEEEecCccccCCcccc-cC-CCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCc
Q 014774 126 AKNLESLKLWGVLMVSSPKWD-VF-HKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGV 187 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~~~~-~~-~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~ 187 (419)
.++++.|.+.+......+... .. ++|+.|+++++.+.+.. .-...+|+|+.|.+..++..
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhh--hhhhccccccccccCCchhh
Confidence 356777877765554444443 33 28999999988765421 23567899999999887543
No 53
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=94.29 E-value=0.099 Score=55.02 Aligned_cols=61 Identities=16% Similarity=0.053 Sum_probs=33.9
Q ss_pred CccEEEecCccccCCcccccCCCccEEEecCeee-ChHHHHHHHhcCCCCcEEEccCCCCcc
Q 014774 128 NLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARL-EDPALSTALRACPNLTNLLLLGCEGVR 188 (419)
Q Consensus 128 ~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~~p~L~~L~l~~c~~~~ 188 (419)
..+.+.+.+......+....+++|++|-+.++.. -.......+.+.|.|+.|++++|...+
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~ 585 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS 585 (889)
T ss_pred heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC
Confidence 3444444443332333345566788887777641 111222335678888888888865544
No 54
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.96 E-value=0.066 Score=28.15 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=15.9
Q ss_pred CCCccEEEecCeeeChHHHHHHH
Q 014774 148 FHKLQNLEIVGARLEDPALSTAL 170 (419)
Q Consensus 148 ~~~L~~L~L~~~~~~~~~l~~l~ 170 (419)
+++|+.|+|++|.+++++...+.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 46788888888888888877664
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.95 E-value=0.029 Score=48.87 Aligned_cols=61 Identities=25% Similarity=0.238 Sum_probs=45.7
Q ss_pred CCCccEEEecCccccCCcccccCCCccEEEecCee-eChHHHHHHHhcCCCCcEEEccCCCC
Q 014774 126 AKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGAR-LEDPALSTALRACPNLTNLLLLGCEG 186 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~p~L~~L~l~~c~~ 186 (419)
..+|+.|++.++...+...+..+++||+|.++.+. -...++..++..||+|+++++++...
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 56777777777665555566778899999999884 22345667788889999999987743
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.88 E-value=0.19 Score=42.27 Aligned_cols=91 Identities=21% Similarity=0.293 Sum_probs=60.3
Q ss_pred cccccCCCCccEEEecCccccCCc-cc-ccCCCccEEEecCeeeCh-HHHHHHHhcCCCCcEEEccCCCCcccccccccc
Q 014774 120 LDCISRAKNLESLKLWGVLMVSSP-KW-DVFHKLQNLEIVGARLED-PALSTALRACPNLTNLLLLGCEGVRSVSIELPH 196 (419)
Q Consensus 120 l~~l~~~~~L~~L~L~~~~~~~~~-~~-~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~ 196 (419)
+..++..++|..|.|.+....... .. ..+++|+.|.|.++++-. ..+.. +..||.|+.|.+.+.+.....+
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~~----- 130 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKKN----- 130 (233)
T ss_pred cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhcccC-----
Confidence 345566778888888876544332 33 567889999999988432 23333 4679999999998775443321
Q ss_pred cccceeeEecccCceeeecCCCccEEEecCc
Q 014774 197 LEQCKLDFYGLGNCSLSVSCPKIQFLEVQGC 227 (419)
Q Consensus 197 l~~~~L~~l~~~~~~l~~~~~~L~~L~l~~~ 227 (419)
..+++....|+|+.|++...
