Query 014776
Match_columns 419
No_of_seqs 184 out of 1336
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:24:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02886 aminoacyl-tRNA ligase 100.0 1E-102 3E-107 790.6 38.9 362 57-418 25-386 (389)
2 KOG2713 Mitochondrial tryptoph 100.0 1E-99 2E-104 724.4 30.2 331 78-419 13-347 (347)
3 PRK12284 tryptophanyl-tRNA syn 100.0 1.7E-94 3.6E-99 736.0 35.0 321 78-417 2-332 (431)
4 PRK00927 tryptophanyl-tRNA syn 100.0 2.6E-93 5.5E-98 716.3 34.9 328 78-418 1-332 (333)
5 PRK12556 tryptophanyl-tRNA syn 100.0 5.7E-93 1.2E-97 712.2 34.5 320 78-417 3-332 (332)
6 PRK12283 tryptophanyl-tRNA syn 100.0 8.1E-92 1.7E-96 711.1 36.2 333 78-417 2-397 (398)
7 PRK12282 tryptophanyl-tRNA syn 100.0 1E-89 2.2E-94 689.2 35.1 324 78-418 2-331 (333)
8 COG0180 TrpS Tryptophanyl-tRNA 100.0 1.9E-90 4.2E-95 682.3 28.4 305 77-398 4-314 (314)
9 TIGR00233 trpS tryptophanyl-tR 100.0 1E-87 2.2E-92 674.0 32.3 319 77-416 1-328 (328)
10 cd00806 TrpRS_core catalytic c 100.0 3.7E-74 8.1E-79 565.2 26.6 274 80-370 1-280 (280)
11 PRK12285 tryptophanyl-tRNA syn 100.0 1.7E-73 3.6E-78 578.0 27.7 286 77-395 65-365 (368)
12 PRK08560 tyrosyl-tRNA syntheta 100.0 3.1E-69 6.6E-74 541.3 25.0 268 77-381 29-323 (329)
13 PTZ00126 tyrosyl-tRNA syntheta 100.0 4.2E-69 9.1E-74 548.1 25.8 271 77-381 65-366 (383)
14 PTZ00348 tyrosyl-tRNA syntheta 100.0 3.8E-65 8.2E-70 547.1 27.5 280 78-381 32-340 (682)
15 PLN02486 aminoacyl-tRNA ligase 100.0 2E-60 4.4E-65 483.8 28.3 276 77-383 72-370 (383)
16 PF00579 tRNA-synt_1b: tRNA sy 100.0 2.1E-60 4.5E-65 469.7 16.5 275 77-372 4-292 (292)
17 cd00805 TyrRS_core catalytic c 100.0 1.8E-59 3.9E-64 458.7 20.9 249 79-370 1-269 (269)
18 cd00395 Tyr_Trp_RS_core cataly 100.0 9.7E-59 2.1E-63 454.4 25.2 248 80-370 1-273 (273)
19 PRK05912 tyrosyl-tRNA syntheta 100.0 1.5E-51 3.3E-56 423.5 23.9 257 77-376 32-313 (408)
20 PRK13354 tyrosyl-tRNA syntheta 100.0 1.6E-48 3.5E-53 401.0 22.6 259 77-379 32-314 (410)
21 KOG2144 Tyrosyl-tRNA synthetas 100.0 9.6E-49 2.1E-53 375.1 18.3 267 77-381 33-334 (360)
22 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 5.2E-44 1.1E-48 364.4 21.7 250 78-373 30-294 (377)
23 KOG2145 Cytoplasmic tryptophan 100.0 4.1E-44 9E-49 343.3 12.3 276 77-383 84-383 (397)
24 PTZ00348 tyrosyl-tRNA syntheta 100.0 1.4E-40 3.1E-45 357.5 22.2 225 110-379 408-661 (682)
25 COG0162 TyrS Tyrosyl-tRNA synt 100.0 5.8E-36 1.3E-40 305.1 19.6 271 78-382 32-358 (401)
26 KOG2623 Tyrosyl-tRNA synthetas 99.8 4.1E-19 9E-24 177.3 17.3 257 78-374 63-352 (467)
27 cd00808 GluRS_core catalytic c 99.6 7.5E-15 1.6E-19 141.6 14.3 171 86-310 9-191 (239)
28 cd00802 class_I_aaRS_core cata 99.4 6.8E-13 1.5E-17 117.8 11.1 63 204-288 78-143 (143)
29 cd00418 GlxRS_core catalytic c 98.9 3.3E-08 7.2E-13 95.1 14.0 168 86-309 9-181 (230)
30 PRK00750 lysK lysyl-tRNA synth 98.7 1.4E-06 3E-11 93.0 21.7 71 213-309 231-308 (510)
31 cd00674 LysRS_core_class_I cat 98.7 4.8E-07 1E-11 92.3 16.3 191 78-299 20-288 (353)
32 PRK05710 glutamyl-Q tRNA(Asp) 98.2 3.4E-06 7.5E-11 84.2 8.9 173 86-288 13-241 (299)
33 TIGR00464 gltX_bact glutamyl-t 98.2 0.00011 2.4E-09 77.9 19.9 191 86-310 9-270 (470)
34 PRK14895 gltX glutamyl-tRNA sy 98.2 3.1E-05 6.8E-10 82.4 15.3 197 80-310 4-269 (513)
35 cd02156 nt_trans nucleotidyl t 98.2 7.6E-06 1.6E-10 69.0 8.6 57 81-141 2-58 (105)
36 PRK01406 gltX glutamyl-tRNA sy 98.1 9.9E-05 2.2E-09 78.3 17.7 193 86-310 12-280 (476)
37 PLN02627 glutamyl-tRNA synthet 98.0 0.00073 1.6E-08 72.4 21.1 196 83-310 50-322 (535)
38 TIGR00467 lysS_arch lysyl-tRNA 98.0 5.3E-05 1.2E-09 81.0 12.6 80 78-160 19-128 (515)
39 PRK12410 glutamylglutaminyl-tR 97.8 0.00045 9.7E-09 72.4 15.1 90 86-182 7-104 (433)
40 TIGR03838 queuosine_YadB gluta 97.8 0.00031 6.6E-09 69.5 12.8 174 86-289 8-235 (272)
41 PRK12558 glutamyl-tRNA synthet 97.8 0.00064 1.4E-08 71.5 15.8 191 86-311 10-270 (445)
42 PF01921 tRNA-synt_1f: tRNA sy 97.8 0.00017 3.8E-09 73.5 11.1 75 209-308 227-309 (360)
43 cd09287 GluRS_non_core catalyt 97.7 0.00016 3.5E-09 70.2 9.2 161 83-288 6-171 (240)
44 cd00807 GlnRS_core catalytic c 97.6 0.00027 5.9E-09 68.5 9.2 153 86-288 9-169 (238)
45 COG1384 LysS Lysyl-tRNA synthe 97.6 0.00011 2.5E-09 77.3 6.7 81 77-160 19-131 (521)
46 cd00668 Ile_Leu_Val_MetRS_core 97.6 0.00046 1E-08 69.0 10.8 63 87-150 11-100 (312)
47 PLN03233 putative glutamate-tR 97.5 0.00034 7.3E-09 74.8 9.3 93 81-180 12-114 (523)
48 PRK00260 cysS cysteinyl-tRNA s 97.5 0.008 1.7E-07 63.7 19.3 73 78-150 23-110 (463)
49 COG0008 GlnS Glutamyl- and glu 97.5 0.0004 8.6E-09 73.6 9.1 179 81-289 10-256 (472)
50 PTZ00402 glutamyl-tRNA synthet 97.4 0.00091 2E-08 72.4 10.8 179 80-288 52-293 (601)
51 PF00749 tRNA-synt_1c: tRNA sy 97.3 0.0018 4E-08 65.2 10.7 91 86-182 9-107 (314)
52 PRK04156 gltX glutamyl-tRNA sy 97.3 0.002 4.2E-08 69.7 11.5 180 79-288 102-343 (567)
53 cd00672 CysRS_core catalytic c 97.3 0.0026 5.7E-08 60.7 11.0 71 79-149 22-105 (213)
54 cd00671 ArgRS_core catalytic c 97.2 0.00093 2E-08 63.4 7.8 147 82-241 6-184 (212)
55 PRK01611 argS arginyl-tRNA syn 97.2 0.00058 1.3E-08 73.0 6.3 188 81-303 116-339 (507)
56 cd00812 LeuRS_core catalytic c 97.1 0.0021 4.5E-08 64.7 8.9 80 87-167 11-103 (314)
57 PLN02907 glutamate-tRNA ligase 97.0 0.0031 6.7E-08 70.2 10.2 94 80-180 213-316 (722)
58 PLN02859 glutamine-tRNA ligase 97.0 0.0025 5.3E-08 70.9 9.2 89 85-180 271-367 (788)
59 PRK05347 glutaminyl-tRNA synth 95.8 0.038 8.2E-07 59.7 9.1 95 81-181 30-134 (554)
60 PTZ00437 glutaminyl-tRNA synth 95.7 0.034 7.4E-07 60.1 8.0 91 84-181 57-155 (574)
61 TIGR00463 gltX_arch glutamyl-t 95.6 0.039 8.5E-07 59.8 8.1 93 80-180 93-196 (560)
62 TIGR00435 cysS cysteinyl-tRNA 95.6 0.14 3.1E-06 54.4 12.3 73 79-151 23-108 (465)
63 TIGR00440 glnS glutaminyl-tRNA 95.5 0.05 1.1E-06 58.5 8.4 91 86-182 8-106 (522)
64 PRK14703 glutaminyl-tRNA synth 95.1 0.075 1.6E-06 59.7 8.6 96 81-182 32-137 (771)
65 PLN02946 cysteine-tRNA ligase 93.9 0.65 1.4E-05 50.5 12.1 72 78-149 80-165 (557)
66 COG0143 MetG Methionyl-tRNA sy 92.3 0.42 9.1E-06 52.0 7.8 77 86-165 15-104 (558)
67 PRK00133 metG methionyl-tRNA s 92.2 0.44 9.6E-06 52.9 8.0 84 78-164 3-100 (673)
68 PF09334 tRNA-synt_1g: tRNA sy 91.8 0.55 1.2E-05 48.9 7.8 76 86-164 9-97 (391)
69 PLN02224 methionine-tRNA ligas 91.2 1.1 2.3E-05 49.5 9.6 73 78-150 70-156 (616)
70 TIGR00234 tyrS tyrosyl-tRNA sy 91.0 0.54 1.2E-05 48.8 6.7 56 272-348 212-267 (377)
71 PRK12268 methionyl-tRNA synthe 90.4 0.78 1.7E-05 49.6 7.6 73 79-151 4-92 (556)
72 PLN02610 probable methionyl-tR 89.6 0.79 1.7E-05 52.1 7.1 86 78-166 18-118 (801)
73 PRK00390 leuS leucyl-tRNA synt 87.7 1.6 3.5E-05 49.6 7.9 72 78-150 33-119 (805)
74 PRK12300 leuS leucyl-tRNA synt 87.0 2.9 6.3E-05 48.2 9.5 70 215-310 529-606 (897)
75 PRK11893 methionyl-tRNA synthe 84.7 2.5 5.4E-05 45.0 7.1 66 86-151 11-89 (511)
76 TIGR00392 ileS isoleucyl-tRNA 84.5 4.3 9.3E-05 46.5 9.3 73 215-311 563-641 (861)
77 cd00814 MetRS_core catalytic c 84.2 2.1 4.5E-05 43.1 5.9 65 87-151 11-88 (319)
78 cd00818 IleRS_core catalytic c 82.8 1.1 2.5E-05 45.5 3.4 36 87-122 12-52 (338)
79 COG0495 LeuS Leucyl-tRNA synth 82.8 2.2 4.7E-05 48.5 5.8 82 77-159 34-130 (814)
80 PRK05743 ileS isoleucyl-tRNA s 82.5 0.9 1.9E-05 52.4 2.8 59 214-298 543-604 (912)
81 PRK12267 methionyl-tRNA synthe 82.5 3 6.4E-05 46.2 6.7 64 87-150 15-91 (648)
82 cd00817 ValRS_core catalytic c 82.3 0.87 1.9E-05 47.1 2.4 36 87-122 12-52 (382)
83 PRK12267 methionyl-tRNA synthe 82.0 8 0.00017 42.9 9.9 70 216-310 254-328 (648)
84 PRK06039 ileS isoleucyl-tRNA s 81.4 8 0.00017 45.1 9.9 62 215-299 544-605 (975)
85 TIGR00398 metG methionyl-tRNA 81.3 2.8 6.2E-05 45.0 5.9 65 87-151 10-87 (530)
86 COG0495 LeuS Leucyl-tRNA synth 80.1 9.6 0.00021 43.4 9.7 76 216-311 526-609 (814)
87 TIGR00396 leuS_bact leucyl-tRN 79.5 3.6 7.9E-05 47.1 6.3 72 79-150 31-116 (842)
88 PRK14900 valS valyl-tRNA synth 79.4 1.5 3.3E-05 51.2 3.3 72 215-310 490-567 (1052)
89 cd00817 ValRS_core catalytic c 78.9 2.4 5.2E-05 43.9 4.3 60 216-299 296-356 (382)
90 KOG1147 Glutamyl-tRNA syntheta 78.8 5.8 0.00013 42.9 7.0 73 80-161 200-276 (712)
91 PLN02563 aminoacyl-tRNA ligase 78.7 10 0.00022 44.1 9.7 72 79-150 112-198 (963)
92 PRK11893 methionyl-tRNA synthe 78.6 1.2 2.5E-05 47.5 1.9 70 216-310 254-328 (511)
93 TIGR00456 argS arginyl-tRNA sy 78.5 1.8 4E-05 47.1 3.4 72 208-306 312-392 (566)
94 PLN02882 aminoacyl-tRNA ligase 77.1 12 0.00027 44.3 9.9 76 198-297 548-625 (1159)
95 TIGR00395 leuS_arch leucyl-tRN 76.6 1.4 3.1E-05 50.9 2.0 71 215-311 572-650 (938)
96 cd00818 IleRS_core catalytic c 76.2 5.8 0.00012 40.4 6.1 58 216-299 252-312 (338)
97 PRK14536 cysS cysteinyl-tRNA s 73.7 19 0.00042 38.8 9.4 73 78-150 23-119 (490)
98 PRK12418 cysteinyl-tRNA synthe 73.1 3.1 6.8E-05 43.3 3.3 71 79-149 10-95 (384)
99 PTZ00399 cysteinyl-tRNA-synthe 73.0 22 0.00049 39.6 10.1 81 205-309 257-343 (651)
100 KOG0436 Methionyl-tRNA synthet 72.8 12 0.00026 39.6 7.2 65 86-150 49-126 (578)
101 PRK05729 valS valyl-tRNA synth 72.6 2.5 5.4E-05 48.5 2.6 72 215-310 472-549 (874)
102 PF00133 tRNA-synt_1: tRNA syn 71.8 2.7 5.8E-05 46.2 2.6 59 215-297 513-572 (601)
103 cd00814 MetRS_core catalytic c 70.6 5 0.00011 40.3 4.0 59 216-299 235-293 (319)
104 PRK13804 ileS isoleucyl-tRNA s 70.5 2.5 5.4E-05 49.1 2.0 16 213-228 580-595 (961)
105 PRK00390 leuS leucyl-tRNA synt 70.2 26 0.00057 40.0 10.0 25 215-239 522-547 (805)
106 PRK13208 valS valyl-tRNA synth 69.8 3.7 8E-05 46.6 3.2 70 216-309 486-561 (800)
107 COG0215 CysS Cysteinyl-tRNA sy 69.2 3.8 8.1E-05 43.6 2.8 78 205-306 210-293 (464)
108 TIGR00422 valS valyl-tRNA synt 67.6 4.2 9E-05 46.6 3.0 72 215-310 477-554 (861)
109 PLN02959 aminoacyl-tRNA ligase 67.4 4.7 0.0001 47.5 3.4 60 215-299 670-731 (1084)
110 PRK14535 cysS cysteinyl-tRNA s 66.3 21 0.00046 40.0 7.9 73 78-150 248-334 (699)
111 TIGR03447 mycothiol_MshC cyste 65.4 5.2 0.00011 42.1 3.0 71 78-148 36-120 (411)
112 PLN02943 aminoacyl-tRNA ligase 65.2 5.3 0.00011 46.4 3.2 71 215-310 535-612 (958)
113 PLN02943 aminoacyl-tRNA ligase 64.6 15 0.00032 42.8 6.8 45 79-123 90-140 (958)
114 PTZ00419 valyl-tRNA synthetase 64.4 8.7 0.00019 44.8 4.9 44 79-122 62-111 (995)
115 COG0060 IleS Isoleucyl-tRNA sy 64.1 24 0.00052 40.9 8.1 26 273-307 594-619 (933)
116 PRK13208 valS valyl-tRNA synth 63.4 9.6 0.00021 43.3 4.9 73 78-150 39-138 (800)
117 PLN02660 pantoate--beta-alanin 62.6 30 0.00064 34.7 7.6 69 215-313 145-213 (284)
118 PLN02381 valyl-tRNA synthetase 61.8 6 0.00013 46.5 2.9 60 215-299 607-668 (1066)
119 PTZ00419 valyl-tRNA synthetase 61.6 7 0.00015 45.6 3.4 60 215-298 537-597 (995)
120 PLN02843 isoleucyl-tRNA synthe 61.5 5.9 0.00013 46.2 2.8 16 213-228 561-576 (974)
121 PLN02286 arginine-tRNA ligase 61.3 9.3 0.0002 41.9 4.1 66 218-303 330-395 (576)
122 PLN02224 methionine-tRNA ligas 61.2 20 0.00043 39.7 6.7 71 216-311 321-396 (616)
123 PLN02563 aminoacyl-tRNA ligase 60.2 6.4 0.00014 45.8 2.7 27 215-241 615-642 (963)
124 PF01406 tRNA-synt_1e: tRNA sy 60.1 6.3 0.00014 39.7 2.4 70 205-299 195-265 (300)
125 cd02168 NMNAT_Nudix Nicotinami 59.7 38 0.00082 31.5 7.4 75 85-169 8-85 (181)
126 COG0525 ValS Valyl-tRNA synthe 59.4 43 0.00093 38.6 9.0 22 273-299 517-538 (877)
127 PRK12268 methionyl-tRNA synthe 57.6 6.2 0.00013 42.7 2.0 69 218-310 289-363 (556)
128 KOG1149 Glutamyl-tRNA syntheta 57.2 19 0.00041 38.2 5.2 98 79-182 34-147 (524)
129 COG0018 ArgS Arginyl-tRNA synt 57.1 8.8 0.00019 42.1 3.0 67 218-307 337-404 (577)
130 TIGR00396 leuS_bact leucyl-tRN 57.1 7.2 0.00016 44.7 2.5 25 215-239 519-544 (842)
131 PLN02843 isoleucyl-tRNA synthe 56.5 17 0.00037 42.4 5.4 74 78-151 33-136 (974)
132 COG0143 MetG Methionyl-tRNA sy 54.4 54 0.0012 36.0 8.4 56 219-299 291-346 (558)
133 PRK14536 cysS cysteinyl-tRNA s 53.3 8.8 0.00019 41.3 2.3 69 205-298 222-291 (490)
134 TIGR00398 metG methionyl-tRNA 52.8 9.6 0.00021 41.0 2.5 55 219-299 285-340 (530)
135 TIGR00018 panC pantoate--beta- 51.6 66 0.0014 32.2 8.0 68 216-313 143-210 (282)
136 PLN02610 probable methionyl-tR 51.4 52 0.0011 37.7 8.1 58 219-299 304-361 (801)
137 TIGR00422 valS valyl-tRNA synt 48.9 11 0.00023 43.4 2.1 45 78-122 34-84 (861)
138 COG0525 ValS Valyl-tRNA synthe 48.0 12 0.00026 42.9 2.3 36 87-122 44-83 (877)
139 PF05957 DUF883: Bacterial pro 46.3 94 0.002 25.4 6.9 57 356-412 14-71 (94)
140 KOG0435 Leucyl-tRNA synthetase 46.3 35 0.00076 38.2 5.4 76 72-148 52-142 (876)
141 PRK12451 arginyl-tRNA syntheta 46.1 20 0.00044 39.1 3.7 62 217-302 326-387 (562)
142 COG2442 Uncharacterized conser 44.7 50 0.0011 26.7 4.8 43 325-369 29-71 (79)
143 PF00750 tRNA-synt_1d: tRNA sy 44.3 10 0.00022 38.9 1.0 73 217-310 240-312 (354)
144 COG0018 ArgS Arginyl-tRNA synt 42.9 24 0.00053 38.8 3.7 42 82-123 123-170 (577)
145 PRK05729 valS valyl-tRNA synth 42.9 14 0.00031 42.4 2.0 44 79-122 38-87 (874)
146 PF00133 tRNA-synt_1: tRNA syn 42.7 27 0.00058 38.4 4.0 46 78-123 24-75 (601)
147 PRK14900 valS valyl-tRNA synth 42.3 15 0.00034 43.1 2.2 45 78-122 49-99 (1052)
148 PF00750 tRNA-synt_1d: tRNA sy 42.2 31 0.00068 35.3 4.2 40 82-121 26-71 (354)
149 PF09334 tRNA-synt_1g: tRNA sy 42.1 7.8 0.00017 40.3 -0.2 55 219-298 285-339 (391)
150 TIGR00456 argS arginyl-tRNA sy 41.5 26 0.00057 38.3 3.7 42 80-121 116-163 (566)
151 PTZ00427 isoleucine-tRNA ligas 40.7 21 0.00046 42.6 2.9 33 198-230 653-687 (1205)
152 PF02662 FlpD: Methyl-viologen 40.4 1.2E+02 0.0025 26.5 6.9 71 83-159 32-103 (124)
153 PF04048 Sec8_exocyst: Sec8 ex 39.9 2.7E+02 0.0058 24.7 10.9 85 327-417 19-105 (142)
154 KOG0433 Isoleucyl-tRNA synthet 39.8 1.7E+02 0.0036 33.4 9.3 166 217-414 567-776 (937)
155 TIGR03447 mycothiol_MshC cyste 39.5 1.1E+02 0.0024 32.3 7.8 69 205-297 230-299 (411)
156 cd02166 NMNAT_Archaea Nicotina 39.2 1.4E+02 0.0031 26.9 7.6 65 85-160 8-77 (163)
157 PLN02381 valyl-tRNA synthetase 39.1 20 0.00043 42.3 2.4 45 78-122 129-179 (1066)
158 TIGR00392 ileS isoleucyl-tRNA 38.0 21 0.00045 41.0 2.3 45 78-122 37-87 (861)
159 PRK00133 metG methionyl-tRNA s 36.4 15 0.00032 41.0 0.8 43 260-310 311-358 (673)
160 PRK05743 ileS isoleucyl-tRNA s 34.2 24 0.00053 40.8 2.1 73 79-151 51-152 (912)
161 PF04255 DUF433: Protein of un 33.8 51 0.0011 24.5 3.1 38 325-364 17-54 (56)
162 TIGR00395 leuS_arch leucyl-tRN 33.2 23 0.0005 41.1 1.7 37 78-114 26-67 (938)
163 PRK12451 arginyl-tRNA syntheta 32.2 42 0.00091 36.7 3.4 40 82-121 119-164 (562)
164 PLN02286 arginine-tRNA ligase 31.4 37 0.0008 37.3 2.8 40 82-121 123-168 (576)
165 PRK14534 cysS cysteinyl-tRNA s 30.7 28 0.0006 37.5 1.7 73 78-150 21-117 (481)
166 PRK10404 hypothetical protein; 30.0 2.4E+02 0.0052 23.8 6.9 56 357-412 22-78 (101)
167 PLN02959 aminoacyl-tRNA ligase 29.0 32 0.0007 40.7 2.0 34 87-121 56-93 (1084)
168 KOG0437 Leucyl-tRNA synthetase 28.3 1E+02 0.0023 35.1 5.5 31 361-396 789-819 (1080)
169 PRK14535 cysS cysteinyl-tRNA s 28.2 3.2E+02 0.0069 31.0 9.3 33 205-239 435-468 (699)
170 cd00560 PanC Pantoate-beta-ala 27.8 68 0.0015 32.0 3.7 68 216-313 141-208 (277)
171 KOG1148 Glutaminyl-tRNA synthe 27.4 1.1E+02 0.0025 33.8 5.5 99 79-186 247-357 (764)
172 PRK06039 ileS isoleucyl-tRNA s 27.4 40 0.00088 39.4 2.4 45 78-122 42-92 (975)
173 PLN02413 choline-phosphate cyt 27.3 1.2E+02 0.0025 30.7 5.2 36 68-105 17-52 (294)
174 PRK13804 ileS isoleucyl-tRNA s 26.7 43 0.00094 39.1 2.5 45 78-122 55-105 (961)
175 COG4320 Uncharacterized protei 26.6 69 0.0015 32.9 3.5 28 88-121 62-89 (410)
176 PHA01929 putative scaffolding 26.3 4.8E+02 0.01 26.1 9.0 29 324-352 116-144 (306)
177 PRK13477 bifunctional pantoate 26.0 3.4E+02 0.0074 29.5 8.9 26 216-241 141-166 (512)
178 PRK14534 cysS cysteinyl-tRNA s 25.9 1.9E+02 0.0041 31.2 6.9 66 208-298 225-291 (481)
179 KOG2007 Cysteinyl-tRNA synthet 25.6 41 0.00089 36.4 1.8 81 203-309 245-333 (586)
180 PF09551 Spore_II_R: Stage II 24.7 2.4E+02 0.0053 25.0 6.2 49 357-409 19-67 (130)
181 PRK12418 cysteinyl-tRNA synthe 24.2 2.5E+02 0.0055 29.4 7.3 70 205-298 203-273 (384)
182 PRK01153 nicotinamide-nucleoti 24.1 3E+02 0.0066 25.3 7.1 65 85-160 9-78 (174)
183 COG4575 ElaB Uncharacterized c 23.7 2E+02 0.0044 24.6 5.3 22 394-415 37-58 (104)
184 PRK00380 panC pantoate--beta-a 23.3 75 0.0016 31.7 3.1 27 215-241 139-165 (281)
185 COG3783 CybC Soluble cytochrom 23.1 1.5E+02 0.0033 25.0 4.4 42 372-413 53-94 (100)
186 PTZ00427 isoleucine-tRNA ligas 22.5 58 0.0013 39.1 2.5 44 79-122 104-153 (1205)
187 PLN02882 aminoacyl-tRNA ligase 21.8 60 0.0013 38.8 2.4 45 78-122 39-89 (1159)
188 KOG0435 Leucyl-tRNA synthetase 21.7 4.3E+02 0.0093 30.1 8.6 48 282-333 616-668 (876)
189 COG0162 TyrS Tyrosyl-tRNA synt 20.3 1.2E+02 0.0027 31.9 4.1 60 301-376 242-305 (401)
190 PF12057 DUF3538: Domain of un 20.3 65 0.0014 28.2 1.7 46 366-414 10-55 (120)
No 1
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.2e-102 Score=790.63 Aligned_cols=362 Identities=79% Similarity=1.220 Sum_probs=336.3
Q ss_pred ceeeeccCCCCCCCCCCCCCCCceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHH
Q 014776 57 RCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136 (419)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~ 136 (419)
+|+++.++..+.++.+.+.-.+++|||||||||.+|||||+|++++|++||+.++++||||||||+|+++++++++++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~m~~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~~~~~~~~IADlHAlt~~~~~~~lr~~~~ 104 (389)
T PLN02886 25 CCSAATAATAPEKEAPPKVARKKRVVSGVQPTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATR 104 (389)
T ss_pred hhhhhhccCCCccCCCcccCCCCeEEEEECCCCccHHHHHHHHHHHHHHHhccCCEEEEEecHHHhhCCCCHHHHHHHHH
Confidence 34444444444445544444567899999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHcCcCCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcc
Q 014776 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQ 216 (419)
Q Consensus 137 ~~~a~~lA~GlDp~k~~if~qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~ 216 (419)
+++++|+||||||+|++||+||++++|++|+|+|+|.+++++|+||+|||++.+..+.+++++|+|+||+|||||||+|+
T Consensus 105 ~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~ 184 (389)
T PLN02886 105 STAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQ 184 (389)
T ss_pred HHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999998776546789999999999999999999
Q ss_pred cceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCcee
Q 014776 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (419)
Q Consensus 217 adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 296 (419)
+|+||||+||+||+|||||||+|||+.||...++++|.+.+.+|++|++++++.+++||||+||++|||||+|+++|+|+
T Consensus 185 a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~ 264 (389)
T PLN02886 185 ADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRIN 264 (389)
T ss_pred CCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEE
Confidence 99999999999999999999999999998766667776666799999999987668999999888899999998789999
Q ss_pred cCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCCcchHHHHHHHHHHHhhhHHHH
Q 014776 297 LLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQV 376 (419)
Q Consensus 297 L~Dspe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~~~~~~eel~~~~~~l~~~dlK~~La~~I~~~L~pire 376 (419)
|+|+|++|++|||+|+||+.+++++++|++|+++|++.+|..+++.+++|++++|+++++++||+.|+++|+++|+||||
T Consensus 265 L~Ds~e~I~kKI~~a~TD~~~~i~~~~p~~p~v~nl~~i~~~~~~~~~eei~~~~~~~~~g~~K~~Lae~I~~~L~Pire 344 (389)
T PLN02886 265 LLDPPDVIANKIKRCKTDSFPGLEFDNPERPECNNLLSIYQLVTGKTKEEVLAECGDMRWGDFKPLLTDALIEHLSPIQV 344 (389)
T ss_pred ecCCHHHHHHHHhcCCCCCCCCccCCCCCCcccccHHHHHHHccCCCHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 014776 377 RYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAMGFLR 418 (419)
Q Consensus 377 r~~~~~~d~~~l~~iL~~GaekAr~iA~~tl~~Vr~a~Gl~~ 418 (419)
||+++++|++||++||++|++|||++|++||++||++|||.+
T Consensus 345 r~~~l~~d~~~l~~iL~~Ga~kAr~~A~~tl~~vr~~~Gl~~ 386 (389)
T PLN02886 345 RYEEIMSDPSYLDSVLKEGADAAAEIADRTLANVYQAMGFVQ 386 (389)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999963
No 2
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.8e-100 Score=724.43 Aligned_cols=331 Identities=54% Similarity=0.850 Sum_probs=320.9
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhccc----EEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceE
Q 014776 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYE----TLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS 153 (419)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~~~----~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~ 153 (419)
+.++||||||||.+|||||+|++++|++||+.++ |+|+|+|+||+|.|+++.++++++.++++.++|||+||+|+.
T Consensus 13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~ 92 (347)
T KOG2713|consen 13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSS 92 (347)
T ss_pred cceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccce
Confidence 6799999999999999999999999999999864 799999999999999999999999999999999999999999
Q ss_pred EEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchHHHHHHH
Q 014776 154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 233 (419)
Q Consensus 154 if~qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~eLa 233 (419)
+|+||+||+|+|+.|+|+|.++++||+||+|||+|+.+.+.+.+++|+|+||+|||||||+|++++||||+||.||+||+
T Consensus 93 lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~~~~~~vGLftYPvLqAADILLYksThVPVGeDQsQHleL~ 172 (347)
T KOG2713|consen 93 LFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFKVGDVPVGLFTYPVLQAADILLYKSTHVPVGEDQSQHLELA 172 (347)
T ss_pred eeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhccCccceeeecchhHhhhhHhhhccccccCCccHHHHHHHH
Confidence 99999999999999999999999999999999999876655789999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhccC
Q 014776 234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 313 (419)
Q Consensus 234 Rdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~T 313 (419)
|++|++||+.||+ ++|++|+.++...+++|+||+||.+|||||+|++.++|+|+|+|++|.+||+||.|
T Consensus 173 r~lA~~fN~~Y~~-----------~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~ka~T 241 (347)
T KOG2713|consen 173 RHLAQAFNKTYGT-----------EIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIKKAQT 241 (347)
T ss_pred HHHHHHHhhhccC-----------eeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHHHHhc
Confidence 9999999999996 67999999998766899999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCCcchHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHHHH
Q 014776 314 DSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLA 393 (419)
Q Consensus 314 d~~~~i~~~~~~rp~v~~ll~i~~~~~~~~~eel~~~~~~l~~~dlK~~La~~I~~~L~pirer~~~~~~d~~~l~~iL~ 393 (419)
|....++||+.+||+++|+++||+.+++.+++|+.+++.+++++++|..||++|+++|.|||++|+++.++++|+++||+
T Consensus 242 D~~~~vtYd~~~RpgvsNLlni~aaVt~~s~eeV~~~~a~~~~~~fK~~vaeAvie~L~PIr~~fee~~~~~~~l~kvl~ 321 (347)
T KOG2713|consen 242 DNTSGVTYDPANRPGVSNLLNIYAAVTGKSIEEVVEESANMSTADFKDNVAEAVIEHLAPIRTEFEELINEPEYLDKVLE 321 (347)
T ss_pred ccccceeeCCccccchhHHHHHHHHHcCCCHHHHHHHhccCCHHHHHHHHHHHHHHHhccHHHHHHHHhcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCC
Q 014776 394 DGAAKAADIADATLNNVYQAMGFLRR 419 (419)
Q Consensus 394 ~GaekAr~iA~~tl~~Vr~a~Gl~~~ 419 (419)
+|++|||++|.+||.+||+.|||.-+
T Consensus 322 ~GaekAre~A~~~l~~ik~~~Gf~~~ 347 (347)
T KOG2713|consen 322 EGAEKARELAAKNLEEIKQLMGFLQR 347 (347)
T ss_pred HhHHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999743
No 3
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.7e-94 Score=736.03 Aligned_cols=321 Identities=36% Similarity=0.603 Sum_probs=300.3
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhh--cccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEE
Q 014776 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (419)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~--~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if 155 (419)
..+|||||||||.+|||||+|++++|+++|+ .++|+||||||||+|++++++++++++++++++|+||||||+|++||
T Consensus 2 ~~rvlSGiqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr~~~~e~aa~~LA~GlDPek~~if 81 (431)
T PRK12284 2 TTRVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLEIAATWLAAGLDPERVTFY 81 (431)
T ss_pred ceEEEEEecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHHHHHHHHHHHHHHhCCCccceEEE
Confidence 3589999999999999999999999999986 58999999999999988899999999999999999999999999999
Q ss_pred EcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhh---C---CCCccchhhhhhHHHHHhhhhcccceecccCchHHH
Q 014776 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA---G---GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (419)
Q Consensus 156 ~qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~---~---~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h 229 (419)
+||++|+|+||+|+|+|.+++++|+||++||++.... + .+++++|+|+||+|||||||+|++|+||||.||+||
T Consensus 82 ~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~ad~VPVG~DQ~qH 161 (431)
T PRK12284 82 RQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQH 161 (431)
T ss_pred ECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCCCEEEEcchhHHH
Confidence 9999999999999999999999999999999875432 1 145899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhh
Q 014776 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (419)
Q Consensus 230 ~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~ 309 (419)
+|||||||+|||+.||. ++|++|++++...+++|||| +| +|||||+ +|+|+|+|+|++|++|||
T Consensus 162 lELaRdIA~rFN~~yg~-----------~~F~~Pe~~i~~~~~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~ 225 (431)
T PRK12284 162 IEMARDIAQRFNHLYGG-----------EFFVLPEAVIEESVATLPGL-DG-RKMSKSY---DNTIPLFAPREELKKAIF 225 (431)
T ss_pred HHHHHHHHHHHhhhcCC-----------cccCCCccccccccccccCC-CC-ccccCCC---CCEeeecCCHHHHHHHHh
Confidence 99999999999999974 46999999998767899999 56 6999998 489999999999999999
Q ss_pred hccCCCCCCcccCCCCCCccchHHHHHHhcCC-CCHHHHHHHHh-cCCcchHHHHHHHHHHHhhhHHHHHHHHHhcChHH
Q 014776 310 RCKTDSSAGLEFDNLERPECNNLLSIYQLISG-KTKGEVAEECQ-NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAY 387 (419)
Q Consensus 310 kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~~~-~~~eel~~~~~-~l~~~dlK~~La~~I~~~L~pirer~~~~~~d~~~ 387 (419)
+|+||+.. .+++++|++||+|+||++|++ +++++++++|. +++|++||+.|++.|+++|+||||||+++++|++|
T Consensus 226 ~A~TDs~~---~~~~~~pe~snLl~i~~~~~~~~~~eel~~~~~~g~~~g~~K~~Lae~i~~~L~PiRer~~~l~~d~~~ 302 (431)
T PRK12284 226 SIVTDSRA---PGEPKDTEGSALFQLYQAFATPEETAAFRQALADGIGWGDAKQRLFERIDRELAPMRERYEALIARPAD 302 (431)
T ss_pred cCCCCCCC---CCCCCCCCcchHHHHHHHhCCcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 99999875 245789999999999999975 67999999997 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 014776 388 LDKVLADGAAKAADIADATLNNVYQAMGFL 417 (419)
Q Consensus 388 l~~iL~~GaekAr~iA~~tl~~Vr~a~Gl~ 417 (419)
|++||++|++|||++|++||++||++|||.
T Consensus 303 l~~iL~~Ga~kAr~~A~~tl~~vr~~~Gl~ 332 (431)
T PRK12284 303 IEDILLAGAAKARRIATPFLAELREAVGLR 332 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence 999999999999999999999999999995
No 4
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.6e-93 Score=716.29 Aligned_cols=328 Identities=57% Similarity=0.939 Sum_probs=311.4
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 014776 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (419)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~q 157 (419)
++++||||+|||.+|||||+|++++|++||+.++++|+||||||+|++.+++++++++++++++|+|||+||+|+.||+|
T Consensus 1 ~~~v~~G~~PTG~lHLG~~~g~~~~~~~lQ~~~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~q 80 (333)
T PRK00927 1 KKRVLSGIQPTGKLHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQ 80 (333)
T ss_pred CCEEEEeeCCCccchHHhHHHHHHHHHHHHhcCCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEe
Confidence 36899999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchHHHHHHHHHHH
Q 014776 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (419)
Q Consensus 158 S~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~eLaRdia 237 (419)
|+|++|.+++|+++|.+++++|+|+++||++....+ +++++|+|+||+|||||||++++|+||||.||+||+|||||||
T Consensus 81 S~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia 159 (333)
T PRK00927 81 SHVPEHAELAWILNCITPLGELERMTQFKDKSAKQK-ENVSAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIA 159 (333)
T ss_pred CCCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhccC-CCCCcHhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHH
Confidence 999999999999999999999999999998864432 6889999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhccCCCCC
Q 014776 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317 (419)
Q Consensus 238 ~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~ 317 (419)
++||++|| .+|++|+++++..+++||||+++++|||||+|++.|+|+|+|+|++|++|||+|+||+..
T Consensus 160 ~~~n~~~~------------~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~a~td~~~ 227 (333)
T PRK00927 160 RRFNNLYG------------EVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDSER 227 (333)
T ss_pred HHhhhhcc------------ccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHhCCCCCCc
Confidence 99999998 569999999977667999997666799999987679999999999999999999999976
Q ss_pred --CcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHHHH
Q 014776 318 --GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLA 393 (419)
Q Consensus 318 --~i~~~~~~rp~v~~ll~i~~~~~~~~~eel~~~~~--~l~~~dlK~~La~~I~~~L~pirer~~~~~~d~~~l~~iL~ 393 (419)
.+.++++++|++||+++||++|+++++++++++|. +++|++||+.|+++|+++|.|+|+||+++++|+++|++||+
T Consensus 228 ~~~~~~~~~~~p~~~~l~~~~~~~~~~~~eel~~~~~~g~~~~~~lK~~la~~i~~~l~pire~~~~~~~~~~~~~~il~ 307 (333)
T PRK00927 228 LREIRYDLPNKPEVSNLLTIYSALSGESIEELEAEYEAGGKGYGDFKKDLAEAVVEFLAPIRERYEELLADPAYLDEILA 307 (333)
T ss_pred ccccccCCCCCCccccHHHHHHHhCCCCHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 45578899999999999999999999999999998 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC
Q 014776 394 DGAAKAADIADATLNNVYQAMGFLR 418 (419)
Q Consensus 394 ~GaekAr~iA~~tl~~Vr~a~Gl~~ 418 (419)
+|++|||++|++||++||++|||.+
T Consensus 308 ~G~~~a~~~a~~~l~~v~~~~g~~~ 332 (333)
T PRK00927 308 EGAEKARAVASKTLKEVREAMGLLR 332 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999964
No 5
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.7e-93 Score=712.15 Aligned_cols=320 Identities=37% Similarity=0.615 Sum_probs=298.7
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhccc--EEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEE
Q 014776 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYE--TLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (419)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~~~--~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if 155 (419)
+.++||||||||.+|||||+|++++|+++|+.++ ++||||||||+|.+++++++++++++++++|+||||||+|++||
T Consensus 3 ~~~v~sGiqPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if 82 (332)
T PRK12556 3 EKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVIFY 82 (332)
T ss_pred CCEEEEEECCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceEEE
Confidence 4699999999999999999999999999998765 99999999999878899999999999999999999999999999
Q ss_pred EcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC------CCCccchhhhhhHHHHHhhhhcccceecccCchHHH
Q 014776 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG------GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (419)
Q Consensus 156 ~qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~------~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h 229 (419)
+||++++|++|+|+++|.+++|||+||+|||++..... ++++++|+|+||+|||||||+|++|+||||+||+||
T Consensus 83 ~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~~~~d~VpvG~DQ~qh 162 (332)
T PRK12556 83 RQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILLFQATHVPVGKDQIQH 162 (332)
T ss_pred ECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhhccCCEEEeccccHHH
Confidence 99999999999999999999999999999999865321 246799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhh
Q 014776 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (419)
Q Consensus 230 ~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~ 309 (419)
+|||||||+|||++|| .+|++|+++++++.+++||| +| +|||||++ |+|+|+|+|++|++||+
T Consensus 163 leLtRdiA~rfn~~yg------------~~f~~P~~~~~~~~~~l~gL-dg-~KMSKS~~---n~I~L~D~p~~I~kKI~ 225 (332)
T PRK12556 163 IEIARDIATYFNHTFG------------DTFTLPEYVIQEEGAILPGL-DG-RKMSKSYG---NVIPLFAEQEKLRKLIF 225 (332)
T ss_pred HHHHHHHHHHHHHhcc------------ccCCCceeccccccccccCC-CC-CCCCCCCC---CcccccCCHHHHHHHHH
Confidence 9999999999999998 57999999986655799999 66 59999984 78999999999999999
Q ss_pred hccCCCCCCcccCCCCCCccchHHHHHHhcCC-CCHHHHHHHHh-cCCcchHHHHHHHHHHHhhhHHHHHHHHHhcChHH
Q 014776 310 RCKTDSSAGLEFDNLERPECNNLLSIYQLISG-KTKGEVAEECQ-NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAY 387 (419)
Q Consensus 310 kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~~~-~~~eel~~~~~-~l~~~dlK~~La~~I~~~L~pirer~~~~~~d~~~ 387 (419)
+|+||+.+ .+.+++|++||+++||++|++ +++++++++|. +++|++||+.|++.|+++|+|+|+||+++++|++|
T Consensus 226 ka~Td~~~---~~~~~~p~~~~l~~i~~~~~~~~~~eei~~~y~~~~~~~~~K~~lae~i~~~l~pire~~~~~~~~~~~ 302 (332)
T PRK12556 226 KIKTDSSL---PNEPKDPETSALFTIYKEFATEEEVQSMREKYETGIGWGDVKKELFRVVDRELAGPREKYAMYMNEPSL 302 (332)
T ss_pred HhccCCCc---ccCCCCcchhHHHHHHHHHCCchhHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 99999866 245789999999999999975 67999999998 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 014776 388 LDKVLADGAAKAADIADATLNNVYQAMGFL 417 (419)
Q Consensus 388 l~~iL~~GaekAr~iA~~tl~~Vr~a~Gl~ 417 (419)
|++||++|++|||++|++||++||++|||.
