Query 014774
Match_columns 419
No_of_seqs 171 out of 2312
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 17:35:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014774.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014774hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 99.9 3.3E-23 1.1E-27 207.9 16.3 179 1-187 6-224 (594)
2 3ogk_B Coronatine-insensitive 99.9 1.2E-23 4.2E-28 211.0 11.6 364 2-387 14-444 (592)
3 2ast_B S-phase kinase-associat 99.8 1.4E-20 4.7E-25 175.2 13.9 280 1-382 9-299 (336)
4 3ogk_B Coronatine-insensitive 99.5 4E-14 1.4E-18 141.7 12.1 35 147-183 218-252 (592)
5 1z7x_W Ribonuclease inhibitor; 99.5 6E-14 2.1E-18 136.0 8.5 309 62-391 48-410 (461)
6 2p1m_B Transport inhibitor res 99.5 3.1E-14 1E-18 142.6 5.4 250 126-387 104-440 (594)
7 4fmz_A Internalin; leucine ric 99.4 4.5E-13 1.5E-17 124.9 12.5 232 123-391 84-323 (347)
8 4fmz_A Internalin; leucine ric 99.4 2.5E-12 8.6E-17 119.7 12.5 272 68-391 64-345 (347)
9 1z7x_W Ribonuclease inhibitor; 99.3 2.8E-12 9.5E-17 124.3 8.0 309 62-391 20-382 (461)
10 2ast_B S-phase kinase-associat 99.3 8.4E-12 2.9E-16 115.6 10.1 205 127-389 70-282 (336)
11 3o6n_A APL1; leucine-rich repe 99.3 8.2E-12 2.8E-16 118.3 8.7 162 123-292 89-256 (390)
12 3v47_A TOLL-like receptor 5B a 99.2 5.6E-12 1.9E-16 121.9 6.2 247 123-393 99-409 (455)
13 1o6v_A Internalin A; bacterial 99.2 1E-10 3.5E-15 113.5 12.4 239 123-392 86-344 (466)
14 3oja_B Anopheles plasmodium-re 99.2 3.3E-11 1.1E-15 120.6 8.7 120 123-245 95-220 (597)
15 1o6v_A Internalin A; bacterial 99.2 1E-10 3.5E-15 113.4 11.6 270 68-392 66-366 (466)
16 2id5_A Lingo-1, leucine rich r 99.1 6E-11 2.1E-15 115.4 8.4 243 122-391 75-332 (477)
17 3rgz_A Protein brassinosteroid 99.1 4.2E-11 1.4E-15 123.4 7.4 241 126-391 293-550 (768)
18 2ca6_A RAN GTPase-activating p 99.1 2.4E-11 8.3E-16 114.8 5.0 243 122-392 27-316 (386)
19 4fcg_A Uncharacterized protein 99.1 3.2E-11 1.1E-15 111.3 4.9 227 95-387 81-309 (328)
20 4fcg_A Uncharacterized protein 99.1 2.4E-10 8.2E-15 105.4 9.8 129 69-229 80-218 (328)
21 2id5_A Lingo-1, leucine rich r 99.1 5E-11 1.7E-15 116.0 5.4 244 122-392 51-309 (477)
22 3t6q_A CD180 antigen; protein- 99.1 8E-11 2.7E-15 118.1 6.7 169 122-293 273-458 (606)
23 3vq2_A TLR4, TOLL-like recepto 99.1 1.5E-10 5.3E-15 116.0 8.7 247 123-392 281-558 (606)
24 3vq2_A TLR4, TOLL-like recepto 99.1 4.2E-11 1.4E-15 120.1 4.4 217 126-364 327-560 (606)
25 3oja_B Anopheles plasmodium-re 99.1 2.1E-10 7.3E-15 114.7 9.4 110 66-186 71-183 (597)
26 3t6q_A CD180 antigen; protein- 99.1 2.4E-10 8.1E-15 114.7 9.7 20 373-392 541-560 (606)
27 3o6n_A APL1; leucine-rich repe 99.1 3.6E-10 1.2E-14 106.9 10.1 280 66-391 65-351 (390)
28 3bz5_A Internalin-J, INLJ; leu 99.1 2.5E-10 8.5E-15 110.2 9.0 240 123-392 81-331 (457)
29 1xku_A Decorin; proteoglycan, 99.1 6.7E-10 2.3E-14 102.5 11.2 156 215-387 169-327 (330)
30 3o53_A Protein LRIM1, AGAP0063 99.1 8.7E-11 3E-15 107.9 5.0 210 123-387 54-270 (317)
31 2z66_A Variable lymphocyte rec 99.0 1.6E-10 5.5E-15 105.5 5.8 214 126-360 27-259 (306)
32 1h6u_A Internalin H; cell adhe 99.0 7.3E-10 2.5E-14 101.2 10.1 169 122-330 58-229 (308)
33 2z7x_B TOLL-like receptor 1, v 99.0 5.3E-10 1.8E-14 110.0 9.7 105 65-186 40-150 (520)
34 2ft3_A Biglycan; proteoglycan, 99.0 1.7E-10 5.9E-15 106.6 5.4 153 218-387 173-328 (332)
35 3oja_A Leucine-rich immune mol 99.0 2.8E-10 9.5E-15 110.8 6.7 211 122-387 53-270 (487)
36 3j0a_A TOLL-like receptor 5; m 99.0 9.4E-11 3.2E-15 122.1 3.6 63 123-185 93-159 (844)
37 3rgz_A Protein brassinosteroid 99.0 1.9E-10 6.5E-15 118.5 5.7 198 122-330 313-526 (768)
38 1ziw_A TOLL-like receptor 3; i 99.0 6.8E-10 2.3E-14 112.9 8.7 100 146-246 326-440 (680)
39 2ca6_A RAN GTPase-activating p 99.0 3.5E-10 1.2E-14 106.8 6.1 116 255-386 212-337 (386)
40 2z66_A Variable lymphocyte rec 99.0 2.9E-10 9.9E-15 103.8 5.1 108 215-334 148-264 (306)
41 2z80_A TOLL-like receptor 2, v 99.0 7.1E-09 2.4E-13 96.6 14.5 152 122-293 71-231 (353)
42 3zyi_A Leucine-rich repeat-con 99.0 9.9E-10 3.4E-14 106.0 8.7 213 126-360 74-301 (452)
43 3zyj_A Leucine-rich repeat-con 99.0 7.1E-10 2.4E-14 106.7 7.5 59 126-185 63-123 (440)
44 1ziw_A TOLL-like receptor 3; i 99.0 1E-09 3.5E-14 111.6 8.6 40 347-391 403-442 (680)
45 2z80_A TOLL-like receptor 2, v 99.0 3.5E-10 1.2E-14 105.5 4.8 230 126-392 51-314 (353)
46 2z63_A TOLL-like receptor 4, v 99.0 4.3E-10 1.5E-14 111.8 5.7 239 123-393 278-532 (570)
47 4ecn_A Leucine-rich repeat pro 99.0 2.6E-09 8.8E-14 110.3 11.5 189 123-327 569-785 (876)
48 1h6u_A Internalin H; cell adhe 98.9 2.2E-09 7.5E-14 98.0 9.6 57 126-185 40-96 (308)
49 4eco_A Uncharacterized protein 98.9 2.8E-09 9.5E-14 107.4 10.7 125 121-246 241-387 (636)
50 3zyi_A Leucine-rich repeat-con 98.9 1E-09 3.4E-14 106.0 7.1 198 123-334 95-306 (452)
51 4ecn_A Leucine-rich repeat pro 98.9 1E-10 3.6E-15 120.7 0.0 68 316-391 751-818 (876)
52 2z81_A CD282 antigen, TOLL-lik 98.9 2.5E-09 8.6E-14 105.8 9.7 63 123-185 70-134 (549)
53 1ogq_A PGIP-2, polygalacturona 98.9 2.3E-09 7.7E-14 98.2 8.6 63 122-185 71-136 (313)
54 3zyj_A Leucine-rich repeat-con 98.9 1.5E-09 5.1E-14 104.4 7.4 198 123-334 84-295 (440)
55 1ozn_A Reticulon 4 receptor; N 98.9 2.3E-09 8E-14 96.7 8.1 18 314-331 221-238 (285)
56 3g06_A SSPH2 (leucine-rich rep 98.9 9.7E-09 3.3E-13 102.4 12.8 212 126-391 80-296 (622)
57 3v47_A TOLL-like receptor 5B a 98.9 9E-09 3.1E-13 99.3 11.9 128 216-361 274-407 (455)
58 3oja_A Leucine-rich immune mol 98.9 2.7E-10 9.2E-15 110.9 1.1 213 126-392 33-250 (487)
59 4eco_A Uncharacterized protein 98.9 3.4E-09 1.2E-13 106.7 8.8 190 122-327 325-545 (636)
60 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 3.2E-09 1.1E-13 105.4 8.3 40 347-392 471-510 (562)
61 1ozn_A Reticulon 4 receptor; N 98.9 3.7E-09 1.3E-13 95.3 7.8 199 126-362 31-238 (285)
62 2ft3_A Biglycan; proteoglycan, 98.9 2E-09 6.9E-14 99.4 6.1 242 95-359 78-330 (332)
63 3bz5_A Internalin-J, INLJ; leu 98.9 6.3E-09 2.1E-13 100.4 9.7 246 95-389 42-296 (457)
64 3goz_A Leucine-rich repeat-con 98.9 1.2E-09 4.3E-14 102.1 4.4 186 123-329 46-264 (362)
65 1h6t_A Internalin B; cell adhe 98.8 7E-09 2.4E-13 93.8 8.2 59 123-184 64-122 (291)
66 3j0a_A TOLL-like receptor 5; m 98.8 3.3E-09 1.1E-13 110.4 6.6 63 123-185 69-134 (844)
67 1wwl_A Monocyte differentiatio 98.8 3E-10 1E-14 104.0 -1.3 149 217-392 149-309 (312)
68 3goz_A Leucine-rich repeat-con 98.8 5.2E-09 1.8E-13 97.8 7.1 243 62-330 14-296 (362)
69 3o53_A Protein LRIM1, AGAP0063 98.8 5.8E-09 2E-13 95.6 6.8 213 126-392 33-250 (317)
70 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 3.7E-09 1.3E-13 68.6 3.7 35 1-36 9-43 (53)
71 3e4g_A ATP synthase subunit S, 98.8 3.9E-09 1.3E-13 86.5 4.6 88 96-192 62-157 (176)
72 3rfs_A Internalin B, repeat mo 98.8 7.8E-09 2.7E-13 92.6 7.1 65 256-331 154-218 (272)
73 1ogq_A PGIP-2, polygalacturona 98.8 5.9E-09 2E-13 95.4 5.7 244 70-363 50-305 (313)
74 1m9s_A Internalin B; cell inva 98.8 1.2E-08 4.2E-13 101.5 8.0 144 122-293 60-206 (605)
75 2z63_A TOLL-like receptor 4, v 98.7 2.2E-08 7.5E-13 99.5 9.4 236 95-361 282-530 (570)
76 2z81_A CD282 antigen, TOLL-lik 98.7 4.9E-08 1.7E-12 96.5 11.4 242 94-364 250-512 (549)
77 3e4g_A ATP synthase subunit S, 98.7 6.4E-09 2.2E-13 85.2 3.5 84 126-228 60-150 (176)
78 1xku_A Decorin; proteoglycan, 98.7 2.9E-08 9.8E-13 91.5 7.8 257 126-411 51-324 (330)
79 3a79_B TLR6, VLRB.59, TOLL-lik 98.7 2.9E-08 1E-12 98.4 8.0 106 70-186 52-158 (562)
80 2o6q_A Variable lymphocyte rec 98.6 3.4E-08 1.2E-12 88.2 6.8 59 126-185 36-96 (270)
81 1h6t_A Internalin B; cell adhe 98.6 1.3E-07 4.4E-12 85.4 10.6 167 124-330 43-212 (291)
82 4ezg_A Putative uncharacterize 98.6 5.6E-08 1.9E-12 82.4 7.6 56 126-184 43-98 (197)
83 2z62_A TOLL-like receptor 4, v 98.6 1.7E-08 5.9E-13 90.5 4.5 12 319-330 201-212 (276)
84 4glp_A Monocyte differentiatio 98.6 5.4E-08 1.8E-12 88.8 6.7 153 215-392 143-307 (310)
85 1wwl_A Monocyte differentiatio 98.6 5.3E-08 1.8E-12 89.0 6.2 37 126-162 94-134 (312)
86 3g06_A SSPH2 (leucine-rich rep 98.6 2.6E-07 8.9E-12 92.1 11.2 92 70-186 61-153 (622)
87 4glp_A Monocyte differentiatio 98.5 1.8E-08 6.2E-13 92.0 2.0 62 124-186 114-181 (310)
88 1jl5_A Outer protein YOPM; leu 98.5 7.9E-07 2.7E-11 85.6 13.5 130 95-245 131-266 (454)
89 2z62_A TOLL-like receptor 4, v 98.5 2.5E-07 8.6E-12 82.8 9.4 58 127-185 28-87 (276)
90 1m9s_A Internalin B; cell inva 98.5 1.4E-07 4.7E-12 93.9 7.9 56 126-184 42-97 (605)
91 3rfs_A Internalin B, repeat mo 98.5 1.8E-07 6.2E-12 83.6 7.5 152 121-293 57-214 (272)
92 1p9a_G Platelet glycoprotein I 98.5 1.4E-07 4.9E-12 85.1 5.8 173 126-334 30-211 (290)
93 1p9a_G Platelet glycoprotein I 98.4 6E-07 2.1E-11 81.0 9.3 198 123-362 6-208 (290)
94 1jl5_A Outer protein YOPM; leu 98.4 9.3E-07 3.2E-11 85.1 10.7 54 127-185 111-164 (454)
95 2xwt_C Thyrotropin receptor; s 98.4 1.6E-07 5.4E-12 82.2 4.6 59 127-186 31-92 (239)
96 4ezg_A Putative uncharacterize 98.4 2.7E-06 9.1E-11 71.9 11.9 59 125-184 64-122 (197)
97 2o6q_A Variable lymphocyte rec 98.4 6.6E-07 2.3E-11 79.8 8.4 163 122-334 56-221 (270)
98 1xeu_A Internalin C; cellular 98.4 8.6E-07 2.9E-11 78.7 8.0 143 122-293 36-181 (263)
99 3m19_A Variable lymphocyte rec 98.3 9.1E-07 3.1E-11 78.0 6.6 156 126-331 34-192 (251)
100 2xwt_C Thyrotropin receptor; s 98.3 1.3E-06 4.6E-11 76.2 7.2 83 95-186 31-117 (239)
101 1xeu_A Internalin C; cellular 98.3 1.9E-07 6.6E-12 83.0 1.5 163 128-330 20-184 (263)
102 2z7x_B TOLL-like receptor 1, v 98.3 7.7E-06 2.6E-10 80.1 13.1 159 126-335 323-485 (520)
103 2ell_A Acidic leucine-rich nuc 98.2 4E-06 1.4E-10 68.8 8.5 88 123-229 45-132 (168)
104 2je0_A Acidic leucine-rich nuc 98.2 5.1E-06 1.7E-10 66.6 7.8 88 123-229 38-125 (149)
105 2ell_A Acidic leucine-rich nuc 98.1 2.2E-06 7.4E-11 70.4 4.8 129 126-293 23-156 (168)
106 3cvr_A Invasion plasmid antige 98.1 5.8E-06 2E-10 81.4 8.2 158 127-330 80-242 (571)
107 3m19_A Variable lymphocyte rec 98.1 7.9E-06 2.7E-10 71.8 8.4 133 122-293 54-188 (251)
108 2je0_A Acidic leucine-rich nuc 98.1 1E-06 3.4E-11 70.8 2.1 58 126-186 16-76 (149)
109 3un9_A NLR family member X1; l 98.1 5E-07 1.7E-11 84.4 0.2 59 126-184 71-136 (372)
110 4g8a_A TOLL-like receptor 4; l 98.0 3.1E-05 1.1E-09 77.5 12.4 196 146-361 368-579 (635)
111 2ra8_A Uncharacterized protein 98.0 1.7E-05 6E-10 73.5 9.5 216 61-293 96-339 (362)
112 2e31_A FBS1, F-box only protei 98.0 3.7E-06 1.3E-10 74.6 4.2 35 1-36 51-86 (297)
113 2o6s_A Variable lymphocyte rec 97.9 1.8E-05 6.1E-10 67.3 7.4 59 126-185 27-87 (208)
114 4g8a_A TOLL-like receptor 4; l 97.9 4.9E-06 1.7E-10 83.4 3.8 165 215-403 418-590 (635)
115 4ay9_X Follicle-stimulating ho 97.9 2.1E-06 7.1E-11 79.7 0.9 61 126-186 29-91 (350)
116 3l2o_B F-box only protein 4; s 97.9 3.6E-06 1.2E-10 73.7 2.3 35 1-36 5-39 (312)
117 3un9_A NLR family member X1; l 97.8 3.5E-06 1.2E-10 78.7 1.4 161 146-330 69-251 (372)
118 2ra8_A Uncharacterized protein 97.8 2.5E-05 8.7E-10 72.4 6.8 38 147-184 137-182 (362)
119 1a9n_A U2A', U2A'; complex (nu 97.8 1E-05 3.5E-10 66.9 3.8 56 126-184 18-74 (176)
120 3e6j_A Variable lymphocyte rec 97.7 6.4E-05 2.2E-09 65.0 7.7 84 126-229 39-124 (229)
121 3cvr_A Invasion plasmid antige 97.7 4.5E-05 1.6E-09 75.1 7.3 169 70-268 59-239 (571)
122 2xot_A Amphoterin-induced prot 97.7 2.8E-05 9.4E-10 72.4 5.3 59 126-185 38-99 (361)
123 1a9n_A U2A', U2A'; complex (nu 97.7 1.9E-05 6.4E-10 65.3 2.9 137 144-330 14-152 (176)
124 2v9t_B SLIT homolog 2 protein 97.6 0.00012 4.1E-09 62.8 7.6 84 126-229 31-116 (220)
125 3sb4_A Hypothetical leucine ri 97.6 2.5E-05 8.7E-10 71.6 3.4 88 276-391 218-309 (329)
126 3e6j_A Variable lymphocyte rec 97.6 0.0001 3.5E-09 63.7 7.1 106 95-229 40-147 (229)
127 3sb4_A Hypothetical leucine ri 97.6 0.00032 1.1E-08 64.2 10.8 177 126-324 100-327 (329)
128 2o6s_A Variable lymphocyte rec 97.6 0.00014 4.9E-09 61.6 7.8 87 123-229 48-136 (208)
129 2v9t_B SLIT homolog 2 protein 97.5 0.00014 4.9E-09 62.3 6.5 88 122-229 51-140 (220)
130 2v70_A SLIT-2, SLIT homolog 2 97.5 9.2E-05 3.1E-09 63.5 5.2 57 127-184 32-91 (220)
131 2v70_A SLIT-2, SLIT homolog 2 97.4 0.0003 1E-08 60.3 7.6 124 149-293 32-162 (220)
132 1io0_A Tropomodulin; LRR prote 97.4 0.00014 4.8E-09 60.5 5.0 68 123-191 32-109 (185)
133 3v7d_B Cell division control p 97.4 4.7E-05 1.6E-09 73.0 2.3 35 2-37 16-50 (464)
134 1dce_A Protein (RAB geranylger 97.4 0.00013 4.5E-09 71.9 5.5 100 149-293 441-542 (567)
135 1io0_A Tropomodulin; LRR prote 97.3 0.00059 2E-08 56.7 8.0 124 54-185 20-162 (185)
136 1ds9_A Outer arm dynein; leuci 97.3 9.6E-06 3.3E-10 68.5 -3.2 59 124-184 45-103 (198)
137 4ay9_X Follicle-stimulating ho 97.3 0.0004 1.4E-08 64.1 7.3 143 123-268 50-211 (350)
138 2xot_A Amphoterin-induced prot 97.2 0.00059 2E-08 63.3 7.6 58 126-184 63-122 (361)
139 2ovr_B FBW7, F-BOX/WD repeat p 97.2 0.00022 7.5E-09 68.0 4.4 35 1-36 19-53 (445)
140 1dce_A Protein (RAB geranylger 97.1 0.00091 3.1E-08 65.9 7.8 59 123-184 459-518 (567)
141 1p22_A F-BOX/WD-repeat protein 97.1 0.00012 4.3E-09 69.6 1.2 34 2-36 12-49 (435)
142 2wfh_A SLIT homolog 2 protein 97.0 0.0018 6.3E-08 54.0 7.8 59 126-185 30-89 (193)
143 1w8a_A SLIT protein; signaling 97.0 0.0017 5.7E-08 54.2 7.2 57 127-184 29-88 (192)
144 2o6r_A Variable lymphocyte rec 96.9 0.0013 4.3E-08 54.1 5.7 59 125-184 50-110 (177)
145 2o6r_A Variable lymphocyte rec 96.9 0.0023 7.7E-08 52.5 7.1 60 126-186 27-88 (177)
146 1w8a_A SLIT protein; signaling 96.7 0.0033 1.1E-07 52.3 7.3 119 130-268 11-135 (192)
147 2wfh_A SLIT homolog 2 protein 96.6 0.0038 1.3E-07 52.1 6.9 88 122-229 49-138 (193)
148 4b8c_D Glucose-repressible alc 96.6 0.0012 4.2E-08 67.1 4.0 61 123-185 220-281 (727)
149 4fdw_A Leucine rich hypothetic 96.3 0.0061 2.1E-07 57.2 6.9 97 217-331 248-358 (401)
150 4fdw_A Leucine rich hypothetic 96.3 0.018 6.2E-07 54.0 10.0 52 128-184 136-190 (401)
151 1ds9_A Outer arm dynein; leuci 96.3 0.0019 6.5E-08 54.1 2.7 60 126-185 92-151 (198)
152 4b8c_D Glucose-repressible alc 96.2 0.0023 8E-08 65.1 3.2 103 144-268 219-325 (727)
153 2r9u_A Variable lymphocyte rec 96.0 0.0055 1.9E-07 50.1 4.3 63 123-186 53-117 (174)
154 3g39_A Variable lymphocyte rec 96.0 0.01 3.5E-07 48.2 5.7 84 126-229 29-114 (170)
155 4fs7_A Uncharacterized protein 95.9 0.019 6.4E-07 53.7 8.2 35 144-182 157-193 (394)
156 2r9u_A Variable lymphocyte rec 95.8 0.01 3.5E-07 48.5 5.2 84 126-229 32-117 (174)
157 3g39_A Variable lymphocyte rec 95.7 0.0085 2.9E-07 48.7 4.3 64 123-187 50-115 (170)
158 3rw6_A Nuclear RNA export fact 94.6 0.062 2.1E-06 47.0 6.6 57 125-181 194-258 (267)
159 2ifg_A High affinity nerve gro 93.6 0.049 1.7E-06 49.8 4.0 63 123-186 27-92 (347)
160 4fs7_A Uncharacterized protein 92.4 0.24 8.4E-06 46.0 7.0 56 123-183 181-239 (394)
161 4gt6_A Cell surface protein; l 92.1 1.4 4.7E-05 40.8 11.8 221 124-387 134-386 (394)
162 3rw6_A Nuclear RNA export fact 91.4 0.12 4.3E-06 45.1 3.5 37 148-184 169-206 (267)
163 2ifg_A High affinity nerve gro 90.4 0.13 4.4E-06 46.9 2.8 63 123-187 52-116 (347)
164 1pgv_A TMD-1, tropomodulin TMD 89.8 0.18 6.2E-06 41.7 2.8 118 258-390 40-168 (197)
165 1pgv_A TMD-1, tropomodulin TMD 89.5 1.4 4.7E-05 36.4 8.0 59 126-184 69-136 (197)
166 4h09_A Hypothetical leucine ri 76.8 8.5 0.00029 35.0 8.5 141 124-292 191-341 (379)
167 4gt6_A Cell surface protein; l 62.4 8.2 0.00028 35.5 4.9 78 124-208 285-365 (394)
168 3rfe_A Platelet glycoprotein I 60.5 13 0.00045 28.0 5.0 36 126-161 30-67 (130)
169 4h09_A Hypothetical leucine ri 38.4 18 0.00063 32.7 3.1 55 124-182 260-318 (379)
170 2lz0_A Uncharacterized protein 23.1 74 0.0025 22.5 3.4 36 123-158 16-52 (100)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=3.3e-23 Score=207.95 Aligned_cols=179 Identities=20% Similarity=0.193 Sum_probs=98.6
Q ss_pred CCCCcHHHHHHHHhCCCCHHHHHHhhccchhHHHhh-ccCCeeeecCCCC---------------------------CCC
Q 014774 1 MDSLPDAIVQYILSHMKNARDVALCNCVSKRWKESI-PYLKSLYFPRNSF---------------------------DNQ 52 (419)
Q Consensus 1 ~~~LPd~ll~~I~~~L~~~~~~~~~~~vsk~w~~~~-~~~~~l~~~~~~~---------------------------~~~ 52 (419)
++.||||+|.+||+||+..+|++++++|||+|+.+. ..+..+.+..... ...
T Consensus 6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~ 85 (594)
T 2p1m_B 6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLV 85 (594)
T ss_dssp ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCS
T ss_pred hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccc
Confidence 478999999999999998899999999999999873 2233344321000 000
Q ss_pred C-C-CCChHHHHHHHHHhCCCcceEEEec-CCCcchHHHHHHHhcCCceEEEEEecCccccccccCCCccccccc-CCCC
Q 014774 53 S-C-DNSPDDIVLKMIYSIVCLEELVVYT-PFSKAGLDSWLMLAGSTLKHLELRMDNLADYQGCLENPSKLDCIS-RAKN 128 (419)
Q Consensus 53 ~-~-~~~~~~~~~~~l~~~~~L~~l~l~~-~~~~~~~~~w~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~-~~~~ 128 (419)
+ . .......+..+.....+|++++++. ..+...+. .+....++|++|++.... ..++..+..+. .|++
T Consensus 86 ~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~~~~-------~~~~~~l~~~~~~~~~ 157 (594)
T 2p1m_B 86 PDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLSSCE-------GFSTDGLAAIAATCRN 157 (594)
T ss_dssp CTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEESCE-------EEEHHHHHHHHHHCTT
T ss_pred cccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCCCcC-------CCCHHHHHHHHHhCCC
Confidence 0 0 0111122333334445555655532 22221111 111123556666554221 01122233343 3778
Q ss_pred ccEEEecCccccCCc-c-----cccCCCccEEEecCee--eChHHHHHHHhcCCCCcEEEccCCCCc
Q 014774 129 LESLKLWGVLMVSSP-K-----WDVFHKLQNLEIVGAR--LEDPALSTALRACPNLTNLLLLGCEGV 187 (419)
Q Consensus 129 L~~L~L~~~~~~~~~-~-----~~~~~~L~~L~L~~~~--~~~~~l~~l~~~~p~L~~L~l~~c~~~ 187 (419)
|++|++.+|...... . ...+++|+.|+++++. +++..+..+..+||+|+.|++.+|...
T Consensus 158 L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 158 LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp CCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred CCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 888888776532211 1 1356788888888775 777777777777888888888877443
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=1.2e-23 Score=211.02 Aligned_cols=364 Identities=14% Similarity=0.078 Sum_probs=172.4
Q ss_pred CCCcHHHHHHHHhCCCCHHHHHHhhccchhHHHhhccC-CeeeecCCCCCC----------------------------C
Q 014774 2 DSLPDAIVQYILSHMKNARDVALCNCVSKRWKESIPYL-KSLYFPRNSFDN----------------------------Q 52 (419)
Q Consensus 2 ~~LPd~ll~~I~~~L~~~~~~~~~~~vsk~w~~~~~~~-~~l~~~~~~~~~----------------------------~ 52 (419)
++||||+|.+||+||++.+|++++++|||+|+.+.... ..+.+. ..+.. .
T Consensus 14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 92 (592)
T 3ogk_B 14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMA-LCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLI 92 (592)
T ss_dssp CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEES-CGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCS
T ss_pred CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEe-eccccChHHHHHhCCCCeEEEecCCcchhhcccc
Confidence 37999999999999943999999999999999975322 222221 11100 0
Q ss_pred C-C-CCChHHHHHHHHHhCCCcceEEEecCCCcchHHHHHHHhc-CCceEEEEEecCccccccccCCCccccccc-CCCC
Q 014774 53 S-C-DNSPDDIVLKMIYSIVCLEELVVYTPFSKAGLDSWLMLAG-STLKHLELRMDNLADYQGCLENPSKLDCIS-RAKN 128 (419)
Q Consensus 53 ~-~-~~~~~~~~~~~l~~~~~L~~l~l~~~~~~~~~~~w~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~-~~~~ 128 (419)
+ . .......+..+.....+|++|+++...-.+....|+.... .+|+.|++.... ...+..+..+. .|++
T Consensus 93 ~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~-------~~~~~~l~~~~~~~~~ 165 (592)
T 3ogk_B 93 PENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS-------GFTTDGLLSIVTHCRK 165 (592)
T ss_dssp CTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE-------EEEHHHHHHHHHHCTT
T ss_pred cccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC-------CcCHHHHHHHHhhCCC
Confidence 0 0 0000112222222334444444422111111122222111 124444443211 00111222222 2566
Q ss_pred ccEEEecCccccCCc-c-----cccCCCccEEEecCeeeC---hHHHHHHHhcCCCCcEEEccCCCCccccccccccccc
Q 014774 129 LESLKLWGVLMVSSP-K-----WDVFHKLQNLEIVGARLE---DPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQ 199 (419)
Q Consensus 129 L~~L~L~~~~~~~~~-~-----~~~~~~L~~L~L~~~~~~---~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~ 199 (419)
|++|+|.+|...... . ...+++|+.|+++++.++ +..+..+..+||+|++|++.+|...+.. ......
T Consensus 166 L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~---~~~~~~ 242 (592)
T 3ogk_B 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV---GFFKAA 242 (592)
T ss_dssp CSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH---HHHHHC
T ss_pred CCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH---HHHhhh
Confidence 666666655432211 1 134566666666655533 4555555666666666666665332210 000011
Q ss_pred ceeeEecccCc----------eeeecCCCccEEEecCcccee----eccCCcCceeEeecccc--eEEEeccCCCCCcCE
Q 014774 200 CKLDFYGLGNC----------SLSVSCPKIQFLEVQGCSWIR----VQETNCLRNLSISNNAG--RVYMVDFGKLAALES 263 (419)
Q Consensus 200 ~~L~~l~~~~~----------~l~~~~~~L~~L~l~~~~~~~----l~~~~~L~~L~l~~~~~--~~~~~~~~~~~~L~~ 263 (419)
..|+.+.++.+ .....+++|+.+.+.+..... +..+++|+.|+++++.- ......+..+++|++
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence 22333332211 011234556666665432211 12256677777765420 000001345677777
Q ss_pred eeeC-CCCchHHHHHHHhccCCcccEEEeee---eecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhH--hhhhcc
Q 014774 264 LTLR-GVQWCWDAISKMLYWASEVKHLYMKV---EFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFA--ALCQKN 337 (419)
Q Consensus 264 L~l~-~~~~~~~~l~~l~~~~~~L~~L~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~l~~~~ 337 (419)
|++. ++.+ .++..+...|++|++|++.. ..... +....+....+..+...+|+|++|+++.+.+. .+..
T Consensus 323 L~L~~~~~~--~~l~~~~~~~~~L~~L~L~~g~~~~~~~-~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~-- 397 (592)
T 3ogk_B 323 LETRNVIGD--RGLEVLAQYCKQLKRLRIERGADEQGME-DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES-- 397 (592)
T ss_dssp EEEEGGGHH--HHHHHHHHHCTTCCEEEEECCCCSSTTS-STTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH--
T ss_pred EeccCccCH--HHHHHHHHhCCCCCEEEeecCccccccc-cccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH--
Confidence 7774 2233 45666666777777777752 00000 00000111123444556777777777433221 1100
Q ss_pred cccccccccccccccceeeec---cCCCCchhhhhhHHhhhhcccchhhHHHH
Q 014774 338 SLKNVESGFVIPCLEEVVVTV---RSPLNAEQKMSTLESLLKYGKNLKTMVIR 387 (419)
Q Consensus 338 ~l~~l~~~~~~p~L~~l~l~~---~~~~~~~~~~~~l~~ll~~~~~L~~L~i~ 387 (419)
.+..+|+|+.|++++ +..+++......+..+++.|++|++|.+.
T Consensus 398 ------l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 398 ------IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp ------HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred ------HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEe
Confidence 111368999999985 45666532223466667889999999984
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1.4e-20 Score=175.19 Aligned_cols=280 Identities=21% Similarity=0.266 Sum_probs=166.3
Q ss_pred CCCCcHHHHHHHHhCCCCHHHHHHhhccchhHHHhh---ccCCeeeecCCCCCCCCCCCChHHHHHHHHHhCCCcceEEE
Q 014774 1 MDSLPDAIVQYILSHMKNARDVALCNCVSKRWKESI---PYLKSLYFPRNSFDNQSCDNSPDDIVLKMIYSIVCLEELVV 77 (419)
Q Consensus 1 ~~~LPd~ll~~I~~~L~~~~~~~~~~~vsk~w~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~l~l 77 (419)
+++||||++.+||+||+ .+|+++++.|||+|+.+. ..++.+++....+. ...+.++.. .+++.+.+
T Consensus 9 ~~~LP~eil~~If~~L~-~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~--------~~~~~~~~~--~~l~~L~l 77 (336)
T 2ast_B 9 WDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH--------PDVTGRLLS--QGVIAFRC 77 (336)
T ss_dssp SSSSCHHHHHHHHTTSC-HHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC--------HHHHHHHHH--TTCSEEEC
T ss_pred hhhCCHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCchhheeeccccccCC--------HHHHHhhhh--ccceEEEc
Confidence 57899999999999999 999999999999999985 34677777432211 122222211 23444443
Q ss_pred ecCCCcchHHHHHHHhcCCceEEEEEecCccccccccCCCcccccccCCCCccEEEecCccccCC--c-ccccCCCccEE
Q 014774 78 YTPFSKAGLDSWLMLAGSTLKHLELRMDNLADYQGCLENPSKLDCISRAKNLESLKLWGVLMVSS--P-KWDVFHKLQNL 154 (419)
Q Consensus 78 ~~~~~~~~~~~w~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~--~-~~~~~~~L~~L 154 (419)
...... . ....+..+++|++|+++++..... + .+..+++|+.|
T Consensus 78 -------------------------~~n~l~--------~-~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 78 -------------------------PRSFMD--------Q-PLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp -------------------------TTCEEC--------S-CCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred -------------------------CCcccc--------c-cchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 211111 0 011234578888888888763221 1 24678888888
Q ss_pred EecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEecccCceeeecCCCccEEEecCc-cceeec
Q 014774 155 EIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSLSVSCPKIQFLEVQGC-SWIRVQ 233 (419)
Q Consensus 155 ~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l~~~~~~L~~L~l~~~-~~~~l~ 233 (419)
++++|.+++.....+ ..+++|++|++++|..+++.++.. ....+++|+.|++++| .+..
T Consensus 124 ~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~-----------------~~~~~~~L~~L~l~~~~~l~~-- 183 (336)
T 2ast_B 124 SLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQT-----------------LLSSCSRLDELNLSWCFDFTE-- 183 (336)
T ss_dssp ECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHH-----------------HHHHCTTCCEEECCCCTTCCH--
T ss_pred eCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHH-----------------HHhcCCCCCEEcCCCCCCcCh--
Confidence 888888777655544 458888888888886555432211 1234577888888776 3310
Q ss_pred cCCcCceeEeecccceEEEeccCCCC-CcCEeeeCCCC--chHHHHHHHhccCCcccEEEeeeee-cCCCCCCcCCCCcC
Q 014774 234 ETNCLRNLSISNNAGRVYMVDFGKLA-ALESLTLRGVQ--WCWDAISKMLYWASEVKHLYMKVEF-TGDFDTLQPFPEVD 309 (419)
Q Consensus 234 ~~~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~--~~~~~l~~l~~~~~~L~~L~l~~~~-~~~~~~l~~~~~~~ 309 (419)
. +. ...+..++ +|++|++++.. .....+...+..+++|++|++.... .++ . .
T Consensus 184 -------~------~~--~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~-~--------~ 239 (336)
T 2ast_B 184 -------K------HV--QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN-D--------C 239 (336)
T ss_dssp -------H------HH--HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG-G--------G
T ss_pred -------H------HH--HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH-H--------H
Confidence 0 00 00123466 77777774431 1115666777789999999996522 333 1 1
Q ss_pred HHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeeccCCCCchhhhhhHHhhhhcccchh
Q 014774 310 FVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLK 382 (419)
Q Consensus 310 ~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~ 382 (419)
...+..+++|++|++++|...... .+..+ ..+|+|+.|++++| +++++ +..+.+.+|.|+
T Consensus 240 -~~~l~~l~~L~~L~l~~~~~~~~~---~~~~l---~~~~~L~~L~l~~~--i~~~~----~~~l~~~l~~L~ 299 (336)
T 2ast_B 240 -FQEFFQLNYLQHLSLSRCYDIIPE---TLLEL---GEIPTLKTLQVFGI--VPDGT----LQLLKEALPHLQ 299 (336)
T ss_dssp -GGGGGGCTTCCEEECTTCTTCCGG---GGGGG---GGCTTCCEEECTTS--SCTTC----HHHHHHHSTTSE
T ss_pred -HHHHhCCCCCCEeeCCCCCCCCHH---HHHHH---hcCCCCCEEeccCc--cCHHH----HHHHHhhCcceE
Confidence 122456789999999887421000 01001 12689999999887 66533 334334445444
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.52 E-value=4e-14 Score=141.75 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=17.2
Q ss_pred cCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccC
Q 014774 147 VFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLG 183 (419)
Q Consensus 147 ~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~ 183 (419)
.+++|+.|++++|.+.+ +...+..+++|++|.+.+
T Consensus 218 ~~~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HCTTCCEEECSSCBGGG--GHHHHHHCTTCCEEEECB
T ss_pred hCCCCcEEeccCccHHH--HHHHHhhhhHHHhhcccc
Confidence 45555555555554332 223444555555555543
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.47 E-value=6e-14 Score=136.03 Aligned_cols=309 Identities=16% Similarity=0.176 Sum_probs=152.8
Q ss_pred HHHHHHhCCCcceEEEec-CCCcchHHHHHHHhc---CCceEEEEEecCccccccccCCCcc-cccccCCCCccEEEecC
Q 014774 62 VLKMIYSIVCLEELVVYT-PFSKAGLDSWLMLAG---STLKHLELRMDNLADYQGCLENPSK-LDCISRAKNLESLKLWG 136 (419)
Q Consensus 62 ~~~~l~~~~~L~~l~l~~-~~~~~~~~~w~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~-l~~l~~~~~L~~L~L~~ 136 (419)
+...+...++|+.++++. .........+..... .+|++|+++...... .+... ...+..+++|++|++++
T Consensus 48 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~-----~~~~~l~~~l~~~~~L~~L~Ls~ 122 (461)
T 1z7x_W 48 ISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG-----AGCGVLSSTLRTLPTLQELHLSD 122 (461)
T ss_dssp HHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG-----GGHHHHHHHTTSCTTCCEEECCS
T ss_pred HHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCH-----HHHHHHHHHHccCCceeEEECCC
Confidence 344555567778877743 222222223322111 157777665332210 00011 23345577888888877
Q ss_pred ccccCCc--c-----cccCCCccEEEecCeeeChHH---HHHHHhcCCCCcEEEccCCCCccccccccccc----cccee
Q 014774 137 VLMVSSP--K-----WDVFHKLQNLEIVGARLEDPA---LSTALRACPNLTNLLLLGCEGVRSVSIELPHL----EQCKL 202 (419)
Q Consensus 137 ~~~~~~~--~-----~~~~~~L~~L~L~~~~~~~~~---l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l----~~~~L 202 (419)
+...... . ....++|+.|++++|.+++.. +...+..+++|++|+++++. +++.++..... ...+|
T Consensus 123 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L 201 (461)
T 1z7x_W 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQL 201 (461)
T ss_dssp SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCC
T ss_pred CcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCc
Confidence 6532211 1 122456888888887766543 33445667888888887775 33332222111 12256
Q ss_pred eEecccCceeee-----------cCCCccEEEecCcccee-----ec-----cCCcCceeEeecccceE-----EEeccC
Q 014774 203 DFYGLGNCSLSV-----------SCPKIQFLEVQGCSWIR-----VQ-----ETNCLRNLSISNNAGRV-----YMVDFG 256 (419)
Q Consensus 203 ~~l~~~~~~l~~-----------~~~~L~~L~l~~~~~~~-----l~-----~~~~L~~L~l~~~~~~~-----~~~~~~ 256 (419)
+.+++.+|.+.. .+++|+.|+++++.+.. +. ..+.|+.|+++++.-.. ....+.
T Consensus 202 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 281 (461)
T 1z7x_W 202 EALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281 (461)
T ss_dssp CEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred eEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh
Confidence 666666554221 35777777777765411 11 25677777776641000 001123
Q ss_pred CCCCcCEeeeCCCCchHHHHHHHh----ccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhH-
Q 014774 257 KLAALESLTLRGVQWCWDAISKML----YWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFA- 331 (419)
Q Consensus 257 ~~~~L~~L~l~~~~~~~~~l~~l~----~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~- 331 (419)
.+++|++|++++......+...+. ...++|++|+++....++ .+. ..+...+..+++|+.|++++|.+.
T Consensus 282 ~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~-~~~-----~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 282 AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA-ACC-----SHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG-GGH-----HHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch-HHH-----HHHHHHHhhCCCccEEEccCCcccc
Confidence 367777777744322112222222 223577777775422222 100 012344456678888888776542
Q ss_pred ----hhhhcccccccccccccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhhhh
Q 014774 332 ----ALCQKNSLKNVESGFVIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQM 391 (419)
Q Consensus 332 ----~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~ 391 (419)
.++. .++ ...++|+.|+++++ .+++++... +...+..+++|+.|.+..+.+
T Consensus 356 ~~~~~l~~--~l~-----~~~~~L~~L~L~~n-~i~~~~~~~-l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 356 AGVRELCQ--GLG-----QPGSVLRVLWLADC-DVSDSSCSS-LAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHH--HHT-----STTCCCCEEECTTS-CCCHHHHHH-HHHHHHHCCCCCEEECCSSSC
T ss_pred ccHHHHHH--HHc-----CCCCceEEEECCCC-CCChhhHHH-HHHHHHhCCCccEEECCCCCC
Confidence 1111 000 01356777777665 355544322 333345567777776665543
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.45 E-value=3.1e-14 Score=142.63 Aligned_cols=250 Identities=15% Similarity=0.166 Sum_probs=125.6
Q ss_pred CCCccEEEecCccccCCc---cc-ccCCCccEEEecCee-eChHHHHHHHhcCCCCcEEEccCCCCccccc---cccccc
Q 014774 126 AKNLESLKLWGVLMVSSP---KW-DVFHKLQNLEIVGAR-LEDPALSTALRACPNLTNLLLLGCEGVRSVS---IELPHL 197 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~---~~-~~~~~L~~L~L~~~~-~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~---~~~~~l 197 (419)
+++|++|+|.++.. ++. .+ ..+++|+.|++++|. +++.++..+..+||+|++|++.+|. +++.+ +.....
