BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014775
(419 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DKA|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Apo-Form
pdb|2DKA|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Apo-Form
pdb|2DKC|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Substrate Complex
pdb|2DKC|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Substrate Complex
pdb|2DKD|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Product Complex
pdb|2DKD|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Product Complex
Length = 544
Score = 260 bits (665), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 166/400 (41%), Positives = 228/400 (57%), Gaps = 31/400 (7%)
Query: 14 SHFPPPPGVKLSYGTAGFRADASILQSTVYRVGILAALRSLKTQ-CVIGLMITASHNKVT 72
SH P P GV +YGTAGFR A L + VGI+A+LRS Q +G+MITASHN
Sbjct: 13 SH-PKPQGVTFTYGTAGFRMKADKLDYVTFTVGIIASLRSKYLQGKTVGVMITASHNPPE 71
Query: 73 DNGVKIADPSGGMLSQDWEPFSDQLANA-PDP--------QSLVSLIEEFVKKEKIPFNG 123
DNGVK+ DP G ML WE ++ LANA P P SLV +I+ V KI +
Sbjct: 72 DNGVKVVDPLGSMLESSWEKYATDLANASPSPSNDSEGEKNSLVEVIKNLVSDLKIDLS- 130
Query: 124 KHPAEILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHWMVRARNKGL--K 181
PA +++ RD+R S +L A G +V D G+ TTP+LH++ R N K
Sbjct: 131 -IPANVVIARDSRESSPALSMATIDGFQSVPNTKYQDFGLFTTPELHYVTRTLNDPDFGK 189
Query: 182 ATESDYFEQLLSSFRCLMNLIPDRGTSNETEDKLIVDGANGVGGEKLEVIKEKL--NELD 239
TE Y+ +L SF+ + + SN + + +D ANGVG K++ + EK E+
Sbjct: 190 PTEDGYYSKLAKSFQEIYTIC----ESNNEKIDITIDAANGVGAPKIQELLEKYLHKEIS 245
Query: 240 IEVRNSG-KEGGVLNEGVGADFVQKEKVVPHGFGSNHAGIRCASLDGDADRLVYFLVPPN 298
V N K+ +LN GAD+V+ + +P + + AS DGDADRL+ + N
Sbjct: 246 FTVVNGDYKQPNLLNFDCGADYVKTNQKLPKNVKPVNNKLY-ASFDGDADRLICYY--QN 302
Query: 299 NCSKIDLVDGDKILSLFAVFIKEQLSILEEDTKGSNNYKARLGAVQTAYANGASTYYLRH 358
N +K L+DGDK+ +LFA+F+ +QL + TK S N +G VQTAYANG+ST Y+
Sbjct: 303 NDNKFKLLDGDKLSTLFALFL-QQLFKQIDPTKISLN----IGVVQTAYANGSSTKYVED 357
Query: 359 -LGLEVALAPTGVKFLHEKAAQYDIGIYFEANGHGTILFS 397
L + V PTGVK LH +A +DIG+YFEANGHGT++F+
Sbjct: 358 VLKIPVRCTPTGVKHLHHEAENFDIGVYFEANGHGTVIFN 397
>pdb|3I3W|A Chain A, Structure Of A Phosphoglucosamine Mutase From Francisella
Tularensis
pdb|3I3W|B Chain B, Structure Of A Phosphoglucosamine Mutase From Francisella
Tularensis
Length = 443
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 127/315 (40%), Gaps = 76/315 (24%)
Query: 125 HPAEILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHW-MVRAR------- 176
+P +++G+DTR SG L A G++A G D+G++ TP + + V+ R
Sbjct: 40 YPKFVIVGQDTRSSGGFLKFALVSGLNAA-GIDVLDLGVVPTPVVAFXTVKHRAAAGFVI 98
Query: 177 --------NKGLKATESDYF-------EQL---------------LSSFRCLMNLIPDRG 206
+ G+K S+ F E++ S++ L N I +
Sbjct: 99 TAXHNKFTDNGIKLFSSNGFKLDDALEEEVEDXIDGDFIYQPQFKFGSYKILANAIDEYI 158
Query: 207 TSNET--------EDKLIVDGANGVGGEKLEVIKEK--LNELDIEVRNSGKEGGVLNEGV 256
S + + K++VD A+G E + +K +N + I S +G +N G
Sbjct: 159 ESIYSRFAKFVNYKGKVVVDCAHGAASHNFEALLDKFGINYVSIA---SNPDGLNINVGC 215
Query: 257 GADFVQKEKVVPHGFGSNHAGIRCASLDGDADRLVYFLVPPNNCSKIDLVDGDKILSLFA 316
GA V + A + SLDGDADR++ +V N +DGD IL++ A
Sbjct: 216 GATCVSN---IKKAVKEQKADLGI-SLDGDADRII--IVDENGQE----IDGDGILNILA 265