T Consensus 303 ~~~il~~G~~kA~~~A~~tl~~v~~~~g~~ 332 (332)
T PRK12556 303 LDEALEKGAERAREIAKPNLAEIKKAIGFE 332 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999999999983
No 6
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=8.1e-92 Score=711.08 Aligned_cols=333 Identities=36% Similarity=0.627 Sum_probs=304.8
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCC-CHHHHHHHHHHHHHHHHHcCcCCCceEEEE
Q 014776 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVFV 156 (419)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 156 (419)
+.+|||||||||.+|||||+|++++|+++|+.++++|+||||||+|++. +++++++++++++++|+||||||+|++||+
T Consensus 2 ~~~v~sGiqPSG~~HLGnylG~ik~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~ 81 (398)
T PRK12283 2 PDRVLSGMRPTGRLHLGHYHGVLKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFI 81 (398)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence 3589999999999999999999999999999999999999999999864 999999999999999999999999999999
Q ss_pred cCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCccchhhhhhHHHHHhhhhcccceecccCchHHHHHHHHH
Q 014776 157 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235 (419)
Q Consensus 157 qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~eLaRd 235 (419)
||++++|++|+|+|+|.+++++|+||+|||++..... .++.++|+++||+|||||||+|++|+||||+||+||+|||||
T Consensus 82 QS~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl~~a~iVPVG~DQ~qHleLaRd 161 (398)
T PRK12283 82 QSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTRE 161 (398)
T ss_pred CCCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHhcCCCEeeeccccHHHHHHHHH
Confidence 9999999999999999999999999999999876521 257899999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCCcccc---------c-------------------------------------------------cCCCCC
Q 014776 236 LAERVNYLYGGRKWK---------K-------------------------------------------------LGGRGG 257 (419)
Q Consensus 236 ia~r~n~~~g~~~~~---------k-------------------------------------------------~g~~~~ 257 (419)
||+|||+.||...+. + ..+.++
T Consensus 162 IA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (398)
T PRK12283 162 IARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGK 241 (398)
T ss_pred HHHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhccccccccccCC
Confidence 999999999852111 0 113445
Q ss_pred ccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHH
Q 014776 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQ 337 (419)
Q Consensus 258 ~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~ 337 (419)
.+|+.|+++++. +++|||| || +|||||+ +|+|+|+|+|++|++|||+|+||+.....++ +++|++||+++||+
T Consensus 242 ~~~~~P~~~~~~-~~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~~a~TDs~~~~~~~-~g~Pe~~nl~~i~~ 314 (398)
T PRK12283 242 IILPEPQALLTE-ASKMPGL-DG-QKMSKSY---GNTIGLREDPESVTKKIRTMPTDPARVRRTD-PGDPEKCPVWQLHQ 314 (398)
T ss_pred cccCCCcccccC-CCcccCC-CC-CcCCCCC---CCeeeCcCCHHHHHHHHHhCCCCCcccccCC-CCCCCcCHHHHHHH
Confidence 679999998854 5899999 77 7999996 4899999999999999999999988755544 49999999999999
Q ss_pred hcCCC-CHHHHHHHHh--cCCcchHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 014776 338 LISGK-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAM 414 (419)
Q Consensus 338 ~~~~~-~~eel~~~~~--~l~~~dlK~~La~~I~~~L~pirer~~~~~~d~~~l~~iL~~GaekAr~iA~~tl~~Vr~a~ 414 (419)
+++++ +++++.++|+ +++|++||+.|++.|+++|+|+||||.++++|+++|++||++|++|||++|++||++||++|
T Consensus 315 ~~~~~~~~~~i~~~~~~g~~~~g~~K~~lae~v~e~L~~irer~~~~~~~~~~~~~il~~G~~kA~~~a~~t~~~v~~~~ 394 (398)
T PRK12283 315 VYSDEETKEWVQKGCRSAGIGCLECKQPVIDAILREQQPMRERAQKYEDDPSLVRAIVADGCEKARKVARETMRDVREAM 394 (398)
T ss_pred HhCCChHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99877 5899999997 47889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 014776 415 GFL 417 (419)
Q Consensus 415 Gl~ 417 (419)
||.
T Consensus 395 g~~ 397 (398)
T PRK12283 395 GLS 397 (398)
T ss_pred CCC
Confidence 996
No 7
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=1e-89 Score=689.24 Aligned_cols=324 Identities=34% Similarity=0.524 Sum_probs=304.6
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecC-CCCHHHHHHHHHHHHHHHHHcCcCCCceEEEE
Q 014776 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (419)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 156 (419)
+.++|||++|||.+|||||+|++++|++||++++++|+||||||+|+ +.+++++++++++++++|+|+||||+|++||+
T Consensus 2 ~~~v~sG~~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~ 81 (333)
T PRK12282 2 KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFI 81 (333)
T ss_pred CCEEEEeeCCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEE
Confidence 46899999999999999999999999999999999999999999997 67999999999999999999999999999999
Q ss_pred cCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCccchhhhhhHHHHHhhhhcccceecccCchHHHHHHHHH
Q 014776 157 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235 (419)
Q Consensus 157 qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~eLaRd 235 (419)
||+|++|.++.|+++|.+++++|+|+.+||++....+ .+++++|+++||+||||||++|++|+||||+||+||+|||||
T Consensus 82 qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRd 161 (333)
T PRK12282 82 QSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTRE 161 (333)
T ss_pred CCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHH
Confidence 9999999999999999999999999999998755443 367899999999999999999999999999999999999999
Q ss_pred HHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhccCCC
Q 014776 236 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 315 (419)
Q Consensus 236 ia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~ 315 (419)
+|+|||++||+ ++|..|++++.. +++|||| +|.+|||||++ |+|+|+|+|++|++||++|+||+
T Consensus 162 iA~~~n~~~~~-----------~~~~~p~~~~~~-~~~i~~L-~g~~KMSKS~~---~~I~L~D~pe~I~kKI~~A~td~ 225 (333)
T PRK12282 162 IVRRFNSLYGT-----------DVLVEPEALLPE-AGRLPGL-DGKAKMSKSLG---NAIYLSDDADTIKKKVMSMYTDP 225 (333)
T ss_pred HHHHHhhhcCC-----------ccccCchhcccC-CCcccCC-CCCCcCCCCCC---CeeeeeCCHHHHHHHHHhCcCCC
Confidence 99999999985 568899988865 5799999 66689999984 79999999999999999999998
Q ss_pred CCCcccCCCCCCccchHHHHHHhc--CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHH
Q 014776 316 SAGLEFDNLERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 391 (419)
Q Consensus 316 ~~~i~~~~~~rp~v~~ll~i~~~~--~~~~~eel~~~~~--~l~~~dlK~~La~~I~~~L~pirer~~~~~~d~~~l~~i 391 (419)
.. +.++++++|++||+++|+++| +++++++++++|. +++++|||++|+++|+++|+|+|+||+++++|+++|++|
T Consensus 226 ~~-~~~~~~~~~~~~~l~~~~~~f~~~~~~~e~l~~~y~~g~~~~~dlK~~lae~i~~~l~pirer~~~~~~~~~~~~~v 304 (333)
T PRK12282 226 NH-IRVEDPGKVEGNVVFTYLDAFDPDKAEVAELKAHYQRGGLGDVKCKRYLEEVLQELLAPIRERRAEFAKDPGYVLEI 304 (333)
T ss_pred CC-ccCCCCCCCCcChHHHHHHHhCCCCchHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 53 778899999999999999999 5789999999997 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 014776 392 LADGAAKAADIADATLNNVYQAMGFLR 418 (419)
Q Consensus 392 L~~GaekAr~iA~~tl~~Vr~a~Gl~~ 418 (419)
|+.|++|||++|++||++||++|||.+
T Consensus 305 l~~G~~ka~~~A~~~~~~v~~~~g~~~ 331 (333)
T PRK12282 305 LKAGSEKAREVAAQTLSEVKDAMGLNY 331 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 999999999999999999999999953
No 8
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-90 Score=682.25 Aligned_cols=305 Identities=51% Similarity=0.810 Sum_probs=291.0
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCH--HHHHHHHHHHHHHHHHcCcCCCceE
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDT--QQLSKATRETAAIYLACGIDNSKAS 153 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~--~~i~~~~~~~~a~~lA~GlDp~k~~ 153 (419)
.+++||||+||||.+|||||+|++++|+.+|+. ++|||||||+||+|.+.++ +.+++++++++++|+|+||||+|++
T Consensus 4 ~~~~vlSG~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~ 83 (314)
T COG0180 4 KKFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKST 83 (314)
T ss_pred CCceEEecCCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccE
Confidence 478999999999999999999999999999999 5999999999999998765 9999999999999999999999999
Q ss_pred EEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchHHHHHHH
Q 014776 154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 233 (419)
Q Consensus 154 if~qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~eLa 233 (419)
||+||++++|.||+|+|+|.+++|||+||++||+++.+.+ +++++|+|.||+|||||||+|++++||||.||+||+|||
T Consensus 84 if~QS~v~e~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~-~~~~~Gl~~YPvlqAADILl~~a~~VPVG~DQ~qHleLt 162 (314)
T COG0180 84 IFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG-ESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLELT 162 (314)
T ss_pred EEEccCchHHHHHHHHHHccCcHHHHHhhcCcchhhhccc-ccccccchhccHHHHHHhhhccCCeeccCCCchHHHHHH
Confidence 9999999999999999999999999999999999988765 689999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhccC
Q 014776 234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 313 (419)
Q Consensus 234 Rdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~T 313 (419)
||||+|||+.|| .+|++|+++++.. +++|||+|+ +|||||+|+ |+|+|+|+|++|++||++|+|
T Consensus 163 RDiA~rfn~~y~------------~~f~~P~~~~~~~-~~i~gL~g~-~KMSkS~~n--s~I~L~D~~~~i~kKI~~~~t 226 (314)
T COG0180 163 RDIARRFNHLYG------------EVFPLPEALISKV-ARLPGLDGP-GKMSKSDPN--SAIFLLDDPKTIRKKIKKAAT 226 (314)
T ss_pred HHHHHHHHhhcC------------CccCCccccccCC-CcccCCCCC-CcccccCCC--CeeeccCCHHHHHHHHHHhcc
Confidence 999999999999 6799999999887 899999776 899999985 899999999999999999999
Q ss_pred CCCCCcccCCCCCCccchHHHHHHhcC-CCCHHHHHHHHhc--CCcchHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHH
Q 014776 314 DSSAGLEFDNLERPECNNLLSIYQLIS-GKTKGEVAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDK 390 (419)
Q Consensus 314 d~~~~i~~~~~~rp~v~~ll~i~~~~~-~~~~eel~~~~~~--l~~~dlK~~La~~I~~~L~pirer~~~~~~d~~~l~~ 390 (419)
|+...++++++++|++||+|+||.+|+ +++.++++++|++ ++|++||+.|++.|+++|+|||+||+++.++++++++
T Consensus 227 d~~~~~~~~~~g~Pe~~~l~~~~~~~~~~~~~~ei~~~~~~G~~~~ge~K~~lae~i~~fL~~iqer~~~~~~~~~~l~~ 306 (314)
T COG0180 227 DGPTLIEYRKGGKPEVCNLFEIYSAFFEDDSILEIEAEYRGGELGCGECKKELAEAIQEFLKPIQERREELREDPAYLDD 306 (314)
T ss_pred CCCCccccCCCCCCCcchHHHHHHHhcCCCcHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 996667777889999999999999999 9999999999985 9999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 014776 391 VLADGAAK 398 (419)
Q Consensus 391 iL~~Gaek 398 (419)
+|++|++|
T Consensus 307 il~~g~~k 314 (314)
T COG0180 307 ILRKGAEK 314 (314)
T ss_pred HHhccCCC
Confidence 99999874
No 9
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=1e-87 Score=674.05 Aligned_cols=319 Identities=47% Similarity=0.678 Sum_probs=298.5
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCC--CHHHHHHHHHHHHHHHHHcCcCCCceEE
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKASV 154 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~--~~~~i~~~~~~~~a~~lA~GlDp~k~~i 154 (419)
+++++|||++|||.+|||||+|+++.|..+|..++++|+||||||+|++. +++.++.++++++++|+||||||+|++|
T Consensus 1 ~~~~v~~G~~PTG~~HlG~~l~~~~~~~~~q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i 80 (328)
T TIGR00233 1 KKFRVLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFI 80 (328)
T ss_pred CCCEEEEeeCCCcHhHHHHHHHHHHHHHHHhCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEE
Confidence 36799999999999999999999999998888899999999999999866 8899999999999999999999999999
Q ss_pred EEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchHHHHHHHH
Q 014776 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 234 (419)
Q Consensus 155 f~qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~eLaR 234 (419)
|+||+|++|++|.|+|+|.+|+++|+|+++||++.. .+++++|+|+||+|||||||+|++|+||||+||+||+||||
T Consensus 81 f~qS~~~e~~el~~~l~~~~t~~~l~r~~~~k~k~~---~~~~~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaR 157 (328)
T TIGR00233 81 FLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQ---AENVPIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTR 157 (328)
T ss_pred EEcCCcHHHHHHHHHHHccCCHHHHHhccCcchhcc---CCCCCchhhcchHHHHhhhhhcCCCeeecccccHHHHHHHH
Confidence 999999999999999999999999999999998752 26789999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhccCC
Q 014776 235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 314 (419)
Q Consensus 235 dia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td 314 (419)
|||+|||++|| .+|++|++++++..++|||| +| +|||||+|+ |+|+|+|+|++|++||++|+||
T Consensus 158 dia~r~n~~~~------------~~f~~P~~l~~~~~~~l~gl-~~-~KMSKS~~~--s~I~L~D~~e~I~~KI~~a~td 221 (328)
T TIGR00233 158 DLAERFNKKFK------------NFFPKPESLISKFFPRLMGL-SG-KKMSKSDPN--SAIFLTDTPKQIKKKIRKAATD 221 (328)
T ss_pred HHHHHhhhhcC------------cccCCChhhhccccCCCCCC-CC-CcCCCCCCC--CeEeecCCHHHHHHHHHhcCCC
Confidence 99999999998 57999999998766789999 55 799999974 8999999999999999999999
Q ss_pred CCCCcccCCCCCCccchHHHHHHhcC-----CCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhhHHHHHHHHHhcChHH
Q 014776 315 SSAGLEFDNLERPECNNLLSIYQLIS-----GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAY 387 (419)
Q Consensus 315 ~~~~i~~~~~~rp~v~~ll~i~~~~~-----~~~~eel~~~~~--~l~~~dlK~~La~~I~~~L~pirer~~~~~~d~~~ 387 (419)
+...+.++++++|++++++.+|++++ ++++++++++|. +++|++||+.|+++|+++|+|||+||+++++| +
T Consensus 222 ~~~~~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~lK~~lae~i~~~l~pirer~~~~~~~--~ 299 (328)
T TIGR00233 222 GGRVTLFEHREKGGVPNLLVIYQYLSFFLIDDDKLKEIYEKYKSGKLLYGELKKALIEVLQEFLKEIQERRAEIAEE--I 299 (328)
T ss_pred CCCCcccCcCCCCCCchHHHHHHHhhccCCCcchHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 99888889889999888888888764 346899999996 57999999999999999999999999999987 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014776 388 LDKVLADGAAKAADIADATLNNVYQAMGF 416 (419)
Q Consensus 388 l~~iL~~GaekAr~iA~~tl~~Vr~a~Gl 416 (419)
|+++|..|+++||++|++||++||++|||
T Consensus 300 ~~~~l~~g~~~a~~~a~~~l~~v~~~~g~ 328 (328)
T TIGR00233 300 LDKILEPGAKKARETANKTLADVYKAMGL 328 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999997
No 10
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=3.7e-74 Score=565.16 Aligned_cols=274 Identities=46% Similarity=0.754 Sum_probs=257.9
Q ss_pred eEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCC-CHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 014776 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (419)
Q Consensus 80 ~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~a~~lA~GlDp~k~~if~q 157 (419)
++|||++|||.+|||||+|++++|++||++ ++++|+|||+||+|++. +++++++++++++++|+|+||||+|+.||+|
T Consensus 1 ~i~tG~~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~q 80 (280)
T cd00806 1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQ 80 (280)
T ss_pred CEEEeeCCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEc
Confidence 589999999999999999999999999995 89999999999999977 9999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchHHHHHHHHHHH
Q 014776 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (419)
Q Consensus 158 S~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~eLaRdia 237 (419)
|++++|.++.|+|+|.+++++|+|+++||++.+. .+++++|+|+||+||||||++|++|+||||.||+||+||+||+|
T Consensus 81 S~~~~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~--~~~~~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia 158 (280)
T cd00806 81 SDVPEHYELAWLLSCVVTFGELERMTGFKDKSAQ--GESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIA 158 (280)
T ss_pred CCcHHHHHHHHHHhCcCCHHHHHhccchhhhhcc--CCCCcchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHH
Confidence 9999999999999999999999999999998663 36889999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhccCCCCC
Q 014776 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317 (419)
Q Consensus 238 ~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~ 317 (419)
+|||++|| .+|++|+++++. +++||||++|++|||||++ +|+|+|+|+|++|++|||+|+||+..
T Consensus 159 ~r~n~~~~------------~~~~~P~~l~~~-~~~i~~l~g~~~KMSKS~~--~~~I~L~d~~~~i~~KI~~a~td~~~ 223 (280)
T cd00806 159 RRFNKLYG------------EIFPKPAALLSK-GAFLPGLQGPSKKMSKSDP--NNAIFLTDSPKEIKKKIMKAATDGGR 223 (280)
T ss_pred HHhccccc------------cccCCCeeeccC-CCccccCCCCCCcccCCCC--CCeEEeeCCHHHHHHHHHhccCCCCC
Confidence 99999998 679999999985 5799999877789999996 59999999999999999999999988
Q ss_pred CcccCCCCCCccchHHHHHHhcCCCCHHHHH--HHHh--cCCcchHHHHHHHHHHHh
Q 014776 318 GLEFDNLERPECNNLLSIYQLISGKTKGEVA--EECQ--NMNWGTFKPLLTDALIEH 370 (419)
Q Consensus 318 ~i~~~~~~rp~v~~ll~i~~~~~~~~~eel~--~~~~--~l~~~dlK~~La~~I~~~ 370 (419)
++.++.+++|+++|+++||.++++.+.++++ ++|. ++++++||+.||+.|+++
T Consensus 224 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~K~~lae~i~~~ 280 (280)
T cd00806 224 TEHRRDGGGPGVSNLVEIYSAFFNDDDEELEEIDEYRSGGLGYGECKKLLAEAIQEF 280 (280)
T ss_pred ceecCCCCCCCcChHHHHHHHHhCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Confidence 7888899999999999999999998888888 6775 789999999999999864
No 11
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.7e-73 Score=578.01 Aligned_cols=286 Identities=27% Similarity=0.354 Sum_probs=263.7
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecC-CCCHHHHHHHHHHHHHHHHHcCcCCCceEE
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GlDp~k~~i 154 (419)
+++++|||++|||.+|||||++ +.+|++||+. ++++|+||||||+++ ..+++++++++++++++|+|+||||+|+.|
T Consensus 65 ~~~~iytG~~PSG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i 143 (368)
T PRK12285 65 KPFAVYTGFMPSGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEI 143 (368)
T ss_pred CCeEEEEccCCCCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 4789999999999999999986 6799999996 799999999999998 579999999999999999999999999999
Q ss_pred EEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhh------cccceecccCchHH
Q 014776 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL------YQSDFVPVGEDQKQ 228 (419)
Q Consensus 155 f~qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~------~~adivpvG~DQ~~ 228 (419)
|+||++++|.++.|.++|.+++++++|+.+|+ +++++|+++||+|||||||+ +++|+||||+||+|
T Consensus 144 ~~qS~~~~~~~l~~~l~~~~t~~~l~r~~~f~--------~~~~~g~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~ 215 (368)
T PRK12285 144 YFQSENIKVYDLAFELAKKVNFSELKAIYGFT--------GETNIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQDP 215 (368)
T ss_pred EECCchHHHHHHHHHHHhhCcHHHHHHhhCCC--------CCCchhhhhhhHHHHHHHHhhcccccCCceEEEeccchHH
Confidence 99999999999999999999999999998886 46899999999999999999 78899999999999
Q ss_pred HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHh
Q 014776 229 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 308 (419)
Q Consensus 229 h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI 308 (419)
|+|||||+|+|||+.|| |++|.+++++ ++||| +| +|||||+| +|+|+|+|+|++|++||
T Consensus 216 h~~ltRdiA~r~n~~~g--------------f~~P~~l~~~---~lpgL-~G-~KMSkS~~--~s~I~L~D~p~~I~kKI 274 (368)
T PRK12285 216 HIRLTRDIAERLHGGYG--------------FIKPSSTYHK---FMPGL-TG-GKMSSSKP--ESAIYLTDDPETVKKKI 274 (368)
T ss_pred HHHHHHHHHHHHhhhcC--------------CCCchhHhhh---cccCC-CC-CcCCCCCC--CCeeeccCCHHHHHHHH
Confidence 99999999999999998 8999999875 99999 45 69999997 59999999999999999
Q ss_pred hhccCCCCCCcccCC--CCCCccchHHHHHHhcC---CCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhhHHHHHHHHH
Q 014776 309 KRCKTDSSAGLEFDN--LERPECNNLLSIYQLIS---GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEI 381 (419)
Q Consensus 309 ~kA~Td~~~~i~~~~--~~rp~v~~ll~i~~~~~---~~~~eel~~~~~--~l~~~dlK~~La~~I~~~L~pirer~~~~ 381 (419)
++|+||+..+++++. +++|++|++++|+.++. ++++++++++|+ +++|++||+.|++.|+++|+|+|+||+++
T Consensus 275 ~kA~Td~~~t~~~~~~~~g~p~~~~v~~~l~~~~~~~d~~~eei~~~y~~g~~~~g~~K~~lae~i~~~l~~~~er~~~~ 354 (368)
T PRK12285 275 MKALTGGRATLEEQRKLGGEPDECVVYELLLYHLEEDDKELKEIYEECRSGELLCGECKKEAAEKIAEFLKEHQEKREEA 354 (368)
T ss_pred HhCcCCCCcccccccccCCCCCcchHHHHHHHHhcCCCccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998876643 58899999999999875 578999999997 48999999999999999999999999988
Q ss_pred hcChHHHHHHHHHH
Q 014776 382 MSDSAYLDKVLADG 395 (419)
Q Consensus 382 ~~d~~~l~~iL~~G 395 (419)
.+ .|++.+..+
T Consensus 355 ~~---~~~~~~~~~ 365 (368)
T PRK12285 355 RE---ILEKYLYDG 365 (368)
T ss_pred HH---HHHHhhccc
Confidence 64 566665443
No 12
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=3.1e-69 Score=541.28 Aligned_cols=268 Identities=26% Similarity=0.373 Sum_probs=240.9
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhh-cccEEEEEeCcceecCC-CCHHHHHHHHHHHHHHHHHcCcCCCceEE
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKASV 154 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~-~~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~a~~lA~GlDp~k~~i 154 (419)
+++++|||++|||.+||||++ ++.+|++||+ .++++|+||||||++++ .+++++++++++++++|+|+|+||+|++|
T Consensus 29 ~~~~v~~G~~PTG~lHLG~~~-~~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~i 107 (329)
T PRK08560 29 EEPKAYIGFEPSGKIHLGHLL-TMNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTEF 107 (329)
T ss_pred CCCEEEEccCCCCcchhhhhH-HHHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheEE
Confidence 578999999999999999986 4778999999 58999999999999985 69999999999999999999999999999
Q ss_pred EEcCCcchhhH---HHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchHHHHH
Q 014776 155 FVQSHVRAHVE---LMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 231 (419)
Q Consensus 155 f~qS~v~~~~e---l~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~e 231 (419)
|+||+|++|.+ +.|.|+|.++++++.|+.+++.+ . . ++.++|+|+||+||||||++|++|+||||.||+||++
T Consensus 108 ~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~--~-~-~~~~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~~ 183 (329)
T PRK08560 108 VLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGR--R-M-EEPDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIHM 183 (329)
T ss_pred EecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcc--c-C-CCCCHHHHHHHHHHHHHHHHhCCCEEEechhHHHHHH
Confidence 99999998875 44449999999999999988753 1 1 3459999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhc
Q 014776 232 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 311 (419)
Q Consensus 232 LaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA 311 (419)
||||+|++|| +.+|.+++.+ +||||+++++|||||+| +|+|+|+|+|++|++|||+|
T Consensus 184 l~Rdia~~~n------------------~~~p~~l~~~---~l~~L~g~~~KMSKS~p--~~~I~L~D~~~~I~~KI~kA 240 (329)
T PRK08560 184 LAREVLPKLG------------------YKKPVCIHTP---LLTGLDGGGIKMSKSKP--GSAIFVHDSPEEIRRKIKKA 240 (329)
T ss_pred HHHHhhHhcC------------------CCCceEEEcC---ccCCCCCCCCCCcCCCC--CCeecccCCHHHHHHHHHhc
Confidence 9999999998 3568888764 99999766679999997 59999999999999999999
Q ss_pred cCCCCCCcccCCCCCCccchHHHHHHhcCC--------------------CCHHHHHHHHh--cCCcchHHHHHHHHHHH
Q 014776 312 KTDSSAGLEFDNLERPECNNLLSIYQLISG--------------------KTKGEVAEECQ--NMNWGTFKPLLTDALIE 369 (419)
Q Consensus 312 ~Td~~~~i~~~~~~rp~v~~ll~i~~~~~~--------------------~~~eel~~~~~--~l~~~dlK~~La~~I~~ 369 (419)
+||+ +.|+.||+++|++++.. +++++++++|. +++|++||++|+++|++
T Consensus 241 ~t~~---------~~~~~n~v~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~~eel~~~y~~g~l~~~~lK~~la~~i~~ 311 (329)
T PRK08560 241 YCPP---------GEVEGNPVLEIAKYHIFPRYDPFVIERPEKYGGDLEYESYEELERDYAEGKLHPMDLKNAVAEYLIE 311 (329)
T ss_pred cCCC---------CCcCCCcHHHHHHHHhhccccceEEechhhcCCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9975 45788999999998742 57999999997 47899999999999999
Q ss_pred hhhHHHHHHHHH
Q 014776 370 HLHPIQVRYEEI 381 (419)
Q Consensus 370 ~L~pirer~~~~ 381 (419)
+|+|||++|++.
T Consensus 312 ~l~pir~~~~~~ 323 (329)
T PRK08560 312 ILEPVREYLEEG 323 (329)
T ss_pred HHHHHHHHHhCC
Confidence 999999999853
No 13
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.2e-69 Score=548.05 Aligned_cols=271 Identities=23% Similarity=0.337 Sum_probs=238.7
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCC---CCHHHHHHHHHHHHHHHHHcCcCCCce
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~a~~lA~GlDp~k~ 152 (419)
+++++|+||+|||.+||||.+..+.+|++||++ ++++|+||||||++++ ++++++++++++++++|+|+|+||+|+
T Consensus 65 ~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~~~A~GlDp~k~ 144 (383)
T PTZ00126 65 ERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMDNV 144 (383)
T ss_pred CCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHHHHHhCCCccce
Confidence 568999999999999999933222389999996 8999999999999984 699999999999999999999999999
Q ss_pred EEEEcCC-cchhhHHHHHHhcc----ccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchH
Q 014776 153 SVFVQSH-VRAHVELMWLLSSA----TPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (419)
Q Consensus 153 ~if~qS~-v~~~~el~w~L~~~----~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~ 227 (419)
+||+||+ +++|++++|++.+. ++++++.|+.+++++.. .++.++|+|+||+||||||++|++|+||||.||+
T Consensus 145 ~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~---~~~~~~g~l~YP~LQaaDil~l~adivpvG~DQ~ 221 (383)
T PTZ00126 145 RFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSE---GDEQPCAQILYPCMQCADIFYLKADICQLGMDQR 221 (383)
T ss_pred EEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhcccc---CCCCCchhhhhhHHHhhhhhccCCCEEEeCccHH
Confidence 9999998 67999999998775 59999999999986532 2567999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHH
Q 014776 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (419)
Q Consensus 228 ~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~K 307 (419)
||++||||+|++||+. ++|..++. ++||||+||++|||||+| +++|+|+|+|++|++|
T Consensus 222 ~~~~LaRdia~~~~~~-----------------~~~~~~~~---~~lpgL~dg~~KMSKS~~--ns~I~L~Dspe~I~kK 279 (383)
T PTZ00126 222 KVNMLAREYCDKKKIK-----------------KKPIILSH---HMLPGLLEGQEKMSKSDP--NSAIFMEDSEEDVNRK 279 (383)
T ss_pred HHHHHHHHHHHHhCCC-----------------CCceeecc---cccccCCCCCCCCCcCCC--CCeecCCCCHHHHHHH
Confidence 9999999999999852 34555543 599999888899999997 4899999999999999
Q ss_pred hhhccCCCCCCcccCCCCCCccchHHHHHHhcC--------------------CCCHHHHHHHHh--cCCcchHHHHHHH
Q 014776 308 IKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS--------------------GKTKGEVAEECQ--NMNWGTFKPLLTD 365 (419)
Q Consensus 308 I~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~~--------------------~~~~eel~~~~~--~l~~~dlK~~La~ 365 (419)
||+|+||+ ++++.||+++|++++. ++++++++++|. .++|++||++||+
T Consensus 280 I~kA~t~p---------~~~~~npv~~~~~~~~~~~~~~~~I~r~~k~gg~~~~~~~eel~~~y~~g~l~p~dlK~~lae 350 (383)
T PTZ00126 280 IKKAYCPP---------GVIEGNPILAYFKSIVFPAFNSFTVLRKEKNGGDVTYTTYEELEKDYLSGALHPGDLKPALAK 350 (383)
T ss_pred HHhCcCCC---------CCCCCCcchhhhhhcccccccceeEeccccccCccCcCCHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 99999974 4567789999998642 358999999997 5899999999999
Q ss_pred HHHHhhhHHHHHHHHH
Q 014776 366 ALIEHLHPIQVRYEEI 381 (419)
Q Consensus 366 ~I~~~L~pirer~~~~ 381 (419)
+|+++|+|||++|++.
T Consensus 351 ~i~~~L~PIRe~~~~~ 366 (383)
T PTZ00126 351 YLNLMLQPVRDHFQNN 366 (383)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 9999999999999743
No 14
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.8e-65 Score=547.09 Aligned_cols=280 Identities=23% Similarity=0.346 Sum_probs=246.2
Q ss_pred CceEEEecCCCCcchhhh-HHHHHHHHHHHhhcccEEEEEeCcceecCC---CCHHHHHHHHHHHHHHHHHcCcCCCceE
Q 014776 78 KKRIVSGVQPTGSIHLGN-YLGAIKNWIALQNSYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKAS 153 (419)
Q Consensus 78 ~~~i~tGi~PTG~lHLGn-ylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~a~~lA~GlDp~k~~ 153 (419)
++++||||+|||++|||| ++++++.|..+|..++++||||||||+|++ .++++++.++++++++|+|+|+||+|++
T Consensus 32 ~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK~~ 111 (682)
T PTZ00348 32 LIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKVL 111 (682)
T ss_pred CCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 579999999999999999 567777787778779999999999999974 3899999999999999999999999999
Q ss_pred EEEcCC-cchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC--CCCccchhhhhhHHHHHhhhhcccceecccCchHHHH
Q 014776 154 VFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG--GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230 (419)
Q Consensus 154 if~qS~-v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~--~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~ 230 (419)
||+||+ +++|++++|++ .++++++.++.++|++.+..+ .+++++|+++||+||||||++|++|+||||.||+||+
T Consensus 112 ~~~qSd~i~e~~el~w~l--v~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPvLQAADIl~l~adivpvG~DQ~qh~ 189 (682)
T PTZ00348 112 FLWSSEEITNHANTYWRT--VLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCADIFFLKADICQLGLDQRKVN 189 (682)
T ss_pred EEECcHhhhhhhHHHHHH--HHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhhHHHhhcccccCCCEEEeCccHHHHH
Confidence 999998 88999999999 578999999999998643222 2358999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhh
Q 014776 231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310 (419)
Q Consensus 231 eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~k 310 (419)
||||++|++||+. .+|..+.. ++||||+||++|||||+| +|+|+|+|+|++|++||++
T Consensus 190 eLaRdia~~~g~~-----------------~kpvil~~---~~LpGL~gg~~KMSKS~p--~naI~L~Dspe~I~kKI~k 247 (682)
T PTZ00348 190 MLAREYCDLIGRK-----------------LKPVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMEDTEEDVARKIRQ 247 (682)
T ss_pred HHHHHHHHHhCCC-----------------CCceeccc---ccCcCCCCCCCcCCCCCC--CCeecccCCHHHHHHHHHh
Confidence 9999999998742 23444443 599999878789999997 4999999999999999999
Q ss_pred ccCCCCC--CcccCCCCCC----ccchHHHHHHhcC--------------CCCHHHHHHHHh--cCCcchHHHHHHHHHH
Q 014776 311 CKTDSSA--GLEFDNLERP----ECNNLLSIYQLIS--------------GKTKGEVAEECQ--NMNWGTFKPLLTDALI 368 (419)
Q Consensus 311 A~Td~~~--~i~~~~~~rp----~v~~ll~i~~~~~--------------~~~~eel~~~~~--~l~~~dlK~~La~~I~ 368 (419)
|+||+.+ .++..++++| +.||+|+||+++. ++++++++++|. +++|+|||++|+++|+
T Consensus 248 A~td~~~~~~~~~~d~g~p~~~~e~npvl~i~~~~if~~~g~~~~i~~~~~~~~eele~~y~~g~l~~~dlK~~lae~l~ 327 (682)
T PTZ00348 248 AYCPRVKQSASEITDDGAPVATDDRNPVLDYFQCVVYARPGAVATIDGTTYATYEDLEQAFVSDEVSEEALKSCLIDEVN 327 (682)
T ss_pred CCCCCCcCcccccCCCCCccccCCCCcHHHHHHHHhccccchhcccCCcccCcHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999863 4566777888 8899999999873 268999999996 5899999999999999
Q ss_pred HhhhHHHHHHHHH
Q 014776 369 EHLHPIQVRYEEI 381 (419)
Q Consensus 369 ~~L~pirer~~~~ 381 (419)
++|+|||++|++.
T Consensus 328 ~~L~PIRe~~~~~ 340 (682)
T PTZ00348 328 ALLEPVRQHFASN 340 (682)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999854
No 15
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=2e-60 Score=483.76 Aligned_cols=276 Identities=19% Similarity=0.247 Sum_probs=238.9
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc--ccEEEEEeCcceecCC-CCHHHHHHHHHHHHHHHHHcCcCCCce
Q 014776 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKA 152 (419)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~ik~~~~lQ~~--~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~a~~lA~GlDp~k~ 152 (419)
+++++|+|++|||. |||||+++++ ....||++ +.++|+|||+|+++.+ .+++++++++++++++|+|+||||+|+
T Consensus 72 ~~~~vYtG~~PSg~~lHlGHlv~~~-~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt 150 (383)
T PLN02486 72 EKFYLYTGRGPSSEALHLGHLIPFM-FTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERT 150 (383)
T ss_pred CCeEEEeCCCCCCccccHHHHHHHH-HHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcce
Confidence 36899999999995 9999999977 33359987 5789999999999984 599999999999999999999999999
Q ss_pred EEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCccchhhhhhHHHHHhhh------hccc-----cee
Q 014776 153 SVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL------LYQS-----DFV 220 (419)
Q Consensus 153 ~if~qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQaADil------~~~a-----div 220 (419)
.||.|++| +.+++|.... ++.|+.+++++.+.+| .++.++|+++||+||||||| ++.. |+|
T Consensus 151 ~I~s~~~~--~~~~~~~~~~-----~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lV 223 (383)
T PLN02486 151 FIFSDFDY--VGGAFYKNMV-----KIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLI 223 (383)
T ss_pred EEEeccHH--HhHhHHHHHH-----HHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCccee
Confidence 99977766 5556555432 5678888888877766 45779999999999999998 4554 899
Q ss_pred cccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCC
Q 014776 221 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 300 (419)
Q Consensus 221 pvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Ds 300 (419)
|||.||+||++||||+|+||| +.+|..+++ .++|+|+++.+|||||+| +|+|+|+|+
T Consensus 224 PvG~DQd~~~~ltRdia~r~~------------------~~kp~~~~~---~~lp~L~g~~~KMSkS~~--nsaI~L~D~ 280 (383)
T PLN02486 224 PCAIDQDPYFRMTRDVAPRLG------------------YYKPALIES---RFFPALQGESGKMSASDP--NSAIYVTDT 280 (383)
T ss_pred ecccchHHHHHHHHHHHHHhC------------------CCCcceecc---ccccCCCCCCCcCcCcCC--CCeeeccCC
Confidence 999999999999999999998 346877765 499999877789999997 489999999
Q ss_pred HHHHHHHhhh-ccCCCCCCcccC--CCCCCccchHHHHHHhcC--CCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhhH
Q 014776 301 KDVIANKIKR-CKTDSSAGLEFD--NLERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHP 373 (419)
Q Consensus 301 pe~I~~KI~k-A~Td~~~~i~~~--~~~rp~v~~ll~i~~~~~--~~~~eel~~~~~--~l~~~dlK~~La~~I~~~L~p 373 (419)
|++|++||++ |+||+..+++.. .+++|+++++|+||.+|. +++++++.++|+ +++|++||+.|++.|+++|+|
T Consensus 281 p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v~~~~~~l~~f~~dd~~~eei~~~y~~G~l~~ge~K~~lae~i~~~l~~ 360 (383)
T PLN02486 281 PKEIKNKINKYAFSGGQDTVEEHRELGANLEVDIPWKYLNFFLEDDAELERIKKEYGSGRMLTGEVKKRLIEVLTEIVER 360 (383)
T ss_pred HHHHHHHHhcCCCCCCCCcccccccCCCCCccchHHHHHHHHcCCchHHHHHHHHhccCCcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999877653 468999999999999995 467999999996 589999999999999999999
Q ss_pred HHHHHHHHhc
Q 014776 374 IQVRYEEIMS 383 (419)
Q Consensus 374 irer~~~~~~ 383 (419)
+|+|++++..