T Consensus 104 ~~~L~~L~L~~~~~-~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRLKRMVV-TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEEESCBC-CHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCT
T ss_pred CCCCCeEEeeCcEE-cHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhh
Confidence 66777777766542 221 11 246777777777774 6666666666677777777777665 33222 222222
Q ss_pred ccceeeEecccCce----------eeecCCCccEEEecCccc-e----eeccCCcCceeEeeccc---------------
Q 014774 198 EQCKLDFYGLGNCS----------LSVSCPKIQFLEVQGCSW-I----RVQETNCLRNLSISNNA--------------- 247 (419)
Q Consensus 198 ~~~~L~~l~~~~~~----------l~~~~~~L~~L~l~~~~~-~----~l~~~~~L~~L~l~~~~--------------- 247 (419)
.+.+|+.+++..|. +...+++|+.|++.+|.. . .+..+++|+.|.+..+.
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l 261 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHH
Confidence 34456666555442 112356667776666521 0 01123444444432110
Q ss_pred ----------ceEE--Eecc----CCCCCcCEeeeCCCCchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHH
Q 014774 248 ----------GRVY--MVDF----GKLAALESLTLRGVQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFV 311 (419)
Q Consensus 248 ----------~~~~--~~~~----~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~ 311 (419)
+... ...+ ..+++|++|++++.......+..++..+++|++|.+... .++ ..+.
T Consensus 262 ~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~---------~~l~ 331 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IED---------AGLE 331 (594)
T ss_dssp HTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHH---------HHHH
T ss_pred hcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCH---------HHHH
Confidence 0000 0001 135667777773322212455556666777777777532 111 1123
Q ss_pred HHhhcCCCeeEEEecC--------c-h-----hHhhhh-cccccccc-------------cccccccccceeee-----c
Q 014774 312 EFFNNHPKLQKFDIHG--------A-M-----FAALCQ-KNSLKNVE-------------SGFVIPCLEEVVVT-----V 358 (419)
Q Consensus 312 ~~~~~~~~L~~L~l~~--------~-~-----~~~l~~-~~~l~~l~-------------~~~~~p~L~~l~l~-----~ 358 (419)
.+...+++|+.|++.+ + . ...+.. .++++.|. ....+|+|+.|+++ +
T Consensus 332 ~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~ 411 (594)
T 2p1m_B 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKA 411 (594)
T ss_dssp HHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTC
T ss_pred HHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCC
Confidence 3444556666665522 1 0 011110 11233220 11136899999998 5
Q ss_pred cCCCCchhhhhhHHhhhhcccchhhHHHH
Q 014774 359 RSPLNAEQKMSTLESLLKYGKNLKTMVIR 387 (419)
Q Consensus 359 ~~~~~~~~~~~~l~~ll~~~~~L~~L~i~ 387 (419)
|..+++......+..+++.|++|+.|.+.
T Consensus 412 ~~~l~~~~~~~~~~~l~~~~~~L~~L~L~ 440 (594)
T 2p1m_B 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLS 440 (594)
T ss_dssp CCTTTCCCTHHHHHHHHHHCTTCCEEECC
T ss_pred cccccCCchhhHHHHHHhhCCCccEEeec
Confidence 66777332223456667889999999884
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.45 E-value=4.5e-13 Score=124.86 Aligned_cols=232 Identities=13% Similarity=0.117 Sum_probs=122.6
Q ss_pred ccCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCccccccccccccccee
Q 014774 123 ISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKL 202 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L 202 (419)
+..+++|++|++.++.....+.+..+++|+.|+++++.+++... +..+++|+.|++++|........ ......|
T Consensus 84 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~---~~~l~~L 157 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSP---LSNMTGL 157 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGG---GTTCTTC
T ss_pred hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccc---hhhCCCC
Confidence 45567777777776654444455667777777777776543221 45677777777777754443211 1122345
Q ss_pred eEecccCcee-----eecCCCccEEEecCccceee---ccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHH
Q 014774 203 DFYGLGNCSL-----SVSCPKIQFLEVQGCSWIRV---QETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWD 274 (419)
Q Consensus 203 ~~l~~~~~~l-----~~~~~~L~~L~l~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 274 (419)
+.+.+.+|.+ ...+++|+.|++++|.+..+ ...+.|+.+.++++.-. ....+..+++|++|++++... .
T Consensus 158 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~L~~L~l~~n~l--~ 234 (347)
T 4fmz_A 158 NYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQIT-DITPVANMTRLNSLKIGNNKI--T 234 (347)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC-CCGGGGGCTTCCEEECCSSCC--C
T ss_pred cEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCC-CCchhhcCCcCCEEEccCCcc--C
Confidence 5555544431 23456777777777665332 23566666666653110 011144567777777743222 1
Q ss_pred HHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccce
Q 014774 275 AISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEV 354 (419)
Q Consensus 275 ~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l 354 (419)
.+.. +..+++|++|+++....++ + ..+..+++|+.|++++|.+..+ ..-..+++|+.|
T Consensus 235 ~~~~-~~~l~~L~~L~l~~n~l~~---------~---~~~~~l~~L~~L~l~~n~l~~~---------~~~~~l~~L~~L 292 (347)
T 4fmz_A 235 DLSP-LANLSQLTWLEIGTNQISD---------I---NAVKDLTKLKMLNVGSNQISDI---------SVLNNLSQLNSL 292 (347)
T ss_dssp CCGG-GTTCTTCCEEECCSSCCCC---------C---GGGTTCTTCCEEECCSSCCCCC---------GGGGGCTTCSEE
T ss_pred CCcc-hhcCCCCCEEECCCCccCC---------C---hhHhcCCCcCEEEccCCccCCC---------hhhcCCCCCCEE
Confidence 1111 5567777777775422222 1 1234566777777776543211 011124667777
Q ss_pred eeeccCCCCchhhhhhHHhhhhcccchhhHHHHhhhh
Q 014774 355 VVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQM 391 (419)
Q Consensus 355 ~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~ 391 (419)
+++++. +++ .....+..+++|+.|.+..+.+
T Consensus 293 ~L~~n~-l~~-----~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 293 FLNNNQ-LGN-----EDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp ECCSSC-CCG-----GGHHHHHTCTTCSEEECCSSSC
T ss_pred ECcCCc-CCC-----cChhHhhccccCCEEEccCCcc
Confidence 776653 332 1223345567777776665544
No 8
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.38 E-value=2.5e-12 Score=119.74 Aligned_cols=272 Identities=14% Similarity=0.138 Sum_probs=175.4
Q ss_pred hCCCcceEEEec-CCCcchHHHHHHHhcCCceEEEEEecCccccccccCCCcccccccCCCCccEEEecCccccCCcccc
Q 014774 68 SIVCLEELVVYT-PFSKAGLDSWLMLAGSTLKHLELRMDNLADYQGCLENPSKLDCISRAKNLESLKLWGVLMVSSPKWD 146 (419)
Q Consensus 68 ~~~~L~~l~l~~-~~~~~~~~~w~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~~~~~ 146 (419)
...+|+.+.++. ...... . ....+.|+.|++...... .+..+..+++|++|++.++.....+.+.
T Consensus 64 ~~~~L~~L~l~~n~i~~~~--~--~~~l~~L~~L~L~~n~i~----------~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 129 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDIS--P--LSNLVKLTNLYIGTNKIT----------DISALQNLTNLRELYLNEDNISDISPLA 129 (347)
T ss_dssp GCTTCCEEECCSSCCCCCG--G--GTTCTTCCEEECCSSCCC----------CCGGGTTCTTCSEEECTTSCCCCCGGGT
T ss_pred hcCCccEEEccCCccccch--h--hhcCCcCCEEEccCCccc----------CchHHcCCCcCCEEECcCCcccCchhhc
Confidence 457888998843 322211 1 113477888877643322 1345667899999999988765555677
Q ss_pred cCCCccEEEecCee-eChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEecccCcee-----eecCCCcc
Q 014774 147 VFHKLQNLEIVGAR-LEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSL-----SVSCPKIQ 220 (419)
Q Consensus 147 ~~~~L~~L~L~~~~-~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l-----~~~~~~L~ 220 (419)
.+++|+.|++++|. .++.. .+..+++|+.|++.+|.......+ ....+|+.+++.++.+ ...+++|+
T Consensus 130 ~l~~L~~L~l~~n~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~l~~L~ 202 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNLSDLS---PLSNMTGLNYLTVTESKVKDVTPI----ANLTDLYSLSLNYNQIEDISPLASLTSLH 202 (347)
T ss_dssp TCTTCCEEECTTCTTCCCCG---GGTTCTTCCEEECCSSCCCCCGGG----GGCTTCSEEECTTSCCCCCGGGGGCTTCC
T ss_pred cCCceeEEECCCCCCccccc---chhhCCCCcEEEecCCCcCCchhh----ccCCCCCEEEccCCcccccccccCCCccc
Confidence 88999999999985 33211 157899999999998865433221 1234666776665542 24568999
Q ss_pred EEEecCcccee---eccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHHHHHHhccCCcccEEEeeeeecC
Q 014774 221 FLEVQGCSWIR---VQETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDAISKMLYWASEVKHLYMKVEFTG 297 (419)
Q Consensus 221 ~L~l~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 297 (419)
.+++.++.+.. +..+++|+.|+++++.-. ....+..+++|++|++++... ..+ ..+..+++|+.|+++.....
T Consensus 203 ~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l--~~~-~~~~~l~~L~~L~l~~n~l~ 278 (347)
T 4fmz_A 203 YFTAYVNQITDITPVANMTRLNSLKIGNNKIT-DLSPLANLSQLTWLEIGTNQI--SDI-NAVKDLTKLKMLNVGSNQIS 278 (347)
T ss_dssp EEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCC--CCC-GGGTTCTTCCEEECCSSCCC
T ss_pred eeecccCCCCCCchhhcCCcCCEEEccCCccC-CCcchhcCCCCCEEECCCCcc--CCC-hhHhcCCCcCEEEccCCccC
Confidence 99999887633 344789999999875211 111256789999999954322 112 23667899999999753333
Q ss_pred CCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeeccCCCCchhhhhhHHhhhhc
Q 014774 298 DFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRSPLNAEQKMSTLESLLKY 377 (419)
Q Consensus 298 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~ 377 (419)
+ + ..+..+++|+.|++++|.+...-. ..+ ..+|+|+.|+++++. +++ +.. +..
T Consensus 279 ~---------~---~~~~~l~~L~~L~L~~n~l~~~~~-~~l------~~l~~L~~L~L~~n~-l~~------~~~-~~~ 331 (347)
T 4fmz_A 279 D---------I---SVLNNLSQLNSLFLNNNQLGNEDM-EVI------GGLTNLTTLFLSQNH-ITD------IRP-LAS 331 (347)
T ss_dssp C---------C---GGGGGCTTCSEEECCSSCCCGGGH-HHH------HTCTTCSEEECCSSS-CCC------CGG-GGG
T ss_pred C---------C---hhhcCCCCCCEEECcCCcCCCcCh-hHh------hccccCCEEEccCCc-ccc------ccC-hhh
Confidence 3 1 235678999999999886532100 001 125899999999876 443 111 567
Q ss_pred ccchhhHHHHhhhh
Q 014774 378 GKNLKTMVIRILQM 391 (419)
Q Consensus 378 ~~~L~~L~i~~~~~ 391 (419)
+++|+.|.+..+.+
T Consensus 332 l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 332 LSKMDSADFANQVI 345 (347)
T ss_dssp CTTCSEESSSCC--
T ss_pred hhccceeehhhhcc
Confidence 89999998875543
No 9
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.30 E-value=2.8e-12 Score=124.26 Aligned_cols=309 Identities=16% Similarity=0.169 Sum_probs=179.4
Q ss_pred HHHHHHhCCCcceEEEe-cCCCcchH---HHHHHHhcCCceEEEEEecCccccccccCCCcccccccC-CC----CccEE
Q 014774 62 VLKMIYSIVCLEELVVY-TPFSKAGL---DSWLMLAGSTLKHLELRMDNLADYQGCLENPSKLDCISR-AK----NLESL 132 (419)
Q Consensus 62 ~~~~l~~~~~L~~l~l~-~~~~~~~~---~~w~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~-~~----~L~~L 132 (419)
...++...++++.+.++ +....... ...+. ..+.|++|+++..... +..+..+.. ++ +|++|
T Consensus 20 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~--------~~~~~~l~~~l~~~~~~L~~L 90 (461)
T 1z7x_W 20 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALR-VNPALAELNLRSNELG--------DVGVHCVLQGLQTPSCKIQKL 90 (461)
T ss_dssp HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHH-TCTTCCEEECTTCCCH--------HHHHHHHHHTTCSTTCCCCEE
T ss_pred HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHH-hCCCcCEEeCCCCcCC--------hHHHHHHHHHHhhCCCceeEE
Confidence 34455667889999994 44443221 22221 3478898887643322 212222222 33 79999
Q ss_pred EecCccccCCc------ccccCCCccEEEecCeeeChHHHHHHHhc----CCCCcEEEccCCCCccccccccc---cccc
Q 014774 133 KLWGVLMVSSP------KWDVFHKLQNLEIVGARLEDPALSTALRA----CPNLTNLLLLGCEGVRSVSIELP---HLEQ 199 (419)
Q Consensus 133 ~L~~~~~~~~~------~~~~~~~L~~L~L~~~~~~~~~l~~l~~~----~p~L~~L~l~~c~~~~~~~~~~~---~l~~ 199 (419)
+++++...... .+..+++|+.|+++++.+++.+...+... .++|++|++++|.. ++.+.... -..+
T Consensus 91 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l-~~~~~~~l~~~l~~~ 169 (461)
T 1z7x_W 91 SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL-SAASCEPLASVLRAK 169 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-BGGGHHHHHHHHHHC
T ss_pred EccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCC-CHHHHHHHHHHHhhC
Confidence 99988644321 24678999999999999888777766553 56799999998853 33222111 1123
Q ss_pred ceeeEecccCceee------------ecCCCccEEEecCcccee-----ec----cCCcCceeEeeccc----ceEE--E
Q 014774 200 CKLDFYGLGNCSLS------------VSCPKIQFLEVQGCSWIR-----VQ----ETNCLRNLSISNNA----GRVY--M 252 (419)
Q Consensus 200 ~~L~~l~~~~~~l~------------~~~~~L~~L~l~~~~~~~-----l~----~~~~L~~L~l~~~~----~~~~--~ 252 (419)
.+|+.++++++.+. ...++|+.|++++|.+.. ++ .+++|+.|+++++. +... .
T Consensus 170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 249 (461)
T 1z7x_W 170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP 249 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHH
Confidence 47777777766421 124689999998886532 22 36888888888751 0000 0
Q ss_pred eccCCCCCcCEeeeCCCCchHHH---HHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHH-HhhcCCCeeEEEecCc
Q 014774 253 VDFGKLAALESLTLRGVQWCWDA---ISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVE-FFNNHPKLQKFDIHGA 328 (419)
Q Consensus 253 ~~~~~~~~L~~L~l~~~~~~~~~---l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~-~~~~~~~L~~L~l~~~ 328 (419)
.....+++|++|++++......+ +...+..+++|++|+++....++ .+. ..+.. +....++|++|++++|
T Consensus 250 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~-~~~-----~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD-EGA-----RLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH-HHH-----HHHHHHHTSTTCCCCEEECTTS
T ss_pred HHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCch-HHH-----HHHHHHhccCCccceeeEcCCC
Confidence 01124788999999543321132 55556678999999986422222 100 00111 1223468999999887
Q ss_pred hhHhhhhcccccccc-cccccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhhhh
Q 014774 329 MFAALCQKNSLKNVE-SGFVIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQM 391 (419)
Q Consensus 329 ~~~~l~~~~~l~~l~-~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~ 391 (419)
.+.... ...+. .-..+++|+.|+++++ .+++.+.....+.+-+.+++|+.|.+..+.+
T Consensus 324 ~l~~~~----~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 324 SFTAAC----CSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp CCBGGG----HHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred CCchHH----HHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 643110 00000 0012589999999987 5676554443344333478999998876543
No 10
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.29 E-value=8.4e-12 Score=115.60 Aligned_cols=205 Identities=15% Similarity=0.202 Sum_probs=141.9
Q ss_pred CCccEEEecCccccCCc-ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEe
Q 014774 127 KNLESLKLWGVLMVSSP-KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFY 205 (419)
Q Consensus 127 ~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l 205 (419)
++++.|++.++...... ....+++|+.|++++|.+++..+..++..|++|++|++++|. +++.....
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~----------- 137 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNT----------- 137 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHH-----------
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHH-----------
Confidence 78999999886543332 456789999999999999988898899999999999999985 33221111
Q ss_pred cccCceeeecCCCccEEEecCccceeeccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCC-CchHHHHHHHhccCC
Q 014774 206 GLGNCSLSVSCPKIQFLEVQGCSWIRVQETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGV-QWCWDAISKMLYWAS 284 (419)
Q Consensus 206 ~~~~~~l~~~~~~L~~L~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~l~~l~~~~~ 284 (419)
...+++|+.|++++|.. ++.- + ....+.++++|++|++++. .....++...+..+|
T Consensus 138 -------l~~~~~L~~L~L~~~~~--------l~~~------~--l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 138 -------LAKNSNLVRLNLSGCSG--------FSEF------A--LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp -------HTTCTTCSEEECTTCBS--------CCHH------H--HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred -------HhcCCCCCEEECCCCCC--------CCHH------H--HHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 12368889999988731 1100 0 0001335788999999543 322255777888999
Q ss_pred -cccEEEeeee--ecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchh-H--hhhhcccccccccccccccccceeeec
Q 014774 285 -EVKHLYMKVE--FTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMF-A--ALCQKNSLKNVESGFVIPCLEEVVVTV 358 (419)
Q Consensus 285 -~L~~L~l~~~--~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~--~l~~~~~l~~l~~~~~~p~L~~l~l~~ 358 (419)
+|++|+++.. ..++ ..+...+..+++|+.|++++|.. . .+. .+ ..+++|+.|++++
T Consensus 195 ~~L~~L~l~~~~~~~~~---------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~---~l------~~l~~L~~L~l~~ 256 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQK---------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ---EF------FQLNYLQHLSLSR 256 (336)
T ss_dssp TTCCEEECCSCGGGSCH---------HHHHHHHHHCTTCSEEECTTCTTCCGGGGG---GG------GGCTTCCEEECTT
T ss_pred cCCCEEEeCCCcccCCH---------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHH---HH------hCCCCCCEeeCCC
Confidence 9999999652 2332 12455677899999999998863 2 111 11 1259999999999
Q ss_pred cCCCCchhhhhhHHhhhhcccchhhHHHHhh
Q 014774 359 RSPLNAEQKMSTLESLLKYGKNLKTMVIRIL 389 (419)
Q Consensus 359 ~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~ 389 (419)
|..++++++ . .+..+|+|+.|.+..+
T Consensus 257 ~~~~~~~~~----~-~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 257 CYDIIPETL----L-ELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCGGGG----G-GGGGCTTCCEEECTTS
T ss_pred CCCCCHHHH----H-HHhcCCCCCEEeccCc
Confidence 987776432 2 2456999999999765
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.26 E-value=8.2e-12 Score=118.27 Aligned_cols=162 Identities=15% Similarity=0.055 Sum_probs=76.9
Q ss_pred ccCCCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccc
Q 014774 123 ISRAKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQC 200 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~ 200 (419)
+..+++|++|++.++.....+ .+..+++|+.|+++++.++.-. ..++..+++|++|+++++.......-.. ....
T Consensus 89 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~ 165 (390)
T 3o6n_A 89 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERIEDDTF--QATT 165 (390)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTT--SSCT
T ss_pred ccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCC-HHHhcCCCCCcEEECCCCccCccChhhc--cCCC
Confidence 444667777777765543332 2456677777777777644211 1123556777777777664322110000 0112
Q ss_pred eeeEecccCcee----eecCCCccEEEecCccceeeccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHHH
Q 014774 201 KLDFYGLGNCSL----SVSCPKIQFLEVQGCSWIRVQETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDAI 276 (419)
Q Consensus 201 ~L~~l~~~~~~l----~~~~~~L~~L~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l 276 (419)
+|+.+.+.++.+ ....++|+.++++++.+..++..+.++.|+++++.-. .......++|+.|++++... ...
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~L~~L~l~~n~l--~~~ 241 (390)
T 3o6n_A 166 SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN--VVRGPVNVELTILKLQHNNL--TDT 241 (390)
T ss_dssp TCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCC--EEECCCCSSCCEEECCSSCC--CCC
T ss_pred CCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeee--eccccccccccEEECCCCCC--ccc
Confidence 445554444321 1234566666666655544444555666665553111 11112234555555532111 001
Q ss_pred HHHhccCCcccEEEee
Q 014774 277 SKMLYWASEVKHLYMK 292 (419)
Q Consensus 277 ~~l~~~~~~L~~L~l~ 292 (419)
..+..+++|++|+++
T Consensus 242 -~~l~~l~~L~~L~Ls 256 (390)
T 3o6n_A 242 -AWLLNYPGLVEVDLS 256 (390)
T ss_dssp -GGGGGCTTCSEEECC
T ss_pred -HHHcCCCCccEEECC
Confidence 123445555555554
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.24 E-value=5.6e-12 Score=121.90 Aligned_cols=247 Identities=16% Similarity=0.194 Sum_probs=119.2
Q ss_pred ccCCCCccEEEecCccccCC-c---ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccc
Q 014774 123 ISRAKNLESLKLWGVLMVSS-P---KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLE 198 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~-~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~ 198 (419)
+..+++|++|++.++..... + .+..+++|+.|+++++.++...-..++.++++|++|+++++.......-....+.
T Consensus 99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 178 (455)
T 3v47_A 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178 (455)
T ss_dssp TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT
T ss_pred ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc
Confidence 44466777777766643221 1 1456677777777777654322222345677777777776643222111111112
Q ss_pred cceeeEecccCceee---------------ecCCCccEEEecCcccee-----ec---c---------------------
Q 014774 199 QCKLDFYGLGNCSLS---------------VSCPKIQFLEVQGCSWIR-----VQ---E--------------------- 234 (419)
Q Consensus 199 ~~~L~~l~~~~~~l~---------------~~~~~L~~L~l~~~~~~~-----l~---~--------------------- 234 (419)
...++.+.+.++.+. ...++|+.|+++++.+.. +. .
T Consensus 179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch
Confidence 224444444333211 022456666666553310 00 0
Q ss_pred ---------------CCcCceeEeecccceEE-EeccCCCCCcCEeeeCCCCchHHHHHHHhccCCcccEEEeeeeecCC
Q 014774 235 ---------------TNCLRNLSISNNAGRVY-MVDFGKLAALESLTLRGVQWCWDAISKMLYWASEVKHLYMKVEFTGD 298 (419)
Q Consensus 235 ---------------~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~ 298 (419)
.+.++.++++++.-... ...++.+++|++|++++.... ......+..+++|++|+++....+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCE
T ss_pred hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc-ccChhHhcCcccCCEEECCCCccCC
Confidence 13455555554311100 112344566666666332110 0011123456666666664321211
Q ss_pred CCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeeccCCCCchhhhhhHHhhhhcc
Q 014774 299 FDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRSPLNAEQKMSTLESLLKYG 378 (419)
Q Consensus 299 ~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~ 378 (419)
+. ...+..+++|+.|++++|.+..+-. ..+ ..+++|+.|+++++. +++ .....++.+
T Consensus 338 ---------~~-~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~------~~l~~L~~L~L~~N~-l~~-----~~~~~~~~l 394 (455)
T 3v47_A 338 ---------ID-SRMFENLDKLEVLDLSYNHIRALGD-QSF------LGLPNLKELALDTNQ-LKS-----VPDGIFDRL 394 (455)
T ss_dssp ---------EC-GGGGTTCTTCCEEECCSSCCCEECT-TTT------TTCTTCCEEECCSSC-CSC-----CCTTTTTTC
T ss_pred ---------cC-hhHhcCcccCCEEECCCCcccccCh-hhc------cccccccEEECCCCc-ccc-----CCHhHhccC
Confidence 00 1234566778888877765431100 011 135888888888753 332 223345778
Q ss_pred cchhhHHHHhhhhcc
Q 014774 379 KNLKTMVIRILQMKS 393 (419)
Q Consensus 379 ~~L~~L~i~~~~~~~ 393 (419)
++|+.|.+..+.+..
T Consensus 395 ~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 395 TSLQKIWLHTNPWDC 409 (455)
T ss_dssp TTCCEEECCSSCBCC
T ss_pred CcccEEEccCCCccc
Confidence 889999888777753
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.19 E-value=1e-10 Score=113.46 Aligned_cols=239 Identities=15% Similarity=0.172 Sum_probs=133.5
Q ss_pred ccCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCccccccccccccccee
Q 014774 123 ISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKL 202 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L 202 (419)
+..+++|++|++.++.....+.+..+++|+.|+++++.+++... +..+++|++|++++|.......+. ....|
T Consensus 86 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~----~l~~L 158 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTISDISALS----GLTSL 158 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG---GTTCTTCSEEEEEEEEECCCGGGT----TCTTC
T ss_pred hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH---HcCCCCCCEEECCCCccCCChhhc----cCCcc
Confidence 55577788888777655444446677788888888777544221 567788888888776432221111 11233
Q ss_pred eEecccCc----eeeecCCCccEEEecCccceee---ccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHH
Q 014774 203 DFYGLGNC----SLSVSCPKIQFLEVQGCSWIRV---QETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDA 275 (419)
Q Consensus 203 ~~l~~~~~----~l~~~~~~L~~L~l~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 275 (419)
+.+.+.+. .-...+++|+.|+++++.+..+ ..+++|+.|.++++.-. ....++.+++|+.|++++... ..
T Consensus 159 ~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l--~~ 235 (466)
T 1o6v_A 159 QQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS-DITPLGILTNLDELSLNGNQL--KD 235 (466)
T ss_dssp SEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC-CCGGGGGCTTCCEEECCSSCC--CC
T ss_pred cEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccc-ccccccccCCCCEEECCCCCc--cc
Confidence 33332211 0123567888888888766333 33678888888764111 111245578899998844322 11
Q ss_pred HHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhH---hhhhccccccc----------
Q 014774 276 ISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFA---ALCQKNSLKNV---------- 342 (419)
Q Consensus 276 l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~l~~~~~l~~l---------- 342 (419)
+ ..+..+++|+.|++......+ + .. +..+++|+.|++++|.+. .+....+++.|
T Consensus 236 ~-~~l~~l~~L~~L~l~~n~l~~---~--------~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ 302 (466)
T 1o6v_A 236 I-GTLASLTNLTDLDLANNQISN---L--------AP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 302 (466)
T ss_dssp C-GGGGGCTTCSEEECCSSCCCC---C--------GG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC
T ss_pred c-hhhhcCCCCCEEECCCCcccc---c--------hh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCc
Confidence 1 135678889999886532222 0 11 345677777777765432 12111122222
Q ss_pred ccccccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhhhhc
Q 014774 343 ESGFVIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQMK 392 (419)
Q Consensus 343 ~~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~~ 392 (419)
..-..+++|+.|+++++. +++. . . +..+++|+.|.+..+.+.
T Consensus 303 ~~~~~l~~L~~L~L~~n~-l~~~---~---~-~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 303 SPISNLKNLTYLTLYFNN-ISDI---S---P-VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp GGGGGCTTCSEEECCSSC-CSCC---G---G-GGGCTTCCEEECCSSCCC
T ss_pred hhhcCCCCCCEEECcCCc-CCCc---h---h-hccCccCCEeECCCCccC
Confidence 112246778888887663 3321 1 1 456788888888765443
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.18 E-value=3.3e-11 Score=120.62 Aligned_cols=120 Identities=15% Similarity=0.066 Sum_probs=56.3
Q ss_pred ccCCCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccc
Q 014774 123 ISRAKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQC 200 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~ 200 (419)
++.+++|++|+|+++.....+ .+..+++|+.|+|++|.++.- ...++.++++|+.|++++|...+...-.+ ....
T Consensus 95 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~ 171 (597)
T 3oja_B 95 FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLERIEDDTF--QATT 171 (597)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCT
T ss_pred hcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCCEEEeeCCcCCCCChhhh--hcCC
Confidence 444666666666665433322 235566666666666654421 01123456666666666654322110000 0112
Q ss_pred eeeEecccCcee----eecCCCccEEEecCccceeeccCCcCceeEeec
Q 014774 201 KLDFYGLGNCSL----SVSCPKIQFLEVQGCSWIRVQETNCLRNLSISN 245 (419)
Q Consensus 201 ~L~~l~~~~~~l----~~~~~~L~~L~l~~~~~~~l~~~~~L~~L~l~~ 245 (419)
.|+.+.+.++.+ ....++|+.|+++++.+..++..+.|+.|++++
T Consensus 172 ~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~ 220 (597)
T 3oja_B 172 SLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 220 (597)
T ss_dssp TCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCS
T ss_pred cCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccC
Confidence 444444443321 123455555555555444444444555555544
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.17 E-value=1e-10 Score=113.41 Aligned_cols=270 Identities=14% Similarity=0.135 Sum_probs=132.5
Q ss_pred hCCCcceEEEec-CCCcchHHHHHHHhcCCceEEEEEecCccccccccCCCcccccccCCCCccEEEecCccccCCcccc
Q 014774 68 SIVCLEELVVYT-PFSKAGLDSWLMLAGSTLKHLELRMDNLADYQGCLENPSKLDCISRAKNLESLKLWGVLMVSSPKWD 146 (419)
Q Consensus 68 ~~~~L~~l~l~~-~~~~~~~~~w~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~~~~~ 146 (419)
...+|+.+.++. ...... . ....+.|++|++...... .+..++.+++|++|+++++.....+.+.
T Consensus 66 ~l~~L~~L~Ls~n~l~~~~--~--~~~l~~L~~L~l~~n~l~----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 131 (466)
T 1o6v_A 66 YLNNLTQINFSNNQLTDIT--P--LKNLTKLVDILMNNNQIA----------DITPLANLTNLTGLTLFNNQITDIDPLK 131 (466)
T ss_dssp GCTTCCEEECCSSCCCCCG--G--GTTCTTCCEEECCSSCCC----------CCGGGTTCTTCCEEECCSSCCCCCGGGT
T ss_pred hhcCCCEEECCCCccCCch--h--hhccccCCEEECCCCccc----------cChhhcCCCCCCEEECCCCCCCCChHHc
Confidence 356788888843 222211 1 112367777776533221 1222566888888888887655444567
Q ss_pred cCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEecccCcee-----eecCCCccE
Q 014774 147 VFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSL-----SVSCPKIQF 221 (419)
Q Consensus 147 ~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l-----~~~~~~L~~ 221 (419)
.+++|+.|+++++.+++.. .+..+++|+.|.+.+... .... ......|+.+++.++.+ ...+++|+.
T Consensus 132 ~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~~~~-~~~~----~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~ 203 (466)
T 1o6v_A 132 NLTNLNRLELSSNTISDIS---ALSGLTSLQQLSFGNQVT-DLKP----LANLTTLERLDISSNKVSDISVLAKLTNLES 203 (466)
T ss_dssp TCTTCSEEEEEEEEECCCG---GGTTCTTCSEEEEEESCC-CCGG----GTTCTTCCEEECCSSCCCCCGGGGGCTTCSE
T ss_pred CCCCCCEEECCCCccCCCh---hhccCCcccEeecCCccc-Cchh----hccCCCCCEEECcCCcCCCChhhccCCCCCE
Confidence 7888888888888755421 134566666666542110 0000 01112333333333321 122344455
Q ss_pred EEecCcc----------------------ceee---ccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHHH
Q 014774 222 LEVQGCS----------------------WIRV---QETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDAI 276 (419)
Q Consensus 222 L~l~~~~----------------------~~~l---~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l 276 (419)
|+++++. +..+ ..+++|+.|+++++.-. ....+..+++|+.|++++... ..+
T Consensus 204 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l--~~~ 280 (466)
T 1o6v_A 204 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS-NLAPLSGLTKLTELKLGANQI--SNI 280 (466)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSCC--CCC
T ss_pred EEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccc-cchhhhcCCCCCEEECCCCcc--Ccc
Confidence 5544443 3211 12344444444442100 001133345555555522111 001
Q ss_pred HHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceee
Q 014774 277 SKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVV 356 (419)
Q Consensus 277 ~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l 356 (419)
.. +..+++|+.|++......+ ... +..+++|+.|++++|.+... ..-..+++|+.|++
T Consensus 281 ~~-~~~l~~L~~L~L~~n~l~~-----------~~~-~~~l~~L~~L~L~~n~l~~~---------~~~~~l~~L~~L~l 338 (466)
T 1o6v_A 281 SP-LAGLTALTNLELNENQLED-----------ISP-ISNLKNLTYLTLYFNNISDI---------SPVSSLTKLQRLFF 338 (466)
T ss_dssp GG-GTTCTTCSEEECCSSCCSC-----------CGG-GGGCTTCSEEECCSSCCSCC---------GGGGGCTTCCEEEC
T ss_pred cc-ccCCCccCeEEcCCCcccC-----------chh-hcCCCCCCEEECcCCcCCCc---------hhhccCccCCEeEC
Confidence 11 3345555555554311111 011 34567777777776643211 11124689999999
Q ss_pred eccCCCCchhhhhhHHhhhhcccchhhHHHHhhhhc
Q 014774 357 TVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQMK 392 (419)
Q Consensus 357 ~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~~ 392 (419)
+++. +++ +. -+..+++|+.|.+..+.+.
T Consensus 339 ~~n~-l~~------~~-~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 339 YNNK-VSD------VS-SLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp CSSC-CCC------CG-GGTTCTTCCEEECCSSCCC
T ss_pred CCCc-cCC------ch-hhccCCCCCEEeCCCCccC
Confidence 8874 443 12 3567899999999866553
No 16
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.14 E-value=6e-11 Score=115.40 Aligned_cols=243 Identities=15% Similarity=0.114 Sum_probs=121.8
Q ss_pred cccCCCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCccccccccccccc
Q 014774 122 CISRAKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQ 199 (419)
Q Consensus 122 ~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~ 199 (419)
.+..+++|++|+|.++.....+ .+..+++|+.|+|+++.++... ...+..+++|++|++.++.......-.+ ...
T Consensus 75 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l 151 (477)
T 2id5_A 75 AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL-DYMFQDLYNLKSLEVGDNDLVYISHRAF--SGL 151 (477)
T ss_dssp TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEEECCTTCCEECTTSS--TTC
T ss_pred hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCC-hhHccccccCCEEECCCCccceeChhhc--cCC
Confidence 3455778888888776544333 2466778888888877643211 1123567788888887764322110000 012
Q ss_pred ceeeEecccCcee-------eecCCCccEEEecCccceee-----ccCCcCceeEeecccce-EEEeccCCCCCcCEeee
Q 014774 200 CKLDFYGLGNCSL-------SVSCPKIQFLEVQGCSWIRV-----QETNCLRNLSISNNAGR-VYMVDFGKLAALESLTL 266 (419)
Q Consensus 200 ~~L~~l~~~~~~l-------~~~~~~L~~L~l~~~~~~~l-----~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l 266 (419)
.+|+.+.+.++.+ ...+++|+.|++.++.+..+ ..+++|+.|+++++... ..........+|++|++
T Consensus 152 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp TTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred CCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 3455555544421 12457788888877765332 23667777777764211 11111222447888887
Q ss_pred CCCCchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhccccccccccc
Q 014774 267 RGVQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGF 346 (419)
Q Consensus 267 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~ 346 (419)
++.... ......+..+++|+.|+++........ ...+..+++|+.|+++++.+..+-. ..+ .
T Consensus 232 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~----------~~~~~~l~~L~~L~L~~n~l~~~~~-~~~------~ 293 (477)
T 2id5_A 232 THCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIE----------GSMLHELLRLQEIQLVGGQLAVVEP-YAF------R 293 (477)
T ss_dssp ESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEEC----------TTSCTTCTTCCEEECCSSCCSEECT-TTB------T
T ss_pred cCCccc-ccCHHHhcCccccCeeECCCCcCCccC----------hhhccccccCCEEECCCCccceECH-HHh------c
Confidence 332210 011123566788888888542121100 1113455677777777654321100 001 1
Q ss_pred ccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhhhh
Q 014774 347 VIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQM 391 (419)
Q Consensus 347 ~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~ 391 (419)
.+++|+.|+++++. ++. .....+..+++|+.|.+..+.+
T Consensus 294 ~l~~L~~L~L~~N~-l~~-----~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 294 GLNYLRVLNVSGNQ-LTT-----LEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp TCTTCCEEECCSSC-CSC-----CCGGGBSCGGGCCEEECCSSCE
T ss_pred CcccCCEEECCCCc-Cce-----eCHhHcCCCcccCEEEccCCCc
Confidence 24566666665542 221 1122344556666666655444
No 17
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.14 E-value=4.2e-11 Score=123.39 Aligned_cols=241 Identities=15% Similarity=0.091 Sum_probs=126.7
Q ss_pred CCCccEEEecCcccc-CCc-ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceee
Q 014774 126 AKNLESLKLWGVLMV-SSP-KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLD 203 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~-~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~ 203 (419)
|++|++|++.++... ..+ .+..+++|+.|++++|.++...-...+..+++|++|++++|...+... .........|+
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~~L~ 371 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP-ESLTNLSASLL 371 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC-TTHHHHTTTCS
T ss_pred cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc-HHHHhhhcCCc
Confidence 577777777766543 222 356677777777777765422112234567777777777764322110 00000011455
Q ss_pred EecccCceeee---------cCCCccEEEecCccce-e----eccCCcCceeEeecccce-EEEeccCCCCCcCEeeeCC
Q 014774 204 FYGLGNCSLSV---------SCPKIQFLEVQGCSWI-R----VQETNCLRNLSISNNAGR-VYMVDFGKLAALESLTLRG 268 (419)
Q Consensus 204 ~l~~~~~~l~~---------~~~~L~~L~l~~~~~~-~----l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~ 268 (419)
.+.+.++.+.. ..++|+.|++.+|.+. . +..+++|+.|+++++.-. .....++.+++|+.|++.+
T Consensus 372 ~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~ 451 (768)
T 3rgz_A 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451 (768)
T ss_dssp EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCS
T ss_pred EEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCC
Confidence 55555554211 1456777777777653 2 223667777777764110 1112345567777777733
Q ss_pred CCchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhccccccccccccc
Q 014774 269 VQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVI 348 (419)
Q Consensus 269 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~ 348 (419)
.... ..+...+..+++|+.|++....... . ....+..+++|+.|++++|.+...-. ..+ ..+
T Consensus 452 n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~-~---------~p~~l~~l~~L~~L~L~~N~l~~~~p-~~~------~~l 513 (768)
T 3rgz_A 452 NMLE-GEIPQELMYVKTLETLILDFNDLTG-E---------IPSGLSNCTNLNWISLSNNRLTGEIP-KWI------GRL 513 (768)
T ss_dssp SCCC-SCCCGGGGGCTTCCEEECCSSCCCS-C---------CCGGGGGCTTCCEEECCSSCCCSCCC-GGG------GGC
T ss_pred Cccc-CcCCHHHcCCCCceEEEecCCcccC-c---------CCHHHhcCCCCCEEEccCCccCCcCC-hHH------hcC
Confidence 2210 1122234567777777775422221 0 11234567788888887765431100 001 124
Q ss_pred ccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhhhh
Q 014774 349 PCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQM 391 (419)
Q Consensus 349 p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~ 391 (419)
++|+.|+++++.- ++ .++..+..+++|+.|.+..+.+
T Consensus 514 ~~L~~L~L~~N~l-~~-----~~p~~l~~l~~L~~L~Ls~N~l 550 (768)
T 3rgz_A 514 ENLAILKLSNNSF-SG-----NIPAELGDCRSLIWLDLNTNLF 550 (768)
T ss_dssp TTCCEEECCSSCC-EE-----ECCGGGGGCTTCCEEECCSSEE
T ss_pred CCCCEEECCCCcc-cC-----cCCHHHcCCCCCCEEECCCCcc
Confidence 7788888876642 21 2333456678888887765544
No 18
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.13 E-value=2.4e-11 Score=114.83 Aligned_cols=243 Identities=13% Similarity=0.108 Sum_probs=124.7
Q ss_pred cccCCCCccEEEecCccccCCc------ccccCCCccEEEecCeeeC---h---HHHH---HHHhcCCCCcEEEccCCCC
Q 014774 122 CISRAKNLESLKLWGVLMVSSP------KWDVFHKLQNLEIVGARLE---D---PALS---TALRACPNLTNLLLLGCEG 186 (419)
Q Consensus 122 ~l~~~~~L~~L~L~~~~~~~~~------~~~~~~~L~~L~L~~~~~~---~---~~l~---~l~~~~p~L~~L~l~~c~~ 186 (419)
.+..+++|++|+|+++...... .+..+++|+.|+|++|.++ + .++. ..+..+++|++|+++++..
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 3445889999999987543321 1357899999999987532 2 2332 3346899999999998754
Q ss_pred cccccccccccccceeeEecccCceeeecCCCccEEEecCccce-----eecc----C---------CcCceeEeeccc-
Q 014774 187 VRSVSIELPHLEQCKLDFYGLGNCSLSVSCPKIQFLEVQGCSWI-----RVQE----T---------NCLRNLSISNNA- 247 (419)
Q Consensus 187 ~~~~~~~~~~l~~~~L~~l~~~~~~l~~~~~~L~~L~l~~~~~~-----~l~~----~---------~~L~~L~l~~~~- 247 (419)
. ..++..+. .....+++|+.|++++|.+. .++. . ++|+.|.++++.
T Consensus 107 ~-~~~~~~l~--------------~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 107 G-PTAQEPLI--------------DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp C-TTTHHHHH--------------HHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred C-HHHHHHHH--------------HHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 3 32222110 00123455555555555431 1111 1 556666655431
Q ss_pred --ceEEE--eccCCCCCcCEeeeCCCCchHHHH---HH-HhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCC
Q 014774 248 --GRVYM--VDFGKLAALESLTLRGVQWCWDAI---SK-MLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPK 319 (419)
Q Consensus 248 --~~~~~--~~~~~~~~L~~L~l~~~~~~~~~l---~~-l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 319 (419)
+.... ..+..+++|++|++++......++ .. .+..+++|+.|+++....++ .+. ..+...+..+++
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~-~g~-----~~l~~~l~~~~~ 245 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH-LGS-----SALAIALKSWPN 245 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH-HHH-----HHHHHHGGGCTT
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc-HHH-----HHHHHHHccCCC
Confidence 00000 012245677777774322211232 22 34466777777775422221 000 012233456677
Q ss_pred eeEEEecCchhHh-----hhhcccccccccccccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhhhhc
Q 014774 320 LQKFDIHGAMFAA-----LCQKNSLKNVESGFVIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQMK 392 (419)
Q Consensus 320 L~~L~l~~~~~~~-----l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~~ 392 (419)
|++|++++|.+.. +.. .++ ...+++|+.|+++++. +++.+.......+..++|+|+.|.+..+.+.