T Consensus 131 -----------YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 131 -----------YRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred -----------ceeEEEEecCcceEeehhhh
Confidence 12344456788888888753
No 57
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=93.20 E-value=0.015 Score=47.36 Aligned_cols=15 Identities=13% Similarity=0.009 Sum_probs=8.6
Q ss_pred hhcccchhhHHHHhh
Q 014774 375 LKYGKNLKTMVIRIL 389 (419)
Q Consensus 375 l~~~~~L~~L~i~~~ 389 (419)
+.....|+.|.|.++
T Consensus 169 ig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGN 183 (264)
T ss_pred HHHHHHHHHHhcccc
Confidence 344566666666544
No 58
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=93.17 E-value=0.022 Score=58.16 Aligned_cols=62 Identities=23% Similarity=0.275 Sum_probs=27.6
Q ss_pred cccccCCCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccC
Q 014774 120 LDCISRAKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLG 183 (419)
Q Consensus 120 l~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~ 183 (419)
++.+...++|+.|+|++....+.| ....++.|+.|+|+++.++. +..-+..|+.|++|...+
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcC
Confidence 333444555555555554333333 23445555555555555332 112233455555555443
No 59
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.13 E-value=0.01 Score=54.76 Aligned_cols=33 Identities=30% Similarity=0.324 Sum_probs=17.6
Q ss_pred CCcCceeEeecccceEEEeccCCCCCcCEeeeC
Q 014774 235 TNCLRNLSISNNAGRVYMVDFGKLAALESLTLR 267 (419)
Q Consensus 235 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 267 (419)
.+.++.|+++++--.-.+.+.+.+..|+.|+++
T Consensus 434 l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS 466 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLS 466 (565)
T ss_pred hhcceeeecccchhhhcchhhhhhhhhheeccc
Confidence 455666666653100112234456678888884
No 60
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=92.72 E-value=0.15 Score=27.50 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=20.9
Q ss_pred CccEEEecCeeeChH-HHHHHHhcCC
Q 014774 150 KLQNLEIVGARLEDP-ALSTALRACP 174 (419)
Q Consensus 150 ~L~~L~L~~~~~~~~-~l~~l~~~~p 174 (419)
+||+|.|.++.+.++ .++.++.+||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 589999999996554 7899999997
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.66 E-value=0.26 Score=41.48 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=69.8
Q ss_pred CCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEe
Q 014774 126 AKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFY 205 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l 205 (419)
..+...++|++......+.+..+++|..|.+++++++.-+ ..+....|+|..|.+.+.....-..+
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl------------- 106 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDL------------- 106 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhc-------------
Confidence 3455667777766666666788899999999999865311 12345578888888876543211101
Q ss_pred cccCceeeecCCCccEEEecCccceeeccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCc
Q 014774 206 GLGNCSLSVSCPKIQFLEVQGCSWIRVQETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQW 271 (419)
Q Consensus 206 ~~~~~~l~~~~~~L~~L~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 271 (419)
.-...+|+|+.|.+-++..... .++. ..-+..+|+|+.||.++++.
T Consensus 107 -----~pLa~~p~L~~Ltll~Npv~~k--------------~~YR-~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 107 -----DPLASCPKLEYLTLLGNPVEHK--------------KNYR-LYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred -----chhccCCccceeeecCCchhcc--------------cCce-eEEEEecCcceEeehhhhhH
Confidence 1114568888888877644110 0111 12345689999999988875
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.27 E-value=0.1 Score=46.03 Aligned_cols=88 Identities=14% Similarity=0.172 Sum_probs=43.0
Q ss_pred HHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhhhh
Q 014774 312 EFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQM 391 (419)
Q Consensus 312 ~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~ 391 (419)
.+-..+|.|+.|.++-|....+. .-..|..|++|++.... +.+ ++.+++ +++.|+|+.|+|..+.
T Consensus 35 sic~kMp~lEVLsLSvNkIssL~---------pl~rCtrLkElYLRkN~-I~s---ldEL~Y-LknlpsLr~LWL~ENP- 99 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLSVNKISSLA---------PLQRCTRLKELYLRKNC-IES---LDELEY-LKNLPSLRTLWLDENP- 99 (388)
T ss_pred HHHHhcccceeEEeeccccccch---------hHHHHHHHHHHHHHhcc-ccc---HHHHHH-HhcCchhhhHhhccCC-
Confidence 33445566666666544332220 00125666666664322 222 222333 4666777777776552
Q ss_pred ccCCCchh-----HHHHHHhcccccCccee
Q 014774 392 KSSHSSSD-----DFFDEICRFRCMNRKIV 416 (419)
Q Consensus 392 ~~~~~~~~-----~~~~~~~~~~~~~~~~~ 416 (419)
|+..+. .....++++++++-+.|
T Consensus 100 --Cc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 100 --CCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred --cccccchhHHHHHHHHcccchhccCccc
Confidence 333222 23555666666666555
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=91.07 E-value=0.48 Score=45.00 Aligned_cols=130 Identities=18% Similarity=0.248 Sum_probs=70.2
Q ss_pred ccccCCCCccEEEecCccccCCcccccCCCccEEEecCee-eChHHHHHHHhcCCCCcEEEccCCCCccccccccccccc
Q 014774 121 DCISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGAR-LEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQ 199 (419)
Q Consensus 121 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~ 199 (419)
..+..|+++++|++.+|...+.|. --++|+.|.+++|. ++. +...+ .++|+.|.+.+|..+... |
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~sL----P---- 111 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEISGL----P---- 111 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCccccccc----c----
Confidence 345558999999999995544442 22469999999876 421 11112 368999999999655421 1
Q ss_pred ceeeEecccC--c-eeeecCCCccEEEecCccc---eeecc--CCcCceeEeecccceEEEeccCC-CCCcCEeeeC
Q 014774 200 CKLDFYGLGN--C-SLSVSCPKIQFLEVQGCSW---IRVQE--TNCLRNLSISNNAGRVYMVDFGK-LAALESLTLR 267 (419)
Q Consensus 200 ~~L~~l~~~~--~-~l~~~~~~L~~L~l~~~~~---~~l~~--~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~ 267 (419)
..|+.+.+.. | .+..-.++|+.|.+.+... ..++. .++|+.|.+.++..... ... .++|++|++.