T Consensus 361 ~qerr~~~~~ 370 (383)
T PLN02486 361 HQRARAAVTD 370 (383)
T ss_pred HHHHHHHHHH
Confidence 9999998863
No 16
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=2.1e-60 Score=469.66 Aligned_cols=275 Identities=35% Similarity=0.531 Sum_probs=244.0
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCC---CHHHHHHHHHHHHHH--HHHcCcCCC
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY---DTQQLSKATRETAAI--YLACGIDNS 150 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~---~~~~i~~~~~~~~a~--~lA~GlDp~ 150 (419)
+++++|+||+|||.+||||+ +.+.+|++||+. ++++|+||||||++++. +++.++.++.+++.. |+|+|+||+
T Consensus 4 ~~~~~y~G~~PTg~lHlG~l-~~~~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~ 82 (292)
T PF00579_consen 4 KPFRVYTGIDPTGDLHLGHL-VPIMKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPE 82 (292)
T ss_dssp SSEEEEEEEESSSS-BHHHH-HHHHHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTT
T ss_pred CCcEEEEeECCCCcccchHH-HHHHHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 57899999999999999965 557899999976 89999999999999854 599999999999999 999999999
Q ss_pred ceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCccchhhhhhHHHHHhhhhcccceecccCchHHH
Q 014776 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (419)
Q Consensus 151 k~~if~qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h 229 (419)
++.||+||+|+++.++.|.+.+..+..+++|+.+++++..+.+ ++++++|+|+||+||||||+++++|+||||.||++|
T Consensus 83 k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~~~ 162 (292)
T PF00579_consen 83 KTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKADLVPGGIDQRGH 162 (292)
T ss_dssp TEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHSEEEEEGGGHHH
T ss_pred ceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceeeeccccccccchHHHH
Confidence 9999999999999999999999999999999999998666554 358899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhh
Q 014776 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (419)
Q Consensus 230 ~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~ 309 (419)
++++||+|+|||++. .|++|..++++ ++|+| +|.+|||||+++ ++|+|+|++++|++||+
T Consensus 163 ~~l~rd~a~k~~~~~--------------~~~~p~~l~~~---~l~~l-~G~~KMSKS~~n--s~I~L~d~~~~i~~Ki~ 222 (292)
T PF00579_consen 163 IELARDLARKFNYKE--------------IFPKPAGLTSP---LLPGL-DGQKKMSKSDPN--SAIFLDDSPEEIRKKIK 222 (292)
T ss_dssp HHHHHHHHHHHTHHS--------------TSSS-EEEEET---CBBST-TSSSBTTTTTTG--GS-BTTTTHHHHHHHHH
T ss_pred HHHHHHHHhhhcccc--------------cccCchheeec---ccccc-CCccccCccCCc--cEEEEeccchhHHHHHH
Confidence 999999999999762 38899999986 99999 676799999974 79999999999999999
Q ss_pred hccCCCCCCcccCCCCCCccch-HHHHHHhcCC----CCHHHHHHHHh--cCCcchHHHHHHHHHHHhhh
Q 014776 310 RCKTDSSAGLEFDNLERPECNN-LLSIYQLISG----KTKGEVAEECQ--NMNWGTFKPLLTDALIEHLH 372 (419)
Q Consensus 310 kA~Td~~~~i~~~~~~rp~v~~-ll~i~~~~~~----~~~eel~~~~~--~l~~~dlK~~La~~I~~~L~ 372 (419)
+|+|++...+......++.+++ +++++..+.+ .+++++.++|. .+|++++|++++++++++|+
T Consensus 223 ~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~K~~~~e~~~~~le 292 (292)
T PF00579_consen 223 KAFCDPDRENPRLLKGRPFISPFLIERLEAFHGNDDYRSLEELLADYVSGELHPGDLKKALAEALNEFLE 292 (292)
T ss_dssp HSHTSTTSHHHHHHHHHHTHHHHHHHHHHHHHHHHHESHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCcccccccccCCCCCHHHHHHHHHhcCCcchHHHHHHHHHHccCCcChHHHHHHHHHHHHHhhC
Confidence 9999998755555556788888 8888887643 35799999997 47999999999999999885
No 17
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=1.8e-59 Score=458.73 Aligned_cols=249 Identities=23% Similarity=0.269 Sum_probs=222.4
Q ss_pred ceEEEecCCCC-cchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecC-C---------CCHHHHHHHHHHHHHHHHHcC
Q 014776 79 KRIVSGVQPTG-SIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLACG 146 (419)
Q Consensus 79 ~~i~tGi~PTG-~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~~~~a~~lA~G 146 (419)
.++|+||+||| .+|||||+++ .+|++||++ ++++|+|||+||+++ + .+++++++++++++++|+|+|
T Consensus 1 ~~iy~G~~PTg~~lHLG~~~~~-~~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g 79 (269)
T cd00805 1 LKVYIGFDPTAPSLHLGHLVPL-MKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAIL 79 (269)
T ss_pred CeEEEeeCCCCCcccHHHHHHH-HHHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999 7999999986 589999995 799999999999997 5 689999999999999999999
Q ss_pred cC--CCceEEEEcCCcchhhHHHHH----HhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhccccee
Q 014776 147 ID--NSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 220 (419)
Q Consensus 147 lD--p~k~~if~qS~v~~~~el~w~----L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adiv 220 (419)
+| |+|++||+||+|++| ++|+ +++.+++++|.|+.+|+++... .+++++|+|+||+||||||+++++|+|
T Consensus 80 ~~~~p~k~~i~~~s~~~~~--l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~--~~~~~~~~~~YP~lQaaDi~~l~~~l~ 155 (269)
T cd00805 80 DFIPPEKAKFVNNSDWLLS--LYTLDFLRLGKHFTVNRMLRRDAVKVRLEE--EEGISFSEFIYPLLQAYDFVYLDVDLQ 155 (269)
T ss_pred ccCCCcceEEEEchHhhcc--CCHHHHHHHHhhCcHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHhhHHHHhCCee
Confidence 97 999999999999988 7787 9999999999999999987542 267899999999999999999999999
Q ss_pred cccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCc-eecCC
Q 014776 221 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR-INLLD 299 (419)
Q Consensus 221 pvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~-I~L~D 299 (419)
|||.||++|++++||+|+|||+ ..|..+.. ++||+| +| .|||||+++ +. |++.|
T Consensus 156 ~~G~DQ~~~i~~~rd~a~r~~~------------------~~~~~l~~---~ll~~l-~G-~KMSKS~~~--~~~i~l~d 210 (269)
T cd00805 156 LGGSDQRGNITLGRDLIRKLGY------------------KKVVGLTT---PLLTGL-DG-GKMSKSEGN--AIWDPVLD 210 (269)
T ss_pred EecHHHHHHHHHHHHHHHHhCC------------------CCcEEEee---ccccCC-CC-CcccCCCCC--cccccCCC
Confidence 9999999999999999999973 33555554 499999 56 599999874 33 79999
Q ss_pred CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhc-CCcchHHHHHHHHHHHh
Q 014776 300 PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN-MNWGTFKPLLTDALIEH 370 (419)
Q Consensus 300 spe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~~~~~~eel~~~~~~-l~~~dlK~~La~~I~~~ 370 (419)
+|++|++||++|+|| ++.+++.++.++++++++|++++|.. -.++++|+.||++|+++
T Consensus 211 sp~~i~~Ki~~a~~~-------------~v~~~l~~~~~~~~~~~eel~~~~~~~~~~~~~K~~la~~i~~l 269 (269)
T cd00805 211 SPYDVYQKIRNAFDP-------------DVLEFLKLFTFLDYEEIEELEEEHAEGPLPRDAKKALAEELTKL 269 (269)
T ss_pred CHHHHHHHHHcCCcH-------------HHHHHHHHHHcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 999999999999986 46789999998889999999999973 23999999999999863
No 18
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=9.7e-59 Score=454.36 Aligned_cols=248 Identities=26% Similarity=0.401 Sum_probs=222.0
Q ss_pred eEEEecCCCC-cchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCC----------CHHHHHHHHHHHHHHHHHcCc
Q 014776 80 RIVSGVQPTG-SIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY----------DTQQLSKATRETAAIYLACGI 147 (419)
Q Consensus 80 ~i~tGi~PTG-~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~----------~~~~i~~~~~~~~a~~lA~Gl 147 (419)
.+|+||+||| .+|||||+| +.+|++||+. ++++++|||+||++++. +++++++|+.+++++|+|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4899999999 699999999 7899999995 89999999999999843 799999999999999999999
Q ss_pred C--CCceEEEEcCCcc---hhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhccc----c
Q 014776 148 D--NSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS----D 218 (419)
Q Consensus 148 D--p~k~~if~qS~v~---~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~a----d 218 (419)
| |+|++||.||+|+ +|.++.|.+++.+++++|.|+.+||++.. +++++|+|+||+||||||+++++ |
T Consensus 80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~~----~~~~~~~~~Yp~lQaaD~l~l~~~~~~~ 155 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRSE----EGISATEFTYPPLQAADFLLLNTTEGCD 155 (273)
T ss_pred cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHhc----CCCCchhhhhHHHHHHHHHHHhcccCCc
Confidence 9 9999999999999 89999999999999999999999998652 57899999999999999999988 9
Q ss_pred eecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecC
Q 014776 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (419)
Q Consensus 219 ivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~ 298 (419)
+||||.||+||++++||+|+|||. |+.|..++.+ +|||| +| .|||||+++.-..|+++
T Consensus 156 ~vp~G~DQ~~~i~l~rdla~r~n~-----------------~~~p~~l~~p---~l~~l-~G-~KMSKS~~~~i~l~~~~ 213 (273)
T cd00395 156 IQPGGSDQWGNITLGRELARRFNG-----------------FTIAEGLTIP---LVTKL-DG-PKFGKSESGPKWLDTEK 213 (273)
T ss_pred EEEecHHHHHHHHHHHHHHHHhCC-----------------CCCCeEEeec---cccCC-CC-CcCCCCCCCCccccccC
Confidence 999999999999999999999982 6779888875 99999 56 39999986422235579
Q ss_pred CCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHH----HHhcCCcchHHHHHHHHHHHh
Q 014776 299 DPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAE----ECQNMNWGTFKPLLTDALIEH 370 (419)
Q Consensus 299 Dspe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~~~~~~eel~~----~~~~l~~~dlK~~La~~I~~~ 370 (419)
|+|++|++||++|+ .++++.|+++|++.+.+|+++ .|++.+++++|+.||+.|+++
T Consensus 214 dsp~~i~~ki~~a~----------------d~~v~~~~~~~t~~~~~ei~~i~~~~~~~~~~~~~K~~La~~i~~~ 273 (273)
T cd00395 214 TSPYEFYQFWINAV----------------DSDVINILKYFTFLSKEEIERLEQEQYEAPGYRVAQKTLAEEVTKT 273 (273)
T ss_pred CCHHHHHHHHHccc----------------HhHHHHHHHHHcCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 99999999999998 268899999998888888777 555667899999999999863
No 19
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.5e-51 Score=423.53 Aligned_cols=257 Identities=20% Similarity=0.233 Sum_probs=222.8
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecC-CC---------CHHHHHHHHHHHHHHHHH
Q 014776 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (419)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~~a~~lA 144 (419)
.++++|+||+|||. +|||||++ +.+|++||+. ++++++||||||+++ |. +.+.+++|+.++.. .+|
T Consensus 32 ~~~~vy~G~dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i~~-ql~ 109 (408)
T PRK05912 32 EPLRIYLGFDPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETIKE-QLF 109 (408)
T ss_pred CCCEEEEeecCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHHHH-HHH
Confidence 46899999999995 99999997 6799999997 799999999999996 42 56889999987654 459
Q ss_pred cCcCCCc--eEEEEcCCcchhhHHHHHHh---ccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhc----
Q 014776 145 CGIDNSK--ASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 215 (419)
Q Consensus 145 ~GlDp~k--~~if~qS~v~~~~el~w~L~---~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~---- 215 (419)
+|+||++ ++||+||+|+++.++.|+|. +.+++++|.+..+||++... .+++++|+|+||+|||||++++
T Consensus 110 ~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~--~~~is~~ef~Yp~LQa~D~l~l~~~~ 187 (408)
T PRK05912 110 KFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLRE--GQGISFTEFLYPLLQGYDFVALNKRY 187 (408)
T ss_pred HhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhcc--CCCCchhhhhhHHHHHhhHHHHhccC
Confidence 9999999 99999999999999999877 88899998888888865422 2578999999999999999999
Q ss_pred ccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCce
Q 014776 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (419)
Q Consensus 216 ~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 295 (419)
++|++|||.||++|++++||+|+|||.. .+..+.. ++|+++ +| +|||||. +|+|
T Consensus 188 ~~~i~~gG~DQ~~ni~~grdla~r~~~~------------------~~~~l~~---plL~~~-~G-~KMsKS~---~naI 241 (408)
T PRK05912 188 GCDLQLGGSDQWGNILSGRDLQRRYGGK------------------PQFGLTM---PLLTGL-DG-KKMGKSE---GNAV 241 (408)
T ss_pred CCCEEeccHHHHHHHHHHHHHHHHhCCC------------------CeEEEec---CCcCCC-CC-CcccCCC---CCce
Confidence 9999999999999999999999998831 1223433 488998 67 7999997 6899
Q ss_pred ecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCCcchHHHHHHHHHHHhh
Q 014776 296 NLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEHL 371 (419)
Q Consensus 296 ~L~D---spe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~~~~~~eel~~~~~-~l~~~dlK~~La~~I~~~L 371 (419)
+|+| +|+++++||+++. ++++.+++.+|.+++.+++++++++|. +.+++++|+.||+.|++++
T Consensus 242 ~L~d~~tsp~~i~qki~~~~-------------D~~v~~~l~~~t~~~~~ei~~l~~~~~~g~~~~~~Kk~LA~~v~~~l 308 (408)
T PRK05912 242 WLDEEKTSPYEMYQKWMNIS-------------DADVWRYLKLLTFLSLEEIEELEEELAEGPNPREAKKVLAEEITALV 308 (408)
T ss_pred eCCCCCCCHHHHHHHHhcCC-------------hHHHHHHHHHHhcCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 9999 9999999999962 446788888888888899999999995 5599999999999999999
Q ss_pred hHHHH
Q 014776 372 HPIQV 376 (419)
Q Consensus 372 ~pire 376 (419)
+...+
T Consensus 309 hg~~~ 313 (408)
T PRK05912 309 HGEEA 313 (408)
T ss_pred CCHHH
Confidence 98654
No 20
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.6e-48 Score=400.97 Aligned_cols=259 Identities=18% Similarity=0.206 Sum_probs=214.3
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecC-C---------CCHHHHHHHHHHHHHHHHH
Q 014776 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLA 144 (419)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~~~~a~~lA 144 (419)
+++++|+||+|||. +||||+++ +.+|.+||+. ++++++|||+||+++ | .+.+++++|+.++.+++.+
T Consensus 32 ~~~~iy~G~dPT~~sLHlGhlv~-l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i~~q~~~ 110 (410)
T PRK13354 32 KPLTLYLGFDPTAPSLHIGHLVP-LMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTYTEQIFK 110 (410)
T ss_pred CCcEEEEcccCCCCCcchhhHHH-HHHHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHHHHHHHH
Confidence 47899999999995 99999877 5689999998 789999999999996 3 2668999999999888777
Q ss_pred cCcCCCceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCccchhhhhhHHHHHhhhhc----ccce
Q 014776 145 CGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY----QSDF 219 (419)
Q Consensus 145 ~GlDp~k~~if~qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQaADil~~----~adi 219 (419)
|+||+|++||+||+|+++.++.|+|.+......++||.++++...+.. .+++++++|+||+|||+|++++ ++|+
T Consensus 111 -~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~~ef~YpllQa~D~~~l~~~~~~~i 189 (410)
T PRK13354 111 -LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSRLEREQGISFTEFFYPLLQAYDFVHLNRKEDVDL 189 (410)
T ss_pred -hcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhhhccCCCCchhhhccHHHHhhhHHHHhccCCCCE
Confidence 899999999999999988888888755555555566666655544442 3578999999999999999999 9999
Q ss_pred ecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC
Q 014776 220 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (419)
Q Consensus 220 vpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D 299 (419)
+|||.||++|++++||+|+|+|.. .|..+.. ++|+++ ||+ |||||. +|+|+|+|
T Consensus 190 q~gG~DQ~~ni~~grdl~~r~~~~------------------~~~~lt~---PlL~g~-dG~-KMsKS~---~naI~L~d 243 (410)
T PRK13354 190 QIGGTDQWGNILMGRDLQRKLEGE------------------EQFGLTM---PLLEGA-DGT-KMGKSA---GGAIWLDP 243 (410)
T ss_pred EEecHHHHHHHHHHHHHHHHhCCC------------------CceEecc---CCccCC-CCC-ccCCCC---CCceeccC
Confidence 999999999999999999999842 2444444 488998 775 999996 58999999
Q ss_pred C---HHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhc---CCCCHHHHHHHHhc-CCcchHHHHHHHHHHHhhh
Q 014776 300 P---KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI---SGKTKGEVAEECQN-MNWGTFKPLLTDALIEHLH 372 (419)
Q Consensus 300 s---pe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~---~~~~~eel~~~~~~-l~~~dlK~~La~~I~~~L~ 372 (419)
+ |+++++||+++. | +.+++|+.+| +.+++++++++|.. .+++++|+.||+.|+++++
T Consensus 244 ~~tsp~~i~qki~~~~-D---------------~~v~~~l~~~t~l~~~ei~~l~~~~~~~~~~~~~Kk~LA~~v~~~vh 307 (410)
T PRK13354 244 EKTSPYEFYQFWMNID-D---------------RDVVKYLKLFTDLSPDEIDELEAQLETEPNPRDAKKVLAEEITKFVH 307 (410)
T ss_pred CCCCHHHHHHHHHcCC-h---------------HHHHHHHHHHhCCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHC
Confidence 9 999999999862 1 3445666655 45789999999974 4699999999999999999
Q ss_pred HHHHHHH
Q 014776 373 PIQVRYE 379 (419)
Q Consensus 373 pirer~~ 379 (419)
..++..+
T Consensus 308 g~~~~~~ 314 (410)
T PRK13354 308 GEEAAEE 314 (410)
T ss_pred CHHHHHH
Confidence 9765433
No 21
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.6e-49 Score=375.11 Aligned_cols=267 Identities=24% Similarity=0.248 Sum_probs=224.2
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCC--CCHHHHHHHHHHHHHHHHH----cCcCC
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLA----CGIDN 149 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~a~~lA----~GlDp 149 (419)
+.+.+|||++|||+||+|+++++ .+..+|.++ |+|.|++|||||++++ .+++.+..++.|+-..+.| .+++.
T Consensus 33 r~l~~YwGtaptGrpHiay~vpm-~kiadflkAGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~Ik~~l~~~nv~l 111 (360)
T KOG2144|consen 33 RALKCYWGTAPTGRPHIAYFVPM-MKIADFLKAGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEIKAALGSINVPL 111 (360)
T ss_pred cCceeeecCCCCCCcceeeeeeh-hHHHHHHhcCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhhcCCcH
Confidence 46899999999999999998885 588888888 8999999999999984 4778887777765554443 36677
Q ss_pred CceEEEEcCCcc---hhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCch
Q 014776 150 SKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (419)
Q Consensus 150 ~k~~if~qS~v~---~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ 226 (419)
|+..|...|++. .++-..+.++..++-..+++... . ..++ .+++.++.++||.|||+|++++++|++++|.||
T Consensus 112 EkL~fv~gs~yq~sk~ytld~~rl~~~~~~hdak~aga-e-vvkq--ve~plls~llYP~MQalDe~~L~vD~qfgGvDQ 187 (360)
T KOG2144|consen 112 EKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDAKKAGA-E-VVKQ--VENPLLSGLLYPGMQALDEFYLEVDAQFGGVDQ 187 (360)
T ss_pred HHHhhhcccccccCccchhhHHHHHhhccHhHHHHhhh-h-HHHh--hcchhhhhhhhhhHHHhhHHHHhhhHHhcCccH
Confidence 888899999874 45666777777776655554433 2 2222 278899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHH
Q 014776 227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 306 (419)
Q Consensus 227 ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~ 306 (419)
|+.+.+||+++..++ +++|.+++++ +||||++| +|||||+|+ |.|+|.|+|++|.+
T Consensus 188 RKIf~~A~eylp~l~------------------ykKrihLmnp---MvPGL~q~-~KMSsSd~~--SkIdllD~~~~V~k 243 (360)
T KOG2144|consen 188 RKIFVLAEEYLPDLG------------------YKKRIHLMNP---MVPGLAQG-EKMSSSDPL--SKIDLLDEPADVNK 243 (360)
T ss_pred HHHHHHHHHhhhhhC------------------cccceeecCC---CCcccccc-CccccCCcc--cccccccCHHHHHH
Confidence 999999999999877 4578888875 99999654 799999985 99999999999999
Q ss_pred HhhhccCCCCCCcccCCCCCCccchHHHHHHhc-----------------------CCCCHHHHHHHHh--cCCcchHHH
Q 014776 307 KIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI-----------------------SGKTKGEVAEECQ--NMNWGTFKP 361 (419)
Q Consensus 307 KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~-----------------------~~~~~eel~~~~~--~l~~~dlK~ 361 (419)
||++||| +|+..+.|+++++.+++ +++++|+++++|. ++||+|||.
T Consensus 244 KI~kAfC---------ePg~ve~Ng~L~fvkyvvfP~~~e~~~~~i~r~ek~GG~~tf~syed~e~~y~~~~lhPgDLK~ 314 (360)
T KOG2144|consen 244 KIKKAFC---------EPGNVEGNGCLSFVKYVVFPIFEEFGVEVIDRPEKFGGNKTFKSYEDIEKDYEEGELHPGDLKK 314 (360)
T ss_pred HHHHhcC---------CCCCcCCCcHHHHHHHHHhhhHHhcCceeecchhhcCCcchhHHHHHHHHHHHhCCcChHHHHH
Confidence 9999997 45677889999999874 4568999999997 699999999
Q ss_pred HHHHHHHHhhhHHHHHHHHH
Q 014776 362 LLTDALIEHLHPIQVRYEEI 381 (419)
Q Consensus 362 ~La~~I~~~L~pirer~~~~ 381 (419)
.|+.+|+++|+|||+.+...
T Consensus 315 ~l~~alN~lL~~ir~~~~~~ 334 (360)
T KOG2144|consen 315 GLEKALNELLQPIREEFSNW 334 (360)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999988754
No 22
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=5.2e-44 Score=364.44 Aligned_cols=250 Identities=20% Similarity=0.243 Sum_probs=198.3
Q ss_pred CceEEEecCCCC-cchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecC-C---------CCHHHHHHHHHHHHHHHHHc
Q 014776 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLAC 145 (419)
Q Consensus 78 ~~~i~tGi~PTG-~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~~~~a~~lA~ 145 (419)
++++|+||+||| .+|||||++ +.+|.+||+. ++++++|||+||+++ | .+.+++++|+ ++++.++|+
T Consensus 30 ~~~vy~G~dPTg~~lHlGh~v~-l~~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~-~~i~~~la~ 107 (377)
T TIGR00234 30 KIKLYVGFDPTAPSLHLGHLVP-LLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIAR 107 (377)
T ss_pred CCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHHHHH-HHHHHHHHH
Confidence 689999999999 799999998 5689999998 799999999999998 4 2456666677 667888999
Q ss_pred CcCCCceEEEEcCCcc---hhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecc
Q 014776 146 GIDNSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV 222 (419)
Q Consensus 146 GlDp~k~~if~qS~v~---~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpv 222 (419)
|+||++++|++||+|. .+.++.|.+++.++++++.+..+|+.+. . +++++++|+||+|||+|++++++|++||
T Consensus 108 gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~--~--~~is~~ef~YpllQa~D~~~l~~di~~g 183 (377)
T TIGR00234 108 FLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRL--E--RGISLSEFIYPLLQAYDFVYLNVDLQIG 183 (377)
T ss_pred hCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHH--h--cCCCchhhhhHHHHHHHHHHHcCCeeEe
Confidence 9999999999999985 4678888899999999999999998543 2 4689999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHH
Q 014776 223 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 302 (419)
Q Consensus 223 G~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe 302 (419)
|.||++|++.+|++|+++|.+.+ |.+|.+++++.....||.++| .|||+|.+-..++||+.|+||
T Consensus 184 G~DQ~~ni~~g~dLar~~~~~~~--------------~~~t~pLl~~~dg~KmgKS~~-~~i~l~~~~~~~~i~~~d~~D 248 (377)
T TIGR00234 184 GSDQWGNIRKGRDLIRRNLPSLG--------------FGLTVPLLTPADGEKMGKSGG-GAVSLDEGKYDFYQFWINTPD 248 (377)
T ss_pred cchhHHHHHHHHHHHHHhcCCCc--------------eeeceeeecCCCCCCccCCCC-CcccCCccHhhhhhhhcCCcH
Confidence 99999999999999999985432 677777665421233333222 233333320137899999999
Q ss_pred HHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCCcchHHHHHHHHHHHhhhH
Q 014776 303 VIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHP 373 (419)
Q Consensus 303 ~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~~~~~~eel~~~~~~l~~~dlK~~La~~I~~~L~p 373 (419)
++.+||++++|+.. .++++++.+ ...-++...|+.+|..|+++++.
T Consensus 249 ~~~~Ki~k~~t~~~------------------------~~ei~~l~~-~~~~~~~~~q~~la~ei~~~vhg 294 (377)
T TIGR00234 249 EDVKKILKLFTFLG------------------------LEEIEALVE-LKGPSPREVKENLAKEITKYVHG 294 (377)
T ss_pred HHHHHHHHHcCCCc------------------------HHHHHHHHH-hcccCHHHHHHHHHHHHHHHhcC
Confidence 99999999999642 133444433 23456778888888888887764
No 23
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-44 Score=343.35 Aligned_cols=276 Identities=21% Similarity=0.307 Sum_probs=241.0
Q ss_pred CCceEEEecCCCC-cchhhhHHHHH-HHHHHHhhccc--EEEEEeCcceecCC-CCHHHHHHHHHHHHHHHHHcCcCCCc
Q 014776 77 VKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQNSYE--TLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK 151 (419)
Q Consensus 77 ~~~~i~tGi~PTG-~lHLGnylg~i-k~~~~lQ~~~~--~~i~IaDlhA~t~~-~~~~~i~~~~~~~~a~~lA~GlDp~k 151 (419)
+|+.+|||..||. .|||||.+++| .+| ||+.++ ++|.+.|.+.++.. -..++..+.+++++.+++|+|+||.|
T Consensus 84 kpFyLYTGRGpSS~smHlGHliPFiftKw--lQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~k 161 (397)
T KOG2145|consen 84 KPFYLYTGRGPSSESMHLGHLIPFIFTKW--LQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKK 161 (397)
T ss_pred CceEEEeCCCCCccccccccchhHHHHHH--HHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcc
Confidence 4789999999994 59999999988 789 999976 59999999999984 48899999999999999999999999
Q ss_pred eEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCccchhhhhhHHHHHhhhhcc-----------cce
Q 014776 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQ-----------SDF 219 (419)
Q Consensus 152 ~~if~qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQaADil~~~-----------adi 219 (419)
+.||.+.++..-. ...-++-++.++.++++....+| +++.++|.+.+|..|||..+... +|+
T Consensus 162 TfIFsn~~y~g~~------~fy~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CL 235 (397)
T KOG2145|consen 162 TFIFSNLDYMGGP------AFYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCL 235 (397)
T ss_pred eEEEechhhccCc------HHHHHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCcee
Confidence 9999999975311 01123345567777777666666 57889999999999999998741 689
Q ss_pred ecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC
Q 014776 220 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (419)
Q Consensus 220 vpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D 299 (419)
+|+.+||+++++++||+|.|++ +++|..+++. ++|.|++.+.|||.|+| +|+|||+|
T Consensus 236 iPcAiDQDPyFRmtRDvA~rlg------------------~~Kpali~st---ffpaLqG~~~KMSASdp--ns~Ifltd 292 (397)
T KOG2145|consen 236 IPCAIDQDPYFRMTRDVAPRLG------------------YPKPALIHST---FFPALQGAQTKMSASDP--NSAIFLTD 292 (397)
T ss_pred ceeeccCChHHHhhhhhhhhhC------------------CCCcceeehh---hchhhhCcccccccCCC--CceEEecC
Confidence 9999999999999999999965 7899888875 99999998999999998 59999999
Q ss_pred CHHHHHHHhhh-ccCCCCCCcccCCC--CCCccchHHHHHHhc--CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhh
Q 014776 300 PKDVIANKIKR-CKTDSSAGLEFDNL--ERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLH 372 (419)
Q Consensus 300 spe~I~~KI~k-A~Td~~~~i~~~~~--~rp~v~~ll~i~~~~--~~~~~eel~~~~~--~l~~~dlK~~La~~I~~~L~ 372 (419)
++++|++||.+ |+++++.+++++++ ++|+|+.-++|+++| ++..+|++..+|. ++..|++|+.+.+.|.+++.
T Consensus 293 t~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dVDV~~~YLsFFldDD~kLeq~r~~Y~~G~mltgEmKk~~ievLq~~V~ 372 (397)
T KOG2145|consen 293 TAKQIKNKINKYAFSGGRDTIEEHRELGGNPDVDVSFQYLSFFLDDDDKLEQIRKDYTSGEMLTGEMKKLCIEVLQEFVS 372 (397)
T ss_pred cHHHHHHHHHHhhccCCcchHHHHHHhCCCCcceehHHHHHHHhccHHHHHHHHhhccccccchhHHHHHHHHHHHHHHH
Confidence 99999999987 99999999998764 899999999999988 4457999999996 68999999999999999999
Q ss_pred HHHHHHHHHhc
Q 014776 373 PIQVRYEEIMS 383 (419)
Q Consensus 373 pirer~~~~~~ 383 (419)
.+|++++++.+
T Consensus 373 ~hQa~Rk~Vtd 383 (397)
T KOG2145|consen 373 RHQAARKEVTD 383 (397)
T ss_pred HHHHHHHhccH
Confidence 99999998864
No 24
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.4e-40 Score=357.49 Aligned_cols=225 Identities=15% Similarity=0.187 Sum_probs=196.5
Q ss_pred ccEEEEEeCcceecCC---CCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcCCcc-hhhHHHHH----HhccccHHHHhh
Q 014776 110 YETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR-AHVELMWL----LSSATPIGWLNK 181 (419)
Q Consensus 110 ~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~v~-~~~el~w~----L~~~~~v~~l~r 181 (419)
++++|++|||||++++ +++++|++.++|+.+.|+|+|+|++ ++|+|+|++. .++..||. ++..++++|+.|
T Consensus 408 ~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~~tl~r~~r 486 (682)
T PTZ00348 408 GTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARKNLLSHVEE 486 (682)
T ss_pred CeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHhccHHHHHH
Confidence 7999999999999984 6999999999999999999999999 9999999974 34567888 578889999988
Q ss_pred hhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCcccc
Q 014776 182 MIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFK 261 (419)
Q Consensus 182 ~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~ 261 (419)
+.. ++..++|+++||+||++||+++++|++.+|+|||+.++||||++++.+
T Consensus 487 ~~g---------~~~~~~s~~iYP~MQ~~Di~~L~~di~~gG~DQRki~mlAre~~~~~~-------------------- 537 (682)
T PTZ00348 487 LYG---------GELRNAGQVIAALMRVATALMLSASHVISTSLDGGINEFAREYTKGRI-------------------- 537 (682)
T ss_pred Hhc---------CCcccHHHHHHHHHHHHHHHhcCCCeeecChhHHHHHHHHHHhccccc--------------------
Confidence 762 256699999999999999999999999999999999999999988522
Q ss_pred CCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhc--
Q 014776 262 VPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI-- 339 (419)
Q Consensus 262 ~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~-- 339 (419)
.|.+++. +++|+|..|..+|++|+| +|+|+|.|++++|++||++|||.+ + .+.||+|+|.+++
T Consensus 538 ~~~~~~~---~~~p~l~~~~~~~~~~s~--~s~i~~~D~~~~i~~Ki~kA~Cpp---------~-~~~Npvl~~~~y~~~ 602 (682)
T PTZ00348 538 ECIQALE---GRVPALHRPGAAPAVLGA--DDVLYLDDNDMDIRRKIKKAYSAP---------N-EEANPVISVAQHLLA 602 (682)
T ss_pred cchhhcC---CCCccccccccccCCCCC--CCeeeecCCHHHHHHHHHhCCCCC---------C-CCCCcHHHHHHHHhc
Confidence 2333443 489999878889999876 699999999999999999999854 2 3559999999875
Q ss_pred -----------------CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhhHHHHHHH
Q 014776 340 -----------------SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYE 379 (419)
Q Consensus 340 -----------------~~~~~eel~~~~~--~l~~~dlK~~La~~I~~~L~pirer~~ 379 (419)
++.+++|++++|. .+||.|||.+++++|+++|+|+|++++
T Consensus 603 ~~~~~~i~R~e~~Gg~~~y~s~eeL~~dy~~g~lhP~DLK~av~~~l~~~l~pvr~~~~ 661 (682)
T PTZ00348 603 QQGALSIERGEANGGNVAYNTPEALVADCGSGALHPADLKAAVSQLLLDRSAAARALLS 661 (682)
T ss_pred CCCeEEEecccccCCCeeeCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3468999999997 699999999999999999999999995
No 25
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.8e-36 Score=305.10 Aligned_cols=271 Identities=20% Similarity=0.220 Sum_probs=205.2
Q ss_pred CceEEEecCCCC-cchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecC-C-CCHHHHHHHHH-----HHHHHHHHcCcC
Q 014776 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-P-YDTQQLSKATR-----ETAAIYLACGID 148 (419)
Q Consensus 78 ~~~i~tGi~PTG-~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~-~-~~~~~i~~~~~-----~~~a~~lA~GlD 148 (419)
+.++|+|++||| .+||||+++. .++.+||++ |+++++|||+||+++ | +..+..+..+. ++.....++|.+
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l-~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ 110 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPL-MKLRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKF 110 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHH-HHHHHHHHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhccc
Confidence 789999999999 6999999985 588999998 799999999999998 5 56677766664 223333567877
Q ss_pred CC-ceEEEEcCCcch---hhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccC
Q 014776 149 NS-KASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGE 224 (419)
Q Consensus 149 p~-k~~if~qS~v~~---~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~ 224 (419)
++ +++|+.+|+|.. +.+....++..++++++.+..+|+.+. ..+.++++.+|+||+|||+|+++++.|++.+|.
T Consensus 111 ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~--~~~~~is~~Ef~YpLmQayD~~~L~~dlq~GG~ 188 (401)
T COG0162 111 LDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRL--EREQGISFTEFNYPLLQAYDFVYLNKDLQLGGS 188 (401)
T ss_pred CCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHh--ccCCCCchhhhhhHHHHHHHHHHHccchhcCCh
Confidence 77 999999999953 455555577999999999998888433 222479999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCC-------CCCceec
Q 014776 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS-------DQSRINL 297 (419)
Q Consensus 225 DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~-------~~s~I~L 297 (419)
|||.++.++||+++|++ .++|.+++.| .|.++ ||+ |||||..+ +.|.|.+
T Consensus 189 DQ~~ni~~grdl~rr~g------------------~~~~~~lt~P---LL~~l-dG~-KmgKs~~~a~~~~s~~~Sp~~~ 245 (401)
T COG0162 189 DQWGNILAGRDLIRRLG------------------QKKVVGLTTP---LLTGL-DGK-KMGKSEGGAVWLDSEKTSPYDF 245 (401)
T ss_pred HHHHHHHHHHHHHHHhC------------------CCCeEEEEec---cccCC-CCC-cccccCCCceEccCCCCCcHhh
Confidence 99999999999999965 3556677775 99999 775 88887542 2457777
Q ss_pred CCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHh---------------------cCC-----CCHHHHHHHH
Q 014776 298 LDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQL---------------------ISG-----KTKGEVAEEC 351 (419)
Q Consensus 298 ~Dspe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~---------------------~~~-----~~~eel~~~~ 351 (419)
.|.+..|..|++.+||.....+ ..+++..|.+. +-+ +.+++.+..|
T Consensus 246 yq~~~~i~D~~~~~~~~~~t~l--------~~~eI~~i~~~~~~~~~~r~~k~~LA~e~~~~~hG~~~a~~a~~~~~~~F 317 (401)
T COG0162 246 YQYWMNIEDADVKRFLKLLTFL--------SLEEIEEIEKYVLKGPEPREAKKLLAKEVTKLVHGEEAAEAAEEEFEKLF 317 (401)
T ss_pred hhcHhcCcHHHHHHHHHHhCcC--------ChHHHHHHHHHhhcCCChHHHHHHHHHHhhHhhcCHHHHHHHHHHHHHHH
Confidence 7788888888888888654322 11222222221 122 2345556666
Q ss_pred h-----cCCcchHHH-----HHHHHHHHhhhHHHHHHHHHh
Q 014776 352 Q-----NMNWGTFKP-----LLTDALIEHLHPIQVRYEEIM 382 (419)
Q Consensus 352 ~-----~l~~~dlK~-----~La~~I~~~L~pirer~~~~~ 382 (419)
. ++++.|+|. .++..+...|.|.|....+..
T Consensus 318 ~~g~~~~l~~~dlk~~~~~~~~~~lv~~~L~psr~earr~i 358 (401)
T COG0162 318 SEGLPENLPPADLKQKLEDGLVDLLVDAGLAPSRSEARRLI 358 (401)
T ss_pred hcCCcccCCHHHHhhhhHHHHHHHHHHhCCcccHHHHHhhc
Confidence 4 467888888 777777778888887666644
No 26
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=4.1e-19 Score=177.28 Aligned_cols=257 Identities=18% Similarity=0.219 Sum_probs=189.2
Q ss_pred CceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecC-CC---------CHHHHHHHHHHHHHHHHH-
Q 014776 78 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA- 144 (419)
Q Consensus 78 ~~~i~tGi~PTG~-lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~~a~~lA- 144 (419)
+.+||.|++||.. +|+||.++.| .++.+|.. ++++-+|++.+|.++ |. ..+.+++|++.+...+..
T Consensus 63 p~~vYcGfDPTA~SLHvGNLl~lm-~L~hfqr~Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~i 141 (467)
T KOG2623|consen 63 PQYVYCGFDPTAESLHVGNLLALM-VLIHFQRAGHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKI 141 (467)
T ss_pred CceEEecCCCcHHhhhhcchHHHH-HHHHHHHcCCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHH
Confidence 5789999999986 9999999865 77889887 789999999999997 31 235566666655544433
Q ss_pred ---------cCcCCCceEEEEcCCcchh-hHHHHH--HhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhh
Q 014776 145 ---------CGIDNSKASVFVQSHVRAH-VELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDI 212 (419)
Q Consensus 145 ---------~GlDp~k~~if~qS~v~~~-~el~w~--L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADi 212 (419)
+|..-.+-+|+.+++|-+. .-+-++ .+.++.++.|.++-+.+. +.+..+..++.+|+|-+|||.|.
T Consensus 142 f~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~SV~~--RLes~~GlSftEFtYQ~lQAYDf 219 (467)
T KOG2623|consen 142 FENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARDSVKS--RLESPNGLSFTEFTYQLLQAYDF 219 (467)
T ss_pred HhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHHHHHH--hhcCCCCCcHHHHHHHHHHHHhH
Confidence 2444467789999998432 222222 345566666665555553 33334688999999999999999
Q ss_pred hhc----ccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCC
Q 014776 213 LLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (419)
Q Consensus 213 l~~----~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 288 (419)
+++ +.+++.+|.||+.|++..-|+.+|+-..-+ .+|.+..+|++. .+| .|..||.
T Consensus 220 y~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~~------------~vfGlT~PLlTs--------stG-~KlGKSa 278 (467)
T KOG2623|consen 220 YHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQA------------FVFGLTFPLLTS--------STG-AKLGKSA 278 (467)
T ss_pred HHHHHhcCeeEEecccccccccchHHHHHHHhccccc------------ceeeeeeeeEec--------Ccc-hhhccCC
Confidence 884 799999999999999999999998753111 334444455544 256 6999997
Q ss_pred CCCCCceecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCCcchHHHHHH
Q 014776 289 PSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLT 364 (419)
Q Consensus 289 p~~~s~I~L~D---spe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~~~~~~eel~~~~~-~l~~~dlK~~La 364 (419)
+|+|+|+. +|..+++-.-++. +.+++-+|.+++++.-+++++|.++.. +-...-..+.||
T Consensus 279 ---GnAvWLdp~~tspy~lYQfF~~~p-------------Dd~v~k~LklfTfl~l~eI~~I~~~H~k~P~~r~aQ~~LA 342 (467)
T KOG2623|consen 279 ---GNAVWLDPSKTSPYHLYQFFASLP-------------DDDVEKFLKLFTFLPLEEIKQILEEHRKEPSQRIAQKLLA 342 (467)
T ss_pred ---CceEEecCccCCcHHHHHHHHhCc-------------hhHHHHHHHHHhcCCHHHHHHHHHHHhcChhhhhHHHHHH
Confidence 68999985 6888888776665 335677888888888788888877775 455667788899
Q ss_pred HHHHHhhhHH
Q 014776 365 DALIEHLHPI 374 (419)
Q Consensus 365 ~~I~~~L~pi 374 (419)
+.|.++++..
T Consensus 343 ~eVTr~VHG~ 352 (467)
T KOG2623|consen 343 AEVTRMVHGK 352 (467)
T ss_pred HHHHHHHccc
Confidence 9999888874
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.61 E-value=7.5e-15 Score=141.59 Aligned_cols=171 Identities=20% Similarity=0.208 Sum_probs=121.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhcccEEE-EEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceE-------EEEc
Q 014776 86 QPTGSIHLGNYLGAIKNWIALQNSYETLF-FIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFVQ 157 (419)
Q Consensus 86 ~PTG~lHLGnylg~ik~~~~lQ~~~~~~i-~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~-------if~q 157 (419)
.|||.+||||+.+++.+|...+.....+| -|.| |++ .....+....+.+++..+||++++.. +|.|
T Consensus 9 sPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieD----td~--~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~Q 82 (239)
T cd00808 9 SPTGFLHIGGARTALFNYLFARKHGGKFILRIED----TDQ--ERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQ 82 (239)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECc----CCC--CCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEee
Confidence 58899999999999999988777644444 4788 443 23344566677788888999999853 8999
Q ss_pred CCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchHHHHHHHHHHH
Q 014776 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (419)
Q Consensus 158 S~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~eLaRdia 237 (419)
|+-.+ .|++...+.-.++ -|..+|++-++.|....++++|+.|.|+..+....+.+.
T Consensus 83 S~r~~---------------------~y~~~~~~L~~~g--dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~ 139 (239)
T cd00808 83 SERLE---------------------IYRKYAEKLLEKG--DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLY 139 (239)
T ss_pred eCCHH---------------------HHHHHHHHHHHcC--CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHH
Confidence 97321 1222111110011 388899999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecC----CCHHHHHHHhhh
Q 014776 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVIANKIKR 310 (419)
Q Consensus 238 ~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~----Dspe~I~~KI~k 310 (419)
+.|| ++.|...+.+ ++++. +| .||||+... .+|.-. -+|+.|..-+..
T Consensus 140 ~aLg------------------~~~p~~~h~p---ll~~~-~g-~KLSKR~~~--~~l~~lr~~G~~p~ai~~~l~~ 191 (239)
T cd00808 140 EALG------------------WEPPKFAHLP---LILNP-DG-KKLSKRKGD--TSISDYREEGYLPEALLNYLAL 191 (239)
T ss_pred HHcC------------------CCCCceEeec---cccCC-CC-CcccCCCCC--ccHHHHHHCCCCHHHHHHHHHH
Confidence 9976 4556555443 66676 55 699999742 222211 257777776664
No 28
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.44 E-value=6.8e-13 Score=117.75 Aligned_cols=63 Identities=43% Similarity=0.458 Sum_probs=54.0
Q ss_pred hhHHHHHhhhhccc---ceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCC
Q 014776 204 YPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 280 (419)
Q Consensus 204 YPvLQaADil~~~a---divpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg 280 (419)
||++|+||++.+.. |++++|.||.+|+++.++++++++. ...|..+..+ +|.+. +|
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~-----------------~~~p~~~~~~---~l~~~-~g 136 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGG-----------------PARPFGLTFG---RVMGA-DG 136 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCC-----------------CCCceEEEeC---CeECC-CC
Confidence 99999999999999 9999999999999999999999761 2457777764 88776 55
Q ss_pred CCccccCC
Q 014776 281 LSKMSKSA 288 (419)
Q Consensus 281 ~~KMSKS~ 288 (419)
+|||||.
T Consensus 137 -~KmSks~ 143 (143)
T cd00802 137 -TKMSKSK 143 (143)
T ss_pred -CcCCCCC
Confidence 6999994
No 29
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.88 E-value=3.3e-08 Score=95.07 Aligned_cols=168 Identities=20% Similarity=0.218 Sum_probs=111.7
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcCCcchhh
Q 014776 86 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHV 164 (419)
Q Consensus 86 ~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~v~~~~ 164 (419)
.|||.+||||...++-+|..-+.. +..++=|=|.-. .....+....+..++..+|++.+. .++.||+-.+.-
T Consensus 9 sPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDtD~------~R~~~~~~~~I~~dL~wlGl~wd~-~~~~QS~r~~~y 81 (230)
T cd00418 9 SPTGYLHIGHARTALFNFAFARKYGGKFILRIEDTDP------ERSRPEYVESILEDLKWLGLDWDE-GPYRQSDRFDLY 81 (230)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcCCC------CCCChHHHHHHHHHHHHcCCCCCC-CeeehhcCHHHH
Confidence 588999999999999999654443 444444444221 123335566788888899999985 378899853221
Q ss_pred HHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchHHHHHHHHHHHHHHhhhh
Q 014776 165 ELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLY 244 (419)
Q Consensus 165 el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~eLaRdia~r~n~~~ 244 (419)
.- +-++-... + |..+|=+=-+.|=...+.++|.-|.|+..+-..-+.+.+.|+
T Consensus 82 ---~~---------------~~~~L~~~---g---g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg--- 134 (230)
T cd00418 82 ---RA---------------YAEELIKK---G---GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALG--- 134 (230)
T ss_pred ---HH---------------HHHHHHHc---C---CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcC---
Confidence 11 00111111 1 556666666667777899999999999999999999999875
Q ss_pred CCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecC----CCHHHHHHHhh
Q 014776 245 GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVIANKIK 309 (419)
Q Consensus 245 g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~----Dspe~I~~KI~ 309 (419)
++.|...+.+ +|.+. +| +||||++.. .+|.-. -+|+.|..-+.
T Consensus 135 ---------------~~~P~~~H~p---ll~~~-~g-~KLSKr~~~--~~i~~~r~~G~~p~ai~~~l~ 181 (230)
T cd00418 135 ---------------WEPPRFYHFP---RLLLE-DG-TKLSKRKLN--TTLRALRRRGYLPEALRNYLA 181 (230)
T ss_pred ---------------CCCCeEEEee---eeeCC-CC-CCccCcCCC--cCHHHHHHCCCcHHHHHHHHH
Confidence 5678777764 77775 55 699999742 223211 25666666655
No 30
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.73 E-value=1.4e-06 Score=93.04 Aligned_cols=71 Identities=24% Similarity=0.392 Sum_probs=52.0
Q ss_pred hhcccceecccCchHH-HHHHHHHHHH-HHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCC
Q 014776 213 LLYQSDFVPVGEDQKQ-HLELTRELAE-RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS 290 (419)
Q Consensus 213 l~~~adivpvG~DQ~~-h~eLaRdia~-r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~ 290 (419)
..++.|+.|.|.||.. +..+++++++ .|+ .+.|..+... +|..- +| +|||||.
T Consensus 231 ~~l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg------------------~~~P~~~~y~---~v~~~-~G-~KMSKSk-- 285 (510)
T PRK00750 231 AALGVDFEPFGKDHASASYDTSKKIAREILG------------------GEPPEPFVYE---LFLDK-KG-EKISKSK-- 285 (510)
T ss_pred HHcCCCEEeeCcccCcchHHHHHHHHHHHcC------------------CCCCeeeeee---eEEeC-CC-CcccccC--
Confidence 3457999999999999 9999999999 644 3557665543 55543 35 6999997
Q ss_pred CCCceecCC-----CHHHHHHHhh
Q 014776 291 DQSRINLLD-----PKDVIANKIK 309 (419)
Q Consensus 291 ~~s~I~L~D-----spe~I~~KI~ 309 (419)
+|.|.+.| +|+.++--+.