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~--~l~----~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVD--AFS----KLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHH--HHH----TCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred cCEEECCCCCCchhhHHHHHH--HHh----hccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 7777777665421 111 000 0114677777777653 5544433344444455677777777666543
No 19
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.12 E-value=3.2e-11 Score=111.32 Aligned_cols=227 Identities=16% Similarity=0.178 Sum_probs=120.1
Q ss_pred CCceEEEEEecCccccccccCCCcccccccCCCCccEEEecCccccCCc-ccccCCCccEEEecCeeeChHHHHHHHhcC
Q 014774 95 STLKHLELRMDNLADYQGCLENPSKLDCISRAKNLESLKLWGVLMVSSP-KWDVFHKLQNLEIVGARLEDPALSTALRAC 173 (419)
Q Consensus 95 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~ 173 (419)
.+++.|++....... -...++.+++|++|+|.++.....+ .+..+++|+.|+|+++.++ .+...+..+
T Consensus 81 ~~l~~L~L~~n~l~~---------lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l 149 (328)
T 4fcg_A 81 PGRVALELRSVPLPQ---------FPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASL 149 (328)
T ss_dssp TTCCEEEEESSCCSS---------CCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGC
T ss_pred cceeEEEccCCCchh---------cChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcC
Confidence 678888877543221 1123555789999999887655444 4578889999999988865 233346778
Q ss_pred CCCcEEEccCCCCcccccccccccccceeeEecccCceeeecCCCccEEEecCccceeeccCCcCceeEeecccceEEEe
Q 014774 174 PNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSLSVSCPKIQFLEVQGCSWIRVQETNCLRNLSISNNAGRVYMV 253 (419)
Q Consensus 174 p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l~~~~~~L~~L~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 253 (419)
++|++|++++|...+..... +....+. .....+++|+.|+++++.+..++.
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~--------~~~~~~~--~~~~~l~~L~~L~L~~n~l~~lp~------------------- 200 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEP--------LASTDAS--GEHQGLVNLQSLRLEWTGIRSLPA------------------- 200 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSC--------SEEEC-C--CCEEESTTCCEEEEEEECCCCCCG-------------------
T ss_pred cCCCEEECCCCCCccccChh--------Hhhccch--hhhccCCCCCEEECcCCCcCcchH-------------------
Confidence 89999999887655432111 0011111 111346778888887765532221
Q ss_pred ccCCCCCcCEeeeCCCCchHHHHHHHhccCCcccEEEeee-eecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHh
Q 014774 254 DFGKLAALESLTLRGVQWCWDAISKMLYWASEVKHLYMKV-EFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAA 332 (419)
Q Consensus 254 ~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 332 (419)
.++.+++|++|++++... ..+...+..+++|+.|+++. ...+. +...+..+++|+.|++++|....
T Consensus 201 ~l~~l~~L~~L~L~~N~l--~~l~~~l~~l~~L~~L~Ls~n~~~~~-----------~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 201 SIANLQNLKSLKIRNSPL--SALGPAIHHLPKLEELDLRGCTALRN-----------YPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp GGGGCTTCCEEEEESSCC--CCCCGGGGGCTTCCEEECTTCTTCCB-----------CCCCTTCCCCCCEEECTTCTTCC
T ss_pred hhcCCCCCCEEEccCCCC--CcCchhhccCCCCCEEECcCCcchhh-----------hHHHhcCCCCCCEEECCCCCchh
Confidence 123355555555532111 11111244566666666643 11111 01113455667777776654321
Q ss_pred hhhcccccccccccccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHH
Q 014774 333 LCQKNSLKNVESGFVIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIR 387 (419)
Q Consensus 333 l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~ 387 (419)
.-. ..+ ..+++|+.|++++|..... ++..+..+++|+.+.+.
T Consensus 268 ~~p-~~~------~~l~~L~~L~L~~n~~~~~------iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 268 TLP-LDI------HRLTQLEKLDLRGCVNLSR------LPSLIAQLPANCIILVP 309 (328)
T ss_dssp BCC-TTG------GGCTTCCEEECTTCTTCCC------CCGGGGGSCTTCEEECC
T ss_pred hcc-hhh------hcCCCCCEEeCCCCCchhh------ccHHHhhccCceEEeCC
Confidence 000 001 1246677777766554331 23334556666666554
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.10 E-value=2.4e-10 Score=105.40 Aligned_cols=129 Identities=17% Similarity=0.159 Sum_probs=80.9
Q ss_pred CCCcceEEEec-CCCcchHHHHHHHhcCCceEEEEEecCccccccccCCCcccccccCCCCccEEEecCccccCCc-ccc
Q 014774 69 IVCLEELVVYT-PFSKAGLDSWLMLAGSTLKHLELRMDNLADYQGCLENPSKLDCISRAKNLESLKLWGVLMVSSP-KWD 146 (419)
Q Consensus 69 ~~~L~~l~l~~-~~~~~~~~~w~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~~-~~~ 146 (419)
..+++.+++.. .... ++..+. ..+.|++|+++..... .....++.+++|++|+|+++.....+ .+.
T Consensus 80 ~~~l~~L~L~~n~l~~--lp~~l~-~l~~L~~L~L~~n~l~---------~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~ 147 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQ--FPDQAF-RLSHLQHMTIDAAGLM---------ELPDTMQQFAGLETLTLARNPLRALPASIA 147 (328)
T ss_dssp STTCCEEEEESSCCSS--CCSCGG-GGTTCSEEEEESSCCC---------CCCSCGGGGTTCSEEEEESCCCCCCCGGGG
T ss_pred ccceeEEEccCCCchh--cChhhh-hCCCCCEEECCCCCcc---------chhHHHhccCCCCEEECCCCccccCcHHHh
Confidence 47899999954 3321 111111 2478999998854322 11134566899999999988655555 568
Q ss_pred cCCCccEEEecCeeeChHHHHHH--------HhcCCCCcEEEccCCCCcccccccccccccceeeEecccCceeeecCCC
Q 014774 147 VFHKLQNLEIVGARLEDPALSTA--------LRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSLSVSCPK 218 (419)
Q Consensus 147 ~~~~L~~L~L~~~~~~~~~l~~l--------~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l~~~~~~ 218 (419)
.+++|+.|++++|......-..+ +.++++|++|++++|... .. + .....+++
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~l----p---------------~~l~~l~~ 207 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SL----P---------------ASIANLQN 207 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CC----C---------------GGGGGCTT
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cc----h---------------HhhcCCCC
Confidence 89999999999986221100001 234889999999877432 11 0 00134678
Q ss_pred ccEEEecCccc
Q 014774 219 IQFLEVQGCSW 229 (419)
Q Consensus 219 L~~L~l~~~~~ 229 (419)
|+.|++++|.+
T Consensus 208 L~~L~L~~N~l 218 (328)
T 4fcg_A 208 LKSLKIRNSPL 218 (328)
T ss_dssp CCEEEEESSCC
T ss_pred CCEEEccCCCC
Confidence 89999988765
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.10 E-value=5e-11 Score=115.99 Aligned_cols=244 Identities=14% Similarity=0.117 Sum_probs=147.8
Q ss_pred cccCCCCccEEEecCccccCC--cccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCccccccccccccc
Q 014774 122 CISRAKNLESLKLWGVLMVSS--PKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQ 199 (419)
Q Consensus 122 ~l~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~ 199 (419)
.+..+++|++|+|.++..... ..+..+++|+.|+|+++.++... ...+.++++|++|+++++.......-.+ ...
T Consensus 51 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l 127 (477)
T 2id5_A 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP-LGVFTGLSNLTKLDISENKIVILLDYMF--QDL 127 (477)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-TTSSTTCTTCCEEECTTSCCCEECTTTT--TTC
T ss_pred HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC-cccccCCCCCCEEECCCCccccCChhHc--ccc
Confidence 456689999999988754332 24678899999999998855321 1234678999999999886433211111 122
Q ss_pred ceeeEecccCcee-------eecCCCccEEEecCcccee-----eccCCcCceeEeecccceE-EEeccCCCCCcCEeee
Q 014774 200 CKLDFYGLGNCSL-------SVSCPKIQFLEVQGCSWIR-----VQETNCLRNLSISNNAGRV-YMVDFGKLAALESLTL 266 (419)
Q Consensus 200 ~~L~~l~~~~~~l-------~~~~~~L~~L~l~~~~~~~-----l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~L~~L~l 266 (419)
.+|+.+.+.++.+ ...+++|+.|+++++.+.. +..+++|+.|.++++.-.. ....+..+++|+.|++
T Consensus 128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence 3555555544321 1346788899988886633 3347788888887742111 1113456788888888
Q ss_pred CCCCchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhccccccccccc
Q 014774 267 RGVQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGF 346 (419)
Q Consensus 267 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~ 346 (419)
++.... ..+.......++|++|++....... +. ...+..+++|+.|+++++.+..+-. ..+ .
T Consensus 208 ~~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~---------~~-~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~------~ 269 (477)
T 2id5_A 208 SHWPYL-DTMTPNCLYGLNLTSLSITHCNLTA---------VP-YLAVRHLVYLRFLNLSYNPISTIEG-SML------H 269 (477)
T ss_dssp ECCTTC-CEECTTTTTTCCCSEEEEESSCCCS---------CC-HHHHTTCTTCCEEECCSSCCCEECT-TSC------T
T ss_pred CCCccc-cccCcccccCccccEEECcCCcccc---------cC-HHHhcCccccCeeECCCCcCCccCh-hhc------c
Confidence 542210 0111112234588888886532222 11 2345678999999999876532200 011 1
Q ss_pred ccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhhhhc
Q 014774 347 VIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQMK 392 (419)
Q Consensus 347 ~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~~ 392 (419)
.+++|+.|+++++. +++ .....+..+++|+.|.+..+.+.
T Consensus 270 ~l~~L~~L~L~~n~-l~~-----~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 270 ELLRLQEIQLVGGQ-LAV-----VEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp TCTTCCEEECCSSC-CSE-----ECTTTBTTCTTCCEEECCSSCCS
T ss_pred ccccCCEEECCCCc-cce-----ECHHHhcCcccCCEEECCCCcCc
Confidence 35899999998753 332 22334677899999999876554
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.09 E-value=8e-11 Score=118.09 Aligned_cols=169 Identities=15% Similarity=0.119 Sum_probs=99.6
Q ss_pred cccCCCCccEEEecCccccCCc-ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccc
Q 014774 122 CISRAKNLESLKLWGVLMVSSP-KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQC 200 (419)
Q Consensus 122 ~l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~ 200 (419)
.+..+++|++|++.++.....+ .+..+++|+.|+++++.++... ...+..+++|++|++++|.......... .....
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~ 350 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGC-LENLE 350 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSST-TTTCT
T ss_pred HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhh-hhccC
Confidence 3555789999999887655544 4577889999999988865421 1234678899999998886443221111 01223
Q ss_pred eeeEecccCcee---------eecCCCccEEEecCccceee-----ccCCcCceeEeecccce--EEEeccCCCCCcCEe
Q 014774 201 KLDFYGLGNCSL---------SVSCPKIQFLEVQGCSWIRV-----QETNCLRNLSISNNAGR--VYMVDFGKLAALESL 264 (419)
Q Consensus 201 ~L~~l~~~~~~l---------~~~~~~L~~L~l~~~~~~~l-----~~~~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L 264 (419)
+|+.+++.++.+ ...+++|+.|+++++.+..+ ..+++|+.|+++++.-. .....+..+++|+.|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 555565554431 12457888888888765332 23677888887764111 001124457778888
Q ss_pred eeCCCCchHHHHHHHhccCCcccEEEeee
Q 014774 265 TLRGVQWCWDAISKMLYWASEVKHLYMKV 293 (419)
Q Consensus 265 ~l~~~~~~~~~l~~l~~~~~~L~~L~l~~ 293 (419)
++++.... ......+..+++|++|+++.
T Consensus 431 ~l~~n~l~-~~~~~~~~~l~~L~~L~L~~ 458 (606)
T 3t6q_A 431 NLSHSLLD-ISSEQLFDGLPALQHLNLQG 458 (606)
T ss_dssp ECTTCCCB-TTCTTTTTTCTTCCEEECTT
T ss_pred ECCCCccC-CcCHHHHhCCCCCCEEECCC
Confidence 88432210 11122345677788887754
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.09 E-value=1.5e-10 Score=116.01 Aligned_cols=247 Identities=16% Similarity=0.153 Sum_probs=125.4
Q ss_pred ccCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCccccccccccccccee
Q 014774 123 ISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKL 202 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L 202 (419)
+..+++|+.|++.++.....+.+..+++|+.|++++|.++. +..+ .+++|++|++.++.......+ ....+|
T Consensus 281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~--lp~~--~l~~L~~L~l~~n~~~~~~~~----~~l~~L 352 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ--FPTL--DLPFLKSLTLTMNKGSISFKK----VALPSL 352 (606)
T ss_dssp CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSS--CCCC--CCSSCCEEEEESCSSCEECCC----CCCTTC
T ss_pred cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcc--cccC--CCCccceeeccCCcCccchhh----ccCCCC
Confidence 44477888888887766555556677888888888887532 2222 778888888887754433211 123355
Q ss_pred eEecccCceee---------ecCCCccEEEecCccceeec----cCCcCceeEeeccc--ceEEEeccCCCCCcCEeeeC
Q 014774 203 DFYGLGNCSLS---------VSCPKIQFLEVQGCSWIRVQ----ETNCLRNLSISNNA--GRVYMVDFGKLAALESLTLR 267 (419)
Q Consensus 203 ~~l~~~~~~l~---------~~~~~L~~L~l~~~~~~~l~----~~~~L~~L~l~~~~--~~~~~~~~~~~~~L~~L~l~ 267 (419)
+.+.++++.+. ..+++|+.|+++++.+..++ .+++|+.|.++++. +......+..+++|+.|+++
T Consensus 353 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 432 (606)
T 3vq2_A 353 SYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432 (606)
T ss_dssp CEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECT
T ss_pred CEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECc
Confidence 55555544321 23567777777776653332 35667777666531 00000123346667777663
Q ss_pred CCCchHHHHHHHhccCCcccEEEeee-eecCC-C-CCCcCCCC---cC---------HHHHhhcCCCeeEEEecCchhHh
Q 014774 268 GVQWCWDAISKMLYWASEVKHLYMKV-EFTGD-F-DTLQPFPE---VD---------FVEFFNNHPKLQKFDIHGAMFAA 332 (419)
Q Consensus 268 ~~~~~~~~l~~l~~~~~~L~~L~l~~-~~~~~-~-~~l~~~~~---~~---------~~~~~~~~~~L~~L~l~~~~~~~ 332 (419)
+.... ......+..+++|++|++.. ...+. . ..+..++. .+ ....+..+++|+.|++++|.+..
T Consensus 433 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 511 (606)
T 3vq2_A 433 YTNTK-IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF 511 (606)
T ss_dssp TSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCC-ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC
Confidence 32210 01112244566666666643 11110 0 00000000 00 01112344555555555443321
Q ss_pred hhhcccccccccccccccccceeeeccCCCCchhhhhhHHhhhhccc-chhhHHHHhhhhc
Q 014774 333 LCQKNSLKNVESGFVIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGK-NLKTMVIRILQMK 392 (419)
Q Consensus 333 l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~-~L~~L~i~~~~~~ 392 (419)
.-. ..-..+++|+.|+++++. ++. ++.-+...| +|+.|.+..+.+.
T Consensus 512 ~~~-------~~~~~l~~L~~L~l~~N~-l~~------~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 512 LDS-------SHYNQLYSLSTLDCSFNR-IET------SKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp EEG-------GGTTTCTTCCEEECTTSC-CCC------EESCGGGSCTTCCEEECCSCCCC
T ss_pred cCH-------HHccCCCcCCEEECCCCc-Ccc------cCHhHhhhcccCcEEEccCCCcc
Confidence 100 001135788888888764 332 222245565 5888888877765
No 24
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.08 E-value=4.2e-11 Score=120.13 Aligned_cols=217 Identities=17% Similarity=0.036 Sum_probs=118.7
Q ss_pred CCCccEEEecCccccCCcccccCCCccEEEecCeeeChHH-HHHHHhcCCCCcEEEccCCCCcccccccccccccceeeE
Q 014774 126 AKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPA-LSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDF 204 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~ 204 (419)
+++|++|++.++.......+..+++|+.|+++++.++... .......+++|++|++++|...... .......+|+.
T Consensus 327 l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~---~~~~~l~~L~~ 403 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS---ANFMGLEELQH 403 (606)
T ss_dssp CSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC---CCCTTCTTCCE
T ss_pred CCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch---hhccCCCCCCe
Confidence 4445555554442222223345666777777666543211 1223456777777777766532211 10112235666
Q ss_pred ecccCceee--------ecCCCccEEEecCcccee-----eccCCcCceeEeecc--cceEEEeccCCCCCcCEeeeCCC
Q 014774 205 YGLGNCSLS--------VSCPKIQFLEVQGCSWIR-----VQETNCLRNLSISNN--AGRVYMVDFGKLAALESLTLRGV 269 (419)
Q Consensus 205 l~~~~~~l~--------~~~~~L~~L~l~~~~~~~-----l~~~~~L~~L~l~~~--~~~~~~~~~~~~~~L~~L~l~~~ 269 (419)
+.+.++.+. ..+++|+.|++++|.+.. +..+++|+.|+++++ .+......++.+++|+.|++++.
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence 666555421 235678888888876633 233677888888765 12122234566788888888443
Q ss_pred CchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccc
Q 014774 270 QWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIP 349 (419)
Q Consensus 270 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p 349 (419)
... ......+..+++|++|+++.....+ . ....+..+++|+.|++++|.+..+-. .+. .+|
T Consensus 484 ~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~---------~-~~~~~~~l~~L~~L~l~~N~l~~~p~--~~~------~l~ 544 (606)
T 3vq2_A 484 QLE-QISWGVFDTLHRLQLLNMSHNNLLF---------L-DSSHYNQLYSLSTLDCSFNRIETSKG--ILQ------HFP 544 (606)
T ss_dssp CCC-EECTTTTTTCTTCCEEECCSSCCSC---------E-EGGGTTTCTTCCEEECTTSCCCCEES--CGG------GSC
T ss_pred cCC-ccChhhhcccccCCEEECCCCcCCC---------c-CHHHccCCCcCCEEECCCCcCcccCH--hHh------hhc
Confidence 220 1112235667888888886532222 0 12335678999999999886542200 011 134
Q ss_pred -cccceeeeccCCCCc
Q 014774 350 -CLEEVVVTVRSPLNA 364 (419)
Q Consensus 350 -~L~~l~l~~~~~~~~ 364 (419)
+|+.++++++.-..+
T Consensus 545 ~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 545 KSLAFFNLTNNSVACI 560 (606)
T ss_dssp TTCCEEECCSCCCCCS
T ss_pred ccCcEEEccCCCcccC
Confidence 699999988765443
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.08 E-value=2.1e-10 Score=114.73 Aligned_cols=110 Identities=18% Similarity=0.140 Sum_probs=63.4
Q ss_pred HHhCCCcceEEEec-CCCcchHHHHHHHhcCCceEEEEEecCccccccccCCCcccccccCCCCccEEEecCccccCCc-
Q 014774 66 IYSIVCLEELVVYT-PFSKAGLDSWLMLAGSTLKHLELRMDNLADYQGCLENPSKLDCISRAKNLESLKLWGVLMVSSP- 143 (419)
Q Consensus 66 l~~~~~L~~l~l~~-~~~~~~~~~w~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~~- 143 (419)
+....+|+.|.++. .........+ ...+.|+.|+++..... ......++.+++|++|+|.++.....+
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 140 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAF--AYAHTIQKLYMGFNAIR--------YLPPHVFQNVPLLTVLVLERNDLSSLPR 140 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred HccCCCCcEEECCCCCCCCCChHHh--cCCCCCCEEECCCCcCC--------CCCHHHHcCCCCCCEEEeeCCCCCCCCH
Confidence 33456677777733 2211100000 02256777766533321 111123455888999999887655444
Q ss_pred -ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCC
Q 014774 144 -KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEG 186 (419)
Q Consensus 144 -~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~ 186 (419)
.+..+++|+.|+|++|.++... ...+..+++|+.|+++++..
T Consensus 141 ~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 141 GIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECTTSCC
T ss_pred HHhccCCCCCEEEeeCCcCCCCC-hhhhhcCCcCcEEECcCCCC
Confidence 2467888999999888754321 12246788899999888754
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.08 E-value=2.4e-10 Score=114.66 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=14.7
Q ss_pred hhhhcccchhhHHHHhhhhc
Q 014774 373 SLLKYGKNLKTMVIRILQMK 392 (419)
Q Consensus 373 ~ll~~~~~L~~L~i~~~~~~ 392 (419)
..+..+++|+.|.+..+++.
T Consensus 541 ~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 541 SLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp GGHHHHHTSSEEECTTCCEE
T ss_pred hhcccCCCCCEEeCCCCCcc
Confidence 34566788888888887775
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.07 E-value=3.6e-10 Score=106.89 Aligned_cols=280 Identities=15% Similarity=0.091 Sum_probs=152.5
Q ss_pred HHhCCCcceEEEec-CCCcchHHHHHHHhcCCceEEEEEecCccccccccCCCcccccccCCCCccEEEecCccccCCcc
Q 014774 66 IYSIVCLEELVVYT-PFSKAGLDSWLMLAGSTLKHLELRMDNLADYQGCLENPSKLDCISRAKNLESLKLWGVLMVSSPK 144 (419)
Q Consensus 66 l~~~~~L~~l~l~~-~~~~~~~~~w~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~~~ 144 (419)
+...++|+.+.+.. .......... ...+.|+.|++...... ......++.+++|++|++.++.....+.
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~l~~ 134 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAF--AYAHTIQKLYMGFNAIR--------YLPPHVFQNVPLLTVLVLERNDLSSLPR 134 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTT--TTCTTCCEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred hcccccCcEEECCCCcccccChhhc--cCCCCcCEEECCCCCCC--------cCCHHHhcCCCCCCEEECCCCccCcCCH
Confidence 34456777777732 2211100000 12256777766533221 1112335568899999999886555442
Q ss_pred --cccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEecccCcee--eecCCCcc
Q 014774 145 --WDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSL--SVSCPKIQ 220 (419)
Q Consensus 145 --~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l--~~~~~~L~ 220 (419)
+..+++|+.|+++++.++... ...+..+++|++|+++++..... .+.. ...|+.+.+..+.+ ....+.|+
T Consensus 135 ~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~-~~~~----l~~L~~L~l~~n~l~~~~~~~~L~ 208 (390)
T 3o6n_A 135 GIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNRLTHV-DLSL----IPSLFHANVSYNLLSTLAIPIAVE 208 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCEEECCSSCCSBC-CGGG----CTTCSEEECCSSCCSEEECCSSCS
T ss_pred HHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCEEECCCCcCCcc-cccc----ccccceeecccccccccCCCCcce
Confidence 477899999999999855321 12246789999999998754322 1111 12455555544431 13446788
Q ss_pred EEEecCccceeecc--CCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHHHHHHhccCCcccEEEeeeeecCC
Q 014774 221 FLEVQGCSWIRVQE--TNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDAISKMLYWASEVKHLYMKVEFTGD 298 (419)
Q Consensus 221 ~L~l~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~ 298 (419)
.|+++++.+..++. .++|+.|.++++.-. ....+..+++|++|++++.... ......+..+++|++|+++......
T Consensus 209 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (390)
T 3o6n_A 209 ELDASHNSINVVRGPVNVELTILKLQHNNLT-DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVA 286 (390)
T ss_dssp EEECCSSCCCEEECCCCSSCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCC-EEESGGGTTCSSCCEEECCSSCCCE
T ss_pred EEECCCCeeeeccccccccccEEECCCCCCc-ccHHHcCCCCccEEECCCCcCC-CcChhHccccccCCEEECCCCcCcc
Confidence 88888877644433 567888877764111 1123455778888888442210 0112235567888888885421211
Q ss_pred CCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeeccCCCCchhhhhhHHhhhhcc
Q 014774 299 FDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRSPLNAEQKMSTLESLLKYG 378 (419)
Q Consensus 299 ~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~ 378 (419)
+......+|+|+.|++++|.+..+-. .+ ..+++|+.|+++++. +++ . . +..+
T Consensus 287 -----------~~~~~~~l~~L~~L~L~~n~l~~~~~--~~------~~l~~L~~L~L~~N~-i~~---~---~--~~~~ 338 (390)
T 3o6n_A 287 -----------LNLYGQPIPTLKVLDLSHNHLLHVER--NQ------PQFDRLENLYLDHNS-IVT---L---K--LSTH 338 (390)
T ss_dssp -----------EECSSSCCTTCCEEECCSSCCCCCGG--GH------HHHTTCSEEECCSSC-CCC---C---C--CCTT
T ss_pred -----------cCcccCCCCCCCEEECCCCcceecCc--cc------cccCcCCEEECCCCc-cce---e---C--chhh
Confidence 00112346778888877765431100 00 123667777766543 222 1 1 3455
Q ss_pred cchhhHHHHhhhh
Q 014774 379 KNLKTMVIRILQM 391 (419)
Q Consensus 379 ~~L~~L~i~~~~~ 391 (419)
++|+.|.+..+.+
T Consensus 339 ~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 339 HTLKNLTLSHNDW 351 (390)
T ss_dssp CCCSEEECCSSCE
T ss_pred ccCCEEEcCCCCc
Confidence 6677666665544
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.07 E-value=2.5e-10 Score=110.20 Aligned_cols=240 Identities=14% Similarity=0.087 Sum_probs=117.4
Q ss_pred ccCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCccccccccccccccee
Q 014774 123 ISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKL 202 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L 202 (419)
++.+++|++|+++++..... .+..+++|+.|+++++.++... +..+++|++|+++++...+ .. ......|
T Consensus 81 ~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~l~~-l~----l~~l~~L 150 (457)
T 3bz5_A 81 LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNTLTE-ID----VSHNTQL 150 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSCCSC-CC----CTTCTTC
T ss_pred cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCeec----CCCCCcCCEEECCCCccce-ec----cccCCcC
Confidence 44466677777666543332 2556666777777766654321 4566677777776654322 11 1122345
Q ss_pred eEecccCcee-----eecCCCccEEEecCcccee--eccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHH
Q 014774 203 DFYGLGNCSL-----SVSCPKIQFLEVQGCSWIR--VQETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDA 275 (419)
Q Consensus 203 ~~l~~~~~~l-----~~~~~~L~~L~l~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 275 (419)
+.+.+.++.. ...+++|+.|+++++.+.. +...+.|+.|.++++. .....++.+++|+.|++++-.- ..
T Consensus 151 ~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~--l~~~~l~~l~~L~~L~Ls~N~l--~~ 226 (457)
T 3bz5_A 151 TELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNN--ITKLDLNQNIQLTFLDCSSNKL--TE 226 (457)
T ss_dssp CEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSC--CSCCCCTTCTTCSEEECCSSCC--SC
T ss_pred CEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCCc--CCeeccccCCCCCEEECcCCcc--cc
Confidence 5555444410 1234666667666665522 2335666666666531 1111345566777777733222 11
Q ss_pred HHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhh--hhcccccccccccccccccc
Q 014774 276 ISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAAL--CQKNSLKNVESGFVIPCLEE 353 (419)
Q Consensus 276 l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l--~~~~~l~~l~~~~~~p~L~~ 353 (419)
+. +..+++|+.|++....... .. ...+++|+.|+++++....+ ......+.++ ...|++|+.
T Consensus 227 ip--~~~l~~L~~L~l~~N~l~~---------~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~ 290 (457)
T 3bz5_A 227 ID--VTPLTQLTYFDCSVNPLTE---------LD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKE 290 (457)
T ss_dssp CC--CTTCTTCSEEECCSSCCSC---------CC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCC
T ss_pred cC--ccccCCCCEEEeeCCcCCC---------cC----HHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCE
Confidence 21 4456677777775422222 00 12345555555544332211 0000011112 124688888
Q ss_pred eeeeccCCCCchhh-hhhHHhh-hhcccchhhHHHHhhhhc
Q 014774 354 VVVTVRSPLNAEQK-MSTLESL-LKYGKNLKTMVIRILQMK 392 (419)
Q Consensus 354 l~l~~~~~~~~~~~-~~~l~~l-l~~~~~L~~L~i~~~~~~ 392 (419)
|+++++.....-.. ...+..+ +..+++|+.|.+..+.+.
T Consensus 291 L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~ 331 (457)
T 3bz5_A 291 LDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT 331 (457)
T ss_dssp CCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCS
T ss_pred EECCCCcccceeccCCCcceEechhhcccCCEEECCCCccc
Confidence 88887754321000 0011111 567788888888766554
No 29
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.06 E-value=6.7e-10 Score=102.53 Aligned_cols=156 Identities=11% Similarity=0.051 Sum_probs=78.3
Q ss_pred cCCCccEEEecCccceeecc--CCcCceeEeecccceEE-EeccCCCCCcCEeeeCCCCchHHHHHHHhccCCcccEEEe
Q 014774 215 SCPKIQFLEVQGCSWIRVQE--TNCLRNLSISNNAGRVY-MVDFGKLAALESLTLRGVQWCWDAISKMLYWASEVKHLYM 291 (419)
Q Consensus 215 ~~~~L~~L~l~~~~~~~l~~--~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l 291 (419)
.+++|+.|+++++.+..++. .+.|+.|+++++.-... ...+.++++|++|++++.... ......+..+++|++|++
T Consensus 169 ~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 247 (330)
T 1xku_A 169 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHL 247 (330)
T ss_dssp GCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCCEEEC
T ss_pred CCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc-eeChhhccCCCCCCEEEC
Confidence 35677777777766544433 45677777766421111 123456778888888432210 001113456788888888
Q ss_pred eeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeeccCCCCchhhhhhH
Q 014774 292 KVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRSPLNAEQKMSTL 371 (419)
Q Consensus 292 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~~~~l 371 (419)
+...... + ...+..+++|+.|++++|.+..+-. ..+.........+.|+.+++.+..-.. ....
T Consensus 248 ~~N~l~~------l-----p~~l~~l~~L~~L~l~~N~i~~~~~-~~f~~~~~~~~~~~l~~l~l~~N~~~~----~~i~ 311 (330)
T 1xku_A 248 NNNKLVK------V-----PGGLADHKYIQVVYLHNNNISAIGS-NDFCPPGYNTKKASYSGVSLFSNPVQY----WEIQ 311 (330)
T ss_dssp CSSCCSS------C-----CTTTTTCSSCCEEECCSSCCCCCCT-TSSSCSSCCTTSCCCSEEECCSSSSCG----GGSC
T ss_pred CCCcCcc------C-----ChhhccCCCcCEEECCCCcCCccCh-hhcCCcccccccccccceEeecCcccc----cccC
Confidence 6422222 0 1113456888888888776532200 001000001123667777776654221 1222
Q ss_pred HhhhhcccchhhHHHH
Q 014774 372 ESLLKYGKNLKTMVIR 387 (419)
Q Consensus 372 ~~ll~~~~~L~~L~i~ 387 (419)
...+.++++++.+.+.
T Consensus 312 ~~~f~~~~~l~~l~L~ 327 (330)
T 1xku_A 312 PSTFRCVYVRAAVQLG 327 (330)
T ss_dssp GGGGTTCCCGGGEEC-
T ss_pred ccccccccceeEEEec
Confidence 2345566777766553
No 30
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.06 E-value=8.7e-11 Score=107.88 Aligned_cols=210 Identities=12% Similarity=0.094 Sum_probs=114.4
Q ss_pred ccCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCccccccccccccccee
Q 014774 123 ISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKL 202 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L 202 (419)
+..+++|++|+++++.....+.+..+++|+.|+++++.+++ +..+++|++|+++++......
T Consensus 54 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~------l~~~~~L~~L~l~~n~l~~~~------------ 115 (317)
T 3o53_A 54 LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNISRVS------------ 115 (317)
T ss_dssp HTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSCCSEEE------------
T ss_pred hhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccc------ccCCCCcCEEECCCCccCCcC------------
Confidence 44466777777766543322235566677777777766443 123466777777665332111
Q ss_pred eEecccCceeeecCCCccEEEecCccceee-----ccCCcCceeEeecccceEEEe-cc-CCCCCcCEeeeCCCCchHHH
Q 014774 203 DFYGLGNCSLSVSCPKIQFLEVQGCSWIRV-----QETNCLRNLSISNNAGRVYMV-DF-GKLAALESLTLRGVQWCWDA 275 (419)
Q Consensus 203 ~~l~~~~~~l~~~~~~L~~L~l~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~-~~-~~~~~L~~L~l~~~~~~~~~ 275 (419)
....++|+.|+++++.+..+ ...+.|+.|+++++.-..... .+ ..+++|++|++++... ..
T Consensus 116 ----------~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l--~~ 183 (317)
T 3o53_A 116 ----------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI--YD 183 (317)
T ss_dssp ----------ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC--CE
T ss_pred ----------ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC--cc
Confidence 11235566666666655222 225566666666541111111 22 2467888888843222 11
Q ss_pred HHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhccccccccccccccccccee
Q 014774 276 ISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVV 355 (419)
Q Consensus 276 l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~ 355 (419)
+.. ...+++|++|+++...... + ...+..+++|+.|++++|.+..+.. .+ ..+++|+.|+
T Consensus 184 ~~~-~~~l~~L~~L~Ls~N~l~~---------l--~~~~~~l~~L~~L~L~~N~l~~l~~--~~------~~l~~L~~L~ 243 (317)
T 3o53_A 184 VKG-QVVFAKLKTLDLSSNKLAF---------M--GPEFQSAAGVTWISLRNNKLVLIEK--AL------RFSQNLEHFD 243 (317)
T ss_dssp EEC-CCCCTTCCEEECCSSCCCE---------E--CGGGGGGTTCSEEECTTSCCCEECT--TC------CCCTTCCEEE
T ss_pred ccc-ccccccCCEEECCCCcCCc---------c--hhhhcccCcccEEECcCCcccchhh--Hh------hcCCCCCEEE
Confidence 111 2247788888886422222 0 0114566889999988876543211 11 1358888998
Q ss_pred eeccCCCCchhhhhhHHhhhhcccchhhHHHH
Q 014774 356 VTVRSPLNAEQKMSTLESLLKYGKNLKTMVIR 387 (419)
Q Consensus 356 l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~ 387 (419)
++++.- +. ..+...+..+++|+.+.+.
T Consensus 244 l~~N~~-~~----~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 244 LRGNGF-HC----GTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CTTCCC-BH----HHHHHHHHTCHHHHHHHHH
T ss_pred ccCCCc-cC----cCHHHHHhccccceEEECC
Confidence 887653 31 2345556778888888887
No 31
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.04 E-value=1.6e-10 Score=105.51 Aligned_cols=214 Identities=17% Similarity=0.098 Sum_probs=114.1
Q ss_pred CCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHH-HHHHHhcCCCCcEEEccCCCCccccccccccccccee
Q 014774 126 AKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPA-LSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKL 202 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~-l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L 202 (419)
.++|++|++.++.....+ .+..+++|+.|+++++.++..+ .......+++|++|+++++....-. .......+|
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~---~~~~~l~~L 103 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS---SNFLGLEQL 103 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEE---EEEETCTTC
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccCh---hhcCCCCCC
Confidence 468999999887654444 2567889999999988765321 0112346889999999887543211 001112345
Q ss_pred eEecccCcee--------eecCCCccEEEecCcccee-----eccCCcCceeEeeccc--ceEEEeccCCCCCcCEeeeC
Q 014774 203 DFYGLGNCSL--------SVSCPKIQFLEVQGCSWIR-----VQETNCLRNLSISNNA--GRVYMVDFGKLAALESLTLR 267 (419)
Q Consensus 203 ~~l~~~~~~l--------~~~~~~L~~L~l~~~~~~~-----l~~~~~L~~L~l~~~~--~~~~~~~~~~~~~L~~L~l~ 267 (419)
+.+.+.++.+ ...+++|+.|+++++.+.. +...++|+.|.++++. +......+..+++|++|+++
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 5555544421 1234677777777765532 2235677777776541 11122234556777777774
Q ss_pred CCCchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccc
Q 014774 268 GVQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFV 347 (419)
Q Consensus 268 ~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~ 347 (419)
+.... ......+..+++|++|+++.....+.. ...+..+++|+.|++++|.+...-. ..+. .
T Consensus 184 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~------~ 245 (306)
T 2z66_A 184 QCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLD----------TFPYKCLNSLQVLDYSLNHIMTSKK-QELQ------H 245 (306)
T ss_dssp TSCCC-EECTTTTTTCTTCCEEECTTSCCSBCC----------SGGGTTCTTCCEEECTTSCCCBCSS-SSCC------C
T ss_pred CCCcC-CcCHHHhcCCCCCCEEECCCCccCccC----------hhhccCcccCCEeECCCCCCcccCH-HHHH------h
Confidence 32210 011123455677777777542221100 0113456777777777665432100 0011 1
Q ss_pred c-ccccceeeeccC
Q 014774 348 I-PCLEEVVVTVRS 360 (419)
Q Consensus 348 ~-p~L~~l~l~~~~ 360 (419)
+ ++|+.|+++++.
T Consensus 246 ~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 246 FPSSLAFLNLTQND 259 (306)
T ss_dssp CCTTCCEEECTTCC
T ss_pred hhccCCEEEccCCC
Confidence 2 377777776654
No 32
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.04 E-value=7.3e-10 Score=101.22 Aligned_cols=169 Identities=18% Similarity=0.178 Sum_probs=92.3
Q ss_pred cccCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccce
Q 014774 122 CISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCK 201 (419)
Q Consensus 122 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~ 201 (419)
.+..+++|+.|+++++.....+.+..+++|+.|+++++.+++.. .+..+++|++|++++|.......
T Consensus 58 ~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~~---------- 124 (308)
T 1h6u_A 58 GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQITDVTP---------- 124 (308)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG---GGTTCTTCCEEECTTSCCCCCGG----------
T ss_pred hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch---hhcCCCCCCEEECCCCCCCCchh----------
Confidence 34456777777777765444334566777777777777654421 24567777777777664321110
Q ss_pred eeEecccCceeeecCCCccEEEecCccceee---ccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHHHHH
Q 014774 202 LDFYGLGNCSLSVSCPKIQFLEVQGCSWIRV---QETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDAISK 278 (419)
Q Consensus 202 L~~l~~~~~~l~~~~~~L~~L~l~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~ 278 (419)
...+++|+.|+++++.+..+ ...++|+.|+++++.-. ....+..+++|+.|++++... ..+..
T Consensus 125 -----------l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~l~~n~l--~~~~~ 190 (308)
T 1h6u_A 125 -----------LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKADDNKI--SDISP 190 (308)
T ss_dssp -----------GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCC--CCCGG
T ss_pred -----------hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCC-CChhhcCCCCCCEEECCCCcc--CcChh
Confidence 13457777777777765332 23566777777664110 011244567777777733221 11111
Q ss_pred HhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchh
Q 014774 279 MLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMF 330 (419)
Q Consensus 279 l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 330 (419)
+..+++|++|+++.....+ . .. +..+++|+.|+++++.+
T Consensus 191 -l~~l~~L~~L~L~~N~l~~---------~--~~-l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 191 -LASLPNLIEVHLKNNQISD---------V--SP-LANTSNLFIVTLTNQTI 229 (308)
T ss_dssp -GGGCTTCCEEECTTSCCCB---------C--GG-GTTCTTCCEEEEEEEEE
T ss_pred -hcCCCCCCEEEccCCccCc---------c--cc-ccCCCCCCEEEccCCee
Confidence 4556777777775422222 0 11 34567777777776554
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.03 E-value=5.3e-10 Score=109.95 Aligned_cols=105 Identities=22% Similarity=0.234 Sum_probs=66.1
Q ss_pred HHHhCCCcceEEEec-CCCcchHHHHHHHhcCCceEEEEEecCccccccccCCCcccccccCCCCccEEEecCccccC--
Q 014774 65 MIYSIVCLEELVVYT-PFSKAGLDSWLMLAGSTLKHLELRMDNLADYQGCLENPSKLDCISRAKNLESLKLWGVLMVS-- 141 (419)
Q Consensus 65 ~l~~~~~L~~l~l~~-~~~~~~~~~w~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~-- 141 (419)
.+....+|+.|.++. ...... +..+ ...+.|++|+++..... .++.. .+++|++|+++++....
T Consensus 40 ~~~~l~~L~~L~Ls~n~l~~~~-~~~~-~~l~~L~~L~Ls~N~l~----------~lp~~-~l~~L~~L~L~~N~l~~~~ 106 (520)
T 2z7x_B 40 DILSLSKLRILIISHNRIQYLD-ISVF-KFNQELEYLDLSHNKLV----------KISCH-PTVNLKHLDLSFNAFDALP 106 (520)
T ss_dssp HHTTCTTCCEEECCSSCCCEEE-GGGG-TTCTTCCEEECCSSCCC----------EEECC-CCCCCSEEECCSSCCSSCC
T ss_pred hccccccccEEecCCCccCCcC-hHHh-hcccCCCEEecCCCcee----------ecCcc-ccCCccEEeccCCcccccc
Confidence 344567788888843 222210 1111 12367888877644322 12222 57899999999876543
Q ss_pred Cc-ccccCCCccEEEecCeeeChHHHHHHHhcCCCC--cEEEccCCCC
Q 014774 142 SP-KWDVFHKLQNLEIVGARLEDPALSTALRACPNL--TNLLLLGCEG 186 (419)
Q Consensus 142 ~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L--~~L~l~~c~~ 186 (419)
.+ .+..+++|+.|+++++.++... +..+++| ++|++.++..
T Consensus 107 ~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 107 ICKEFGNMSQLKFLGLSTTHLEKSS----VLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCGGGGGCTTCCEEEEEESSCCGGG----GGGGTTSCEEEEEEEECTT
T ss_pred chhhhccCCcceEEEecCcccchhh----ccccccceeeEEEeecccc
Confidence 23 5678999999999999877643 3556777 8888887754
No 34
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.02 E-value=1.7e-10 Score=106.60 Aligned_cols=153 Identities=12% Similarity=0.080 Sum_probs=73.7
Q ss_pred CccEEEecCccceeecc--CCcCceeEeecccceEEE-eccCCCCCcCEeeeCCCCchHHHHHHHhccCCcccEEEeeee
Q 014774 218 KIQFLEVQGCSWIRVQE--TNCLRNLSISNNAGRVYM-VDFGKLAALESLTLRGVQWCWDAISKMLYWASEVKHLYMKVE 294 (419)
Q Consensus 218 ~L~~L~l~~~~~~~l~~--~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~ 294 (419)
+|+.|+++++.+..++. .++|+.|+++++.-.... ..+..+++|+.|++++-... ......+..+++|++|+++..
T Consensus 173 ~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNN 251 (332)
T ss_dssp CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC-CCCTTGGGGCTTCCEEECCSS
T ss_pred ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC-cCChhHhhCCCCCCEEECCCC
Confidence 55666666655533332 356666666653111011 12445677777777432110 001112456778888888542
Q ss_pred ecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeeccCCCCchhhhhhHHhh
Q 014774 295 FTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRSPLNAEQKMSTLESL 374 (419)
Q Consensus 295 ~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~l 374 (419)
.... + ...+..+++|+.|++++|.+..+-. ..+.........+.|+.+++.+..... ....+..
