Query 014776
Match_columns 419
No_of_seqs 184 out of 1336
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 17:37:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014776.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014776hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n9i_A Tryptophanyl-tRNA synth 100.0 6.7E-96 2E-100 735.1 33.3 328 78-418 15-344 (346)
2 3sz3_A Tryptophanyl-tRNA synth 100.0 4.2E-96 1E-100 736.1 31.2 331 78-418 6-339 (341)
3 3prh_A Tryptophanyl-tRNA synth 100.0 1E-95 4E-100 742.7 34.1 326 78-418 35-360 (388)
4 1i6k_A TRPRS, tryptophanyl-tRN 100.0 7.1E-91 2.4E-95 696.0 33.9 325 79-418 2-326 (328)
5 2yy5_A Tryptophanyl-tRNA synth 100.0 8.7E-91 3E-95 700.3 28.9 326 78-417 4-343 (348)
6 3tzl_A Tryptophanyl-tRNA synth 100.0 2.7E-89 9.1E-94 683.0 32.7 317 78-416 3-322 (322)
7 2el7_A Tryptophanyl-tRNA synth 100.0 3.2E-87 1.1E-91 671.8 33.9 320 79-417 2-328 (337)
8 1yi8_B Tryptophanyl-tRNA synth 100.0 1.4E-86 4.9E-91 670.3 34.3 325 76-418 20-350 (351)
9 2g36_A Tryptophanyl-tRNA synth 100.0 1.2E-86 4.1E-91 668.3 30.9 320 77-417 11-339 (340)
10 3jxe_A Tryptophanyl-tRNA synth 100.0 3.3E-72 1.1E-76 571.6 21.3 286 77-398 72-371 (392)
11 3a04_A Tryptophanyl-tRNA synth 100.0 6.1E-69 2.1E-73 545.5 20.9 280 77-392 69-367 (372)
12 3vgj_A Tyrosyl-tRNA synthetase 100.0 5.6E-68 1.9E-72 538.3 26.0 282 77-392 55-367 (373)
13 2cyc_A Tyrosyl-tRNA synthetase 100.0 2.2E-68 7.4E-73 542.1 19.0 282 78-390 33-370 (375)
14 2j5b_A Tyrosyl-tRNA synthetase 100.0 1.8E-67 6.3E-72 530.6 21.8 268 77-381 39-331 (348)
15 2cya_A Tyrosyl-tRNA synthetase 100.0 2.6E-67 9.1E-72 532.3 22.3 269 77-381 34-348 (364)
16 2ip1_A Tryptophanyl-tRNA synth 100.0 2.8E-68 9.6E-73 549.3 8.6 301 77-411 101-432 (432)
17 3tze_A Tryptophanyl-tRNA synth 100.0 4.9E-66 1.7E-70 528.0 21.1 274 77-384 100-395 (406)
18 3p0j_A Tyrosyl-tRNA synthetase 100.0 3.8E-65 1.3E-69 551.4 26.5 291 77-393 39-360 (690)
19 3hzr_A Tryptophanyl-tRNA synth 100.0 2.3E-65 7.9E-70 520.3 20.9 280 77-392 81-381 (386)
20 3hv0_A Tryptophanyl-tRNA synth 100.0 2.3E-64 7.8E-69 514.3 20.0 281 77-392 73-378 (393)
21 3i05_A Tryptophanyl-tRNA synth 100.0 8.8E-65 3E-69 517.7 13.8 287 77-399 77-392 (395)
22 3foc_A Tryptophanyl-tRNA synth 100.0 3.8E-64 1.3E-68 518.4 18.0 280 77-391 90-444 (451)
23 2cyb_A Tyrosyl-tRNA synthetase 100.0 4.4E-63 1.5E-67 494.3 23.1 265 77-381 31-322 (323)
24 2zp1_A Tyrosyl-tRNA synthetase 100.0 1.5E-61 5E-66 481.6 22.8 257 77-380 27-308 (314)
25 1r6u_A Tryptophanyl-tRNA synth 100.0 3.1E-62 1.1E-66 504.0 16.0 280 77-392 107-414 (437)
26 2dlc_X Tyrosyl-tRNA synthetase 100.0 1.1E-60 3.6E-65 488.7 22.2 278 77-395 38-354 (394)
27 1r6t_A Tryptophanyl-tRNA synth 100.0 1.9E-61 6.6E-66 503.8 16.4 280 77-392 154-461 (477)
28 1h3f_A Tyrosyl-tRNA synthetase 100.0 1E-60 3.4E-65 493.0 19.0 286 77-410 36-345 (432)
29 1n3l_A Tyrosyl-tRNA synthetase 100.0 4.3E-60 1.5E-64 480.9 22.7 265 77-379 34-329 (372)
30 2yxn_A Tyrosyl-tRNA synthetase 100.0 8.1E-60 2.8E-64 470.5 19.1 261 78-379 33-319 (322)
31 2pid_A Tyrosyl-tRNA synthetase 100.0 9E-57 3.1E-61 453.8 18.1 260 77-379 45-338 (356)
32 2jan_A Tyrosyl-tRNA synthetase 100.0 2.3E-56 7.9E-61 459.7 19.8 261 77-379 31-316 (432)
33 1y42_X Tyrosyl-tRNA synthetase 100.0 3.8E-55 1.3E-59 446.7 20.9 273 78-380 64-378 (392)
34 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 3E-54 1E-58 443.7 21.6 257 78-379 32-315 (420)
35 2ts1_A Tyrosyl-tRNA synthetase 100.0 7.2E-55 2.5E-59 447.6 16.9 260 77-380 29-315 (419)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 8.9E-49 3.1E-53 423.7 25.8 264 70-379 374-669 (690)
37 2ja2_A Glutamyl-tRNA synthetas 99.1 3.8E-10 1.3E-14 118.1 13.1 199 85-311 13-287 (498)
38 1nzj_A Hypothetical protein YA 99.1 6.5E-11 2.2E-15 116.6 5.5 176 84-289 11-234 (298)
39 3afh_A Glutamyl-tRNA synthetas 98.9 4.3E-10 1.5E-14 117.5 5.1 200 79-311 26-285 (488)
40 1j09_A Glutamyl-tRNA synthetas 98.9 9.3E-10 3.2E-14 114.5 5.6 192 86-310 9-272 (468)
41 2cfo_A Glutamyl-tRNA synthetas 98.7 3.2E-07 1.1E-11 96.0 18.4 194 84-311 7-277 (492)
42 3al0_C Glutamyl-tRNA(Gln) amid 98.7 6.8E-10 2.3E-14 118.5 -1.9 199 79-310 130-388 (592)
43 2o5r_A Glutamyl-tRNA synthetas 98.2 1.3E-05 4.5E-10 83.6 14.7 200 79-311 14-292 (481)
44 4g6z_A Glutamate-tRNA ligase; 98.1 3.6E-05 1.2E-09 80.3 15.8 200 78-310 25-293 (490)
45 3aii_A Glutamyl-tRNA synthetas 97.8 9.6E-05 3.3E-09 78.1 10.6 176 81-288 97-334 (553)
46 4gri_A Glutamate--tRNA ligase; 97.6 0.0011 3.8E-08 69.6 15.4 178 84-289 30-279 (512)
47 2csx_A Methionyl-tRNA syntheta 97.3 0.00044 1.5E-08 71.9 8.9 79 79-159 6-99 (497)
48 2d5b_A Methionyl-tRNA syntheta 97.2 0.00087 3E-08 69.6 9.4 79 79-159 4-97 (500)
49 1li5_A Cysrs, cysteinyl-tRNA s 96.4 0.2 6.9E-06 51.6 19.6 80 79-159 23-116 (461)
50 1iq0_A Arginyl-tRNA synthetase 96.0 0.0044 1.5E-07 66.1 4.7 41 79-119 106-152 (592)
51 3tqo_A Cysteinyl-tRNA syntheta 96.0 0.16 5.3E-06 52.6 16.1 71 81-151 29-112 (462)
52 1qtq_A GLNRS, protein (glutami 94.3 0.072 2.5E-06 56.2 7.4 94 80-180 28-130 (553)
53 2zue_A Arginyl-tRNA synthetase 94.3 0.03 1E-06 60.1 4.6 38 82-119 125-168 (629)
54 2hz7_A Glutaminyl-tRNA synthet 93.9 0.089 3E-06 58.1 7.4 91 83-180 71-170 (851)
55 3u1f_A Methionyl-tRNA syntheta 93.2 0.29 9.9E-06 51.0 9.6 87 77-166 9-109 (542)
56 1irx_A Lysyl-tRNA synthetase; 92.8 0.15 5E-06 53.4 6.6 78 79-159 22-129 (523)