T Consensus 286 -GN~i~~~d~l~~~~pd~lR~~l~ 308 (510)
T PRK00750 286 -GNVITIEDWLEYAPPESLRLFMF 308 (510)
T ss_pred -CCccCHHHHHHHCCHHHHHHHHH
Confidence 68888876 6666663343
No 31
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.70 E-value=4.8e-07 Score=92.26 Aligned_cols=191 Identities=23% Similarity=0.296 Sum_probs=108.6
Q ss_pred CceEEEecCCCCcchhhhHHHHHHH--HHHHhhc--ccE-EEEEeCccee------------------c--C-C----CC
Q 014776 78 KKRIVSGVQPTGSIHLGNYLGAIKN--WIALQNS--YET-LFFIVDLHAI------------------T--L-P----YD 127 (419)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~ik~--~~~lQ~~--~~~-~i~IaDlhA~------------------t--~-~----~~ 127 (419)
+..|-||+-|||.+||||+...+.. +.+.++. +++ +++.+|.|-- . . | ..
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~ 99 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCC 99 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCC
Confidence 4677789999999999998765522 4444443 565 6788999921 1 1 0 13
Q ss_pred HHHHHHHHHHHHHHHHHcCcCCCceEEEEcCCcchhhHH---HHH-HhccccHHHHhhhhhHHHHHHh------------
Q 014776 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAHVEL---MWL-LSSATPIGWLNKMIQFKEKSHK------------ 191 (419)
Q Consensus 128 ~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~v~~~~el---~w~-L~~~~~v~~l~r~~~~k~~~~~------------ 191 (419)
++-...+...+...+-.+||+.+ +|.+++...+..+ ... |...--+.++-. .+......
T Consensus 100 ~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~--~~~~~~~~~~~~P~~p~c~~ 174 (353)
T cd00674 100 ESYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILIALEKRDEIMAILN--EYRGRELQETWYPFMPYCEK 174 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHHHHHHCChHHHHHH--HhcCCccCCCceeeeeecCC
Confidence 35566667778888888999865 8888886433211 111 111111111000 00000000
Q ss_pred hC------------------------CCCcc----chhhhhhHHHHHhhhhcccceecccCchHHH---HHHHHHHHH-H
Q 014776 192 AG------------------------GENVG----VALLTYPVLMASDILLYQSDFVPVGEDQKQH---LELTRELAE-R 239 (419)
Q Consensus 192 ~~------------------------~~~~~----~g~l~YPvLQaADil~~~adivpvG~DQ~~h---~eLaRdia~-r 239 (419)
.| ...++ -|+|.+=+==++.-..++.|+.|+|.||..| +...+.+++ .
T Consensus 175 cg~~~~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~dW~~rW~~l~Vd~E~~GkDh~~~ggs~~~~~~i~~~i 254 (353)
T cd00674 175 CGKDTTTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRVDWPMRWAILGVDFEPFGKDHASAGGSYDTGKEIAREI 254 (353)
T ss_pred cCcceeEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCCCchhhhhhcCCCEEeeCccccccccHHHHHHHHHHHH
Confidence 00 00000 0122222222333344579999999999999 999999999 6
Q ss_pred HhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC
Q 014776 240 VNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (419)
Q Consensus 240 ~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D 299 (419)
|+ .+.|..+... +| .+ +|..|||||. +|.|.+.|
T Consensus 255 lg------------------~~~P~~~~ye---~V-~l-~gg~KMSKSk---GnvI~~~d 288 (353)
T cd00674 255 FG------------------GEPPVPVMYE---FI-GL-KGGGKMSSSK---GNVITPSD 288 (353)
T ss_pred hC------------------CCCCeEEEee---eE-Ee-CCCCccCCCC---CCcCCHHH
Confidence 54 3446554432 43 24 3336999996 68888765
No 32
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=98.25 E-value=3.4e-06 Score=84.19 Aligned_cols=173 Identities=20% Similarity=0.251 Sum_probs=106.3
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcCCcchh-
Q 014776 86 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH- 163 (419)
Q Consensus 86 ~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~v~~~- 163 (419)
.|||.+||||+..++.+|..-+.. ++.++=|-|. ++ .....+....+..++..+||+.|.- .++||+-.+.
T Consensus 13 SPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDt----D~--~R~~~~~~~~I~~dL~wlGl~wDe~-~~~QS~r~~~Y 85 (299)
T PRK05710 13 SPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDI----DP--PREVPGAADAILADLEWLGLHWDGP-VLYQSQRHDAY 85 (299)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcC----CC--CccchHHHHHHHHHHHHCCCCCCCC-ceEeeccHHHH
Confidence 467999999999999999766554 5666666663 22 2334456678888999999999863 6779996422
Q ss_pred ---h----HHHHHHhccccHHHHhhhhh--------HHHHHHhhCC-CC---------------------------c--c
Q 014776 164 ---V----ELMWLLSSATPIGWLNKMIQ--------FKEKSHKAGG-EN---------------------------V--G 198 (419)
Q Consensus 164 ---~----el~w~L~~~~~v~~l~r~~~--------~k~~~~~~~~-~~---------------------------~--~ 198 (419)
. +.-+.+.|.++-.++++..+ |.-.-+.... +. . .
T Consensus 86 ~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~iRlk~~~~~~~~~D~~~G~~~~~~~~~ 165 (299)
T PRK05710 86 RAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAWRLRVPDAVIAFDDRLQGRQHQDLALA 165 (299)
T ss_pred HHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceEEEEcCCCceEEEEecceeEeeCCCCC
Confidence 1 22233669999888865431 0000000000 00 0 0
Q ss_pred c---------hhhhhhHHHHHhhhhcccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCC
Q 014776 199 V---------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPP 269 (419)
Q Consensus 199 ~---------g~l~YPvLQaADil~~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~ 269 (419)
+ |..+|=+==+.|=...+.++|.=|.|....-..-.-|.+.|+ ++.|+..+.+
T Consensus 166 ~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg------------------~~~P~y~H~p 227 (299)
T PRK05710 166 VGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLG------------------LPTPRYLHLP 227 (299)
T ss_pred CCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcC------------------CCCCeEEEee
Confidence 1 112222222222233468899999998776655556666544 6778877765
Q ss_pred CCcccccCCCCCCccccCC
Q 014776 270 AGARVMSLTDGLSKMSKSA 288 (419)
Q Consensus 270 ~~~~l~sL~dg~~KMSKS~ 288 (419)
.|.+. +| +||||++
T Consensus 228 ---ll~~~-~g-~kLSKr~ 241 (299)
T PRK05710 228 ---LVLNA-DG-QKLSKQN 241 (299)
T ss_pred ---cccCC-CC-CcccccC
Confidence 77776 66 6999996
No 33
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.22 E-value=0.00011 Score=77.87 Aligned_cols=191 Identities=19% Similarity=0.193 Sum_probs=111.0
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcCCcch-h
Q 014776 86 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (419)
Q Consensus 86 ~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~v~~-~ 163 (419)
.|||.+||||...++.+|.--... +++++=|=| + ++. ....+....+..++.-+||+++. ..|.||+-.+ |
T Consensus 9 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieD-t---D~~--R~~~~~~~~i~~~L~wlGl~~de-~~~~QS~r~~~y 81 (470)
T TIGR00464 9 SPTGYLHIGGARTALFNYLFAKHTGGEFILRIED-T---DLE--RNIEEAEEAILEGLKWLGISWDE-GPYYQSQRLDIY 81 (470)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCc-C---CCc--cCChHHHHHHHHHHHHCCCCCCC-CeeehhCCHHHH
Confidence 578999999999999999644333 344444433 3 211 22234556777788889999985 4899999532 2
Q ss_pred hHHHHH-------HhccccHHHHhhhhh-------------------HHHHHHh--hCC---------C-C-c-----cc
Q 014776 164 VELMWL-------LSSATPIGWLNKMIQ-------------------FKEKSHK--AGG---------E-N-V-----GV 199 (419)
Q Consensus 164 ~el~w~-------L~~~~~v~~l~r~~~-------------------~k~~~~~--~~~---------~-~-~-----~~ 199 (419)
.+..-. +-|.++-.+++.+.. -.+.... .|. . . + -.
T Consensus 82 ~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~~~ 161 (470)
T TIGR00464 82 KKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQVR 161 (470)
T ss_pred HHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCceEEEEcCCCCceeEEeccc
Confidence 222111 448888777754311 0000000 000 0 0 0 00
Q ss_pred hhhh----------------hhHHHH---HhhhhcccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccc
Q 014776 200 ALLT----------------YPVLMA---SDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260 (419)
Q Consensus 200 g~l~----------------YPvLQa---ADil~~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f 260 (419)
|.+. +|...- .|=...+.|+|..|.||..|...-..+.+.|+ +
T Consensus 162 G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg------------------~ 223 (470)
T TIGR00464 162 GEITFQNSELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALG------------------W 223 (470)
T ss_pred ceEEecCccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcC------------------C
Confidence 1111 222211 11122379999999999999988888887764 4
Q ss_pred cCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC------CHHHHHHHhhh
Q 014776 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 310 (419)
Q Consensus 261 ~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~~KI~k 310 (419)
..|...+.+ .+..+ +| +||||.. +.+.|.| .|+.+.+-+..
T Consensus 224 ~~p~~~H~p---~l~~~-~g-~kLSKR~----g~~~l~~l~~~g~~p~a~~~~~~~ 270 (470)
T TIGR00464 224 KIPVFAHLP---MILDE-DG-KKLSKRD----GATSIMQFKEQGYLPEALINYLAL 270 (470)
T ss_pred CCCeEEEEe---eeecC-CC-ccccccC----CCccHHHHHHCCCCHHHHHHHHHH
Confidence 567666654 55665 56 6999996 3555543 57777766654
No 34
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.20 E-value=3.1e-05 Score=82.38 Aligned_cols=197 Identities=16% Similarity=0.169 Sum_probs=117.1
Q ss_pred eEEEecCCC--CcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEE
Q 014776 80 RIVSGVQPT--GSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (419)
Q Consensus 80 ~i~tGi~PT--G~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 156 (419)
.|.+.|.|| |.+||||...++.+|.--+.. +++++=|-|.-. .....+....+..++..+|||++. ..|+
T Consensus 4 ~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~------~R~~~~~~~~i~~~L~WLGl~wDe-~py~ 76 (513)
T PRK14895 4 NVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDTDK------ERSTKEAVEAIFSGLKWLGLDWNG-EVIF 76 (513)
T ss_pred CeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCCCc------cccChHHHHHHHHHHHHcCCCCCC-Ccee
Confidence 456777777 999999999999999754443 455555555311 122234555677888899999984 3799
Q ss_pred cCCcch-h---hHHHHH----HhccccHHHHhhhhh----------HHHHHHhh-------CC---------CC--c---
Q 014776 157 QSHVRA-H---VELMWL----LSSATPIGWLNKMIQ----------FKEKSHKA-------GG---------EN--V--- 197 (419)
Q Consensus 157 qS~v~~-~---~el~w~----L~~~~~v~~l~r~~~----------~k~~~~~~-------~~---------~~--~--- 197 (419)
||+-.+ | .+...- +-|+++-.+|+.+.. |...-+.. +. .. +
T Consensus 77 QSeR~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~~iR~k~p~~~~~~~~ 156 (513)
T PRK14895 77 QSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPREGSITIH 156 (513)
T ss_pred EeCcHHHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCeeEEEEcCCCCceEEE
Confidence 999532 2 221111 458888777764421 10000000 00 00 0
Q ss_pred --cchhhhh----------------hHHHHHhh---hhcccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCC
Q 014776 198 --GVALLTY----------------PVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256 (419)
Q Consensus 198 --~~g~l~Y----------------PvLQaADi---l~~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~ 256 (419)
-.|.+.+ |..+-|.+ ...+.++|..|.||..|.-.-..+.+.|+
T Consensus 157 D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG--------------- 221 (513)
T PRK14895 157 DTLQGEVVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFG--------------- 221 (513)
T ss_pred eecccceecccccCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcC---------------
Confidence 0011111 22222211 22378999999999999888888877754
Q ss_pred CccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC------CHHHHHHHhhh
Q 014776 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 310 (419)
Q Consensus 257 ~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~~KI~k 310 (419)
+..|...+.+ +|.++ +| +||||.+. ...+.+ .|+.|.+-+..
T Consensus 222 ---~~~p~~~H~p---lv~~~-~g-~KLSKR~g----~~~i~~~r~~G~~Peai~n~la~ 269 (513)
T PRK14895 222 ---YAVPSMTHIP---LIHGA-DG-AKLSKRHG----ALGIEAYKDMGYLPESLCNYLLR 269 (513)
T ss_pred ---CCCCeEEEEE---eEEcC-CC-CccccccC----chhHHHHHHCCCCHHHHHHHHHH
Confidence 4567776664 77777 56 69999973 334432 57777777764
No 35
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=98.20 E-value=7.6e-06 Score=68.95 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=44.1
Q ss_pred EEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHH
Q 014776 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAI 141 (419)
Q Consensus 81 i~tGi~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~ 141 (419)
+++|-.+ |.+|+||+.+ ++.+.++++ .+++.++|.|+.+.+.+...++++.....+.
T Consensus 2 ~~~~G~F-dp~H~GH~~l-~~~a~~~~d--~~i~~i~~~~~~~~~~~~~~~~~R~~~l~~~ 58 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKL-ICRAKGIAD--QCVVRIDDNPPVKVWQDPHELEERKESIEED 58 (105)
T ss_pred EEeCCCC-CCCCHHHHHH-HHHHHHhCC--cEEEEEcCCCcccccCChHHHHHHHHHHHHH
Confidence 5678888 9999999987 688888773 5899999999988655667777666555543
No 36
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=98.14 E-value=9.9e-05 Score=78.35 Aligned_cols=193 Identities=19% Similarity=0.176 Sum_probs=116.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCce------EEEEcCC
Q 014776 86 QPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA------SVFVQSH 159 (419)
Q Consensus 86 ~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~------~if~qS~ 159 (419)
.|||.+||||...++.+|.--...+-.+|+=-|.+-.. ....+....+..++.-+||+.|.. -.|.||+
T Consensus 12 SPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDtD~~-----R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gpy~QS~ 86 (476)
T PRK01406 12 SPTGYLHIGGARTALFNWLFARHHGGKFILRIEDTDQE-----RSTEEAEEAILEGLKWLGLDWDEGPDGGPYGPYRQSE 86 (476)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCC-----CCChHHHHHHHHHHHHCCCCCCCCCccCCCCceehhc
Confidence 46799999999999999965444333444444443221 223345556777788899999864 1599999
Q ss_pred cch-hhHHHH-------HHhccccHHHHhhhhhH--H-----------------HHHHh--hCC----------------
Q 014776 160 VRA-HVELMW-------LLSSATPIGWLNKMIQF--K-----------------EKSHK--AGG---------------- 194 (419)
Q Consensus 160 v~~-~~el~w-------~L~~~~~v~~l~r~~~~--k-----------------~~~~~--~~~---------------- 194 (419)
-.+ |.+..- .+-|.++-.+|.....- + +..+. .|.
T Consensus 87 r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~p~~~~~~~ 166 (476)
T PRK01406 87 RLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEVVF 166 (476)
T ss_pred CHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEcCCCCceEE
Confidence 532 222111 14588888777543110 0 00000 000
Q ss_pred ----------CCccchhhh------hhHHHHHhhhh---cccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCC
Q 014776 195 ----------ENVGVALLT------YPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (419)
Q Consensus 195 ----------~~~~~g~l~------YPvLQaADil~---~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~ 255 (419)
.+..++-++ +|..+.||++- .+.|+|..|.||..|.-.-..+.+.|+
T Consensus 167 ~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG-------------- 232 (476)
T PRK01406 167 DDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALG-------------- 232 (476)
T ss_pred EEeccceEEeccccCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhC--------------
Confidence 000111111 66667777743 478999999999999988888888765
Q ss_pred CCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC------CHHHHHHHhhh
Q 014776 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 310 (419)
Q Consensus 256 ~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~~KI~k 310 (419)
+..|...+.+ .+.++ +| +||||.+ +.+.+.| .|+.|.+-+.+
T Consensus 233 ----~~~p~~~H~p---li~~~-~g-~klSKR~----g~~~l~~l~~~G~~p~Ai~n~l~~ 280 (476)
T PRK01406 233 ----WEVPVFAHLP---LILGP-DG-KKLSKRH----GATSVEQYRDMGYLPEALLNYLAL 280 (476)
T ss_pred ----CCCCeEEEee---eeeCC-CC-CcccCcC----CccCHHHHHHCCCCHHHHHHHHHH
Confidence 4557766654 56666 55 6999996 3555543 56666665544
No 37
>PLN02627 glutamyl-tRNA synthetase
Probab=98.01 E-value=0.00073 Score=72.38 Aligned_cols=196 Identities=15% Similarity=0.122 Sum_probs=110.0
Q ss_pred EecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceE-------EE
Q 014776 83 SGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VF 155 (419)
Q Consensus 83 tGi~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~-------if 155 (419)
-.=.|||.+||||...++.+|.--....-.+|+=-|.+-.. ....+....+..++.-+||+.|... -|
T Consensus 50 FAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDTD~~-----R~~~e~~~~I~~~L~WLGl~wDegp~~gg~~gpy 124 (535)
T PLN02627 50 FAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLA-----RSTKESEEAVLRDLKWLGLDWDEGPDVGGEYGPY 124 (535)
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcCCCC-----CCChHHHHHHHHHHHHcCCCCCcCcccCCCCCCe
Confidence 34467799999999999999975544433344433333221 2223455567778888999998642 59
Q ss_pred EcCCcch-hhHHH-------HHHhccccHHHHhhhhhHHH-------------------HHHh--hCC-----------C
Q 014776 156 VQSHVRA-HVELM-------WLLSSATPIGWLNKMIQFKE-------------------KSHK--AGG-----------E 195 (419)
Q Consensus 156 ~qS~v~~-~~el~-------w~L~~~~~v~~l~r~~~~k~-------------------~~~~--~~~-----------~ 195 (419)
+||+-.+ |.+.+ ..+-|+++-.+++.+-.... ..+. .+. +
T Consensus 125 ~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~r~~~~~~~~~~~Yd~~cr~l~~ee~~~~~~~g~~~~iR~k~p~~~ 204 (535)
T PLN02627 125 RQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAMKEEAELKKLPPRYTGKWATASDEEVQAELAKGTPYTYRFRVPKEG 204 (535)
T ss_pred eeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHHHHHHHhcCCCcCCCCccccCCHHHHHHHHhCCCCceEEEEcCCCC
Confidence 9999532 22111 11458888777654321100 0000 000 0
Q ss_pred Cc-----cchhhh----------------hhHHHHHhh---hhcccceecccCchHHHHHHHHHHHHHHhhhhCCccccc
Q 014776 196 NV-----GVALLT----------------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251 (419)
Q Consensus 196 ~~-----~~g~l~----------------YPvLQaADi---l~~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k 251 (419)
.+ -.|.+. ||..+=|-+ .+.+.++|.=|.|...+--.-.-|.+.|+
T Consensus 205 ~~~~~D~i~G~i~~~~~~~~D~Vi~R~DG~PtY~fA~vVDD~~mgITHViRG~D~l~nTpkQi~ly~aLg---------- 274 (535)
T PLN02627 205 SVKIDDLIRGEVSWNTDTLGDFVLLRSNGQPVYNFCVAVDDATMGITHVIRAEEHLPNTLRQALIYKALG---------- 274 (535)
T ss_pred ceEEEeeeeeeeeeccccCCCeEEEecCCCccccccceecccccCCcEEEechhhhcChHHHHHHHHHcC----------
Confidence 00 011111 222221111 22368899999998765544444545443
Q ss_pred cCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC------CHHHHHHHhhh
Q 014776 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 310 (419)
Q Consensus 252 ~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~~KI~k 310 (419)
++.|...+.+ +|.+- +| +||||.+. .+.+.+ .|+.|.+-+..
T Consensus 275 --------~~~P~f~Hlp---li~~~-~g-~KLSKR~~----~~~v~~~r~~G~~PeAi~nyla~ 322 (535)
T PLN02627 275 --------FPMPRFAHVS---LILAP-DR-SKLSKRHG----ATSVGQFREMGYLPDAMVNYLAL 322 (535)
T ss_pred --------CCCCeEEEcc---ceeCC-CC-CccccccC----CccHHHHHHCCCCHHHHHHHHHH
Confidence 6778777765 77775 56 69999974 344432 68888887764
No 38
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.01 E-value=5.3e-05 Score=81.01 Aligned_cols=80 Identities=23% Similarity=0.300 Sum_probs=52.7
Q ss_pred CceEEEecCCCCcchhhhHHHHHHH--HHHHhhc--ccE-EEEEeCcc--------------------eecC-CC----C
Q 014776 78 KKRIVSGVQPTGSIHLGNYLGAIKN--WIALQNS--YET-LFFIVDLH--------------------AITL-PY----D 127 (419)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~ik~--~~~lQ~~--~~~-~i~IaDlh--------------------A~t~-~~----~ 127 (419)
+..|-||+-|||.+||||+...+.. |.+..+. .++ +|+.+|.| .++. |. .
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~ 98 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK 98 (515)
T ss_pred eEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc
Confidence 5788899999999999999776632 4444333 454 78889999 2222 11 2
Q ss_pred HHHHHHHHHHHHHHHHHcCcCCCceEEEEcCCc
Q 014776 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (419)
Q Consensus 128 ~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~v 160 (419)
..-...+-....+.+-.+||+ .+|+.+++.
T Consensus 99 ~s~~~h~~~~~~~~l~~~gi~---~e~~s~te~ 128 (515)
T TIGR00467 99 TSYAEHFLIPFLESLPVLGIN---PEFIRASKQ 128 (515)
T ss_pred HHHHHHHHHHHHHHHHHcCCe---EEEEEHHHh
Confidence 233334444556666678996 478888884
No 39
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=97.82 E-value=0.00045 Score=72.44 Aligned_cols=90 Identities=22% Similarity=0.274 Sum_probs=57.9
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcCCcch---
Q 014776 86 QPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA--- 162 (419)
Q Consensus 86 ~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~v~~--- 162 (419)
.|||.+||||...++.+|.--...+-.+|+==|.+-.. ....+....+..++.-+||+.|. .|.||+-.+
T Consensus 7 SPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDTD~~-----R~~~e~~~~I~~~L~WlGl~wDe--~y~QSeR~~~Y~ 79 (433)
T PRK12410 7 SPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDTDKE-----RNIEGKDKEILEILNLFGISWDK--LVYQSENLKFHR 79 (433)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcCCCC-----cCChHHHHHHHHHHHHcCCCCCC--CeehhccHHHHH
Confidence 48899999999999999975544433344433333221 22234556777788889999995 699999532
Q ss_pred -hhHHHHH----HhccccHHHHhhh
Q 014776 163 -HVELMWL----LSSATPIGWLNKM 182 (419)
Q Consensus 163 -~~el~w~----L~~~~~v~~l~r~ 182 (419)
+.+...- +-|.++-.+++.+
T Consensus 80 ~~a~~Li~~G~AY~C~cs~eel~~~ 104 (433)
T PRK12410 80 QMAEKLLSEKKAFACFCSEEELEAK 104 (433)
T ss_pred HHHHHHHHcCCeeeecCCHHHHHHH
Confidence 2222111 4588888777644
No 40
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.79 E-value=0.00031 Score=69.49 Aligned_cols=174 Identities=18% Similarity=0.179 Sum_probs=100.5
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcCCcch-h
Q 014776 86 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (419)
Q Consensus 86 ~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~v~~-~ 163 (419)
.|||.+||||...++.+|.--... +.+++=|=|.- +. ....+....+..++.-+||++++. .++||+-.+ +
T Consensus 8 SPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDtD----~~--R~~~~~~~~I~~dL~wLGl~wDe~-~~~QS~r~~~Y 80 (272)
T TIGR03838 8 SPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDLD----PP--REVPGAADDILRTLEAYGLHWDGE-VVYQSQRHALY 80 (272)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcCC----CC--CCChHHHHHHHHHHHHcCCCCCCC-eeeeeCCHHHH
Confidence 488999999999999999654443 34444444422 11 222345556777888889999864 578999543 2
Q ss_pred hHHHH-------HHhccccHHHHhhhh-----hHHHHHHh----hCCC---------------------------Cccch
Q 014776 164 VELMW-------LLSSATPIGWLNKMI-----QFKEKSHK----AGGE---------------------------NVGVA 200 (419)
Q Consensus 164 ~el~w-------~L~~~~~v~~l~r~~-----~~k~~~~~----~~~~---------------------------~~~~g 200 (419)
.+..- .+.|.+|-.++++.. .|...-+. ...+ ...++
T Consensus 81 ~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~~~~~~~~ 160 (272)
T TIGR03838 81 QAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQDLAAAVG 160 (272)
T ss_pred HHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEecCcccCC
Confidence 22111 145888888776541 11100000 0000 00011
Q ss_pred hh-h-----hhHHHHHhh---hhcccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCC
Q 014776 201 LL-T-----YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAG 271 (419)
Q Consensus 201 ~l-~-----YPvLQaADi---l~~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~ 271 (419)
-+ + ||..+=|-. ...+.++|.=|.|...+--.-.-|.+.|+ ++.|...+.+
T Consensus 161 D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg------------------~~~P~y~H~p-- 220 (272)
T TIGR03838 161 DFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLG------------------LPPPRYLHLP-- 220 (272)
T ss_pred CEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhC------------------CCCCeEEech--
Confidence 11 1 233332222 22468999999998876655555655543 6678776664
Q ss_pred cccccCCCCCCccccCCC
Q 014776 272 ARVMSLTDGLSKMSKSAP 289 (419)
Q Consensus 272 ~~l~sL~dg~~KMSKS~p 289 (419)
+|.+. +| +|+||++.
T Consensus 221 -ll~~~-~g-~kLSKR~~ 235 (272)
T TIGR03838 221 -LVVNA-DG-EKLSKQNG 235 (272)
T ss_pred -hhhCC-CC-CeeeccCC
Confidence 77776 66 69999973
No 41
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=97.79 E-value=0.00064 Score=71.54 Aligned_cols=191 Identities=21% Similarity=0.185 Sum_probs=108.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcCCcch-h
Q 014776 86 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (419)
Q Consensus 86 ~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~v~~-~ 163 (419)
.|||.+||||...++.+|.--... ++.++=|=| +-. ..........+..++..+|++.|. .|.||+.-+ +
T Consensus 10 SPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIED-TD~-----~Rs~~~~~~~I~e~L~wLGI~~De--~y~QSer~~~y 81 (445)
T PRK12558 10 SPTGYLHVGNARTALLNWLYARKHGGKFILRIDD-TDL-----ERSKQEYADAIAEDLKWLGINWDR--TFRQSDRFDRY 81 (445)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecc-CCc-----ccchHHHHHHHHHHHHHcCCCCCc--cccHHHHHHHH
Confidence 577999999999999999754443 344444433 321 123345556777788889999984 799999532 1
Q ss_pred hHHH-------HHHhccccHHHHhhhhhHH-------------------HHHHhh--CC----------CC-----ccch
Q 014776 164 VELM-------WLLSSATPIGWLNKMIQFK-------------------EKSHKA--GG----------EN-----VGVA 200 (419)
Q Consensus 164 ~el~-------w~L~~~~~v~~l~r~~~~k-------------------~~~~~~--~~----------~~-----~~~g 200 (419)
.+.. ..+-|.++-.+|+.+..-. +..+.. +. +. .--|
T Consensus 82 ~~~~e~L~e~G~AY~C~Ct~eel~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~D~i~G 161 (445)
T PRK12558 82 DEAAEKLKAAGRLYPCYETPEELELKRKIQLSRGLPPIYDRAALKLTEEEKAALEAEGRKPHWRFKLDDEPISWDDLIRG 161 (445)
T ss_pred HHHHHHHHHCCCEEEecCchHHHHHHHHHHHhCCCCCCCCcccccCCHHHHHhHHhcCCCceEEEecCCCceEEEEEeee
Confidence 1111 1145888877775432100 000000 00 00 0012
Q ss_pred hhhhhHHHHHhhhh-------------------cccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCcccc
Q 014776 201 LLTYPVLMASDILL-------------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFK 261 (419)
Q Consensus 201 ~l~YPvLQaADil~-------------------~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~ 261 (419)
.+.++.-..-|.+. .+.++|.-|.|...+--.-.-|.+.|+ ++
T Consensus 162 ~~~~~~~~~~D~Vi~R~dg~PtY~fA~vVDD~~m~ITHViRG~d~l~~t~~q~~l~~alg------------------~~ 223 (445)
T PRK12558 162 EQSIDAASLSDPVLIRADGSYLYTLPSVVDDIDMGITHIIRGEDHVTNTAVQIQIFEALG------------------AK 223 (445)
T ss_pred EeecccccCCCeEEEecCCCccccccceeccccCCCCEEEechhhhhCCHHHHHHHHHhC------------------CC
Confidence 22222211123222 258899999998765544444444433 56
Q ss_pred CCceecCCCCcccccCCCCCCccccCCCCCCCceecCC------CHHHHHHHhhhc
Q 014776 262 VPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (419)
Q Consensus 262 ~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~~KI~kA 311 (419)
.|+..+.| +|.+- +| +|+||.+. ...+.+ .|+.|.+-+...
T Consensus 224 ~P~f~H~p---li~~~-~g-~KLSKR~g----~~sv~~~r~~G~~Peai~n~la~l 270 (445)
T PRK12558 224 PPVFAHLS---LLTGA-DG-KGLSKRLG----GLSIRSLREDGIEPMAIASLLARL 270 (445)
T ss_pred CCeEEEcc---cccCC-Cc-ccccccCC----CcCHHHHHHCCCCHHHHHHHHHHH
Confidence 78877765 77774 56 79999973 333332 688888877653
No 42
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.78 E-value=0.00017 Score=73.55 Aligned_cols=75 Identities=21% Similarity=0.356 Sum_probs=36.4
Q ss_pred HHhhhhcccceecccCchHH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccc
Q 014776 209 ASDILLYQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMS 285 (419)
Q Consensus 209 aADil~~~adivpvG~DQ~~---h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMS 285 (419)
++---.++.|+.|.|.|... -...+.+||+++ || .+.|..+.-. +-++ .|.+|||
T Consensus 227 ~mRW~~lgVdfEp~GKDH~~~GGS~d~~~~I~~~i---~g--------------~~pP~~~~YE----~~~~-~g~~kmS 284 (360)
T PF01921_consen 227 PMRWAALGVDFEPFGKDHASPGGSYDTSKRIAREI---LG--------------YEPPVPFPYE----FFLD-KGGGKMS 284 (360)
T ss_dssp HHHHHHTT-SEEEEEHHHHCTTSHHHHHHHHHHHC---C-------------------EEEEE------EEE-S------
T ss_pred hhhhhhcCceeccCCCccCCCCCChhhHHHHHHHH---hC--------------CCCCCCCCee----EEEe-CCCcccc
Confidence 33344467999999999999 999999999764 45 4566655432 2233 3446999
Q ss_pred cCCCCCCCceecCC-----CHHHHHHHh
Q 014776 286 KSAPSDQSRINLLD-----PKDVIANKI 308 (419)
Q Consensus 286 KS~p~~~s~I~L~D-----spe~I~~KI 308 (419)
||. ++.|.+.| +||.++-=+
T Consensus 285 sSk---G~~~t~~e~L~~~~PE~lr~l~ 309 (360)
T PF01921_consen 285 SSK---GNGITPEEWLEYAPPESLRYLM 309 (360)
T ss_dssp -----------HHHHHTTS-HHHHHHHH
T ss_pred cCC---CCccCHHHHHHhcCHHHHHHHH
Confidence 997 67777766 677766544
No 43
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.71 E-value=0.00016 Score=70.19 Aligned_cols=161 Identities=21% Similarity=0.183 Sum_probs=95.3
Q ss_pred EecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcCCcc
Q 014776 83 SGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR 161 (419)
Q Consensus 83 tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~v~ 161 (419)
.|-.|||.+||||...++.+|+--+.. +..++=|-|.- +.-..........+.+++..+|++++ ..+.||+..
T Consensus 6 faPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDtD----~~r~~~~~~~~~~i~~dL~wLGl~~d--~~~~qS~r~ 79 (240)
T cd09287 6 FAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDTD----PRTKRPDPEAYDMIPEDLEWLGVKWD--EVVIASDRI 79 (240)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcCC----CCcccchHHHHHHHHHHHHHcCCCCC--CccchhccH
Confidence 366788999999999999888644332 33444444432 11101344455568889999999998 578999953
Q ss_pred -hhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHH---hhhhcccceecccCchHHHHHHHHHHH
Q 014776 162 -AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELA 237 (419)
Q Consensus 162 -~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaA---Dil~~~adivpvG~DQ~~h~eLaRdia 237 (419)
.+.+..-.|- .+-..|. ....+ +. ..+||..+=| |=...+.++|.-|.|-..+-..-.-+.
T Consensus 80 ~~y~~~~~~Li--------~~G~aY~--~~~~~-~~----~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q~~l~ 144 (240)
T cd09287 80 ELYYEYARKLI--------EMGGAYV--HPRTG-SK----YRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIY 144 (240)
T ss_pred HHHHHHHHHHH--------HcCCccc--CcccC-Cc----EEEEEccccceeeeccccCCCeEEechhhhhCCHHHHHHH
Confidence 2322211111 0111111 01111 11 1235555443 334468999999999888776666666
Q ss_pred HHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCC
Q 014776 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (419)
Q Consensus 238 ~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 288 (419)
+.|+ ++.|...+.+ +|.. +| .||||.+
T Consensus 145 ~~Lg------------------~~~P~~~H~p---ll~~--~~-~kLSKR~ 171 (240)
T cd09287 145 EYFG------------------WEYPETIHWG---RLKI--EG-GKLSTSK 171 (240)
T ss_pred HHcC------------------CCCCcEEeee---eecC--CC-Ceecccc
Confidence 6543 5667766654 5542 45 7999996
No 44
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.62 E-value=0.00027 Score=68.46 Aligned_cols=153 Identities=16% Similarity=0.091 Sum_probs=88.7
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcCCcch-h
Q 014776 86 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-H 163 (419)
Q Consensus 86 ~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~v~~-~ 163 (419)
.|||.+||||...++-+|..-... +..++=|=| . ++ .....+....+..++..+|++.+ .+++||+-.+ +
T Consensus 9 sPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieD-t---D~--~R~~~~~~~~I~~dL~wlGl~wD--~~~~QS~r~~~Y 80 (238)
T cd00807 9 EPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDD-T---NP--EKEEEEYVDSIKEDVKWLGIKPY--KVTYASDYFDQL 80 (238)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecC-C---CC--cccchHHHHHHHHHHHHcCCCCC--CceecccCHHHH
Confidence 578999999999999898654333 344433333 2 11 13334566678888889999999 5889999532 2
Q ss_pred hHHHHHH---hccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHH---hhhhcccceecccCchHHHHHHHHHHH
Q 014776 164 VELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELA 237 (419)
Q Consensus 164 ~el~w~L---~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaA---Dil~~~adivpvG~DQ~~h~eLaRdia 237 (419)
.+..-.| +...+ . ...+ + ...+||..+=| |=.+.+.++|.-|.|....-..-.-+.
T Consensus 81 ~~~~~~L~~~g~aY~-----------~--~~~~-~----~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~ 142 (238)
T cd00807 81 YEYAEQLIKKGKAYV-----------H--HRTG-D----KWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLC 142 (238)
T ss_pred HHHHHHHHHcCCeec-----------C--CCCC-C----CEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHH
Confidence 2111111 11111 0 0001 1 11235555533 444568999999999877655555555
Q ss_pred HHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCC
Q 014776 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (419)
Q Consensus 238 ~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 288 (419)
+.|+ ++.|..+.-. .+ +. +| .|+||++
T Consensus 143 ~aLg------------------~~~P~~~~~~---hl-n~-~g-~kLSKR~ 169 (238)
T cd00807 143 DALR------------------LYRPHQWEFS---RL-NL-TY-TVMSKRK 169 (238)
T ss_pred HHcC------------------CCCCceeEEE---EE-CC-CC-CCccCcC
Confidence 5543 5667432211 22 33 56 6999997
No 45
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.60 E-value=0.00011 Score=77.31 Aligned_cols=81 Identities=22% Similarity=0.352 Sum_probs=49.7
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHH-H--HHHhhc-ccE-EEEEeCcceecC--CC---CHHHHHHHH-----------
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGAIKN-W--IALQNS-YET-LFFIVDLHAITL--PY---DTQQLSKAT----------- 135 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~ik~-~--~~lQ~~-~~~-~i~IaDlhA~t~--~~---~~~~i~~~~----------- 135 (419)
...++=||+.|||.+||||+-=.+.- . ..|-+. +++ +|+++|.+-=+. |. +++.+.++.
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 45688899999999999997433311 1 223333 444 788888876553 21 334444433
Q ss_pred -------HH----HHHHHHHcCcCCCceEEEEcCCc
Q 014776 136 -------RE----TAAIYLACGIDNSKASVFVQSHV 160 (419)
Q Consensus 136 -------~~----~~a~~lA~GlDp~k~~if~qS~v 160 (419)
.. +...+--+|+++ +++.+|+.
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~~---E~~s~se~ 131 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIEV---EFVSATEL 131 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCce---EEEEhHHh
Confidence 23 333444569885 68888884
No 46
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=97.59 E-value=0.00046 Score=69.04 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=37.9
Q ss_pred CCCcchhhhHHHHH-----HHHHHHhhcccE-EEEEeCcceecCC------C--------------C-HHHHHHHHHHHH
Q 014776 87 PTGSIHLGNYLGAI-----KNWIALQNSYET-LFFIVDLHAITLP------Y--------------D-TQQLSKATRETA 139 (419)
Q Consensus 87 PTG~lHLGnylg~i-----k~~~~lQ~~~~~-~i~IaDlhA~t~~------~--------------~-~~~i~~~~~~~~ 139 (419)
|+|.+||||+.+.+ ..+.+++ .++| +++-.|.|.+-.. . . .+-.+++...+.
T Consensus 11 ~~g~~HiGH~~~~i~~D~i~R~~r~~-G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (312)
T cd00668 11 ANGSLHLGHALTHIIADFIARYKRMR-GYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGEHK 89 (312)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHhC-CCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 67999999998843 3333332 3565 4555788765321 0 1 233344455677
Q ss_pred HHHHHcCcCCC
Q 014776 140 AIYLACGIDNS 150 (419)
Q Consensus 140 a~~lA~GlDp~ 150 (419)
+++.++|+..+
T Consensus 90 ~~l~~lgI~~D 100 (312)
T cd00668 90 EDFRRLGISYD 100 (312)
T ss_pred HHHHHhCcccc
Confidence 78888998655
No 47
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.53 E-value=0.00034 Score=74.77 Aligned_cols=93 Identities=17% Similarity=0.132 Sum_probs=60.0
Q ss_pred EEEec--CCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcC
Q 014776 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (419)
Q Consensus 81 i~tGi--~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS 158 (419)
+.+=| .|||.+||||.-.++-+|.--....-.+++=-|.+ ++ .....+....+..++.-+|++++. ++.||
T Consensus 12 v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDT---Dp--~R~~~e~~~~I~~dL~WLGl~wD~--~~~qS 84 (523)
T PLN03233 12 IVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDT---NP--SKEKAEFEESIIEDLGKIEIKPDS--VSFTS 84 (523)
T ss_pred EEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC---CC--CccchHHHHHHHHHHHHhCCCCCC--Ccccc
Confidence 44444 46699999999999999964433333444444443 22 234445666788888889999984 78999
Q ss_pred Ccch-hhHHHHH-------HhccccHHHHh
Q 014776 159 HVRA-HVELMWL-------LSSATPIGWLN 180 (419)
Q Consensus 159 ~v~~-~~el~w~-------L~~~~~v~~l~ 180 (419)
+..+ +.+.+-. +.|.++-.+++
T Consensus 85 dr~~~y~~~a~~Li~~G~AY~C~cs~eel~ 114 (523)
T PLN03233 85 DYFEPIRCYAIILIEEGLAYMDDTPQEEMK 114 (523)
T ss_pred ccHHHHHHHHHHHHHcCCeEecCCCHHHHH
Confidence 9653 2222222 45888877764
No 48
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=97.51 E-value=0.008 Score=63.72 Aligned_cols=73 Identities=8% Similarity=-0.041 Sum_probs=47.0
Q ss_pred CceEE-EecCCCCcchhhhHHHHH--HHHHHHhhc--ccEEEEEe-Cccee-c-C-----CCCH-HHHHHHHHHHHHHHH
Q 014776 78 KKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLFFIV-DLHAI-T-L-----PYDT-QQLSKATRETAAIYL 143 (419)
Q Consensus 78 ~~~i~-tGi~PTG~lHLGnylg~i--k~~~~lQ~~--~~~~i~Ia-DlhA~-t-~-----~~~~-~~i~~~~~~~~a~~l 143 (419)
..++| +|--|.|.+||||..+.+ .-+.++++. ++|++... |.|.- + . ..++ +..+.++..+.+++.
T Consensus 23 ~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~~ 102 (463)
T PRK00260 23 KVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDMD 102 (463)
T ss_pred cceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 35666 899999999999987654 224444443 67776664 44321 1 0 1244 445566778899999
Q ss_pred HcCc-CCC
Q 014776 144 ACGI-DNS 150 (419)
Q Consensus 144 A~Gl-Dp~ 150 (419)
++|+ .|+
T Consensus 103 ~Lgi~~~d 110 (463)
T PRK00260 103 ALNVLPPD 110 (463)
T ss_pred HcCCCCCC
Confidence 9999 554
No 49
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.0004 Score=73.55 Aligned_cols=179 Identities=20% Similarity=0.185 Sum_probs=104.7
Q ss_pred EEEecC--CCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 014776 81 IVSGVQ--PTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (419)
Q Consensus 81 i~tGi~--PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~q 157 (419)
|.+=|. |||.+||||...++-+|..-+.. +++++=|=|. ++. ....+....+..++.-+||+++.. +++|
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDT----D~~--R~~~e~~~~I~~~L~WLGl~wde~-~~~Q 82 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDT----DPE--RETPEAEDAILEDLEWLGLDWDEG-PYYQ 82 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCC----CCC--CCCHHHHHHHHHHHHhcCCCCCCc-eeeh
Confidence 455555 55999999999999999644443 4555444442 221 222345556677788899999975 8999
Q ss_pred CCcch-hh-HHHHH------HhccccHHHHhhhhh-----------HH---------HHHHhhCC----------C--Cc
Q 014776 158 SHVRA-HV-ELMWL------LSSATPIGWLNKMIQ-----------FK---------EKSHKAGG----------E--NV 197 (419)
Q Consensus 158 S~v~~-~~-el~w~------L~~~~~v~~l~r~~~-----------~k---------~~~~~~~~----------~--~~ 197 (419)
|+..+ +. -..++ +-|.++-.+|+.+-. |. ++....+. . ..
T Consensus 83 S~r~~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~k~~~~~~ 162 (472)
T COG0008 83 SERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAHP 162 (472)
T ss_pred hhhHHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEEeCCCCCC
Confidence 99643 22 22233 348888866665421 11 01111000 0 00
Q ss_pred -------cchhhhhh------HHHHHhhhh------------cccceecccCchHHHHHHHHHHHHHHhhhhCCcccccc
Q 014776 198 -------GVALLTYP------VLMASDILL------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252 (419)
Q Consensus 198 -------~~g~l~YP------vLQaADil~------------~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~ 252 (419)
-.|.+..+ ++.-+|+.. .+.++|.-|.|...+=..-+-|-+.|+
T Consensus 163 ~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg----------- 231 (472)
T COG0008 163 GPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALG----------- 231 (472)
T ss_pred CCccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcC-----------
Confidence 01222222 233333322 368999999998877666666655543
Q ss_pred CCCCCccccCCceecCCCCcccccCCCCCCccccCCC
Q 014776 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (419)
Q Consensus 253 g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p 289 (419)
++.|...+.+ +|.+ -+| +||||++.