T Consensus 252 ~l~~------l-----p~~l~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~~~~~~~l~~L~l~~N~~~~----~~~~~~~ 315 (332)
T 2ft3_A 252 KLSR------V-----PAGLPDLKLLQVVYLHTNNITKVGV-NDFCPVGFGVKRAYYNGISLFNNPVPY----WEVQPAT 315 (332)
T ss_dssp CCCB------C-----CTTGGGCTTCCEEECCSSCCCBCCT-TSSSCSSCCSSSCCBSEEECCSSSSCG----GGSCGGG
T ss_pred cCee------c-----ChhhhcCccCCEEECCCCCCCccCh-hHccccccccccccccceEeecCcccc----cccCccc
Confidence 2221 1 1113567788888888765432200 001111111124667778777654321 1222344
Q ss_pred hhcccchhhHHHH
Q 014774 375 LKYGKNLKTMVIR 387 (419)
Q Consensus 375 l~~~~~L~~L~i~ 387 (419)
+..+++|+.+.+.
T Consensus 316 ~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 316 FRCVTDRLAIQFG 328 (332)
T ss_dssp GTTBCCSTTEEC-
T ss_pred ccccchhhhhhcc
Confidence 5667777776653
No 35
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.01 E-value=2.8e-10 Score=110.83 Aligned_cols=211 Identities=12% Similarity=0.080 Sum_probs=108.9
Q ss_pred cccCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccce
Q 014774 122 CISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCK 201 (419)
Q Consensus 122 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~ 201 (419)
.+..+++|+.|+|+++.....+.+..+++|+.|+|++|.+++ +...++|+.|++++|...+..
T Consensus 53 ~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L~~N~l~~~~----------- 115 (487)
T 3oja_A 53 DLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNISRVS----------- 115 (487)
T ss_dssp GGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSCCCCEE-----------
T ss_pred HHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEECcCCcCCCCC-----------
Confidence 344566777777766554322335666777777777776543 123466777777666432211
Q ss_pred eeEecccCceeeecCCCccEEEecCcccee-----eccCCcCceeEeecccceE-EEeccC-CCCCcCEeeeCCCCchHH
Q 014774 202 LDFYGLGNCSLSVSCPKIQFLEVQGCSWIR-----VQETNCLRNLSISNNAGRV-YMVDFG-KLAALESLTLRGVQWCWD 274 (419)
Q Consensus 202 L~~l~~~~~~l~~~~~~L~~L~l~~~~~~~-----l~~~~~L~~L~l~~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~ 274 (419)
....++|+.|++++|.+.. +..+++|+.|+++++.-.. ....+. .+++|+.|++++... .
T Consensus 116 -----------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l--~ 182 (487)
T 3oja_A 116 -----------CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI--Y 182 (487)
T ss_dssp -----------ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC--C
T ss_pred -----------ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc--c
Confidence 1123556666666655422 2225566666666541111 111222 467777777743221 1
Q ss_pred HHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccce
Q 014774 275 AISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEV 354 (419)
Q Consensus 275 ~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l 354 (419)
.+.. ...+++|+.|+++....+. + ..-+..+++|+.|++++|.+..+-. .+ ..+++|+.+
T Consensus 183 ~~~~-~~~l~~L~~L~Ls~N~l~~---------~--~~~~~~l~~L~~L~Ls~N~l~~lp~--~l------~~l~~L~~L 242 (487)
T 3oja_A 183 DVKG-QVVFAKLKTLDLSSNKLAF---------M--GPEFQSAAGVTWISLRNNKLVLIEK--AL------RFSQNLEHF 242 (487)
T ss_dssp EEEC-CCCCTTCCEEECCSSCCCE---------E--CGGGGGGTTCSEEECTTSCCCEECT--TC------CCCTTCCEE
T ss_pred cccc-cccCCCCCEEECCCCCCCC---------C--CHhHcCCCCccEEEecCCcCcccch--hh------ccCCCCCEE
Confidence 1111 2246777777775422221 0 0113456778888887765432200 01 124777888
Q ss_pred eeeccCCCCchhhhhhHHhhhhcccchhhHHHH
Q 014774 355 VVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIR 387 (419)
Q Consensus 355 ~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~ 387 (419)
+++++.... ..+...+..++.|+.+.+.
T Consensus 243 ~l~~N~l~c-----~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 243 DLRGNGFHC-----GTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECTTCCBCH-----HHHHHHHTTCHHHHHHHHH
T ss_pred EcCCCCCcC-----cchHHHHHhCCCCcEEecc
Confidence 877654321 1234455667777777774
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.01 E-value=9.4e-11 Score=122.08 Aligned_cols=63 Identities=11% Similarity=0.134 Sum_probs=32.9
Q ss_pred ccCCCCccEEEecCccccCC-c---ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCC
Q 014774 123 ISRAKNLESLKLWGVLMVSS-P---KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCE 185 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~-~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~ 185 (419)
+..+++|++|+|+++..... + .+..+++|+.|+|++|.++.......+.++++|++|+++++.
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 44456666666666543221 1 145566666666666654332222234556666666666553
No 37
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.01 E-value=1.9e-10 Score=118.53 Aligned_cols=198 Identities=15% Similarity=0.092 Sum_probs=124.8
Q ss_pred cccCCCCccEEEecCcccc-CCc-c-cccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccc
Q 014774 122 CISRAKNLESLKLWGVLMV-SSP-K-WDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLE 198 (419)
Q Consensus 122 ~l~~~~~L~~L~L~~~~~~-~~~-~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~ 198 (419)
.++.+++|++|++.++... ..+ . +..+++|+.|++++|.++...-..+....++|+.|++++|...+...-......
T Consensus 313 ~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~ 392 (768)
T 3rgz_A 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP 392 (768)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCST
T ss_pred HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcc
Confidence 3556899999999988653 334 2 678999999999999865322222222234999999998864332111111111
Q ss_pred cceeeEecccCceee-------ecCCCccEEEecCccce-----eeccCCcCceeEeecccce-EEEeccCCCCCcCEee
Q 014774 199 QCKLDFYGLGNCSLS-------VSCPKIQFLEVQGCSWI-----RVQETNCLRNLSISNNAGR-VYMVDFGKLAALESLT 265 (419)
Q Consensus 199 ~~~L~~l~~~~~~l~-------~~~~~L~~L~l~~~~~~-----~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~ 265 (419)
...|+.+.+.+|.+. ..+++|+.|++++|.+. .+..+++|+.|.++++.-. .....++.+++|+.|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 336777777776532 24678999999988763 2334788999998875211 1122455688999999
Q ss_pred eCCCCchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchh
Q 014774 266 LRGVQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMF 330 (419)
Q Consensus 266 l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 330 (419)
+++.... ..+...+..+++|+.|++......+ . +...+..+++|+.|++++|.+
T Consensus 473 L~~N~l~-~~~p~~l~~l~~L~~L~L~~N~l~~-~---------~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 473 LDFNDLT-GEIPSGLSNCTNLNWISLSNNRLTG-E---------IPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp CCSSCCC-SCCCGGGGGCTTCCEEECCSSCCCS-C---------CCGGGGGCTTCCEEECCSSCC
T ss_pred ecCCccc-CcCCHHHhcCCCCCEEEccCCccCC-c---------CChHHhcCCCCCEEECCCCcc
Confidence 9442220 1223346678999999996532222 0 122345678888888888765
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.99 E-value=6.8e-10 Score=112.91 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=44.3
Q ss_pred ccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCc-ccc-cccccccccceeeEecccCcee-------eecC
Q 014774 146 DVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGV-RSV-SIELPHLEQCKLDFYGLGNCSL-------SVSC 216 (419)
Q Consensus 146 ~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~-~~~-~~~~~~l~~~~L~~l~~~~~~l-------~~~~ 216 (419)
..+++|+.|+++++.++... ...+..+++|++|++++|... ... ...+.......|+.+++.++.+ ...+
T Consensus 326 ~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPGIK-SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTCTTCCEEECCSCCBCCCC-TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred ccCCCCCEEECCCCccCCCC-hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 44566666666666543211 112345666666666655311 100 0001111112444444443321 1134
Q ss_pred CCccEEEecCccce-e-----eccCCcCceeEeecc
Q 014774 217 PKIQFLEVQGCSWI-R-----VQETNCLRNLSISNN 246 (419)
Q Consensus 217 ~~L~~L~l~~~~~~-~-----l~~~~~L~~L~l~~~ 246 (419)
++|+.|+++++.+. . +..+++|+.|+++++
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 56666666665542 1 122555666666553
No 39
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.99 E-value=3.5e-10 Score=106.85 Aligned_cols=116 Identities=12% Similarity=0.073 Sum_probs=57.8
Q ss_pred cCCCCCcCEeeeCCCCch---HHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhh--cCCCeeEEEecCch
Q 014774 255 FGKLAALESLTLRGVQWC---WDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFN--NHPKLQKFDIHGAM 329 (419)
Q Consensus 255 ~~~~~~L~~L~l~~~~~~---~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~ 329 (419)
+..+++|+.|++++.... ...+...+..+++|++|+++....++ .+. ..+...+. .+++|++|++++|.
T Consensus 212 l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~-~~~-----~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA-RGA-----AAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH-HHH-----HHHHHHHHTCSSCCCCEEECCSSC
T ss_pred hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch-hhH-----HHHHHHHhhccCCCeEEEECcCCc
Confidence 345677888887443221 12344556677888888885432322 100 00122222 26788888888775
Q ss_pred hHh-----hhhcccccccccccccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHH
Q 014774 330 FAA-----LCQKNSLKNVESGFVIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVI 386 (419)
Q Consensus 330 ~~~-----l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i 386 (419)
+.. +.. .+ ...+|+|+.|+++++.- ++.+ ..+..+.+..++++.+.+
T Consensus 286 i~~~g~~~l~~--~l-----~~~l~~L~~L~l~~N~l-~~~~--~~~~~l~~~l~~~~~~~l 337 (386)
T 2ca6_A 286 IELDAVRTLKT--VI-----DEKMPDLLFLELNGNRF-SEED--DVVDEIREVFSTRGRGEL 337 (386)
T ss_dssp CBHHHHHHHHH--HH-----HHHCTTCCEEECTTSBS-CTTS--HHHHHHHHHHHHHTCCEE
T ss_pred CCHHHHHHHHH--HH-----HhcCCCceEEEccCCcC-Ccch--hHHHHHHHHhhhcCcchh
Confidence 432 211 01 01247888888877653 3221 223334444455543333
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.98 E-value=2.9e-10 Score=103.78 Aligned_cols=108 Identities=15% Similarity=0.201 Sum_probs=67.4
Q ss_pred cCCCccEEEecCcccee------eccCCcCceeEeecccceEE-EeccCCCCCcCEeeeCCCCchHHHH-HHHhccCCcc
Q 014774 215 SCPKIQFLEVQGCSWIR------VQETNCLRNLSISNNAGRVY-MVDFGKLAALESLTLRGVQWCWDAI-SKMLYWASEV 286 (419)
Q Consensus 215 ~~~~L~~L~l~~~~~~~------l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~l-~~l~~~~~~L 286 (419)
.+++|+.|+++++.+.. +...++|+.|+++++.-... ...+..+++|++|++++-.. ..+ ...+..+++|
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L 225 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF--FSLDTFPYKCLNSL 225 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--SBCCSGGGTTCTTC
T ss_pred cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc--CccChhhccCcccC
Confidence 45889999998886632 23478999999987521111 12355689999999954221 111 1125678999
Q ss_pred cEEEeeeeecCCCCCCcCCCCcCHHHHhhcC-CCeeEEEecCchhHhhh
Q 014774 287 KHLYMKVEFTGDFDTLQPFPEVDFVEFFNNH-PKLQKFDIHGAMFAALC 334 (419)
Q Consensus 287 ~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~ 334 (419)
+.|+++...... .. ...+..+ ++|+.|++++|.+.+-|
T Consensus 226 ~~L~L~~N~l~~-~~---------~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 226 QVLDYSLNHIMT-SK---------KQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CEEECTTSCCCB-CS---------SSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CEeECCCCCCcc-cC---------HHHHHhhhccCCEEEccCCCeeccc
Confidence 999997532222 00 0112344 48999999998775444
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.98 E-value=7.1e-09 Score=96.57 Aligned_cols=152 Identities=20% Similarity=0.167 Sum_probs=90.7
Q ss_pred cccCCCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCccccccccccccc
Q 014774 122 CISRAKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQ 199 (419)
Q Consensus 122 ~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~ 199 (419)
.+..+++|++|++.++.....+ .+..+++|+.|+++++.++... ...+.++++|++|+++++....-...
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l~~~------- 142 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTFLNLLGNPYKTLGET------- 142 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTCSEEECTTCCCSSSCSS-------
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccCCEEECCCCCCcccCch-------
Confidence 3555788888888876543222 3567888888888888765321 23356788888888887743321100
Q ss_pred ceeeEecccCceeeecCCCccEEEecCcc-cee-----eccCCcCceeEeecccce-EEEeccCCCCCcCEeeeCCCCch
Q 014774 200 CKLDFYGLGNCSLSVSCPKIQFLEVQGCS-WIR-----VQETNCLRNLSISNNAGR-VYMVDFGKLAALESLTLRGVQWC 272 (419)
Q Consensus 200 ~~L~~l~~~~~~l~~~~~~L~~L~l~~~~-~~~-----l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~ 272 (419)
.....+++|+.|+++++. +.. +...++|+.|+++++.-. .....+..+++|++|++++....
T Consensus 143 -----------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 143 -----------SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp -----------CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred -----------hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 011345777777777763 322 223667777777764211 11123556788888888443220
Q ss_pred HHHHHHHhccCCcccEEEeee
Q 014774 273 WDAISKMLYWASEVKHLYMKV 293 (419)
Q Consensus 273 ~~~l~~l~~~~~~L~~L~l~~ 293 (419)
.........+++|+.|+++.
T Consensus 212 -~~~~~~~~~~~~L~~L~L~~ 231 (353)
T 2z80_A 212 -LLLEIFVDVTSSVECLELRD 231 (353)
T ss_dssp -THHHHHHHHTTTEEEEEEES
T ss_pred -cchhhhhhhcccccEEECCC
Confidence 12223455688899999965
No 42
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.97 E-value=9.9e-10 Score=106.04 Aligned_cols=213 Identities=15% Similarity=0.110 Sum_probs=99.8
Q ss_pred CCCccEEEecCccccCC--cccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceee
Q 014774 126 AKNLESLKLWGVLMVSS--PKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLD 203 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~ 203 (419)
.++++.|+|.++..... ..+..+++|+.|+|+++.++.... ..+.++++|++|+++++...... -... ....+|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~-~~~~-~~l~~L~ 150 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIP-SGAF-EYLSKLR 150 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCC-TTTS-SSCTTCC
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccC-hhhh-cccCCCC
Confidence 45777777776543222 245677778888887776443211 12356777888887776432111 0000 0112333
Q ss_pred EecccCcee-------eecCCCccEEEecCccc-ee-----eccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCC
Q 014774 204 FYGLGNCSL-------SVSCPKIQFLEVQGCSW-IR-----VQETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQ 270 (419)
Q Consensus 204 ~l~~~~~~l-------~~~~~~L~~L~l~~~~~-~~-----l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 270 (419)
.++++++.+ ...+++|+.|+++++.. .. +...++|+.|+++++.-. ....+..+++|+.|++++..
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNH 229 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCCCTTCTTCCEEECTTSC
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccccccccccccEEECcCCc
Confidence 333333221 12346666666665422 11 223556666666654110 01134446666666663321
Q ss_pred chHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhccccccccccccccc
Q 014774 271 WCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPC 350 (419)
Q Consensus 271 ~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~ 350 (419)
.. ......+..+++|+.|++....... +. ...+..+++|+.|++++|.+..+-. ..+ ..+++
T Consensus 230 l~-~~~~~~~~~l~~L~~L~L~~n~l~~---------~~-~~~~~~l~~L~~L~L~~N~l~~~~~-~~~------~~l~~ 291 (452)
T 3zyi_A 230 FP-EIRPGSFHGLSSLKKLWVMNSQVSL---------IE-RNAFDGLASLVELNLAHNNLSSLPH-DLF------TPLRY 291 (452)
T ss_dssp CS-EECGGGGTTCTTCCEEECTTSCCCE---------EC-TTTTTTCTTCCEEECCSSCCSCCCT-TSS------TTCTT
T ss_pred Cc-ccCcccccCccCCCEEEeCCCcCce---------EC-HHHhcCCCCCCEEECCCCcCCccCh-HHh------ccccC
Confidence 10 0111234456666666664311111 00 1113445667777776654432100 001 12466
Q ss_pred ccceeeeccC
Q 014774 351 LEEVVVTVRS 360 (419)
Q Consensus 351 L~~l~l~~~~ 360 (419)
|+.|++++..
T Consensus 292 L~~L~L~~Np 301 (452)
T 3zyi_A 292 LVELHLHHNP 301 (452)
T ss_dssp CCEEECCSSC
T ss_pred CCEEEccCCC
Confidence 7777765543
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.97 E-value=7.1e-10 Score=106.67 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=37.3
Q ss_pred CCCccEEEecCccccCC--cccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCC
Q 014774 126 AKNLESLKLWGVLMVSS--PKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCE 185 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~ 185 (419)
.++++.|+|.++..... ..+..+++|+.|+|+++.++.... ..+.++++|++|+++++.
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNR 123 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSC
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCc
Confidence 46778888877653322 245677888888888776443211 124567888888887764
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.96 E-value=1e-09 Score=111.61 Aligned_cols=40 Identities=8% Similarity=0.017 Sum_probs=22.2
Q ss_pred ccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhhhh
Q 014774 347 VIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQM 391 (419)
Q Consensus 347 ~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~ 391 (419)
.+++|+.|+++++. +++ ......+..+++|+.|.+..+.+
T Consensus 403 ~l~~L~~L~L~~N~-l~~----~~~~~~~~~l~~L~~L~Ls~n~l 442 (680)
T 1ziw_A 403 WLGHLEVLDLGLNE-IGQ----ELTGQEWRGLENIFEIYLSYNKY 442 (680)
T ss_dssp TCTTCCEEECCSSC-CEE----ECCSGGGTTCTTCCEEECCSCSE
T ss_pred CCCCCCEEeCCCCc-Ccc----ccCcccccCcccccEEecCCCCc
Confidence 35677777776543 221 11113346677888877765544
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.96 E-value=3.5e-10 Score=105.48 Aligned_cols=230 Identities=15% Similarity=0.132 Sum_probs=141.0
Q ss_pred CCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceee
Q 014774 126 AKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLD 203 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~ 203 (419)
.++|++|+++++.....+ .+..+++|+.|+++++.+++.. ...+.++++|++|+++++...+-. .
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~-~----------- 117 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNYLSNLS-S----------- 117 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSSCC-H-----------
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC-HhhcCCCCCCCEEECCCCcCCcCC-H-----------
Confidence 569999999887643333 4678999999999998865321 122467899999999887533211 0
Q ss_pred EecccCceeeecCCCccEEEecCcccee------eccCCcCceeEeeccc--ceEEEeccCCCCCcCEeeeCCCCchHHH
Q 014774 204 FYGLGNCSLSVSCPKIQFLEVQGCSWIR------VQETNCLRNLSISNNA--GRVYMVDFGKLAALESLTLRGVQWCWDA 275 (419)
Q Consensus 204 ~l~~~~~~l~~~~~~L~~L~l~~~~~~~------l~~~~~L~~L~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 275 (419)
.....+++|+.|+++++.+.. +...++|+.|+++++. +......+.++++|++|++++.... ..
T Consensus 118 -------~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~ 189 (353)
T 2z80_A 118 -------SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SY 189 (353)
T ss_dssp -------HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-EE
T ss_pred -------hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-cc
Confidence 001346788889988876633 3347899999998752 1111224566899999999432210 11
Q ss_pred HHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhh-----h---ccccccc-----
Q 014774 276 ISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALC-----Q---KNSLKNV----- 342 (419)
Q Consensus 276 l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~-----~---~~~l~~l----- 342 (419)
....+..+++|++|+++....+. + ...+...+++|+.|+++++.+.... . ...++.+
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~~---------~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHIL---------L-LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCSTT---------H-HHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred CHHHHhccccCCeecCCCCcccc---------c-hhhhhhhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence 12235678999999997532222 1 1334556899999999987653210 0 0011110
Q ss_pred ----------c-cccccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhhhhc
Q 014774 343 ----------E-SGFVIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQMK 392 (419)
Q Consensus 343 ----------~-~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~~ 392 (419)
+ .-..+++|+.|+++++. ++. ....++..+++|+.|.+..+.+.
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~-----i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQ-LKS-----VPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCC-----CCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCC-CCc-----cCHHHHhcCCCCCEEEeeCCCcc
Confidence 0 01235788888887653 331 12234567888888888877654
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.95 E-value=4.3e-10 Score=111.81 Aligned_cols=239 Identities=15% Similarity=0.172 Sum_probs=139.0
Q ss_pred ccCCCCccEEEecCccccCCcc-cccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccce
Q 014774 123 ISRAKNLESLKLWGVLMVSSPK-WDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCK 201 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~ 201 (419)
+..+++|+.|++.++.....+. +..+ +|+.|+++++.++.-. . ..+++|+.|.+.++........ .....
T Consensus 278 ~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~--~--~~l~~L~~L~l~~n~~~~~~~~----~~~~~ 348 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFP--T--LKLKSLKRLTFTSNKGGNAFSE----VDLPS 348 (570)
T ss_dssp TGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCC--B--CBCSSCCEEEEESCBSCCBCCC----CBCTT
T ss_pred hcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccC--c--ccccccCEEeCcCCcccccccc----ccCCC
Confidence 3447788888888776554443 3445 8888888888754211 1 4678888888887764433211 23345
Q ss_pred eeEecccCcee---------eecCCCccEEEecCcccee----eccCCcCceeEeeccc--ceEEEeccCCCCCcCEeee
Q 014774 202 LDFYGLGNCSL---------SVSCPKIQFLEVQGCSWIR----VQETNCLRNLSISNNA--GRVYMVDFGKLAALESLTL 266 (419)
Q Consensus 202 L~~l~~~~~~l---------~~~~~~L~~L~l~~~~~~~----l~~~~~L~~L~l~~~~--~~~~~~~~~~~~~L~~L~l 266 (419)
|+.++++++.+ ...+++|+.|+++++.+.. +..+++|+.|+++++. +......+..+++|++|++
T Consensus 349 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp CCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred CCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 66666555432 1246788888888776532 3347778888777641 1000012445778888888
Q ss_pred CCCCchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhccccccccccc
Q 014774 267 RGVQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGF 346 (419)
Q Consensus 267 ~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~ 346 (419)
++.... ......+..+++|+.|++......+ . .+...+..+++|+.|++++|.+...-. ..+ .
T Consensus 429 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~-~--------~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~~------~ 491 (570)
T 2z63_A 429 SHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQE-N--------FLPDIFTELRNLTFLDLSQCQLEQLSP-TAF------N 491 (570)
T ss_dssp TTSCCE-ECCTTTTTTCTTCCEEECTTCEEGG-G--------EECSCCTTCTTCCEEECTTSCCCEECT-TTT------T
T ss_pred cCCccc-ccchhhhhcCCcCcEEECcCCcCcc-c--------cchhhhhcccCCCEEECCCCccccCCh-hhh------h
Confidence 442210 1122235567888888885422211 0 001123567888888888765432100 011 1
Q ss_pred ccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhhhhcc
Q 014774 347 VIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQMKS 393 (419)
Q Consensus 347 ~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~~~ 393 (419)
.+++|+.|+++++. +++ .....+..+++|+.|.+..+.+..
T Consensus 492 ~l~~L~~L~l~~n~-l~~-----~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 492 SLSSLQVLNMASNQ-LKS-----VPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TCTTCCEEECCSSC-CSC-----CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccCCCEEeCCCCc-CCC-----CCHHHhhcccCCcEEEecCCcccC
Confidence 35889999998763 332 223346778999999998887753
No 47
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=2.6e-09 Score=110.32 Aligned_cols=189 Identities=10% Similarity=0.025 Sum_probs=98.6
Q ss_pred ccCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCC-CcEEEccCCCCcccccccccccccce
Q 014774 123 ISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPN-LTNLLLLGCEGVRSVSIELPHLEQCK 201 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~-L~~L~l~~c~~~~~~~~~~~~l~~~~ 201 (419)
++.+++|+.|+|+++.....+.+..+++|+.|+|+++.++ .+..-+..+++ |+.|+++++... ...-........+
T Consensus 569 l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~ 645 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYV 645 (876)
T ss_dssp HTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSC
T ss_pred hhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCC
Confidence 5557778888887765444445567777888888777755 22223456677 888888777533 1110111111223
Q ss_pred eeEecccCceeee------------cCCCccEEEecCccceeec-----cCCcCceeEeecccceEEEecc--------C
Q 014774 202 LDFYGLGNCSLSV------------SCPKIQFLEVQGCSWIRVQ-----ETNCLRNLSISNNAGRVYMVDF--------G 256 (419)
Q Consensus 202 L~~l~~~~~~l~~------------~~~~L~~L~l~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~--------~ 256 (419)
|+.+.++++.+.. ..++|+.|++++|.+..++ .+++|+.|+++++.-......+ .
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~ 725 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCT
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccccccc
Confidence 6666655543211 2236777777777664443 2466777777664111000011 1
Q ss_pred CCCCcCEeeeCCCCchHHHHHHHhc--cCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecC
Q 014774 257 KLAALESLTLRGVQWCWDAISKMLY--WASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHG 327 (419)
Q Consensus 257 ~~~~L~~L~l~~~~~~~~~l~~l~~--~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 327 (419)
++++|+.|++++... ..+...+. .+++|+.|+++...... + ...+..+++|+.|++++
T Consensus 726 nl~~L~~L~Ls~N~L--~~lp~~l~~~~l~~L~~L~Ls~N~L~~---l--------p~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 726 NTYLLTTIDLRFNKL--TSLSDDFRATTLPYLSNMDVSYNCFSS---F--------PTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp TGGGCCEEECCSSCC--CCCCGGGSTTTCTTCCEEECCSSCCSS---C--------CCGGGGCTTCCEEECCC
T ss_pred ccCCccEEECCCCCC--ccchHHhhhccCCCcCEEEeCCCCCCc---c--------chhhhcCCCCCEEECCC
Confidence 123777777743222 11222232 56777777775422211 0 11133567777777754
No 48
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.95 E-value=2.2e-09 Score=98.02 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=29.6
Q ss_pred CCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCC
Q 014774 126 AKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCE 185 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~ 185 (419)
+++|++|++.++.....+.+..+++|+.|+++++.+++..- +..+++|++|+++++.
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGNP 96 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSCC
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCCc
Confidence 44556666655543333344555666666666555433211 4455666666665553
No 49
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.93 E-value=2.8e-09 Score=107.36 Aligned_cols=125 Identities=13% Similarity=0.086 Sum_probs=75.2
Q ss_pred cccc--CCCCccEEEecCcccc-CCc-ccccCCCccEEEecCee-eChHHHHHHHh------cCCCCcEEEccCCCCccc
Q 014774 121 DCIS--RAKNLESLKLWGVLMV-SSP-KWDVFHKLQNLEIVGAR-LEDPALSTALR------ACPNLTNLLLLGCEGVRS 189 (419)
Q Consensus 121 ~~l~--~~~~L~~L~L~~~~~~-~~~-~~~~~~~L~~L~L~~~~-~~~~~l~~l~~------~~p~L~~L~l~~c~~~~~ 189 (419)
..++ .+++|++|++.++... ..| .+..+++|+.|+++++. ++...+..-+. .+++|++|++++|....-
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~i 320 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSC
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCcc
Confidence 3455 6889999999987533 333 46789999999999998 77633333333 358999999988854311
Q ss_pred ccccccccccceeeEecccCceee------ecCCCccEEEecCccceeecc----CCc-CceeEeecc
Q 014774 190 VSIELPHLEQCKLDFYGLGNCSLS------VSCPKIQFLEVQGCSWIRVQE----TNC-LRNLSISNN 246 (419)
Q Consensus 190 ~~~~~~~l~~~~L~~l~~~~~~l~------~~~~~L~~L~l~~~~~~~l~~----~~~-L~~L~l~~~ 246 (419)
.... .-....+|+.+.+.++.+. ...++|+.|+++++.+..++. .+. |+.|+++++
T Consensus 321 p~~~-~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 321 PVET-SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp CCHH-HHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSS
T ss_pred Cchh-hhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCC
Confidence 1100 0011224555555544332 123566777777766544332 455 777777654
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.93 E-value=1e-09 Score=105.97 Aligned_cols=198 Identities=17% Similarity=0.120 Sum_probs=112.1
Q ss_pred ccCCCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccc
Q 014774 123 ISRAKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQC 200 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~ 200 (419)
+..+++|++|+|.++.....+ .+..+++|+.|+|+++.++... ...+..+++|++|+++++....-..-.+ ....
T Consensus 95 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~ 171 (452)
T 3zyi_A 95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLRELWLRNNPIESIPSYAF--NRVP 171 (452)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCCEEECCSCCCCEECTTTT--TTCT
T ss_pred cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCCEEECCCCCcceeCHhHH--hcCC
Confidence 445667777777665432221 3456677777777777644211 1123456777777777664321110000 1122
Q ss_pred eeeEecccCce--------eeecCCCccEEEecCccceeec---cCCcCceeEeecccceEE-EeccCCCCCcCEeeeCC
Q 014774 201 KLDFYGLGNCS--------LSVSCPKIQFLEVQGCSWIRVQ---ETNCLRNLSISNNAGRVY-MVDFGKLAALESLTLRG 268 (419)
Q Consensus 201 ~L~~l~~~~~~--------l~~~~~~L~~L~l~~~~~~~l~---~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~ 268 (419)
+|+.+.+.+|. ....+++|+.|+++++.+..++ ..++|+.|+++++.-... ...+.++++|+.|++++
T Consensus 172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 251 (452)
T 3zyi_A 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251 (452)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTT
T ss_pred cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCC
Confidence 44444444321 1134678999999888774443 367888898887521111 22456789999999944
Q ss_pred CCchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhh
Q 014774 269 VQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALC 334 (419)
Q Consensus 269 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~ 334 (419)
.... ......+..+++|+.|+++........ ...+..+++|+.|++++|.+.+-|
T Consensus 252 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 252 SQVS-LIERNAFDGLASLVELNLAHNNLSSLP----------HDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp SCCC-EECTTTTTTCTTCCEEECCSSCCSCCC----------TTSSTTCTTCCEEECCSSCEECST
T ss_pred CcCc-eECHHHhcCCCCCCEEECCCCcCCccC----------hHHhccccCCCEEEccCCCcCCCC
Confidence 2220 011123567899999999753222201 122456789999999988765444
No 51
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=1e-10 Score=120.66 Aligned_cols=68 Identities=10% Similarity=0.111 Sum_probs=32.4
Q ss_pred cCCCeeEEEecCchhHhhhhcccccccccccccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhhhh
Q 014774 316 NHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQM 391 (419)
Q Consensus 316 ~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~ 391 (419)
.+++|+.|++++|.+..+- ..-..+++|+.|+++++..+.+..+...++.-+..+++|+.|.+..+.+
T Consensus 751 ~l~~L~~L~Ls~N~L~~lp--------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSSFP--------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TCTTCCEEECCSSCCSSCC--------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred cCCCcCEEEeCCCCCCccc--------hhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 5667777777765443210 0011246666666655332222222222333345566666666655444
No 52
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.92 E-value=2.5e-09 Score=105.82 Aligned_cols=63 Identities=19% Similarity=0.229 Sum_probs=32.5
Q ss_pred ccCCCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCC
Q 014774 123 ISRAKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCE 185 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~ 185 (419)
++.+++|++|+++++.....+ .+..+++|+.|+++++.++.......+.++++|++|+++++.
T Consensus 70 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp TTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred ccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence 344556666666655433332 145566666666666654321111223456666666666554
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.92 E-value=2.3e-09 Score=98.18 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=31.3
Q ss_pred cccCCCCccEEEecC-c-cccCCc-ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCC
Q 014774 122 CISRAKNLESLKLWG-V-LMVSSP-KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCE 185 (419)
Q Consensus 122 ~l~~~~~L~~L~L~~-~-~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~ 185 (419)
.++.+++|++|++++ . .....+ .+..+++|+.|+++++.++.. +...+..+++|++|+++++.
T Consensus 71 ~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~ 136 (313)
T 1ogq_A 71 SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNA 136 (313)
T ss_dssp GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSE
T ss_pred hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCc
Confidence 344456666666653 2 211222 345566666666666654311 11123456666666666553
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.91 E-value=1.5e-09 Score=104.39 Aligned_cols=198 Identities=16% Similarity=0.150 Sum_probs=100.6
Q ss_pred ccCCCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccc
Q 014774 123 ISRAKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQC 200 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~ 200 (419)
+..+++|++|+|+++.....+ .+..+++|+.|+|+++.++... ...+..+++|++|+++++....-....+ ....
T Consensus 84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~ 160 (440)
T 3zyj_A 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNNPIESIPSYAF--NRIP 160 (440)
T ss_dssp TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCEEECCSCCCCEECTTTT--TTCT
T ss_pred hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCceeeCCCCcccccCHHHh--hhCc
Confidence 344556666666654332211 3445566666666666543211 0123455666666666553221110000 0112
Q ss_pred eeeEecccCce--------eeecCCCccEEEecCccceeec---cCCcCceeEeecccceEE-EeccCCCCCcCEeeeCC
Q 014774 201 KLDFYGLGNCS--------LSVSCPKIQFLEVQGCSWIRVQ---ETNCLRNLSISNNAGRVY-MVDFGKLAALESLTLRG 268 (419)
Q Consensus 201 ~L~~l~~~~~~--------l~~~~~~L~~L~l~~~~~~~l~---~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~ 268 (419)
+|+.+.+.++. ....+++|+.|+++++.+..++ ..++|+.|+++++.-... ...+.++++|+.|++.+
T Consensus 161 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 240 (440)
T 3zyj_A 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ 240 (440)
T ss_dssp TCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCC
Confidence 33333333221 1124577888888887664443 366788888876521111 12345678888888843
Q ss_pred CCchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhh
Q 014774 269 VQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALC 334 (419)
Q Consensus 269 ~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~ 334 (419)
.... ......+..+++|+.|+++........ ...+..+++|+.|++++|.+.+-|
T Consensus 241 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 241 SQIQ-VIERNAFDNLQSLVEINLAHNNLTLLP----------HDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CCCC-EECTTSSTTCTTCCEEECTTSCCCCCC----------TTTTSSCTTCCEEECCSSCEECSS
T ss_pred Ccee-EEChhhhcCCCCCCEEECCCCCCCccC----------hhHhccccCCCEEEcCCCCccCCC
Confidence 2210 011123556788888888652222201 122456788999999877664333
No 55
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.91 E-value=2.3e-09 Score=96.66 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=9.9
Q ss_pred hhcCCCeeEEEecCchhH
Q 014774 314 FNNHPKLQKFDIHGAMFA 331 (419)
Q Consensus 314 ~~~~~~L~~L~l~~~~~~ 331 (419)
+..+++|+.|++++|.+.
T Consensus 221 ~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 221 LAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp HTTCTTCCEEECCSSCEE
T ss_pred cccCcccCEEeccCCCcc
Confidence 344566666666655443
No 56
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.89 E-value=9.7e-09 Score=102.42 Aligned_cols=212 Identities=16% Similarity=0.084 Sum_probs=106.7
Q ss_pred CCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEe
Q 014774 126 AKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFY 205 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l 205 (419)
+++|+.|+|+++.....+. .+++|+.|++++|.++.- -...++|+.|+++++....-.. ...+|+.+
T Consensus 80 l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l-----~~~l~~L~~L~L~~N~l~~lp~------~l~~L~~L 146 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHL-----PALPSGLCKLWIFGNQLTSLPV------LPPGLQEL 146 (622)
T ss_dssp CTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCC-----CCCCTTCCEEECCSSCCSCCCC------CCTTCCEE
T ss_pred CCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCC-----CCCCCCcCEEECCCCCCCcCCC------CCCCCCEE
Confidence 4566666666654333222 456666666666654321 1145666666666553221110 01344455
Q ss_pred cccCcee---eecCCCccEEEecCccceeecc-CCcCceeEeecccceEEEecc-CCCCCcCEeeeCCCCchHHHHHHHh
Q 014774 206 GLGNCSL---SVSCPKIQFLEVQGCSWIRVQE-TNCLRNLSISNNAGRVYMVDF-GKLAALESLTLRGVQWCWDAISKML 280 (419)
Q Consensus 206 ~~~~~~l---~~~~~~L~~L~l~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~l~~l~ 280 (419)
+++++.+ ....++|+.|+++++.+..++. .++|+.|+++++.-. .+ ...++|+.|++.+... .. +.
T Consensus 147 ~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~----~l~~~~~~L~~L~L~~N~l--~~---l~ 217 (622)
T 3g06_A 147 SVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLA----SLPTLPSELYKLWAYNNRL--TS---LP 217 (622)
T ss_dssp ECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS----CCCCCCTTCCEEECCSSCC--SS---CC
T ss_pred ECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCC----CCCCccchhhEEECcCCcc--cc---cC
Confidence 4444432 1233456666666665544433 456666666553100 01 1245666666633221 11 12
Q ss_pred ccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeeccC
Q 014774 281 YWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRS 360 (419)
Q Consensus 281 ~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~ 360 (419)
...++|+.|+++...... +...+++|+.|++++|.+..+ +. .+++|+.|+++++.
T Consensus 218 ~~~~~L~~L~Ls~N~L~~--------------lp~~l~~L~~L~Ls~N~L~~l---------p~--~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 218 ALPSGLKELIVSGNRLTS--------------LPVLPSELKELMVSGNRLTSL---------PM--LPSGLLSLSVYRNQ 272 (622)
T ss_dssp CCCTTCCEEECCSSCCSC--------------CCCCCTTCCEEECCSSCCSCC---------CC--CCTTCCEEECCSSC
T ss_pred CCCCCCCEEEccCCccCc--------------CCCCCCcCcEEECCCCCCCcC---------Cc--ccccCcEEeCCCCC
Confidence 234667777775422211 113456777787777643322 11 35788888887653
Q ss_pred CCCchhhhhhHHhhhhcccchhhHHHHhhhh
Q 014774 361 PLNAEQKMSTLESLLKYGKNLKTMVIRILQM 391 (419)
Q Consensus 361 ~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~ 391 (419)
++. ++..+..+++|+.|.+..+.+
T Consensus 273 -L~~------lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 273 -LTR------LPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp -CCS------CCGGGGGSCTTCEEECCSCCC
T ss_pred -CCc------CCHHHhhccccCEEEecCCCC
Confidence 331 223356778888888876654
No 57
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.88 E-value=9e-09 Score=99.30 Aligned_cols=128 Identities=12% Similarity=0.116 Sum_probs=76.0
Q ss_pred CCCccEEEecCcccee-----eccCCcCceeEeecccceEE-EeccCCCCCcCEeeeCCCCchHHHHHHHhccCCcccEE
Q 014774 216 CPKIQFLEVQGCSWIR-----VQETNCLRNLSISNNAGRVY-MVDFGKLAALESLTLRGVQWCWDAISKMLYWASEVKHL 289 (419)
Q Consensus 216 ~~~L~~L~l~~~~~~~-----l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L 289 (419)
.++|+.|+++++.+.. +..+++|+.|+++++.-... ...+.++++|++|++++.... ......+..+++|++|
T Consensus 274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVL 352 (455)
T ss_dssp TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGGTTCTTCCEE
T ss_pred ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC-CcChhHhcCcccCCEE
Confidence 3678888888877633 23367888888877522111 113556888999999542220 1112345678899999
Q ss_pred EeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeeccCC
Q 014774 290 YMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRSP 361 (419)
Q Consensus 290 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~ 361 (419)
+++...... .. ...+..+++|+.|++++|.+..+-. ..+. .+++|+.|+++++.-
T Consensus 353 ~Ls~N~l~~---------~~-~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~------~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 353 DLSYNHIRA---------LG-DQSFLGLPNLKELALDTNQLKSVPD-GIFD------RLTSLQKIWLHTNPW 407 (455)
T ss_dssp ECCSSCCCE---------EC-TTTTTTCTTCCEEECCSSCCSCCCT-TTTT------TCTTCCEEECCSSCB
T ss_pred ECCCCcccc---------cC-hhhccccccccEEECCCCccccCCH-hHhc------cCCcccEEEccCCCc
Confidence 996522222 00 1123567889999998876643210 0111 258888888877653
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.88 E-value=2.7e-10 Score=110.91 Aligned_cols=213 Identities=19% Similarity=0.181 Sum_probs=138.5
Q ss_pred CCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceee
Q 014774 126 AKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLD 203 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~ 203 (419)
+++|++|+|+++.....+ .+..+++|+.|+|++|.+++..- +..+++|++|++++|... .
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~-~-------------- 94 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQ-E-------------- 94 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEE-E--------------
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCC-C--------------
Confidence 679999999987654433 46789999999999998543111 567899999999887321 1
Q ss_pred EecccCceeeecCCCccEEEecCccceeec--cCCcCceeEeecccce-EEEeccCCCCCcCEeeeCCCCchHHHHHHHh
Q 014774 204 FYGLGNCSLSVSCPKIQFLEVQGCSWIRVQ--ETNCLRNLSISNNAGR-VYMVDFGKLAALESLTLRGVQWCWDAISKML 280 (419)
Q Consensus 204 ~l~~~~~~l~~~~~~L~~L~l~~~~~~~l~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~ 280 (419)
+ ...++|+.|++++|.+..++ ..++|+.|+++++.-. .....++++++|+.|++++..........+.
T Consensus 95 --------l-~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 165 (487)
T 3oja_A 95 --------L-LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (487)
T ss_dssp --------E-EECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred --------C-CCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh
Confidence 1 22388999999988774333 3678999999875111 1112345689999999954322102233344
Q ss_pred ccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeeccC
Q 014774 281 YWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRS 360 (419)
Q Consensus 281 ~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~ 360 (419)
..+++|+.|+++....+... -...+++|+.|++++|.+..+-. .+ ..+++|+.|+++++.
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~------------~~~~l~~L~~L~Ls~N~l~~~~~--~~------~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 166 ASSDTLEHLNLQYNFIYDVK------------GQVVFAKLKTLDLSSNKLAFMGP--EF------QSAAGVTWISLRNNK 225 (487)
T ss_dssp GGTTTCCEEECTTSCCCEEE------------CCCCCTTCCEEECCSSCCCEECG--GG------GGGTTCSEEECTTSC
T ss_pred hhCCcccEEecCCCcccccc------------ccccCCCCCEEECCCCCCCCCCH--hH------cCCCCccEEEecCCc
Confidence 57899999999652222201 01247899999999876542200 11 135899999998754
Q ss_pred CCCchhhhhhHHhhhhcccchhhHHHHhhhhc
Q 014774 361 PLNAEQKMSTLESLLKYGKNLKTMVIRILQMK 392 (419)
Q Consensus 361 ~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~~ 392 (419)
++. ++..+..+++|+.|.+..+.+.