57 3h99_A Methionyl-tRNA syntheta 91.5 0.64 2.2E-05 48.8 9.7 80 78-159 19-112 (560)
58 3u1f_A Methionyl-tRNA syntheta 91.2 3 0.0001 43.2 14.4 67 216-310 278-352 (542)
59 4dlp_A Aminoacyl-tRNA syntheta 90.3 1.2 4E-05 46.5 10.4 79 79-159 26-119 (536)
60 3kfl_A Methionyl-tRNA syntheta 90.0 1.4 4.9E-05 46.3 10.7 73 85-159 35-120 (564)
61 1rqg_A Methionyl-tRNA syntheta 89.1 1 3.5E-05 48.9 9.0 74 78-151 3-91 (722)
62 2x1l_A Methionyl-tRNA syntheta 84.8 2.4 8.2E-05 43.9 8.6 72 86-159 22-106 (524)
63 3kfl_A Methionyl-tRNA syntheta 83.9 0.31 1E-05 51.4 1.3 68 215-310 293-368 (564)
64 2x1l_A Methionyl-tRNA syntheta 83.4 0.32 1.1E-05 50.6 1.1 71 215-310 264-339 (524)
65 4dlp_A Aminoacyl-tRNA syntheta 81.7 0.38 1.3E-05 50.2 0.9 67 216-310 276-350 (536)
66 1wkb_A Leucyl-tRNA synthetase; 81.2 0.63 2.2E-05 51.1 2.5 71 215-309 602-678 (810)
67 3fnr_A Arginyl-tRNA synthetase 80.6 0.35 1.2E-05 50.0 0.2 39 82-120 36-80 (464)
68 1wz2_A Leucyl-tRNA synthetase; 78.3 0.85 2.9E-05 51.2 2.4 71 215-309 602-678 (967)
69 1ffy_A Isoleucyl-tRNA syntheta 77.8 2.1 7E-05 47.9 5.3 70 214-310 546-624 (917)
70 1ile_A Ilers, isoleucyl-tRNA s 77.7 1 3.6E-05 49.5 2.9 72 215-310 543-620 (821)
71 4arc_A Leucine--tRNA ligase; l 77.3 4.3 0.00015 45.1 7.7 73 78-150 54-140 (880)
72 1gax_A Valrs, valyl-tRNA synth 77.1 0.75 2.6E-05 51.1 1.5 72 215-310 480-557 (862)
73 3c8z_A Cysteinyl-tRNA syntheta 76.4 10 0.00036 38.0 9.7 79 80-160 42-134 (414)
74 3c8z_A Cysteinyl-tRNA syntheta 76.0 0.9 3.1E-05 45.9 1.6 30 209-238 237-267 (414)
75 3sp1_A Cysteinyl-tRNA syntheta 76.0 12 0.00041 38.9 10.2 74 78-151 42-139 (501)
76 1gax_A Valrs, valyl-tRNA synth 74.5 4.6 0.00016 44.8 6.9 73 78-150 35-137 (862)
77 3h99_A Methionyl-tRNA syntheta 73.0 1.2 4.1E-05 46.6 1.8 65 219-311 303-375 (560)
78 2v0c_A Aminoacyl-tRNA syntheta 66.1 3.3 0.00011 46.0 3.4 26 215-240 530-556 (878)
79 2v0c_A Aminoacyl-tRNA syntheta 65.9 8.8 0.0003 42.6 6.8 73 78-150 34-120 (878)
80 3cov_A Pantothenate synthetase 61.8 14 0.00047 35.9 6.5 26 216-241 152-177 (301)
81 1wkb_A Leucyl-tRNA synthetase; 61.8 8 0.00028 42.3 5.5 44 79-122 36-85 (810)
82 4arc_A Leucine--tRNA ligase; l 59.6 6.1 0.00021 44.0 4.0 27 215-241 542-569 (880)
83 3sp1_A Cysteinyl-tRNA syntheta 58.9 3.9 0.00013 42.6 2.2 32 207-238 244-276 (501)
84 3ag6_A Pantothenate synthetase 56.6 8.6 0.00029 37.1 4.0 65 216-312 141-207 (283)
85 1irx_A Lysyl-tRNA synthetase; 56.5 3.8 0.00013 42.6 1.6 71 215-310 229-308 (523)
86 3oqi_A YVMC, putative uncharac 50.3 55 0.0019 31.0 8.4 81 78-162 29-122 (257)
87 1ffy_A Isoleucyl-tRNA syntheta 49.6 15 0.00052 40.9 5.1 71 78-148 49-145 (917)
88 1rqg_A Methionyl-tRNA syntheta 47.5 6.1 0.00021 42.8 1.5 44 260-311 326-374 (722)
89 1ile_A Ilers, isoleucyl-tRNA s 46.6 8.4 0.00029 42.3 2.5 45 78-122 39-89 (821)
90 3foc_A Tryptophanyl-tRNA synth 46.0 5 0.00017 41.2 0.5 13 220-232 237-249 (451)
91 1f7u_A Arginyl-tRNA synthetase 44.8 15 0.0005 39.1 3.9 38 82-119 149-192 (607)
92 3fnr_A Arginyl-tRNA synthetase 41.7 17 0.00059 37.3 3.7 73 200-299 215-298 (464)
93 1wz2_A Leucyl-tRNA synthetase; 39.7 10 0.00036 42.4 1.8 37 78-114 35-76 (967)
94 3oqv_A ALBC; rossman fold, cyc 36.5 62 0.0021 30.5 6.3 84 77-162 28-124 (247)
95 3uk2_A Pantothenate synthetase 25.5 59 0.002 31.2 4.2 27 215-241 140-166 (283)
96 1f7u_A Arginyl-tRNA synthetase 25.3 26 0.00089 37.2 1.9 26 216-241 363-390 (607)
97 1qtq_A GLNRS, protein (glutami 22.1 33 0.0011 36.0 1.9 34 203-236 210-243 (553)
98 1y66_A Engrailed homeodomain; 21.2 1.1E+02 0.0037 21.0 3.6 30 387-416 7-36 (52)
No 1
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=6.7e-96 Score=735.14 Aligned_cols=328 Identities=47% Similarity=0.764 Sum_probs=314.1
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 014776 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (419)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~q 157 (419)
+++||||++|||.+|||||+|+|++|++||+.++++|+||||||+|++.+++++++++++++++|+|+|+||+|++||+|
T Consensus 15 ~~~i~sG~~PTG~lHLGh~vg~l~~~~~lQ~~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if~q 94 (346)
T 3n9i_A 15 KPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTIFVQ 94 (346)
T ss_dssp CCEEEEEECSCSCCBHHHHHHTHHHHHTTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCTTTSEEEEG
T ss_pred CCEEEECcCCCCcccHHHHHHHHHHHHHHHhhCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEec
Confidence 57999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchHHHHHHHHHHH
Q 014776 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (419)
Q Consensus 158 S~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~eLaRdia 237 (419)
|+|++|.+++|+|.|.+++++|+|+++||++..+.+ +++++|+|+||+||||||++|++|+||||.||+||+|||||+|
T Consensus 95 S~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltRdia 173 (346)
T 3n9i_A 95 SHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRDIA 173 (346)
T ss_dssp GGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHSG-GGCBHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHhhHHHHHHHHHHHHHHhccC-CCCCchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHHHHH
Confidence 999999999999999999999999999999887653 6789999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhccCCCCC
Q 014776 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317 (419)
Q Consensus 238 ~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~ 317 (419)
+|||++|| .+|++|++++++++++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+..