T Consensus 112 ~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~L---P~~LP~SLk~L~ls 185 (426)
T PRK15386 112 ESVRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIIL---PEKLPESLQSITLH 185 (426)
T ss_pred cccceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccC---cccccccCcEEEec
Confidence 1233333221 1 1222235677777643211 11111 25677777765422111 111 2477777774
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.00 E-value=0.06 Score=47.43 Aligned_cols=79 Identities=19% Similarity=0.308 Sum_probs=43.9
Q ss_pred CcCceeEeecccceEEEeccC-CCCCcCEeeeCCCCchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHh
Q 014774 236 NCLRNLSISNNAGRVYMVDFG-KLAALESLTLRGVQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFF 314 (419)
Q Consensus 236 ~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~ 314 (419)
.++++|+++++ ...++.+. .++.|+.|.|+--.. ..+. -+..|++|++|+|+...+.+ ++-...+
T Consensus 19 ~~vkKLNcwg~--~L~DIsic~kMp~lEVLsLSvNkI--ssL~-pl~rCtrLkElYLRkN~I~s---------ldEL~YL 84 (388)
T KOG2123|consen 19 ENVKKLNCWGC--GLDDISICEKMPLLEVLSLSVNKI--SSLA-PLQRCTRLKELYLRKNCIES---------LDELEYL 84 (388)
T ss_pred HHhhhhcccCC--CccHHHHHHhcccceeEEeecccc--ccch-hHHHHHHHHHHHHHhccccc---------HHHHHHH
Confidence 34566666653 22223332 377888887732222 2222 25568888888886533333 2224556
Q ss_pred hcCCCeeEEEecCc
Q 014774 315 NNHPKLQKFDIHGA 328 (419)
Q Consensus 315 ~~~~~L~~L~l~~~ 328 (419)
.+.|+|+.|-|..|
T Consensus 85 knlpsLr~LWL~EN 98 (388)
T KOG2123|consen 85 KNLPSLRTLWLDEN 98 (388)
T ss_pred hcCchhhhHhhccC
Confidence 77788888776643
No 65
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=88.01 E-value=0.57 Score=25.65 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=20.1
Q ss_pred CCccEEEecCeeeChHHHHHHHhc
Q 014774 149 HKLQNLEIVGARLEDPALSTALRA 172 (419)
Q Consensus 149 ~~L~~L~L~~~~~~~~~l~~l~~~ 172 (419)
++|+.|+|+++.+++++...+.+.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 578999999999999888877653
No 66
>PF13013 F-box-like_2: F-box-like domain
Probab=87.37 E-value=0.48 Score=35.82 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=25.0
Q ss_pred CCCCcHHHHHHHHhCCCCHHHHHHhhccch
Q 014774 1 MDSLPDAIVQYILSHMKNARDVALCNCVSK 30 (419)
Q Consensus 1 ~~~LPd~ll~~I~~~L~~~~~~~~~~~vsk 30 (419)
+.+||+|++..||.+-+ ..+...+...|+
T Consensus 22 l~DLP~ELl~~I~~~C~-~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCN-DPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcC-cHHHHHHHHHHH
Confidence 45799999999999999 778877777777
No 67
>PLN03150 hypothetical protein; Provisional
Probab=86.96 E-value=0.85 Score=46.56 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=27.9
Q ss_pred ccEEEecCcccc-CCc-ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCC
Q 014774 129 LESLKLWGVLMV-SSP-KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEG 186 (419)
Q Consensus 129 L~~L~L~~~~~~-~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~ 186 (419)
++.|+|.++... ..+ .+..+++|+.|+|+++.+.. .+...+..+++|+.|+++++..