Query: 317 VFIKEQLSILEEDTKGSNNYKARLGAVQTAYANGASTYYLRHLGLEVALAPTGVKFLHEK 376
+ D G N G V T N + + R + + G +++ E
Sbjct: 266 QY---------SDICGGTN-----GIVGTQXTNXSYENHYRANKIPFIRSKVGDRYVLED 311
Query: 377 AAQYDIGIYFEANGH 391
+Y I E++GH
Sbjct: 312 LVKYGYKIGGESSGH 326
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 48 LAALRSLKTQCVIGLMITASHNKVTDNGVKIADPSGGMLSQDWE 91
+ A ++K + G +ITA HNK TDNG+K+ +G L E
Sbjct: 82 VVAFXTVKHRAAAGFVITAXHNKFTDNGIKLFSSNGFKLDDALE 125
>pdb|1WQA|A Chain A, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|B Chain B, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|C Chain C, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
pdb|1WQA|D Chain D, Crystal Structure Of Pyrococcus Horikoshii
PhosphomannomutasePHOSPHOGLUCOMUTASE COMPLEXED WITH MG2+
Length = 455
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 123 GKHPAEILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHWMVRARN 177
G+ +++GRDTR SGE L EA G+ + VG D+GI TP + W + N
Sbjct: 38 GRKKPLVVVGRDTRVSGEMLKEALISGLLS-VGCDVIDVGIAPTPAVQWATKHFN 91
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 61 GLMITASHNKVTDNGVKIADPSGGMLSQDWEPFSDQL 97
G +ITASHN NG+K+ +P+G L ++ E ++L
Sbjct: 95 GAVITASHNPPEYNGIKLLEPNGMGLKKEREAIVEEL 131
>pdb|2F7L|A Chain A, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
pdb|2F7L|B Chain B, Crystal Structure Of Sulfolobus Tokodaii
PhosphomannomutasePHOSPHOGLUCOMUTASE
Length = 455
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 121 FNGKHPAEILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHWMVRA 175
F GK+ ++IL+GRD R G+ L++ + G+ + VG +D G+ TP L + V+
Sbjct: 33 FFGKN-SKILVGRDVRAGGDMLVKIVEGGLLS-VGVEVYDGGMAPTPALQYAVKT 85
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 61 GLMITASHNKVTDNGVKIADPSG 83
G++ITASHN NG+K+ D G
Sbjct: 91 GVVITASHNPAPYNGIKVVDKDG 113
>pdb|3PDK|A Chain A, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
pdb|3PDK|B Chain B, Crystal Structure Of Phosphoglucosamine Mutase From B.
Anthracis
Length = 469
Score = 34.7 bits (78), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 96/242 (39%), Gaps = 60/242 (24%)
Query: 128 EILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHWMVRA------------ 175
++++GRDTR SG L A G+ + GA +G+++TP + ++ +A
Sbjct: 63 KVIIGRDTRISGHMLEGALVAGLLS-TGAEVMRLGVISTPGVAYLTKALDAQAGVMISAS 121
Query: 176 ----RNKGLKATESDYF----EQLLSSFRCLMNLIPDRGTSNETEDKLIVDGANGVGGEK 227
++ G+K SD F EQ L + + T + D G G +
Sbjct: 122 HNPVQDNGIKFFGSDGFKLTDEQEAEIEALLDKEVDELPRPTGTNLGQVSDYFEG-GQKY 180
Query: 228 LEVIKEKLNE----------------------------LDIEVRNSGKEGGVLNEGVGAD 259
L+ IK+ + E DI + G +N+GVG+
Sbjct: 181 LQYIKQTVEEDFSGLHIALDCAHGATSSLAPYLFADLEADISTMGTSPNGMNINDGVGS- 239
Query: 260 FVQKEKVVPHGFGSNHAGIRCASLDGDADRLVYFLVPPNNCSKIDLVDGDKILSLFAVFI 319
+V+ A I A DGD DRL+ K ++VDGD+I+ + A ++
Sbjct: 240 --THPEVLAELVKEKGADIGLA-FDGDGDRLIAV------DEKGNIVDGDQIMFICAKYM 290
Query: 320 KE 321
KE
Sbjct: 291 KE 292
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 42 VYRVGILAA------LRSLKTQCVIGLMITASHNKVTDNGVKIADPSGGMLSQDWE 91
V R+G+++ ++L Q G+MI+ASHN V DNG+K G L+ + E