T Consensus 174 ~rfn~~yg------------~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~kA~Td~~~ 241 (346)
T 3n9i_A 174 SRFNNLYG------------DIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDSDE 241 (346)
T ss_dssp HHHHHHHS------------SCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHTCCCCCCS
T ss_pred HHhccccC------------CcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHhCcCCCCC
Confidence 99999998 569999999987668999999898999999987679999999999999999999999976
Q ss_pred --CcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCCcchHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHHHHHH
Q 014776 318 --GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADG 395 (419)
Q Consensus 318 --~i~~~~~~rp~v~~ll~i~~~~~~~~~eel~~~~~~l~~~dlK~~La~~I~~~L~pirer~~~~~~d~~~l~~iL~~G 395 (419)
.+.++++++|+++|++.||..++++++++++++|++.++++||+.|+++|+++|+|||+||+++++|+++|++||++|
T Consensus 242 ~~~~~~~~~~~p~v~~l~~~~~~~~~~~~eel~~~y~~~~~g~lK~~lae~l~~~L~pirer~~~~~~~~~~l~~il~~G 321 (346)
T 3n9i_A 242 PALIRYDVEKKAGVSNLLDILSGVTGQSIPELEAQFTGQMYGHLKGAVADAVSGMLSELQERYRTYREDEALLQDVMREG 321 (346)
T ss_dssp SCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CccccCCCCCCCChhHHHHHHHhcCCccHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 466788899999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Q 014776 396 AAKAADIADATLNNVYQAMGFLR 418 (419)
Q Consensus 396 aekAr~iA~~tl~~Vr~a~Gl~~ 418 (419)
++|||++|++||++||++|||.+
T Consensus 322 ~~kA~~~A~~tl~~v~~~~g~~~ 344 (346)
T 3n9i_A 322 AAKARARAQVTLAKVYEAIGFVA 344 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999974
No 2
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=4.2e-96 Score=736.05 Aligned_cols=331 Identities=44% Similarity=0.737 Sum_probs=314.5
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 014776 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (419)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~q 157 (419)
+++||||++|||.+|||||+|+|++|++||+.++++|+||||||+|++.+++++++++++++++|+|+||||+|++||+|
T Consensus 6 ~~~v~sG~~PTG~lHLGhy~g~l~~~~~lQ~~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~q 85 (341)
T 3sz3_A 6 KPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFVQ 85 (341)
T ss_dssp SCEEEEEECSSSCCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred CCEEEeCcCCCCcccHHHHHHHHHHHHHHHhcCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEec
Confidence 46999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchHHHHHHHHHHH
Q 014776 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (419)
Q Consensus 158 S~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~eLaRdia 237 (419)
|+|++|++|+|+|+|.+++++|+||++||++..+.+ +++++|+|+||+|||||||+|++|+||||.||+||+|||||+|
T Consensus 86 S~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~hlel~Rdia 164 (341)
T 3sz3_A 86 SHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA-NDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIA 164 (341)
T ss_dssp GGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG-GGCCHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc-CCCChhhHHhHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHH
Confidence 999999999999999999999999999999987764 6789999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhccCCCCC
Q 014776 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317 (419)
Q Consensus 238 ~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~ 317 (419)
+|||+.||.. .++|++|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+
T Consensus 165 ~rfn~~yg~~---------~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~a~Td~~~ 235 (341)
T 3sz3_A 165 TRFNNIYSPE---------QPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQTDAET 235 (341)
T ss_dssp HHHHHHHCSS---------SCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHTCCCCCCS
T ss_pred HHhchhccCC---------CcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhhccCCCCC
Confidence 9999999831 1368999999986558999998888899999987789999999999999999999999987
Q ss_pred --CcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhc-CCcchHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHHHHH
Q 014776 318 --GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQN-MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLAD 394 (419)
Q Consensus 318 --~i~~~~~~rp~v~~ll~i~~~~~~~~~eel~~~~~~-l~~~dlK~~La~~I~~~L~pirer~~~~~~d~~~l~~iL~~ 394 (419)
.+.++++++|+++|+|.||++|+++++++++++|.+ ++|++||+.|+++|+++|+|||+||+++++|+++|++||++
T Consensus 236 ~~~~~~~~~~~p~v~~l~~~~~~~~~~~~e~i~~~~~g~~~~g~~K~~lae~i~~~l~pirer~~~~~~~~~~l~~il~~ 315 (341)
T 3sz3_A 236 PPRIAYDVENKAGIANLMGLYSAATGKTFAEIEAQYAGVEMYGPFKKDVGEAVVAMLEPVQAEYQRIRNDREYLNSVMRD 315 (341)
T ss_dssp SCCCCCCTTTCHHHHHHHHHHHHHHCCCHHHHHHHTTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CcccccCCCCCcchhHHHHHHHHcCCccHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 567788999999999999999999999999999986 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCC
Q 014776 395 GAAKAADIADATLNNVYQAMGFLR 418 (419)
Q Consensus 395 GaekAr~iA~~tl~~Vr~a~Gl~~ 418 (419)
|++|||++|++||++||++|||.+
T Consensus 316 G~~kA~~~A~~tl~~v~~~~g~~~ 339 (341)
T 3sz3_A 316 GAEKASAKALQTLKKVYAAVGFVA 339 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999975
No 3
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=1e-95 Score=742.71 Aligned_cols=326 Identities=48% Similarity=0.762 Sum_probs=305.6
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 014776 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (419)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~q 157 (419)
+++||||++|||.+|||||+|+|++|++||+.++|+|+||||||+|++.+++++++++++++++|+|+||||+|++||+|
T Consensus 35 ~~ri~sG~~PTG~lHLGhyvGal~~~~~LQ~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~q 114 (388)
T 3prh_A 35 KQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQ 114 (388)
T ss_dssp CCEEEEEECCCSCCBHHHHHHTHHHHHHTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred CCeEEEeeCCCCcchHHHHHHHHHHHHHHHccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEec
Confidence 35699999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchHHHHHHHHHHH
Q 014776 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (419)
Q Consensus 158 S~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~eLaRdia 237 (419)
|+|++|++++|+|+|.++++||+|+++||++.+.. +++++|+|+||+|||||||+|++|+||||.||+||+|||||||
T Consensus 115 S~v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~--~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia 192 (388)
T 3prh_A 115 SEVPAHAQAGWMMQCVAYIGELERMTQFKDKSKGN--EAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLA 192 (388)
T ss_dssp GGSTHHHHHHHHHHTTSCHHHHHTTC------------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHhhccHHHHHhhhhHhHHhhcc--CCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHH
Confidence 99999999999999999999999999999887653 6899999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhccCCCCC
Q 014776 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317 (419)
Q Consensus 238 ~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~ 317 (419)
+|||+.|| .+|.+|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.+
T Consensus 193 ~rfn~~y~------------~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~ka~TD~~~ 260 (388)
T 3prh_A 193 ERFNKKYN------------DIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVTDSEG 260 (388)
T ss_dssp HHHHHHTC------------SCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHTCCCCSSC
T ss_pred HHhCcccC------------CCcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhhccCCCCC
Confidence 99999998 569999999987668999998888999999998889999999999999999999999998
Q ss_pred CcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCCcchHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHHHHHHHH
Q 014776 318 GLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAA 397 (419)
Q Consensus 318 ~i~~~~~~rp~v~~ll~i~~~~~~~~~eel~~~~~~l~~~dlK~~La~~I~~~L~pirer~~~~~~d~~~l~~iL~~Gae 397 (419)
.++++++++|+++|+|+||++++++++++++++|.+.+|++||+.|+++|+++|+|||+||+++++|+ +|++||++|++