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~l 478 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSF 478 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCC
Confidence 455555544321 111 23455666666666665432 1222245566666666665543
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=86.78 E-value=1.7 Score=41.43 Aligned_cols=124 Identities=14% Similarity=0.276 Sum_probs=66.6
Q ss_pred CCceEEEEEecCccccccccCCCcccccccC-CCCccEEEecCccccCCcccccCCCccEEEecCee-eChHHHHHHHhc
Q 014774 95 STLKHLELRMDNLADYQGCLENPSKLDCISR-AKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGAR-LEDPALSTALRA 172 (419)
Q Consensus 95 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~-~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~ 172 (419)
..++.|.++... +..++. .++|++|.+.+|.......-.-.++|+.|++++|. +.. -
T Consensus 52 ~~l~~L~Is~c~-------------L~sLP~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~s--------L 110 (426)
T PRK15386 52 RASGRLYIKDCD-------------IESLPVLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISG--------L 110 (426)
T ss_pred cCCCEEEeCCCC-------------CcccCCCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccc--------c
Confidence 678888776332 223333 45799999999876432211123689999999984 431 1
Q ss_pred CCCCcEEEccCCCCcccccccccccccceeeEecccCce------ee-ecCCCccEEEecCccceeecc--CCcCceeEe
Q 014774 173 CPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCS------LS-VSCPKIQFLEVQGCSWIRVQE--TNCLRNLSI 243 (419)
Q Consensus 173 ~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~------l~-~~~~~L~~L~l~~~~~~~l~~--~~~L~~L~l 243 (419)
-++|+.|.+.+.. ..... ..| ..|+.+.+.+.. .. .-.++|+.|.+++|....++. ..+|+.|.+
T Consensus 111 P~sLe~L~L~~n~-~~~L~-~LP----ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~l 184 (426)
T PRK15386 111 PESVRSLEIKGSA-TDSIK-NVP----NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITL 184 (426)
T ss_pred ccccceEEeCCCC-Ccccc-cCc----chHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEe
Confidence 3568888876322 11110 011 122233221100 00 123578888888776544333 456777776
Q ss_pred ec
Q 014774 244 SN 245 (419)
Q Consensus 244 ~~ 245 (419)
+.
T Consensus 185 s~ 186 (426)
T PRK15386 185 HI 186 (426)
T ss_pred cc
Confidence 54
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=85.06 E-value=3.2 Score=36.93 Aligned_cols=122 Identities=16% Similarity=0.140 Sum_probs=68.5
Q ss_pred HHHHHhCCCcceEEEec-CCCc---chHHHHHHHhcCCceEEEEEecCccccccccCCC--cc---cccccCCCCccEEE
Q 014774 63 LKMIYSIVCLEELVVYT-PFSK---AGLDSWLMLAGSTLKHLELRMDNLADYQGCLENP--SK---LDCISRAKNLESLK 133 (419)
Q Consensus 63 ~~~l~~~~~L~~l~l~~-~~~~---~~~~~w~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~---l~~l~~~~~L~~L~ 133 (419)
.+++..+++++.++++- -|+. ..+...+. ....|.||.++....+.......+. .+ ....+.-|.|+...
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is-~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vi 163 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLIS-SSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVI 163 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHh-cCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence 34455578888888843 2322 22233332 3456888888755444211100000 01 11223467777766
Q ss_pred ecCccccCCc------ccccCCCccEEEecCeeeChHHHHHH----HhcCCCCcEEEccCCC
Q 014774 134 LWGVLMVSSP------KWDVFHKLQNLEIVGARLEDPALSTA----LRACPNLTNLLLLGCE 185 (419)
Q Consensus 134 L~~~~~~~~~------~~~~~~~L~~L~L~~~~~~~~~l~~l----~~~~p~L~~L~l~~c~ 185 (419)
.......+.+ .+....+|+.+.+..+.|..+++..+ +..|.+|+.|++....