T Consensus 232 -------~~~P~~~H~~---li~~-~~g-~kLSKr~~ 256 (472)
T COG0008 232 -------WPPPVYAHLP---LLLN-EDG-KKLSKRKG 256 (472)
T ss_pred -------CCCCcEEEee---eeec-CCC-CeecCccC
Confidence 6678877765 7777 355 79999973
No 50
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.41 E-value=0.00091 Score=72.42 Aligned_cols=179 Identities=15% Similarity=0.127 Sum_probs=103.3
Q ss_pred eEEEec--CCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 014776 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (419)
Q Consensus 80 ~i~tGi--~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~q 157 (419)
.+.+=| .|||.+||||...++-+|..-+...-.+++==|.. ++. ....+....+..++..+||+++. .+++|
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDT---Dp~--R~~~e~~d~IleDL~WLGl~wDe-~~~~Q 125 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDT---NPS--KEKEHFEQAILDDLATLGVSWDV-GPTYS 125 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCC---CCc--ccCHHHHHHHHHHHHHCCCCCCC-ceeec
Confidence 344545 46699999999999999965444333344433332 222 34456677888889999999985 37889
Q ss_pred CCcch-hhHHHHH-------HhccccHHHHhhhh------hHHHH-----H---Hh--hCC--C--------------Cc
Q 014776 158 SHVRA-HVELMWL-------LSSATPIGWLNKMI------QFKEK-----S---HK--AGG--E--------------NV 197 (419)
Q Consensus 158 S~v~~-~~el~w~-------L~~~~~v~~l~r~~------~~k~~-----~---~~--~~~--~--------------~~ 197 (419)
|+..+ +.+.+-. +.|.++-.+++... .+.+. . +. .+. + +.
T Consensus 126 Sdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~n~ 205 (601)
T PTZ00402 126 SDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNENK 205 (601)
T ss_pred cccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCCCC
Confidence 99653 2222211 35777766553321 11110 0 00 000 0 00
Q ss_pred cchh------------------hhhhHHHHHhhh---hcccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCC
Q 014776 198 GVAL------------------LTYPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256 (419)
Q Consensus 198 ~~g~------------------l~YPvLQaADil---~~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~ 256 (419)
+++- -.||..+=|-.+ +.+.++|..|.|...+-..-.-|.+.|+
T Consensus 206 ~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg--------------- 270 (601)
T PTZ00402 206 AMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALG--------------- 270 (601)
T ss_pred CccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhC---------------
Confidence 0100 134444433222 2468999999999888777777766654
Q ss_pred CccccCCceecCCCCcccccCCCCCCccccCC
Q 014776 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (419)
Q Consensus 257 ~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 288 (419)
+..|...+.+ + .++ +| .||||+.
T Consensus 271 ---~~~P~~~h~~---r-Ln~-~g-~kLSKRk 293 (601)
T PTZ00402 271 ---IRKPIVEDFS---R-LNM-EY-SVMSKRK 293 (601)
T ss_pred ---CCCceEEEEe---e-EcC-CC-CcccccC
Confidence 5667766653 4 355 56 5999996
No 51
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=97.28 E-value=0.0018 Score=65.24 Aligned_cols=91 Identities=14% Similarity=0.088 Sum_probs=52.9
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcCCcchh--
Q 014776 86 QPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH-- 163 (419)
Q Consensus 86 ~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~v~~~-- 163 (419)
.|||.|||||...++-+|..-....-.+++=-|.+ ++. ....+....+..++.-+||+++ -..+.||+-.+.
T Consensus 9 sPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDt---D~~--R~~~~~~~~i~~~L~wlGl~~D-~~~~~QS~r~~~Y~ 82 (314)
T PF00749_consen 9 SPTGYLHIGHARTALLNYLFARKYGGKFILRIEDT---DPE--RCRPEFYDAILEDLRWLGLEWD-YGPYYQSDRLEIYQ 82 (314)
T ss_dssp -SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETS---STT--TCHHHHHHHHHHHHHHHT---S-TCEEEGGGGHHHHH
T ss_pred CCCCCcccchhHHHHHHHHHHhccCceEEEecccc---ccc--cchhhHHHHHHhheeEEEEecC-CeEEeHHHHHHHHH
Confidence 57899999999999999965444333444433333 221 2233555667778888999987 357889996432
Q ss_pred --hHHH----HHHhccccHHHHhhh
Q 014776 164 --VELM----WLLSSATPIGWLNKM 182 (419)
Q Consensus 164 --~el~----w~L~~~~~v~~l~r~ 182 (419)
.+.. ..+.|.++-.+++..
T Consensus 83 ~~~~~L~~~g~aY~C~Csr~~l~~~ 107 (314)
T PF00749_consen 83 EAAEKLIDKGKAYPCFCSREELKAA 107 (314)
T ss_dssp HHHHHHHHTTSEEEEESEHHHHHHH
T ss_pred HHHHHHhhcCCCccccCCHHHHHHH
Confidence 2211 224577777666544
No 52
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.28 E-value=0.002 Score=69.74 Aligned_cols=180 Identities=19% Similarity=0.153 Sum_probs=105.0
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 014776 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (419)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~q 157 (419)
.+...+=.|||.+||||...++-+|.--... +.+++=|-|. ++.......+....+..++..+|++++. ++.|
T Consensus 102 V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDT----Dpk~~R~~~e~~~~I~edL~wLGl~wD~--~~~q 175 (567)
T PRK04156 102 VVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDT----DPRTKRPDPEAYDMILEDLKWLGVKWDE--VVIQ 175 (567)
T ss_pred EEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccC----CCCcccchHHHHHHHHHHHHHcCCCCCC--ccCc
Confidence 4556677778999999999999888543322 3444444443 2311123344556778888899999984 7899
Q ss_pred CCcch-hhHHHHH-------HhccccHHHHhhhhh------HH-----HHH---Hh--hC-------------C---CCc
Q 014776 158 SHVRA-HVELMWL-------LSSATPIGWLNKMIQ------FK-----EKS---HK--AG-------------G---ENV 197 (419)
Q Consensus 158 S~v~~-~~el~w~-------L~~~~~v~~l~r~~~------~k-----~~~---~~--~~-------------~---~~~ 197 (419)
|+..+ +.+.+-. +.|.++-.++++... +. +.. .. .| + .+.
T Consensus 176 Sdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n~ 255 (567)
T PRK04156 176 SDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPNP 255 (567)
T ss_pred ccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCCC
Confidence 99643 2221111 456666655533210 00 000 00 00 0 000
Q ss_pred c------------------chhhhhhHHHHH---hhhhcccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCC
Q 014776 198 G------------------VALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRG 256 (419)
Q Consensus 198 ~------------------~g~l~YPvLQaA---Dil~~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~ 256 (419)
+ -+-..||.++=| |-.+.+.++|..|.|...+-..-..+.+.|+
T Consensus 256 ~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg--------------- 320 (567)
T PRK04156 256 SVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFG--------------- 320 (567)
T ss_pred CccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcC---------------
Confidence 0 011236665433 3344579999999999888777777766654
Q ss_pred CccccCCceecCCCCcccccCCCCCCccccCC
Q 014776 257 GAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (419)
Q Consensus 257 ~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 288 (419)
+..|...+.+ +|. + +| .|||||.
T Consensus 321 ---~~~P~~~H~~---~L~-~-~g-~kLSKR~ 343 (567)
T PRK04156 321 ---WEYPETIHYG---RLK-I-EG-FVLSTSK 343 (567)
T ss_pred ---CCCceEEEcc---eec-C-CC-ceeeccc
Confidence 4568777764 664 4 56 5999996
No 53
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.27 E-value=0.0026 Score=60.69 Aligned_cols=71 Identities=11% Similarity=0.003 Sum_probs=45.5
Q ss_pred ceEEEecCCCCcchhhhHHHHH--HHHHHHhhc--ccEEEEE-eCcceecC-------CCCH-HHHHHHHHHHHHHHHHc
Q 014776 79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYLAC 145 (419)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i--k~~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~lA~ 145 (419)
....+|-=|-|.+||||....+ .-+.++++. ++|+++. .|.|..=. ..++ +-.++++..+.+++.++
T Consensus 22 ~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l 101 (213)
T cd00672 22 TMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKAL 101 (213)
T ss_pred eEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 4455788888999999976544 223444443 5665554 45554311 1244 55567777888899999
Q ss_pred CcCC
Q 014776 146 GIDN 149 (419)
Q Consensus 146 GlDp 149 (419)
|+.+
T Consensus 102 ~i~~ 105 (213)
T cd00672 102 NVLP 105 (213)
T ss_pred CCCC
Confidence 9986
No 54
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=97.25 E-value=0.00093 Score=63.37 Aligned_cols=147 Identities=17% Similarity=0.220 Sum_probs=78.5
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--ccEE-EEEeCccee-cCC-----CCH-HHHHHHHHHHHHHHHHcCcCC
Q 014776 82 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YETL-FFIVDLHAI-TLP-----YDT-QQLSKATRETAAIYLACGIDN 149 (419)
Q Consensus 82 ~tGi~PTG~lHLGnylg~i--k~~~~lQ~~--~~~~-i~IaDlhA~-t~~-----~~~-~~i~~~~~~~~a~~lA~GlDp 149 (419)
|++=-|+|.+||||..+++ .-+.++.+. ++|+ ....|.|.. +.. ..| +........+..++.++|+.+
T Consensus 6 ~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 85 (212)
T cd00671 6 FVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRF 85 (212)
T ss_pred ecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 6677799999999987754 223444443 5654 333433322 110 123 333344456788888999987
Q ss_pred CceEEEEcCCcchhhHHHHHHhccccHHHHhhh-hhHHHHH------HhhCCC-C----ccchhhhhhHHHHHhhh----
Q 014776 150 SKASVFVQSHVRAHVELMWLLSSATPIGWLNKM-IQFKEKS------HKAGGE-N----VGVALLTYPVLMASDIL---- 213 (419)
Q Consensus 150 ~k~~if~qS~v~~~~el~w~L~~~~~v~~l~r~-~~~k~~~------~~~~~~-~----~~~g~l~YPvLQaADil---- 213 (419)
+ .++..|++.......|.. |... ..++... ...++. . -+=|..+|. +.|+-
T Consensus 86 d--~~~~es~~~~~~~~~i~~--------L~~~g~~~~~~g~~~~~~~~~~~~~d~vl~rsdG~~~Y~---~~DlA~~~~ 152 (212)
T cd00671 86 D--VWFGESSYLGLMGKVVEL--------LEELGLLYEEDGALWLDLTEFGDDKDRVLVRSDGTYTYF---TRDIAYHLD 152 (212)
T ss_pred c--eecchhhhhhHHHHHHHH--------HHHCCCEEEeCCcEEEechhhCCCCCeEEEECCCCccch---HHHHHHHHH
Confidence 5 355666542211111110 0000 0000000 000000 0 022555665 34442
Q ss_pred --hccccee--cccCchHHHHHHHHHHHHHHh
Q 014776 214 --LYQSDFV--PVGEDQKQHLELTRELAERVN 241 (419)
Q Consensus 214 --~~~adiv--pvG~DQ~~h~eLaRdia~r~n 241 (419)
.+++|.+ .+|.||..|+.-.+.+++.++
T Consensus 153 ~~~~~~~~~i~v~g~~~~~~~~~~~~~~~~lg 184 (212)
T cd00671 153 KFERGADKIIYVVGADHHGHFKRLFAALELLG 184 (212)
T ss_pred HHhcCCCEEEEEECCCHHHHHHHHHHHHHHcC
Confidence 2578888 999999999999999999876
No 55
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.18 E-value=0.00058 Score=73.04 Aligned_cols=188 Identities=18% Similarity=0.210 Sum_probs=98.4
Q ss_pred EEEecCCCCcchhhhHHHHH--HHHHHHhhc--ccEE--EEEeCcceecCC------CCHHHH-HHHHHHHHHHHHHcCc
Q 014776 81 IVSGVQPTGSIHLGNYLGAI--KNWIALQNS--YETL--FFIVDLHAITLP------YDTQQL-SKATRETAAIYLACGI 147 (419)
Q Consensus 81 i~tGi~PTG~lHLGnylg~i--k~~~~lQ~~--~~~~--i~IaDlhA~t~~------~~~~~i-~~~~~~~~a~~lA~Gl 147 (419)
-|+|--|+|.+|+||.-+++ .-+.++.+. ++|. ..+.||-..+.. ..|+.+ ......+.++|..+|+
T Consensus 116 e~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~LgI 195 (507)
T PRK01611 116 EYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRLGV 195 (507)
T ss_pred EecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35799999999999987765 224444443 5653 445666433320 124333 3444577888899999
Q ss_pred CCCceEEEEcCCcchhhHHHHHHhccccHHHHhhh-hhH-HHHH------HhhCCC-C----ccchhhhhhHHHHHhhhh
Q 014776 148 DNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKM-IQF-KEKS------HKAGGE-N----VGVALLTYPVLMASDILL 214 (419)
Q Consensus 148 Dp~k~~if~qS~v~~~~el~w~L~~~~~v~~l~r~-~~~-k~~~------~~~~~~-~----~~~g~l~YPvLQaADil~ 214 (419)
.++ .+++.|+.-......+++. +|... ..| .+.. ..++++ . -+=|..+|. +.||-+
T Consensus 196 ~~D--~~~~es~~~~~~~~~~~~~------~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl~ksdG~~~Y~---t~Dia~ 264 (507)
T PRK01611 196 HFD--VWFSESELYYNGKVDEVVE------DLKEKGLLYVESDGALWVRLTEFGDDKDRVLIKSDGTYTYF---TRDIAY 264 (507)
T ss_pred eee--EEeecCcchhcchHHHHHH------HHHHCCCEEEeeCCcEEEEchhhCCCCCeEEEECCCCccch---HHHHHH
Confidence 875 3455555321111122211 11110 001 0000 011100 0 022555663 346644
Q ss_pred c-------ccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC--c-eecCCCCcccccCCCCCCcc
Q 014776 215 Y-------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP--E-PLIPPAGARVMSLTDGLSKM 284 (419)
Q Consensus 215 ~-------~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P--~-~l~~~~~~~l~sL~dg~~KM 284 (419)
. +--+-.+|.||..|+.-...+++.++. ..+ . .++... .++-+ .+| +||
T Consensus 265 ~~~k~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~------------------~~~~~~~~~h~~~-glv~~-~~g-~KM 323 (507)
T PRK01611 265 HLYKFERFDRVIYVVGADHHGHFKRLKAALKALGY------------------DPDALEVLLHQMV-GLVRG-GEG-VKM 323 (507)
T ss_pred HHHHHhhcCEEEEEECCChHHHHHHHHHHHHHcCC------------------CcccceEEEEEEE-EeeEC-CCC-Ccc
Confidence 3 234458999999999999999988762 111 1 122111 12222 244 699
Q ss_pred ccCCCCCCCceecCCCHHH
Q 014776 285 SKSAPSDQSRINLLDPKDV 303 (419)
Q Consensus 285 SKS~p~~~s~I~L~Dspe~ 303 (419)
|||. ++.|.+.|==++
T Consensus 324 SkR~---Gn~i~l~dll~~ 339 (507)
T PRK01611 324 STRA---GNVVTLDDLLDE 339 (507)
T ss_pred cCCC---CceeEHHHHHHH
Confidence 9997 688888763333
No 56
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=97.10 E-value=0.0021 Score=64.66 Aligned_cols=80 Identities=10% Similarity=0.083 Sum_probs=46.8
Q ss_pred CCCcchhhhHHHHHHH--HHHHhhc--ccE-EEEEeCcceecC-------CCCH-HHHHHHHHHHHHHHHHcCcCCCceE
Q 014776 87 PTGSIHLGNYLGAIKN--WIALQNS--YET-LFFIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNSKAS 153 (419)
Q Consensus 87 PTG~lHLGnylg~ik~--~~~lQ~~--~~~-~i~IaDlhA~t~-------~~~~-~~i~~~~~~~~a~~lA~GlDp~k~~ 153 (419)
|+|.+||||..+.+.. +.++++. ++| +++-.|.|..-. ..++ +-.+++...+.+++.++|+.++- .
T Consensus 11 ~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d~-~ 89 (314)
T cd00812 11 PSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYDW-R 89 (314)
T ss_pred CCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccceec-c
Confidence 6799999998875522 3344443 566 344467664321 1133 44556667788889999997752 2
Q ss_pred EEEcCCcchhhHHH
Q 014776 154 VFVQSHVRAHVELM 167 (419)
Q Consensus 154 if~qS~v~~~~el~ 167 (419)
.+.....++|.+..
T Consensus 90 ~~~~t~~~~~~~~v 103 (314)
T cd00812 90 REFTTCDPEYYKFT 103 (314)
T ss_pred cccccCCHHHHHHH
Confidence 23333455554433
No 57
>PLN02907 glutamate-tRNA ligase
Probab=97.03 E-value=0.0031 Score=70.22 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=58.2
Q ss_pred eEEEecC--CCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 014776 80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (419)
Q Consensus 80 ~i~tGi~--PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~q 157 (419)
.+.|=|. |||.+||||.-.++-+|.--....-.+++==|.+ ++. ....+....+..++.-+|+++++ ++.|
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDT---dp~--r~~~e~~~~I~~dl~wLG~~~d~--~~~q 285 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDT---NPS--KESDEFVENILKDIETLGIKYDA--VTYT 285 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC---CCC--cCChHHHHHHHHHHHHcCCCCCC--cccc
Confidence 4555555 5699999999999989854333233444444443 322 23335556777788889999985 6899
Q ss_pred CCcch-hhHHHHH-------HhccccHHHHh
Q 014776 158 SHVRA-HVELMWL-------LSSATPIGWLN 180 (419)
Q Consensus 158 S~v~~-~~el~w~-------L~~~~~v~~l~ 180 (419)
|+..+ +.+.+-. +.|.++..+++
T Consensus 286 S~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~ 316 (722)
T PLN02907 286 SDYFPQLMEMAEKLIKEGKAYVDDTPREQMR 316 (722)
T ss_pred cccHHHHHHHHHHHHHcCCeeecCCCHHHHH
Confidence 99753 2222211 34777766554
No 58
>PLN02859 glutamine-tRNA ligase
Probab=97.01 E-value=0.0025 Score=70.93 Aligned_cols=89 Identities=13% Similarity=0.076 Sum_probs=56.6
Q ss_pred cCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcCCcc-hh
Q 014776 85 VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR-AH 163 (419)
Q Consensus 85 i~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~v~-~~ 163 (419)
=.|||.+||||.-.++.+|.--+...-.+++=-|.+ ++. ....+....+..++.-+|+++++ +++||++. .+
T Consensus 271 PsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDT---dp~--r~~~e~~~~I~edL~WLG~~~d~--~~~qSd~f~~~ 343 (788)
T PLN02859 271 PEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDT---NPE--AEKKEYIDHIEEIVEWMGWEPFK--ITYTSDYFQEL 343 (788)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC---CCC--ccchHHHHHHHHHHHHcCCCCCC--cccccHhHHHH
Confidence 356799999999999988864433333444444443 222 23345566777778888999985 68999975 34
Q ss_pred hHHHHH-------HhccccHHHHh
Q 014776 164 VELMWL-------LSSATPIGWLN 180 (419)
Q Consensus 164 ~el~w~-------L~~~~~v~~l~ 180 (419)
-+.+-. +.|.++-.+++
T Consensus 344 Y~~A~~Li~~G~AY~C~ct~eei~ 367 (788)
T PLN02859 344 YELAVELIRRGHAYVDHQTPEEIK 367 (788)
T ss_pred HHHHHHHHHcCCeEeccCCHHHHH
Confidence 333222 34777776554
No 59
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=95.82 E-value=0.038 Score=59.70 Aligned_cols=95 Identities=14% Similarity=0.022 Sum_probs=59.9
Q ss_pred EEEec--CCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcC
Q 014776 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (419)
Q Consensus 81 i~tGi--~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS 158 (419)
|.+=| .|||.+||||.-.++.+|.--+...-.+++=-|.+ ++. ....+....+..++.-+|++++. .+++||
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDT---d~~--r~~~e~~~~I~~dL~wLGi~~d~-~~~~qS 103 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDT---NPE--KEDQEYVDSIKEDVRWLGFDWSG-ELRYAS 103 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC---CCC--cCChHHHHHHHHHHHHcCCCCCC-Cceeee
Confidence 44444 56699999999999988864443333444444443 221 23345666777888889999943 378899
Q ss_pred Ccch-hhHHHHH-------HhccccHHHHhh
Q 014776 159 HVRA-HVELMWL-------LSSATPIGWLNK 181 (419)
Q Consensus 159 ~v~~-~~el~w~-------L~~~~~v~~l~r 181 (419)
+..+ +.+.+.. +.|.++-.++++
T Consensus 104 ~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~ 134 (554)
T PRK05347 104 DYFDQLYEYAVELIKKGKAYVDDLSAEEIRE 134 (554)
T ss_pred cCHHHHHHHHHHHHHcCCEeeCCCCHHHHHH
Confidence 9654 4343333 348888766643
No 60
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=95.66 E-value=0.034 Score=60.10 Aligned_cols=91 Identities=13% Similarity=0.035 Sum_probs=58.1
Q ss_pred ecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcCCcch-
Q 014776 84 GVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (419)
Q Consensus 84 Gi~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~v~~- 162 (419)
.=.|||.|||||...++.+|.--+...-.+++=-|.+ ++. ....+....+..++.-+|+++++ ++.||++.+
T Consensus 57 aPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDT---Dp~--r~~~e~~~~I~~dL~wLGi~~D~--~~~qS~y~~~ 129 (574)
T PTZ00437 57 PPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDT---NPE--TEEQVYIDAIMEMVKWMGWKPDW--VTFSSDYFDQ 129 (574)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC---Ccc--ccChHHHHHHHHHHHHcCCCCCC--CCcCchhHHH
Confidence 4456799999999999988864443333444433433 221 34445666788888899999985 568999754
Q ss_pred hhHHHHH-------HhccccHHHHhh
Q 014776 163 HVELMWL-------LSSATPIGWLNK 181 (419)
Q Consensus 163 ~~el~w~-------L~~~~~v~~l~r 181 (419)
+-+.+-. +.|.++-.++++
T Consensus 130 ~ye~A~~Li~~G~AY~C~cs~eei~~ 155 (574)
T PTZ00437 130 LHEFAVQLIKDGKAYVDHSTPDELKQ 155 (574)
T ss_pred HHHHHHHHHHcCCEEEcCCCHHHHHH
Confidence 3222222 348887766653
No 61
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=95.58 E-value=0.039 Score=59.76 Aligned_cols=93 Identities=17% Similarity=0.114 Sum_probs=58.6
Q ss_pred eEEEecC--CCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEE
Q 014776 80 RIVSGVQ--PTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (419)
Q Consensus 80 ~i~tGi~--PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~ 156 (419)
.+.+=|. |||.+||||...++-+|.--+.. +.+++=+=| + ++. ....+....+..++..+|++++ .++.
T Consensus 93 ~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidD-T---Dp~--R~~~e~~~~I~edL~wLGi~~d--~~~~ 164 (560)
T TIGR00463 93 EVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDD-T---DPR--RVKPEAYDMILEDLDWLGVKGD--EVVY 164 (560)
T ss_pred eeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCc-C---Ccc--cccHHHHHHHHHHHHHcCCCCC--cccc
Confidence 4555555 55999999999999888543322 334333333 2 222 3334566678888889999998 4789
Q ss_pred cCCcch-hhHHHHH-------HhccccHHHHh
Q 014776 157 QSHVRA-HVELMWL-------LSSATPIGWLN 180 (419)
Q Consensus 157 qS~v~~-~~el~w~-------L~~~~~v~~l~ 180 (419)
||+..+ +.+..-. +.|.++-.+++
T Consensus 165 qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~ 196 (560)
T TIGR00463 165 QSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFR 196 (560)
T ss_pred ccccHHHHHHHHHHHHHcCCceeecCCHHHHH
Confidence 999643 2222211 45788776664
No 62
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=95.57 E-value=0.14 Score=54.41 Aligned_cols=73 Identities=12% Similarity=-0.018 Sum_probs=45.8
Q ss_pred ceEEEecCCCCcchhhhHHHHHH--HHHHHhhc--ccEEEEE-eCcceec--C-----CCCH-HHHHHHHHHHHHHHHHc
Q 014776 79 KRIVSGVQPTGSIHLGNYLGAIK--NWIALQNS--YETLFFI-VDLHAIT--L-----PYDT-QQLSKATRETAAIYLAC 145 (419)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~ik--~~~~lQ~~--~~~~i~I-aDlhA~t--~-----~~~~-~~i~~~~~~~~a~~lA~ 145 (419)
....+|.-|-|.+||||..+.+. -+.++++. ++|.+.. .|.|.-- . ..++ +..+.+...+..++.++
T Consensus 23 ~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~L 102 (465)
T TIGR00435 23 KMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKAL 102 (465)
T ss_pred eEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 34557888889999999877552 23444443 6776554 3555321 0 1244 44456667788899999
Q ss_pred CcCCCc
Q 014776 146 GIDNSK 151 (419)
Q Consensus 146 GlDp~k 151 (419)
|+.++.
T Consensus 103 gI~~d~ 108 (465)
T TIGR00435 103 NVLPPD 108 (465)
T ss_pred CCCCCc
Confidence 997543
No 63
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=95.48 E-value=0.05 Score=58.51 Aligned_cols=91 Identities=11% Similarity=-0.020 Sum_probs=57.4
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcCCcch-hh
Q 014776 86 QPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA-HV 164 (419)
Q Consensus 86 ~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~v~~-~~ 164 (419)
.|||.+||||...++-+|.--+...-.+++=-|.+ ++ .....+....+..++.-+|++++. .+++||+..+ +.
T Consensus 8 sPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDT---d~--~r~~~e~~~~I~~dL~wLG~~~d~-~~~~qS~~~~~~~ 81 (522)
T TIGR00440 8 EPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDT---NP--VKEDPEYVESIKRDVEWLGFKWEG-KIRYSSDYFDELY 81 (522)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCC---Cc--ccCChHHHHHHHHHHHHcCCCCCC-CceEccccHHHHH
Confidence 58899999999999999864443333444444443 22 133345666778888889999952 3678999643 33
Q ss_pred HHHHH-------HhccccHHHHhhh
Q 014776 165 ELMWL-------LSSATPIGWLNKM 182 (419)
Q Consensus 165 el~w~-------L~~~~~v~~l~r~ 182 (419)
+.+-. +.|.++-.++++.
T Consensus 82 ~~a~~Li~~G~AY~c~cs~eel~~~ 106 (522)
T TIGR00440 82 RYAEELIKKGLAYVDELTPEEIREY 106 (522)
T ss_pred HHHHHHHHcCCEEeecCCHHHHHHh
Confidence 22222 3488887665443
No 64
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=95.10 E-value=0.075 Score=59.67 Aligned_cols=96 Identities=13% Similarity=0.121 Sum_probs=58.5
Q ss_pred EEEec--CCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcC
Q 014776 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (419)
Q Consensus 81 i~tGi--~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS 158 (419)
|.|=| .|||.+||||...++-+|.--+...-.+++==|.+ ++. ....+....+..++.-+|++++. .++.||
T Consensus 32 v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDT---d~~--r~~~e~~~~I~~dl~wLG~~wd~-~~~~qS 105 (771)
T PRK14703 32 VVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDT---NPE--TEDTEYVEAIKDDVRWLGFDWGE-HLYYAS 105 (771)
T ss_pred eEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCC---CCC--cCChHHHHHHHHHHHHcCCCCCC-CceEee
Confidence 44545 46699999999999988864433333344433433 222 23345666777888889999874 368899
Q ss_pred Ccch-hhHHH-HH------HhccccHHHHhhh
Q 014776 159 HVRA-HVELM-WL------LSSATPIGWLNKM 182 (419)
Q Consensus 159 ~v~~-~~el~-w~------L~~~~~v~~l~r~ 182 (419)
+..+ |.+.+ ++ +.|.++-.++++.
T Consensus 106 ~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~ 137 (771)
T PRK14703 106 DYFERMYAYAEQLIKMGLAYVDSVSEEEIREL 137 (771)
T ss_pred cCHHHHHHHHHHHHHcCCcccCcCCHHHHHHH
Confidence 9643 22221 11 4578776655433
No 65
>PLN02946 cysteine-tRNA ligase
Probab=93.89 E-value=0.65 Score=50.52 Aligned_cols=72 Identities=14% Similarity=0.011 Sum_probs=42.4
Q ss_pred CceEE-EecCCCCcchhhhHHHHH--HHHHHHhhc--ccEEEEE-eCcce--ecC-----CCCH-HHHHHHHHHHHHHHH
Q 014776 78 KKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLFFI-VDLHA--ITL-----PYDT-QQLSKATRETAAIYL 143 (419)
Q Consensus 78 ~~~i~-tGi~PTG~lHLGnylg~i--k~~~~lQ~~--~~~~i~I-aDlhA--~t~-----~~~~-~~i~~~~~~~~a~~l 143 (419)
+.++| .|.-+-|.+||||....+ .-+.++.+. ++|++.. .|.|. ++. ..++ +..++++..+..++.
T Consensus 80 ~v~~Y~CGpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~~ 159 (557)
T PLN02946 80 KVGMYVCGVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDMA 159 (557)
T ss_pred ceeEEEeCCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34555 455555899999987755 223444443 5765443 34442 111 1255 555667778888999
Q ss_pred HcCcCC
Q 014776 144 ACGIDN 149 (419)
Q Consensus 144 A~GlDp 149 (419)
++|+.+
T Consensus 160 ~LnI~~ 165 (557)
T PLN02946 160 YLHCLP 165 (557)
T ss_pred HCCCCC
Confidence 999853
No 66
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=92.32 E-value=0.42 Score=51.97 Aligned_cols=77 Identities=21% Similarity=0.326 Sum_probs=53.0
Q ss_pred CCCCcchhhhHHHHH--HHHHHHhhc--ccE-EEEEeCcceecC-------CCCH-HHHHHHHHHHHHHHHHcCcCCCce
Q 014776 86 QPTGSIHLGNYLGAI--KNWIALQNS--YET-LFFIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNSKA 152 (419)
Q Consensus 86 ~PTG~lHLGnylg~i--k~~~~lQ~~--~~~-~i~IaDlhA~t~-------~~~~-~~i~~~~~~~~a~~lA~GlDp~k~ 152 (419)
-|.|.+||||....+ .-|.++|+. ++| +++-.|-|..-. ..+| +-+.++......+|.+++|+-|
T Consensus 15 Y~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l~IsfD-- 92 (558)
T COG0143 15 YPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKALNISFD-- 92 (558)
T ss_pred CCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccc--
Confidence 477999999987766 337788775 565 455578886532 1355 5566777789999999999865
Q ss_pred EEEEcCCcchhhH
Q 014776 153 SVFVQSHVRAHVE 165 (419)
Q Consensus 153 ~if~qS~v~~~~e 165 (419)
.|....-+.|.+
T Consensus 93 -~F~rTt~~~h~~ 104 (558)
T COG0143 93 -NFIRTTSPEHKE 104 (558)
T ss_pred -ccccCCCHHHHH
Confidence 455555554543
No 67
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=92.16 E-value=0.44 Score=52.95 Aligned_cols=84 Identities=21% Similarity=0.383 Sum_probs=53.9
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEEEEE-eCcceecC-------CCCH-HHHHHHHHHHHHHHH
Q 014776 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL 143 (419)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~l 143 (419)
+..|.|++ -|+|.+||||..+.+.. +.++++. ++|+++- .|-|..-. ..++ +...+++..+.+++.
T Consensus 3 ~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~ 82 (673)
T PRK00133 3 KILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFA 82 (673)
T ss_pred CEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45677777 68999999998775522 4445544 5776555 45554321 1244 556677788899999
Q ss_pred HcCcCCCceEEEEcCCcchhh
Q 014776 144 ACGIDNSKASVFVQSHVRAHV 164 (419)
Q Consensus 144 A~GlDp~k~~if~qS~v~~~~ 164 (419)
++|++++. |....-++|.
T Consensus 83 ~l~i~~d~---f~rtt~~~h~ 100 (673)
T PRK00133 83 GFGISFDN---YGSTHSEENR 100 (673)
T ss_pred HhCCCCCC---CccCCcHHHH
Confidence 99998873 4444444443
No 68
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=91.84 E-value=0.55 Score=48.85 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=45.4
Q ss_pred CCCCcchhhhHHHHHHH--HHHHhhc--ccE-EEEEeCcceecC-------CCCH-HHHHHHHHHHHHHHHHcCcCCCce
Q 014776 86 QPTGSIHLGNYLGAIKN--WIALQNS--YET-LFFIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNSKA 152 (419)
Q Consensus 86 ~PTG~lHLGnylg~ik~--~~~lQ~~--~~~-~i~IaDlhA~t~-------~~~~-~~i~~~~~~~~a~~lA~GlDp~k~ 152 (419)
-|.|.|||||..+.+.. +.++++. ++| ++.-.|-|..-. ..+| +-+.++...+.+.|.++||+.+
T Consensus 9 Y~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D-- 86 (391)
T PF09334_consen 9 YPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYD-- 86 (391)
T ss_dssp ETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---S--
T ss_pred CCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCc--
Confidence 47899999998765522 3344443 565 455589998753 1355 5667777889999999999987
Q ss_pred EEEEcCCcchhh
Q 014776 153 SVFVQSHVRAHV 164 (419)
Q Consensus 153 ~if~qS~v~~~~ 164 (419)
.|..+.-++|.
T Consensus 87 -~F~rTt~~~h~ 97 (391)
T PF09334_consen 87 -RFIRTTDDRHK 97 (391)
T ss_dssp -EEEETTSHHHH
T ss_pred -ceeCCCCHHHH
Confidence 45555544453
No 69
>PLN02224 methionine-tRNA ligase
Probab=91.23 E-value=1.1 Score=49.52 Aligned_cols=73 Identities=10% Similarity=0.067 Sum_probs=50.5
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEE-EEEeCcceec--C-----CC-CHHHHHHHHHHHHHHHH
Q 014776 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAIT--L-----PY-DTQQLSKATRETAAIYL 143 (419)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~-i~IaDlhA~t--~-----~~-~~~~i~~~~~~~~a~~l 143 (419)
+..|-+++ -|+|.+||||..+.+.. +.++++. ++|+ ++-.|-|..- . .. ..+.+++++..+.+.+.
T Consensus 70 ~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~ 149 (616)
T PLN02224 70 TFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWK 149 (616)
T ss_pred eEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 35666777 78899999998776522 4455554 5664 4447888632 1 12 34677778888888999
Q ss_pred HcCcCCC
Q 014776 144 ACGIDNS 150 (419)
Q Consensus 144 A~GlDp~ 150 (419)
++|++++
T Consensus 150 ~l~I~~D 156 (616)
T PLN02224 150 DLDIAYD 156 (616)
T ss_pred HcCCCCC
Confidence 9999987
No 70
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=91.05 E-value=0.54 Score=48.76 Aligned_cols=56 Identities=20% Similarity=0.144 Sum_probs=42.3
Q ss_pred cccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHH
Q 014776 272 ARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVA 348 (419)
Q Consensus 272 ~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~~~~~~eel~ 348 (419)
+.++++ || .|||||. +++|++++++.+.+.++++.. ....-.|++++++...+|+.
T Consensus 212 pLl~~~-dg-~KmgKS~---~~~i~l~~~~~~~~i~~~d~~----------------D~~~~Ki~k~~t~~~~~ei~ 267 (377)
T TIGR00234 212 PLLTPA-DG-EKMGKSG---GGAVSLDEGKYDFYQFWINTP----------------DEDVKKILKLFTFLGLEEIE 267 (377)
T ss_pred eeecCC-CC-CCccCCC---CCcccCCccHhhhhhhhcCCc----------------HHHHHHHHHHcCCCcHHHHH
Confidence 588888 66 6999996 589999999877777764432 13456778888888888776
No 71
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=90.42 E-value=0.78 Score=49.63 Aligned_cols=73 Identities=22% Similarity=0.352 Sum_probs=47.2
Q ss_pred ceEEEecCCC--CcchhhhHHHH-H--HHHHHHhhc--ccEEEEE-eCcceecC-------CCCH-HHHHHHHHHHHHHH
Q 014776 79 KRIVSGVQPT--GSIHLGNYLGA-I--KNWIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIY 142 (419)
Q Consensus 79 ~~i~tGi~PT--G~lHLGnylg~-i--k~~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~ 142 (419)
..+++.-=|+ |.+||||..+. + .-+.++++. ++|++.. .|.|..-. ..++ +..++++..+.+++
T Consensus 4 ~~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 83 (556)
T PRK12268 4 RILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDF 83 (556)
T ss_pred cEEEecCCCCCCCCccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 3455555566 99999998875 3 123334433 5665444 66664432 1244 55577788899999
Q ss_pred HHcCcCCCc
Q 014776 143 LACGIDNSK 151 (419)
Q Consensus 143 lA~GlDp~k 151 (419)
.++|++++.
T Consensus 84 ~~l~i~~d~ 92 (556)
T PRK12268 84 KKLGISYDL 92 (556)
T ss_pred HHcCCcCCC
Confidence 999999873
No 72
>PLN02610 probable methionyl-tRNA synthetase
Probab=89.64 E-value=0.79 Score=52.06 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=54.0
Q ss_pred CceEEEec-CCCCcchhhhHHHH-H--HHHHHHhhc--ccEEEEE-eCcceecC-------CCCH-HHHHHHHHHHHHHH
Q 014776 78 KKRIVSGV-QPTGSIHLGNYLGA-I--KNWIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIY 142 (419)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~-i--k~~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~ 142 (419)
+..|.|.+ -|+|.+||||..+. + .-+.++++. ++|+|+. .|-|..-. ..++ +.+.++...+...|
T Consensus 18 ~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~ 97 (801)
T PLN02610 18 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVY 97 (801)
T ss_pred CEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34444443 35699999999863 4 235666665 5665444 67787643 1244 55566677788899
Q ss_pred HHcCcCCCceEEEEcCCcchhhHH
Q 014776 143 LACGIDNSKASVFVQSHVRAHVEL 166 (419)
Q Consensus 143 lA~GlDp~k~~if~qS~v~~~~el 166 (419)
.++||+.|. |....-++|.+.
T Consensus 98 ~~l~i~~D~---f~rT~~~~h~~~ 118 (801)
T PLN02610 98 DWFDISFDK---FGRTSTPQQTEI 118 (801)
T ss_pred HHcCCcccc---CccCCCHHHHHH
Confidence 999999873 334444555443
No 73
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=87.71 E-value=1.6 Score=49.59 Aligned_cols=72 Identities=13% Similarity=0.122 Sum_probs=49.0
Q ss_pred CceEEEecCCC--CcchhhhHHHHHHH--HHHHhhc--ccEEEE-EeCcceecC-------CCC-HHHHHHHHHHHHHHH
Q 014776 78 KKRIVSGVQPT--GSIHLGNYLGAIKN--WIALQNS--YETLFF-IVDLHAITL-------PYD-TQQLSKATRETAAIY 142 (419)
Q Consensus 78 ~~~i~tGi~PT--G~lHLGnylg~ik~--~~~lQ~~--~~~~i~-IaDlhA~t~-------~~~-~~~i~~~~~~~~a~~ 142 (419)
+..+++|. |+ |.+|+||.++.+.+ +.++|+. ++|.+. -.|-|.+-. ..+ .+-..+++..+..++
T Consensus 33 ~~~i~~~p-Py~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~ 111 (805)
T PRK00390 33 KYYVLDMF-PYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQL 111 (805)
T ss_pred CEEEEccC-CCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 56777776 76 99999999875522 4556664 566443 366665532 113 466677888899999
Q ss_pred HHcCcCCC
Q 014776 143 LACGIDNS 150 (419)
Q Consensus 143 lA~GlDp~ 150 (419)
.++|+..|
T Consensus 112 ~~lGi~~D 119 (805)
T PRK00390 112 KSLGFSYD 119 (805)
T ss_pred HHhCCccc
Confidence 99999655
No 74
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=86.99 E-value=2.9 Score=48.18 Aligned_cols=70 Identities=29% Similarity=0.355 Sum_probs=40.2
Q ss_pred cccceecccCchHH-HHHHHHHHHHHHhhh--hCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014776 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (419)
Q Consensus 215 ~~adivpvG~DQ~~-h~eLaRdia~r~n~~--~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 291 (419)
|-+|+...|.||.. |+-+.. |++. ++. -+.|..++.. ..|.. +| +|||||.
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~-----~~~~a~~~~-------------~~~Pk~v~~h--G~vl~--~G-~KMSKS~--- 582 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFI-----FNHVAIFPE-------------EKWPRGIVVN--GFVLL--EG-KKMSKSK--- 582 (897)
T ss_pred CCceEEEeeeccCccHHHHHH-----HHHHHhcCC-------------CccCcEEEEc--ceEEE--CC-ccccCcC---
Confidence 45799999999976 555542 3322 221 1334444432 24432 56 7999997
Q ss_pred CCceecCC-----CHHHHHHHhhh
Q 014776 292 QSRINLLD-----PKDVIANKIKR 310 (419)
Q Consensus 292 ~s~I~L~D-----spe~I~~KI~k 310 (419)
+|.|.+.| .+|.++=-+..
T Consensus 583 GNvVdp~eii~~yGaDalRl~L~~ 606 (897)
T PRK12300 583 GNVIPLRKAIEEYGADVVRLYLTS 606 (897)
T ss_pred CCCCCHHHHHHHcChHHHHHHHHh
Confidence 68887654 34455544444
No 75
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=84.68 E-value=2.5 Score=45.02 Aligned_cols=66 Identities=15% Similarity=0.273 Sum_probs=41.5
Q ss_pred CCCCcchhhhHHHHHH--HHHHHhhc--ccEEE-EEeCcceecC-------CCCH-HHHHHHHHHHHHHHHHcCcCCCc
Q 014776 86 QPTGSIHLGNYLGAIK--NWIALQNS--YETLF-FIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNSK 151 (419)
Q Consensus 86 ~PTG~lHLGnylg~ik--~~~~lQ~~--~~~~i-~IaDlhA~t~-------~~~~-~~i~~~~~~~~a~~lA~GlDp~k 151 (419)
-|+|.+||||..+.+. -+.+.++. ++|.+ +-.|.|..-. ..++ +..+.+...+.+++.++|++++.
T Consensus 11 ~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D~ 89 (511)
T PRK11893 11 YPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYDD 89 (511)
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 3569999999766542 13444443 56644 3466664311 1234 55566667888899999998773
No 76
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=84.54 E-value=4.3 Score=46.50 Aligned_cols=73 Identities=21% Similarity=0.325 Sum_probs=39.8
Q ss_pred cccceecccCchHH-HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCC
Q 014776 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (419)
Q Consensus 215 ~~adivpvG~DQ~~-h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 293 (419)
+-+|+...|.||.. ++-.....+--+ +| ...|..++.. .+|... +| +|||||. +|
T Consensus 563 ~P~d~~i~G~Di~r~Wf~~~~~~~~~~---~~--------------~~P~k~v~~h--G~vl~~-~G-~KMSKSk---GN 618 (861)
T TIGR00392 563 FPADFILEGSDQTRGWFYSSLAIGTAL---FG--------------QAPYKNVITH--GFTLDE-KG-RKMSKSL---GN 618 (861)
T ss_pred CCceEEEEecchhccHHHHHHHHHHHH---cC--------------CCChHhhEec--ceEECC-CC-CCcCCCC---CC
Confidence 34799999999965 222222222111 12 1223333322 255443 55 6999997 68
Q ss_pred ceecCC-----CHHHHHHHhhhc
Q 014776 294 RINLLD-----PKDVIANKIKRC 311 (419)
Q Consensus 294 ~I~L~D-----spe~I~~KI~kA 311 (419)
.|...| .++.++=-+.++
T Consensus 619 vI~p~d~i~~yGaDalR~~ll~~ 641 (861)
T TIGR00392 619 VVDPLKVINKYGADILRLYVASS 641 (861)
T ss_pred CCCHHHHHHHcCHHHHHHHHHhC
Confidence 887655 455555555554
No 77
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=84.17 E-value=2.1 Score=43.08 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=41.4
Q ss_pred CCCcchhhhHHHHHHH--HHHHhhc--ccEEE-EEeCcceecC-------CCCH-HHHHHHHHHHHHHHHHcCcCCCc
Q 014776 87 PTGSIHLGNYLGAIKN--WIALQNS--YETLF-FIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNSK 151 (419)
Q Consensus 87 PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i-~IaDlhA~t~-------~~~~-~~i~~~~~~~~a~~lA~GlDp~k 151 (419)
|+|.+||||..+.+.. +.++++. ++|++ +-.|.|..-. ..++ +-.+.+...+.+++.++|++++.