T Consensus 261 ~~~~~~~~~p~v~~l~~i~~~~~~~~~eel~~~y~g~~~g~lK~~lae~l~~~l~pirer~~~~~~~~-~l~~il~~Ga~ 339 (388)
T 3prh_A 261 IVKFDKENKPGVSNLLTIYSILGNTTIEELEAKYEGKGYGEFKGDLAEVVVNALKPIQDRYYELIESE-ELDRILDEGAE 339 (388)
T ss_dssp CCCCCTTTCHHHHHHHHHHHHHHTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSH-HHHHHHHHHHH
T ss_pred cccCCCCCCCCcchHHHHHHhcCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh-HHHHHHHHHHH
Confidence 89999999999999999999999999999999998779999999999999999999999999999999 79999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCC
Q 014776 398 KAADIADATLNNVYQAMGFLR 418 (419)
Q Consensus 398 kAr~iA~~tl~~Vr~a~Gl~~ 418 (419)
|||++|++||++||++|||.+
T Consensus 340 kA~~~A~~tl~~v~~~~g~~~ 360 (388)
T 3prh_A 340 RANRTANKMLKKMENAMGLGR 360 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999964
No 4
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=7.1e-91 Score=696.05 Aligned_cols=325 Identities=48% Similarity=0.773 Sum_probs=309.4
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcC
Q 014776 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (419)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS 158 (419)
+++||||+|||.+|||||+|+|++|++||+.++++|+||||||+|++.+++++++++++++++|+|+|+||+|++||+||
T Consensus 2 ~~vysG~~PTG~lHlGn~vg~l~~~~~lQ~g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~qS 81 (328)
T 1i6k_A 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQS 81 (328)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHHTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHcCCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEecC
Confidence 58999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchHHHHHHHHHHHH
Q 014776 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238 (419)
Q Consensus 159 ~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~eLaRdia~ 238 (419)
+|++|.+++|+++|.+++++|+||++||++..+ + +++++|+|+||+||||||++|++|+||||.||+||++++||||+
T Consensus 82 ~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~-~-~~~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~ 159 (328)
T 1i6k_A 82 EVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG-K-EAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAE 159 (328)
T ss_dssp GCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT-C-SSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHhccccHHHHHHHHHHHHHHhc-c-CCCCchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHH
Confidence 999999999999999999999999999988755 2 68899999999999999999999999999999999999999999
Q ss_pred HHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhccCCCCCC
Q 014776 239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAG 318 (419)
Q Consensus 239 r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~~ 318 (419)
|||+.|| ++|++|++++++.+++||||+||++|||||+++..|+|+|+|+|++|++|||+|+||+.++
T Consensus 160 r~n~~yg------------~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~a~td~~~~ 227 (328)
T 1i6k_A 160 RFNKRYG------------ELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGT 227 (328)
T ss_dssp HHHHHHC------------SCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHHCCCCSSCC
T ss_pred HhCcccc------------cccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHhcCCCCccc
Confidence 9999998 6799999999766689999977678999999742234999999999999999999999988
Q ss_pred cccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCCcchHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHHHHHHHHH
Q 014776 319 LEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADGAAK 398 (419)
Q Consensus 319 i~~~~~~rp~v~~ll~i~~~~~~~~~eel~~~~~~l~~~dlK~~La~~I~~~L~pirer~~~~~~d~~~l~~iL~~Gaek 398 (419)
+.|++.++|+++++|.||++++++++++++++|.++++++||+.||++|+++|+|||+||+++++|++ |++||++|++|
T Consensus 228 ~~~~~~~~p~v~~~~~~~~~~~~~~~~el~~~~~g~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~-~~~il~~g~~~ 306 (328)
T 1i6k_A 228 IRYDKEAKPGISNLLNIYSTLSGQSIEELERQYEGKGYGVFKADLAQVVIETLRPIQERYHHWMESEE-LDRVLDEGAEK 306 (328)
T ss_dssp CCCBTTTBHHHHHHHHHHHHHHCCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTH-HHHHHHHHHHH
T ss_pred cccCCCCCcchhhHHHHHHHCCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhCChh-HHHHHHHHHHH
Confidence 88998888999999999999999999999999998999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q 014776 399 AADIADATLNNVYQAMGFLR 418 (419)
Q Consensus 399 Ar~iA~~tl~~Vr~a~Gl~~ 418 (419)
||++|++||++||++|||.+
T Consensus 307 a~~~a~~~~~~v~~~~g~~~ 326 (328)
T 1i6k_A 307 ANRVASEMVRKMEQAMGLGR 326 (328)
T ss_dssp HHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999964
No 5
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=8.7e-91 Score=700.25 Aligned_cols=326 Identities=36% Similarity=0.561 Sum_probs=307.6
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 014776 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (419)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~q 157 (419)
+++|||||+|||.+|||||+|++++|++||+.++++|+||||||+|++.+++++++++++++++|+|+||||+|++||+|
T Consensus 4 ~~~i~sG~~PTG~lHLGn~vg~l~~~~~lQ~~~~~~~~IaD~ha~~~~~d~~~i~~~~~~~~~~~lA~Gldp~k~~if~q 83 (348)
T 2yy5_A 4 MKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDPQKACLFLQ 83 (348)
T ss_dssp CCEEEEEECCCTTCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred CeEEEEeeCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEcChhhccCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEEC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-----CCCccchhhhhhHHHHHhhhhcccceecccCchHHHHHH
Q 014776 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-----GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 232 (419)
Q Consensus 158 S~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~-----~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~eL 232 (419)
|+|++|++++|+++|.+++++|+|+++||++.++.+ .+++++|+|+||+||||||++|++|+||||.||+||+|+
T Consensus 84 S~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel 163 (348)
T 2yy5_A 84 SDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLEL 163 (348)
T ss_dssp GGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHH
T ss_pred CcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHH
Confidence 999999999999999999999999999998765432 357899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhcc
Q 014776 233 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 312 (419)
Q Consensus 233 aRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~ 312 (419)
+||+|+|||+.|| ++|++|++++++.+++||||++|++|||||+++++|+|+|+|+|++|++|||+|+
T Consensus 164 ~Rdia~r~n~~yg------------~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~KI~~a~ 231 (348)
T 2yy5_A 164 TRDLAQRIQKKFK------------LKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQAT 231 (348)
T ss_dssp HHHHHHHHHHHHC------------CCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhhcc------------cccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHHHHhCC
Confidence 9999999999998 5799999999865589999977778999999854459999999999999999999
Q ss_pred CCCCCCcccCCCCCCccchHHHHHHhcCCCCHH---------HHHHHHhcCCcchHHHHHHHHHHHhhhHHHHHHHHHhc
Q 014776 313 TDSSAGLEFDNLERPECNNLLSIYQLISGKTKG---------EVAEECQNMNWGTFKPLLTDALIEHLHPIQVRYEEIMS 383 (419)
Q Consensus 313 Td~~~~i~~~~~~rp~v~~ll~i~~~~~~~~~e---------el~~~~~~l~~~dlK~~La~~I~~~L~pirer~~~~~~ 383 (419)
||+.+++.+++.++|+++++|.||++|++++++ +++++|.+++|++||+.||++|+++|+|||+||+++ +
T Consensus 232 td~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~g~~~~~~K~~La~~i~~~l~pire~~~~~-~ 310 (348)
T 2yy5_A 232 TDSFNKIRFASKTQPGVTNMLTILKALLKEPVNQSLTNQLGNDLEAYFSTKSYLDLKNALTEATVNLLVNIQRKREQI-S 310 (348)
T ss_dssp CCSSCCCSCCTTTCHHHHHHHHHHHHHTTSGGGHHHHHHHCSCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHSS-C
T ss_pred CCCccccccCCCCCCchhhHHHHHHhCChHhhhhhcccchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 999988999988899999999999999999999 999999989999999999999999999999999999 8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 014776 384 DSAYLDKVLADGAAKAADIADATLNNVYQAMGFL 417 (419)
Q Consensus 384 d~~~l~~iL~~GaekAr~iA~~tl~~Vr~a~Gl~ 417 (419)
|++ |++||++|++|||++|++||++||++|||.