T Consensus 226 -l~~------lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 226 -LVL------IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp -CCE------ECTTCCCCTTCCEEECTTCCBC
T ss_pred -Ccc------cchhhccCCCCCEEEcCCCCCc
Confidence 332 2333567889999988766543
No 59
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.87 E-value=3.4e-09 Score=106.71 Aligned_cols=190 Identities=11% Similarity=0.075 Sum_probs=104.7
Q ss_pred cccCCCCccEEEecCcccc-CCcccccCCCccEEEecCeeeChHHHHHHHhcCCC-CcEEEccCCCCccccccccccccc
Q 014774 122 CISRAKNLESLKLWGVLMV-SSPKWDVFHKLQNLEIVGARLEDPALSTALRACPN-LTNLLLLGCEGVRSVSIELPHLEQ 199 (419)
Q Consensus 122 ~l~~~~~L~~L~L~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~-L~~L~l~~c~~~~~~~~~~~~l~~ 199 (419)
.++.+++|+.|++.++... ..+.+..+++|+.|+++++.++ .+..-+..+++ |++|+++++... ...-.......
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l 401 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV 401 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCS
T ss_pred hhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCc-ccchhhhhccc
Confidence 3556778888888776543 4445566778888888888755 22222566777 888888877543 21111111112
Q ss_pred ceeeEecccCceeee--------------cCCCccEEEecCccceeecc-----CCcCceeEeecccceEEEec------
Q 014774 200 CKLDFYGLGNCSLSV--------------SCPKIQFLEVQGCSWIRVQE-----TNCLRNLSISNNAGRVYMVD------ 254 (419)
Q Consensus 200 ~~L~~l~~~~~~l~~--------------~~~~L~~L~l~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~------ 254 (419)
.+|+.+.+.++.+.. ..++|+.|+++++.+..++. +++|+.|+++++.-......
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~ 481 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence 256666666553211 34578888888776644442 56777787776411100000
Q ss_pred --cCCCCCcCEeeeCCCCchHHHHHHHhc--cCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecC
Q 014774 255 --FGKLAALESLTLRGVQWCWDAISKMLY--WASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHG 327 (419)
Q Consensus 255 --~~~~~~L~~L~l~~~~~~~~~l~~l~~--~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 327 (419)
..++++|+.|++++... ..+...+. .+++|+.|+++...... + ...+..+++|+.|++++
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l--~~lp~~~~~~~l~~L~~L~Ls~N~l~~---i--------p~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKL--TKLSDDFRATTLPYLVGIDLSYNSFSK---F--------PTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp EECTTGGGCCEEECCSSCC--CBCCGGGSTTTCTTCCEEECCSSCCSS---C--------CCGGGGCSSCCEEECCS
T ss_pred ccccccCCccEEECcCCcC--CccChhhhhccCCCcCEEECCCCCCCC---c--------ChhhhcCCCCCEEECCC
Confidence 11223788888843222 12222232 67788888875422211 0 11134567778777754
No 60
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.87 E-value=3.2e-09 Score=105.42 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=26.5
Q ss_pred ccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhhhhc
Q 014774 347 VIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQMK 392 (419)
Q Consensus 347 ~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~~ 392 (419)
.+++|+.|+++++. ++. .....+..+++|+.|.+..+.+.
T Consensus 471 ~l~~L~~L~L~~N~-l~~-----l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 471 HLQALQELNVASNQ-LKS-----VPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp SSCCCSEEECCSSC-CCC-----CCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCCCCEEECCCCC-CCC-----CCHHHHhcCCCCCEEEecCCCcC
Confidence 46788888887653 332 11113567888999988877765
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.86 E-value=3.7e-09 Score=95.34 Aligned_cols=199 Identities=17% Similarity=0.188 Sum_probs=117.2
Q ss_pred CCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceee
Q 014774 126 AKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLD 203 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~ 203 (419)
.++|++|+++++.....+ .+..+++|+.|+++++.++... ...+..+++|++|+++++..++......
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~--------- 100 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPAT--------- 100 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTT---------
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHH---------
Confidence 568999999886543333 3577889999999988754321 1224678899999998886443321110
Q ss_pred EecccCceeeecCCCccEEEecCccceee-----ccCCcCceeEeecccceEEEe-ccCCCCCcCEeeeCCCCchHHHH-
Q 014774 204 FYGLGNCSLSVSCPKIQFLEVQGCSWIRV-----QETNCLRNLSISNNAGRVYMV-DFGKLAALESLTLRGVQWCWDAI- 276 (419)
Q Consensus 204 ~l~~~~~~l~~~~~~L~~L~l~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~l- 276 (419)
...+++|+.|+++++.+..+ ...++|+.|+++++.-..... .+..+++|++|++++... ..+
T Consensus 101 ---------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~ 169 (285)
T 1ozn_A 101 ---------FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI--SSVP 169 (285)
T ss_dssp ---------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CEEC
T ss_pred ---------hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc--cccC
Confidence 12346677777776655322 235677777776641111111 245678899999854222 111
Q ss_pred HHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceee
Q 014774 277 SKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVV 356 (419)
Q Consensus 277 ~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l 356 (419)
...+..+++|++|++......+ .. ...+..+++|+.|+++++.+..+-. ..+ ..+++|+.|++
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~---------~~-~~~~~~l~~L~~L~l~~n~l~~~~~-~~~------~~l~~L~~L~l 232 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAH---------VH-PHAFRDLGRLMTLYLFANNLSALPT-EAL------APLRALQYLRL 232 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCE---------EC-TTTTTTCTTCCEEECCSSCCSCCCH-HHH------TTCTTCCEEEC
T ss_pred HHHhcCccccCEEECCCCcccc---------cC-HhHccCcccccEeeCCCCcCCcCCH-HHc------ccCcccCEEec
Confidence 1235568899999996522222 00 1224567899999999876532200 001 12588999999
Q ss_pred eccCCC
Q 014774 357 TVRSPL 362 (419)
Q Consensus 357 ~~~~~~ 362 (419)
++..-.
T Consensus 233 ~~N~~~ 238 (285)
T 1ozn_A 233 NDNPWV 238 (285)
T ss_dssp CSSCEE
T ss_pred cCCCcc
Confidence 876543
No 62
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.86 E-value=2e-09 Score=99.39 Aligned_cols=242 Identities=14% Similarity=0.097 Sum_probs=138.5
Q ss_pred CCceEEEEEecCccccccccCCCcccccccCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCC
Q 014774 95 STLKHLELRMDNLADYQGCLENPSKLDCISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACP 174 (419)
Q Consensus 95 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 174 (419)
+.|+.|+++..... ......+..+++|++|+++++.....+.. .+++|+.|+++++.++... ...+..++
T Consensus 78 ~~L~~L~L~~n~l~--------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~~~L~~L~l~~n~i~~~~-~~~~~~l~ 147 (332)
T 2ft3_A 78 QHLYALVLVNNKIS--------KIHEKAFSPLRKLQKLYISKNHLVEIPPN-LPSSLVELRIHDNRIRKVP-KGVFSGLR 147 (332)
T ss_dssp TTCCEEECCSSCCC--------EECGGGSTTCTTCCEEECCSSCCCSCCSS-CCTTCCEEECCSSCCCCCC-SGGGSSCS
T ss_pred CCCcEEECCCCccC--------ccCHhHhhCcCCCCEEECCCCcCCccCcc-ccccCCEEECCCCccCccC-HhHhCCCc
Confidence 56777776633221 11123456688999999988765443322 2388999999998855321 12356799
Q ss_pred CCcEEEccCCCCcccccccccccccceeeEecccCceeee----cCCCccEEEecCcccee-----eccCCcCceeEeec
Q 014774 175 NLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSLSV----SCPKIQFLEVQGCSWIR-----VQETNCLRNLSISN 245 (419)
Q Consensus 175 ~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l~~----~~~~L~~L~l~~~~~~~-----l~~~~~L~~L~l~~ 245 (419)
+|++|++.++.... .++........+|+.+++.++.+.. ..++|+.|+++++.+.. +..+++|+.|++++
T Consensus 148 ~L~~L~l~~n~l~~-~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~ 226 (332)
T 2ft3_A 148 NMNCIEMGGNPLEN-SGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226 (332)
T ss_dssp SCCEEECCSCCCBG-GGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCS
T ss_pred cCCEEECCCCcccc-CCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence 99999999875432 1111111222256666666554211 12689999999887633 33478899999987
Q ss_pred ccce-EEEeccCCCCCcCEeeeCCCCchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEE
Q 014774 246 NAGR-VYMVDFGKLAALESLTLRGVQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFD 324 (419)
Q Consensus 246 ~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 324 (419)
+.-. .....+..+++|+.|++++... ..+...+..+++|+.|+++....+. -+...+... ......++|+.++
T Consensus 227 N~l~~~~~~~~~~l~~L~~L~L~~N~l--~~lp~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~---~~~~~~~~l~~L~ 300 (332)
T 2ft3_A 227 NQIRMIENGSLSFLPTLRELHLDNNKL--SRVPAGLPDLKLLQVVYLHTNNITK-VGVNDFCPV---GFGVKRAYYNGIS 300 (332)
T ss_dssp SCCCCCCTTGGGGCTTCCEEECCSSCC--CBCCTTGGGCTTCCEEECCSSCCCB-CCTTSSSCS---SCCSSSCCBSEEE
T ss_pred CcCCcCChhHhhCCCCCCEEECCCCcC--eecChhhhcCccCCEEECCCCCCCc-cChhHcccc---ccccccccccceE
Confidence 5211 1111345689999999954332 2222336678999999997532322 111111110 0112257899999
Q ss_pred ecCchhHhhh-hcccccccccccccccccceeeecc
Q 014774 325 IHGAMFAALC-QKNSLKNVESGFVIPCLEEVVVTVR 359 (419)
Q Consensus 325 l~~~~~~~l~-~~~~l~~l~~~~~~p~L~~l~l~~~ 359 (419)
+.++...... ....+ ..+++|+.++++++
T Consensus 301 l~~N~~~~~~~~~~~~------~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 301 LFNNPVPYWEVQPATF------RCVTDRLAIQFGNY 330 (332)
T ss_dssp CCSSSSCGGGSCGGGG------TTBCCSTTEEC---
T ss_pred eecCcccccccCcccc------cccchhhhhhcccc
Confidence 9988654211 00011 12578888887654
No 63
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.86 E-value=6.3e-09 Score=100.36 Aligned_cols=246 Identities=15% Similarity=0.110 Sum_probs=154.1
Q ss_pred CCceEEEEEecCccccccccCCCcccccccCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCC
Q 014774 95 STLKHLELRMDNLADYQGCLENPSKLDCISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACP 174 (419)
Q Consensus 95 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 174 (419)
+.|+.|+++..... .+..++.+++|++|+++++..... .+..+++|+.|+++++.++... +..++
T Consensus 42 ~~L~~L~Ls~n~l~----------~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~l~~~~----~~~l~ 106 (457)
T 3bz5_A 42 ATLTSLDCHNSSIT----------DMTGIEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTNLD----VTPLT 106 (457)
T ss_dssp TTCCEEECCSSCCC----------CCTTGGGCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCC----CTTCT
T ss_pred CCCCEEEccCCCcc----------cChhhcccCCCCEEEccCCcCCeE-ccccCCCCCEEECcCCCCceee----cCCCC
Confidence 78888887744322 123466689999999998765443 3678899999999999876542 56899
Q ss_pred CCcEEEccCCCCcccccccccccccceeeEecccCcee----eecCCCccEEEecCccc---eeeccCCcCceeEeeccc
Q 014774 175 NLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSL----SVSCPKIQFLEVQGCSW---IRVQETNCLRNLSISNNA 247 (419)
Q Consensus 175 ~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l----~~~~~~L~~L~l~~~~~---~~l~~~~~L~~L~l~~~~ 247 (419)
+|++|+++++...+ ..+ ....+|+.+.+.++.+ ...+++|+.|+++++.. ..+...++|+.|+++++.
T Consensus 107 ~L~~L~L~~N~l~~-l~~----~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LDV----SQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp TCCEEECCSSCCSC-CCC----TTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSC
T ss_pred cCCEEECCCCcCCe-ecC----CCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCc
Confidence 99999999885432 211 1223566666555432 13467888898888743 233447888888888751
Q ss_pred ceEEEeccCCCCCcCEeeeCCCCchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecC
Q 014774 248 GRVYMVDFGKLAALESLTLRGVQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHG 327 (419)
Q Consensus 248 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~ 327 (419)
.....++.+++|+.|++++... ..+ -+..+++|+.|+++...... +. +..+++|+.|++++
T Consensus 182 --l~~l~l~~l~~L~~L~l~~N~l--~~~--~l~~l~~L~~L~Ls~N~l~~---------ip----~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 182 --ITELDVSQNKLLNRLNCDTNNI--TKL--DLNQNIQLTFLDCSSNKLTE---------ID----VTPLTQLTYFDCSV 242 (457)
T ss_dssp --CCCCCCTTCTTCCEEECCSSCC--SCC--CCTTCTTCSEEECCSSCCSC---------CC----CTTCTTCSEEECCS
T ss_pred --cceeccccCCCCCEEECcCCcC--Cee--ccccCCCCCEEECcCCcccc---------cC----ccccCCCCEEEeeC
Confidence 1112366788899998843222 111 15567899999886532322 11 35678999999998
Q ss_pred chhHhh--hhcccccccccccccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhh
Q 014774 328 AMFAAL--CQKNSLKNVESGFVIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRIL 389 (419)
Q Consensus 328 ~~~~~l--~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~ 389 (419)
+.+..+ .....++.+... ..+|+.++++.+..... +. ...|++|+.|.+..+
T Consensus 243 N~l~~~~~~~l~~L~~L~l~--~n~L~~L~l~~n~~~~~------~~--~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 243 NPLTELDVSTLSKLTTLHCI--QTDLLEIDLTHNTQLIY------FQ--AEGCRKIKELDVTHN 296 (457)
T ss_dssp SCCSCCCCTTCTTCCEEECT--TCCCSCCCCTTCTTCCE------EE--CTTCTTCCCCCCTTC
T ss_pred CcCCCcCHHHCCCCCEEecc--CCCCCEEECCCCccCCc------cc--ccccccCCEEECCCC
Confidence 765422 111123322222 24667777766653332 11 356788888887654
No 64
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.85 E-value=1.2e-09 Score=102.10 Aligned_cols=186 Identities=16% Similarity=0.090 Sum_probs=89.9
Q ss_pred ccCCC-CccEEEecCccccCCc--cccc-----CCCccEEEecCeeeChH---HHHHHHhcC-CCCcEEEccCCCCcccc
Q 014774 123 ISRAK-NLESLKLWGVLMVSSP--KWDV-----FHKLQNLEIVGARLEDP---ALSTALRAC-PNLTNLLLLGCEGVRSV 190 (419)
Q Consensus 123 l~~~~-~L~~L~L~~~~~~~~~--~~~~-----~~~L~~L~L~~~~~~~~---~l~~l~~~~-p~L~~L~l~~c~~~~~~ 190 (419)
+..++ +|++|+|+++...... .+.. +++|+.|+|++|.+++. .+...+..+ ++|++|++++|.. ++.
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~ 124 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSK 124 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-GGS
T ss_pred HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC-CcH
Confidence 33344 5666666665433222 1111 26666666666664432 233333344 5666666665542 222
Q ss_pred cccccccccceeeEecccCceeeec-CCCccEEEecCccce-----ee----ccC-CcCceeEeecccc-eEEEe----c
Q 014774 191 SIELPHLEQCKLDFYGLGNCSLSVS-CPKIQFLEVQGCSWI-----RV----QET-NCLRNLSISNNAG-RVYMV----D 254 (419)
Q Consensus 191 ~~~~~~l~~~~L~~l~~~~~~l~~~-~~~L~~L~l~~~~~~-----~l----~~~-~~L~~L~l~~~~~-~~~~~----~ 254 (419)
+..... ..... ..+|+.|++++|.+. .+ ... ++|+.|+++++.- ..... .
T Consensus 125 ~~~~l~--------------~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 190 (362)
T 3goz_A 125 SSSEFK--------------QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF 190 (362)
T ss_dssp CHHHHH--------------HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred HHHHHH--------------HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHH
Confidence 111100 00011 357888888877652 11 122 3788888776511 00000 1
Q ss_pred cCCC-CCcCEeeeCCCC--c-hHHHHHHHhcc-CCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCch
Q 014774 255 FGKL-AALESLTLRGVQ--W-CWDAISKMLYW-ASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAM 329 (419)
Q Consensus 255 ~~~~-~~L~~L~l~~~~--~-~~~~l~~l~~~-~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 329 (419)
+..+ ++|++|++++.. + ....+...+.. .++|++|+++....++ .+. ..+..+....++|+.|++++|.
T Consensus 191 l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~-----~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 191 LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG-PSL-----ENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC-CCH-----HHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc-HHH-----HHHHHHHhcCCCccEEEeccCC
Confidence 1233 478888884322 2 11223443443 4578888886543433 111 1123344566778888888776
No 65
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.82 E-value=7e-09 Score=93.83 Aligned_cols=59 Identities=22% Similarity=0.173 Sum_probs=28.8
Q ss_pred ccCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCC
Q 014774 123 ISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGC 184 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c 184 (419)
+..+++|+.|+++++.....+.+..+++|+.|+++++.+++- .. +..+++|++|++++|
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSLEHN 122 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEECTTS
T ss_pred HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEECCCC
Confidence 333555555555554433332344555555555555554331 11 344555555555554
No 66
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.82 E-value=3.3e-09 Score=110.40 Aligned_cols=63 Identities=24% Similarity=0.209 Sum_probs=29.5
Q ss_pred ccCCCCccEEEecCccccCC-c-ccccCCCccEEEecCeeeChHHHH-HHHhcCCCCcEEEccCCC
Q 014774 123 ISRAKNLESLKLWGVLMVSS-P-KWDVFHKLQNLEIVGARLEDPALS-TALRACPNLTNLLLLGCE 185 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~-~-~~~~~~~L~~L~L~~~~~~~~~l~-~l~~~~p~L~~L~l~~c~ 185 (419)
+..+++|+.|+|+++..... + .+..+++|+.|+|++|.+++.... ..+..+++|++|+++++.
T Consensus 69 f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 69 FRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp TSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred hcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc
Confidence 33455555555555432211 1 334555566666655554321111 113345556666655553
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.81 E-value=3e-10 Score=104.02 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=88.3
Q ss_pred CCccEEEecCccceee-----ccCCcCceeEeeccc--ce---EEEeccCCCCCcCEeeeCC--CCchHHHHHHHhccCC
Q 014774 217 PKIQFLEVQGCSWIRV-----QETNCLRNLSISNNA--GR---VYMVDFGKLAALESLTLRG--VQWCWDAISKMLYWAS 284 (419)
Q Consensus 217 ~~L~~L~l~~~~~~~l-----~~~~~L~~L~l~~~~--~~---~~~~~~~~~~~L~~L~l~~--~~~~~~~l~~l~~~~~ 284 (419)
++|+.|+++++.+..+ ...++|+.|+++++. +. ......+.+++|++|++++ ++........+...++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 7888888888766333 336788888887752 11 0011125688899998854 3321122334556778
Q ss_pred cccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeeccCCCCc
Q 014774 285 EVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRSPLNA 364 (419)
Q Consensus 285 ~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~ 364 (419)
+|++|+++.....+.. + .......++|+.|++++|.+..+ +.... ++|+.|+++++. +++
T Consensus 229 ~L~~L~Ls~N~l~~~~---~------~~~~~~l~~L~~L~Ls~N~l~~i---------p~~~~-~~L~~L~Ls~N~-l~~ 288 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAA---G------APSCDWPSQLNSLNLSFTGLKQV---------PKGLP-AKLSVLDLSYNR-LDR 288 (312)
T ss_dssp CCSEEECTTSCCCSSC---C------CSCCCCCTTCCEEECTTSCCSSC---------CSSCC-SEEEEEECCSSC-CCS
T ss_pred CCCEEECCCCcCCccc---c------hhhhhhcCCCCEEECCCCccChh---------hhhcc-CCceEEECCCCC-CCC
Confidence 8999998652222201 0 01123457899999987654322 22222 789999998753 443
Q ss_pred hhhhhhHHhhhhcccchhhHHHHhhhhc
Q 014774 365 EQKMSTLESLLKYGKNLKTMVIRILQMK 392 (419)
Q Consensus 365 ~~~~~~l~~ll~~~~~L~~L~i~~~~~~ 392 (419)
++. +..+++|+.|.+..+.+.
T Consensus 289 ------~p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 289 ------NPS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp ------CCC-TTTSCEEEEEECTTCTTT
T ss_pred ------Chh-HhhCCCCCEEeccCCCCC
Confidence 122 567889998888776554
No 68
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.81 E-value=5.2e-09 Score=97.85 Aligned_cols=243 Identities=14% Similarity=0.143 Sum_probs=134.7
Q ss_pred HHHHHHhCCCcceEEEec-CCCcchHHHHHHH--hcC-CceEEEEEecCccccccccCCCccc-ccccC-CCCccEEEec
Q 014774 62 VLKMIYSIVCLEELVVYT-PFSKAGLDSWLML--AGS-TLKHLELRMDNLADYQGCLENPSKL-DCISR-AKNLESLKLW 135 (419)
Q Consensus 62 ~~~~l~~~~~L~~l~l~~-~~~~~~~~~w~~~--~~~-~L~~L~l~~~~~~~~~~~~~~~~~l-~~l~~-~~~L~~L~L~ 135 (419)
+...+....+|+.|+++. ............. ..+ +|+.|+++....+. .....+ ..+.. +++|++|+|+
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-----~~~~~l~~~l~~~~~~L~~L~Ls 88 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF-----KNSDELVQILAAIPANVTSLNLS 88 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG-----SCHHHHHHHHHTSCTTCCEEECC
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH-----HHHHHHHHHHhccCCCccEEECc
Confidence 344444566799999943 4333222222111 234 79999887544321 111111 12223 3899999999
Q ss_pred CccccCCc-c-----cccC-CCccEEEecCeeeChHHHHHH---Hhc-CCCCcEEEccCCCCcccccccccccccceeeE
Q 014774 136 GVLMVSSP-K-----WDVF-HKLQNLEIVGARLEDPALSTA---LRA-CPNLTNLLLLGCEGVRSVSIELPHLEQCKLDF 204 (419)
Q Consensus 136 ~~~~~~~~-~-----~~~~-~~L~~L~L~~~~~~~~~l~~l---~~~-~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~ 204 (419)
++...... . +..+ ++|+.|++++|.+++.....+ +.. +++|++|++++|.. ++.+.....
T Consensus 89 ~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~-------- 159 (362)
T 3goz_A 89 GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL-GIKSSDELI-------- 159 (362)
T ss_dssp SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG-GGSCHHHHH--------
T ss_pred CCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC-CHHHHHHHH--------
Confidence 98754433 1 2444 899999999999776554443 444 57999999998853 333222110
Q ss_pred ecccCceeeecC-CCccEEEecCcccee---------eccC-CcCceeEeeccc--c--eE-EEeccCC-CCCcCEeeeC
Q 014774 205 YGLGNCSLSVSC-PKIQFLEVQGCSWIR---------VQET-NCLRNLSISNNA--G--RV-YMVDFGK-LAALESLTLR 267 (419)
Q Consensus 205 l~~~~~~l~~~~-~~L~~L~l~~~~~~~---------l~~~-~~L~~L~l~~~~--~--~~-~~~~~~~-~~~L~~L~l~ 267 (419)
...... ++|+.|++++|.+.. +... ++|+.|+++++. + .. ....+.. .++|++|+++
T Consensus 160 ------~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls 233 (362)
T 3goz_A 160 ------QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLC 233 (362)
T ss_dssp ------HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECC
T ss_pred ------HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECc
Confidence 000122 367777777765521 1123 477777777651 1 00 0001222 4689999994
Q ss_pred C--CCc-hHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHH---hhcCCCeeEEEecCchh
Q 014774 268 G--VQW-CWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEF---FNNHPKLQKFDIHGAMF 330 (419)
Q Consensus 268 ~--~~~-~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~ 330 (419)
+ +++ ....+..+...+++|+.|+++.....+.. ......+ +...++|+.|+++++.+
T Consensus 234 ~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~------~~~~~~l~~~~~~l~~L~~LdL~~N~l 296 (362)
T 3goz_A 234 LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMS------KEQCKALGAAFPNIQKIILVDKNGKEI 296 (362)
T ss_dssp SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCC------HHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccC------HHHHHHHHHHhccCCceEEEecCCCcC
Confidence 3 333 11345666788899999999763322200 0112222 33456777788887654
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.79 E-value=5.8e-09 Score=95.63 Aligned_cols=213 Identities=19% Similarity=0.184 Sum_probs=134.4
Q ss_pred CCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceee
Q 014774 126 AKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLD 203 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~ 203 (419)
+++|++|+++++.....+ .+..+++|+.|+++++.+++.. . +..+++|++|+++++... .
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~l~-~-------------- 94 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNYVQ-E-------------- 94 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSEEE-E--------------
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCccc-c--------------
Confidence 678888888887554433 3567888888888888744211 1 467788888888776321 1
Q ss_pred EecccCceeeecCCCccEEEecCccceeec--cCCcCceeEeecccce-EEEeccCCCCCcCEeeeCCCCchHHHHHHHh
Q 014774 204 FYGLGNCSLSVSCPKIQFLEVQGCSWIRVQ--ETNCLRNLSISNNAGR-VYMVDFGKLAALESLTLRGVQWCWDAISKML 280 (419)
Q Consensus 204 ~l~~~~~~l~~~~~~L~~L~l~~~~~~~l~--~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~ 280 (419)
....++|+.|+++++.+..++ ..++|+.|+++++.-. .....++.+++|+.|++++..........+.
T Consensus 95 ---------l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 165 (317)
T 3o53_A 95 ---------LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (317)
T ss_dssp ---------EEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred ---------ccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh
Confidence 123488899999888773332 3678999999875211 1112345578999999954322102223344
Q ss_pred ccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeeccC
Q 014774 281 YWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRS 360 (419)
Q Consensus 281 ~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~ 360 (419)
..+++|++|+++........+ ...+++|+.|++++|.+..+-. .+ ..+++|+.|+++++.
T Consensus 166 ~~l~~L~~L~L~~N~l~~~~~------------~~~l~~L~~L~Ls~N~l~~l~~--~~------~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 166 ASSDTLEHLNLQYNFIYDVKG------------QVVFAKLKTLDLSSNKLAFMGP--EF------QSAAGVTWISLRNNK 225 (317)
T ss_dssp GGTTTCCEEECTTSCCCEEEC------------CCCCTTCCEEECCSSCCCEECG--GG------GGGTTCSEEECTTSC
T ss_pred hccCcCCEEECCCCcCccccc------------ccccccCCEEECCCCcCCcchh--hh------cccCcccEEECcCCc
Confidence 568999999996522222010 1236899999999876542200 01 135899999998763
Q ss_pred CCCchhhhhhHHhhhhcccchhhHHHHhhhhc
Q 014774 361 PLNAEQKMSTLESLLKYGKNLKTMVIRILQMK 392 (419)
Q Consensus 361 ~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~~ 392 (419)
++. +...+..+++|+.|.+..+.+.
T Consensus 226 -l~~------l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 226 -LVL------IEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp -CCE------ECTTCCCCTTCCEEECTTCCCB
T ss_pred -ccc------hhhHhhcCCCCCEEEccCCCcc
Confidence 432 2333577899999999877654
No 70
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.79 E-value=3.7e-09 Score=68.65 Aligned_cols=35 Identities=31% Similarity=0.450 Sum_probs=33.1
Q ss_pred CCCCcHHHHHHHHhCCCCHHHHHHhhccchhHHHhh
Q 014774 1 MDSLPDAIVQYILSHMKNARDVALCNCVSKRWKESI 36 (419)
Q Consensus 1 ~~~LPd~ll~~I~~~L~~~~~~~~~~~vsk~w~~~~ 36 (419)
++.||+|++.+||+||+ .++++++++|||+|+.+.
T Consensus 9 ~~~LP~eil~~I~~~L~-~~dl~~~~~Vck~w~~~~ 43 (53)
T 1fs1_A 9 WDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLA 43 (53)
T ss_dssp CCSSCHHHHHHHHTTSC-GGGHHHHHTTCHHHHHHH
T ss_pred HHHCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHh
Confidence 57899999999999999 999999999999999976
No 71
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.78 E-value=3.9e-09 Score=86.53 Aligned_cols=88 Identities=14% Similarity=0.185 Sum_probs=62.8
Q ss_pred CceEEEEEecCccccccccCCCcccccccCCCCccEEEecCccccCCccc---cc----CCCccEEEecCee-eChHHHH
Q 014774 96 TLKHLELRMDNLADYQGCLENPSKLDCISRAKNLESLKLWGVLMVSSPKW---DV----FHKLQNLEIVGAR-LEDPALS 167 (419)
Q Consensus 96 ~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~~~~---~~----~~~L~~L~L~~~~-~~~~~l~ 167 (419)
.|+.|+++... .++.++..+..|++|++|+|++|..+++.+. .. +++|+.|+|++|. +||.++.
T Consensus 62 ~L~~LDLs~~~--------Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 62 KIQAIDATDSC--------IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CEEEEEEESCC--------CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred eEeEEeCcCCC--------ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 46666666332 3466677776788888888888877777643 22 3568888888887 8888887
Q ss_pred HHHhcCCCCcEEEccCCCCcccccc
Q 014774 168 TALRACPNLTNLLLLGCEGVRSVSI 192 (419)
Q Consensus 168 ~l~~~~p~L~~L~l~~c~~~~~~~~ 192 (419)
.+. +||+|++|++++|+.+++.++
T Consensus 134 ~L~-~~~~L~~L~L~~c~~Itd~gl 157 (176)
T 3e4g_A 134 ALH-HFRNLKYLFLSDLPGVKEKEK 157 (176)
T ss_dssp HGG-GCTTCCEEEEESCTTCCCHHH
T ss_pred HHh-cCCCCCEEECCCCCCCCchHH
Confidence 764 688888888888888877543
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.78 E-value=7.8e-09 Score=92.57 Aligned_cols=65 Identities=18% Similarity=0.129 Sum_probs=33.8
Q ss_pred CCCCCcCEeeeCCCCchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhH
Q 014774 256 GKLAALESLTLRGVQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFA 331 (419)
Q Consensus 256 ~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 331 (419)
+.+++|+.|++++.... ......+..+++|++|++......... ...+..+++|+.|++++|.+.
T Consensus 154 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 154 DKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVP----------DGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp TTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCSSCBC
T ss_pred ccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcCCccC----------HHHHhCCcCCCEEEccCCCcc
Confidence 44667777777332110 011123456777888887542222200 122355678888888776543
No 73
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.76 E-value=5.9e-09 Score=95.39 Aligned_cols=244 Identities=13% Similarity=0.057 Sum_probs=141.4
Q ss_pred CCcceEEEec-CCCc-chHHHHHHHhcCCceEEEEEe-cCccccccccCCCcccccccCCCCccEEEecCcccc-CCc-c
Q 014774 70 VCLEELVVYT-PFSK-AGLDSWLMLAGSTLKHLELRM-DNLADYQGCLENPSKLDCISRAKNLESLKLWGVLMV-SSP-K 144 (419)
Q Consensus 70 ~~L~~l~l~~-~~~~-~~~~~w~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~-~~~-~ 144 (419)
.+++.++++. .... ..++..+. ..+.|+.|+++. .... ......++.+++|++|+++++... ..+ .
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~-~l~~L~~L~L~~~n~l~--------~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLV--------GPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGG-GCTTCSEEEEEEETTEE--------SCCCGGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred ceEEEEECCCCCccCCcccChhHh-CCCCCCeeeCCCCCccc--------ccCChhHhcCCCCCEEECcCCeeCCcCCHH
Confidence 4678888844 2221 01111111 247889998873 3322 111234666899999999887653 333 4
Q ss_pred cccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEecccCceeeecCC-CccEEE
Q 014774 145 WDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSLSVSCP-KIQFLE 223 (419)
Q Consensus 145 ~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l~~~~~-~L~~L~ 223 (419)
+..+++|+.|+++++.++.. +...+..+++|++|+++++...+..... + ...+ .|+.|+
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~------------------l-~~l~~~L~~L~ 180 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPDS------------------Y-GSFSKLFTSMT 180 (313)
T ss_dssp GGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCGG------------------G-GCCCTTCCEEE
T ss_pred HhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcCCHH------------------H-hhhhhcCcEEE
Confidence 68899999999999986531 1223567999999999988643221000 0 1223 667777
Q ss_pred ecCccce-eec----cCCcCceeEeecccce-EEEeccCCCCCcCEeeeCCCCchHHHHHHHhccCCcccEEEeeeeecC
Q 014774 224 VQGCSWI-RVQ----ETNCLRNLSISNNAGR-VYMVDFGKLAALESLTLRGVQWCWDAISKMLYWASEVKHLYMKVEFTG 297 (419)
Q Consensus 224 l~~~~~~-~l~----~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~ 297 (419)
++++.+. .++ ... |+.|+++++.-. .....+..+++|+.|++++... ......+..+++|++|+++.....
T Consensus 181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL--AFDLGKVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE--CCBGGGCCCCTTCCEEECCSSCCE
T ss_pred CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce--eeecCcccccCCCCEEECcCCccc
Confidence 7766553 122 233 777777764111 1112345688999999954222 111111556789999999652222
Q ss_pred CCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeeccCCCC
Q 014774 298 DFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRSPLN 363 (419)
Q Consensus 298 ~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~ 363 (419)
+ . ....+..+++|+.|++++|.+...-. .. ..+++|+.+++.+...+.
T Consensus 258 ~-~---------~p~~l~~l~~L~~L~Ls~N~l~~~ip--~~------~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 258 G-T---------LPQGLTQLKFLHSLNVSFNNLCGEIP--QG------GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp E-C---------CCGGGGGCTTCCEEECCSSEEEEECC--CS------TTGGGSCGGGTCSSSEEE
T ss_pred C-c---------CChHHhcCcCCCEEECcCCcccccCC--CC------ccccccChHHhcCCCCcc
Confidence 1 0 12234678999999999887642101 11 124788888887655443
No 74
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.75 E-value=1.2e-08 Score=101.48 Aligned_cols=144 Identities=18% Similarity=0.135 Sum_probs=83.9
Q ss_pred cccCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccce
Q 014774 122 CISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCK 201 (419)
Q Consensus 122 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~ 201 (419)
.+..+++|+.|+|+++.....+.+..+++|+.|+|++|.+++.. .+..+++|+.|++++|.......
T Consensus 60 ~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~l~~l~~---------- 126 (605)
T 1m9s_A 60 GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNGISDING---------- 126 (605)
T ss_dssp TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT---TSTTCTTCCEEECTTSCCCCCGG----------
T ss_pred HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh---hhccCCCCCEEEecCCCCCCCcc----------
Confidence 45557777777777765444444667777777777777755421 24567777777777664322110
Q ss_pred eeEecccCceeeecCCCccEEEecCccceee---ccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHHHHH
Q 014774 202 LDFYGLGNCSLSVSCPKIQFLEVQGCSWIRV---QETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDAISK 278 (419)
Q Consensus 202 L~~l~~~~~~l~~~~~~L~~L~l~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~ 278 (419)
...+++|+.|++++|.+..+ ..+++|+.|+++++.-. ....+..+++|+.|++++... ..+.
T Consensus 127 -----------l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~-~~~~l~~l~~L~~L~Ls~N~i--~~l~- 191 (605)
T 1m9s_A 127 -----------LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSKNHI--SDLR- 191 (605)
T ss_dssp -----------GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCC-CCGGGTTCTTCCEEECCSSCC--CBCG-
T ss_pred -----------ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCC-CchhhccCCCCCEEECcCCCC--CCCh-
Confidence 13457788888877765332 33667777777664111 011245577777777743222 1111
Q ss_pred HhccCCcccEEEeee
Q 014774 279 MLYWASEVKHLYMKV 293 (419)
Q Consensus 279 l~~~~~~L~~L~l~~ 293 (419)
.+..+++|+.|.+..
T Consensus 192 ~l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 192 ALAGLKNLDVLELFS 206 (605)
T ss_dssp GGTTCTTCSEEECCS
T ss_pred HHccCCCCCEEEccC
Confidence 255677777777754
No 75
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.74 E-value=2.2e-08 Score=99.46 Aligned_cols=236 Identities=14% Similarity=0.127 Sum_probs=131.1
Q ss_pred CCceEEEEEecCccccccccCCCcccccccCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCC
Q 014774 95 STLKHLELRMDNLADYQGCLENPSKLDCISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACP 174 (419)
Q Consensus 95 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 174 (419)
+.|+.|++....... ....+..+ +|++|++.++.....+. ..+++|+.|+++++.+....- ...+|
T Consensus 282 ~~L~~L~l~~~~l~~---------l~~~~~~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L~l~~n~~~~~~~---~~~~~ 347 (570)
T 2z63_A 282 TNVSSFSLVSVTIER---------VKDFSYNF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTSNKGGNAFS---EVDLP 347 (570)
T ss_dssp TTCSEEEEESCEECS---------CCBCCSCC-CCSEEEEESCBCSSCCB-CBCSSCCEEEEESCBSCCBCC---CCBCT
T ss_pred CcccEEEecCccchh---------hhhhhccC-CccEEeeccCcccccCc-ccccccCEEeCcCCccccccc---cccCC
Confidence 678888876433211 01123335 78888887766543332 456777777777776322110 05677
Q ss_pred CCcEEEccCCCCcccccccccccccceeeEecccCcee------eecCCCccEEEecCcccee------eccCCcCceeE
Q 014774 175 NLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSL------SVSCPKIQFLEVQGCSWIR------VQETNCLRNLS 242 (419)
Q Consensus 175 ~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l------~~~~~~L~~L~l~~~~~~~------l~~~~~L~~L~ 242 (419)
+|++|+++++................+|+.+.+.++.+ ...+++|+.|+++++.+.. +..+++|+.|+
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence 77777777664322110001111223555555554421 2457888888888876532 23367888888
Q ss_pred eecccceE-EEeccCCCCCcCEeeeCCCCchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCee
Q 014774 243 ISNNAGRV-YMVDFGKLAALESLTLRGVQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQ 321 (419)
Q Consensus 243 l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~ 321 (419)
++++.-.. ....+.++++|+.|++++.......+...+..+++|+.|+++.....+ .. ...+..+++|+
T Consensus 428 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~---------~~-~~~~~~l~~L~ 497 (570)
T 2z63_A 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ---------LS-PTAFNSLSSLQ 497 (570)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE---------EC-TTTTTTCTTCC
T ss_pred CcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcccc---------CC-hhhhhcccCCC
Confidence 87752111 111345688899999855332101233446678899999986422221 00 11235678899
Q ss_pred EEEecCchhHhhhhcccccccccccccccccceeeeccCC
Q 014774 322 KFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRSP 361 (419)
Q Consensus 322 ~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~ 361 (419)
.|++++|.+..+-. ..+. .+++|+.|+++++.-
T Consensus 498 ~L~l~~n~l~~~~~-~~~~------~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 498 VLNMASNQLKSVPD-GIFD------RLTSLQKIWLHTNPW 530 (570)
T ss_dssp EEECCSSCCSCCCT-TTTT------TCTTCCEEECCSSCB
T ss_pred EEeCCCCcCCCCCH-HHhh------cccCCcEEEecCCcc
Confidence 99998876542200 0111 258888888877643
No 76
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.72 E-value=4.9e-08 Score=96.47 Aligned_cols=242 Identities=14% Similarity=0.120 Sum_probs=116.5
Q ss_pred cCCceEEEEEecCccccccccCCCcccccccCCCCccEEEecCccccCCcc-------cccCCCccEEEecCeeeChHHH
Q 014774 94 GSTLKHLELRMDNLADYQGCLENPSKLDCISRAKNLESLKLWGVLMVSSPK-------WDVFHKLQNLEIVGARLEDPAL 166 (419)
Q Consensus 94 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~~~-------~~~~~~L~~L~L~~~~~~~~~l 166 (419)
..+++.+.+........ ..........+...++|+.|.+.++....... +...++|+.|+++++.++.-.
T Consensus 250 ~~~L~~l~l~~~~~~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip- 326 (549)
T 2z81_A 250 ILELSEVEFDDCTLNGL--GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP- 326 (549)
T ss_dssp CTTCCEEEEESCEEECC--SCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCC-
T ss_pred hcccccccccccccccc--ccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCC-
Confidence 36788887764332210 00011112233345566666665543211110 122345666666665533110
Q ss_pred HHHHhcCCCCcEEEccCCCCcccccc-cccccccceeeEecccCcee---------eecCCCccEEEecCccceeecc--
Q 014774 167 STALRACPNLTNLLLLGCEGVRSVSI-ELPHLEQCKLDFYGLGNCSL---------SVSCPKIQFLEVQGCSWIRVQE-- 234 (419)
Q Consensus 167 ~~l~~~~p~L~~L~l~~c~~~~~~~~-~~~~l~~~~L~~l~~~~~~l---------~~~~~~L~~L~l~~~~~~~l~~-- 234 (419)
..+.+.+++|++|+++++...+...- .........|+.+.++++.+ ...+++|+.|++++|.+..++.
T Consensus 327 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~ 406 (549)
T 2z81_A 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC 406 (549)
T ss_dssp HHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCC
T ss_pred HHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhh
Confidence 11223556666666665543221000 00001112444444444432 2346778888888776644442
Q ss_pred --CCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHH
Q 014774 235 --TNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVE 312 (419)
Q Consensus 235 --~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~ 312 (419)
.++|+.|+++++.- ........++|+.|++++..- .+ +...+++|++|+++...... ++.
T Consensus 407 ~~~~~L~~L~Ls~N~l--~~l~~~~~~~L~~L~Ls~N~l--~~---~~~~l~~L~~L~Ls~N~l~~------ip~----- 468 (549)
T 2z81_A 407 QWPEKMRFLNLSSTGI--RVVKTCIPQTLEVLDVSNNNL--DS---FSLFLPRLQELYISRNKLKT------LPD----- 468 (549)
T ss_dssp CCCTTCCEEECTTSCC--SCCCTTSCTTCSEEECCSSCC--SC---CCCCCTTCCEEECCSSCCSS------CCC-----
T ss_pred cccccccEEECCCCCc--ccccchhcCCceEEECCCCCh--hh---hcccCChhcEEECCCCccCc------CCC-----
Confidence 56777777776411 011111135788888844322 11 23567888888886522222 111
Q ss_pred HhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeeccCCCCc
Q 014774 313 FFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRSPLNA 364 (419)
Q Consensus 313 ~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~ 364 (419)
....++|+.|++++|.+..+-. ..+. .+++|+.|+++++....+
T Consensus 469 -~~~l~~L~~L~Ls~N~l~~~~~-~~~~------~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 469 -ASLFPVLLVMKISRNQLKSVPD-GIFD------RLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp -GGGCTTCCEEECCSSCCCCCCT-TGGG------GCTTCCEEECCSSCBCCC
T ss_pred -cccCccCCEEecCCCccCCcCH-HHHh------cCcccCEEEecCCCccCC
Confidence 1346788888888776542200 0111 247888888877764443
No 77
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.70 E-value=6.4e-09 Score=85.24 Aligned_cols=84 Identities=10% Similarity=0.185 Sum_probs=70.2
Q ss_pred CCCccEEEecCccccCCcc---cccCCCccEEEecCee-eChHHHHHHHhc---CCCCcEEEccCCCCcccccccccccc
Q 014774 126 AKNLESLKLWGVLMVSSPK---WDVFHKLQNLEIVGAR-LEDPALSTALRA---CPNLTNLLLLGCEGVRSVSIELPHLE 198 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~~---~~~~~~L~~L~L~~~~-~~~~~l~~l~~~---~p~L~~L~l~~c~~~~~~~~~~~~l~ 198 (419)
..+|++|++++|. +++.+ +..|++|+.|+|++|. ++|.++..+... |++|++|++++|..+++.++..+
T Consensus 60 ~~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L--- 135 (176)
T 3e4g_A 60 KYKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL--- 135 (176)
T ss_dssp CCCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG---
T ss_pred CceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH---
Confidence 4579999999997 55553 4789999999999998 999999999873 78999999999999999887643
Q ss_pred cceeeEecccCceeeecCCCccEEEecCcc
Q 014774 199 QCKLDFYGLGNCSLSVSCPKIQFLEVQGCS 228 (419)
Q Consensus 199 ~~~L~~l~~~~~~l~~~~~~L~~L~l~~~~ 228 (419)
..+++|++|++++|.