Sbjct: 92 VMRLGVISTPGVAYLTKALDAQA--GVMISASHNPVQDNGIKFFGSDGFKLTDEQE 145
>pdb|1TUO|A Chain A, Crystal Structure Of Putative Phosphomannomutase From
Thermus Thermophilus Hb8
Length = 464
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 24 LSYGTAGFRADASILQSTVYRVGILAALRSLKTQCVIGLMITASHNKVTDNGVKIADPSG 83
LS AG +L+ V + A+R LK G M+TASHN GVK D +G
Sbjct: 68 LSGHLAGMGLKVVLLKGPVPTPLLSFAVRHLKAAG--GAMLTASHNPPQYLGVKFKDATG 125
Query: 84 GMLSQD 89
G ++Q+
Sbjct: 126 GPIAQE 131
>pdb|3FXG|A Chain A, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|B Chain B, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|C Chain C, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|D Chain D, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|E Chain E, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|F Chain F, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|G Chain G, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
pdb|3FXG|H Chain H, Crystal Structure Of Rhamnonate Dehydratase From
Gibberella Zeae Complexed With Mg
Length = 455
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 86 LSQDWEPFSDQLANAPDPQSLVSLIEEFVKKEKIPFNG 123
+SQ PF + LAN+PD +S++ + + E IP G
Sbjct: 336 ISQPNTPFQEYLANSPDGKSVLPVFGDLFIDEPIPTKG 373
>pdb|2FUV|A Chain A, Phosphoglucomutase From Salmonella Typhimurium.
pdb|2FUV|B Chain B, Phosphoglucomutase From Salmonella Typhimurium
Length = 549
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 61 GLMITASHNKVTDNGVKIADPSGGMLSQDWEPFSDQLANA 100
G++IT SHN D G+K P+GG + + ANA
Sbjct: 143 GIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRANA 182
>pdb|2P0I|A Chain A, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|B Chain B, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|C Chain C, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|D Chain D, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|E Chain E, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|F Chain F, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|G Chain G, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
pdb|2P0I|H Chain H, Crystal Structure Of L-Rhamnonate Dehydratase From
Gibberella Zeae
Length = 456
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 86 LSQDWEPFSDQLANAPDPQSLVSLIEEFVKKEKIPFNG 123
+SQ PF + LAN+PD +S++ + + E IP G
Sbjct: 336 ISQPNTPFQEYLANSPDGKSVLPVFGDLFIDEPIPTKG 373
>pdb|1BOB|A Chain A, Histone Acetyltransferase Hat1 From Saccharomyces
Cerevisiae In Complex With Acetyl Coenzyme A
Length = 320
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 351 ASTY-YLRHLGLEVALAPTGVKFLHEKAAQYDIGIYFEANGHGTILFSERFLSWLEDKN 408
+TY Y +LG + KF K +Q+ I ++ GHG+ L+ SWLEDK+
Sbjct: 191 VTTYKYWHYLGAKSFDEDIDKKF-RAKISQFLIFPPYQNKGHGSCLYEAIIQSWLEDKS 248
>pdb|3OLP|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
pdb|3OLP|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
Length = 570
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 61 GLMITASHNKVTDNGVKIADPSGGMLSQDWEPFSDQLANA 100
G++IT SHN D G+K P+GG + + ANA
Sbjct: 164 GIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRANA 203
>pdb|3NA5|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens.