T Consensus 311 d~~-~~~~l~~G~~~a~~~a~~t~~~v~~~~g~~ 343 (348)
T 2yy5_A 311 REQ-VFNCLQAGKNQAQATARTTLALFYDGFGLG 343 (348)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred Cch-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 888 999999999999999999999999999995
No 6
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=2.7e-89 Score=682.95 Aligned_cols=317 Identities=34% Similarity=0.598 Sum_probs=298.8
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 014776 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (419)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~q 157 (419)
..++||||+|||.+|||||+|+|++|++||+.++++|+||||||+|++.+++++++++++++++|+|+|+||+|++||+|
T Consensus 3 ~~~vysG~~PTg~lHlG~~lg~l~~~~~lQ~g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~q 82 (322)
T 3tzl_A 3 AMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQ 82 (322)
T ss_dssp -CCBEEEECCSSCCBHHHHHHTHHHHHHTTTTSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred ceEEEEccCCCccccHHHHHHHHHHHHHHhcCCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 36899999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchHHHHHHHHHHH
Q 014776 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (419)
Q Consensus 158 S~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~eLaRdia 237 (419)
|+|++|.+++|+++|.+++++|+|+++||++.... +++++|+|+||+||||||++|++|+||||.||+||++++||+|
T Consensus 83 S~~~~~~el~~~l~~~~~~~~l~r~~~~K~~~~~~--~~~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia 160 (322)
T 3tzl_A 83 SDVKEVMELYWILSQFTPMGLLERAHSYKDKVAKG--LSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIA 160 (322)
T ss_dssp GGCTHHHHHHHHHGGGCBHHHHHSCHHHHHHHHTT--CCCBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHhccCcHHHHHhhhHHHHHHccC--CCCchHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHH
Confidence 99999999999999999999999999999876653 5899999999999999999999999999999999999999999
Q ss_pred HHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhccCCCCC
Q 014776 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317 (419)
Q Consensus 238 ~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~ 317 (419)
+|||++|| ++|++|++++....++|||| +| +|||||++ |+|+|+|+|++|++|||+|+||+.+
T Consensus 161 ~r~n~~~g------------~~f~~P~~~~~~~~~~l~~l-~G-~KMSKS~~---n~I~L~d~p~~i~~KI~~a~td~~~ 223 (322)
T 3tzl_A 161 LKVNNEWG------------EIFTLPEARVNEEVAVVVGT-DG-AKMSKSYQ---NTIDIFSSEKTLKKQISSIVTDSTA 223 (322)
T ss_dssp HHHHHHHC------------SCSCCCEEECCCSSCCCBCT-TS-SBCCGGGT---CCCBSSCCHHHHHHHHHTCCCCCCC
T ss_pred HHhccccc------------CCCCCchhhhccccccccCC-CC-CcCCCCCC---CceecCCCHHHHHHHHHhccCCCcc
Confidence 99999998 57999999986555899999 67 79999985 6899999999999999999999987
Q ss_pred CcccCCCCCCccchHHHHHHhcC-CCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHHHHH
Q 014776 318 GLEFDNLERPECNNLLSIYQLIS-GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLAD 394 (419)
Q Consensus 318 ~i~~~~~~rp~v~~ll~i~~~~~-~~~~eel~~~~~--~l~~~dlK~~La~~I~~~L~pirer~~~~~~d~~~l~~iL~~ 394 (419)
.. ++++|+++++++|+++|+ ++++++++++|. ++++++||+.||++|+++|+|||+||+++++|+++|++||++
T Consensus 224 ~~---~~~~~~~~~v~~~~~~~~~~~~i~~l~~~~~~g~~~~~~~K~~lae~l~~~l~pir~~~~~~~~~~~~l~~il~~ 300 (322)
T 3tzl_A 224 LE---DPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKEAREKYNELLEKPSHLKEILDF 300 (322)
T ss_dssp TT---SCCCGGGCHHHHHHGGGCCHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred cc---CCCCCcchhHHHHHHHhCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHcCHHHHHHHHHH
Confidence 52 356899999999999995 567999999997 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q 014776 395 GAAKAADIADATLNNVYQAMGF 416 (419)
Q Consensus 395 GaekAr~iA~~tl~~Vr~a~Gl 416 (419)
|++|||++|++||++||++|||
T Consensus 301 G~~~a~~~a~~t~~~v~~~~g~ 322 (322)
T 3tzl_A 301 GATKARKIAQEKMQKIYEKIGL 322 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999997
No 7
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=3.2e-87 Score=671.81 Aligned_cols=320 Identities=44% Similarity=0.702 Sum_probs=293.5
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhc--ccEEEEEeCcceecCC--CCHHHHHHHHHHHHHHHHHcCcCCCceEE
Q 014776 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNS--YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNSKASV 154 (419)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~--~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~a~~lA~GlDp~k~~i 154 (419)
++|||||+|||.+|||||+|+|++|++||+. ++++|+||||||+|++ .+++.+++++++++++|+|+|+||+|++|
T Consensus 2 ~~vy~G~~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i 81 (337)
T 2el7_A 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL 81 (337)
T ss_dssp CCEEEEECSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence 5899999999999999999999999999998 8999999999999997 79999999999999999999999999999
Q ss_pred EEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchHHHHHHHH
Q 014776 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 234 (419)
Q Consensus 155 f~qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~eLaR 234 (419)
|+||+|++|.+++|+++|.+++++|+|+.+||++.+. .+++++|+|+||+||||||++|++|+||||.||+||++++|
T Consensus 82 ~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~r~~~--~~~~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~r 159 (337)
T 2el7_A 82 FVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--QETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTR 159 (337)
T ss_dssp EEGGGSTHHHHHHHHHHHTSBHHHHHTSHHHHHHTTS--SSCCBHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHH
T ss_pred EEcCcchhhHHHHHHHHccCCHHHHHHhHHHHHHhcc--CCCCChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHH
Confidence 9999999999999999999999999999999987643 36899999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhccCC
Q 014776 235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 314 (419)
Q Consensus 235 dia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~Td 314 (419)
|+|+|||+.|| .+|++|+++++.++++|||| +|++|||||++ |+|+|+|+|++|++||++|+||
T Consensus 160 dla~r~n~~~g------------~~f~~P~~~~~~~~p~l~gl-dG~~KMSKS~~---n~I~L~d~p~~i~~Ki~~a~td 223 (337)
T 2el7_A 160 EIARRFNHLFG------------ETFPEPQALLNPEAPRVPGI-DGKAKMSKSLG---NTIGLLEPEESIWQKIQHLPDD 223 (337)
T ss_dssp HHHHHHHHHHS------------SCCCCCEEECCTTSCCCBCT-TSSSBCCTTTT---CCCBSSSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHhhcC------------cccCCCeeecccccccccCC-CCccccCCCCC---CeeeCcCCHHHHHHHHHhCCCC
Confidence 99999999998 57999999998766799999 56779999985 5899999999999999999999
Q ss_pred CCCCcccCCCCCCccchHHHHHHhcCCC-CHHHHHHHHh--cCCcchHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHH
Q 014776 315 SSAGLEFDNLERPECNNLLSIYQLISGK-TKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 391 (419)
Q Consensus 315 ~~~~i~~~~~~rp~v~~ll~i~~~~~~~-~~eel~~~~~--~l~~~dlK~~La~~I~~~L~pirer~~~~~~d~~~l~~i 391 (419)
+.+++++++. +|++|++++||++|++. ++++++++|. +++++++|+.||+.|+++|+|+|++|+++++|+++|++|
T Consensus 224 ~~~~~~~~~~-~p~~~~v~~~~~~~t~~~~i~~l~~~~~~g~~~~~~~K~~La~~i~~~l~p~re~~~~~~~~~~~l~~i 302 (337)
T 2el7_A 224 PQRIRLSDPG-DPERTILFTYLSYFAPKDLVEALKEEYRKAGVGTYVVKRILFDHLMEALRPIRERAEALKKDPDYVMDA 302 (337)
T ss_dssp C--------------CHHHHHHHHHSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CccccccCCC-CCchhhHHHHHHHcCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHcCHHHHHHH
Confidence 9988888765 49999999999999987 9999999997 689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Q 014776 392 LADGAAKAADIADATLNNVYQAMGFL 417 (419)
Q Consensus 392 L~~GaekAr~iA~~tl~~Vr~a~Gl~ 417 (419)
|++|++|||++|++||++||++|||.