T Consensus 136 ---------------~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 136 ---------------HHFRNLKYLFLSDLP 150 (176)
T ss_dssp ---------------GGCTTCCEEEEESCT
T ss_pred ---------------hcCCCCCEEECCCCC
Confidence 245888888888874
No 78
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.68 E-value=2.9e-08 Score=91.49 Aligned_cols=257 Identities=11% Similarity=0.080 Sum_probs=141.3
Q ss_pred CCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceee
Q 014774 126 AKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLD 203 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~ 203 (419)
.++|+.|++.++.....+ .+..+++|+.|+++++.++... ...+..+++|++|+++++... ...... ...|+
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~-~l~~~~----~~~L~ 124 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQLK-ELPEKM----PKTLQ 124 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCS-BCCSSC----CTTCC
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCcCC-ccChhh----ccccc
Confidence 467888888776543332 3567788888888887754321 112456788888888776432 111111 13555
Q ss_pred EecccCcee-------eecCCCccEEEecCccce-------eeccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCC
Q 014774 204 FYGLGNCSL-------SVSCPKIQFLEVQGCSWI-------RVQETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGV 269 (419)
Q Consensus 204 ~l~~~~~~l-------~~~~~~L~~L~l~~~~~~-------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 269 (419)
.+.+.++.+ ...+++|+.|+++++.+. .+..+++|+.|.++++.-. .......++|++|++++.
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~L~~L~l~~n 202 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT--TIPQGLPPSLTELHLDGN 202 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC--SCCSSCCTTCSEEECTTS
T ss_pred EEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc--cCCccccccCCEEECCCC
Confidence 555554431 234688999999887652 1334788888888874111 111122478999999542
Q ss_pred CchHHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccc
Q 014774 270 QWCWDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIP 349 (419)
Q Consensus 270 ~~~~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p 349 (419)
... ......+..+++|+.|+++.....+ .. ...+..+++|+.|++++|.+..+-. .+ ..++
T Consensus 203 ~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~---------~~-~~~~~~l~~L~~L~L~~N~l~~lp~--~l------~~l~ 263 (330)
T 1xku_A 203 KIT-KVDAASLKGLNNLAKLGLSFNSISA---------VD-NGSLANTPHLRELHLNNNKLVKVPG--GL------ADHK 263 (330)
T ss_dssp CCC-EECTGGGTTCTTCCEEECCSSCCCE---------EC-TTTGGGSTTCCEEECCSSCCSSCCT--TT------TTCS
T ss_pred cCC-ccCHHHhcCCCCCCEEECCCCcCce---------eC-hhhccCCCCCCEEECCCCcCccCCh--hh------ccCC
Confidence 220 0112245678999999996522222 00 1124567899999999876542200 11 1358
Q ss_pred cccceeeeccCCCCchhhhhhHHh-hhhcccchhhHHHHhhhhccCCCchhHHHHHHhccccc
Q 014774 350 CLEEVVVTVRSPLNAEQKMSTLES-LLKYGKNLKTMVIRILQMKSSHSSSDDFFDEICRFRCM 411 (419)
Q Consensus 350 ~L~~l~l~~~~~~~~~~~~~~l~~-ll~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (419)
+|+.|+++++. +++.+...+-.. .....+.++.+.+..+++.... .....|.+..+++.+
T Consensus 264 ~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~-i~~~~f~~~~~l~~l 324 (330)
T 1xku_A 264 YIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE-IQPSTFRCVYVRAAV 324 (330)
T ss_dssp SCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG-SCGGGGTTCCCGGGE
T ss_pred CcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccc-cCccccccccceeEE
Confidence 89999998653 332110011000 0112467777777766543211 112334455555443
No 79
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.67 E-value=2.9e-08 Score=98.45 Aligned_cols=106 Identities=14% Similarity=0.079 Sum_probs=65.5
Q ss_pred CCcceEEEec-CCCcchHHHHHHHhcCCceEEEEEecCccccccccCCCcccccccCCCCccEEEecCccccCCcccccC
Q 014774 70 VCLEELVVYT-PFSKAGLDSWLMLAGSTLKHLELRMDNLADYQGCLENPSKLDCISRAKNLESLKLWGVLMVSSPKWDVF 148 (419)
Q Consensus 70 ~~L~~l~l~~-~~~~~~~~~w~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~~~~~~~ 148 (419)
.+++.++++. .........+ ...+.|++|+++..... ......+..+++|++|+++++.....+.. .+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~--~~l~~L~~L~Ls~N~l~--------~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l 120 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDI--SFLSELRVLRLSHNRIR--------SLDFHVFLFNQDLEYLDVSHNRLQNISCC-PM 120 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGT--TTCTTCCEEECCSCCCC--------EECTTTTTTCTTCCEEECTTSCCCEECSC-CC
T ss_pred CCcCEEECCCCCccccChhhh--ccCCCccEEECCCCCCC--------cCCHHHhCCCCCCCEEECCCCcCCccCcc-cc
Confidence 5788888843 2222110011 12367788877644322 11113355578999999988765444433 78
Q ss_pred CCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCC
Q 014774 149 HKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEG 186 (419)
Q Consensus 149 ~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~ 186 (419)
++|+.|+++++.++.......+.++++|++|+++++..
T Consensus 121 ~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 121 ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp TTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred ccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence 99999999999865432223456789999999988754
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.64 E-value=3.4e-08 Score=88.22 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=39.0
Q ss_pred CCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCC
Q 014774 126 AKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCE 185 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~ 185 (419)
.+++++|+++++.....+ .+..+++|+.|+++++.++... ..++..+++|++|+++++.
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC-TTTTSSCTTCCEEECCSSC
T ss_pred CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC-hhhhcCCCCCCEEECCCCc
Confidence 357888888876544333 3567888888888887754211 1223567888888887764
No 81
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.64 E-value=1.3e-07 Score=85.45 Aligned_cols=167 Identities=17% Similarity=0.169 Sum_probs=103.7
Q ss_pred cCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceee
Q 014774 124 SRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLD 203 (419)
Q Consensus 124 ~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~ 203 (419)
..+++|+.|++.++.....+.+..+++|+.|+++++.+++..- +..+++|+.|+++++.......
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~------------ 107 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LANLKNLGWLFLDENKVKDLSS------------ 107 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCGGG------------
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc---cccCCCCCEEECCCCcCCCChh------------
Confidence 3477899999988766555567788999999999998664321 6789999999998875432111
Q ss_pred EecccCceeeecCCCccEEEecCccceee---ccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHHHHHHh
Q 014774 204 FYGLGNCSLSVSCPKIQFLEVQGCSWIRV---QETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDAISKML 280 (419)
Q Consensus 204 ~l~~~~~~l~~~~~~L~~L~l~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~ 280 (419)
...+++|+.|+++++.+..+ ..+++|+.|+++++.-.. ...+..+++|+.|++++... ..+.. +
T Consensus 108 ---------l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~l--~~~~~-l 174 (291)
T 1h6t_A 108 ---------LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD-ITVLSRLTKLDTLSLEDNQI--SDIVP-L 174 (291)
T ss_dssp ---------GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCC--CCCGG-G
T ss_pred ---------hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCc-chhhccCCCCCEEEccCCcc--ccchh-h
Confidence 12346666666666655332 235667777776641110 12345577888888843222 11111 5
Q ss_pred ccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchh
Q 014774 281 YWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMF 330 (419)
Q Consensus 281 ~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 330 (419)
..+++|+.|+++....++ + .. +..+++|+.|+++++.+
T Consensus 175 ~~l~~L~~L~L~~N~i~~---------l--~~-l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISD---------L--RA-LAGLKNLDVLELFSQEC 212 (291)
T ss_dssp TTCTTCCEEECCSSCCCB---------C--GG-GTTCTTCSEEEEEEEEE
T ss_pred cCCCccCEEECCCCcCCC---------C--hh-hccCCCCCEEECcCCcc
Confidence 667888888886532322 1 11 45678888888887654
No 82
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.63 E-value=5.6e-08 Score=82.41 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=25.0
Q ss_pred CCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCC
Q 014774 126 AKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGC 184 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c 184 (419)
+++|++|++.++.....+++..+++|+.|++++|.+++.. .+..+++|++|+++++
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~l~~n 98 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN---PISGLSNLERLRIMGK 98 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG---GGTTCTTCCEEEEECT
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch---hhhcCCCCCEEEeECC
Confidence 4455555554443332233444455555555555432211 1334555555555544
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.63 E-value=1.7e-08 Score=90.48 Aligned_cols=12 Identities=8% Similarity=0.387 Sum_probs=7.4
Q ss_pred CeeEEEecCchh
Q 014774 319 KLQKFDIHGAMF 330 (419)
Q Consensus 319 ~L~~L~l~~~~~ 330 (419)
+|+.|++++|.+
T Consensus 201 ~L~~L~L~~n~l 212 (276)
T 2z62_A 201 RLKELALDTNQL 212 (276)
T ss_dssp CEEEEECCSSCC
T ss_pred cccEEECCCCce
Confidence 566666666554
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.59 E-value=5.4e-08 Score=88.82 Aligned_cols=153 Identities=12% Similarity=0.064 Sum_probs=92.8
Q ss_pred cCCCccEEEecCccceee-----ccCCcCceeEeeccc--c---eEEEeccCCCCCcCEeeeCC--CCchHHHHHHHhcc
Q 014774 215 SCPKIQFLEVQGCSWIRV-----QETNCLRNLSISNNA--G---RVYMVDFGKLAALESLTLRG--VQWCWDAISKMLYW 282 (419)
Q Consensus 215 ~~~~L~~L~l~~~~~~~l-----~~~~~L~~L~l~~~~--~---~~~~~~~~~~~~L~~L~l~~--~~~~~~~l~~l~~~ 282 (419)
.+++|+.|+++++.+..+ ...++|+.|+++++. + .......+.+++|++|++++ ++........+...
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 467899999988876332 247788999888752 1 11011235688999999954 33211223335678
Q ss_pred CCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeeccCCC
Q 014774 283 ASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRSPL 362 (419)
Q Consensus 283 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~ 362 (419)
+++|++|+++....++.. + ..+.. ....++|++|++++|.+..+ +.. ..++|+.|+++++. +
T Consensus 223 l~~L~~L~Ls~N~l~~~~---p---~~~~~-~~~~~~L~~L~Ls~N~l~~l---------p~~-~~~~L~~L~Ls~N~-l 284 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATV---N---PSAPR-CMWSSALNSLNLSFAGLEQV---------PKG-LPAKLRVLDLSSNR-L 284 (310)
T ss_dssp TCCCSSEECTTSCCCCCC---C---SCCSS-CCCCTTCCCEECCSSCCCSC---------CSC-CCSCCSCEECCSCC-C
T ss_pred CCCCCEEECCCCCCCccc---h---hhHHh-ccCcCcCCEEECCCCCCCch---------hhh-hcCCCCEEECCCCc-C
Confidence 899999999753333200 0 00000 11237999999998765422 111 13899999998764 3
Q ss_pred CchhhhhhHHhhhhcccchhhHHHHhhhhc
Q 014774 363 NAEQKMSTLESLLKYGKNLKTMVIRILQMK 392 (419)
Q Consensus 363 ~~~~~~~~l~~ll~~~~~L~~L~i~~~~~~ 392 (419)
++ ++ ....+++|+.|.+..+.+.
T Consensus 285 ~~------~~-~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 285 NR------AP-QPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CS------CC-CTTSCCCCSCEECSSTTTS
T ss_pred CC------Cc-hhhhCCCccEEECcCCCCC
Confidence 32 11 1466799999988776553
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.58 E-value=5.3e-08 Score=88.99 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=16.5
Q ss_pred CCCccEEEecCcccc-CCc-cc--ccCCCccEEEecCeeeC
Q 014774 126 AKNLESLKLWGVLMV-SSP-KW--DVFHKLQNLEIVGARLE 162 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~-~~~-~~--~~~~~L~~L~L~~~~~~ 162 (419)
+++|++|++.++... ..+ .+ ..+++|+.|+++++.++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 134 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCc
Confidence 445555555544322 111 11 44555555555555533
No 86
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.56 E-value=2.6e-07 Score=92.11 Aligned_cols=92 Identities=21% Similarity=0.238 Sum_probs=54.9
Q ss_pred CCcceEEEec-CCCcchHHHHHHHhcCCceEEEEEecCccccccccCCCcccccccCCCCccEEEecCccccCCcccccC
Q 014774 70 VCLEELVVYT-PFSKAGLDSWLMLAGSTLKHLELRMDNLADYQGCLENPSKLDCISRAKNLESLKLWGVLMVSSPKWDVF 148 (419)
Q Consensus 70 ~~L~~l~l~~-~~~~~~~~~w~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~~~~~~~ 148 (419)
.+|+.|.++. .... ++. ..++|+.|+++..... .+.. ..++|++|+++++.....+. .+
T Consensus 61 ~~L~~L~L~~N~l~~--lp~----~l~~L~~L~Ls~N~l~----------~lp~--~l~~L~~L~Ls~N~l~~l~~--~l 120 (622)
T 3g06_A 61 AHITTLVIPDNNLTS--LPA----LPPELRTLEVSGNQLT----------SLPV--LPPGLLELSIFSNPLTHLPA--LP 120 (622)
T ss_dssp TTCSEEEECSCCCSC--CCC----CCTTCCEEEECSCCCS----------CCCC--CCTTCCEEEECSCCCCCCCC--CC
T ss_pred CCCcEEEecCCCCCC--CCC----cCCCCCEEEcCCCcCC----------cCCC--CCCCCCEEECcCCcCCCCCC--CC
Confidence 4678888843 2221 111 1267888877744322 1111 36788888888775443333 56
Q ss_pred CCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCC
Q 014774 149 HKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEG 186 (419)
Q Consensus 149 ~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~ 186 (419)
++|+.|++++|.++. +-...++|++|++++|..
T Consensus 121 ~~L~~L~L~~N~l~~-----lp~~l~~L~~L~Ls~N~l 153 (622)
T 3g06_A 121 SGLCKLWIFGNQLTS-----LPVLPPGLQELSVSDNQL 153 (622)
T ss_dssp TTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCC
T ss_pred CCcCEEECCCCCCCc-----CCCCCCCCCEEECcCCcC
Confidence 778888888877543 112357888888887743
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.54 E-value=1.8e-08 Score=92.01 Aligned_cols=62 Identities=27% Similarity=0.234 Sum_probs=32.7
Q ss_pred cCCCCccEEEecCccccCCc------ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCC
Q 014774 124 SRAKNLESLKLWGVLMVSSP------KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEG 186 (419)
Q Consensus 124 ~~~~~L~~L~L~~~~~~~~~------~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~ 186 (419)
...++|++|+++++...... ....+++|+.|+++++.++... ...+..+++|++|+++++..
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l 181 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFS-CEQVRAFPALTSLDLSDNPG 181 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCC-TTSCCCCTTCCEEECCSCTT
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhh-HHHhccCCCCCEEECCCCCC
Confidence 33666777777665433211 1134666777777666643211 11234566667777666654
No 88
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.54 E-value=7.9e-07 Score=85.56 Aligned_cols=130 Identities=17% Similarity=0.169 Sum_probs=65.9
Q ss_pred CCceEEEEEecCccccccccCCCcccccccCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCC
Q 014774 95 STLKHLELRMDNLADYQGCLENPSKLDCISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACP 174 (419)
Q Consensus 95 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p 174 (419)
+.|+.|++...... .+..++.+++|++|+++++.....+. ..++|+.|+++++.++. +.. +..++
T Consensus 131 ~~L~~L~L~~n~l~----------~lp~~~~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n~l~~--l~~-~~~l~ 195 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE----------KLPELQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNNQLEE--LPE-LQNLP 195 (454)
T ss_dssp TTCCEEECCSSCCS----------SCCCCTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSS--CCC-CTTCT
T ss_pred CCCCEEECcCCCCC----------CCcccCCCCCCCEEECCCCcCcccCC--CcccccEEECcCCcCCc--Ccc-ccCCC
Confidence 56788877643321 12335567788888887765433222 23577777777776543 111 45677
Q ss_pred CCcEEEccCCCCcccccccccccccceeeEecccCcee-----eecCCCccEEEecCccceeecc-CCcCceeEeec
Q 014774 175 NLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSL-----SVSCPKIQFLEVQGCSWIRVQE-TNCLRNLSISN 245 (419)
Q Consensus 175 ~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l-----~~~~~~L~~L~l~~~~~~~l~~-~~~L~~L~l~~ 245 (419)
+|++|++++|...+-... ...|+.+.++++.+ ...+++|+.|+++++.+..++. .++|+.|++++
T Consensus 196 ~L~~L~l~~N~l~~l~~~------~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~ 266 (454)
T 1jl5_A 196 FLTAIYADNNSLKKLPDL------PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRD 266 (454)
T ss_dssp TCCEEECCSSCCSSCCCC------CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCS
T ss_pred CCCEEECCCCcCCcCCCC------cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccccccccCEEECCC
Confidence 777777776643321100 01333443333321 1133455556655554433332 34555555544
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.54 E-value=2.5e-07 Score=82.79 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=33.2
Q ss_pred CCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCC
Q 014774 127 KNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCE 185 (419)
Q Consensus 127 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~ 185 (419)
++|++|+++++.....+ .+..+++|+.|+++++.++...- ..+..+++|++|+++++.
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCc
Confidence 46777777665433222 34566777777777776432111 123456777777776664
No 90
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.52 E-value=1.4e-07 Score=93.93 Aligned_cols=56 Identities=18% Similarity=0.130 Sum_probs=28.4
Q ss_pred CCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCC
Q 014774 126 AKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGC 184 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c 184 (419)
.++|+.|.+.++.....+.+..+++|+.|+|++|.+++..- +..+++|+.|++++|
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSS
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCC
Confidence 44555555555443333344555566666666555432111 445556666666555
No 91
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.50 E-value=1.8e-07 Score=83.59 Aligned_cols=152 Identities=16% Similarity=0.171 Sum_probs=89.3
Q ss_pred ccccCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccc
Q 014774 121 DCISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQC 200 (419)
Q Consensus 121 ~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~ 200 (419)
..+..+++|++|++.++.....+.+..+++|+.|+++++.++... ...+..+++|++|++++|...+...
T Consensus 57 ~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~--------- 126 (272)
T 3rfs_A 57 QGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQLQSLPD--------- 126 (272)
T ss_dssp TTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCT---------
T ss_pred cccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccC-hhHhcCCcCCCEEECCCCcCCccCH---------
Confidence 345567788888887766544445677788888888887754311 1224567888888887774322110
Q ss_pred eeeEecccCceeeecCCCccEEEecCccceee-----ccCCcCceeEeecccceEEEe-ccCCCCCcCEeeeCCCCchHH
Q 014774 201 KLDFYGLGNCSLSVSCPKIQFLEVQGCSWIRV-----QETNCLRNLSISNNAGRVYMV-DFGKLAALESLTLRGVQWCWD 274 (419)
Q Consensus 201 ~L~~l~~~~~~l~~~~~~L~~L~l~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~ 274 (419)
.....+++|+.|++++|.+..+ ..+++|+.|+++++.-..... .++++++|+.|++.+.... .
T Consensus 127 ----------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 195 (272)
T 3rfs_A 127 ----------GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-S 195 (272)
T ss_dssp ----------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-C
T ss_pred ----------HHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC-c
Confidence 0012346677777777655332 235677777777641110111 2356789999999432210 0
Q ss_pred HHHHHhccCCcccEEEeee
Q 014774 275 AISKMLYWASEVKHLYMKV 293 (419)
Q Consensus 275 ~l~~l~~~~~~L~~L~l~~ 293 (419)
.....+..+++|+.|++..
T Consensus 196 ~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 196 VPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp CCTTTTTTCTTCCEEECCS
T ss_pred cCHHHHhCCcCCCEEEccC
Confidence 1113456789999999964
No 92
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.46 E-value=1.4e-07 Score=85.08 Aligned_cols=173 Identities=18% Similarity=0.154 Sum_probs=96.9
Q ss_pred CCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceee
Q 014774 126 AKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLD 203 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~ 203 (419)
.++++.|+++++.....+ .+..+++|+.|+++++.++.... ...+++|+.|+++++....-.
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~------------- 93 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQLQSLP------------- 93 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSCCSSCC-------------
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCcCCcCc-------------
Confidence 367888888776543222 35677888888888877543211 156778888888776432110
Q ss_pred EecccCceeeecCCCccEEEecCccceee-----ccCCcCceeEeecccceEEEe-ccCCCCCcCEeeeCCCCchHHHH-
Q 014774 204 FYGLGNCSLSVSCPKIQFLEVQGCSWIRV-----QETNCLRNLSISNNAGRVYMV-DFGKLAALESLTLRGVQWCWDAI- 276 (419)
Q Consensus 204 ~l~~~~~~l~~~~~~L~~L~l~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~l- 276 (419)
......++|+.|+++++.+..+ ...++|+.|.++++.-..... .+..+++|+.|++++-.. ..+
T Consensus 94 -------~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l--~~l~ 164 (290)
T 1p9a_G 94 -------LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL--TELP 164 (290)
T ss_dssp -------CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC--SCCC
T ss_pred -------hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC--CccC
Confidence 0112456777777777765333 235677777776641111111 134577888888843221 111
Q ss_pred HHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhh
Q 014774 277 SKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALC 334 (419)
Q Consensus 277 ~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~ 334 (419)
...+..+++|+.|+++...... ++ .-....++|+.+.+++|.+.+-|
T Consensus 165 ~~~~~~l~~L~~L~L~~N~l~~------ip-----~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENSLYT------IP-----KGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TTTTTTCTTCCEEECCSSCCCC------CC-----TTTTTTCCCSEEECCSCCBCCSG
T ss_pred HHHhcCcCCCCEEECCCCcCCc------cC-----hhhcccccCCeEEeCCCCccCcC
Confidence 1234567888888886422222 11 11223468888888887765444
No 93
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.44 E-value=6e-07 Score=80.97 Aligned_cols=198 Identities=16% Similarity=0.106 Sum_probs=123.0
Q ss_pred ccCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCccccccccccccccee
Q 014774 123 ISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKL 202 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L 202 (419)
++.+++++++++.+......|. ...+.++.|+++++.++.... ..+..+++|+.|+++++......
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~------------ 71 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQ------------ 71 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEE------------
T ss_pred ccccCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCccc------------
Confidence 4456789999988765444332 224789999999998653211 23567899999999987532111
Q ss_pred eEecccCceeeecCCCccEEEecCccceeec----cCCcCceeEeecccceEEE-eccCCCCCcCEeeeCCCCchHHHHH
Q 014774 203 DFYGLGNCSLSVSCPKIQFLEVQGCSWIRVQ----ETNCLRNLSISNNAGRVYM-VDFGKLAALESLTLRGVQWCWDAIS 277 (419)
Q Consensus 203 ~~l~~~~~~l~~~~~~L~~L~l~~~~~~~l~----~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~l~ 277 (419)
.....++|+.|+++++.+..++ ..++|+.|.++++.-.... ..+.++++|+.|++++-... ....
T Consensus 72 ---------~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~ 141 (290)
T 1p9a_G 72 ---------VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPP 141 (290)
T ss_dssp ---------CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCT
T ss_pred ---------CCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccCh
Confidence 0134678899999888774443 3678999999875211111 13556889999999442220 0111
Q ss_pred HHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeee
Q 014774 278 KMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVT 357 (419)
Q Consensus 278 ~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~ 357 (419)
..+..+++|+.|+++...... ++ ...+..+++|+.|++++|.+..+-. ..+..++|+.+++.
T Consensus 142 ~~~~~l~~L~~L~L~~N~l~~------l~----~~~~~~l~~L~~L~L~~N~l~~ip~--------~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 142 GLLTPTPKLEKLSLANNNLTE------LP----AGLLNGLENLDTLLLQENSLYTIPK--------GFFGSHLLPFAFLH 203 (290)
T ss_dssp TTTTTCTTCCEEECTTSCCSC------CC----TTTTTTCTTCCEEECCSSCCCCCCT--------TTTTTCCCSEEECC
T ss_pred hhcccccCCCEEECCCCcCCc------cC----HHHhcCcCCCCEEECCCCcCCccCh--------hhcccccCCeEEeC
Confidence 235568899999996522222 11 1234567899999999876542200 01124678888887
Q ss_pred ccCCC
Q 014774 358 VRSPL 362 (419)
Q Consensus 358 ~~~~~ 362 (419)
+....
T Consensus 204 ~Np~~ 208 (290)
T 1p9a_G 204 GNPWL 208 (290)
T ss_dssp SCCBC
T ss_pred CCCcc
Confidence 65543
No 94
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.42 E-value=9.3e-07 Score=85.06 Aligned_cols=54 Identities=19% Similarity=0.124 Sum_probs=24.8
Q ss_pred CCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCC
Q 014774 127 KNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCE 185 (419)
Q Consensus 127 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~ 185 (419)
++|++|+++++.....+.. .++|+.|+++++.++. +.. +..+++|++|+++++.
T Consensus 111 ~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~--lp~-~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNS 164 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSC
T ss_pred CCCcEEECCCCccCcccCC--CCCCCEEECcCCCCCC--Ccc-cCCCCCCCEEECCCCc
Confidence 4555555554432221111 1455555555555432 111 3455555555555553
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.41 E-value=1.6e-07 Score=82.20 Aligned_cols=59 Identities=10% Similarity=0.162 Sum_probs=31.8
Q ss_pred CCccEEEecCccccCCc--ccccCCCccEEEecCee-eChHHHHHHHhcCCCCcEEEccCCCC
Q 014774 127 KNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGAR-LEDPALSTALRACPNLTNLLLLGCEG 186 (419)
Q Consensus 127 ~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~~p~L~~L~l~~c~~ 186 (419)
++|++|++.++.....+ .+..+++|+.|+++++. ++.-.- ..+.++++|++|++++|..
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~ 92 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRN 92 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETT
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCC
Confidence 46777777665432222 34566777777777664 332110 1134567777777765433
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.40 E-value=2.7e-06 Score=71.93 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=25.2
Q ss_pred CCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCC
Q 014774 125 RAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGC 184 (419)
Q Consensus 125 ~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c 184 (419)
.+++|++|++.++.....+.+..+++|+.|+++++.+++..... +..+++|+.|++++|
T Consensus 64 ~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 64 YAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHS 122 (197)
T ss_dssp GCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEECCSS
T ss_pred cCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEecCC
Confidence 34455555555442222223344455555555554443322111 234455555555544
No 97
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.40 E-value=6.6e-07 Score=79.78 Aligned_cols=163 Identities=18% Similarity=0.182 Sum_probs=97.9
Q ss_pred cccCCCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCccccccccccccc
Q 014774 122 CISRAKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQ 199 (419)
Q Consensus 122 ~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~ 199 (419)
.+..+++|++|++.++.....+ .+..+++|+.|+++++.++... ...+..+++|++|+++++.......
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~-------- 126 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLAELRLDRNQLKSLPP-------- 126 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCCEEECCSSCCCCCCT--------
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCCEEECCCCccCeeCH--------
Confidence 4566889999999887654433 3467899999999999865321 1234678999999998875322110
Q ss_pred ceeeEecccCceeeecCCCccEEEecCccceeeccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHHH-HH
Q 014774 200 CKLDFYGLGNCSLSVSCPKIQFLEVQGCSWIRVQETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDAI-SK 278 (419)
Q Consensus 200 ~~L~~l~~~~~~l~~~~~~L~~L~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l-~~ 278 (419)
.....+++|+.|+++++.+..++. ..+..+++|++|++++... ..+ ..
T Consensus 127 -----------~~~~~l~~L~~L~Ls~n~l~~~~~------------------~~~~~l~~L~~L~L~~n~l--~~~~~~ 175 (270)
T 2o6q_A 127 -----------RVFDSLTKLTYLSLGYNELQSLPK------------------GVFDKLTSLKELRLYNNQL--KRVPEG 175 (270)
T ss_dssp -----------TTTTTCTTCCEEECCSSCCCCCCT------------------TTTTTCTTCCEEECCSSCC--SCCCTT
T ss_pred -----------HHhCcCcCCCEEECCCCcCCccCH------------------hHccCCcccceeEecCCcC--cEeChh
Confidence 001245788888888775422111 0123466777777733211 000 11
Q ss_pred HhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhh
Q 014774 279 MLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALC 334 (419)
Q Consensus 279 l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~ 334 (419)
.+..+++|++|+++........ ...+..+++|+.|+++++.+.+-|
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 176 AFDKLTELKTLKLDNNQLKRVP----------EGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCSSCBCCSS
T ss_pred HhccCCCcCEEECCCCcCCcCC----------HHHhccccCCCEEEecCCCeeCCC
Confidence 2456788888888652222201 112356788999999988765433
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.35 E-value=8.6e-07 Score=78.71 Aligned_cols=143 Identities=19% Similarity=0.138 Sum_probs=89.8
Q ss_pred cccCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccce
Q 014774 122 CISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCK 201 (419)
Q Consensus 122 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~ 201 (419)
.+..+++|+.|++.++.....+.+..+++|+.|+++++.+++..- +..+++|+.|+++++...+-..+
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~--------- 103 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGI--------- 103 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTC---------
T ss_pred chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCcc---------
Confidence 344577888888888765555566778889999998888654322 56788899999888754321111
Q ss_pred eeEecccCceeeecCCCccEEEecCccceee---ccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHHHHH
Q 014774 202 LDFYGLGNCSLSVSCPKIQFLEVQGCSWIRV---QETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDAISK 278 (419)
Q Consensus 202 L~~l~~~~~~l~~~~~~L~~L~l~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~ 278 (419)
.. ++|+.|+++++.+..+ ..+++|+.|+++++.-.. ...+..+++|+.|++++-.. ..+ .
T Consensus 104 ------------~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~-~~~l~~l~~L~~L~L~~N~i--~~~-~ 166 (263)
T 1xeu_A 104 ------------PS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS-IVMLGFLSKLEVLDLHGNEI--TNT-G 166 (263)
T ss_dssp ------------CC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCB-CGGGGGCTTCCEEECTTSCC--CBC-T
T ss_pred ------------cc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCC-ChHHccCCCCCEEECCCCcC--cch-H
Confidence 01 5566666666554322 235667777766541110 11345688899999944322 112 3
Q ss_pred HhccCCcccEEEeee
Q 014774 279 MLYWASEVKHLYMKV 293 (419)
Q Consensus 279 l~~~~~~L~~L~l~~ 293 (419)
.+..+++|+.|++..
T Consensus 167 ~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTG 181 (263)
T ss_dssp TSTTCCCCCEEEEEE
T ss_pred HhccCCCCCEEeCCC
Confidence 466789999999976
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.29 E-value=9.1e-07 Score=77.95 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=85.1
Q ss_pred CCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceee
Q 014774 126 AKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLD 203 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~ 203 (419)
.++++.|++.++.....+ .+..+++|+.|+|+++.++... ...+..+++|++|+++++...... .
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~-~----------- 100 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLASLP-L----------- 100 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCC-T-----------
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcccccC-h-----------
Confidence 367888888876543332 3567888888888888754321 122456788888888776432111 0
Q ss_pred EecccCceeeecCCCccEEEecCccceeeccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHHHH-HHhcc
Q 014774 204 FYGLGNCSLSVSCPKIQFLEVQGCSWIRVQETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDAIS-KMLYW 282 (419)
Q Consensus 204 ~l~~~~~~l~~~~~~L~~L~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~-~l~~~ 282 (419)
.....+++|+.|+++++.+..++. ..+..+++|+.|++++-.. ..+. ..+..
T Consensus 101 -------~~~~~l~~L~~L~L~~N~l~~~~~------------------~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~ 153 (251)
T 3m19_A 101 -------GVFDHLTQLDKLYLGGNQLKSLPS------------------GVFDRLTKLKELRLNTNQL--QSIPAGAFDK 153 (251)
T ss_dssp -------TTTTTCTTCCEEECCSSCCCCCCT------------------TTTTTCTTCCEEECCSSCC--CCCCTTTTTT
T ss_pred -------hHhcccCCCCEEEcCCCcCCCcCh------------------hHhccCCcccEEECcCCcC--CccCHHHcCc
Confidence 001235677777777765422111 0123456666666632111 1111 12445
Q ss_pred CCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhH
Q 014774 283 ASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFA 331 (419)
Q Consensus 283 ~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 331 (419)
+++|++|+++........ ...+..+++|+.|++++|.+.
T Consensus 154 l~~L~~L~L~~N~l~~~~----------~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 154 LTNLQTLSLSTNQLQSVP----------HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CTTCCEEECCSSCCSCCC----------TTTTTTCTTCCEEECCSCCBC
T ss_pred CcCCCEEECCCCcCCccC----------HHHHhCCCCCCEEEeeCCcee
Confidence 677888877542222200 112345678888888877654
No 100
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.27 E-value=1.3e-06 Score=76.20 Aligned_cols=83 Identities=17% Similarity=0.138 Sum_probs=51.7
Q ss_pred CCceEEEEEecCccccccccCCCcccccccCCCCccEEEecCcc-ccCC--cccccCCCccEEEecC-eeeChHHHHHHH
Q 014774 95 STLKHLELRMDNLADYQGCLENPSKLDCISRAKNLESLKLWGVL-MVSS--PKWDVFHKLQNLEIVG-ARLEDPALSTAL 170 (419)
Q Consensus 95 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~-~~~~--~~~~~~~~L~~L~L~~-~~~~~~~l~~l~ 170 (419)
+.++.|++....... ..-..+..+++|++|++.++. .... ..+..+++|+.|++++ +.++.-. ...+
T Consensus 31 ~~l~~L~l~~n~l~~--------i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f 101 (239)
T 2xwt_C 31 PSTQTLKLIETHLRT--------IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDAL 101 (239)
T ss_dssp TTCCEEEEESCCCSE--------ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSE
T ss_pred CcccEEEEeCCcceE--------ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHh
Confidence 456777766443221 011235558899999998874 3222 2467889999999987 5544211 1123
Q ss_pred hcCCCCcEEEccCCCC
Q 014774 171 RACPNLTNLLLLGCEG 186 (419)
Q Consensus 171 ~~~p~L~~L~l~~c~~ 186 (419)
..+++|++|+++++..
T Consensus 102 ~~l~~L~~L~l~~n~l 117 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGL 117 (239)
T ss_dssp ECCTTCCEEEEEEECC
T ss_pred CCCCCCCEEeCCCCCC
Confidence 5688999999987753
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.26 E-value=1.9e-07 Score=82.96 Aligned_cols=163 Identities=19% Similarity=0.156 Sum_probs=103.8
Q ss_pred CccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEecc
Q 014774 128 NLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGL 207 (419)
Q Consensus 128 ~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~ 207 (419)
+++.+.+.+......+....+++|+.|+++++.+++-. -+..+++|+.|+++++...+...
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~L~~N~i~~~~~---------------- 80 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA---GMQFFTNLKELHLSHNQISDLSP---------------- 80 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGG----------------
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch---HHhhCCCCCEEECCCCccCCChh----------------
Confidence 44444554433222224567899999999999866432 35679999999999885332211
Q ss_pred cCceeeecCCCccEEEecCccceeecc--CCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHHHHHHhccCCc
Q 014774 208 GNCSLSVSCPKIQFLEVQGCSWIRVQE--TNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDAISKMLYWASE 285 (419)
Q Consensus 208 ~~~~l~~~~~~L~~L~l~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~ 285 (419)
...+++|+.|+++++.+..++. .++|+.|+++++.-. ....+..+++|+.|++++-.. ..+. .+..+++
T Consensus 81 -----l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N~l~-~~~~l~~l~~L~~L~Ls~N~i--~~~~-~l~~l~~ 151 (263)
T 1xeu_A 81 -----LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELR-DTDSLIHLKNLEILSIRNNKL--KSIV-MLGFLSK 151 (263)
T ss_dssp -----GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSSCCS-BSGGGTTCTTCCEEECTTSCC--CBCG-GGGGCTT
T ss_pred -----hccCCCCCEEECCCCccCCcCccccCcccEEEccCCccC-CChhhcCcccccEEECCCCcC--CCCh-HHccCCC
Confidence 1345788888888887644332 377888888875111 112456788999999944222 1122 3667899
Q ss_pred ccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchh
Q 014774 286 VKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMF 330 (419)
Q Consensus 286 L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 330 (419)
|+.|+++.....+ . ..+..+++|+.|+++++.+
T Consensus 152 L~~L~L~~N~i~~---------~---~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 152 LEVLDLHGNEITN---------T---GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp CCEEECTTSCCCB---------C---TTSTTCCCCCEEEEEEEEE
T ss_pred CCEEECCCCcCcc---------h---HHhccCCCCCEEeCCCCcc
Confidence 9999996533333 1 1245678899999987754
No 102
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.26 E-value=7.7e-06 Score=80.11 Aligned_cols=159 Identities=13% Similarity=0.104 Sum_probs=78.5
Q ss_pred CCCccEEEecCccccC-Cc-ccccCCCccEEEecCeeeCh-HHHHHHHhcCCCCcEEEccCCCCccccccccccccccee
Q 014774 126 AKNLESLKLWGVLMVS-SP-KWDVFHKLQNLEIVGARLED-PALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKL 202 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~-~~-~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L 202 (419)
+++|++|+++++.... .+ .+..+++|+.|++++|.+++ ..+...+..+++|++|+++++...+.....
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~--------- 393 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG--------- 393 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC---------
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc---------
Confidence 5566666665554322 11 33455666666666665443 123333455666666666555332211000
Q ss_pred eEecccCceeeecCCCccEEEecCccceeeccCCcCceeEeecccceEEEeccCCC-CCcCEeeeCCCCchHHHHHHHhc
Q 014774 203 DFYGLGNCSLSVSCPKIQFLEVQGCSWIRVQETNCLRNLSISNNAGRVYMVDFGKL-AALESLTLRGVQWCWDAISKMLY 281 (419)
Q Consensus 203 ~~l~~~~~~l~~~~~~L~~L~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~l~~l~~ 281 (419)
.....++|+.|++++|.+.. . ....+ ++|+.|++++... ..+..-+.
T Consensus 394 ---------~~~~l~~L~~L~Ls~N~l~~-----------------~----~~~~l~~~L~~L~Ls~N~l--~~ip~~~~ 441 (520)
T 2z7x_B 394 ---------DCSWTKSLLSLNMSSNILTD-----------------T----IFRCLPPRIKVLDLHSNKI--KSIPKQVV 441 (520)
T ss_dssp ---------SCCCCTTCCEEECCSSCCCG-----------------G----GGGSCCTTCCEEECCSSCC--CCCCGGGG
T ss_pred ---------hhccCccCCEEECcCCCCCc-----------------c----hhhhhcccCCEEECCCCcc--cccchhhh
Confidence 00123555555555543310 0 00111 5677777743222 12222234
Q ss_pred cCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhh
Q 014774 282 WASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQ 335 (419)
Q Consensus 282 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~ 335 (419)
.+++|++|+++.......+ ...+..+++|+.|++++|.+.+-|.
T Consensus 442 ~l~~L~~L~L~~N~l~~l~----------~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 442 KLEALQELNVASNQLKSVP----------DGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GCTTCCEEECCSSCCCCCC----------TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCCCCEEECCCCcCCccC----------HHHhccCCcccEEECcCCCCcccCC
Confidence 6888999988653222201 0124567899999999887765543
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.22 E-value=4e-06 Score=68.80 Aligned_cols=88 Identities=26% Similarity=0.267 Sum_probs=61.1
Q ss_pred ccCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCccccccccccccccee
Q 014774 123 ISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKL 202 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L 202 (419)
+..+++|+.|++.++.......+..+++|+.|++++|.+++. +..+...+++|+.|++++|...+...+..
T Consensus 45 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------- 115 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNKLKDISTLEP-------- 115 (168)
T ss_dssp CGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSSCCSSGGGGG--------
T ss_pred HHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCccCcchhHHH--------
Confidence 355789999999887654444567889999999999986653 44556679999999999885432111110
Q ss_pred eEecccCceeeecCCCccEEEecCccc
Q 014774 203 DFYGLGNCSLSVSCPKIQFLEVQGCSW 229 (419)
Q Consensus 203 ~~l~~~~~~l~~~~~~L~~L~l~~~~~ 229 (419)
...+++|+.|+++++.+
T Consensus 116 ----------l~~l~~L~~L~l~~N~l 132 (168)
T 2ell_A 116 ----------LKKLECLKSLDLFNCEV 132 (168)
T ss_dssp ----------GSSCSCCCEEECCSSGG
T ss_pred ----------HhcCCCCCEEEeeCCcC
Confidence 13457788888887755
No 104
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.16 E-value=5.1e-06 Score=66.61 Aligned_cols=88 Identities=26% Similarity=0.320 Sum_probs=62.2
Q ss_pred ccCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCccccccccccccccee
Q 014774 123 ISRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKL 202 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L 202 (419)
+..+++|+.|++.++.......+..+++|+.|++++|.+++. +......+++|++|+++++...+.....
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~--------- 107 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIE--------- 107 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSCCCSHHHHG---------
T ss_pred HhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCcCCChHHHH---------
Confidence 455889999999887654444567889999999999987653 4556677999999999988643211001
Q ss_pred eEecccCceeeecCCCccEEEecCccc
Q 014774 203 DFYGLGNCSLSVSCPKIQFLEVQGCSW 229 (419)
Q Consensus 203 ~~l~~~~~~l~~~~~~L~~L~l~~~~~ 229 (419)
....+++|+.|++++|.+
T Consensus 108 ---------~~~~l~~L~~L~l~~N~l 125 (149)
T 2je0_A 108 ---------PLKKLENLKSLDLFNCEV 125 (149)
T ss_dssp ---------GGGGCTTCCEEECTTCGG
T ss_pred ---------HHhhCCCCCEEeCcCCcc
Confidence 113467888888888765
No 105
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.11 E-value=2.2e-06 Score=70.39 Aligned_cols=129 Identities=19% Similarity=0.144 Sum_probs=75.8
Q ss_pred CCCccEEEecCcccc--CCcc-cccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCccccccccccccccee
Q 014774 126 AKNLESLKLWGVLMV--SSPK-WDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKL 202 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~--~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L 202 (419)
.++|+.|++.++... ..+. +..+++|+.|++++|.+++. ..+..+++|++|++++|...+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~------------ 87 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGL------------ 87 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCC------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHH------------
Confidence 478889999887644 3333 46788899999988886653 34567888888888877543211
Q ss_pred eEecccCceeeecCCCccEEEecCccceeeccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCc--hHHHHHHHh
Q 014774 203 DFYGLGNCSLSVSCPKIQFLEVQGCSWIRVQETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQW--CWDAISKML 280 (419)
Q Consensus 203 ~~l~~~~~~l~~~~~~L~~L~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~l~~l~ 280 (419)
. .....+++|+.|++++|.+..++. + ..+..+++|+.|++++... ........+
T Consensus 88 -----~--~~~~~l~~L~~L~Ls~N~l~~~~~---~--------------~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 143 (168)
T 2ell_A 88 -----D--MLAEKLPNLTHLNLSGNKLKDIST---L--------------EPLKKLECLKSLDLFNCEVTNLNDYRESVF 143 (168)
T ss_dssp -----C--HHHHHCTTCCEEECBSSSCCSSGG---G--------------GGGSSCSCCCEEECCSSGGGTSTTHHHHHH
T ss_pred -----H--HHHhhCCCCCEEeccCCccCcchh---H--------------HHHhcCCCCCEEEeeCCcCcchHHHHHHHH
Confidence 0 111236778888887765422110 0 1234466777777743222 001112345
Q ss_pred ccCCcccEEEeee
Q 014774 281 YWASEVKHLYMKV 293 (419)
Q Consensus 281 ~~~~~L~~L~l~~ 293 (419)
..+|+|+.|++..