T Consensus 11 ~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 88 (319)
T cd00814 11 VNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFDY 88 (319)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 4599999999885522 3344443 56643 3467775432 1245 44455666788899999998874
No 78
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=82.81 E-value=1.1 Score=45.50 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=22.9
Q ss_pred CCCcchhhhHHHHHHH--HHHHhhc--ccEE-EEEeCccee
Q 014776 87 PTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAI 122 (419)
Q Consensus 87 PTG~lHLGnylg~ik~--~~~lQ~~--~~~~-i~IaDlhA~ 122 (419)
|+|.+||||..+.+.. +.++++. ++|+ +.-.|-|.+
T Consensus 12 vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~ 52 (338)
T cd00818 12 ANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGL 52 (338)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCc
Confidence 5699999999875522 4444443 5664 444676655
No 79
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=82.77 E-value=2.2 Score=48.47 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=53.1
Q ss_pred CCceEEEec-CCCCcchhhhHHHHH--HHHHHHhhc--ccEEEEEeCcceecCC---------CCH-HHHHHHHHHHHHH
Q 014776 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQNS--YETLFFIVDLHAITLP---------YDT-QQLSKATRETAAI 141 (419)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGnylg~i--k~~~~lQ~~--~~~~i~IaDlhA~t~~---------~~~-~~i~~~~~~~~a~ 141 (419)
.++.|..-+ -|||.+|+||..+.. .-+.++++. ++|.+-++ |||+=.| .+| .-...|+.++..+
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG-wdafGlPae~~A~~~~~~P~~wt~~ni~~~k~q 112 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMG-WDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQ 112 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCc-ccccCchHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 356666555 589999999965422 123444443 67776665 8887544 244 5567888899999
Q ss_pred HHHcCcCCCceEEEEcCC
Q 014776 142 YLACGIDNSKASVFVQSH 159 (419)
Q Consensus 142 ~lA~GlDp~k~~if~qS~ 159 (419)
+.++|+.-|=..=|.-.|
T Consensus 113 lk~lG~siDW~Ref~T~D 130 (814)
T COG0495 113 LKSLGFSIDWRREFATCD 130 (814)
T ss_pred HHHhCCccccccceecCC
Confidence 999998765444443333
No 80
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=82.52 E-value=0.9 Score=52.35 Aligned_cols=59 Identities=25% Similarity=0.232 Sum_probs=35.6
Q ss_pred hcccceecccCchH---HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCC
Q 014776 214 LYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS 290 (419)
Q Consensus 214 ~~~adivpvG~DQ~---~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~ 290 (419)
.+-+|+...|.||. .|-.+-..++- .| ...|..++.. .++... +| +|||||.
T Consensus 543 ~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-----~g--------------~~P~k~vl~H--G~vld~-~G-~KMSKSl-- 597 (912)
T PRK05743 543 GYPADLYLEGSDQHRGWFQSSLLTSVAT-----RG--------------KAPYKQVLTH--GFTVDG-KG-RKMSKSL-- 597 (912)
T ss_pred CCCceEEEecccccchHHHHHHHHHHHh-----cC--------------CCccceeEEe--eeEECC-CC-CCCCCCC--
Confidence 45689999999997 34444444432 22 1233344432 355554 56 7999997
Q ss_pred CCCceecC
Q 014776 291 DQSRINLL 298 (419)
Q Consensus 291 ~~s~I~L~ 298 (419)
+|.|...
T Consensus 598 -GNvIdP~ 604 (912)
T PRK05743 598 -GNVIDPQ 604 (912)
T ss_pred -CCcCCHH
Confidence 6777543
No 81
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=82.48 E-value=3 Score=46.22 Aligned_cols=64 Identities=14% Similarity=0.249 Sum_probs=42.4
Q ss_pred CCCcchhhhHHHHHHH--HHHHhhc--ccE-EEEEeCcceecC-------CCCH-HHHHHHHHHHHHHHHHcCcCCC
Q 014776 87 PTGSIHLGNYLGAIKN--WIALQNS--YET-LFFIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNS 150 (419)
Q Consensus 87 PTG~lHLGnylg~ik~--~~~lQ~~--~~~-~i~IaDlhA~t~-------~~~~-~~i~~~~~~~~a~~lA~GlDp~ 150 (419)
|+|.+||||..+.+.. +.++++. ++| +++-.|.|..-. ..++ +-+..+...+..++.++|++++
T Consensus 15 ~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~D 91 (648)
T PRK12267 15 PNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISYD 91 (648)
T ss_pred CCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 5599999998765522 4445443 566 455578776532 1244 4556666778889999999877
No 82
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=82.26 E-value=0.87 Score=47.12 Aligned_cols=36 Identities=28% Similarity=0.308 Sum_probs=23.3
Q ss_pred CCCcchhhhHHHHHHH--HHHHhhc--ccEE-EEEeCccee
Q 014776 87 PTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAI 122 (419)
Q Consensus 87 PTG~lHLGnylg~ik~--~~~lQ~~--~~~~-i~IaDlhA~ 122 (419)
|+|.+||||..+.+.. +.++++. ++|+ +.-.|-|.+
T Consensus 12 ~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~hG~ 52 (382)
T cd00817 12 VTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHAGI 52 (382)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCCCC
Confidence 6799999998876522 4555554 5664 444677743
No 83
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=82.03 E-value=8 Score=42.86 Aligned_cols=70 Identities=19% Similarity=0.240 Sum_probs=39.9
Q ss_pred ccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCce
Q 014776 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (419)
Q Consensus 216 ~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 295 (419)
.+|+.+.|.||..++-+-= .-+-.-.| ++.|..++.. ..+. + +| +|||||. +|.|
T Consensus 254 p~~~~~~GkDii~fH~i~w---pa~l~~~~--------------~~~p~~v~~h--g~l~-~-eg-~KMSKS~---GN~i 308 (648)
T PRK12267 254 PADVHLVGKDILRFHAIYW---PIMLMALG--------------LPLPKKVFAH--GWWL-M-KD-GKMSKSK---GNVV 308 (648)
T ss_pred ccceEEEeeeecchhHHHH---HHHHHhCC--------------CCCCcEEEec--ceEE-E-CC-ceecccC---Cccc
Confidence 3688999999988554310 00100012 5667665543 1332 2 45 7999997 6888
Q ss_pred ecCC-----CHHHHHHHhhh
Q 014776 296 NLLD-----PKDVIANKIKR 310 (419)
Q Consensus 296 ~L~D-----spe~I~~KI~k 310 (419)
+..| ++|.++=-+.+
T Consensus 309 ~p~d~l~~ygaD~lR~~L~~ 328 (648)
T PRK12267 309 DPEELVDRYGLDALRYYLLR 328 (648)
T ss_pred CHHHHHHHcCCcHHHHHHHh
Confidence 7654 45555554443
No 84
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=81.40 E-value=8 Score=45.07 Aligned_cols=62 Identities=26% Similarity=0.372 Sum_probs=32.9
Q ss_pred cccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCc
Q 014776 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (419)
Q Consensus 215 ~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 294 (419)
+-+|+...|.||.... +.+-++...- .+|. ..+..++.. ..+... +| +|||||. +|.
T Consensus 544 ~Pad~~~~G~Di~r~W-f~~l~~~~~~-~~~~--------------~pfk~v~~h--G~Vld~-~G-~KMSKSl---GNv 600 (975)
T PRK06039 544 FPADFIVEGIDQTRGW-FYTLLALSTA-LFDR--------------PPYKNVLVH--GHVLDE-DG-QKMSKSL---GNY 600 (975)
T ss_pred CCceEEEechhhHhhH-HHHHHHHHHH-hcCC--------------CcccEEEEe--eeEECC-CC-CCcCCCC---CCc
Confidence 4589999999997532 2222221110 1221 111223322 255443 56 6999997 688
Q ss_pred eecCC
Q 014776 295 INLLD 299 (419)
Q Consensus 295 I~L~D 299 (419)
|...|
T Consensus 601 IdP~d 605 (975)
T PRK06039 601 VDPFE 605 (975)
T ss_pred CCHHH
Confidence 86544
No 85
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=81.29 E-value=2.8 Score=45.03 Aligned_cols=65 Identities=22% Similarity=0.293 Sum_probs=40.6
Q ss_pred CCCcchhhhHHHHHHH--HHHHhhc--ccEEEEE-eCcceecC-------CCCH-HHHHHHHHHHHHHHHHcCcCCCc
Q 014776 87 PTGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNSK 151 (419)
Q Consensus 87 PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~lA~GlDp~k 151 (419)
|+|.+||||....+.. +.++++. ++|.+.. .|.|..-. ..++ +-.+.+...+.+++.++|++++.
T Consensus 10 ~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 87 (530)
T TIGR00398 10 ANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFDR 87 (530)
T ss_pred CCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 7899999998765521 3344443 5665444 55554321 1244 44455667788899999998753
No 86
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=80.13 E-value=9.6 Score=43.45 Aligned_cols=76 Identities=21% Similarity=0.114 Sum_probs=42.4
Q ss_pred ccceecccCchHHHHHHHHHHHHHHhhh--hCCccccccCCCCCccccCCce-ecCCCCcccccCCCCCCccccCCCCCC
Q 014776 216 QSDFVPVGEDQKQHLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEP-LIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (419)
Q Consensus 216 ~adivpvG~DQ~~h~eLaRdia~r~n~~--~g~~~~~k~g~~~~~~f~~P~~-l~~~~~~~l~sL~dg~~KMSKS~p~~~ 292 (419)
=.|+-.+|.|....+-|- -||+++ |....|+ ..+|.. |++. .+|.+- +| .|||||. +
T Consensus 526 PVD~yigG~ehavlHLly----~rF~Hkal~d~g~~p---------~~epf~~L~~q--GmVl~~-~g-~KMSKSK---g 585 (814)
T COG0495 526 PVDLYIGGIEHAVLHLLY----FRFFHKALFDEGLVP---------KDEPFKKLITQ--GMVLGE-EG-EKMSKSK---G 585 (814)
T ss_pred ChheeecchhHHHHHHHH----HHHHHHHhcccCcCC---------Cccchhhhhcc--ceEEec-CC-Ccccccc---C
Confidence 489999999998755432 234443 2211111 122221 4443 366554 45 5999997 6
Q ss_pred CceecCC-----CHHHHHHHhhhc
Q 014776 293 SRINLLD-----PKDVIANKIKRC 311 (419)
Q Consensus 293 s~I~L~D-----spe~I~~KI~kA 311 (419)
|.|.+.| .++.++=-+|-+
T Consensus 586 N~v~p~~~i~~yGADt~Rl~~m~~ 609 (814)
T COG0495 586 NVVDPEEAVEKYGADTVRLYIMFA 609 (814)
T ss_pred CCCCHHHHHHHhCchHHHHHHHhh
Confidence 7887665 345555555544
No 87
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=79.48 E-value=3.6 Score=47.06 Aligned_cols=72 Identities=14% Similarity=0.148 Sum_probs=46.2
Q ss_pred ceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEEEEE-eCcceecC-------CC-CHHHHHHHHHHHHHHHHH
Q 014776 79 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAITL-------PY-DTQQLSKATRETAAIYLA 144 (419)
Q Consensus 79 ~~i~tGi-~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i~I-aDlhA~t~-------~~-~~~~i~~~~~~~~a~~lA 144 (419)
..+++|+ -|||.+|+||.++.+.. +.++++. ++|++.. -|-|.+-. .. ..+...+++..+..++.+
T Consensus 31 ~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 110 (842)
T TIGR00396 31 YYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQA 110 (842)
T ss_pred EEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4555552 24599999998875522 4556654 5765544 45565421 11 346667788889999999
Q ss_pred cCcCCC
Q 014776 145 CGIDNS 150 (419)
Q Consensus 145 ~GlDp~ 150 (419)
+|+..+
T Consensus 111 lG~~~D 116 (842)
T TIGR00396 111 LGFSYD 116 (842)
T ss_pred hCCccc
Confidence 997554
No 88
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=79.36 E-value=1.5 Score=51.23 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=44.8
Q ss_pred cccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCC
Q 014776 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (419)
Q Consensus 215 ~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 293 (419)
+-+|+...|.||. ++=++|-++.-+.. .| ..| ..++.. .+|..- +| +|||||. ||
T Consensus 490 ~P~d~~~~G~Dii-~~W~a~~l~~~~~~-~~---------------~~Pfk~V~~h--G~v~d~-~G-~KMSKSk---GN 545 (1052)
T PRK14900 490 YPTSVMETGHDII-FFWVARMMMMGLHF-MG---------------EVPFRTVYLH--PMVRDE-KG-QKMSKTK---GN 545 (1052)
T ss_pred CCchhhcccccHH-hHHHHHHHHHHHHh-cC---------------CCccceeEec--ccEECC-CC-CCccCCC---CC
Confidence 4579999999998 45667777665542 12 235 333332 255443 45 7999997 68
Q ss_pred ceecCC-----CHHHHHHHhhh
Q 014776 294 RINLLD-----PKDVIANKIKR 310 (419)
Q Consensus 294 ~I~L~D-----spe~I~~KI~k 310 (419)
.|...| .+|.++=-+..
T Consensus 546 vIdP~dvIe~yGaDalR~~L~~ 567 (1052)
T PRK14900 546 VIDPLVITEQYGADALRFTLAA 567 (1052)
T ss_pred CCCHHHHHHHhCcHHHHHHHHh
Confidence 887665 45555555544
No 89
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=78.91 E-value=2.4 Score=43.85 Aligned_cols=60 Identities=28% Similarity=0.334 Sum_probs=33.3
Q ss_pred ccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCCc
Q 014776 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (419)
Q Consensus 216 ~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 294 (419)
.+|+...|.||...+-.. .++.-.- ..| ..| ..++.- ..+.++ +| +|||||. +|.
T Consensus 296 p~d~~~~G~D~~~~h~~~-~l~~~~~-~~g---------------~~p~~~v~~h--g~v~~~-~g-~KMSKS~---Gn~ 351 (382)
T cd00817 296 PTSLLVTGHDIIFFWVAR-MIMRGLK-LTG---------------KLPFKEVYLH--GLVRDE-DG-RKMSKSL---GNV 351 (382)
T ss_pred CCCeeeeecCcCchHHHH-HHHHHHH-hhC---------------CCchHHeEee--eeEECC-CC-CCccccC---CCC
Confidence 479999999997654333 3332221 112 123 222211 255555 55 6999997 678
Q ss_pred eecCC
Q 014776 295 INLLD 299 (419)
Q Consensus 295 I~L~D 299 (419)
|.+.|
T Consensus 352 v~~~d 356 (382)
T cd00817 352 IDPLD 356 (382)
T ss_pred CCHHH
Confidence 87643
No 90
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=78.80 E-value=5.8 Score=42.90 Aligned_cols=73 Identities=21% Similarity=0.337 Sum_probs=44.4
Q ss_pred eEEEec--CCCCcchhhhHHHHHHHHHHHhhccc-EEEEEeCcceecCCC-CHHHHHHHHHHHHHHHHHcCcCCCceEEE
Q 014776 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVF 155 (419)
Q Consensus 80 ~i~tGi--~PTG~lHLGnylg~ik~~~~lQ~~~~-~~i~IaDlhA~t~~~-~~~~i~~~~~~~~a~~lA~GlDp~k~~if 155 (419)
.|++-| +|||.+||||.--++-+|- +|.+++ -+|.-=|. |+|. +-++.+.. +..++--+||.|+++ =
T Consensus 200 kVv~RFPPEpSGyLHIGHAKAALLNqY-fa~~~~G~LIvRFDD---TNPaKE~~eFe~~---IleDl~~LgIkpd~~--T 270 (712)
T KOG1147|consen 200 KVVTRFPPEPSGYLHIGHAKAALLNQY-FAQAYQGKLIVRFDD---TNPAKENEEFEDV---ILEDLSLLGIKPDRV--T 270 (712)
T ss_pred ceEEecCCCCCceeehhhHHHHHHHHH-HHHhcCceEEEEecC---CCcchhhHHHHHH---HHHHHHHhCcCccee--e
Confidence 455544 7789999999988876663 555543 23333333 3443 44555544 445555679999964 4
Q ss_pred EcCCcc
Q 014776 156 VQSHVR 161 (419)
Q Consensus 156 ~qS~v~ 161 (419)
.-|++.
T Consensus 271 yTSDyF 276 (712)
T KOG1147|consen 271 YTSDYF 276 (712)
T ss_pred echhhH
Confidence 566653
No 91
>PLN02563 aminoacyl-tRNA ligase
Probab=78.74 E-value=10 Score=44.10 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=45.7
Q ss_pred ceEEEec-CCCCc-chhhhHHHHHHH--HHHHhhc--ccEEEEE-eCcceecC-------CCC-HHHHHHHHHHHHHHHH
Q 014776 79 KRIVSGV-QPTGS-IHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAITL-------PYD-TQQLSKATRETAAIYL 143 (419)
Q Consensus 79 ~~i~tGi-~PTG~-lHLGnylg~ik~--~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~-~~~i~~~~~~~~a~~l 143 (419)
+.+++|+ -|+|. +|+||..+.+.. +.++++. ++|++.. -|-|.+-. ... -+...+++..+.+++.
T Consensus 112 ~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~~ 191 (963)
T PLN02563 112 FYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQLK 191 (963)
T ss_pred EEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHHH
Confidence 5666675 45697 999998775422 4556654 5665444 45565531 112 2456678888999999
Q ss_pred HcCcCCC
Q 014776 144 ACGIDNS 150 (419)
Q Consensus 144 A~GlDp~ 150 (419)
.+|+..|
T Consensus 192 ~lG~s~D 198 (963)
T PLN02563 192 SLGFSYD 198 (963)
T ss_pred HhCcEee
Confidence 9996433
No 92
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=78.61 E-value=1.2 Score=47.55 Aligned_cols=70 Identities=26% Similarity=0.297 Sum_probs=40.8
Q ss_pred ccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCce
Q 014776 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (419)
Q Consensus 216 ~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 295 (419)
..|+...|.||...+-.. .+|.-+. .| .+.|..++.. .++. + +| +|||||. +|.|
T Consensus 254 ~~D~~~~G~D~~~~h~~~-~~a~~~a--~~--------------~~~p~~~~~~--g~v~-~-~G-~KMSKS~---GN~i 308 (511)
T PRK11893 254 PADVHLIGKDILRFHAVY-WPAFLMA--AG--------------LPLPKRVFAH--GFLT-L-DG-EKMSKSL---GNVI 308 (511)
T ss_pred CCcceEecccccccchhH-HHHHHHh--CC--------------CCCCCEEEee--ccEE-E-CC-eeecccC---CcEE
Confidence 478999999998853222 2222211 12 2456555543 2443 4 66 6999997 6888
Q ss_pred ecCC-----CHHHHHHHhhh
Q 014776 296 NLLD-----PKDVIANKIKR 310 (419)
Q Consensus 296 ~L~D-----spe~I~~KI~k 310 (419)
.+.| +++.++=-+.+
T Consensus 309 ~~~dll~~~g~DalR~~ll~ 328 (511)
T PRK11893 309 DPFDLVDEYGVDAVRYFLLR 328 (511)
T ss_pred cHHHHHHHcCcHHHHHHHHh
Confidence 8755 45555544443
No 93
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=78.53 E-value=1.8 Score=47.12 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=46.3
Q ss_pred HHHhhhhc------cc--ceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCce-ecCCCCcccccCC
Q 014776 208 MASDILLY------QS--DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEP-LIPPAGARVMSLT 278 (419)
Q Consensus 208 QaADil~~------~a--divpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~-l~~~~~~~l~sL~ 278 (419)
.+.||-+. ++ -+-.+|.||..|+.-...++..++ ++.|.- .+.. -++-
T Consensus 312 ~t~DiA~~~~k~~~~~d~iI~V~g~~q~~h~~~v~~~l~~lG------------------~~~~~~l~h~~-----~~~V 368 (566)
T TIGR00456 312 LTRDIAYHLDKLERGFDKMIYVWGSDHHLHIAQFFAILEKLG------------------FYKKKELIHLN-----FGMV 368 (566)
T ss_pred chhhHHHHHHHHhcCCCEEEEEecCcHHHHHHHHHHHHHHcC------------------CCCCCceEEEE-----EEEE
Confidence 45666553 23 356799999999999999998865 233422 2211 1222
Q ss_pred CCCCccccCCCCCCCceecCCCHHHHHH
Q 014776 279 DGLSKMSKSAPSDQSRINLLDPKDVIAN 306 (419)
Q Consensus 279 dg~~KMSKS~p~~~s~I~L~Dspe~I~~ 306 (419)
.+ .|||||. ++.|.+.|=.++..+
T Consensus 369 ~~-~kmSkr~---Gn~V~~~dll~~~~~ 392 (566)
T TIGR00456 369 PL-GSMKTRR---GNVISLDNLLDEASK 392 (566)
T ss_pred EC-CCCCccC---CceeeHHHHHHHHHH
Confidence 23 4999997 789999865555444
No 94
>PLN02882 aminoacyl-tRNA ligase
Probab=77.10 E-value=12 Score=44.33 Aligned_cols=76 Identities=26% Similarity=0.357 Sum_probs=40.9
Q ss_pred cchhhhhhHHHHHhhh--hcccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccc
Q 014776 198 GVALLTYPVLMASDIL--LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVM 275 (419)
Q Consensus 198 ~~g~l~YPvLQaADil--~~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~ 275 (419)
+++.+-||- ..-+.+ .+-+|+..-|.||.... +.+-++...- .+|. +.|..++.. ..+.
T Consensus 548 p~a~~~~p~-e~~~~f~~~~PaD~i~eG~Dq~RgW-f~~ll~~s~~-l~~~--------------~pfk~Vivh--G~vl 608 (1159)
T PLN02882 548 PYAYIHYPF-ENKELFEKNFPADFVAEGLDQTRGW-FYTLMVLSTA-LFDK--------------PAFKNLICN--GLVL 608 (1159)
T ss_pred HHHHcCCcc-cChhHhhccCCceEEEEecchhhhH-HHHHHHHHHH-hcCC--------------CCcceeEEc--cEEE
Confidence 455555662 112211 24599999999999864 4444443322 1331 223333322 2333
Q ss_pred cCCCCCCccccCCCCCCCceec
Q 014776 276 SLTDGLSKMSKSAPSDQSRINL 297 (419)
Q Consensus 276 sL~dg~~KMSKS~p~~~s~I~L 297 (419)
.= +| +|||||. +|.|..
T Consensus 609 de-~G-~KMSKSl---GNvIdP 625 (1159)
T PLN02882 609 AE-DG-KKMSKSL---KNYPDP 625 (1159)
T ss_pred CC-CC-CCcccCC---CCCCCH
Confidence 21 45 7999997 677754
No 95
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=76.61 E-value=1.4 Score=50.93 Aligned_cols=71 Identities=27% Similarity=0.313 Sum_probs=41.8
Q ss_pred cccceecccCchHH-HHHHHHHHHHHHhhh--hCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014776 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (419)
Q Consensus 215 ~~adivpvG~DQ~~-h~eLaRdia~r~n~~--~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 291 (419)
|-+|+...|.||.+ |+.+.. |++. ++. . +-|..++.. ..|.. +| +|||||.
T Consensus 572 yP~D~~~~GkDii~~H~~~~i-----~~~~a~~~~-----------~--~~Pk~i~~~--G~vl~--~G-~KMSKSl--- 625 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFYI-----FHHVAIFPE-----------K--FWPRGIVVN--GYVML--EG-KKMSKSK--- 625 (938)
T ss_pred CCceEEEEeeccccchHHHHH-----HHHHHcCCc-----------c--ccCcEEEEe--ceEEe--CC-ccccCcC---
Confidence 45799999999976 555442 2221 111 0 124443332 23332 56 7999997
Q ss_pred CCceecCC-----CHHHHHHHhhhc
Q 014776 292 QSRINLLD-----PKDVIANKIKRC 311 (419)
Q Consensus 292 ~s~I~L~D-----spe~I~~KI~kA 311 (419)
+|.|.+.| .++.++=-+..+
T Consensus 626 GNvI~p~d~i~~yGaDalRl~Ll~~ 650 (938)
T TIGR00395 626 GNVLTLEQAVEKFGADVARLYIADA 650 (938)
T ss_pred CCCCCHHHHHHHcChHHHHHHHHhc
Confidence 68887765 466666666654
No 96
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=76.20 E-value=5.8 Score=40.37 Aligned_cols=58 Identities=31% Similarity=0.350 Sum_probs=32.1
Q ss_pred ccceecccCchHH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCC
Q 014776 216 QSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (419)
Q Consensus 216 ~adivpvG~DQ~~---h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 292 (419)
.+|+.+.|.||.. |..+..-++ .+| ...|..+... ..+... +| +|||||. +
T Consensus 252 p~d~~~~GkDii~~wf~~~~~~~~~-----~~~--------------~~p~~~~~~h--g~~~~~-~g-~KmSKS~---g 305 (338)
T cd00818 252 PADFILEGSDQTRGWFYSLLLLSTA-----LFG--------------KAPYKNVIVH--GFVLDE-DG-RKMSKSL---G 305 (338)
T ss_pred CCeEEeecchHHhHHHHHHHHHHHH-----hcC--------------CCccceEEEE--eeEECC-CC-CCCCCCC---C
Confidence 4688999999975 333322221 122 1122333322 244333 56 6999997 6
Q ss_pred CceecCC
Q 014776 293 SRINLLD 299 (419)
Q Consensus 293 s~I~L~D 299 (419)
|.|.+.|
T Consensus 306 n~i~~~~ 312 (338)
T cd00818 306 NYVDPQE 312 (338)
T ss_pred CcCCHHH
Confidence 8887743
No 97
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=73.73 E-value=19 Score=38.77 Aligned_cols=73 Identities=15% Similarity=0.097 Sum_probs=44.3
Q ss_pred CceEE-EecCCCCcchhhhHHHHH--HHHHHHhhc--ccEEEE--EeCcceecC----------------CCCH-HHHHH
Q 014776 78 KKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLFF--IVDLHAITL----------------PYDT-QQLSK 133 (419)
Q Consensus 78 ~~~i~-tGi~PTG~lHLGnylg~i--k~~~~lQ~~--~~~~i~--IaDlhA~t~----------------~~~~-~~i~~ 133 (419)
..++| .|.-+-+.+||||....+ .-+.++++. ++|+++ |+|+--+|. ..++ +..+.
T Consensus 23 ~v~mYvCGpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~a~~ 102 (490)
T PRK14536 23 HVRLYGCGPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEIAAH 102 (490)
T ss_pred ceEEEeeCCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHHHHH
Confidence 45555 576666999999987754 223344333 577665 466611111 1234 44455
Q ss_pred HHHHHHHHHHHcCcCCC
Q 014776 134 ATRETAAIYLACGIDNS 150 (419)
Q Consensus 134 ~~~~~~a~~lA~GlDp~ 150 (419)
++..+.+++.++|+.+.
T Consensus 103 ~~~~f~~d~~~Lni~~~ 119 (490)
T PRK14536 103 YTAAFFRDTARLNIERP 119 (490)
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 66678888899998754
No 98
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=73.09 E-value=3.1 Score=43.32 Aligned_cols=71 Identities=11% Similarity=0.005 Sum_probs=41.9
Q ss_pred ceEE-EecCCCCcchhhhHHHHH--HHHHHHhhc--ccEEEEE-eCccee--cC-----CCCH-HHHHHHHHHHHHHHHH
Q 014776 79 KRIV-SGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLFFI-VDLHAI--TL-----PYDT-QQLSKATRETAAIYLA 144 (419)
Q Consensus 79 ~~i~-tGi~PTG~lHLGnylg~i--k~~~~lQ~~--~~~~i~I-aDlhA~--t~-----~~~~-~~i~~~~~~~~a~~lA 144 (419)
.++| +|--|=+.+||||..+.+ .-+.++++. ++|.++. .|.|.- +. ..++ +..+.+...+..++.+
T Consensus 10 v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~~ 89 (384)
T PRK12418 10 ATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDMEA 89 (384)
T ss_pred eEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3444 566666999999987755 224444443 5665443 444421 11 1245 4455666778888899
Q ss_pred cCc-CC
Q 014776 145 CGI-DN 149 (419)
Q Consensus 145 ~Gl-Dp 149 (419)
+|+ .|
T Consensus 90 Lni~~~ 95 (384)
T PRK12418 90 LRVLPP 95 (384)
T ss_pred hCCCCC
Confidence 996 45
No 99
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=72.99 E-value=22 Score=39.60 Aligned_cols=81 Identities=27% Similarity=0.204 Sum_probs=48.8
Q ss_pred hHHHHHhhhhcccceecccCch-HHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014776 205 PVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (419)
Q Consensus 205 PvLQaADil~~~adivpvG~DQ-~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~K 283 (419)
...|+.|||-...||--+|.|- -||++- ++|+.-- .+|.. .+ .-..++.. .| .+ +| .|
T Consensus 257 Csam~~~~lg~~~DIh~gG~DL~FPHHeN--EiAQseA-~~~~~-----------~~-v~y~~H~G---~L-~i-~G-~K 315 (651)
T PTZ00399 257 CSAMASNILGDPIDIHSGGIDLKFPHHDN--ELAQSEA-YFDKH-----------QW-VNYFLHSG---HL-HI-KG-LK 315 (651)
T ss_pred HHHHHHHHcCCcceeeccCCCCCCCcchh--HHHHHHH-hhCCC-----------CC-CcEEEEEE---EE-Ee-cc-ch
Confidence 3589999999999999999998 467543 3333311 13321 01 01122322 22 23 55 69
Q ss_pred cccCCCCCCCceecCC-----CHHHHHHHhh
Q 014776 284 MSKSAPSDQSRINLLD-----PKDVIANKIK 309 (419)
Q Consensus 284 MSKS~p~~~s~I~L~D-----spe~I~~KI~ 309 (419)
||||. +|.|.+.| +++.++=-+.
T Consensus 316 MSKSL---GNfItp~dlLekygaDaLR~~lL 343 (651)
T PTZ00399 316 MSKSL---KNFITIRQALSKYTARQIRLLFL 343 (651)
T ss_pred hhhcC---CCcccHHHHHHHcChHHHHHHHH
Confidence 99997 68888765 5666665554
No 100
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=72.83 E-value=12 Score=39.58 Aligned_cols=65 Identities=14% Similarity=0.258 Sum_probs=47.7
Q ss_pred CCCCcchhhhHHHHH--HHHHHHhhc-ccEEEEE--eCcceecC-------C-CCHHHHHHHHHHHHHHHHHcCcCCC
Q 014776 86 QPTGSIHLGNYLGAI--KNWIALQNS-YETLFFI--VDLHAITL-------P-YDTQQLSKATRETAAIYLACGIDNS 150 (419)
Q Consensus 86 ~PTG~lHLGnylg~i--k~~~~lQ~~-~~~~i~I--aDlhA~t~-------~-~~~~~i~~~~~~~~a~~lA~GlDp~ 150 (419)
-+-..|||||....+ ....++|.- ++.+|+. .|-|.+-. . .+++.+..+...+...|++.|+.-.
T Consensus 49 YvNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt 126 (578)
T KOG0436|consen 49 YVNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYT 126 (578)
T ss_pred ecCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchh
Confidence 356779999976655 346677876 6666666 78888742 1 2567788888899999999999754
No 101
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=72.64 E-value=2.5 Score=48.53 Aligned_cols=72 Identities=25% Similarity=0.314 Sum_probs=42.9
Q ss_pred cccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCC
Q 014776 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (419)
Q Consensus 215 ~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 293 (419)
|-+|+...|.||... =++|-++..+.. .| ..| ..++.. .+|-.. +| +|||||. ||
T Consensus 472 ~P~d~~~~G~Dii~~-W~a~~~~~~~~~-~~---------------~~Pfk~v~~h--G~v~d~-~G-~KMSKSl---GN 527 (874)
T PRK05729 472 YPTSVLVTGFDIIFF-WVARMIMMGLHF-TG---------------QVPFKDVYIH--GLVRDE-QG-RKMSKSK---GN 527 (874)
T ss_pred CCcccccccccccch-HHHHHHHHHHHh-cC---------------CCchhheEEe--eeEECC-CC-CCcccCC---CC
Confidence 467999999999874 566666554321 11 345 222222 355554 56 6999997 68
Q ss_pred ceecCC-----CHHHHHHHhhh
Q 014776 294 RINLLD-----PKDVIANKIKR 310 (419)
Q Consensus 294 ~I~L~D-----spe~I~~KI~k 310 (419)
.|...| .++.++=-+..
T Consensus 528 vIdP~dvi~~yGaDalR~~ll~ 549 (874)
T PRK05729 528 VIDPLDLIDKYGADALRFTLAA 549 (874)
T ss_pred CCCHHHHHHHhChHHHHHHHHh
Confidence 887654 34444444443
No 102
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=71.84 E-value=2.7 Score=46.18 Aligned_cols=59 Identities=29% Similarity=0.359 Sum_probs=30.4
Q ss_pred cccceecccCchHHHH-HHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCC
Q 014776 215 YQSDFVPVGEDQKQHL-ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (419)
Q Consensus 215 ~~adivpvG~DQ~~h~-eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 293 (419)
|-+|+..-|.||.... ....-+...+ ++. ..| +..+.. .+|... +| +|||||. +|
T Consensus 513 ~P~D~~~~G~D~~~~W~~~~l~~~~~l---~~~-----------~pf--k~v~~h---G~vld~-~G-~KMSKS~---GN 568 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGWFQSSLFLSVAL---FGK-----------EPF--KKVITH---GFVLDE-DG-RKMSKSK---GN 568 (601)
T ss_dssp SSBSEEEEEGGGTTTHHHHHHHHHHHH---SSS-----------TSB--SEEEEE-----EEET-TS-SB-BTTT---TB
T ss_pred CCcccccCCccchhhHHHHhHhhcccc---ccC-----------Cch--heeeec---cccccc-ce-eecccCC---Cc
Confidence 4589999999997654 2222222222 232 112 233333 266554 56 7999997 67
Q ss_pred ceec
Q 014776 294 RINL 297 (419)
Q Consensus 294 ~I~L 297 (419)
.|.+
T Consensus 569 vi~p 572 (601)
T PF00133_consen 569 VIDP 572 (601)
T ss_dssp --BH
T ss_pred ccCH
Confidence 7764
No 103
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=70.63 E-value=5 Score=40.33 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=33.6
Q ss_pred ccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCce
Q 014776 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (419)
Q Consensus 216 ~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 295 (419)
..++..+|.|+..++.+.- .|--+. .| .+.|..++.. ..+ .+ +| +|||||. ++.|
T Consensus 235 ~~~v~~~G~D~~~fh~~~~-pa~l~~--~~--------------~~~~~~~~~~--~~~-~~-~g-~kmSkS~---gn~i 289 (319)
T cd00814 235 PELVHFIGKDIIRFHAIYW-PAMLLG--AG--------------LPLPTRIVAH--GYL-TV-EG-KKMSKSR---GNVV 289 (319)
T ss_pred CceEEEEeechhhhhHHHH-HHHHHh--CC--------------CCCCcEeeee--eeE-EE-CC-eeecccC---Cccc
Confidence 3579999999998764321 111111 11 3445544433 122 33 55 6999997 6788
Q ss_pred ecCC
Q 014776 296 NLLD 299 (419)
Q Consensus 296 ~L~D 299 (419)
.+.|
T Consensus 290 ~~~~ 293 (319)
T cd00814 290 DPDD 293 (319)
T ss_pred CHHH
Confidence 7743
No 104
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=70.50 E-value=2.5 Score=49.09 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.0
Q ss_pred hhcccceecccCchHH
Q 014776 213 LLYQSDFVPVGEDQKQ 228 (419)
Q Consensus 213 l~~~adivpvG~DQ~~ 228 (419)
+.+-+|+...|.||..
T Consensus 580 ~~~PaD~~~eG~Di~r 595 (961)
T PRK13804 580 LKWPADLYLEGSDQHR 595 (961)
T ss_pred cCCCceEEEEEccccc
Confidence 3456899999999974
No 105
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=70.18 E-value=26 Score=40.00 Aligned_cols=25 Identities=20% Similarity=0.120 Sum_probs=19.6
Q ss_pred cccceecccCch-HHHHHHHHHHHHH
Q 014776 215 YQSDFVPVGEDQ-KQHLELTRELAER 239 (419)
Q Consensus 215 ~~adivpvG~DQ-~~h~eLaRdia~r 239 (419)
|-+|+...|.|| .-|+-.+|-....
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~~~ 547 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFTKV 547 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHH
Confidence 459999999999 6788888855533
No 106
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=69.78 E-value=3.7 Score=46.62 Aligned_cols=70 Identities=26% Similarity=0.303 Sum_probs=38.4
Q ss_pred ccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCCc
Q 014776 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (419)
Q Consensus 216 ~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 294 (419)
-+|+...|.||... -+.+-++...- .+| ..| ..++.. ..+... +| +|||||. +|.
T Consensus 486 P~d~~~~G~Di~~~-w~~~~l~~~~~-~~~---------------~~Pf~~v~~h--g~v~~~-~G-~KMSKS~---GN~ 541 (800)
T PRK13208 486 PMDLRPQGHDIIRT-WLFYTILRAYL-LTG---------------KLPWKNIMIS--GMVLDP-DG-KKMSKSK---GNV 541 (800)
T ss_pred CceEEEeecchhhh-HHHHHHHHHHH-hcC---------------CCCcceEEEe--eEEECC-CC-CCCCCCC---CCC
Confidence 47899999999853 23334433221 122 123 233322 255444 56 6999997 678
Q ss_pred eecCC-----CHHHHHHHhh
Q 014776 295 INLLD-----PKDVIANKIK 309 (419)
Q Consensus 295 I~L~D-----spe~I~~KI~ 309 (419)
|.+.| .++.++=-+.
T Consensus 542 i~p~~~i~~yg~D~lR~~l~ 561 (800)
T PRK13208 542 VTPEELLEKYGADAVRYWAA 561 (800)
T ss_pred CCHHHHHHHcCccHHHHHHh
Confidence 87654 3444444444
No 107
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=69.22 E-value=3.8 Score=43.63 Aligned_cols=78 Identities=27% Similarity=0.172 Sum_probs=48.7
Q ss_pred hHHHHHhhhhcccceecccCc-hHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014776 205 PVLMASDILLYQSDFVPVGED-QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (419)
Q Consensus 205 PvLQaADil~~~adivpvG~D-Q~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~K 283 (419)
...|+.+.|--.-||--+|.| +-||+|- |+|+.-- .+|.+ .| .-.-+++. +|+= +| .|
T Consensus 210 CSaM~~~~LG~~~DIHgGG~DLiFPHHEN--EiAQsea-~~g~~-----------~~-a~yWmH~G---~l~i--~g-eK 268 (464)
T COG0215 210 CSAMSTKYLGETFDIHGGGSDLIFPHHEN--EIAQSEA-ATGVK-----------PF-AKYWMHNG---FLNI--DG-EK 268 (464)
T ss_pred HHHHHHHHhCCCcceecCcccccCCCccc--HHHHHHh-hhCCC-----------cc-eeEeEEcc---eeee--cC-cC
Confidence 467899999989999999999 5688875 4544322 13311 01 01123332 3322 56 79
Q ss_pred cccCCCCCCCceecCC-----CHHHHHH
Q 014776 284 MSKSAPSDQSRINLLD-----PKDVIAN 306 (419)
Q Consensus 284 MSKS~p~~~s~I~L~D-----spe~I~~ 306 (419)
||||- +|.|.+.| +|++++-
T Consensus 269 MSKSL---GNfiti~d~l~~~~p~~lR~ 293 (464)
T COG0215 269 MSKSL---GNFITVRDLLKKYDPEVLRL 293 (464)
T ss_pred ccccc---CCeeEHHHHHhhcCHHHHHH
Confidence 99997 68888766 5655553
No 108
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=67.61 E-value=4.2 Score=46.63 Aligned_cols=72 Identities=28% Similarity=0.359 Sum_probs=41.2
Q ss_pred cccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCC
Q 014776 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (419)
Q Consensus 215 ~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 293 (419)
+-+|+...|.||...+ ++|-++.-.. ..| +.| ..++.. ..|... +| +|||||. +|
T Consensus 477 ~P~d~~~~G~Dii~fw-~~~~~~~~~~-~~~---------------~~Pfk~v~~h--G~v~d~-~G-~KMSKS~---GN 532 (861)
T TIGR00422 477 YPTDLLVTGYDIIFFW-VARMIFRSLA-LTG---------------QVPFKEVYIH--GLVRDE-QG-RKMSKSL---GN 532 (861)
T ss_pred CCcceeecchhhhhHH-HHHHHHHHHH-hcC---------------CCchheEEEe--eEEECC-CC-CCCCcCC---CC
Confidence 4679999999998764 4455543221 112 334 222222 255554 56 6999997 67
Q ss_pred ceecCC-----CHHHHHHHhhh
Q 014776 294 RINLLD-----PKDVIANKIKR 310 (419)
Q Consensus 294 ~I~L~D-----spe~I~~KI~k 310 (419)
.|.+.| .++.++=-+..
T Consensus 533 ~i~p~~~i~~ygaDalR~~l~~ 554 (861)
T TIGR00422 533 VIDPLDVIEKYGADALRFTLAS 554 (861)
T ss_pred CCCHHHHHHHhChHHHHHHHHh
Confidence 887654 34444444443
No 109
>PLN02959 aminoacyl-tRNA ligase
Probab=67.44 E-value=4.7 Score=47.48 Aligned_cols=60 Identities=27% Similarity=0.270 Sum_probs=34.4
Q ss_pred cccceecccCchHHHHHHHHHHHHHHhhh--hCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCC
Q 014776 215 YQSDFVPVGEDQKQHLELTRELAERVNYL--YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (419)
Q Consensus 215 ~~adivpvG~DQ~~h~eLaRdia~r~n~~--~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 292 (419)
|=.|+...|.||...+- +.-+ |++. +|. -+-|..++.. ..|. + +| +|||||. |
T Consensus 670 yP~Dl~~sG~Dii~~wl-~~~l---~~~~al~~~-------------~P~p~~v~v~--G~V~-~-~G-~KMSKSk---G 724 (1084)
T PLN02959 670 YPFDLRVSGKDLIQNHL-TFAI---YNHTAIWAE-------------EHWPRGFRCN--GHLM-L-NS-EKMSKST---G 724 (1084)
T ss_pred CCCeEEEecccHHHHHH-HHHH---HHHHHhcCC-------------CCCCceEEEc--cEEe-c-CC-cCccccC---C
Confidence 45899999999976542 3333 2221 221 1233333322 2444 3 66 7999997 6
Q ss_pred CceecCC
Q 014776 293 SRINLLD 299 (419)
Q Consensus 293 s~I~L~D 299 (419)
|.|.+.|
T Consensus 725 NvI~p~d 731 (1084)
T PLN02959 725 NFLTLRQ 731 (1084)
T ss_pred CcCCHHH
Confidence 7877654
No 110
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=66.34 E-value=21 Score=39.98 Aligned_cols=73 Identities=12% Similarity=0.054 Sum_probs=43.2
Q ss_pred CceEE-EecCCCCcchhhhHHHHH--HHHHHHhhc--ccEEEEE-eCcce--ecC-----CCCH-HHHHHHHHHHHHHHH
Q 014776 78 KKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLFFI-VDLHA--ITL-----PYDT-QQLSKATRETAAIYL 143 (419)
Q Consensus 78 ~~~i~-tGi~PTG~lHLGnylg~i--k~~~~lQ~~--~~~~i~I-aDlhA--~t~-----~~~~-~~i~~~~~~~~a~~l 143 (419)
..++| .|.-+=+.+||||....+ .-+.++++. ++|+++. .|.|. ++. ..++ +..+.++..+..++.