T Consensus 164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 5444433333 12344689999999888877765544 3679999999997654
No 70
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=84.74 E-value=0.053 Score=54.08 Aligned_cols=53 Identities=23% Similarity=0.285 Sum_probs=29.0
Q ss_pred CCccEEEecCcccee---eccCCcCceeEeecc--cceEEEeccCCCCCcCEeeeCCC
Q 014774 217 PKIQFLEVQGCSWIR---VQETNCLRNLSISNN--AGRVYMVDFGKLAALESLTLRGV 269 (419)
Q Consensus 217 ~~L~~L~l~~~~~~~---l~~~~~L~~L~l~~~--~~~~~~~~~~~~~~L~~L~l~~~ 269 (419)
-+|+.|++.++.+.. +.+.++|..|+++++ .++.....++.+..|+.|.+.|-
T Consensus 232 c~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 232 CKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 347777777776633 334677777777664 22211112233556666666553
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.22 E-value=0.72 Score=40.42 Aligned_cols=67 Identities=22% Similarity=0.287 Sum_probs=41.6
Q ss_pred ccccCCCCccEEEecCcc-ccCCc---ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCc
Q 014774 121 DCISRAKNLESLKLWGVL-MVSSP---KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGV 187 (419)
Q Consensus 121 ~~l~~~~~L~~L~L~~~~-~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~ 187 (419)
..+...|+|+.|.++... .++.. ....+|+|+.|+++++.+.+-.-..-++..++|..|.+..|...
T Consensus 59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 344556788888887652 12111 22456999999999888664222222456777888888777543
No 72
>PLN03150 hypothetical protein; Provisional
Probab=83.09 E-value=2 Score=43.85 Aligned_cols=65 Identities=22% Similarity=0.255 Sum_probs=49.7
Q ss_pred cccCCCCccEEEecCcccc-CCc-ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCc
Q 014774 122 CISRAKNLESLKLWGVLMV-SSP-KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGV 187 (419)
Q Consensus 122 ~l~~~~~L~~L~L~~~~~~-~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~ 187 (419)
.+..+++|+.|+|+++... ..+ .+..+++|+.|+|++|.++.. +...+.++++|+.|+++++...
T Consensus 437 ~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 437 DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCccc
Confidence 4566889999999987543 333 468899999999999986532 2334678999999999988643
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=81.80 E-value=0.62 Score=46.27 Aligned_cols=35 Identities=26% Similarity=0.527 Sum_probs=32.6
Q ss_pred CCCCcHHHHHHHHhCCCCHHHHHHhhccchhHHHhh
Q 014774 1 MDSLPDAIVQYILSHMKNARDVALCNCVSKRWKESI 36 (419)
Q Consensus 1 ~~~LPd~ll~~I~~~L~~~~~~~~~~~vsk~w~~~~ 36 (419)
+..||.++-.+||.||+ .++..++++||+.|+.+.
T Consensus 108 i~~lp~el~~~il~~Ld-~~~l~~~~~v~~~w~~~~ 142 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLD-GRDLLAVRQVCRNWNKLL 142 (537)
T ss_pred hhcccchhcccccccCC-HHHhhhhhhhcchhhhhh
Confidence 46799999999999999 899999999999999976
No 74
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=81.21 E-value=1 Score=43.17 Aligned_cols=57 Identities=32% Similarity=0.306 Sum_probs=43.2
Q ss_pred CccEEEecCccccCCc-ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCC
Q 014774 128 NLESLKLWGVLMVSSP-KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEG 186 (419)
Q Consensus 128 ~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~ 186 (419)
+|+.|++.+......+ ....+++|+.|+++++.+++-. ......++|+.|.+++...
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~--~~~~~~~~L~~L~ls~N~i 198 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP--KLLSNLSNLNNLDLSGNKI 198 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCchhhhhh--hhhhhhhhhhheeccCCcc
Confidence 8999999887655543 4578999999999999876532 2233688999999987754
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=78.75 E-value=1.6 Score=20.66 Aligned_cols=9 Identities=22% Similarity=0.542 Sum_probs=3.3
Q ss_pred ccEEEecCe
Q 014774 151 LQNLEIVGA 159 (419)
Q Consensus 151 L~~L~L~~~ 159 (419)
|+.|++++|
T Consensus 3 L~~L~l~~n 11 (17)
T PF13504_consen 3 LRTLDLSNN 11 (17)
T ss_dssp -SEEEETSS
T ss_pred cCEEECCCC
Confidence 344444443
No 76
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=78.58 E-value=0.79 Score=29.34 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=29.8
Q ss_pred ccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHH
Q 014774 349 PCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIR 387 (419)
Q Consensus 349 p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~ 387 (419)
.+|+.+.+.+..+..++ ++.++.++++++.|++|.|.
T Consensus 14 s~Lk~v~~~~f~g~~~e--~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 14 SHLKFVEIKGFRGEENE--LEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred heeEEEEEEeeeCcHHH--HHHHHHHHhhhhhhcEEEEE
Confidence 67888888766665543 78899999999999998763
No 77
>smart00579 FBD domain in FBox and BRCT domain containing plant proteins.