T Consensus 144 ~~l~~L~~L~l~~ 156 (168)
T 2ell_A 144 KLLPQLTYLDGYD 156 (168)
T ss_dssp TTCSSCCEETTEE
T ss_pred HhCccCcEecCCC
Confidence 6677777777643
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.09 E-value=5.8e-06 Score=81.44 Aligned_cols=158 Identities=13% Similarity=0.102 Sum_probs=78.8
Q ss_pred CCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEec
Q 014774 127 KNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYG 206 (419)
Q Consensus 127 ~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~ 206 (419)
++|+.|+|+++.....+ ..+++|+.|++++|.++. +.. + ..+|+.|+++++...+-.
T Consensus 80 ~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l--~~~L~~L~Ls~N~l~~lp---------------- 136 (571)
T 3cvr_A 80 PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-L--PASLKHLDVDNNQLTMLP---------------- 136 (571)
T ss_dssp TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-C--CTTCCEEECCSSCCSCCC----------------
T ss_pred CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-h--hcCCCEEECCCCcCCCCC----------------
Confidence 56777777665443333 445667777777666443 111 1 126666666665322100
Q ss_pred ccCceeeecCCCccEEEecCccceeecc-CCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHHHHH----Hhc
Q 014774 207 LGNCSLSVSCPKIQFLEVQGCSWIRVQE-TNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDAISK----MLY 281 (419)
Q Consensus 207 ~~~~~l~~~~~~L~~L~l~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~----l~~ 281 (419)
..+++|+.|++++|.+..++. .++|+.|+++++.-.... .+. ++|+.|++++... ..+.. +..
T Consensus 137 -------~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~lp-~l~--~~L~~L~Ls~N~L--~~lp~~~~~L~~ 204 (571)
T 3cvr_A 137 -------ELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLP-ELP--ESLEALDVSTNLL--ESLPAVPVRNHH 204 (571)
T ss_dssp -------CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC-CCC--TTCCEEECCSSCC--SSCCCCC-----
T ss_pred -------CcCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCCcc-hhh--CCCCEEECcCCCC--CchhhHHHhhhc
Confidence 134566677776666544443 456777777664110001 122 6788888843221 11111 111
Q ss_pred cCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchh
Q 014774 282 WASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMF 330 (419)
Q Consensus 282 ~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 330 (419)
..+.|+.|+++...... + ..-+..+++|+.|++++|.+
T Consensus 205 ~~~~L~~L~Ls~N~l~~------l-----p~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 205 SEETEIFFRCRENRITH------I-----PENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp ---CCEEEECCSSCCCC------C-----CGGGGGSCTTEEEECCSSSC
T ss_pred ccccceEEecCCCccee------c-----CHHHhcCCCCCEEEeeCCcC
Confidence 12223888885422222 1 11123478888888888765
No 107
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.09 E-value=7.9e-06 Score=71.84 Aligned_cols=133 Identities=15% Similarity=0.096 Sum_probs=78.8
Q ss_pred cccCCCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCccccccccccccc
Q 014774 122 CISRAKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQ 199 (419)
Q Consensus 122 ~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~ 199 (419)
.+..+++|++|+|.++.....+ .+..+++|+.|+++++.++... ...+..+++|++|+++++....-. .
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~-~------- 124 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP-LGVFDHLTQLDKLYLGGNQLKSLP-S------- 124 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCC-T-------
T ss_pred HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC-hhHhcccCCCCEEEcCCCcCCCcC-h-------
Confidence 4556889999999987654333 3578899999999999865321 123467899999999987432111 0
Q ss_pred ceeeEecccCceeeecCCCccEEEecCccceeeccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHHHHHH
Q 014774 200 CKLDFYGLGNCSLSVSCPKIQFLEVQGCSWIRVQETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDAISKM 279 (419)
Q Consensus 200 ~~L~~l~~~~~~l~~~~~~L~~L~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l 279 (419)
......++|+.|+++++.+..++. ..++.+++|+.|++++-... ......
T Consensus 125 -----------~~~~~l~~L~~L~Ls~N~l~~~~~------------------~~~~~l~~L~~L~L~~N~l~-~~~~~~ 174 (251)
T 3m19_A 125 -----------GVFDRLTKLKELRLNTNQLQSIPA------------------GAFDKLTNLQTLSLSTNQLQ-SVPHGA 174 (251)
T ss_dssp -----------TTTTTCTTCCEEECCSSCCCCCCT------------------TTTTTCTTCCEEECCSSCCS-CCCTTT
T ss_pred -----------hHhccCCcccEEECcCCcCCccCH------------------HHcCcCcCCCEEECCCCcCC-ccCHHH
Confidence 001245788888888875522211 01234556666666321110 001113
Q ss_pred hccCCcccEEEeee
Q 014774 280 LYWASEVKHLYMKV 293 (419)
Q Consensus 280 ~~~~~~L~~L~l~~ 293 (419)
+..+++|+.|++..
T Consensus 175 ~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 175 FDRLGKLQTITLFG 188 (251)
T ss_dssp TTTCTTCCEEECCS
T ss_pred HhCCCCCCEEEeeC
Confidence 44567777777754
No 108
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.08 E-value=1e-06 Score=70.83 Aligned_cols=58 Identities=19% Similarity=0.113 Sum_probs=39.3
Q ss_pred CCCccEEEecCcccc--CCc-ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCC
Q 014774 126 AKNLESLKLWGVLMV--SSP-KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEG 186 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~--~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~ 186 (419)
.++|+.|++.++... ..+ .+..+++|+.|++++|.+++. ..+..+++|+.|+++++..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i 76 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRV 76 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcc
Confidence 467888888877543 233 346778888888888876543 3356677788888777643
No 109
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.07 E-value=5e-07 Score=84.44 Aligned_cols=59 Identities=24% Similarity=0.211 Sum_probs=35.2
Q ss_pred CCCccEEEecCccccCCc--cc-----ccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCC
Q 014774 126 AKNLESLKLWGVLMVSSP--KW-----DVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGC 184 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~-----~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c 184 (419)
.++|++|+|+++...... .+ ...++|+.|+|++|.+++.++..+...+++|++|++++|
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n 136 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN 136 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence 356666666665432211 11 123567777777777776666666666667777777766
No 110
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.03 E-value=3.1e-05 Score=77.52 Aligned_cols=196 Identities=16% Similarity=0.054 Sum_probs=94.6
Q ss_pred ccCCCccEEEecCeeeChH-HHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEecccCce--------eeecC
Q 014774 146 DVFHKLQNLEIVGARLEDP-ALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCS--------LSVSC 216 (419)
Q Consensus 146 ~~~~~L~~L~L~~~~~~~~-~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~--------l~~~~ 216 (419)
..+++|+.|+++++.+... ........+++|+.+++..+...... ........++.+.+..+. .....
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~---~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l 444 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS---SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 444 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC---SCCTTCTTCCEEECTTSEEESTTSSCTTTTC
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhcccccccccc---ccccccccccchhhhhccccccccccccccc
Confidence 4566777777776653211 11122345667777777655432211 001111233333332221 12334
Q ss_pred CCccEEEecCccceee-----ccCCcCceeEeeccc--ceEEEeccCCCCCcCEeeeCCCCchHHHHHHHhccCCcccEE
Q 014774 217 PKIQFLEVQGCSWIRV-----QETNCLRNLSISNNA--GRVYMVDFGKLAALESLTLRGVQWCWDAISKMLYWASEVKHL 289 (419)
Q Consensus 217 ~~L~~L~l~~~~~~~l-----~~~~~L~~L~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~~L 289 (419)
+.++.++++.+.+..+ ...+.++.|.++++. .......+..+++|+.|++++.... ......+..+++|+.|
T Consensus 445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~-~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVL 523 (635)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccC-CcChHHHcCCCCCCEE
Confidence 5677777766655322 125667777776541 1122223455778888888442210 0112235567788888
Q ss_pred EeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeeccCC
Q 014774 290 YMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRSP 361 (419)
Q Consensus 290 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~ 361 (419)
+++...... + . ...+..+++|+.|++++|.+..+-. ..+.. ..++|+.|++++.+.
T Consensus 524 ~Ls~N~l~~---l------~-~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~-----l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 524 NMSHNNFFS---L------D-TFPYKCLNSLQVLDYSLNHIMTSKK-QELQH-----FPSSLAFLNLTQNDF 579 (635)
T ss_dssp ECTTSCCCB---C------C-CGGGTTCTTCCEEECTTSCCCBCCS-SCTTC-----CCTTCCEEECTTCCB
T ss_pred ECCCCcCCC---C------C-hhHHhCCCCCCEEECCCCcCCCCCH-HHHHh-----hhCcCCEEEeeCCCC
Confidence 885422211 0 0 1124566788888888765532200 01111 125688888866543
No 111
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.02 E-value=1.7e-05 Score=73.46 Aligned_cols=216 Identities=14% Similarity=0.115 Sum_probs=118.2
Q ss_pred HHHHHHHh--CCCcceEEEe-cCCC-cc---hHHHHHHH--hcCCceEEEEEecCccccccccCCCccccc-ccCCCCcc
Q 014774 61 IVLKMIYS--IVCLEELVVY-TPFS-KA---GLDSWLML--AGSTLKHLELRMDNLADYQGCLENPSKLDC-ISRAKNLE 130 (419)
Q Consensus 61 ~~~~~l~~--~~~L~~l~l~-~~~~-~~---~~~~w~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~-l~~~~~L~ 130 (419)
.+.+++.. ..+++.|.+. ..++ .. .+..+..+ ..++|+.|.+.................+.. +..+|+|+
T Consensus 96 ~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~ 175 (362)
T 2ra8_A 96 LMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLN 175 (362)
T ss_dssp HHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCC
T ss_pred HHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCc
Confidence 33444544 3457788873 2232 11 12222211 237899997753211100001111122333 44589999
Q ss_pred EEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHh-cCCCCcEEEccCCCC--cccccccccccccceeeEecc
Q 014774 131 SLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALR-ACPNLTNLLLLGCEG--VRSVSIELPHLEQCKLDFYGL 207 (419)
Q Consensus 131 ~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~-~~p~L~~L~l~~c~~--~~~~~~~~~~l~~~~L~~l~~ 207 (419)
+|.|.++.....+.+ ..++|+.|+|..+.+++..+..+.. .+|+|++|+++.+.. ..+.++..+... +
T Consensus 176 ~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~--------l 246 (362)
T 2ra8_A 176 NLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL--------F 246 (362)
T ss_dssp EEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG--------S
T ss_pred EEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH--------H
Confidence 999988743333332 4899999999999999988888764 799999999964321 122222211100 0
Q ss_pred cCceeeecCCCccEEEecCccce-----ee---ccCCcCceeEeeccc----ceEE-EeccCCCCCcCEeeeCC--CCch
Q 014774 208 GNCSLSVSCPKIQFLEVQGCSWI-----RV---QETNCLRNLSISNNA----GRVY-MVDFGKLAALESLTLRG--VQWC 272 (419)
Q Consensus 208 ~~~~l~~~~~~L~~L~l~~~~~~-----~l---~~~~~L~~L~l~~~~----~~~~-~~~~~~~~~L~~L~l~~--~~~~ 272 (419)
. ...+|+|+.|++.+|.+. .+ +.++.|+.|+++.+. |... ...+..+++|++|++++ +++
T Consensus 247 ~----~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d- 321 (362)
T 2ra8_A 247 S----KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD- 321 (362)
T ss_dssp C----TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH-
T ss_pred h----cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH-
Confidence 0 123688888888776541 11 236788888887641 1000 00123478999999943 444
Q ss_pred HHHHHHHhccCCcccEEEeee
Q 014774 273 WDAISKMLYWASEVKHLYMKV 293 (419)
Q Consensus 273 ~~~l~~l~~~~~~L~~L~l~~ 293 (419)
..+..+.+.+ ...++++.
T Consensus 322 -~~~~~l~~al--g~~~~~~~ 339 (362)
T 2ra8_A 322 -EMKKELQKSL--PMKIDVSD 339 (362)
T ss_dssp -HHHHHHHHHC--CSEEECCS
T ss_pred -HHHHHHHHHc--CCEEEecC
Confidence 5555554433 34566654
No 112
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.00 E-value=3.7e-06 Score=74.57 Aligned_cols=35 Identities=29% Similarity=0.698 Sum_probs=33.2
Q ss_pred CCCCcHHHHHHHHhCCCCHHHHH-HhhccchhHHHhh
Q 014774 1 MDSLPDAIVQYILSHMKNARDVA-LCNCVSKRWKESI 36 (419)
Q Consensus 1 ~~~LPd~ll~~I~~~L~~~~~~~-~~~~vsk~w~~~~ 36 (419)
++.||+|++..||+||| .++++ +|++|||+|+.+.
T Consensus 51 ~~~LP~ell~~Il~~Lp-~~~L~~r~~~VCk~Wr~l~ 86 (297)
T 2e31_A 51 LAELPEPLLLRVLAELP-ATELVQACRLVCLRWKELV 86 (297)
T ss_dssp TTSSCHHHHHHHHHTSC-HHHHHHTGGGTCHHHHHHH
T ss_pred hhhCCHHHHHHHHHcCC-HHHHHHHHHHHhHHHHHHh
Confidence 56899999999999999 99999 9999999999986
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.94 E-value=1.8e-05 Score=67.35 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=40.5
Q ss_pred CCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCC
Q 014774 126 AKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCE 185 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~ 185 (419)
.++|++|++.++.....+ .+..+++|+.|+++++.++... ...+..+++|++|+++++.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC-hhhcCCCCCcCEEECCCCc
Confidence 568888988887544333 2467888999999888755311 1234568888888888774
No 114
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.90 E-value=4.9e-06 Score=83.39 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=84.3
Q ss_pred cCCCccEEEecCcccee------eccCCcCceeEeecccceEEE-eccCCCCCcCEeeeCCCCchHHHHHHHhccCCccc
Q 014774 215 SCPKIQFLEVQGCSWIR------VQETNCLRNLSISNNAGRVYM-VDFGKLAALESLTLRGVQWCWDAISKMLYWASEVK 287 (419)
Q Consensus 215 ~~~~L~~L~l~~~~~~~------l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~l~~l~~~~~~L~ 287 (419)
..+.|+.+++.++.... +.....++.+.++.+.-.... .....++.|+.|++++...........+..+++|+
T Consensus 418 ~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~ 497 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 497 (635)
T ss_dssp TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccC
Confidence 34556666655443311 112444555555442111111 12334677888887543210011223455677888
Q ss_pred EEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhcccccccccccccccccceeeeccCCCCchhh
Q 014774 288 HLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLEEVVVTVRSPLNAEQK 367 (419)
Q Consensus 288 ~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~ 367 (419)
.|+++...... + ....+.++++|+.|++++|.+..+-. ..+ ..+++|+.|+++++. ++.
T Consensus 498 ~L~Ls~N~L~~---l-------~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~------~~l~~L~~L~Ls~N~-l~~--- 556 (635)
T 4g8a_A 498 FLDLSQCQLEQ---L-------SPTAFNSLSSLQVLNMSHNNFFSLDT-FPY------KCLNSLQVLDYSLNH-IMT--- 556 (635)
T ss_dssp EEECTTSCCCE---E-------CTTTTTTCTTCCEEECTTSCCCBCCC-GGG------TTCTTCCEEECTTSC-CCB---
T ss_pred EEECCCCccCC---c-------ChHHHcCCCCCCEEECCCCcCCCCCh-hHH------hCCCCCCEEECCCCc-CCC---
Confidence 88885421211 0 01224567889999998876532200 001 135899999998754 331
Q ss_pred hhhHHhhhhcc-cchhhHHHHhhhhccCCCchhHHHH
Q 014774 368 MSTLESLLKYG-KNLKTMVIRILQMKSSHSSSDDFFD 403 (419)
Q Consensus 368 ~~~l~~ll~~~-~~L~~L~i~~~~~~~~~~~~~~~~~ 403 (419)
..+..+... ++|+.|.+..+++. |-+....|.+
T Consensus 557 --~~~~~l~~l~~~L~~L~L~~Np~~-C~C~~~~~~~ 590 (635)
T 4g8a_A 557 --SKKQELQHFPSSLAFLNLTQNDFA-CTCEHQSFLQ 590 (635)
T ss_dssp --CCSSCTTCCCTTCCEEECTTCCBC-CSGGGHHHHH
T ss_pred --CCHHHHHhhhCcCCEEEeeCCCCc-ccCCcHHHHH
Confidence 122234444 57999999888876 3333334443
No 115
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.90 E-value=2.1e-06 Score=79.67 Aligned_cols=61 Identities=13% Similarity=0.183 Sum_probs=32.0
Q ss_pred CCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCC
Q 014774 126 AKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEG 186 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~ 186 (419)
.+++++|+|++......+ .+..+++|+.|+|+++.+....-...+.++++|.++...++..
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 357777777765443322 3566777777777776532100001234556666555544433
No 116
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.90 E-value=3.6e-06 Score=73.74 Aligned_cols=35 Identities=26% Similarity=0.563 Sum_probs=32.8
Q ss_pred CCCCcHHHHHHHHhCCCCHHHHHHhhccchhHHHhh
Q 014774 1 MDSLPDAIVQYILSHMKNARDVALCNCVSKRWKESI 36 (419)
Q Consensus 1 ~~~LPd~ll~~I~~~L~~~~~~~~~~~vsk~w~~~~ 36 (419)
|+.||+|++.+||+||+ .+|+++++.|||+||.+.
T Consensus 5 l~~LP~ei~l~IlsfL~-p~DL~~l~~vcr~Wr~la 39 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLS-PHDLCQLGSTNHYWNETV 39 (312)
T ss_dssp HHHSCHHHHHHHHHTSC-HHHHHHHHTTCHHHHHHH
T ss_pred hHhCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHh
Confidence 35799999999999999 999999999999999976
No 117
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.85 E-value=3.5e-06 Score=78.71 Aligned_cols=161 Identities=16% Similarity=0.207 Sum_probs=87.5
Q ss_pred ccCCCccEEEecCeeeChHHHHHHHh----cCCCCcEEEccCCCCcccccccccccccceeeEecccCceeeecCCCccE
Q 014774 146 DVFHKLQNLEIVGARLEDPALSTALR----ACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSLSVSCPKIQF 221 (419)
Q Consensus 146 ~~~~~L~~L~L~~~~~~~~~l~~l~~----~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l~~~~~~L~~ 221 (419)
...+.|+.|+|++|.+++.....+.. .+++|++|++++|. +++.++....-.. ++|+.
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L-----------------~~L~~ 130 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVF-----------------LRARK 130 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHH-----------------HTEEE
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHH-----------------HhccH
Confidence 34678999999999988766555443 34799999999985 4444333222111 23444
Q ss_pred EEecCccce-----ee-----ccCCcCceeEeeccc----ceE-EEeccCCCCCcCEeeeCC--CCch-HHHHHHHhccC
Q 014774 222 LEVQGCSWI-----RV-----QETNCLRNLSISNNA----GRV-YMVDFGKLAALESLTLRG--VQWC-WDAISKMLYWA 283 (419)
Q Consensus 222 L~l~~~~~~-----~l-----~~~~~L~~L~l~~~~----~~~-~~~~~~~~~~L~~L~l~~--~~~~-~~~l~~l~~~~ 283 (419)
|++++|.+. .+ ...+.|+.|+++++. +.. ....+..+++|++|++++ +++. ...+...+..+
T Consensus 131 L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~ 210 (372)
T 3un9_A 131 LGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRN 210 (372)
T ss_dssp EECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGC
T ss_pred hhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcC
Confidence 444444330 01 113445555554431 000 000123467788888844 3331 12244456667
Q ss_pred CcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchh
Q 014774 284 SEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMF 330 (419)
Q Consensus 284 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 330 (419)
++|++|+++....++ .+. ..+...+...++|+.|++++|.+
T Consensus 211 ~~L~~L~Ls~N~i~~-~g~-----~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 211 RQLQELNVAYNGAGD-TAA-----LALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp SCCCEEECCSSCCCH-HHH-----HHHHHHHHHCSSCCEEECTTSSC
T ss_pred CCcCeEECCCCCCCH-HHH-----HHHHHHHHhCCCCCEEeccCCCC
Confidence 788888886533333 111 11233344668888888887764
No 118
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.82 E-value=2.5e-05 Score=72.35 Aligned_cols=38 Identities=32% Similarity=0.359 Sum_probs=24.9
Q ss_pred cCCCccEEEecCeee--------ChHHHHHHHhcCCCCcEEEccCC
Q 014774 147 VFHKLQNLEIVGARL--------EDPALSTALRACPNLTNLLLLGC 184 (419)
Q Consensus 147 ~~~~L~~L~L~~~~~--------~~~~l~~l~~~~p~L~~L~l~~c 184 (419)
.+++|+.|.+..... ....+..++..+|+|++|.+.++
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGT 182 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECC
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCC
Confidence 456777777754321 11235567788889999998876
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.82 E-value=1e-05 Score=66.88 Aligned_cols=56 Identities=13% Similarity=0.141 Sum_probs=24.9
Q ss_pred CCCccEEEecCccccCCcccccC-CCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCC
Q 014774 126 AKNLESLKLWGVLMVSSPKWDVF-HKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGC 184 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c 184 (419)
+++|+.|++.++.....+.+..+ ++|+.|+++++.+++- ..+..+++|+.|+++++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N 74 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNN 74 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSS
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCC
Confidence 44555555555433222222222 2555555555554321 12334555555555544
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.74 E-value=6.4e-05 Score=64.97 Aligned_cols=84 Identities=15% Similarity=0.020 Sum_probs=53.6
Q ss_pred CCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceee
Q 014774 126 AKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLD 203 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~ 203 (419)
.++|+.|+|+++...... .+..+++|+.|+|+++.++.-. ...+..+++|+.|+++++....-..
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~------------ 105 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVLPS------------ 105 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT------------
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCccCh------------
Confidence 578999999887644332 3567888999999988754211 1234678888899888774321110
Q ss_pred EecccCceeeecCCCccEEEecCccc
Q 014774 204 FYGLGNCSLSVSCPKIQFLEVQGCSW 229 (419)
Q Consensus 204 ~l~~~~~~l~~~~~~L~~L~l~~~~~ 229 (419)
......++|+.|+++++.+
T Consensus 106 -------~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 106 -------AVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp -------TTTTTCTTCCEEECCSSCC
T ss_pred -------hHhCcchhhCeEeccCCcc
Confidence 0012457777888877755
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.73 E-value=4.5e-05 Score=75.07 Aligned_cols=169 Identities=15% Similarity=0.068 Sum_probs=95.2
Q ss_pred CCcceEEEec-CCCcchHHHHHHHhcCCceEEEEEecCccccccccCCCcccccccCCCCccEEEecCccccCCcccccC
Q 014774 70 VCLEELVVYT-PFSKAGLDSWLMLAGSTLKHLELRMDNLADYQGCLENPSKLDCISRAKNLESLKLWGVLMVSSPKWDVF 148 (419)
Q Consensus 70 ~~L~~l~l~~-~~~~~~~~~w~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~~~~~~~ 148 (419)
.+++.+.++. .... ++..+ .++|+.|+++..... .+. ..+++|+.|+++++.....+.+ .
T Consensus 59 ~~L~~L~Ls~n~L~~--lp~~l---~~~L~~L~Ls~N~l~----------~ip--~~l~~L~~L~Ls~N~l~~ip~l--~ 119 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS--LPDNL---PPQITVLEITQNALI----------SLP--ELPASLEYLDACDNRLSTLPEL--P 119 (571)
T ss_dssp TTCSEEECCSSCCSC--CCSCC---CTTCSEEECCSSCCS----------CCC--CCCTTCCEEECCSSCCSCCCCC--C
T ss_pred CCccEEEeCCCCCCc--cCHhH---cCCCCEEECcCCCCc----------ccc--cccCCCCEEEccCCCCCCcchh--h
Confidence 4788888843 3332 22211 256888877643322 122 3378999999998765444442 2
Q ss_pred CCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEecccCceeee---cCCCccEEEec
Q 014774 149 HKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSLSV---SCPKIQFLEVQ 225 (419)
Q Consensus 149 ~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l~~---~~~~L~~L~l~ 225 (419)
.+|+.|++++|.++. +.. .+++|+.|+++++...+-. . ...+|+.++++++.+.. -.++|+.|+++
T Consensus 120 ~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~lp---~---~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls 188 (571)
T 3cvr_A 120 ASLKHLDVDNNQLTM--LPE---LPALLEYINADNNQLTMLP---E---LPTSLEVLSVRNNQLTFLPELPESLEALDVS 188 (571)
T ss_dssp TTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSCCC---C---CCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred cCCCEEECCCCcCCC--CCC---cCccccEEeCCCCccCcCC---C---cCCCcCEEECCCCCCCCcchhhCCCCEEECc
Confidence 399999999998664 222 6899999999988643211 1 12355556555443211 11677777777
Q ss_pred Cccceeecc-CCcC-------ceeEeecccceEEEeccCCCCCcCEeeeCC
Q 014774 226 GCSWIRVQE-TNCL-------RNLSISNNAGRVYMVDFGKLAALESLTLRG 268 (419)
Q Consensus 226 ~~~~~~l~~-~~~L-------~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 268 (419)
+|.+..++. ..+| +.|+++++.-......+..+++|+.|++++
T Consensus 189 ~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 189 TNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILED 239 (571)
T ss_dssp SSCCSSCCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCS
T ss_pred CCCCCchhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeC
Confidence 776543333 1244 666665531111111233466666666633
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.71 E-value=2.8e-05 Score=72.37 Aligned_cols=59 Identities=19% Similarity=0.046 Sum_probs=35.6
Q ss_pred CCCccEEEecCccccCCc--ccc-cCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCC
Q 014774 126 AKNLESLKLWGVLMVSSP--KWD-VFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCE 185 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~~-~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~ 185 (419)
.++++.|+|+++.....+ .+. .+++|+.|+|+++.++...- ..+..+++|+.|+++++.
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCc
Confidence 456778888776433222 233 67788888888776442110 123567778888877664
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.66 E-value=1.9e-05 Score=65.27 Aligned_cols=137 Identities=11% Similarity=0.048 Sum_probs=76.6
Q ss_pred ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEecccCceeeecCCCccEEE
Q 014774 144 KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSLSVSCPKIQFLE 223 (419)
Q Consensus 144 ~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l~~~~~~L~~L~ 223 (419)
.+..+++|+.|+++++.++. +..+....|+|+.|+++++...+- . . ...+++|+.|+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~---~-----------------~-l~~l~~L~~L~ 70 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL---D-----------------G-FPLLRRLKTLL 70 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSSCCCEE---C-----------------C-CCCCSSCCEEE
T ss_pred hcCCcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCCCCCcc---c-----------------c-cccCCCCCEEE
Confidence 34567888888888887653 233444455888888887643211 0 0 12456777777
Q ss_pred ecCccceeeccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHHHHH--HhccCCcccEEEeeeeecCCCCC
Q 014774 224 VQGCSWIRVQETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDAISK--MLYWASEVKHLYMKVEFTGDFDT 301 (419)
Q Consensus 224 l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~--l~~~~~~L~~L~l~~~~~~~~~~ 301 (419)
++++.+..++. ..+..+++|+.|++++-.. ..+.. .+..+++|+.|.+.........
T Consensus 71 Ls~N~l~~~~~------------------~~~~~l~~L~~L~L~~N~i--~~~~~~~~l~~l~~L~~L~l~~N~i~~~~- 129 (176)
T 1a9n_A 71 VNNNRICRIGE------------------GLDQALPDLTELILTNNSL--VELGDLDPLASLKSLTYLCILRNPVTNKK- 129 (176)
T ss_dssp CCSSCCCEECS------------------CHHHHCTTCCEEECCSCCC--CCGGGGGGGGGCTTCCEEECCSSGGGGST-
T ss_pred CCCCcccccCc------------------chhhcCCCCCEEECCCCcC--CcchhhHhhhcCCCCCEEEecCCCCCCcH-
Confidence 77765422211 0013466777777743221 11111 3556888888888652222201
Q ss_pred CcCCCCcCHHHHhhcCCCeeEEEecCchh
Q 014774 302 LQPFPEVDFVEFFNNHPKLQKFDIHGAMF 330 (419)
Q Consensus 302 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 330 (419)
......+..+|+|+.|+++++..
T Consensus 130 ------~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 130 ------HYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ------THHHHHHHHCTTCSEETTEECCH
T ss_pred ------hHHHHHHHHCCccceeCCCcCCH
Confidence 00123466788899998887654
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.63 E-value=0.00012 Score=62.81 Aligned_cols=84 Identities=17% Similarity=0.264 Sum_probs=52.2
Q ss_pred CCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceee
Q 014774 126 AKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLD 203 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~ 203 (419)
.++|+.|++.++.....+ .+..+++|+.|+|+++.++... ...+.++++|+.|+++++....-..
T Consensus 31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~------------ 97 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPK------------ 97 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCCCCCT------------
T ss_pred CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCCccCH------------
Confidence 468888888876543322 4567888999999888754311 1224567888888888764321110
Q ss_pred EecccCceeeecCCCccEEEecCccc
Q 014774 204 FYGLGNCSLSVSCPKIQFLEVQGCSW 229 (419)
Q Consensus 204 ~l~~~~~~l~~~~~~L~~L~l~~~~~ 229 (419)
.....+++|+.|+++++.+
T Consensus 98 -------~~f~~l~~L~~L~L~~N~l 116 (220)
T 2v9t_B 98 -------SLFEGLFSLQLLLLNANKI 116 (220)
T ss_dssp -------TTTTTCTTCCEEECCSSCC
T ss_pred -------hHccCCCCCCEEECCCCCC
Confidence 0012457777787777654
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.62 E-value=2.5e-05 Score=71.58 Aligned_cols=88 Identities=10% Similarity=0.020 Sum_probs=48.7
Q ss_pred HHHHhccCCcccEEEeee---eecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhHhhhhccccccccccccccccc
Q 014774 276 ISKMLYWASEVKHLYMKV---EFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFAALCQKNSLKNVESGFVIPCLE 352 (419)
Q Consensus 276 l~~l~~~~~~L~~L~l~~---~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~l~~l~~~~~~p~L~ 352 (419)
...+...|++|+.+.+.. ..+++ ..+.++++|+.+.+.++. ..+ ... .-..|++|+
T Consensus 218 ~~~l~~~~~~L~~l~L~~n~i~~I~~-------------~aF~~~~~L~~l~l~~ni-~~I-~~~------aF~~~~~L~ 276 (329)
T 3sb4_A 218 FKLIRDYMPNLVSLDISKTNATTIPD-------------FTFAQKKYLLKIKLPHNL-KTI-GQR------VFSNCGRLA 276 (329)
T ss_dssp HHHHHHHCTTCCEEECTTBCCCEECT-------------TTTTTCTTCCEEECCTTC-CEE-CTT------TTTTCTTCC
T ss_pred HHHHHHhcCCCeEEECCCCCcceecH-------------hhhhCCCCCCEEECCccc-cee-hHH------HhhCChhcc
Confidence 344445688888888843 22222 124567888888887541 111 000 011367787
Q ss_pred -ceeeeccCCCCchhhhhhHHhhhhcccchhhHHHHhhhh
Q 014774 353 -EVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIRILQM 391 (419)
Q Consensus 353 -~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~~ 391 (419)
.+.+.. .++. .-...+..|++|+.+.+..+.+
T Consensus 277 ~~l~l~~--~l~~-----I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 277 GTLELPA--SVTA-----IEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp EEEEECT--TCCE-----ECTTTTTTCTTEEEEEECSSCC
T ss_pred EEEEEcc--cceE-----EchhhhhCCccCCEEEeCCCcc
Confidence 887764 3331 1134467788888888754444
No 126
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.62 E-value=0.0001 Score=63.69 Aligned_cols=106 Identities=14% Similarity=0.121 Sum_probs=68.7
Q ss_pred CCceEEEEEecCccccccccCCCcccccccCCCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhc
Q 014774 95 STLKHLELRMDNLADYQGCLENPSKLDCISRAKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRA 172 (419)
Q Consensus 95 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~ 172 (419)
+.++.|+++..... ......+..+++|++|+|.++.....+ .+..+++|+.|+|+++.++... ...+..
T Consensus 40 ~~L~~L~Ls~n~i~--------~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~ 110 (229)
T 3e6j_A 40 TNAQILYLHDNQIT--------KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP-SAVFDR 110 (229)
T ss_dssp TTCSEEECCSSCCC--------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTT
T ss_pred CCCCEEEcCCCccC--------ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC-hhHhCc
Confidence 56777766644322 111133555789999999987654443 3578899999999999865311 123467
Q ss_pred CCCCcEEEccCCCCcccccccccccccceeeEecccCceeeecCCCccEEEecCccc
Q 014774 173 CPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSLSVSCPKIQFLEVQGCSW 229 (419)
Q Consensus 173 ~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l~~~~~~L~~L~l~~~~~ 229 (419)
+++|+.|+++++....-. . . ....++|+.|+++++.+
T Consensus 111 l~~L~~L~Ls~N~l~~lp-----------------~--~-~~~l~~L~~L~L~~N~l 147 (229)
T 3e6j_A 111 LVHLKELFMCCNKLTELP-----------------R--G-IERLTHLTHLALDQNQL 147 (229)
T ss_dssp CTTCCEEECCSSCCCSCC-----------------T--T-GGGCTTCSEEECCSSCC
T ss_pred chhhCeEeccCCcccccC-----------------c--c-cccCCCCCEEECCCCcC
Confidence 899999999887533110 0 0 13567888888888755
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.62 E-value=0.00032 Score=64.18 Aligned_cols=177 Identities=16% Similarity=0.155 Sum_probs=100.3
Q ss_pred CCCccEEEecCcc-ccCCcccccCCCccEEEecCee---eChHHHHHHHhcCCCCcEEEccC-----------------C
Q 014774 126 AKNLESLKLWGVL-MVSSPKWDVFHKLQNLEIVGAR---LEDPALSTALRACPNLTNLLLLG-----------------C 184 (419)
Q Consensus 126 ~~~L~~L~L~~~~-~~~~~~~~~~~~L~~L~L~~~~---~~~~~l~~l~~~~p~L~~L~l~~-----------------c 184 (419)
|++|++|.|.+.. .+.+..+..|++|+.+++.++. +.+..+ ..|.++..+.... |
T Consensus 100 ~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF----~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEAL----ADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp CTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSS----CTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cCCCcEEECCccccchhHHHhhcCcccceEEcCCCCccccchhhh----cCCCceEEecCcchhhhhccccccccccccc
Confidence 8999999997622 2333356889999999998875 444333 3466666665433 1
Q ss_pred CCcc------------c----ccccccccccceeeEec-ccCc---eeeecCCCccEEEecCccceeec-----cCCcCc
Q 014774 185 EGVR------------S----VSIELPHLEQCKLDFYG-LGNC---SLSVSCPKIQFLEVQGCSWIRVQ-----ETNCLR 239 (419)
Q Consensus 185 ~~~~------------~----~~~~~~~l~~~~L~~l~-~~~~---~l~~~~~~L~~L~l~~~~~~~l~-----~~~~L~ 239 (419)
..+. . ..+....+. .+..-+ +... .+...+++|+.+++.++.+..++ .+.+|+
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~--~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~ 253 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDIN--FLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLL 253 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCS--EEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCC
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccc--eEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCC
Confidence 1111 0 000011111 222211 1100 11124789999999987765554 378899
Q ss_pred eeEeecccceEEEeccCCCCCcC-EeeeCC-CCchHHHHHHHhccCCcccEEEeee---eecCCCCCCcCCCCcCHHHHh
Q 014774 240 NLSISNNAGRVYMVDFGKLAALE-SLTLRG-VQWCWDAISKMLYWASEVKHLYMKV---EFTGDFDTLQPFPEVDFVEFF 314 (419)
Q Consensus 240 ~L~l~~~~~~~~~~~~~~~~~L~-~L~l~~-~~~~~~~l~~l~~~~~~L~~L~l~~---~~~~~~~~l~~~~~~~~~~~~ 314 (419)
.+.+.+.-..+......++++|+ .+++.+ ++.- -...+..|++|+.+.+.. ...+. ..+
T Consensus 254 ~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~~l~~I---~~~aF~~c~~L~~l~l~~n~i~~I~~-------------~aF 317 (329)
T 3sb4_A 254 KIKLPHNLKTIGQRVFSNCGRLAGTLELPASVTAI---EFGAFMGCDNLRYVLATGDKITTLGD-------------ELF 317 (329)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEEEECTTCCEE---CTTTTTTCTTEEEEEECSSCCCEECT-------------TTT
T ss_pred EEECCcccceehHHHhhCChhccEEEEEcccceEE---chhhhhCCccCCEEEeCCCccCccch-------------hhh
Confidence 99887631111122345688999 999943 3320 012467899999999943 23333 124
Q ss_pred hcCCCeeEEE
Q 014774 315 NNHPKLQKFD 324 (419)
Q Consensus 315 ~~~~~L~~L~ 324 (419)
.++++|+.+.
T Consensus 318 ~~~~~L~~ly 327 (329)
T 3sb4_A 318 GNGVPSKLIY 327 (329)
T ss_dssp CTTCCCCEEE
T ss_pred cCCcchhhhc
Confidence 6788898875
No 128
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=97.61 E-value=0.00014 Score=61.64 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=57.3
Q ss_pred ccCCCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccc
Q 014774 123 ISRAKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQC 200 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~ 200 (419)
+..+++|++|++.++.....+ .+..+++|+.|+++++.++... ...+..+++|++|+++++.......
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~--------- 117 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP-NGVFDKLTQLKELALNTNQLQSLPD--------- 117 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT---------
T ss_pred hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC-HhHhcCccCCCEEEcCCCcCcccCH---------
Confidence 455889999999887554433 2467899999999998865311 1234678999999998774321110
Q ss_pred eeeEecccCceeeecCCCccEEEecCccc
Q 014774 201 KLDFYGLGNCSLSVSCPKIQFLEVQGCSW 229 (419)
Q Consensus 201 ~L~~l~~~~~~l~~~~~~L~~L~l~~~~~ 229 (419)
......++|+.|+++++.+
T Consensus 118 ----------~~~~~l~~L~~L~l~~N~l 136 (208)
T 2o6s_A 118 ----------GVFDKLTQLKDLRLYQNQL 136 (208)
T ss_dssp ----------TTTTTCTTCCEEECCSSCC
T ss_pred ----------hHhccCCcCCEEECCCCcc
Confidence 0012457788888877654
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.51 E-value=0.00014 Score=62.33 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=59.1
Q ss_pred cccCCCCccEEEecCccccCC--cccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCccccccccccccc
Q 014774 122 CISRAKNLESLKLWGVLMVSS--PKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQ 199 (419)
Q Consensus 122 ~l~~~~~L~~L~L~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~ 199 (419)
.+..+++|+.|+|+++..... ..+..+++|+.|+|+++.++.-. ..++..+++|+.|+++++....... .
T Consensus 51 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~~-~------ 122 (220)
T 2v9t_B 51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP-KSLFEGLFSLQLLLLNANKINCLRV-D------ 122 (220)
T ss_dssp SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT-T------
T ss_pred HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC-HhHccCCCCCCEEECCCCCCCEeCH-H------
Confidence 345578999999988754332 25678899999999999865211 1234678999999999875432110 0
Q ss_pred ceeeEecccCceeeecCCCccEEEecCccc
Q 014774 200 CKLDFYGLGNCSLSVSCPKIQFLEVQGCSW 229 (419)
Q Consensus 200 ~~L~~l~~~~~~l~~~~~~L~~L~l~~~~~ 229 (419)
....+++|+.|+++++.+
T Consensus 123 ------------~~~~l~~L~~L~L~~N~l 140 (220)
T 2v9t_B 123 ------------AFQDLHNLNLLSLYDNKL 140 (220)
T ss_dssp ------------TTTTCTTCCEEECCSSCC
T ss_pred ------------HcCCCCCCCEEECCCCcC
Confidence 012457888888888755
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.50 E-value=9.2e-05 Score=63.54 Aligned_cols=57 Identities=12% Similarity=0.222 Sum_probs=25.0
Q ss_pred CCccEEEecCccccCC-c--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCC
Q 014774 127 KNLESLKLWGVLMVSS-P--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGC 184 (419)
Q Consensus 127 ~~L~~L~L~~~~~~~~-~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c 184 (419)
+.++.|+|.++..... + .+..+++|+.|+|+++.++... ...+.++++|++|+++++
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCC
Confidence 3455566555432221 1 1345555555555555433210 011234455555555544
No 131
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.45 E-value=0.0003 Score=60.33 Aligned_cols=124 Identities=10% Similarity=0.055 Sum_probs=55.1
Q ss_pred CCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEecccCceeeecCCCccEEEecCcc
Q 014774 149 HKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSLSVSCPKIQFLEVQGCS 228 (419)
Q Consensus 149 ~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l~~~~~~L~~L~l~~~~ 228 (419)
+.++.|+|+++.++...-...+..+++|+.|+++++...+... . ....+++|+.|+++++.
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~-~------------------~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE-G------------------AFEGASGVNEILLTSNR 92 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT-T------------------TTTTCTTCCEEECCSSC
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH-H------------------HhCCCCCCCEEECCCCc
Confidence 4456666666664332111123456667777766553221110 0 00123455555555554
Q ss_pred cee-----eccCCcCceeEeecccce-EEEeccCCCCCcCEeeeCCCCchHHHH-HHHhccCCcccEEEeee
Q 014774 229 WIR-----VQETNCLRNLSISNNAGR-VYMVDFGKLAALESLTLRGVQWCWDAI-SKMLYWASEVKHLYMKV 293 (419)
Q Consensus 229 ~~~-----l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~l-~~l~~~~~~L~~L~l~~ 293 (419)
+.. +..+++|+.|+++++.-. .....+.++++|+.|++++-.. ..+ ...+..+++|+.|++..