T Consensus 248 ~V~mYvCGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d~~ 327 (699)
T PRK14535 248 NVRMYVCGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHEDAD 327 (699)
T ss_pred ceEEEecCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45555 465555889999987755 223444443 5775544 33332 111 1244 444566677888889
Q ss_pred HcCcCCC
Q 014776 144 ACGIDNS 150 (419)
Q Consensus 144 A~GlDp~ 150 (419)
++|+.+.
T Consensus 328 ~LnI~~p 334 (699)
T PRK14535 328 ALGVLRP 334 (699)
T ss_pred HcCCCCC
Confidence 9998764
No 111
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=65.42 E-value=5.2 Score=42.10 Aligned_cols=71 Identities=13% Similarity=0.016 Sum_probs=43.5
Q ss_pred CceE-EEecCCCCcchhhhHHHHH--HHHHHHhhc--ccEEEEE-eCcce--ecC-----CCCH-HHHHHHHHHHHHHHH
Q 014776 78 KKRI-VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLFFI-VDLHA--ITL-----PYDT-QQLSKATRETAAIYL 143 (419)
Q Consensus 78 ~~~i-~tGi~PTG~lHLGnylg~i--k~~~~lQ~~--~~~~i~I-aDlhA--~t~-----~~~~-~~i~~~~~~~~a~~l 143 (419)
+.++ .+|-=|=+.+||||..+.+ .-|.++++. ++|+++. .|.|- ++. ..++ +..+.++..+..++.
T Consensus 36 ~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~ 115 (411)
T TIGR03447 36 EAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDME 115 (411)
T ss_pred cceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3444 4677777999999987755 225555554 6776554 44442 111 1355 444566677888888
Q ss_pred HcCcC
Q 014776 144 ACGID 148 (419)
Q Consensus 144 A~GlD 148 (419)
++|+.
T Consensus 116 ~Lni~ 120 (411)
T TIGR03447 116 ALRVL 120 (411)
T ss_pred HcCCC
Confidence 88864
No 112
>PLN02943 aminoacyl-tRNA ligase
Probab=65.16 E-value=5.3 Score=46.45 Aligned_cols=71 Identities=23% Similarity=0.324 Sum_probs=42.9
Q ss_pred cccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc--eecCCCCcccccCCCCCCccccCCCCCC
Q 014776 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE--PLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (419)
Q Consensus 215 ~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~--~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 292 (419)
|-+|+...|.||. .+=++|-++.-.. ..| +.|. .++. ..+... +| +|||||. |
T Consensus 535 yP~dl~~~G~Dii-~fW~a~m~~~~~~-~~~---------------~~Pf~~v~~h---g~v~~~-~G-~KMSKS~---G 589 (958)
T PLN02943 535 YPTTVLETGHDIL-FFWVARMVMMGIE-FTG---------------TVPFSYVYLH---GLIRDS-QG-RKMSKTL---G 589 (958)
T ss_pred CCCeEEEEeehHH-HHHHHHHHHhhhh-hcC---------------CCChheEEEe---ccEECC-CC-CcccCcC---C
Confidence 4579999999998 4667776663221 111 3352 2222 244444 56 7999997 6
Q ss_pred CceecCC-----CHHHHHHHhhh
Q 014776 293 SRINLLD-----PKDVIANKIKR 310 (419)
Q Consensus 293 s~I~L~D-----spe~I~~KI~k 310 (419)
|.|...| .++.++--+..
T Consensus 590 N~i~p~~~i~~ygaDalR~~l~~ 612 (958)
T PLN02943 590 NVIDPLDTIKEFGTDALRFTLAL 612 (958)
T ss_pred CCCCHHHHHHhcCChHHHHHHHh
Confidence 8887655 45556554543
No 113
>PLN02943 aminoacyl-tRNA ligase
Probab=64.64 E-value=15 Score=42.80 Aligned_cols=45 Identities=22% Similarity=0.256 Sum_probs=28.1
Q ss_pred ceEEEe-cCCCCcchhhhHHHHH-HH-HHHHhhc--ccEEEEE-eCcceec
Q 014776 79 KRIVSG-VQPTGSIHLGNYLGAI-KN-WIALQNS--YETLFFI-VDLHAIT 123 (419)
Q Consensus 79 ~~i~tG-i~PTG~lHLGnylg~i-k~-~~~lQ~~--~~~~i~I-aDlhA~t 123 (419)
+.+..| =-+||.+|+||.+... +- +++++.. ++|.+.. .|-|.+-
T Consensus 90 f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl~ 140 (958)
T PLN02943 90 FVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHAGIA 140 (958)
T ss_pred EEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcccch
Confidence 555565 5679999999987644 22 4445443 5665444 6767653
No 114
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=64.45 E-value=8.7 Score=44.82 Aligned_cols=44 Identities=30% Similarity=0.252 Sum_probs=28.0
Q ss_pred ceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEEE-EEeCccee
Q 014776 79 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLF-FIVDLHAI 122 (419)
Q Consensus 79 ~~i~tGi-~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i-~IaDlhA~ 122 (419)
+.|.+|. -|||.+|+||.++...+ +.++++. ++|.+ .-.|-|.+
T Consensus 62 f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 111 (995)
T PTZ00419 62 FVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGI 111 (995)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCch
Confidence 4555554 36799999999875522 4556654 56644 44677766
No 115
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=64.09 E-value=24 Score=40.93 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=17.2
Q ss_pred ccccCCCCCCccccCCCCCCCceecCCCHHHHHHH
Q 014776 273 RVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (419)
Q Consensus 273 ~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~K 307 (419)
++..- +| .|||||. +|.| +|.+|.+|
T Consensus 594 fvlDe-~G-rKMSKSl---GN~v----~P~~V~~~ 619 (933)
T COG0060 594 FVLDE-KG-RKMSKSL---GNVV----DPQDVIDK 619 (933)
T ss_pred cEECC-CC-CCccccC---CCcC----CHHHHHHh
Confidence 55554 45 7999997 5666 45566555
No 116
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=63.40 E-value=9.6 Score=43.32 Aligned_cols=73 Identities=14% Similarity=0.203 Sum_probs=42.3
Q ss_pred CceEEE-ecCCCCcchhhhHHHHHHH--HHHHhhc--ccEEEEE-eCcceecC--------CCCH-------------HH
Q 014776 78 KKRIVS-GVQPTGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAITL--------PYDT-------------QQ 130 (419)
Q Consensus 78 ~~~i~t-Gi~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i~I-aDlhA~t~--------~~~~-------------~~ 130 (419)
++.+.+ .--|+|.+||||.++.+.. +.++++. ++|.+.. -|-|.+-. ..++ +-
T Consensus 39 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~~Glpie~~~ek~~g~~~~~~~~~~f~~~~~~~ 118 (800)
T PRK13208 39 VYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDDNGLPTERKVEKYYGIRKDDISREEFIELCREL 118 (800)
T ss_pred cEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCCCcchHHHHHHHHhCCCcccCCHHHHHHHHHHH
Confidence 355555 3457799999999875522 4555554 5665443 56565421 0111 13
Q ss_pred HHHHHHHHHHHHHHcCcCCC
Q 014776 131 LSKATRETAAIYLACGIDNS 150 (419)
Q Consensus 131 i~~~~~~~~a~~lA~GlDp~ 150 (419)
..++...+..++.++|+..|
T Consensus 119 ~~~~~~~~~~~~~~lg~s~D 138 (800)
T PRK13208 119 TDEDEKKFRELWRRLGLSVD 138 (800)
T ss_pred HHHHHHHHHHHHHHhCeeec
Confidence 33455567788888997544
No 117
>PLN02660 pantoate--beta-alanine ligase
Probab=62.62 E-value=30 Score=34.71 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=46.7
Q ss_pred cccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCc
Q 014776 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (419)
Q Consensus 215 ~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 294 (419)
.++|....|.-..|-+.+.|.+++.+|- |.-++.- +.+-- .|| ==||+-+
T Consensus 145 v~P~~a~FGeKD~QQl~vIrrmV~dL~~--------------------~v~I~~~--ptvRe-~dG-LA~SSRN------ 194 (284)
T PLN02660 145 VEPDVAVFGKKDYQQWRVIRRMVRDLDF--------------------DIEVVGS--PIVRE-ADG-LAMSSRN------ 194 (284)
T ss_pred cCCCEeeecchHHHHHHHHHHHHHHcCC--------------------CceEEee--CceEC-CCC-Ceecccc------
Confidence 3899999999999999999999998772 2222221 12222 255 3777653
Q ss_pred eecCCCHHHHHHHhhhccC
Q 014776 295 INLLDPKDVIANKIKRCKT 313 (419)
Q Consensus 295 I~L~Dspe~I~~KI~kA~T 313 (419)
.||++...+....|-++.+
T Consensus 195 ~yLs~~eR~~A~~l~~~L~ 213 (284)
T PLN02660 195 VRLSAEEREKALSISRSLA 213 (284)
T ss_pred ccCCHHHHHHHHHHHHHHH
Confidence 5777777677777766553
No 118
>PLN02381 valyl-tRNA synthetase
Probab=61.81 E-value=6 Score=46.51 Aligned_cols=60 Identities=25% Similarity=0.337 Sum_probs=38.3
Q ss_pred cccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc--eecCCCCcccccCCCCCCccccCCCCCC
Q 014776 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE--PLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (419)
Q Consensus 215 ~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~--~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 292 (419)
|-+|+..-|-||. ++=++|-++.-+-- .| ..|. .++. ++|.+- +| +|||||. |
T Consensus 607 ~P~d~~~~G~Dii-~~W~~rmi~~~~~~-~~---------------~~PFk~v~~h---G~V~D~-~G-~KMSKS~---G 661 (1066)
T PLN02381 607 YPTSVLETGHDIL-FFWVARMVMMGMQL-GG---------------DVPFRKVYLH---PMIRDA-HG-RKMSKSL---G 661 (1066)
T ss_pred CCCeeeeecchhh-hhHHHHHHHHHHHh-CC---------------CCchHHheec---ceEECC-CC-CCCCCCC---C
Confidence 5689999999998 56677777554321 12 3443 2222 366664 56 6999997 6
Q ss_pred CceecCC
Q 014776 293 SRINLLD 299 (419)
Q Consensus 293 s~I~L~D 299 (419)
|.|...|
T Consensus 662 NvIdP~~ 668 (1066)
T PLN02381 662 NVIDPLE 668 (1066)
T ss_pred CCCCHHH
Confidence 7776443
No 119
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=61.57 E-value=7 Score=45.62 Aligned_cols=60 Identities=25% Similarity=0.308 Sum_probs=37.1
Q ss_pred cccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc-eecCCCCcccccCCCCCCccccCCCCCCC
Q 014776 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (419)
Q Consensus 215 ~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~-~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 293 (419)
|-+|+...|.||.. +=++|-++.-+.. .| +.|. .++.- ++|.+- +| +|||||. ||
T Consensus 537 ~P~d~~~~G~Dii~-~W~arm~~~~~~~-~~---------------~~Pfk~v~~H--G~v~d~-~G-~KMSKSl---GN 592 (995)
T PTZ00419 537 FPTSLLETGSDILF-FWVARMVMMSLHL-TD---------------KLPFKTVFLH--AMVRDS-QG-EKMSKSK---GN 592 (995)
T ss_pred CCCcEEEechhHHh-HHHHHHHHHHHHh-cC---------------CCChHHHhcc--ceEECC-CC-CCcccCC---CC
Confidence 46899999999876 5566666554321 11 3452 23322 366554 56 6999997 67
Q ss_pred ceecC
Q 014776 294 RINLL 298 (419)
Q Consensus 294 ~I~L~ 298 (419)
.|...
T Consensus 593 vIdP~ 597 (995)
T PTZ00419 593 VIDPL 597 (995)
T ss_pred cCChH
Confidence 77543
No 120
>PLN02843 isoleucyl-tRNA synthetase
Probab=61.53 E-value=5.9 Score=46.16 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.5
Q ss_pred hhcccceecccCchHH
Q 014776 213 LLYQSDFVPVGEDQKQ 228 (419)
Q Consensus 213 l~~~adivpvG~DQ~~ 228 (419)
+.+-+|+...|.||..
T Consensus 561 ~~~PaDl~~eG~Di~r 576 (974)
T PLN02843 561 LSYPADLYLEGSDQHR 576 (974)
T ss_pred cCCCceeeeeeccccc
Confidence 4566999999999987
No 121
>PLN02286 arginine-tRNA ligase
Probab=61.27 E-value=9.3 Score=41.88 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=41.6
Q ss_pred ceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceec
Q 014776 218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 297 (419)
Q Consensus 218 divpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L 297 (419)
-+-.+|.||..|+.--..+++.++.... ..-..-+++.. .+|-++ +| +||||-. ++.|.|
T Consensus 330 ~IyVvg~~q~~hf~~v~~~l~~lG~~~~------------~~~~~l~h~~~---g~V~~~-~g-~kmStR~---G~~v~L 389 (576)
T PLN02286 330 IIYVTDVGQQQHFDMVFKAAKRAGWLPE------------DTYPRLEHVGF---GLVLGE-DG-KRFRTRS---GEVVRL 389 (576)
T ss_pred EEEEEeCcHHHHHHHHHHHHHHcCCCcc------------ccCCceEEEee---ccEECC-CC-CcccCCC---CCeeEH
Confidence 4566899999999999999998763100 00001122322 366444 55 5999885 789998
Q ss_pred CCCHHH
Q 014776 298 LDPKDV 303 (419)
Q Consensus 298 ~Dspe~ 303 (419)
.|==++
T Consensus 390 ~dllde 395 (576)
T PLN02286 390 VDLLDE 395 (576)
T ss_pred HHHHHH
Confidence 774333
No 122
>PLN02224 methionine-tRNA ligase
Probab=61.19 E-value=20 Score=39.72 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=42.7
Q ss_pred ccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCce
Q 014776 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (419)
Q Consensus 216 ~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 295 (419)
..++..+|.|-..++-+-= .|--+. -| ++.|..++.. ..+ .+ +| +|||||. +|.|
T Consensus 321 ~~~v~~iGKDii~fH~i~w-pa~l~~--~g--------------~~~P~~i~~~--g~l-~~-eG-~KMSKS~---GN~i 375 (616)
T PLN02224 321 PASLHLIGKDILRFHAVYW-PAMLMS--AG--------------LELPKMVFGH--GFL-TK-DG-MKMGKSL---GNTL 375 (616)
T ss_pred CcceEEEeecccccHHHHH-HHHHHH--CC--------------CCCCcEEEec--ccE-ec-CC-ccccccC---CccC
Confidence 5688999999988654322 111111 11 5667666553 233 33 66 7999997 6888
Q ss_pred ecCC-----CHHHHHHHhhhc
Q 014776 296 NLLD-----PKDVIANKIKRC 311 (419)
Q Consensus 296 ~L~D-----spe~I~~KI~kA 311 (419)
.+.| ++|.++=-+...
T Consensus 376 ~p~e~l~~ygaD~~R~yLl~~ 396 (616)
T PLN02224 376 EPFELVQKFGPDAVRYFFLRE 396 (616)
T ss_pred CHHHHHHHcCcHHHHHHHHhc
Confidence 7765 455565555543
No 123
>PLN02563 aminoacyl-tRNA ligase
Probab=60.24 E-value=6.4 Score=45.79 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=21.9
Q ss_pred cccceecccCch-HHHHHHHHHHHHHHh
Q 014776 215 YQSDFVPVGEDQ-KQHLELTRELAERVN 241 (419)
Q Consensus 215 ~~adivpvG~DQ-~~h~eLaRdia~r~n 241 (419)
+-+|+..+|.|| .-|+-.+|-....+.
T Consensus 615 ~PvD~yigG~dhailHLlY~Rfw~~~l~ 642 (963)
T PLN02563 615 MPVDLYVGGAEHAVLHLLYARFWHKVLY 642 (963)
T ss_pred CCCcEeeccHHHHhhHhHHHHHHHHHHH
Confidence 459999999999 578888888876654
No 124
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=60.11 E-value=6.3 Score=39.73 Aligned_cols=70 Identities=27% Similarity=0.160 Sum_probs=38.8
Q ss_pred hHHHHHhhhhcccceecccCchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014776 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (419)
Q Consensus 205 PvLQaADil~~~adivpvG~DQ~-~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~K 283 (419)
..-|+...|-..-||--+|.|-. ||+|=-+-.++-.+ |+. |. ..-+++. .|.- +| +|
T Consensus 195 Csam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~---g~~------------~a-~~W~H~g---~l~~--~g-~K 252 (300)
T PF01406_consen 195 CSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAAT---GKP------------FA-NYWMHNG---HLNV--DG-EK 252 (300)
T ss_dssp HHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHH---SS-------------SE-EEEEEE-----EEE--TT-CE
T ss_pred hHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhh---Cch------------HH-HHHHHHH---HHhh--cC-cc
Confidence 35677788877899999999975 78877555555443 210 10 1113332 3322 55 69
Q ss_pred cccCCCCCCCceecCC
Q 014776 284 MSKSAPSDQSRINLLD 299 (419)
Q Consensus 284 MSKS~p~~~s~I~L~D 299 (419)
||||. +|.|.+.|
T Consensus 253 MSKSl---gN~~~i~d 265 (300)
T PF01406_consen 253 MSKSL---GNFITIRD 265 (300)
T ss_dssp --TTT---T---BHHH
T ss_pred ccccC---CCEEEHHH
Confidence 99997 67787643
No 125
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=59.68 E-value=38 Score=31.45 Aligned_cols=75 Identities=13% Similarity=0.205 Sum_probs=39.2
Q ss_pred cCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcce-ec--CCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcCCcc
Q 014776 85 VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHA-IT--LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR 161 (419)
Q Consensus 85 i~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA-~t--~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~v~ 161 (419)
||| +|+||.-- ++...+ ...+++|.|+.-.- -+ ++-+.++-.+.++. .+...|+|.+++.|.-=.|+.
T Consensus 8 F~P---~H~GHl~~-i~~a~~--~~~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~---~~~~~~~~~~rv~i~pi~D~~ 78 (181)
T cd02168 8 FQP---FHNGHLAV-VLIALE--KAKKVIILIGSARTARNIKNPWTSEEREVMIEA---ALSDAGADLARVHFRPLRDHL 78 (181)
T ss_pred cCC---CCHHHHHH-HHHHHH--HCCeEEEEeCCCCCCCCCCCCcCHHHHHHHHHH---HHhccCCCcceEEEEecCCCC
Confidence 566 89999743 333322 22256666755422 12 23344443333333 233468999988877655542
Q ss_pred hhhHHHHH
Q 014776 162 AHVELMWL 169 (419)
Q Consensus 162 ~~~el~w~ 169 (419)
+.+..|.
T Consensus 79 -~~~~~W~ 85 (181)
T cd02168 79 -YSDNLWL 85 (181)
T ss_pred -CChHHHH
Confidence 2344455
No 126
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=59.44 E-value=43 Score=38.58 Aligned_cols=22 Identities=45% Similarity=0.451 Sum_probs=14.6
Q ss_pred ccccCCCCCCccccCCCCCCCceecCC
Q 014776 273 RVMSLTDGLSKMSKSAPSDQSRINLLD 299 (419)
Q Consensus 273 ~l~sL~dg~~KMSKS~p~~~s~I~L~D 299 (419)
+|-+= +| .|||||. ||.|...|
T Consensus 517 LVrDe-~G-~KMSKS~---GNvIDP~d 538 (877)
T COG0525 517 LVRDE-QG-RKMSKSK---GNVIDPLD 538 (877)
T ss_pred eEEcC-CC-CCCcccC---CCcCCHHH
Confidence 44443 56 7999997 67775443
No 127
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=57.59 E-value=6.2 Score=42.70 Aligned_cols=69 Identities=20% Similarity=0.306 Sum_probs=38.1
Q ss_pred ceecccCchHHHHHH-HHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCcee
Q 014776 218 DFVPVGEDQKQHLEL-TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (419)
Q Consensus 218 divpvG~DQ~~h~eL-aRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 296 (419)
++...|.|+..++.+ ---+..-.+ ..++.|..++.. ..|. + +| +|||||. +|.|.
T Consensus 289 ~~~~~G~D~~~Fh~~~~p~~l~~~~----------------~~~~~P~~v~~~--G~v~-~-~G-~KMSKS~---GN~I~ 344 (556)
T PRK12268 289 SYYFIGKDNIPFHSIIWPAMLLGSG----------------EPLKLPDEIVSS--EYLT-L-EG-GKFSKSR---GWGIW 344 (556)
T ss_pred EEEEEeeccCcchHHHHHHHHHhcC----------------CCCCCCCEeecc--CCEE-E-CC-eeeccCC---CcccC
Confidence 488889999764432 222211111 114566655543 2443 3 56 6999997 67887
Q ss_pred cCC-----CHHHHHHHhhh
Q 014776 297 LLD-----PKDVIANKIKR 310 (419)
Q Consensus 297 L~D-----spe~I~~KI~k 310 (419)
..| .++.++=-+.+
T Consensus 345 p~dli~~yGaDalR~~ll~ 363 (556)
T PRK12268 345 VDDALERYPPDYLRYYLAA 363 (556)
T ss_pred HHHHHHHcCcHHHHHHHHh
Confidence 654 34455544443
No 128
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=57.16 E-value=19 Score=38.21 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=55.6
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEE---
Q 014776 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASV--- 154 (419)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~i--- 154 (419)
+|+=..=-|||.+|||-.-.|+.|++--.+. ++.++=|-| +-.+ ..+......+..++.=+|+++|..-.
T Consensus 34 VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiED-TDq~-----R~v~gs~e~i~~~L~w~nl~~DEgP~~gG 107 (524)
T KOG1149|consen 34 VRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIED-TDQK-----RLIRGSEEAIYEDLKWANLDWDEGPGVGG 107 (524)
T ss_pred eEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEecc-cccc-----ccccchHHHHHHHHHhcCCCcccCCCcCC
Confidence 4554455678999999999999887543333 344433432 2222 12222333555677888999987643
Q ss_pred ----EEcCCcchh----hHHHHH----HhccccHHHHhhh
Q 014776 155 ----FVQSHVRAH----VELMWL----LSSATPIGWLNKM 182 (419)
Q Consensus 155 ----f~qS~v~~~----~el~w~----L~~~~~v~~l~r~ 182 (419)
|.||+-.+. ++-..- +-|+++-.+|..+
T Consensus 108 ~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~l 147 (524)
T KOG1149|consen 108 PFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDLL 147 (524)
T ss_pred CCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHHH
Confidence 678874332 211111 3377776665443
No 129
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=57.15 E-value=8.8 Score=42.15 Aligned_cols=67 Identities=24% Similarity=0.325 Sum_probs=43.3
Q ss_pred ceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc-eecCCCCcccccCCCCCCccccCCCCCCCcee
Q 014776 218 DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE-PLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (419)
Q Consensus 218 divpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~-~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 296 (419)
-|--+|.||.+|+.-.+-+++.... + .+. .++... -.++...+| .||||-. ++.|.
T Consensus 337 ~IyV~gadq~~~~~ql~~~l~~~g~--~----------------~~~~~~~h~~-~~l~~~~~g-~kmStR~---G~~vt 393 (577)
T COG0018 337 LIYVLGADQHGHFKQLKAVLELLGY--G----------------PDKEVLLHQG-VGLVRGGEG-VKMSTRA---GNVVT 393 (577)
T ss_pred EEEEeCCcchhHHHHHHHHHHHhcC--C----------------CccceEEEEE-EeeeECCCC-ccccccC---CceEE
Confidence 4667999999999999999888662 2 221 222110 122222133 6899996 78999
Q ss_pred cCCCHHHHHHH
Q 014776 297 LLDPKDVIANK 307 (419)
Q Consensus 297 L~Dspe~I~~K 307 (419)
|.|=-+++.+|
T Consensus 394 l~dllde~~er 404 (577)
T COG0018 394 LDDLLDEAGER 404 (577)
T ss_pred HHHHHHHHHHH
Confidence 98866666633
No 130
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=57.11 E-value=7.2 Score=44.69 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=19.7
Q ss_pred cccceecccCch-HHHHHHHHHHHHH
Q 014776 215 YQSDFVPVGEDQ-KQHLELTRELAER 239 (419)
Q Consensus 215 ~~adivpvG~DQ-~~h~eLaRdia~r 239 (419)
+-+|+...|.|| .-|+-.+|-....
T Consensus 519 ~PvD~yi~G~dhailHLlyaRf~~~~ 544 (842)
T TIGR00396 519 LPVDLYIGGAEHAILHLLYARFWHKF 544 (842)
T ss_pred CCCcEeeccHHHHHHHHHHHHHHHHH
Confidence 459999999999 6777777876543
No 131
>PLN02843 isoleucyl-tRNA synthetase
Probab=56.53 E-value=17 Score=42.38 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=42.3
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEE-EEEeCcceecC--------------CCCHHHHHHHHHH
Q 014776 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAITL--------------PYDTQQLSKATRE 137 (419)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~-i~IaDlhA~t~--------------~~~~~~i~~~~~~ 137 (419)
++.+..|. -++|.+|+||.+..+.+ +++++.. +++. +.--|-|.+-. ..+++++++.+++
T Consensus 33 ~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~ 112 (974)
T PLN02843 33 SFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAK 112 (974)
T ss_pred CEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHH
Confidence 34554553 35799999999875522 4455554 5553 34456664421 1245666555554
Q ss_pred H--------HHHHHHcCc--CCCc
Q 014776 138 T--------AAIYLACGI--DNSK 151 (419)
Q Consensus 138 ~--------~a~~lA~Gl--Dp~k 151 (419)
. ..++..+|+ |-++
T Consensus 113 ~~~~~~~~~~~~~~~lG~~~Dw~~ 136 (974)
T PLN02843 113 FAKKTVDTQRESFKRYGVWGDWEN 136 (974)
T ss_pred HHHHHHHHHHHHHHHhCCceecCC
Confidence 3 456678888 6554
No 132
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=54.40 E-value=54 Score=36.01 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=30.9
Q ss_pred eecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecC
Q 014776 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (419)
Q Consensus 219 ivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~ 298 (419)
+.++|.|-..++-+- ||.|-.. .-++.|..++... .+ -+ +| +|||||. ++.|+..
T Consensus 291 vhfIGKDii~FHav~---------------wPamL~~--~~~~lP~~i~ahg--~l-~~-~G-~KmSKSr---G~~V~~~ 345 (558)
T COG0143 291 VHFIGKDIIRFHAVY---------------WPAMLMA--AGLPLPTRIFAHG--FL-TL-EG-QKMSKSR---GNVVDPD 345 (558)
T ss_pred EEEeccccCcchhhH---------------HHHHHHh--CCCCCCCEEEeee--eE-EE-CC-ccccccC---CcEEeHH
Confidence 677788877766542 2211100 0145676665431 11 12 55 5999997 6788754
Q ss_pred C
Q 014776 299 D 299 (419)
Q Consensus 299 D 299 (419)
+
T Consensus 346 ~ 346 (558)
T COG0143 346 E 346 (558)
T ss_pred H
Confidence 4
No 133
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=53.30 E-value=8.8 Score=41.30 Aligned_cols=69 Identities=25% Similarity=0.114 Sum_probs=39.3
Q ss_pred hHHHHHhhhhcccceecccCchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014776 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (419)
Q Consensus 205 PvLQaADil~~~adivpvG~DQ~-~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~K 283 (419)
..-|+...|--.-||.-+|.|-. ||+|- ++|...-. +|. +.+...+.. ..| .+ +| +|
T Consensus 222 CsaMs~~~lg~~~DIH~GG~DliFPHHen--eiAqs~a~-~g~--------------~~~~~w~h~--g~l-~~-~g-~K 279 (490)
T PRK14536 222 CSAMSMKYLGEQCDIHIGGVDHIRVHHTN--EIAQCEAA-TGK--------------PWVRYWLHH--EFL-LM-NK-GK 279 (490)
T ss_pred HHHHHHHHcCCceeEEeccccCCCcchhh--HHHHHHHh-cCC--------------CcceEEEEc--CEE-ee-cC-cc
Confidence 34556666655679999999965 67655 44443221 231 122233322 122 23 55 69
Q ss_pred cccCCCCCCCceecC
Q 014776 284 MSKSAPSDQSRINLL 298 (419)
Q Consensus 284 MSKS~p~~~s~I~L~ 298 (419)
||||. +|.|.+.
T Consensus 280 MSKSl---GN~itl~ 291 (490)
T PRK14536 280 MSKSA---GQFLTLS 291 (490)
T ss_pred ccccC---CCcccHH
Confidence 99997 6788774
No 134
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=52.79 E-value=9.6 Score=41.00 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=32.6
Q ss_pred eecccCchHHHHHHHH-HHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceec
Q 014776 219 FVPVGEDQKQHLELTR-ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 297 (419)
Q Consensus 219 ivpvG~DQ~~h~eLaR-dia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L 297 (419)
+.+.|.|...++-+-- -+..- .| ++.|..++.. ..+. + +| +|||||. +|.|.+
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~----~~--------------~~~~~~~~~~--g~v~-~-~g-~KmSKS~---Gn~i~~ 338 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMG----LG--------------LPLPTQVFSH--GYLT-V-EG-GKMSKSL---GNVVDP 338 (530)
T ss_pred EEEEecccchhHHHHHHHHHHh----CC--------------CCCCCEEEee--ccEE-E-CC-ceecccC---CceecH
Confidence 8899999998653321 11111 12 4456555543 2443 2 45 7999997 688876
Q ss_pred CC
Q 014776 298 LD 299 (419)
Q Consensus 298 ~D 299 (419)
.|
T Consensus 339 ~d 340 (530)
T TIGR00398 339 SD 340 (530)
T ss_pred HH
Confidence 54
No 135
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=51.56 E-value=66 Score=32.21 Aligned_cols=68 Identities=25% Similarity=0.325 Sum_probs=45.7
Q ss_pred ccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCce
Q 014776 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (419)
Q Consensus 216 ~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 295 (419)
++|....|+-..|-+.+.|.+++.+|- |.-++.- +.+-- .|| ==||+-+ .
T Consensus 143 ~P~~a~FGeKD~QQl~vIrrmv~dL~~--------------------~v~I~~~--ptvRe-~dG-LA~SSRN------~ 192 (282)
T TIGR00018 143 QPDVAYFGEKDAQQLAVIRKLVADLFL--------------------DIEIVPV--PIVRE-EDG-LALSSRN------V 192 (282)
T ss_pred CCCeeEecccHHHHHHHHHHHHHHcCC--------------------CceEEEe--CceEC-CCC-Cchhhcc------c
Confidence 899999999999999999999998772 2222221 12222 255 3677653 5
Q ss_pred ecCCCHHHHHHHhhhccC
Q 014776 296 NLLDPKDVIANKIKRCKT 313 (419)
Q Consensus 296 ~L~Dspe~I~~KI~kA~T 313 (419)
+|+....+....|-++.+
T Consensus 193 ~Ls~~eR~~A~~l~~~L~ 210 (282)
T TIGR00018 193 YLTAEQRKIAPGLYRALQ 210 (282)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 777666666666666554
No 136
>PLN02610 probable methionyl-tRNA synthetase
Probab=51.43 E-value=52 Score=37.69 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=33.2
Q ss_pred eecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecC
Q 014776 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (419)
Q Consensus 219 ivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~ 298 (419)
+.++|.|-..++-+- |+.|-...+.-++.|..++.. ..+ -+ +| +|||||. +|.|+..
T Consensus 304 ~hfiGKDi~~fH~i~---------------wPa~L~a~g~~~~~p~~i~~~--g~l-~~-eG-~KMSKS~---GNvV~p~ 360 (801)
T PLN02610 304 YQFMGKDNVPFHTVM---------------FPSTLLGTGENWTMMKTISVT--EYL-NY-EG-GKFSKSK---GVGVFGN 360 (801)
T ss_pred EEEEeeecchhHHHH---------------HHHHHHhCCCCcCCCCEEEec--cCE-ec-CC-ceecCcC---CcccCHH
Confidence 688899888777542 221110011224567766653 133 22 66 6999997 6788754
Q ss_pred C
Q 014776 299 D 299 (419)
Q Consensus 299 D 299 (419)
|
T Consensus 361 ~ 361 (801)
T PLN02610 361 D 361 (801)
T ss_pred H
Confidence 3
No 137
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=48.94 E-value=11 Score=43.38 Aligned_cols=45 Identities=24% Similarity=0.255 Sum_probs=27.8
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEEEEE-eCccee
Q 014776 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAI 122 (419)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i~I-aDlhA~ 122 (419)
++.|++|. -+||.+|+||.+....+ +.++++. ++|.+.. -|-|.+
T Consensus 34 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gl 84 (861)
T TIGR00422 34 PFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHAGI 84 (861)
T ss_pred eEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcCCC
Confidence 35666654 36799999998875422 4455554 5664444 566655
No 138
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=47.98 E-value=12 Score=42.94 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=24.0
Q ss_pred CCCcchhhhHHHH--HHHHHHHhhc--ccEEEEEeCccee
Q 014776 87 PTGSIHLGNYLGA--IKNWIALQNS--YETLFFIVDLHAI 122 (419)
Q Consensus 87 PTG~lHLGnylg~--ik~~~~lQ~~--~~~~i~IaDlhA~ 122 (419)
+||.+|+||.+.. +.-.+++++. ++++++-+=.||=
T Consensus 44 VTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAG 83 (877)
T COG0525 44 VTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAG 83 (877)
T ss_pred CCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCC
Confidence 5899999998652 1334555554 6777777666663
No 139
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=46.29 E-value=94 Score=25.39 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=35.9
Q ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014776 356 WGTFKPLLTDALIEHLHPIQVRYEEIMSD-SAYLDKVLADGAAKAADIADATLNNVYQ 412 (419)
Q Consensus 356 ~~dlK~~La~~I~~~L~pirer~~~~~~d-~~~l~~iL~~GaekAr~iA~~tl~~Vr~ 412 (419)
-.++...+++...+..+.+|++..+..++ .+.+.+......+++++.+..|=.-|++
T Consensus 14 ~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e 71 (94)
T PF05957_consen 14 LEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRE 71 (94)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777777788888877776654 2344555555555666666666655554
No 140
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.27 E-value=35 Score=38.18 Aligned_cols=76 Identities=22% Similarity=0.267 Sum_probs=48.5
Q ss_pred CCCCCCCceEEEec-CCCCcchhhhHHH-HH-HHHHHHhhc--ccEEEEEeCcceecCCC----------CHHHHHHHHH
Q 014776 72 ASSSSVKKRIVSGV-QPTGSIHLGNYLG-AI-KNWIALQNS--YETLFFIVDLHAITLPY----------DTQQLSKATR 136 (419)
Q Consensus 72 ~~~~~~~~~i~tGi-~PTG~lHLGnylg-~i-k~~~~lQ~~--~~~~i~IaDlhA~t~~~----------~~~~i~~~~~ 136 (419)
+.....+.+|++-| -|||.+|+||... .| .-..++|+. ++|+=- -.|.||=-|. +-.-..+|+.
T Consensus 52 ~~d~sk~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihP-MGWDaFGLPAENAAiergv~P~sWT~~NI~ 130 (876)
T KOG0435|consen 52 DSDKSKKKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHP-MGWDAFGLPAENAAIERGVHPASWTINNIA 130 (876)
T ss_pred ccccCCCceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecC-CcccccCCchhhHHHhcCCCchhhhHHHHH
Confidence 33344456888888 5999999999633 12 335567765 555433 3466664331 2245567888
Q ss_pred HHHHHHHHcCcC
Q 014776 137 ETAAIYLACGID 148 (419)
Q Consensus 137 ~~~a~~lA~GlD 148 (419)
.|..++...|+.
T Consensus 131 ~Mk~Ql~~lg~~ 142 (876)
T KOG0435|consen 131 KMKQQLKSLGIS 142 (876)
T ss_pred HHHHHHHHcCcc
Confidence 888888888864
No 141
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=46.07 E-value=20 Score=39.11 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=40.2
Q ss_pred cceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCcee
Q 014776 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (419)
Q Consensus 217 adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 296 (419)
--+-.+|.||..|+.-...+++.++.... ..-+++.. .+|- + +| +||||-. |+.|.
T Consensus 326 ~~IyV~g~dq~~h~~~l~~~~~~lg~~~~---------------~~l~h~~~---g~V~-~-~g-~kmStR~---G~~v~ 381 (562)
T PRK12451 326 KALYVVGPEQSLHFNQFFTVLKKLGYTWV---------------DGMEHVPF---GLIL-K-DG-KKMSTRK---GRVVL 381 (562)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHcCCCcc---------------cCeEEEee---eeEe-c-CC-CCCcCCC---CCeeE
Confidence 34678999999999999999998763100 00111221 1342 3 45 5999996 68898
Q ss_pred cCCCHH
Q 014776 297 LLDPKD 302 (419)
Q Consensus 297 L~Dspe 302 (419)
|.|==+
T Consensus 382 l~dLld 387 (562)
T PRK12451 382 LEEVLE 387 (562)
T ss_pred HHHHHH
Confidence 877333
No 142
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=44.69 E-value=50 Score=26.74 Aligned_cols=43 Identities=14% Similarity=0.234 Sum_probs=34.4
Q ss_pred CCCccchHHHHHHhcCCCCHHHHHHHHhcCCcchHHHHHHHHHHH
Q 014776 325 ERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIE 369 (419)
Q Consensus 325 ~rp~v~~ll~i~~~~~~~~~eel~~~~~~l~~~dlK~~La~~I~~ 369 (419)
.|.-+..++.++. .+.+.+|+.++|-.+...++..++.-+...
T Consensus 29 tRI~V~~Il~~l~--~G~s~eeil~dyp~Lt~~dI~aal~ya~~~ 71 (79)
T COG2442 29 TRIPVWDILEMLA--AGESIEEILADYPDLTLEDIRAALRYAADR 71 (79)
T ss_pred ceecHHHHHHHHH--CCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 4555667777766 789999999999999988988888766654
No 143
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=44.29 E-value=10 Score=38.86 Aligned_cols=73 Identities=26% Similarity=0.195 Sum_probs=43.1
Q ss_pred cceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCcee
Q 014776 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (419)
Q Consensus 217 adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 296 (419)
--+-.+|.||..|+.-...+++.++..-. ... ..+... .++.+ .||+.|||+.. ++.|.
T Consensus 240 ~~iyV~~~~q~~hf~~l~~~l~~lg~~~~---------------~~~-~~H~~~-g~vl~-~~gk~~mstR~---G~~i~ 298 (354)
T PF00750_consen 240 KIIYVVGADQKGHFKQLFAILEALGYDPE---------------AVK-LQHVSF-GVVLL-KDGKVKMSTRK---GNVIT 298 (354)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHTT-HHH---------------HCT-EEEEEE--EEEE-TTBEESS-TTT---TSSTB
T ss_pred cEEEEecCchhhHHHHHHHHHHHhCCCCC---------------CCE-EEEEEE-EEEEc-CCCCccccCCC---CCceE
Confidence 44678999999999999999999873100 001 111111 12222 36623799996 68998
Q ss_pred cCCCHHHHHHHhhh
Q 014776 297 LLDPKDVIANKIKR 310 (419)
Q Consensus 297 L~Dspe~I~~KI~k 310 (419)
|.|==++..++.+.
T Consensus 299 l~dllde~~~~a~~ 312 (354)
T PF00750_consen 299 LDDLLDEAVERALE 312 (354)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 86655555555444
No 144
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.93 E-value=24 Score=38.78 Aligned_cols=42 Identities=24% Similarity=0.424 Sum_probs=29.7
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--ccE--EEEEeCcceec
Q 014776 82 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YET--LFFIVDLHAIT 123 (419)
Q Consensus 82 ~tGi~PTG~lHLGnylg~i--k~~~~lQ~~--~~~--~i~IaDlhA~t 123 (419)
||.=-|||.||+||.-+++ .-+.++-+. ++| -+.|.||=..+
T Consensus 123 ~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~ 170 (577)
T COG0018 123 YSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQI 170 (577)
T ss_pred EeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHH
Confidence 7899999999999987665 334444443 565 57888886544
No 145
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=42.89 E-value=14 Score=42.41 Aligned_cols=44 Identities=32% Similarity=0.355 Sum_probs=26.6
Q ss_pred ceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEE-EEEeCccee
Q 014776 79 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAI 122 (419)
Q Consensus 79 ~~i~tGi-~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~-i~IaDlhA~ 122 (419)
+.+.+|. -+||.+|+||.+....+ ++++++. ++|. +.-.|-|.+
T Consensus 38 f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~Gi 87 (874)
T PRK05729 38 FSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHAGI 87 (874)
T ss_pred EEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCccch
Confidence 4444433 35799999999875422 4455554 5654 444677766
No 146
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=42.71 E-value=27 Score=38.45 Aligned_cols=46 Identities=22% Similarity=0.213 Sum_probs=25.2
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEE-EEEeCcceec
Q 014776 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAIT 123 (419)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~-i~IaDlhA~t 123 (419)
++.+..|- -+||.+|+||.+....+ +++++.. ++|. .+--|-|.+-
T Consensus 24 ~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Glp 75 (601)
T PF00133_consen 24 KFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGLP 75 (601)
T ss_dssp EEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SHH
T ss_pred cEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCcc
Confidence 35555553 45799999999875522 4455554 5654 4446777663
No 147
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=42.33 E-value=15 Score=43.12 Aligned_cols=45 Identities=33% Similarity=0.388 Sum_probs=28.4
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEEEE-EeCccee
Q 014776 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLFF-IVDLHAI 122 (419)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i~-IaDlhA~ 122 (419)
++.|+.|. -+||.+|+||.++...+ +.+++.. ++|.+. -.|-|.+
T Consensus 49 ~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~Gl 99 (1052)
T PRK14900 49 PFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHAGI 99 (1052)
T ss_pred CEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCccch
Confidence 35666664 36799999999875422 4556654 566544 4566655
No 148
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=42.18 E-value=31 Score=35.34 Aligned_cols=40 Identities=23% Similarity=0.404 Sum_probs=23.7
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--ccE--EEEEeCcce
Q 014776 82 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YET--LFFIVDLHA 121 (419)
Q Consensus 82 ~tGi~PTG~lHLGnylg~i--k~~~~lQ~~--~~~--~i~IaDlhA 121 (419)
|+.--|||.+|+||.-.++ .-+.++-+. ++| ...|.||=-
T Consensus 26 ~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~ 71 (354)
T PF00750_consen 26 FSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGT 71 (354)
T ss_dssp E---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSH
T ss_pred ecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCH
Confidence 7888999999999986654 234444443 455 567777743
No 149
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=42.08 E-value=7.8 Score=40.35 Aligned_cols=55 Identities=24% Similarity=0.243 Sum_probs=29.7
Q ss_pred eecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecC
Q 014776 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (419)
Q Consensus 219 ivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~ 298 (419)
+..+|.|-..++.+-=-.. -+. -| ++.|..++.. ..+. + +| +|||||. ++.|+..