Probab=76.81 E-value=2 Score=29.76 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=39.8
Q ss_pred ccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhhhhccCCCchhHHHHHHhcccc
Q 014774 349 PCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQMKSSHSSSDDFFDEICRFRC 410 (419)
Q Consensus 349 p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~ 410 (419)
.+|+.+.+.+..+..+ .+..++.++++++.|+++.|...... .+........+.++++
T Consensus 5 ~~Lk~v~i~~f~g~~~--e~~~~~~il~~a~~Lk~~~i~~~~~~--~~~~~~i~~~L~~~~~ 62 (72)
T smart00579 5 SSLEVLEIKGYRGTEE--EKELVKYFLENAPCLKKLTISVETSD--DDEKLEILKELLSLPR 62 (72)
T ss_pred heEEEEEEEeccCcHH--HHHHHHHHHhcchhheEEEEEeecCC--ccHHHHHHHHHHhCcC
Confidence 6688898877665443 37889999999999999999765321 1122344555666665
No 78
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=75.53 E-value=1.9 Score=41.58 Aligned_cols=106 Identities=15% Similarity=0.216 Sum_probs=53.9
Q ss_pred CCCCCcCEeeeCCCCchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhh
Q 014774 256 GKLAALESLTLRGVQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQ 335 (419)
Q Consensus 256 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~ 335 (419)
+.+.+|+.|++.+-.. ..+...+..+++|+.|.++...+++..++ ..++.|+.|++.+|....+..
T Consensus 92 ~~~~~l~~l~l~~n~i--~~i~~~l~~~~~L~~L~ls~N~I~~i~~l------------~~l~~L~~L~l~~N~i~~~~~ 157 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKI--EKIENLLSSLVNLQVLDLSFNKITKLEGL------------STLTLLKELNLSGNLISDISG 157 (414)
T ss_pred ccccceeeeeccccch--hhcccchhhhhcchheeccccccccccch------------hhccchhhheeccCcchhccC
Confidence 3455666666643322 33333355677777777765444442221 233447777777776554422
Q ss_pred cccccccccccccccccceeeeccCCCCchhhhhhHHhh-hhcccchhhHHHHhhhh
Q 014774 336 KNSLKNVESGFVIPCLEEVVVTVRSPLNAEQKMSTLESL-LKYGKNLKTMVIRILQM 391 (419)
Q Consensus 336 ~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~l-l~~~~~L~~L~i~~~~~ 391 (419)
. . .++.|+.++++++.-.. ++.. ++.+.+++.+.+..+..
T Consensus 158 ~---~------~l~~L~~l~l~~n~i~~-------ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 158 L---E------SLKSLKLLDLSYNRIVD-------IENDELSELISLEELDLGGNSI 198 (414)
T ss_pred C---c------cchhhhcccCCcchhhh-------hhhhhhhhccchHHHhccCCch
Confidence 1 1 13556666665543221 1111 35566666666665543
No 79
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=72.81 E-value=0.39 Score=48.30 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=15.4
Q ss_pred ccEEEecCccccCCcccccCCCccEEEecCee
Q 014774 129 LESLKLWGVLMVSSPKWDVFHKLQNLEIVGAR 160 (419)
Q Consensus 129 L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~ 160 (419)
|+.|.++|....+..++..+++|+.||++++-
T Consensus 234 L~~L~lrnN~l~tL~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTLRGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred heeeeecccHHHhhhhHHhhhhhhccchhHhh
Confidence 44444444333333344455555555665554
No 80
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=65.01 E-value=2.5 Score=40.79 Aligned_cols=60 Identities=22% Similarity=0.143 Sum_probs=30.3
Q ss_pred ccCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCC
Q 014774 123 ISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCE 185 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~ 185 (419)
+..+++|+.|++++.......+...++.|+.|++.+|.+++..- ...+++|+.+++.++.