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI--TTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC--CCBCTTTTTTCTTCCEEECCS
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC--CEECHHHhcCCCCCCEEEecC
Confidence 422 222455555555543100 0011234456666666632111 111 12344567777777754
No 132
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.41 E-value=0.00014 Score=60.54 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=46.5
Q ss_pred ccCCCCccEEEecCc-cccCCc------ccccCCCccEEEecCeeeChHHHHHH---HhcCCCCcEEEccCCCCccccc
Q 014774 123 ISRAKNLESLKLWGV-LMVSSP------KWDVFHKLQNLEIVGARLEDPALSTA---LRACPNLTNLLLLGCEGVRSVS 191 (419)
Q Consensus 123 l~~~~~L~~L~L~~~-~~~~~~------~~~~~~~L~~L~L~~~~~~~~~l~~l---~~~~p~L~~L~l~~c~~~~~~~ 191 (419)
+..+++|++|+|+++ ...+.. .....++|+.|+|++|.+++++...+ +...++|++|++++|. +++.+
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSG 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHH
Confidence 344788888888887 432221 12556889999999988888765544 4567888999998774 44443
No 133
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.40 E-value=4.7e-05 Score=72.99 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=32.5
Q ss_pred CCCcHHHHHHHHhCCCCHHHHHHhhccchhHHHhhc
Q 014774 2 DSLPDAIVQYILSHMKNARDVALCNCVSKRWKESIP 37 (419)
Q Consensus 2 ~~LPd~ll~~I~~~L~~~~~~~~~~~vsk~w~~~~~ 37 (419)
+.||+|++.+||+||+ .++++++++|||+|+.+..
T Consensus 16 ~~lp~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~ 50 (464)
T 3v7d_B 16 TSLPFEISLKIFNYLQ-FEDIINSLGVSQNWNKIIR 50 (464)
T ss_dssp HHSCHHHHHHHHTTSC-HHHHHHHHTTCHHHHHHHT
T ss_pred HHCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHc
Confidence 4699999999999999 9999999999999999763
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.40 E-value=0.00013 Score=71.94 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=56.3
Q ss_pred CCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEecccCceeeecCCCccEEEecCcc
Q 014774 149 HKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSLSVSCPKIQFLEVQGCS 228 (419)
Q Consensus 149 ~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l~~~~~~L~~L~l~~~~ 228 (419)
..|+.|+|+++.++. +.. +..+++|+.|+++++... .. | .....+++|+.|+++++.
T Consensus 441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~l~-~l----p---------------~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNRLR-AL----P---------------PALAALRCLEVLQASDNA 497 (567)
T ss_dssp TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSCCC-CC----C---------------GGGGGCTTCCEEECCSSC
T ss_pred cCceEEEecCCCCCC--CcC-ccccccCcEeecCccccc-cc----c---------------hhhhcCCCCCEEECCCCC
Confidence 358888888887654 223 567888888888877432 11 0 001345778888888765
Q ss_pred ceeeccCCcCceeEeecccceEEEeccCCCCCcCEeeeCCCCchHHHH--HHHhccCCcccEEEeee
Q 014774 229 WIRVQETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRGVQWCWDAI--SKMLYWASEVKHLYMKV 293 (419)
Q Consensus 229 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l--~~l~~~~~~L~~L~l~~ 293 (419)
+..++ .++.+++|+.|++++-.. ..+ ...+..+++|+.|+++.
T Consensus 498 l~~lp--------------------~l~~l~~L~~L~Ls~N~l--~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 498 LENVD--------------------GVANLPRLQELLLCNNRL--QQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CCCCG--------------------GGTTCSSCCEEECCSSCC--CSSSTTGGGGGCTTCCEEECTT
T ss_pred CCCCc--------------------ccCCCCCCcEEECCCCCC--CCCCCcHHHhcCCCCCEEEecC
Confidence 42221 233455666666633211 111 22345567777777754
No 135
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.34 E-value=0.00059 Score=56.69 Aligned_cols=124 Identities=12% Similarity=0.068 Sum_probs=73.8
Q ss_pred CCCChHHHHHHHHHhCCCcceEEEe-c-CCCcchHHHHHHH--hcCCceEEEEEecCccccccccCCCccc----ccccC
Q 014774 54 CDNSPDDIVLKMIYSIVCLEELVVY-T-PFSKAGLDSWLML--AGSTLKHLELRMDNLADYQGCLENPSKL----DCISR 125 (419)
Q Consensus 54 ~~~~~~~~~~~~l~~~~~L~~l~l~-~-~~~~~~~~~w~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l----~~l~~ 125 (419)
.....+..+.+++.....|++|.++ + ............. ....|+.|+++....+ +.+. ..+..
T Consensus 20 ~~~~~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~--------~~g~~~l~~~L~~ 91 (185)
T 1io0_A 20 NSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN--------DPVAFALAEMLKV 91 (185)
T ss_dssp CCCCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC--------HHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC--------hHHHHHHHHHHHh
Confidence 3445566777788888889999994 3 3333222222111 2356777776643322 2222 22333
Q ss_pred CCCccEEEecCccccCCc------ccccCCCccEEEe--cCeeeChHHHH---HHHhcCCCCcEEEccCCC
Q 014774 126 AKNLESLKLWGVLMVSSP------KWDVFHKLQNLEI--VGARLEDPALS---TALRACPNLTNLLLLGCE 185 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~------~~~~~~~L~~L~L--~~~~~~~~~l~---~l~~~~p~L~~L~l~~c~ 185 (419)
.++|++|+|+++...+.. .....+.|+.|+| +++.+++++.. ..+..+++|++|++++|.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 677888888776543322 1355677888888 67777776643 444567788888887764
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.33 E-value=9.6e-06 Score=68.48 Aligned_cols=59 Identities=14% Similarity=0.050 Sum_probs=30.1
Q ss_pred cCCCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCC
Q 014774 124 SRAKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGC 184 (419)
Q Consensus 124 ~~~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c 184 (419)
..+++|++|+++++.....+.+..+++|+.|++++|.+++ +......+++|+.|+++++
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYN 103 (198)
T ss_dssp HHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEE
T ss_pred hcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCC
Confidence 3355666666655543333334455666666666665442 2223334455555555554
No 137
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.31 E-value=0.0004 Score=64.11 Aligned_cols=143 Identities=14% Similarity=0.095 Sum_probs=71.3
Q ss_pred ccCCCCccEEEecCccccC---CcccccCCCccEE-EecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccc
Q 014774 123 ISRAKNLESLKLWGVLMVS---SPKWDVFHKLQNL-EIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLE 198 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~---~~~~~~~~~L~~L-~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~ 198 (419)
+..+++|++|+|+++.... ...+..+++++.+ .+.++.++.-. ...+..+++|+.|++.++............
T Consensus 50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~-- 126 (350)
T 4ay9_X 50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISNTGIKHLPDVHKIH-- 126 (350)
T ss_dssp STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTTCCEEEEEEECCSSCCCCTTCC--
T ss_pred HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhccccccccccccccccCCchhhcc--
Confidence 4557889999998875422 2235667776654 44444332110 112457889999999877543322111111
Q ss_pred cceeeEecccCc----e-----eeecCCCccEEEecCccceeecc----CCcCceeEeecccc-eEEEe-ccCCCCCcCE
Q 014774 199 QCKLDFYGLGNC----S-----LSVSCPKIQFLEVQGCSWIRVQE----TNCLRNLSISNNAG-RVYMV-DFGKLAALES 263 (419)
Q Consensus 199 ~~~L~~l~~~~~----~-----l~~~~~~L~~L~l~~~~~~~l~~----~~~L~~L~l~~~~~-~~~~~-~~~~~~~L~~ 263 (419)
...+..+.+..+ . +......++.|+++++.+..++. ..+++.+.+.+... ..... .+.++++|+.
T Consensus 127 ~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~ 206 (350)
T 4ay9_X 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVI 206 (350)
T ss_dssp BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSE
T ss_pred cchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccch
Confidence 112222221111 0 11112457778888877655543 34556666543211 11111 2345677888
Q ss_pred eeeCC
Q 014774 264 LTLRG 268 (419)
Q Consensus 264 L~l~~ 268 (419)
|++++
T Consensus 207 LdLs~ 211 (350)
T 4ay9_X 207 LDISR 211 (350)
T ss_dssp EECTT
T ss_pred hhcCC
Confidence 88743
No 138
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.24 E-value=0.00059 Score=63.26 Aligned_cols=58 Identities=21% Similarity=0.145 Sum_probs=24.7
Q ss_pred CCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCC
Q 014774 126 AKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGC 184 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c 184 (419)
+++|+.|+|.++.....+ .+..+++|+.|+|+++.++... ...+..+++|+.|+++++
T Consensus 63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD-EFLFSDLQALEVLLLYNN 122 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS
T ss_pred ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCC-HHHhCCCcCCCEEECCCC
Confidence 445555555544322111 2344555555555555432110 011234455555555544
No 139
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.20 E-value=0.00022 Score=68.00 Aligned_cols=35 Identities=20% Similarity=0.497 Sum_probs=32.9
Q ss_pred CCCCcHHHHHHHHhCCCCHHHHHHhhccchhHHHhh
Q 014774 1 MDSLPDAIVQYILSHMKNARDVALCNCVSKRWKESI 36 (419)
Q Consensus 1 ~~~LPd~ll~~I~~~L~~~~~~~~~~~vsk~w~~~~ 36 (419)
++.||+|++.+||+||+ .++++++++|||+|+.+.
T Consensus 19 ~~~lp~e~~~~i~~~l~-~~~l~~~~~v~~~~~~~~ 53 (445)
T 2ovr_B 19 ISLLPKELALYVLSFLE-PKDLLQAAQTCRYWRILA 53 (445)
T ss_dssp TTSSCHHHHHHHHTTSC-HHHHHHHTTSCHHHHHHH
T ss_pred hHHCCHHHHHHHHHhCC-HHHHHHHHHHhHHHHhhc
Confidence 57899999999999999 999999999999999865
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.11 E-value=0.00091 Score=65.94 Aligned_cols=59 Identities=20% Similarity=0.259 Sum_probs=27.8
Q ss_pred ccCCCCccEEEecCccccCCc-ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCC
Q 014774 123 ISRAKNLESLKLWGVLMVSSP-KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGC 184 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c 184 (419)
++.+++|+.|+|+++.....| .+..+++|+.|+|+++.++. +. -+..+++|+.|+++++
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSS
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCC
Confidence 333455555555554433333 33455555555555555432 11 2344555555555544
No 141
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.06 E-value=0.00012 Score=69.55 Aligned_cols=34 Identities=29% Similarity=0.512 Sum_probs=31.7
Q ss_pred CCCcHH----HHHHHHhCCCCHHHHHHhhccchhHHHhh
Q 014774 2 DSLPDA----IVQYILSHMKNARDVALCNCVSKRWKESI 36 (419)
Q Consensus 2 ~~LPd~----ll~~I~~~L~~~~~~~~~~~vsk~w~~~~ 36 (419)
+.||+| ++.+||+||+ .++++++++|||+|+.+.
T Consensus 12 ~~lp~e~~~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~ 49 (435)
T 1p22_A 12 TALPARGLDHIAENILSYLD-AKSLCAAELVCKEWYRVT 49 (435)
T ss_dssp HHTGGGTCHHHHHHHHTTCC-HHHHHHHHHHCHHHHHHH
T ss_pred HHCCcchHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHh
Confidence 469999 9999999999 999999999999999865
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.01 E-value=0.0018 Score=54.03 Aligned_cols=59 Identities=15% Similarity=0.265 Sum_probs=36.8
Q ss_pred CCCccEEEecCccccCCc-ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCC
Q 014774 126 AKNLESLKLWGVLMVSSP-KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCE 185 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~ 185 (419)
.++|++|++.+......+ .+..+++|+.|+|+++.++... ...+.++++|++|+++++.
T Consensus 30 ~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCc
Confidence 457788888776544333 4566777888888877754311 1123567777777777664
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.98 E-value=0.0017 Score=54.22 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=28.1
Q ss_pred CCccEEEecCccccCCc---ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCC
Q 014774 127 KNLESLKLWGVLMVSSP---KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGC 184 (419)
Q Consensus 127 ~~L~~L~L~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c 184 (419)
++|++|++.++.....+ .+..+++|+.|+|+++.++... ...+..+++|++|+++++
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSC
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCC
Confidence 36666666655432222 1455666666666666543210 112334555555555554
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.89 E-value=0.0013 Score=54.09 Aligned_cols=59 Identities=22% Similarity=0.224 Sum_probs=28.2
Q ss_pred CCCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCC
Q 014774 125 RAKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGC 184 (419)
Q Consensus 125 ~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c 184 (419)
.+++|++|++.++.....+ .+..+++|+.|+++++.++... ...+..+++|+.|+++++
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP-NGVFDKLTQLKELALDTN 110 (177)
T ss_dssp TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred CcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC-HHHhhCCcccCEEECcCC
Confidence 3456666666554332222 1345556666666655533210 112234555666666554
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=96.87 E-value=0.0023 Score=52.52 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=40.8
Q ss_pred CCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCC
Q 014774 126 AKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEG 186 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~ 186 (419)
.++|++|++.++.....+ .+..+++|+.|+++++.++... ...+..+++|+.|+++++..
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCCCc
Confidence 468899999876544333 2467888999999888755211 12245788888888887643
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=96.75 E-value=0.0033 Score=52.33 Aligned_cols=119 Identities=18% Similarity=0.138 Sum_probs=62.7
Q ss_pred cEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEecccC
Q 014774 130 ESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGN 209 (419)
Q Consensus 130 ~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~ 209 (419)
+.+++++......|. ...++|+.|+++++.++...-...+..+++|++|+++++...+... .
T Consensus 11 ~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~---------------- 72 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-N---------------- 72 (192)
T ss_dssp TEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-T----------------
T ss_pred CEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH-h----------------
Confidence 455555543322231 1234788888888775432211234567888888887764322110 0
Q ss_pred ceeeecCCCccEEEecCccceee-----ccCCcCceeEeecccceEE-EeccCCCCCcCEeeeCC
Q 014774 210 CSLSVSCPKIQFLEVQGCSWIRV-----QETNCLRNLSISNNAGRVY-MVDFGKLAALESLTLRG 268 (419)
Q Consensus 210 ~~l~~~~~~L~~L~l~~~~~~~l-----~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~ 268 (419)
.....++|+.|+++++.+..+ ...++|+.|+++++.-... ...+..+++|+.|++++
T Consensus 73 --~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 73 --AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp --TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred --HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 012346666677766655322 2356677777766411111 11344577888888844
No 147
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=96.64 E-value=0.0038 Score=52.06 Aligned_cols=88 Identities=15% Similarity=0.076 Sum_probs=59.0
Q ss_pred cccCCCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCccccccccccccc
Q 014774 122 CISRAKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQ 199 (419)
Q Consensus 122 ~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~ 199 (419)
.+..+++|+.|+|+++.....+ .+..+++|+.|+|+++.++...- ..+..+++|+.|+++++....-..
T Consensus 49 ~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~-------- 119 (193)
T 2wfh_A 49 ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP-RTFDGLKSLRLLSLHGNDISVVPE-------- 119 (193)
T ss_dssp GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCCCBCCT--------
T ss_pred HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH-HHhCCCCCCCEEECCCCCCCeeCh--------
Confidence 4556889999999887654443 46788999999999998553211 124578999999998875332110
Q ss_pred ceeeEecccCceeeecCCCccEEEecCccc
Q 014774 200 CKLDFYGLGNCSLSVSCPKIQFLEVQGCSW 229 (419)
Q Consensus 200 ~~L~~l~~~~~~l~~~~~~L~~L~l~~~~~ 229 (419)
......++|+.|++.++.+
T Consensus 120 -----------~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 120 -----------GAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp -----------TTTTTCTTCCEEECCSSCE
T ss_pred -----------hhhhcCccccEEEeCCCCe
Confidence 0012357788888877655
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.57 E-value=0.0012 Score=67.14 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=36.4
Q ss_pred ccCCCCccEEEecCccccCCc-ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCC
Q 014774 123 ISRAKNLESLKLWGVLMVSSP-KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCE 185 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~ 185 (419)
+..+++|+.|+|+++.....+ .+..+++|+.|+|++|.++ .+..-+..+++|+.|+++++.
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSC
T ss_pred hccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCc
Confidence 334667777777766544433 3456777777777777654 122224567777777777664
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.32 E-value=0.0061 Score=57.20 Aligned_cols=97 Identities=10% Similarity=0.048 Sum_probs=54.6
Q ss_pred CCccEEEecCcccee-----eccCCcCceeEeecccc------eEEEeccCCCCCcCEeeeC-CCCchHHHHHHHhccCC
Q 014774 217 PKIQFLEVQGCSWIR-----VQETNCLRNLSISNNAG------RVYMVDFGKLAALESLTLR-GVQWCWDAISKMLYWAS 284 (419)
Q Consensus 217 ~~L~~L~l~~~~~~~-----l~~~~~L~~L~l~~~~~------~~~~~~~~~~~~L~~L~l~-~~~~~~~~l~~l~~~~~ 284 (419)
.+|+.+.+... +.. +..+++|+.+.+....- .+......+|++|+.+.+. +++.-. ...+..|+
T Consensus 248 ~~L~~i~lp~~-i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~---~~aF~~c~ 323 (401)
T 4fdw_A 248 SGITTVKLPNG-VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILG---QGLLGGNR 323 (401)
T ss_dssp CCCSEEEEETT-CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEEC---TTTTTTCC
T ss_pred CCccEEEeCCC-ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEh---hhhhcCCC
Confidence 45666666432 222 23367777777654211 1112234568889999883 333210 12356789
Q ss_pred cccEEEeee--eecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhH
Q 014774 285 EVKHLYMKV--EFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFA 331 (419)
Q Consensus 285 ~L~~L~l~~--~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 331 (419)
+|+.+.+.. ...+. . .+.++ +|+.+.+.++...
T Consensus 324 ~L~~l~lp~~l~~I~~------------~-aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 324 KVTQLTIPANVTQINF------------S-AFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp SCCEEEECTTCCEECT------------T-SSSSS-CCCEEEECCSSCC
T ss_pred CccEEEECccccEEcH------------H-hCCCC-CCCEEEEcCCCCc
Confidence 999999843 23333 1 13456 8999999877543
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.30 E-value=0.018 Score=53.98 Aligned_cols=52 Identities=15% Similarity=0.140 Sum_probs=31.2
Q ss_pred CccEEEecCcc-ccCCcccccCCCccEEEecCe-e-eChHHHHHHHhcCCCCcEEEccCC
Q 014774 128 NLESLKLWGVL-MVSSPKWDVFHKLQNLEIVGA-R-LEDPALSTALRACPNLTNLLLLGC 184 (419)
Q Consensus 128 ~L~~L~L~~~~-~~~~~~~~~~~~L~~L~L~~~-~-~~~~~l~~l~~~~p~L~~L~l~~c 184 (419)
+|+.+.+.+.. .+....+..+ +|+.+.+... . +.+.. ..+|++|+.+.+.++
T Consensus 136 ~L~~i~l~~~i~~I~~~aF~~~-~L~~i~lp~~l~~I~~~a----F~~c~~L~~l~l~~n 190 (401)
T 4fdw_A 136 QIAKVVLNEGLKSIGDMAFFNS-TVQEIVFPSTLEQLKEDI----FYYCYNLKKADLSKT 190 (401)
T ss_dssp CCSEEECCTTCCEECTTTTTTC-CCCEEECCTTCCEECSST----TTTCTTCCEEECTTS
T ss_pred CccEEEeCCCccEECHHhcCCC-CceEEEeCCCccEehHHH----hhCcccCCeeecCCC
Confidence 68888875432 2222234443 6888888653 2 55443 357888888888754
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=96.25 E-value=0.0019 Score=54.12 Aligned_cols=60 Identities=23% Similarity=0.198 Sum_probs=33.8
Q ss_pred CCCccEEEecCccccCCcccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCC
Q 014774 126 AKNLESLKLWGVLMVSSPKWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCE 185 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~ 185 (419)
+++|+.|++.++.....+.+..+++|+.|+++++.+++......+..+++|++|++.++.
T Consensus 92 ~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 92 ADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 456666666665433333445566666666666665543222334566666666666654
No 152
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.16 E-value=0.0023 Score=65.08 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=63.0
Q ss_pred ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceeeEecccCceeeecCCCccEEE
Q 014774 144 KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLDFYGLGNCSLSVSCPKIQFLE 223 (419)
Q Consensus 144 ~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~~l~~~~~~l~~~~~~L~~L~ 223 (419)
.+..++.|+.|+|+++.+.. +..-+..+++|+.|+++++... .. . .....+++|+.|+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~l--p-----------------~~~~~l~~L~~L~ 276 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-EL--P-----------------AEIKNLSNLRVLD 276 (727)
T ss_dssp ---CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CC--C-----------------GGGGGGTTCCEEE
T ss_pred hhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-cc--C-----------------hhhhCCCCCCEEe
Confidence 35677889999999887542 1111337888999999887433 11 0 0013456777777
Q ss_pred ecCccceeec----cCCcCceeEeecccceEEEeccCCCCCcCEeeeCC
Q 014774 224 VQGCSWIRVQ----ETNCLRNLSISNNAGRVYMVDFGKLAALESLTLRG 268 (419)
Q Consensus 224 l~~~~~~~l~----~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~ 268 (419)
+++|.+..++ .+++|+.|+++++.-......++.+++|+.|++++
T Consensus 277 Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 277 LSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred CcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence 7777664443 36778888887752111222466788999999944
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.01 E-value=0.0055 Score=50.12 Aligned_cols=63 Identities=19% Similarity=0.260 Sum_probs=32.3
Q ss_pred ccCCCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCC
Q 014774 123 ISRAKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEG 186 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~ 186 (419)
+..+++|+.|+|+++.....+ .+..+++|+.|+|+++.++.-. ...+..+++|+.|++.+++.
T Consensus 53 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 53 FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCB
T ss_pred hcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC-HHHhccccCCCEEEeCCCCc
Confidence 334556666666655433333 1345666666666666543210 11234566666666665543
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.97 E-value=0.01 Score=48.23 Aligned_cols=84 Identities=13% Similarity=0.135 Sum_probs=54.9
Q ss_pred CCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceee
Q 014774 126 AKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLD 203 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~ 203 (419)
.++|+.|+|.++.....+ .+..+++|+.|+|+++.++.-. ...+..+++|+.|+++++...+-..
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~~------------ 95 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQLKSIPR------------ 95 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT------------
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCccCEeCH------------
Confidence 478999999887554332 4578899999999998855311 1234678899999998774322110
Q ss_pred EecccCceeeecCCCccEEEecCccc
Q 014774 204 FYGLGNCSLSVSCPKIQFLEVQGCSW 229 (419)
Q Consensus 204 ~l~~~~~~l~~~~~~L~~L~l~~~~~ 229 (419)
.....+++|+.|+++++.+
T Consensus 96 -------~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 96 -------GAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp -------TTTTTCTTCCEEECCSSCB
T ss_pred -------HHhcCCCCCCEEEeCCCCC
Confidence 0012457788888887755
No 155
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.94 E-value=0.019 Score=53.71 Aligned_cols=35 Identities=14% Similarity=0.321 Sum_probs=20.3
Q ss_pred ccccCCCccEEEecCee--eChHHHHHHHhcCCCCcEEEcc
Q 014774 144 KWDVFHKLQNLEIVGAR--LEDPALSTALRACPNLTNLLLL 182 (419)
Q Consensus 144 ~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~~p~L~~L~l~ 182 (419)
.+..|++|+.+.+.... +.+.. ..+|++|+.+.+.
T Consensus 157 aF~~c~~L~~i~l~~~~~~I~~~~----F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSMETLHNGL----FSGCGKLKSIKLP 193 (394)
T ss_dssp TTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCBCCCC
T ss_pred hhcccCCCcEEecCCccceecccc----ccCCCCceEEEcC
Confidence 34566777777775432 44332 3457777776664
No 156
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=95.85 E-value=0.01 Score=48.50 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=56.0
Q ss_pred CCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccceee
Q 014774 126 AKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQCKLD 203 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~~L~ 203 (419)
.++|+.|+|.++.....+ .+..+++|+.|+|+++.++.-. ..++..+++|+.|+++++....-..
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l~~------------ 98 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKSIPR------------ 98 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCT------------
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCccceeCH------------
Confidence 478999999887654432 4678899999999999865311 1234678999999998774322110
Q ss_pred EecccCceeeecCCCccEEEecCccc
Q 014774 204 FYGLGNCSLSVSCPKIQFLEVQGCSW 229 (419)
Q Consensus 204 ~l~~~~~~l~~~~~~L~~L~l~~~~~ 229 (419)
.....+++|+.|+++++.+
T Consensus 99 -------~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 99 -------GAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp -------TTTTTCTTCSEEECCSSCB
T ss_pred -------HHhccccCCCEEEeCCCCc
Confidence 0012457788888887765
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.74 E-value=0.0085 Score=48.74 Aligned_cols=64 Identities=22% Similarity=0.258 Sum_probs=45.7
Q ss_pred ccCCCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCc
Q 014774 123 ISRAKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGV 187 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~ 187 (419)
+..+++|+.|+|+++.....+ .+..+++|+.|+|+++.++... ...+..+++|+.|++++++..
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 50 FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred hcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC-HHHhcCCCCCCEEEeCCCCCC
Confidence 455789999999887654443 3467899999999998854311 123467889999999887654
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.62 E-value=0.062 Score=47.05 Aligned_cols=57 Identities=32% Similarity=0.320 Sum_probs=31.0
Q ss_pred CCCCccEEEecCccccCCcccccCC--CccEEEecCeeeCh-----HHH-HHHHhcCCCCcEEEc
Q 014774 125 RAKNLESLKLWGVLMVSSPKWDVFH--KLQNLEIVGARLED-----PAL-STALRACPNLTNLLL 181 (419)
Q Consensus 125 ~~~~L~~L~L~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~-----~~l-~~l~~~~p~L~~L~l 181 (419)
.+++|+.|+|++....+...+..+. +|+.|+|+++++.. ... ..++..+|+|+.|+=
T Consensus 194 ~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 194 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 3667777777665433222222222 67777777776542 122 345666777776653
No 159
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=93.59 E-value=0.049 Score=49.77 Aligned_cols=63 Identities=25% Similarity=0.190 Sum_probs=43.6
Q ss_pred ccCCCCccEEEecC-ccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCC
Q 014774 123 ISRAKNLESLKLWG-VLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEG 186 (419)
Q Consensus 123 l~~~~~L~~L~L~~-~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~ 186 (419)
++...+|+.|+|++ ......+ .+..+++|+.|+|+++.++... ...+.++++|+.|+++++..
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCcc
Confidence 55577899999975 4433222 3578899999999998854311 12346789999999987754
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.41 E-value=0.24 Score=46.00 Aligned_cols=56 Identities=20% Similarity=0.190 Sum_probs=32.4
Q ss_pred ccCCCCccEEEecCc-cccCCcccccCCCccEEEecCee--eChHHHHHHHhcCCCCcEEEccC
Q 014774 123 ISRAKNLESLKLWGV-LMVSSPKWDVFHKLQNLEIVGAR--LEDPALSTALRACPNLTNLLLLG 183 (419)
Q Consensus 123 l~~~~~L~~L~L~~~-~~~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~~p~L~~L~l~~ 183 (419)
+..|++|+.+.+... ..+....+..+..|+.+.+.... +.+. ...+.+|+.+.+..
T Consensus 181 F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~-----~~~~~~l~~i~ip~ 239 (394)
T 4fs7_A 181 FSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYYLGDF-----ALSKTGVKNIIIPD 239 (394)
T ss_dssp TTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTT-----TTTTCCCCEEEECT
T ss_pred ccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceEeehh-----hcccCCCceEEECC
Confidence 334788888877542 22223345667777777766543 3332 23466777777753
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.12 E-value=1.4 Score=40.83 Aligned_cols=221 Identities=11% Similarity=0.114 Sum_probs=105.0
Q ss_pred cCCCCccEEEecCc-cccCCcccccCCCccEEEecCee--eChHHHHHHHhcCCCCcEEEccCCCC-ccccccccccccc
Q 014774 124 SRAKNLESLKLWGV-LMVSSPKWDVFHKLQNLEIVGAR--LEDPALSTALRACPNLTNLLLLGCEG-VRSVSIELPHLEQ 199 (419)
Q Consensus 124 ~~~~~L~~L~L~~~-~~~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~~p~L~~L~l~~c~~-~~~~~~~~~~l~~ 199 (419)
..|.+|+.+.+... ..+.+..+..+..|+.+.+...- +.+..+ .+.+|+.+.+..... +..... ..|
T Consensus 134 ~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~~~~I~~~aF-----~~~~l~~i~ip~~~~~i~~~af----~~c 204 (394)
T 4gt6_A 134 HHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDSVTAIEERAF-----TGTALTQIHIPAKVTRIGTNAF----SEC 204 (394)
T ss_dssp TTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTTT-----TTCCCSEEEECTTCCEECTTTT----TTC
T ss_pred hhhcccccccccceeeeecccceecccccccccccceeeEeccccc-----cccceeEEEECCcccccccchh----hhc
Confidence 44889998888542 22333345778888888886542 555443 245688887753211 111100 001
Q ss_pred ceeeEecc--------cCc----------ee--eecCCCccEEEecCcccee-----eccCCcCceeEeecccceEEEec
Q 014774 200 CKLDFYGL--------GNC----------SL--SVSCPKIQFLEVQGCSWIR-----VQETNCLRNLSISNNAGRVYMVD 254 (419)
Q Consensus 200 ~~L~~l~~--------~~~----------~l--~~~~~~L~~L~l~~~~~~~-----l~~~~~L~~L~l~~~~~~~~~~~ 254 (419)
..+..... .+. .+ ......+..+.+... ... +..+..|+.+.+......+....
T Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~a 283 (394)
T 4gt6_A 205 FALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVSIGTGA 283 (394)
T ss_dssp TTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCEECTTT
T ss_pred cccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccceecCcc
Confidence 11111100 000 00 011122333333211 111 22366777776643211111113
Q ss_pred cCCCCCcCEeeeC-CCCchHHHHHHHhccCCcccEEEeee--eecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhH
Q 014774 255 FGKLAALESLTLR-GVQWCWDAISKMLYWASEVKHLYMKV--EFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFA 331 (419)
Q Consensus 255 ~~~~~~L~~L~l~-~~~~~~~~l~~l~~~~~~L~~L~l~~--~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 331 (419)
..++++|+.+.+. +++.- -......|++|+.+.|.. ...++ ..+.+|.+|+.+.+..+..
T Consensus 284 F~~c~~L~~i~l~~~i~~I---~~~aF~~c~~L~~i~lp~~v~~I~~-------------~aF~~C~~L~~i~ip~sv~- 346 (394)
T 4gt6_A 284 FMNCPALQDIEFSSRITEL---PESVFAGCISLKSIDIPEGITQILD-------------DAFAGCEQLERIAIPSSVT- 346 (394)
T ss_dssp TTTCTTCCEEECCTTCCEE---CTTTTTTCTTCCEEECCTTCCEECT-------------TTTTTCTTCCEEEECTTCC-
T ss_pred cccccccccccCCCccccc---CceeecCCCCcCEEEeCCcccEehH-------------hHhhCCCCCCEEEECcccC-
Confidence 3457889998883 33321 012366789999999842 33433 1246788999998864311
Q ss_pred hhhhcccccccccccccccccceeeeccCCCCchhhhhhHHhhhhcccchhhHHHH
Q 014774 332 ALCQKNSLKNVESGFVIPCLEEVVVTVRSPLNAEQKMSTLESLLKYGKNLKTMVIR 387 (419)
Q Consensus 332 ~l~~~~~l~~l~~~~~~p~L~~l~l~~~~~~~~~~~~~~l~~ll~~~~~L~~L~i~ 387 (419)
.+ .. ..-..|++|+.+++.+.. .... -+..|.+|+.+.+.
T Consensus 347 ~I------~~-~aF~~C~~L~~i~~~~~~--------~~~~-~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 347 KI------PE-SAFSNCTALNNIEYSGSR--------SQWN-AISTDSGLQNLPVA 386 (394)
T ss_dssp BC------CG-GGGTTCTTCCEEEESSCH--------HHHH-TCBCCCCC------
T ss_pred EE------hH-hHhhCCCCCCEEEECCce--------eehh-hhhccCCCCEEEeC
Confidence 00 00 011247889998886421 1122 24668888888774
No 162
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=91.43 E-value=0.12 Score=45.11 Aligned_cols=37 Identities=30% Similarity=0.410 Sum_probs=15.2
Q ss_pred CCCccEEEecCeeeCh-HHHHHHHhcCCCCcEEEccCC
Q 014774 148 FHKLQNLEIVGARLED-PALSTALRACPNLTNLLLLGC 184 (419)
Q Consensus 148 ~~~L~~L~L~~~~~~~-~~l~~l~~~~p~L~~L~l~~c 184 (419)
+++|+.|+|+++.++. ..+..++..+|+|+.|+++++
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N 206 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN 206 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC
Confidence 4444444444444322 112223334444444444443
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=90.44 E-value=0.13 Score=46.86 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=39.5
Q ss_pred ccCCCCccEEEecCccccCCc--ccccCCCccEEEecCeeeChHHHHHHHhcCCCCcEEEccCCCCc
Q 014774 123 ISRAKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARLEDPALSTALRACPNLTNLLLLGCEGV 187 (419)
Q Consensus 123 l~~~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~~p~L~~L~l~~c~~~ 187 (419)
+..+++|+.|+|+++.....+ .+..+++|+.|+|+++.++.-. ..++...+ |+.|++.++...
T Consensus 52 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 52 LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS-WKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC-STTTCSCC-CCEEECCSSCCC
T ss_pred hccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC-HHHcccCC-ceEEEeeCCCcc
Confidence 455778888888876543222 4577888888888888754211 11122333 888888776554
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.78 E-value=0.18 Score=41.75 Aligned_cols=118 Identities=12% Similarity=0.192 Sum_probs=70.3
Q ss_pred CCCcCEeeeCC---CCch-HHHHHHHhccCCcccEEEeeeeecCCCCCCcCCCCcCHHHHhhcCCCeeEEEecCchhH--
Q 014774 258 LAALESLTLRG---VQWC-WDAISKMLYWASEVKHLYMKVEFTGDFDTLQPFPEVDFVEFFNNHPKLQKFDIHGAMFA-- 331 (419)
Q Consensus 258 ~~~L~~L~l~~---~~~~-~~~l~~l~~~~~~L~~L~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-- 331 (419)
-+.|++|++++ +.+. ...+...+..-+.|+.|+|.....+| .|.. .+...+..-+.|++|+++.|.+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd-~ga~-----alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD-SEAR-----GLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH-HHHT-----THHHHHHHCSSCCEEECCSSBCCHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCCh-HHHH-----HHHHHHhcCCccCeEecCCCcCCHH
Confidence 46788888853 3331 12355566667789999987644555 3321 24555666788999999866541
Q ss_pred ---hhhhcccccccccccccccccceeeeccC--CCCchhhhhhHHhhhhcccchhhHHHHhhh
Q 014774 332 ---ALCQKNSLKNVESGFVIPCLEEVVVTVRS--PLNAEQKMSTLESLLKYGKNLKTMVIRILQ 390 (419)
Q Consensus 332 ---~l~~~~~l~~l~~~~~~p~L~~l~l~~~~--~~~~~~~~~~l~~ll~~~~~L~~L~i~~~~ 390 (419)
+++. .++ .-..|+.|+++.+. .+.+++... +...++.-+.|++|.+....
T Consensus 114 Ga~ala~--aL~------~N~tL~~L~L~n~~~~~ig~~g~~~-ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 114 LLARLLR--STL------VTQSIVEFKADNQRQSVLGNQVEMD-MMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHH--HTT------TTCCCSEEECCCCSSCCCCHHHHHH-HHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHH--HHh------hCCceeEEECCCCcCcCcCHHHHHH-HHHHHHhCCCcCeEeccCCC
Confidence 3332 121 13568888887532 456555433 34445677888888776443
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.49 E-value=1.4 Score=36.38 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=32.3
Q ss_pred CCCccEEEecCccccCCcc------cccCCCccEEEecCeeeChHHHHHHHh---cCCCCcEEEccCC
Q 014774 126 AKNLESLKLWGVLMVSSPK------WDVFHKLQNLEIVGARLEDPALSTALR---ACPNLTNLLLLGC 184 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~~------~~~~~~L~~L~L~~~~~~~~~l~~l~~---~~p~L~~L~l~~c 184 (419)
-..|+.|+|+++...+... ...-+.|+.|+|+++.+++.+...++. .-..|++|+++++
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 3456666666654322210 134456677777776666666655543 2344666666644
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=76.79 E-value=8.5 Score=35.04 Aligned_cols=141 Identities=16% Similarity=0.123 Sum_probs=68.2
Q ss_pred cCCCCccEEEecCccc-cCCcccccCCCccEEEecCee--eChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccc
Q 014774 124 SRAKNLESLKLWGVLM-VSSPKWDVFHKLQNLEIVGAR--LEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQC 200 (419)
Q Consensus 124 ~~~~~L~~L~L~~~~~-~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~ 200 (419)
..+.++..+.+..... .....+..+.+|+.+.+...- +.+.. ...|.+|+.+.+... ++..+-.+
T Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~~~~----f~~~~~L~~i~lp~~--v~~I~~~a------ 258 (379)
T 4h09_A 191 PAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLGDGA----FYGMKALDEIAIPKN--VTSIGSFL------ 258 (379)
T ss_dssp CTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEECTTT----TTTCSSCCEEEECTT--CCEECTTT------
T ss_pred cccccccccccccceeEEeecccccccccceeeeccceeEEcccc----ccCCccceEEEcCCC--ccEeCccc------
Confidence 3366666666543222 222234667788888875432 44432 356888888888542 22111110
Q ss_pred eeeEecccCceeeecCCCccEEEecCccce-----eeccCCcCceeEeeccc-ceEEEeccCCCCCcCEeee-CCCCchH
Q 014774 201 KLDFYGLGNCSLSVSCPKIQFLEVQGCSWI-----RVQETNCLRNLSISNNA-GRVYMVDFGKLAALESLTL-RGVQWCW 273 (419)
Q Consensus 201 ~L~~l~~~~~~l~~~~~~L~~L~l~~~~~~-----~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l-~~~~~~~ 273 (419)
...+..|+.+.+... +. .+..+.+|+.+.+.+.. ..+......+|.+|+++.+ .+++.-.
T Consensus 259 ------------F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~l~~I~ 325 (379)
T 4h09_A 259 ------------LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTALKTIQ 325 (379)
T ss_dssp ------------TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEEC
T ss_pred ------------cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCccccEEH
Confidence 012233333433221 11 11224556655554310 1111113345778888888 3443210
Q ss_pred HHHHHHhccCCcccEEEee
Q 014774 274 DAISKMLYWASEVKHLYMK 292 (419)
Q Consensus 274 ~~l~~l~~~~~~L~~L~l~ 292 (419)
......|++|+.+.+.
T Consensus 326 ---~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 326 ---VYAFKNCKALSTISYP 341 (379)
T ss_dssp ---TTTTTTCTTCCCCCCC
T ss_pred ---HHHhhCCCCCCEEEEC
Confidence 1135678888888873
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=62.38 E-value=8.2 Score=35.46 Aligned_cols=78 Identities=12% Similarity=0.197 Sum_probs=47.9
Q ss_pred cCCCCccEEEecCcc-ccCCcccccCCCccEEEecCe-e-eChHHHHHHHhcCCCCcEEEccCCCCcccccccccccccc
Q 014774 124 SRAKNLESLKLWGVL-MVSSPKWDVFHKLQNLEIVGA-R-LEDPALSTALRACPNLTNLLLLGCEGVRSVSIELPHLEQC 200 (419)
Q Consensus 124 ~~~~~L~~L~L~~~~-~~~~~~~~~~~~L~~L~L~~~-~-~~~~~l~~l~~~~p~L~~L~l~~c~~~~~~~~~~~~l~~~ 200 (419)
..|++|+.+.+.+.. .+....+..|.+|+.+.|... . +.+.+ ..+|.+|+.+.+... ++..+-.+ -..|.
T Consensus 285 ~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~s--v~~I~~~a-F~~C~ 357 (394)
T 4gt6_A 285 MNCPALQDIEFSSRITELPESVFAGCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPSS--VTKIPESA-FSNCT 357 (394)
T ss_dssp TTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECTT--CCBCCGGG-GTTCT
T ss_pred ccccccccccCCCcccccCceeecCCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECcc--cCEEhHhH-hhCCC
Confidence 348899998885432 233335678899999999653 3 66654 457999999999632 22221111 12345
Q ss_pred eeeEeccc
Q 014774 201 KLDFYGLG 208 (419)
Q Consensus 201 ~L~~l~~~ 208 (419)
.|+.+.+.
T Consensus 358 ~L~~i~~~ 365 (394)
T 4gt6_A 358 ALNNIEYS 365 (394)
T ss_dssp TCCEEEES
T ss_pred CCCEEEEC
Confidence 66666654
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=60.52 E-value=13 Score=27.99 Aligned_cols=36 Identities=17% Similarity=0.178 Sum_probs=26.8
Q ss_pred CCCccEEEecCccccCCc--ccccCCCccEEEecCeee
Q 014774 126 AKNLESLKLWGVLMVSSP--KWDVFHKLQNLEIVGARL 161 (419)
Q Consensus 126 ~~~L~~L~L~~~~~~~~~--~~~~~~~L~~L~L~~~~~ 161 (419)
.++|+.|+|++......+ .+..+++|+.|+|.++++
T Consensus 30 p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 458999999887654443 456788899999998873
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=38.41 E-value=18 Score=32.74 Aligned_cols=55 Identities=16% Similarity=0.258 Sum_probs=38.3
Q ss_pred cCCCCccEEEecCcc-ccCCcccccCCCccEEEecCee---eChHHHHHHHhcCCCCcEEEcc
Q 014774 124 SRAKNLESLKLWGVL-MVSSPKWDVFHKLQNLEIVGAR---LEDPALSTALRACPNLTNLLLL 182 (419)
Q Consensus 124 ~~~~~L~~L~L~~~~-~~~~~~~~~~~~L~~L~L~~~~---~~~~~l~~l~~~~p~L~~L~l~ 182 (419)
..|.+|+.+.+.+.. .+....+..|.+|+.+.+..+. +.+.+ ..+|.+|+.+.+.
T Consensus 260 ~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a----F~~c~~L~~i~lp 318 (379)
T 4h09_A 260 QNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRV----FMDCVKLSSVTLP 318 (379)
T ss_dssp TTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTT----TTTCTTCCEEECC
T ss_pred ceeehhccccccccceeccccccccccccccccccccccceehhhh----hcCCCCCCEEEcC
Confidence 348888888885432 2223346788999999997543 65544 4679999999996
No 170
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=23.11 E-value=74 Score=22.49 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=19.1
Q ss_pred ccCCCCccEEEecCc-cccCCcccccCCCccEEEecC
Q 014774 123 ISRAKNLESLKLWGV-LMVSSPKWDVFHKLQNLEIVG 158 (419)
Q Consensus 123 l~~~~~L~~L~L~~~-~~~~~~~~~~~~~L~~L~L~~ 158 (419)
+..|.+|+++.|-.. ..+.+..+..|.+|+.+.+..
T Consensus 16 F~~c~~L~~i~iP~~v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPNIGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTTSSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCchheEcHHHHhccCCccEEEEcC
Confidence 444677777666332 222333455666666666654
Done!