pdb|3NA5|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens
Length = 570
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 61 GLMITASHNKVTDNGVKIADPSGGMLSQDWEPFSDQLANA 100
G++IT SHN D G+K P+GG + + ANA
Sbjct: 164 GIVITPSHNPPEDGGIKYNPPNGGPADTNVTKVVEDRANA 203
>pdb|3O15|A Chain A, Crystal Structure Of Bacillus Subtilis Thiamin Phosphate
Synthase Complexed With A Carboxylated Thiazole
Phosphate
Length = 235
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 318 FIKEQLSILEEDTKGSNNYKAR-LGAVQTAYANGASTYYLRHLGLEVALAPTGVKFLHE- 375
+KE LS+ GSNN KA + VQ A GA+ Y R G + +KF +
Sbjct: 21 MMKELLSVYF--IMGSNNTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKA 78
Query: 376 KAAQYDIGIYFEAN 389
+AA + G+ F N
Sbjct: 79 QAACREAGVPFIVN 92
>pdb|3O16|A Chain A, Crystal Structure Of Bacillus Subtilis Thiamin Phosphate
Synthase K159a
Length = 235
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 318 FIKEQLSILEEDTKGSNNYKAR-LGAVQTAYANGASTYYLRHLGLEVALAPTGVKFLHE- 375
+KE LS+ GSNN KA + VQ A GA+ Y R G + +KF +
Sbjct: 21 MMKELLSVYF--IMGSNNTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKA 78
Query: 376 KAAQYDIGIYFEAN 389
+AA + G+ F N
Sbjct: 79 QAACREAGVPFIVN 92
>pdb|1G67|A Chain A, Thiamin Phosphate Synthase
pdb|1G67|B Chain B, Thiamin Phosphate Synthase
Length = 225
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 318 FIKEQLSILEEDTKGSNNYKAR-LGAVQTAYANGASTYYLRHLGLEVALAPTGVKFLHE- 375
+KE LS+ GSNN KA + VQ A GA+ Y R G + +KF +
Sbjct: 11 MMKELLSVYF--IMGSNNTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKA 68
Query: 376 KAAQYDIGIYFEAN 389
+AA + G+ F N
Sbjct: 69 QAACREAGVPFIVN 82
>pdb|3RSM|A Chain A, Crystal Structure Of S108c Mutant Of PmmPGM
Length = 463
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 129 ILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHW 171
+ +GRD R SG L++ QG+ G D+G++ TP L++
Sbjct: 51 VAVGRDGRLSGPELVKQLIQGLVD-CGCQVSDVGMVPTPVLYY 92
>pdb|2H4L|X Chain X, Complex Of PmmPGM WITH RIBOSE 1-Phosphate
pdb|2H5A|X Chain X, Complex Of The Enzyme PmmPGM WITH XYLOSE 1-Phosphate
Length = 463
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 129 ILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHW 171
+ +GRD R SG L++ QG+ G D+G++ TP L++
Sbjct: 51 VAVGRDGRLSGPELVKQLIQGLVD-CGCQVSDVGMVPTPVLYY 92
>pdb|2FKF|A Chain A, PhosphomannomutasePHOSPHOGLUCOMUTASE FROM PSEUDOMONAS
AERUGINOSA WITH Alpha-D-Glucose 1,6-Bisphosphate Bound
Length = 462
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 129 ILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHW 171
+ +GRD R SG L++ QG+ G D+G++ TP L++
Sbjct: 50 VAVGRDGRLSGPELVKQLIQGLVD-CGCQVSDVGMVPTPVLYY 91
>pdb|1P5D|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1P5G|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCJ|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
pdb|1PCM|X Chain X, Enzyme-Ligand Complex Of P. Aeruginosa PmmPGM
Length = 463
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 129 ILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHW 171
+ +GRD R SG L++ QG+ G D+G++ TP L++
Sbjct: 51 VAVGRDGRLSGPELVKQLIQGLVD-CGCQVSDVGMVPTPVLYY 92
>pdb|1K2Y|X Chain X, Crystal Structure Of Phosphomannomutase/phosphoglucomutase
S108a Mutant From P. Aeruginosa
Length = 463
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 129 ILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHW 171
+ +GRD R SG L++ QG+ G D+G++ TP L++
Sbjct: 51 VAVGRDGRLSGPELVKQLIQGLVD-CGCQVSDVGMVPTPVLYY 92
>pdb|2TPS|A Chain A, Thiamin Phosphate Synthase
pdb|2TPS|B Chain B, Thiamin Phosphate Synthase
pdb|1G4T|A Chain A, Thiamin Phosphate Synthase
pdb|1G4T|B Chain B, Thiamin Phosphate Synthase
Length = 227
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 318 FIKEQLSILEEDTKGSNNYKAR-LGAVQTAYANGASTYYLRHLGLEVALAPTGVKFLHE- 375