T Consensus 303 l~~G~~~a~~~a~~~~~~v~~~~g~~ 328 (337)
T 2el7_A 303 LLEGAKRARAVAQATMEEVREKVGLL 328 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999995
No 8
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=1.4e-86 Score=670.30 Aligned_cols=325 Identities=30% Similarity=0.430 Sum_probs=302.4
Q ss_pred CCCceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecC-CCCHHHHHHHHHHHHHHHHHcCcCCCceEE
Q 014776 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (419)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GlDp~k~~i 154 (419)
..++++|+||+|||.+|||||+|+|++|++||+.++++|+||||||+++ +.+++++++++++++++|+|+|+||+|++|
T Consensus 20 ~~~~~vysG~~PTG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i 99 (351)
T 1yi8_B 20 PARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTC 99 (351)
T ss_dssp -CCSEEEEEECCSSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEEE
T ss_pred CCCcEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcEE
Confidence 5678999999999999999999999999999999999999999999998 689999999999999999999999999999
Q ss_pred EEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCccchhhhhhHHHHHhhhhcccceecccCchHHHHHHH
Q 014776 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 233 (419)
Q Consensus 155 f~qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~eLa 233 (419)
|+||+|++|.++.|+|+|.+++++|+|+.+||++....+ .+++++|+|+||+||||||++|++|+||||.||+||++++
T Consensus 100 ~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~ 179 (351)
T 1yi8_B 100 VVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQT 179 (351)
T ss_dssp EEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHHH
T ss_pred EEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHHH
Confidence 999999999999999999999999999999999876553 3678999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhccC
Q 014776 234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 313 (419)
Q Consensus 234 Rdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA~T 313 (419)
||+|+|||+.|| .+|++|+++++. .++|||| ||++|||||++ |+|+|+|+|++|++||++|+|
T Consensus 180 rdia~r~n~~yg------------~~f~~P~~~~~~-~~~l~~l-dG~~KMSKS~~---n~I~L~d~p~~i~~Ki~~a~t 242 (351)
T 1yi8_B 180 REIVRRFNALYA------------PVLAEPQAQLSR-VPRLPGL-DGQAKMSKSLG---NAIALGDSADEVARKVMGMYT 242 (351)
T ss_dssp HHHHHHHHHHTC------------SCSCCCEEEECS-SCSCCCT-TSSSCCCTTTT---CCCBTTCCHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhcc------------cccCCCeeeeec-CccccCC-CCccccCCCCC---CeecCCCCHHHHHHHHHhcCC
Confidence 999999999998 569999998752 2799999 78779999985 589999999999999999999
Q ss_pred CCCCCcccCCCCCCccchHHHHHHhcCC--CCHHHHHHHHh--cCCcchHHHHHHHHHHHhhhHHHHHHHHHhcChHHHH
Q 014776 314 DSSAGLEFDNLERPECNNLLSIYQLISG--KTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLD 389 (419)
Q Consensus 314 d~~~~i~~~~~~rp~v~~ll~i~~~~~~--~~~eel~~~~~--~l~~~dlK~~La~~I~~~L~pirer~~~~~~d~~~l~ 389 (419)
|+.+.+.+++ +++++++++.++.+|+. +++++++++|. +++|++||+.||+.|+++|+|+|+||+++++|+++|+
T Consensus 243 d~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~l~ 321 (351)
T 1yi8_B 243 DPGHLRASDP-GRVEGNPVFTFLDAFDPDPARVQALKDQYRAGGLGDVKVKKHLIDVLNGVLAPIRTRRAEYERDPDAVL 321 (351)
T ss_dssp CTTCCSTTSC-CCCTTCTTHHHHHHHCSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcccccccCC-CCCccchHHHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHH
Confidence 9988777776 56778889999998863 35689999997 5789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 014776 390 KVLADGAAKAADIADATLNNVYQAMGFLR 418 (419)
Q Consensus 390 ~iL~~GaekAr~iA~~tl~~Vr~a~Gl~~ 418 (419)
+||++|++|||++|++||++||++|||.+
T Consensus 322 ~il~~G~~~a~~~a~~t~~~v~~~~g~~~ 350 (351)
T 1yi8_B 322 RFVTEGTARGREVAAQTLGQVRRAMRLFG 350 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 99999999999999999999999999964
No 9
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-86 Score=668.27 Aligned_cols=320 Identities=37% Similarity=0.576 Sum_probs=297.2
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecC-CCCHHHHHHHHHHHHHHHHHcCcCCCceEE
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GlDp~k~~i 154 (419)
..+++|+|++|||.+|||||+|+|++|++||+. ++++|+||||||+|+ +.+|+.+++++++++++|+|+|+||+|++|
T Consensus 11 ~~~~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~i 90 (340)
T 2g36_A 11 HHMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSVI 90 (340)
T ss_dssp -CCEEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSEE
T ss_pred CCCeEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeEE
Confidence 368999999999999999999999999999998 899999999999998 779999999999999999999999999999
Q ss_pred EEcCCcchhhHHHHHHhccccHHHHhhhhhHHH---HHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchHHHHH
Q 014776 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE---KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 231 (419)
Q Consensus 155 f~qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~---~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~e 231 (419)
|+||+|++|.++.|+++|.+++++|+|+.+||+ +.+. .+++++|+|+||+||||||++|++|+||||.||+||++
T Consensus 91 f~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~--~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~ 168 (340)
T 2g36_A 91 FVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNY--KDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIE 168 (340)
T ss_dssp EEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHTC---------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHH
T ss_pred EECCchHHHHHHHHHHHccCCHHHHHHhHHHHhHHHHhcc--CCCCChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHH
Confidence 999999999999999999999999999999998 5433 25789999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhc
Q 014776 232 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 311 (419)
Q Consensus 232 LaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA 311 (419)
++||+|+|||+.|| ++|++|++++.. .++|||| +|+ |||||++ |+|+|+|+|++|++||++|
T Consensus 169 l~rdia~r~n~~yg------------~~f~~P~~~~~~-~~~l~gl-dG~-KMSKS~~---n~I~L~dsp~~i~~Ki~~a 230 (340)
T 2g36_A 169 LTREIARRFNYLYD------------EVFPEPEAILSR-VPKLPGT-DGR-KMSKSYG---NIINLEISEKELEQTILRM 230 (340)
T ss_dssp HHHHHHHHHHHHSC------------CCCCCCEEEECC-SCCCCCT-TSS-CCCGGGT---CCCBTTCCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhhcc------------cccCCchhhhcc-ccccCCC-Ccc-ccCCCCC---CeEeeeCCHHHHHHHHHhC
Confidence 99999999999998 579999987743 3799999 675 9999985 6899999999999999999
Q ss_pred cCCCCCCcccCCCCCCccchHHHHHHhcCC--CCHHHHHHHHh--cCCcchHHHHHHHHHHHhhhHHHHHHHHHhcChHH
Q 014776 312 KTDSSAGLEFDNLERPECNNLLSIYQLISG--KTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAY 387 (419)
Q Consensus 312 ~Td~~~~i~~~~~~rp~v~~ll~i~~~~~~--~~~eel~~~~~--~l~~~dlK~~La~~I~~~L~pirer~~~~~~d~~~ 387 (419)
+||+.+.+.+++ ++|++|++++||++|++ +++++++++|. .+++++||+.||++|+++|+|||+||+++++|+++
T Consensus 231 ~td~~~~~~~~~-~~p~~~~v~~~~~~f~~~~~~ieel~~~~~~g~~~~~~~K~~La~~i~~~l~pire~~~~~~~~~~~ 309 (340)
T 2g36_A 231 MTDPARVRRSDP-GNPENCPVWKYHQAFDISEEESKWVWEGCTTASIGCVDCKKLLLKNMKRKLAPIWENFRKIDEDPHY 309 (340)
T ss_dssp CCCTTCSSTTSC-CCGGGCHHHHHHHHTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTH
T ss_pred CCCcccccccCC-CCCchhHHHHHHHHHCCCHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 999988888776 88999999999999985 34699999997 47899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 014776 388 LDKVLADGAAKAADIADATLNNVYQAMGFL 417 (419)
Q Consensus 388 l~~iL~~GaekAr~iA~~tl~~Vr~a~Gl~ 417 (419)
|++||++|++|||++|++||++||++|||.