T Consensus 285 v~~iGkDi~~fH~i~~pa~-l~a--~~--------------~~lP~~i~~~--~~~~-~-~g-~K~SkS~---gn~i~~~ 339 (391)
T PF09334_consen 285 VHFIGKDIIRFHAIYWPAM-LLA--AG--------------LPLPRRIVVH--GFLT-L-DG-EKMSKSR---GNVIWPD 339 (391)
T ss_dssp EEEEEGGGHHHHHTHHHHH-HHH--CT--------------B---SEEEEE----EE-E-TT-CCEETTT---TESSBHH
T ss_pred EEEEccchhHHHHHHhHHH-Hhc--cc--------------CCCCCEEEee--eeEE-E-CC-eeccccC---CcccCHH
Confidence 6788888877765431111 000 11 6778776654 2333 3 66 6999997 6788653
No 150
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=41.50 E-value=26 Score=38.26 Aligned_cols=42 Identities=21% Similarity=0.453 Sum_probs=29.2
Q ss_pred eEEEecCCCCcchhhhHHHHH--HHHHHHhhc--ccE--EEEEeCcce
Q 014776 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQNS--YET--LFFIVDLHA 121 (419)
Q Consensus 80 ~i~tGi~PTG~lHLGnylg~i--k~~~~lQ~~--~~~--~i~IaDlhA 121 (419)
.-|++--|+|.+|+||.-+++ .-+.++.+. ++| .+.|.||=.
T Consensus 116 ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~G~ 163 (566)
T TIGR00456 116 IEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDWGR 163 (566)
T ss_pred EEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecchHH
Confidence 447899999999999987765 234455454 455 577888643
No 151
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=40.69 E-value=21 Score=42.62 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=20.7
Q ss_pred cchhhhhhHHHHHhhh--hcccceecccCchHHHH
Q 014776 198 GVALLTYPVLMASDIL--LYQSDFVPVGEDQKQHL 230 (419)
Q Consensus 198 ~~g~l~YPvLQaADil--~~~adivpvG~DQ~~h~ 230 (419)
+++.+-||--...+-+ .|-+|+.+=|.||....
T Consensus 653 p~a~~~~P~~~~~~~f~~~fPaD~i~eG~Dq~rgW 687 (1205)
T PTZ00427 653 PYAKVHYPFSTEKEDFHKIFPADFIAEGLDQTRGW 687 (1205)
T ss_pred hHHHhCCCcccchhhHhccCCceEEEEecchhccH
Confidence 4556667742112222 35699999999998754
No 152
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=40.37 E-value=1.2e+02 Score=26.47 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=46.4
Q ss_pred EecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecC-CCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcCC
Q 014776 83 SGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (419)
Q Consensus 83 tGi~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~ 159 (419)
.-+.=||++..-|.+-+ |.+..|-++++++-..==. .......+++.......+...|++|+++.+++=|-
T Consensus 32 IrvpC~Grv~~~~il~A------f~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~ 103 (124)
T PF02662_consen 32 IRVPCSGRVDPEFILRA------FEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWISA 103 (124)
T ss_pred EEccCCCccCHHHHHHH------HHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCc
Confidence 34555688887775433 4455777777655421100 11335667777778888889999999999987664
No 153
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=39.95 E-value=2.7e+02 Score=24.66 Aligned_cols=85 Identities=11% Similarity=0.190 Sum_probs=59.6
Q ss_pred CccchHHHHHHhcCCCCH--HHHHHHHhcCCcchHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Q 014776 327 PECNNLLSIYQLISGKTK--GEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIAD 404 (419)
Q Consensus 327 p~v~~ll~i~~~~~~~~~--eel~~~~~~l~~~dlK~~La~~I~~~L~pirer~~~~~~d~~~l~~iL~~GaekAr~iA~ 404 (419)
.+.+|+=..++++++.+. +.-..+ ..++++.+.++|...+..+.+.|...+..-..+..-+.+..++.+.+ +
T Consensus 19 ~~~~pv~~al~~ld~ss~g~~~~~~~-----f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~l-K 92 (142)
T PF04048_consen 19 DDFNPVELALSLLDDSSVGRAHRYQE-----FEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIREL-K 92 (142)
T ss_pred CCCcHHHHHHHhcCCCCccHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 456777777777776653 222223 33677888888888888888888887777667777777777777666 6
Q ss_pred HHHHHHHHHcCCC
Q 014776 405 ATLNNVYQAMGFL 417 (419)
Q Consensus 405 ~tl~~Vr~a~Gl~ 417 (419)
+.|...++.+|..
T Consensus 93 ~~L~~ak~~L~~~ 105 (142)
T PF04048_consen 93 ESLQEAKSLLGCR 105 (142)
T ss_pred HHHHHHHHHHhcC
Confidence 7788888777654
No 154
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=39.79 E-value=1.7e+02 Score=33.44 Aligned_cols=166 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred cceecccCchH----HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCC
Q 014776 217 SDFVPVGEDQK----QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (419)
Q Consensus 217 adivpvG~DQ~----~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 292 (419)
+|++.=|.||. |-.-|+---++. +.|.--+-.+ .+.-+= .| .|||||- +
T Consensus 567 aDv~LEG~DQ~rGWFQSsLLTsvA~q~---------------------kAPYk~vivH-GFtlDE-~G-~KMSKSl---G 619 (937)
T KOG0433|consen 567 ADVYLEGVDQFRGWFQSSLLTSVAVQN---------------------KAPYKKVIVH-GFTLDE-NG-NKMSKSL---G 619 (937)
T ss_pred eeeEEecchhcchHHHHHHHHHHHHhc---------------------cCCchheeee-eeEecC-Cc-cchhhcc---c
Q ss_pred CceecCCCHHHHHHHhhhccCCCCCCccc---CCCCCCccchHHHHHHhcCCCCHHHHHHHHh--------------cCC
Q 014776 293 SRINLLDPKDVIANKIKRCKTDSSAGLEF---DNLERPECNNLLSIYQLISGKTKGEVAEECQ--------------NMN 355 (419)
Q Consensus 293 s~I~L~Dspe~I~~KI~kA~Td~~~~i~~---~~~~rp~v~~ll~i~~~~~~~~~eel~~~~~--------------~l~ 355 (419)
|.| +|+.|-++-.+..-=+.+.+.+ +-..--++..--.++.... +.+..+..-++ .+.
T Consensus 620 NVi----dP~~v~~G~~k~payGaD~LR~WVA~~~~t~d~~iGp~il~qv~-e~l~K~R~T~RfllGnl~d~~~~~~~~p 694 (937)
T KOG0433|consen 620 NVV----DPTMVTDGSLKQPAYGADGLRFWVAGSENTGESKIGPKILDQVD-EKLIKFRNTFRFLLGNLQDFDGKQVKFP 694 (937)
T ss_pred CcC----CHHHHhCCcccCCCccccceeeeeecccccCceecCHHHHHHHH-HHHHHHHhHHHHHhhcccccCCcccccc
Q ss_pred cchH---HHHHHHHHHHhhhHHHHHHHHHhcCh------------------HHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 014776 356 WGTF---KPLLTDALIEHLHPIQVRYEEIMSDS------------------AYLDKVLADG--AAKAADIADATLNNVYQ 412 (419)
Q Consensus 356 ~~dl---K~~La~~I~~~L~pirer~~~~~~d~------------------~~l~~iL~~G--aekAr~iA~~tl~~Vr~ 412 (419)
.+|+ -+.+-..+.++...|||.|+.+.=+. +++++.|-.| ..-+|..+|.||..+..
T Consensus 695 ~~dl~~iDq~~L~ql~~~~~~i~e~Y~~Y~f~kVv~~lq~F~~~~lSa~YfdivKDRLY~~~~~s~~rrs~QttL~h~l~ 774 (937)
T KOG0433|consen 695 LKDLRYIDQYMLQQLDAIVKRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDIVKDRLYCDKVGSESRRSAQTTLHHLLH 774 (937)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHHHHH
Q ss_pred Hc
Q 014776 413 AM 414 (419)
Q Consensus 413 a~ 414 (419)
.+
T Consensus 775 ~l 776 (937)
T KOG0433|consen 775 NL 776 (937)
T ss_pred HH
No 155
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=39.48 E-value=1.1e+02 Score=32.27 Aligned_cols=69 Identities=26% Similarity=0.261 Sum_probs=39.5
Q ss_pred hHHHHHhhhhcccceecccCchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014776 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (419)
Q Consensus 205 PvLQaADil~~~adivpvG~DQ~-~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~K 283 (419)
..-|+..+|--.-|+.-+|.|-. +|+|- ++|+..- .+|+. +-+...+.. -.... +| +|
T Consensus 230 Csam~~~~lg~~~Dih~GG~DLifpHhen--eiaq~~A-~~g~~-------------~~~~~w~H~---g~l~~-~G-~K 288 (411)
T TIGR03447 230 CSAIATNRLGAGFDIQGGGSDLIFPHHEF--SAAHAEA-ATGVR-------------RMARHYVHA---GMIGL-DG-EK 288 (411)
T ss_pred HHHHHHHHcCCceecccCcccccccchHh--HHHHHHH-hcCCC-------------CcceEEEEC---CEECc-CC-CC
Confidence 45677777777789999999965 56654 3333321 13320 112233322 22233 56 79
Q ss_pred cccCCCCCCCceec
Q 014776 284 MSKSAPSDQSRINL 297 (419)
Q Consensus 284 MSKS~p~~~s~I~L 297 (419)
||||. +|.|.+
T Consensus 289 MSKSl---GN~i~~ 299 (411)
T TIGR03447 289 MSKSL---GNLVFV 299 (411)
T ss_pred ccCcC---CCCCCH
Confidence 99997 677776
No 156
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=39.24 E-value=1.4e+02 Score=26.92 Aligned_cols=65 Identities=23% Similarity=0.266 Sum_probs=32.9
Q ss_pred cCCCCcchhhhHHHHHHHHHHHhhccc-EEEEE-eCcceecC--CCCHHHHHHHHHHHHH-HHHHcCcCCCceEEEEcCC
Q 014776 85 VQPTGSIHLGNYLGAIKNWIALQNSYE-TLFFI-VDLHAITL--PYDTQQLSKATRETAA-IYLACGIDNSKASVFVQSH 159 (419)
Q Consensus 85 i~PTG~lHLGnylg~ik~~~~lQ~~~~-~~i~I-aDlhA~t~--~~~~~~i~~~~~~~~a-~~lA~GlDp~k~~if~qS~ 159 (419)
|+| +|+||.-- ++...+ .+| ++|+| .+...... +.+.++-. .++. .+...|+|-+++.++-..+
T Consensus 8 FdP---~H~GHl~~-i~~a~~---~~d~l~v~v~s~~~~~~~~~~~~~~~R~----~mi~~~~~~~~~~~~~v~v~~~~d 76 (163)
T cd02166 8 FQP---FHLGHLKV-IKWILE---EVDELIIGIGSAQESHTLENPFTAGERV----LMIRRALEEEGIDLSRYYIIPVPD 76 (163)
T ss_pred cCC---CCHHHHHH-HHHHHH---HCCEEEEEecCCCCCCCCCCCCCHHHHH----HHHHHHHHhcCCCcCeEEEEecCC
Confidence 566 99999743 333322 245 45545 34444332 23333222 2333 2233467777888866655
Q ss_pred c
Q 014776 160 V 160 (419)
Q Consensus 160 v 160 (419)
.
T Consensus 77 ~ 77 (163)
T cd02166 77 I 77 (163)
T ss_pred C
Confidence 4
No 157
>PLN02381 valyl-tRNA synthetase
Probab=39.07 E-value=20 Score=42.29 Aligned_cols=45 Identities=31% Similarity=0.381 Sum_probs=27.9
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEEEEE-eCccee
Q 014776 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAI 122 (419)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i~I-aDlhA~ 122 (419)
++.|.+|. -+||.+|+||.+....+ +.++++. ++|.+.. -|-|.+
T Consensus 129 ~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~Gl 179 (1066)
T PLN02381 129 PFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHAGI 179 (1066)
T ss_pred cEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCCcC
Confidence 35666664 46799999998875422 4455554 5665444 555655
No 158
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=38.02 E-value=21 Score=41.03 Aligned_cols=45 Identities=24% Similarity=0.303 Sum_probs=28.1
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEEEEE-eCccee
Q 014776 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAI 122 (419)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i~I-aDlhA~ 122 (419)
++.++.|. -|||.+|+||.+....+ +.+++.. ++|.+.. -|-|.+
T Consensus 37 ~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 87 (861)
T TIGR00392 37 EFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGL 87 (861)
T ss_pred CeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCcc
Confidence 46777776 24599999999875522 4556664 4554333 455554
No 159
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=36.44 E-value=15 Score=41.00 Aligned_cols=43 Identities=21% Similarity=0.294 Sum_probs=26.1
Q ss_pred ccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC-----CHHHHHHHhhh
Q 014776 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKR 310 (419)
Q Consensus 260 f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D-----spe~I~~KI~k 310 (419)
++.|..++.. ..|.. +| +|||||. +|.|...| .++.++=-+.+
T Consensus 311 ~~lP~~v~~h--g~v~~--~G-~KMSKS~---GNvV~p~dlie~ygaDalR~~ll~ 358 (673)
T PRK00133 311 YRLPTNVFAH--GFLTV--EG-AKMSKSR---GTFIWARTYLDHLDPDYLRYYLAA 358 (673)
T ss_pred CCCCCEEeee--ccEEe--cC-CcccccC---CcccCHHHHHHHcCchHHHHHHHh
Confidence 5667666543 24433 56 6999997 67887654 44555554443
No 160
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=34.20 E-value=24 Score=40.82 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=42.3
Q ss_pred ceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEE-EEEeCcceecC-------------CCCHHHHHHHHH---
Q 014776 79 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAITL-------------PYDTQQLSKATR--- 136 (419)
Q Consensus 79 ~~i~tGi-~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~-i~IaDlhA~t~-------------~~~~~~i~~~~~--- 136 (419)
+.+..|. -++|.+|+||.+..+.+ +++++.. ++|. ++--|-|.+-. ..+++++++.++
T Consensus 51 f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~~ 130 (912)
T PRK05743 51 FILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREYA 130 (912)
T ss_pred EEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHHH
Confidence 4555454 35799999999875522 5566664 4553 44456665532 014555444443
Q ss_pred -----HHHHHHHHcCc--CCCc
Q 014776 137 -----ETAAIYLACGI--DNSK 151 (419)
Q Consensus 137 -----~~~a~~lA~Gl--Dp~k 151 (419)
.+..++..+|+ |-++
T Consensus 131 ~~~~~~~~~~~~~lG~~~dw~~ 152 (912)
T PRK05743 131 LEQVDIQREDFKRLGVLGDWDN 152 (912)
T ss_pred HHHHHHHHHHHHHhCCcccCCC
Confidence 35567778898 5554
No 161
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=33.84 E-value=51 Score=24.50 Aligned_cols=38 Identities=18% Similarity=0.414 Sum_probs=25.9
Q ss_pred CCCccchHHHHHHhcCCCCHHHHHHHHhcCCcchHHHHHH
Q 014776 325 ERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLT 364 (419)
Q Consensus 325 ~rp~v~~ll~i~~~~~~~~~eel~~~~~~l~~~dlK~~La 364 (419)
.|..+..++..+ -.+.+.+||.++|-.+...+++.+|+
T Consensus 17 TRI~v~~i~~~~--~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 17 TRIPVRDILDLL--AAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp SS-BHHHHHHHH--HTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred ceecHHHHHHHH--HcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 455566666665 37899999999999999999988875
No 162
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=33.16 E-value=23 Score=41.15 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=22.6
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEEE
Q 014776 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLF 114 (419)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i 114 (419)
++.+.+|. -+||.+|+||.++.... +.++|+. ++|.+
T Consensus 26 kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~ 67 (938)
T TIGR00395 26 KFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLF 67 (938)
T ss_pred ceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCC
Confidence 34444443 25699999998875422 4566665 45544
No 163
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=32.18 E-value=42 Score=36.72 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=28.1
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--ccE--EEEEeCcce
Q 014776 82 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YET--LFFIVDLHA 121 (419)
Q Consensus 82 ~tGi~PTG~lHLGnylg~i--k~~~~lQ~~--~~~--~i~IaDlhA 121 (419)
|+.=-|||.+|+||.-+++ .-+.++-+. ++| ...|.||=.
T Consensus 119 ~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G~ 164 (562)
T PRK12451 119 YSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWGT 164 (562)
T ss_pred ecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCchH
Confidence 7899999999999986655 334444443 555 567788754
No 164
>PLN02286 arginine-tRNA ligase
Probab=31.41 E-value=37 Score=37.28 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=27.6
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--ccE--EEEEeCcce
Q 014776 82 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YET--LFFIVDLHA 121 (419)
Q Consensus 82 ~tGi~PTG~lHLGnylg~i--k~~~~lQ~~--~~~--~i~IaDlhA 121 (419)
|+.--|||.+|+||.-+++ .-+.++-+. ++| ...|.||=.
T Consensus 123 fsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~G~ 168 (576)
T PLN02286 123 FSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDWGT 168 (576)
T ss_pred ecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecchHH
Confidence 7999999999999986654 234444443 555 567788743
No 165
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=30.73 E-value=28 Score=37.51 Aligned_cols=73 Identities=15% Similarity=0.101 Sum_probs=42.6
Q ss_pred CceEE-EecCCCCcchhhhHHHHH--HHHHHHhhc--ccEEEE--EeCc-----------ceecC-----CCCH-HHHHH
Q 014776 78 KKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLFF--IVDL-----------HAITL-----PYDT-QQLSK 133 (419)
Q Consensus 78 ~~~i~-tGi~PTG~lHLGnylg~i--k~~~~lQ~~--~~~~i~--IaDl-----------hA~t~-----~~~~-~~i~~ 133 (419)
+.++| .|.-+=..+||||....+ .-+.++++. ++|.+. |+|+ -.++. ..++ +..+.
T Consensus 21 ~v~mY~CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~~ 100 (481)
T PRK14534 21 DVKVYACGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISRF 100 (481)
T ss_pred ceEEEeCCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHHH
Confidence 45555 354444779999987754 223344333 577653 4555 11221 1244 44556
Q ss_pred HHHHHHHHHHHcCcCCC
Q 014776 134 ATRETAAIYLACGIDNS 150 (419)
Q Consensus 134 ~~~~~~a~~lA~GlDp~ 150 (419)
++..+..++.++|+.+.
T Consensus 101 ~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 101 FTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 66778888899998764
No 166
>PRK10404 hypothetical protein; Provisional
Probab=29.97 E-value=2.4e+02 Score=23.83 Aligned_cols=56 Identities=11% Similarity=0.013 Sum_probs=37.3
Q ss_pred chHHHHHHHHHHHhhhHHHHHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014776 357 GTFKPLLTDALIEHLHPIQVRYEEIMSDSA-YLDKVLADGAAKAADIADATLNNVYQ 412 (419)
Q Consensus 357 ~dlK~~La~~I~~~L~pirer~~~~~~d~~-~l~~iL~~GaekAr~iA~~tl~~Vr~ 412 (419)
.++.+..++.-.+.++.+|++-+..+++-. .+.+.-....+++++.++.|=+-|++
T Consensus 22 e~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e 78 (101)
T PRK10404 22 EEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHE 78 (101)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 345555556666677777777777666532 55556666667788888888777765
No 167
>PLN02959 aminoacyl-tRNA ligase
Probab=28.97 E-value=32 Score=40.67 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=21.3
Q ss_pred CCCcchhhhHHHHHHH--HHHHhhc--ccEEEEEeCcce
Q 014776 87 PTGSIHLGNYLGAIKN--WIALQNS--YETLFFIVDLHA 121 (419)
Q Consensus 87 PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i~IaDlhA 121 (419)
++|.+||||.+....+ ..++|+. ++|. +.--||.
T Consensus 56 ~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vl-fp~G~d~ 93 (1084)
T PLN02959 56 MNGLLHLGHAFSLSKLEFAAAYHRLRGANVL-LPFAFHC 93 (1084)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHcCCCccC-CCCCcCC
Confidence 4699999999876533 4566665 3443 3334443
No 168
>KOG0437 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.25 E-value=1e+02 Score=35.08 Aligned_cols=31 Identities=13% Similarity=0.267 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHhcChHHHHHHHHHHH
Q 014776 361 PLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGA 396 (419)
Q Consensus 361 ~~La~~I~~~L~pirer~~~~~~d~~~l~~iL~~Ga 396 (419)
+.++..++..++--++.|+.- ..+++|+.|-
T Consensus 789 rvf~nemN~~i~~t~~aye~~-----~fk~aLK~Gf 819 (1080)
T KOG0437|consen 789 RVFENEMNALIAKTERAYEDT-----LFKDALKYGF 819 (1080)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-----HHHHHHHhhh
Confidence 455556666666665555533 3567777664
No 169
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=28.22 E-value=3.2e+02 Score=30.97 Aligned_cols=33 Identities=24% Similarity=0.225 Sum_probs=24.0
Q ss_pred hHHHHHhhhhcccceecccCchH-HHHHHHHHHHHH
Q 014776 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAER 239 (419)
Q Consensus 205 PvLQaADil~~~adivpvG~DQ~-~h~eLaRdia~r 239 (419)
..-|+...|--.-||.-+|.|-. ||+|= ++|+.
T Consensus 435 CSAMs~~~LG~~~DIHgGG~DLiFPHHEN--EiAQs 468 (699)
T PRK14535 435 CSAMSENLFGDTFDIHGGGADLQFPHHEN--EIAQS 468 (699)
T ss_pred HHHHHHHHcCCcceeECCccccCCCCCcc--HHHHH
Confidence 45677777777789999999964 77765 45543
No 170
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=27.83 E-value=68 Score=32.02 Aligned_cols=68 Identities=24% Similarity=0.303 Sum_probs=41.7
Q ss_pred ccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCce
Q 014776 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (419)
Q Consensus 216 ~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 295 (419)
++|..-.|..-.|.+.+-|++++.++ | |..++.. +.+.. .|| ..||+-+ .
T Consensus 141 ~Pd~~~FG~kd~gq~~~Lk~~~~dl~------------------~--~v~ii~~--~~vr~-~dG-laiSSRN------~ 190 (277)
T cd00560 141 QPDRAYFGEKDAQQLAVIRRMVRDLN------------------L--PVEIVGC--PTVRE-EDG-LALSSRN------V 190 (277)
T ss_pred CCCeEEECCCccccHHHHHHHHHHcC------------------C--eEEEEcC--Cceec-CCC-ceEeCCC------C
Confidence 78977788888888888898888755 2 2223321 11111 155 5898763 4
Q ss_pred ecCCCHHHHHHHhhhccC
Q 014776 296 NLLDPKDVIANKIKRCKT 313 (419)
Q Consensus 296 ~L~Dspe~I~~KI~kA~T 313 (419)
+|+....+....|-++.+
T Consensus 191 ~Ls~~~r~~A~~l~~~L~ 208 (277)
T cd00560 191 YLSAEERKEALALYRALK 208 (277)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 666555566666655543
No 171
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.39 E-value=1.1e+02 Score=33.83 Aligned_cols=99 Identities=19% Similarity=0.237 Sum_probs=54.2
Q ss_pred ceEEEec--CCCCcchhhhHHHHHHHHHHHhhcc-cEEEEEeCcceecCCC-CHHHHHHHHHHHHHHHHHcCcCCCceEE
Q 014776 79 KRIVSGV--QPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASV 154 (419)
Q Consensus 79 ~~i~tGi--~PTG~lHLGnylg~ik~~~~lQ~~~-~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~a~~lA~GlDp~k~~i 154 (419)
=.|+|-| +|-|.+||||.=-...++ -+.+++ -+-++-=|. |+|. +.++--..+.++++. +|++|=| |
T Consensus 247 GkV~TRFPPEPNG~LHIGHaKAInvNF-gyAk~~~G~cyLRfDD---TNPEkEee~yf~sI~e~V~W---LG~~P~k--v 317 (764)
T KOG1148|consen 247 GKVVTRFPPEPNGILHIGHAKAINVNF-GYAKAHGGVCYLRFDD---TNPEKEEEEYFESIKEMVAW---LGFEPYK--V 317 (764)
T ss_pred CeeEEeCCCCCCceeeecchhheeech-hhhhhhCCeEEEecCC---CCcchhhHHHHHHHHHHHHH---hCCCcee--e
Confidence 3567776 556999999973322232 123332 344444443 3443 334444444444442 5999976 4
Q ss_pred EEcCCcc-hhhHHHHHH-------hccccHHHHhhhhhHH
Q 014776 155 FVQSHVR-AHVELMWLL-------SSATPIGWLNKMIQFK 186 (419)
Q Consensus 155 f~qS~v~-~~~el~w~L-------~~~~~v~~l~r~~~~k 186 (419)
=..||+. +..+++..| .|+.+..++.+...++
T Consensus 318 TysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~ 357 (764)
T KOG1148|consen 318 TYSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFN 357 (764)
T ss_pred ecchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCC
Confidence 4678864 344444443 4888888777444443
No 172
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=27.37 E-value=40 Score=39.36 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=27.3
Q ss_pred CceEEEec-CCCCcchhhhHHHHH-HH-HHHHhhc--ccEEEEE-eCccee
Q 014776 78 KKRIVSGV-QPTGSIHLGNYLGAI-KN-WIALQNS--YETLFFI-VDLHAI 122 (419)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i-k~-~~~lQ~~--~~~~i~I-aDlhA~ 122 (419)
++.++.|. -+||.+|+||.+... +- +.+++.. ++|.+.. -|-|.+
T Consensus 42 ~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~Gl 92 (975)
T PRK06039 42 EFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGL 92 (975)
T ss_pred CEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCcc
Confidence 46666665 367999999988744 22 4455554 5554333 455554
No 173
>PLN02413 choline-phosphate cytidylyltransferase
Probab=27.30 E-value=1.2e+02 Score=30.66 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=19.7
Q ss_pred CCCCCCCCCCCceEEEecCCCCcchhhhHHHHHHHHHH
Q 014776 68 TAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIA 105 (419)
Q Consensus 68 ~~~~~~~~~~~~~i~tGi~PTG~lHLGnylg~ik~~~~ 105 (419)
.++.++...++.+||+- .-=-.+|.||. -++++..+
T Consensus 17 ~~~~~~~~~r~~rVyvd-G~FDLfH~GHi-r~L~qAK~ 52 (294)
T PLN02413 17 ATPSSSPSDRPVRVYAD-GIYDLFHFGHA-RSLEQAKK 52 (294)
T ss_pred CCCCCCCCCCceEEEEe-CchhhCCHHHH-HHHHHHHH
Confidence 33444455567777764 11123999995 44544433
No 174
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=26.70 E-value=43 Score=39.08 Aligned_cols=45 Identities=22% Similarity=0.351 Sum_probs=26.9
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEEE-EEeCccee
Q 014776 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLF-FIVDLHAI 122 (419)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i-~IaDlhA~ 122 (419)
++.+..|. -++|.+|+||.+..+.+ +++++.. +++.+ .-=|-|.+
T Consensus 55 ~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGl 105 (961)
T PRK13804 55 KFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGL 105 (961)
T ss_pred cEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCc
Confidence 35555554 35699999999875522 4455554 55533 33455554
No 175
>COG4320 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.61 E-value=69 Score=32.88 Aligned_cols=28 Identities=39% Similarity=0.721 Sum_probs=20.7
Q ss_pred CCcchhhhHHHHHHHHHHHhhcccEEEEEeCcce
Q 014776 88 TGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHA 121 (419)
Q Consensus 88 TG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA 121 (419)
.|..||||| |+.++ ..+.|+|-|+|+.-
T Consensus 62 cGD~HLgN~-ga~~~-----~~G~V~f~i~DFDe 89 (410)
T COG4320 62 CGDAHLGNF-GAARN-----SKGNVVFKIADFDE 89 (410)
T ss_pred ecccccccc-hhhcc-----CCCceEEEecccch
Confidence 478999997 66432 23789999999753
No 176
>PHA01929 putative scaffolding protein
Probab=26.27 E-value=4.8e+02 Score=26.09 Aligned_cols=29 Identities=17% Similarity=0.143 Sum_probs=23.2
Q ss_pred CCCCccchHHHHHHhcCCCCHHHHHHHHh
Q 014776 324 LERPECNNLLSIYQLISGKTKGEVAEECQ 352 (419)
Q Consensus 324 ~~rp~v~~ll~i~~~~~~~~~eel~~~~~ 352 (419)
.++|.+.+-+.|+..|++.+--++++.|+
T Consensus 116 ~gDp~laasv~~L~~~sg~~dlD~~RAfG 144 (306)
T PHA01929 116 EGDPQLAPSVSYLEAFSGLDKLDTVRAFG 144 (306)
T ss_pred cCCcccchHHHHHHHHhcCcchHHHHHHH
Confidence 46788888999999988776667777776
No 177
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=26.03 E-value=3.4e+02 Score=29.52 Aligned_cols=26 Identities=31% Similarity=0.389 Sum_probs=24.7
Q ss_pred ccceecccCchHHHHHHHHHHHHHHh
Q 014776 216 QSDFVPVGEDQKQHLELTRELAERVN 241 (419)
Q Consensus 216 ~adivpvG~DQ~~h~eLaRdia~r~n 241 (419)
++|....|.--.|-+.+.|.+++.+|
T Consensus 141 ~P~~a~fGeKD~QQl~vir~mv~dL~ 166 (512)
T PRK13477 141 QPKRAYFGEKDWQQLAIIRRLVADLN 166 (512)
T ss_pred CCCeeeecccHHHHHHHHHHHHHHcC
Confidence 89999999999999999999999887
No 178
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=25.88 E-value=1.9e+02 Score=31.22 Aligned_cols=66 Identities=21% Similarity=0.117 Sum_probs=37.2
Q ss_pred HHHhhhhcccceecccCchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcccc
Q 014776 208 MASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (419)
Q Consensus 208 QaADil~~~adivpvG~DQ~-~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSK 286 (419)
|+...|--.-||..+|.|-. ||+|-=+-.+... .|. +.+...+.. .+| -+ +| +||||
T Consensus 225 m~~~~lg~~~DIH~GG~DliFPHHene~Aqs~a~---~g~--------------~~~~~W~H~--g~l-~~-~g-~KMSK 282 (481)
T PRK14534 225 MNLEYFKSTLDIHLGGVDHIGVHHINEIAIAECY---LNK--------------KWCDMFVHG--EFL-IM-EY-EKMSK 282 (481)
T ss_pred HHHHHcCCcceEEecccccCCCcchhHHHHHhhh---cCC--------------CcceEEEEe--cEE-Ee-cC-ceecc
Confidence 45555545579999999976 5666533333222 231 222333322 132 23 55 69999
Q ss_pred CCCCCCCceecC
Q 014776 287 SAPSDQSRINLL 298 (419)
Q Consensus 287 S~p~~~s~I~L~ 298 (419)
|. +|.|.+.
T Consensus 283 Sl---GN~i~l~ 291 (481)
T PRK14534 283 SN---NNFITIK 291 (481)
T ss_pred cC---CCcccHH
Confidence 97 6788774
No 179
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.64 E-value=41 Score=36.36 Aligned_cols=81 Identities=26% Similarity=0.139 Sum_probs=49.2
Q ss_pred hhhHHHHHhhhhcccceecccCchH-HHH--HHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCC
Q 014776 203 TYPVLMASDILLYQSDFVPVGEDQK-QHL--ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD 279 (419)
Q Consensus 203 ~YPvLQaADil~~~adivpvG~DQ~-~h~--eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~d 279 (419)
+=..-||+|||-.+-||--+|.|=+ ||+ |+|.--|. |...-. +-..|++.+ .- . .
T Consensus 245 IECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~-~~~~~w----------------VnYflHtGh--L~--i-~ 302 (586)
T KOG2007|consen 245 IECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAA-FDDSQW----------------VNYFLHTGH--LT--I-N 302 (586)
T ss_pred eeeHHHHHHhhccccceecCcccccCCCcccHHHHHHHH-hcCCcc----------------ceeEEEcCe--ee--e-c
Confidence 3456899999999999999999976 555 55544443 221111 112345432 11 1 3
Q ss_pred CCCccccCCCCCCCceecCC-----CHHHHHHHhh
Q 014776 280 GLSKMSKSAPSDQSRINLLD-----PKDVIANKIK 309 (419)
Q Consensus 280 g~~KMSKS~p~~~s~I~L~D-----spe~I~~KI~ 309 (419)
| .|||||. +|.|-+-+ +|.+++--.+
T Consensus 303 g-~KMSKSL---kNFiTIke~Lk~~sp~qLRl~fl 333 (586)
T KOG2007|consen 303 G-EKMSKSL---KNFITIKEALKKYSPRQLRLAFL 333 (586)
T ss_pred c-chhhhhh---ccceeHHHHHHhcCHHHHHHHHH
Confidence 4 6999997 57887654 5555554443
No 180
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=24.72 E-value=2.4e+02 Score=25.05 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Q 014776 357 GTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNN 409 (419)
Q Consensus 357 ~dlK~~La~~I~~~L~pirer~~~~~~d~~~l~~iL~~GaekAr~iA~~tl~~ 409 (419)
..+|..+=++|++.|.|.=. -..+.+...+++++-....+++|+++|.+
T Consensus 19 Q~lKl~VRD~Vl~~l~~~~~----~~~~~~ea~~~i~~~~~~Ie~~A~~~l~~ 67 (130)
T PF09551_consen 19 QALKLKVRDAVLEYLSPWLS----QAKSKEEAREVIRENLPEIEQIAEEVLAE 67 (130)
T ss_pred HHHHHHHHHHHHHHHHHHhc----cCCCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 47899999999999888633 23466778888888888999999988864
No 181
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=24.17 E-value=2.5e+02 Score=29.36 Aligned_cols=70 Identities=26% Similarity=0.233 Sum_probs=41.7
Q ss_pred hHHHHHhhhhcccceecccCchH-HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCc
Q 014776 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (419)
Q Consensus 205 PvLQaADil~~~adivpvG~DQ~-~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~K 283 (419)
..-|+..+|--.-|+--+|.|-. +|+|- ++|+..- .+|.. +-+...+.. ..| .. +| +|
T Consensus 203 Csam~~~~lg~~~DIH~GG~DL~FPHHen--eiaq~~a-~~g~~-------------~~~~~w~H~--g~l-~~-~G-~K 261 (384)
T PRK12418 203 CSAIALNRLGSGFDIQGGGSDLIFPHHEF--SAAHAEA-ATGER-------------RFARHYVHA--GMI-GL-DG-EK 261 (384)
T ss_pred HHHHHHHHcCCCcccccCccccccchhHh--HHHHHHH-hcCCC-------------CcceEEEEC--CEE-CC-CC-Cc
Confidence 46778888877899999999965 56654 4444321 13320 112233332 122 33 56 69
Q ss_pred cccCCCCCCCceecC
Q 014776 284 MSKSAPSDQSRINLL 298 (419)
Q Consensus 284 MSKS~p~~~s~I~L~ 298 (419)
||||. +|.|.+.
T Consensus 262 MSKSl---GN~i~~~ 273 (384)
T PRK12418 262 MSKSR---GNLVFVS 273 (384)
T ss_pred ccCcC---CCcCCHH
Confidence 99997 6777764
No 182
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=24.14 E-value=3e+02 Score=25.26 Aligned_cols=65 Identities=22% Similarity=0.207 Sum_probs=30.6
Q ss_pred cCCCCcchhhhHHHHHHHHHHHhhccc-EEEEEeC-cceecC--CCCHHHHHHHHHHHHHHH-HHcCcCCCceEEEEcCC
Q 014776 85 VQPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIVD-LHAITL--PYDTQQLSKATRETAAIY-LACGIDNSKASVFVQSH 159 (419)
Q Consensus 85 i~PTG~lHLGnylg~ik~~~~lQ~~~~-~~i~IaD-lhA~t~--~~~~~~i~~~~~~~~a~~-lA~GlDp~k~~if~qS~ 159 (419)
|+| +|+||.-- ++... +.+| ++|+|+. ...... +-+.+ ++ ..++... ...+++.+++.++--.|
T Consensus 9 F~P---~H~GHl~~-i~~a~---~~~d~v~v~i~s~~~~~~~~~p~~~~---~R-~~mi~~a~~~~~~~~~~~~~~pi~D 77 (174)
T PRK01153 9 FQP---FHKGHLEV-IKWIL---EEVDELIIGIGSAQESHTLKNPFTAG---ER-ILMIRKALEEEGIDLSRYYIIPIPD 77 (174)
T ss_pred cCC---CCHHHHHH-HHHHH---HhCCEEEEEecCCCCCCCCCCCCCHH---HH-HHHHHHHHhcCCCCcceeeEecCCC
Confidence 566 99999743 33332 2455 5555643 222222 22333 22 2233322 23566555666555444
Q ss_pred c
Q 014776 160 V 160 (419)
Q Consensus 160 v 160 (419)
.
T Consensus 78 ~ 78 (174)
T PRK01153 78 I 78 (174)
T ss_pred c
Confidence 3
No 183
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=23.75 E-value=2e+02 Score=24.60 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC
Q 014776 394 DGAAKAADIADATLNNVYQAMG 415 (419)
Q Consensus 394 ~GaekAr~iA~~tl~~Vr~a~G 415 (419)
+-++++|+.|+.-|+++|+.||
T Consensus 37 ~e~~~lR~r~~~~Lk~~r~rl~ 58 (104)
T COG4575 37 DEAEELRSKAESALKEARDRLG 58 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777665
No 184
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=23.28 E-value=75 Score=31.72 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=23.1
Q ss_pred cccceecccCchHHHHHHHHHHHHHHh
Q 014776 215 YQSDFVPVGEDQKQHLELTRELAERVN 241 (419)
Q Consensus 215 ~~adivpvG~DQ~~h~eLaRdia~r~n 241 (419)
.++|+.-.|..-.|.+.+-+++++.+|
T Consensus 139 v~Pd~a~FG~kd~qq~~~l~~~~~~l~ 165 (281)
T PRK00380 139 VQPDVAYFGEKDYQQLAVIRRMVADLN 165 (281)
T ss_pred cCCCeeEECCCcchhHHHHHHHHHHcC
Confidence 379998888888899999999988866
No 185
>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]
Probab=23.06 E-value=1.5e+02 Score=25.00 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014776 372 HPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQA 413 (419)
Q Consensus 372 ~pirer~~~~~~d~~~l~~iL~~GaekAr~iA~~tl~~Vr~a 413 (419)
...|+-|..+...-+..++.+++|.-.+-+.|-+++.++|..
T Consensus 53 kdyrhGfd~li~~iD~a~klaqeGnl~eAKaaak~l~d~Rn~ 94 (100)
T COG3783 53 KDYRHGFDILIGQIDKADKLAQEGNLDEAKAAAKTLKDTRNT 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 457788888887777778888899999999999999998864
No 186
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=22.48 E-value=58 Score=39.07 Aligned_cols=44 Identities=25% Similarity=0.268 Sum_probs=27.2
Q ss_pred ceEEEec-CCCCcchhhhHHHHH-HH-HHHHhhc--ccEEE-EEeCccee
Q 014776 79 KRIVSGV-QPTGSIHLGNYLGAI-KN-WIALQNS--YETLF-FIVDLHAI 122 (419)
Q Consensus 79 ~~i~tGi-~PTG~lHLGnylg~i-k~-~~~lQ~~--~~~~i-~IaDlhA~ 122 (419)
+.++.|- -+||.+|+||.+... +- +.+++.. ++|.+ +--|-|.+
T Consensus 104 Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGl 153 (1205)
T PTZ00427 104 YIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGL 153 (1205)
T ss_pred EEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCc
Confidence 5556664 357999999988644 22 4455554 56643 33566665
No 187
>PLN02882 aminoacyl-tRNA ligase
Probab=21.75 E-value=60 Score=38.77 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=28.2
Q ss_pred CceEEEec-CCCCcchhhhHHHHH-HH-HHHHhhc--ccEE-EEEeCccee
Q 014776 78 KKRIVSGV-QPTGSIHLGNYLGAI-KN-WIALQNS--YETL-FFIVDLHAI 122 (419)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~i-k~-~~~lQ~~--~~~~-i~IaDlhA~ 122 (419)
++.++.|- -+||.+|+||.+... +- +.+++.. ++|. .+--|-|.+
T Consensus 39 ~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGl 89 (1159)
T PLN02882 39 EYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGL 89 (1159)
T ss_pred CEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCc
Confidence 35666664 357999999988644 22 4455554 5654 444677765
No 188
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.74 E-value=4.3e+02 Score=30.08 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=26.6
Q ss_pred CccccCCCCCCCceecCC-----CHHHHHHHhhhccCCCCCCcccCCCCCCccchHH
Q 014776 282 SKMSKSAPSDQSRINLLD-----PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLL 333 (419)
Q Consensus 282 ~KMSKS~p~~~s~I~L~D-----spe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll 333 (419)
.|||||.- |-+...| -.+.++-.|.-+. .+...+.++...-|++-.++
T Consensus 616 eKMSKSK~---NGVdP~~~v~~yG~D~tRl~ilf~a-p~~~~~nW~es~i~Gi~rwl 668 (876)
T KOG0435|consen 616 EKMSKSKH---NGVDPADVVLEYGVDTTRLYILFAA-PPRDPINWNESAIPGIKRWL 668 (876)
T ss_pred HHhhhccc---CCCCHHHHHHHhCchHHHHHHHhhC-CcccccccccccchhHHHHH
Confidence 69999974 4443333 4666777776543 23333445544445555554
No 189
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.33 E-value=1.2e+02 Score=31.86 Aligned_cols=60 Identities=10% Similarity=0.029 Sum_probs=38.4
Q ss_pred HHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCC---CCHHHHHHHHh-cCCcchHHHHHHHHHHHhhhHHHH
Q 014776 301 KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISG---KTKGEVAEECQ-NMNWGTFKPLLTDALIEHLHPIQV 376 (419)
Q Consensus 301 pe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~~~---~~~eel~~~~~-~l~~~dlK~~La~~I~~~L~pire 376 (419)
|.+++++.++.. + .-...++.++|+ ++++++.+... .-++.+.|+.||..+....+.-..
T Consensus 242 p~~~yq~~~~i~-------------D---~~~~~~~~~~t~l~~~eI~~i~~~~~~~~~~r~~k~~LA~e~~~~~hG~~~ 305 (401)
T COG0162 242 PYDFYQYWMNIE-------------D---ADVKRFLKLLTFLSLEEIEEIEKYVLKGPEPREAKKLLAKEVTKLVHGEEA 305 (401)
T ss_pred cHhhhhcHhcCc-------------H---HHHHHHHHHhCcCChHHHHHHHHHhhcCCChHHHHHHHHHHhhHhhcCHHH
Confidence 677777776654 1 233444444443 45666666443 236779999999999988887443
No 190
>PF12057 DUF3538: Domain of unknown function (DUF3538); InterPro: IPR021925 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain is found associated with PF00240 from PFAM. This domain has a conserved SDL sequence motif.
Probab=20.30 E-value=65 Score=28.25 Aligned_cols=46 Identities=20% Similarity=0.398 Sum_probs=28.5
Q ss_pred HHHHhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 014776 366 ALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAKAADIADATLNNVYQAM 414 (419)
Q Consensus 366 ~I~~~L~pirer~~~~~~d~~~l~~iL~~GaekAr~iA~~tl~~Vr~a~ 414 (419)
.+.+.|+|+.+||.+++.+....+- +.-..-|+-++.+++.|-+++
T Consensus 10 ~vq~RL~Pflery~~iL~~~~~~e~---~~~~~~re~~QRi~d~VsEal 55 (120)
T PF12057_consen 10 RVQERLQPFLERYHEILQEDPSFEY---ENNTQEREEDQRIFDLVSEAL 55 (120)
T ss_pred HHHHHHhHHHHHHHHHHhcCCCCCC---CCCccchhhHhHHHHHHHHHH
Confidence 4567899999999999877532221 111233555666666666554
Done!