+KE LS+ GSNN KA + VQ A GA+ Y R G + +KF +
Sbjct: 13 MMKELLSVYF--IMGSNNTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKA 70
Query: 376 KAAQYDIGIYFEAN 389
+AA + G+ F N
Sbjct: 71 QAACREAGVPFIVN 84
>pdb|2FKM|X Chain X, Pmm/pgm S108d Mutant With Alpha-d-glucose 1,6-bisphosphate
Bound
Length = 462
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 129 ILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHW 171
+ +GRD R SG L++ QG+ G D+G++ TP L++
Sbjct: 50 VAVGRDGRLSGPELVKQLIQGLVD-CGCQVSDVGMVPTPVLYY 91
>pdb|1G4P|A Chain A, Thiamin Phosphate Synthase
pdb|1G4P|B Chain B, Thiamin Phosphate Synthase
pdb|1G4S|A Chain A, Thiamin Phosphate Synthase
pdb|1G4S|B Chain B, Thiamin Phosphate Synthase
Length = 226
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 318 FIKEQLSILEEDTKGSNNYKAR-LGAVQTAYANGASTYYLRHLGLEVALAPTGVKFLHE- 375
+KE LS+ GSNN KA + VQ A GA+ Y R G + +KF +
Sbjct: 12 MMKELLSVYF--IMGSNNTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKA 69
Query: 376 KAAQYDIGIYFEAN 389
+AA + G+ F N
Sbjct: 70 QAACREAGVPFIVN 83
>pdb|3BKQ|X Chain X, Structure Of The P368g Mutant Of PmmPGM IN COMPLEX WITH
ITS SUBSTRATE
pdb|3C04|A Chain A, Structure Of The P368g Mutant Of PmmPGM FROM P. AERUGINOSA
Length = 463
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 129 ILLGRDTRPSGESLLEAAKQGISAVVGAVAHDMGILTTPQLHW 171
+ +GRD R SG L++ QG+ G D+G++ TP L++
Sbjct: 51 VAVGRDGRLSGPELVKQLIQGLVD-CGCQVSDVGMVPTPVLYY 92
>pdb|1G4E|A Chain A, Thiamin Phosphate Synthase
pdb|1G4E|B Chain B, Thiamin Phosphate Synthase
pdb|1G6C|A Chain A, Thiamin Phosphate Synthase
pdb|1G6C|B Chain B, Thiamin Phosphate Synthase
Length = 227
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 318 FIKEQLSILEEDTKGSNNYKAR-LGAVQTAYANGASTYYLRHLGLEVALAPTGVKFLHE- 375
+KE LS+ GSNN KA + VQ A GA+ Y R G + +KF +
Sbjct: 13 MMKELLSVYF--IMGSNNTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKA 70
Query: 376 KAAQYDIGIYFEAN 389
+AA + G+ F N
Sbjct: 71 QAACREAGVPFIVN 84
>pdb|1G69|A Chain A, Thiamin Phosphate Synthase
pdb|1G69|B Chain B, Thiamin Phosphate Synthase
Length = 228
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 318 FIKEQLSILEEDTKGSNNYKAR-LGAVQTAYANGASTYYLRHLGLEVALAPTGVKFLHE- 375
+KE LS+ GSNN KA + VQ A GA+ Y R G + +KF +
Sbjct: 14 MMKELLSVYF--IMGSNNTKADPVTVVQKALKGGATLYQFREKGGDALTGEARIKFAEKA 71
Query: 376 KAAQYDIGIYFEAN 389
+AA + G+ F N
Sbjct: 72 QAACREAGVPFIVN 85
>pdb|3N6O|A Chain A, Crystal Structure Of The Gef And P4m Domain Of DrraSIDM
FROM Legionella Pneumophila
pdb|3N6O|B Chain B, Crystal Structure Of The Gef And P4m Domain Of DrraSIDM
FROM Legionella Pneumophila
Length = 311
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 93 FSDQLANAPDPQSLVSLIEEFVKKE--KIPFNGKHPAEILLGRDTR--PSGESLLEAAKQ 148
F D+LA A D QSL ++ E K+ +I G+ LLG T S E ++E ++
Sbjct: 239 FKDKLAEATDEQSLKQIVAELKSKDEYRILAKGQGLTTQLLGLKTSSVSSFEKMVEETRE 298
Query: 149 GISA 152
I +
Sbjct: 299 SIKS 302
>pdb|2Z0F|A Chain A, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
pdb|2Z0F|B Chain B, Crystal Structure Of Putative Phosphoglucomutase From
Thermus Thermophilus Hb8
Length = 524
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 61 GLMITASHNKVTDNGVKIADPSGG 84
G+++T SHN D G K P+GG
Sbjct: 124 GVLLTPSHNPPEDGGFKYNPPTGG 147
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,052,902
Number of Sequences: 62578
Number of extensions: 564290
Number of successful extensions: 1568
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1537
Number of HSP's gapped (non-prelim): 47
length of query: 419
length of database: 14,973,337
effective HSP length: 101
effective length of query: 318
effective length of database: 8,652,959
effective search space: 2751640962
effective search space used: 2751640962
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 53 (25.0 bits)