T Consensus 310 ~~~il~~g~~~a~~~a~~t~~~v~~~~g~~ 339 (340)
T 2g36_A 310 VDDVIMEGTKKAREVAAKTMEEVRRAMNLM 339 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999994
No 10
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.3e-72 Score=571.62 Aligned_cols=286 Identities=20% Similarity=0.282 Sum_probs=247.2
Q ss_pred CCceEEEecCCCCcchhhhHHHHH-HHHHHHhhc--ccEEEEEeCcceecC-C-CCHHHHHHHHHHHHHHHHHcCcCCCc
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGAI-KNWIALQNS--YETLFFIVDLHAITL-P-YDTQQLSKATRETAAIYLACGIDNSK 151 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~i-k~~~~lQ~~--~~~~i~IaDlhA~t~-~-~~~~~i~~~~~~~~a~~lA~GlDp~k 151 (419)
+++++|||++|||.+|||||+|++ .+| ||+. ++++|+||||||+++ + .+++++++++++++++|+|+|+||+|
T Consensus 72 ~p~~i~sG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~k 149 (392)
T 3jxe_A 72 RGFFLYTGRGPSGPMHIGHIIPFFATKW--LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDK 149 (392)
T ss_dssp CCCEEEEEECCSSCCBHHHHHHHHHHHH--HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTS
T ss_pred CCeEEEeccCCCCchhHHHHHHHHHHHH--HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccc
Confidence 468999999999999999999986 778 8883 679999999999987 3 69999999999999999999999999
Q ss_pred eEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhc-ccceecccCchHHHH
Q 014776 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-QSDFVPVGEDQKQHL 230 (419)
Q Consensus 152 ~~if~qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~-~adivpvG~DQ~~h~ 230 (419)
++||+||+|++|.++.|.|++.++++++.++.+|+ +++++|+|+||+||||||+++ ++|+||||.||+||+
T Consensus 150 t~i~~qS~~~~~~~~~~~l~~~~t~~~~~~~~~~~--------~~~~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~hl 221 (392)
T 3jxe_A 150 TFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFT--------EQSKIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYW 221 (392)
T ss_dssp EEEEETTTSTHHHHHHHHHHHHSBHHHHHHHHCCC--------TTSBHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHHH
T ss_pred eEEEECchhHHHHHHHHHHHhhCCHHHHhhhhccC--------CCCchHHHHHHHHHHhhHHhhcCCceeecccchHHHH
Confidence 99999999999999999999999999999887654 578999999999999999999 699999999999999
Q ss_pred HHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhh
Q 014776 231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310 (419)
Q Consensus 231 eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~k 310 (419)
++|||+|+||| +++|++++.+ +||||+++++|||||+| +|+|+|+|+|++|++|||+
T Consensus 222 ~l~Rdla~r~n------------------~~~p~~l~~~---~l~gLdG~~~KMSKS~~--ns~I~L~D~p~~I~kKI~k 278 (392)
T 3jxe_A 222 RLQRDFAESLG------------------YYKTAALHSK---FVPSLTSLSGKMSASKP--ETAIYLTDSPEDVEKKVWK 278 (392)
T ss_dssp HHHHHHTGGGT------------------SCCCEEEEEC---CCCCSSCSSSCCCTTSG--GGCCBTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHcC------------------CCCCeeeecc---cccCCCCCccccccCCC--CCeeeCCCCHHHHHHHHHh
Confidence 99999999988 4679888864 99999655579999997 3799999999999999999
Q ss_pred -ccCCCCCCcccCC--CCCCccchHHHHHHhcC---CCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhhHHHHHHHHHh
Q 014776 311 -CKTDSSAGLEFDN--LERPECNNLLSIYQLIS---GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIM 382 (419)
Q Consensus 311 -A~Td~~~~i~~~~--~~rp~v~~ll~i~~~~~---~~~~eel~~~~~--~l~~~dlK~~La~~I~~~L~pirer~~~~~ 382 (419)
|+||+.+++++++ +++|+++++++||.+++ ++++++++++|. +++|++||+.||++|+++|+|||+||+++.
T Consensus 279 ~A~td~~~~~~~~~~~~~~P~~~~~~~~l~~~~~~~~~~~eel~~~~~~G~l~~gdlK~~lae~i~~~l~pirer~~~~~ 358 (392)
T 3jxe_A 279 FTLTGGRPTLKEQREKGGEPEKCVVFKWLEIFFEEDDKKLKERYYACKNGELTCGECKRYLISKIQEFLKEHQRRRKKAE 358 (392)
T ss_dssp CC--------------------CHHHHHHHHTTCCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hccCCCCcccccccccCCCCchhHHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988776654 68999999999999885 457899999997 489999999999999999999999999998
Q ss_pred cChHHHHHHHHHHHHH
Q 014776 383 SDSAYLDKVLADGAAK 398 (419)
Q Consensus 383 ~d~~~l~~iL~~Gaek 398 (419)
++|+++|..|+.+
T Consensus 359 ---~~v~~~l~~g~~~ 371 (392)
T 3jxe_A 359 ---KLVEKFKYTGKLA 371 (392)
T ss_dssp ---TSHHHHHTTSHHH
T ss_pred ---HHHHHHHHcCccc
Confidence 5899999999876
No 11
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=6.1e-69 Score=545.46 Aligned_cols=280 Identities=27% Similarity=0.362 Sum_probs=245.8
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCC--CHHHHHHHHHHHHHHHHHcCcCCCceE
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKAS 153 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~--~~~~i~~~~~~~~a~~lA~GlDp~k~~ 153 (419)
++++||||++|||.+|||||++++ +|+.+|+. ++|+|+||||||+|++. +++.+++++++++++|+||||||+|++
T Consensus 69 k~~~v~sG~~PTG~lHLGhyv~~~-~~~~lq~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~ 147 (372)
T 3a04_A 69 ERVAVLTGFMPSGKFHFGHKLTVD-QLIYLQKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTE 147 (372)
T ss_dssp CCCEEEEEECCCSCCBHHHHHHHH-HHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCE
T ss_pred CCCEEEeCcCCCcHhHHHHHHHHH-HHHHHHhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcc
Confidence 478999999999999999999865 66678865 89999999999999854 668899999999999999999999999
Q ss_pred EEEcCC-cchhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhh--------cccceecccC
Q 014776 154 VFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL--------YQSDFVPVGE 224 (419)
Q Consensus 154 if~qS~-v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~--------~~adivpvG~ 224 (419)
||+||+ +++|.++.|.+++.+++++++++.+ ..+.|.++||+||||||++ |++++||||+
T Consensus 148 if~qS~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------~~~~~~~~yP~lqAaDil~~~~d~~~gy~a~~VPVG~ 216 (372)
T 3a04_A 148 FYFQTNRGTPYFRLIQLFSGKVTAAEMEAIYG-----------ELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVGA 216 (372)
T ss_dssp EEEGGGSCHHHHHHHHHHTTSSCHHHHHHHHS-----------SCCHHHHHHHHHHHHHHHGGGSGGGTCCCCEEEEEEG
T ss_pred hhhhccchHHHHHHHHHHHhhhhHHHHhhhhh-----------ccCcccccCCcchhHHHhhhcCccccCccceecccch
Confidence 999999 5789999999999999999987632 4578999999999999999 4556999999
Q ss_pred chHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHH
Q 014776 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 304 (419)
Q Consensus 225 DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I 304 (419)