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~---~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG---LESLKSLKLLDLSYNR 173 (414)
T ss_pred hhhhhcchheeccccccccccchhhccchhhheeccCcchhccC---CccchhhhcccCCcch
Confidence 33356666666666554444445555556666666665432110 1124555555555443
No 81
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=64.80 E-value=17 Score=27.99 Aligned_cols=56 Identities=16% Similarity=0.308 Sum_probs=23.6
Q ss_pred ccCCCCccEEEecC-ccccCCcccccCCCccEEEecCee--eChHHHHHHHhcCCCCcEEEcc
Q 014774 123 ISRAKNLESLKLWG-VLMVSSPKWDVFHKLQNLEIVGAR--LEDPALSTALRACPNLTNLLLL 182 (419)
Q Consensus 123 l~~~~~L~~L~L~~-~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~~p~L~~L~l~ 182 (419)
+..|.+|+.+.+.+ ...+....+..+++|+.+.+...- +.+. ...+|++|+.+.+.
T Consensus 8 F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~----~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNNLTSIGDN----AFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESSTTSCE-TT----TTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECCCeeEeChhhccccccccccccccccccccee----eeeccccccccccc
Confidence 33466677766653 222333345566667777766531 3322 23456666666664
No 82
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=59.61 E-value=6.6 Score=36.89 Aligned_cols=64 Identities=22% Similarity=0.276 Sum_probs=41.1
Q ss_pred cccCCCCccEEEecCccc--cCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCC
Q 014774 122 CISRAKNLESLKLWGVLM--VSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEG 186 (419)
Q Consensus 122 ~l~~~~~L~~L~L~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~ 186 (419)
++...++|+.|+|++... +.+..+.....++.|.|..+.+.. .-..++++..+|+.|++.+...
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L~~N~i 334 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEF-VSSGMFQGLSGLKTLSLYDNQI 334 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHH-HHHHhhhccccceeeeecCCee
Confidence 445577888888877543 222245667778888888777432 1124556778888888877654
No 83
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=58.37 E-value=8.8 Score=19.40 Aligned_cols=11 Identities=36% Similarity=0.709 Sum_probs=5.6
Q ss_pred ccEEEecCeee
Q 014774 151 LQNLEIVGARL 161 (419)
Q Consensus 151 L~~L~L~~~~~ 161 (419)
|+.|+|++|.+
T Consensus 2 L~~Ldls~n~l 12 (22)
T PF00560_consen 2 LEYLDLSGNNL 12 (22)
T ss_dssp ESEEEETSSEE
T ss_pred ccEEECCCCcC
Confidence 45555555543
No 84
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=56.57 E-value=7.1 Score=41.55 Aligned_cols=16 Identities=19% Similarity=0.061 Sum_probs=11.3
Q ss_pred ccccccceeeeccCCC
Q 014774 347 VIPCLEEVVVTVRSPL 362 (419)
Q Consensus 347 ~~p~L~~l~l~~~~~~ 362 (419)
..++|+.|.+..|...
T Consensus 715 ~l~~L~~L~i~~~~~~ 730 (889)
T KOG4658|consen 715 SLGNLEELSILDCGIS 730 (889)
T ss_pred cccCcceEEEEcCCCc
Confidence 3568888888777653
No 85
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=54.09 E-value=8.7 Score=33.87 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=28.2
Q ss_pred CCCCcHHHHHHHHhCCCCHHHHHHhhccchhHH
Q 014774 1 MDSLPDAIVQYILSHMKNARDVALCNCVSKRWK 33 (419)
Q Consensus 1 ~~~LPd~ll~~I~~~L~~~~~~~~~~~vsk~w~ 33 (419)
+.+||.+++..|+.+|++.+|+..++.|-..-.
T Consensus 202 l~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~ 234 (332)
T KOG3926|consen 202 LHDLPLECVLNILLRLSDHRDLESLAQAWETLA 234 (332)
T ss_pred cccchHHHHHHHHHHccCcchHHHHHHhhHHHH
Confidence 468999999999999999999999988865433
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=37.67 E-value=23 Score=18.52 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=6.9
Q ss_pred CCccEEEecCee
Q 014774 149 HKLQNLEIVGAR 160 (419)
Q Consensus 149 ~~L~~L~L~~~~ 160 (419)
++|+.|+|+++.
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00369 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 455666666554
No 87
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=37.67 E-value=23 Score=18.52 Aligned_cols=12 Identities=17% Similarity=0.451 Sum_probs=6.9
Q ss_pred CCccEEEecCee
Q 014774 149 HKLQNLEIVGAR 160 (419)
Q Consensus 149 ~~L~~L~L~~~~ 160 (419)
++|+.|+|+++.
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00370 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 455666666554
No 88
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=35.09 E-value=2.8 Score=41.15 Aligned_cols=38 Identities=18% Similarity=0.098 Sum_probs=18.1
Q ss_pred cCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCC
Q 014774 147 VFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEG 186 (419)
Q Consensus 147 ~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~ 186 (419)
..--|+.|.+++++++-... . +...+.|..|+.+.|+.
T Consensus 141 C~lpLkvli~sNNkl~~lp~-~-ig~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 141 CDLPLKVLIVSNNKLTSLPE-E-IGLLPTLAHLDVSKNEI 178 (722)
T ss_pred hcCcceeEEEecCccccCCc-c-cccchhHHHhhhhhhhh
Confidence 34456666666665321000 0 12445566666665543
No 89
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=31.86 E-value=22 Score=27.43 Aligned_cols=36 Identities=28% Similarity=0.222 Sum_probs=21.4
Q ss_pred ccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhhh
Q 014774 349 PCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQ 390 (419)
Q Consensus 349 p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~ 390 (419)
|+=+.+++.+.+.-.| +-.+++.||+|+.+.+-.+.
T Consensus 17 ~nE~~VHlAFRPSN~D------if~Lv~~CP~lk~iqiP~SY 52 (131)
T PF08004_consen 17 PNEEIVHLAFRPSNKD------IFSLVERCPNLKAIQIPPSY 52 (131)
T ss_pred CCceEEEEEecCcchH------HHHHHHhCCCCeEEeCChHH
Confidence 5666667766554333 33456778887777664443
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=26.26 E-value=38 Score=33.42 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=26.6
Q ss_pred ccCCCccEEEecCee-eChHHHHHHHhcCCCCcEEEccCC
Q 014774 146 DVFHKLQNLEIVGAR-LEDPALSTALRACPNLTNLLLLGC 184 (419)
Q Consensus 146 ~~~~~L~~L~L~~~~-~~~~~l~~l~~~~p~L~~L~l~~c 184 (419)
..++.+.++.|++++ ..-+.+..+.+..|+|..|+|++.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 345677777777777 444556667777777777777766
No 91
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=25.80 E-value=18 Score=33.03 Aligned_cols=37 Identities=35% Similarity=0.463 Sum_probs=32.7
Q ss_pred CCCcHHHHHHHHhCCCCHHHHHHhhccchhHHHhhccC
Q 014774 2 DSLPDAIVQYILSHMKNARDVALCNCVSKRWKESIPYL 39 (419)
Q Consensus 2 ~~LPd~ll~~I~~~L~~~~~~~~~~~vsk~w~~~~~~~ 39 (419)
..+|++++..|++++. .+++.+++.|+++-..+.++.
T Consensus 9 e~~~~~~l~~vls~~~-~~~~~~~a~vs~rLk~~~s~~ 45 (386)
T KOG4408|consen 9 EWLPRDPLHLVLSFLL-YRDLINCAYVSRRLKELGSHL 45 (386)
T ss_pred hhcccccceeeecccc-hhhhhcceeechHHhhhhhcc
Confidence 4688999999999999 999999999999999876544
No 92
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=24.83 E-value=52 Score=17.63 Aligned_cols=13 Identities=15% Similarity=0.509 Sum_probs=7.5
Q ss_pred CCccEEEecCeee
Q 014774 149 HKLQNLEIVGARL 161 (419)
Q Consensus 149 ~~L~~L~L~~~~~ 161 (419)
.+|+.|+++++.+
T Consensus 2 ~~L~~L~L~~NkI 14 (26)
T smart00365 2 TNLEELDLSQNKI 14 (26)
T ss_pred CccCEEECCCCcc
Confidence 4566666666554
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=21.40 E-value=94 Score=30.88 Aligned_cols=62 Identities=24% Similarity=0.152 Sum_probs=40.1
Q ss_pred cccccC-CCCccEEEecCccc--cCCccc--ccCCCccEEEecCeeeCh------HHHHHHHhcCCCCcEEEc
Q 014774 120 LDCISR-AKNLESLKLWGVLM--VSSPKW--DVFHKLQNLEIVGARLED------PALSTALRACPNLTNLLL 181 (419)
Q Consensus 120 l~~l~~-~~~L~~L~L~~~~~--~~~~~~--~~~~~L~~L~L~~~~~~~------~~l~~l~~~~p~L~~L~l 181 (419)
+..+.. .|+|+.|+|++... .+.... .....|+.|-+.++++.+ +-+.++.+..|+|..|+=
T Consensus 236 ~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LDG 308 (585)
T KOG3763|consen 236 LSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLDG 308 (585)
T ss_pred hhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeecC
Confidence 344555 78999999988622 222211 456778889999888322 345667778888877763
Done!