||+||+|||||||+|||+.|+ +++|..++.+ ++||| +| .|||||+| +|+|+|+|+|++|
T Consensus 217 DQ~~hleltRdiA~rfn~~~~--------------~~~P~~~~~~---~~pgl-dG-~KmS~S~~--ns~I~l~D~p~~i 275 (372)
T 3a04_A 217 DQDPHLRLTRDLADRMAGVVE--------------LERPASTYHK---LQPGL-DG-RKMSSSRP--DSTIFLTDPPEVA 275 (372)
T ss_dssp GGHHHHHHHHHHHHHTTTTSC--------------CCCCEEEEEC---CCBCT-TS-SBCCTTSG--GGSCBTTCCHHHH
T ss_pred hhHHHHHHHHHHHHHhcCccc--------------ccChhhhhhc---ccCCC-CC-CccCCCCC--CcccccCCCHHHH
Confidence 999999999999999998887 7889988875 89999 66 69999997 5999999999999
Q ss_pred HHHhhhccCCCCCCcccC--CCCCCccchHHHHH--Hhc-CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhhHHHHH
Q 014776 305 ANKIKRCKTDSSAGLEFD--NLERPECNNLLSIY--QLI-SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVR 377 (419)
Q Consensus 305 ~~KI~kA~Td~~~~i~~~--~~~rp~v~~ll~i~--~~~-~~~~~eel~~~~~--~l~~~dlK~~La~~I~~~L~pirer 377 (419)
++|||+|+||+..+.+.. .+++|+++++++++ .++ ++++++++.++|+ +++|++||+.|++.|+++|+|+|+|
T Consensus 276 ~kKI~ka~td~~~~~~~~~~~~G~p~~~~i~~~~l~~~~~d~~e~~ei~~~y~~G~l~~ge~K~~l~e~l~~~l~p~rer 355 (372)
T 3a04_A 276 RNKLFRALTGGRATAEEQRRLGGVPEVCSVYHMDLYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQSR 355 (372)
T ss_dssp HHHHHTCCCSCCSSHHHHHHHCCCGGGCHHHHHHHHTTCCSHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCccCCCCCcccccccCCCCchhhHHHHHHHccCCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998876543 36889999998753 333 3457899999996 6999999999999999999999999
Q ss_pred HHHHhcChHHHHHHH
Q 014776 378 YEEIMSDSAYLDKVL 392 (419)
Q Consensus 378 ~~~~~~d~~~l~~iL 392 (419)
|++. +++++++|
T Consensus 356 ~e~~---~~~~~kil 367 (372)
T 3a04_A 356 LEKA---KTIAWKLV 367 (372)
T ss_dssp HHHH---HHHHHTSC
T ss_pred HHHh---HHHHHHHh
Confidence 9865 34666654
No 12
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=5.6e-68 Score=538.35 Aligned_cols=282 Identities=20% Similarity=0.256 Sum_probs=243.5
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCC---CCHHHHHHHHHHHHHHHHHcCcCCCce
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~a~~lA~GlDp~k~ 152 (419)
++++||+||+|||.+||||.+..+.+|++||++ ++++|+||||||++++ .+++++++++.+++++|+|+|+||+|+
T Consensus 55 ~~~~iy~G~~PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~~a~G~dp~k~ 134 (373)
T 3vgj_A 55 RKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMENV 134 (373)
T ss_dssp SSCEEEEEECCCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCSTTE
T ss_pred CCceEEeCCCCCCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCChhhe
Confidence 367999999999999999954323368899997 7999999999999973 589999999999999999999999999
Q ss_pred EEEEcCCcc-hhhHHHHHHhc----cccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchH
Q 014776 153 SVFVQSHVR-AHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (419)
Q Consensus 153 ~if~qS~v~-~~~el~w~L~~----~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~ 227 (419)
+||+||+|+ +|++++|.+.+ .++++|+.++.+|+.+.. .+++++|+|+||+||||||++|++|+||||.||+
T Consensus 135 ~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~~---~~~~~~g~f~YPlLQaaDil~l~ad~vpgG~DQ~ 211 (373)
T 3vgj_A 135 QFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSE---GEENYCSQILYPCMQCADIFFLNVDICQLGIDQR 211 (373)
T ss_dssp EEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCCT---TSCCBTHHHHHHHHHHHHHHHTTCSEECCBGGGH
T ss_pred EEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhhc---cCCCChHHHHHHHHHHhcccccCCcEEEcchhhH
Confidence 999999998 89999998764 679999999988875321 2578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHH
Q 014776 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (419)
Q Consensus 228 ~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~K 307 (419)
+|++++||+|+|||+.|+ |..+.. ++||||+||++|||||+| +|+|+|+|+|++|++|
T Consensus 212 ~~l~l~Rdla~r~~~~~~-----------------~~~l~~---p~l~gL~dG~~KMSKS~~--~~~I~L~D~p~~i~~K 269 (373)
T 3vgj_A 212 KVNMLAREYCDIKKIKKK-----------------PVILSH---GMLPGLLEGQEKMSKSDE--NSAIFMDDSESDVNRK 269 (373)
T ss_dssp HHHHHHHHHHHHHTCSCC-----------------CEEEEB---CCCCCSSTTCCSCCSSST--TCCCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC-----------------ceEEeC---CeeecCCCCCCCCcCCCC--CCeeecCCCHHHHHHH
Confidence 999999999999996543 444554 499999889889999997 4899999999999999
Q ss_pred hhhccCCCCCCcccCCCCCCccchHHHHHHh--------c------------CCCCHHHHHHHHh--cCCcchHHHHHHH
Q 014776 308 IKRCKTDSSAGLEFDNLERPECNNLLSIYQL--------I------------SGKTKGEVAEECQ--NMNWGTFKPLLTD 365 (419)
Q Consensus 308 I~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~--------~------------~~~~~eel~~~~~--~l~~~dlK~~La~ 365 (419)
||+|+||+. +++.|+++.++++ | +++++++++++|. +++|++||++||+
T Consensus 270 I~kA~td~~---------~~~~n~~~~~~~~~~f~~~~~f~~~~~~~~g~~~~~~~~eel~~~~~~g~l~~~dlK~~lae 340 (373)
T 3vgj_A 270 IKKAYCPPN---------VIENNPIYAYAKSIIFPSYNEFNLVRKEKNGGDKTYYTLQELEHDYVNGFIHPLDLKDNVAM 340 (373)
T ss_dssp HHHSCCCTT---------CCTTCHHHHHHHHTHHHHHSSEEECCCGGGTCCEEECCHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHhCcCCCC---------CCCCCcchhhhhhhhhhhhhhhcccccccccCCcCcccHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 999999863 3445666655432 2 3468999999997 5899999999999
Q ss_pred HHHHhhhHHHHHHHHHhcChHHHHHHH
Q 014776 366 ALIEHLHPIQVRYEEIMSDSAYLDKVL 392 (419)
Q Consensus 366 ~I~~~L~pirer~~~~~~d~~~l~~iL 392 (419)
+|+++|+|||++|++..+.++++++|-
T Consensus 341 ~i~~~l~Pire~~~~~~~~~~~l~~v~ 367 (373)
T 3vgj_A 341 YINKLLQPVRDHFQNNIEAKNLLNEIK 367 (373)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhHHHHHHHHH
Confidence 999999999999998887777777663
No 13
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.2e-68 Score=542.09 Aligned_cols=282 Identities=21% Similarity=0.280 Sum_probs=247.7
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCC---CCHHHHHHHH-HHHH----HHHHHcCcC
Q 014776 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLP---YDTQQLSKAT-RETA----AIYLACGID 148 (419)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~---~~~~~i~~~~-~~~~----a~~lA~GlD 148 (419)
++++|+||+|||.+|||||++++++|++||++ ++++|+||||||+|++ .+++++++++ ++++ ++|+|+|+|
T Consensus 33 ~~~vy~G~~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~d 112 (375)
T 2cyc_A 33 PLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGGD 112 (375)
T ss_dssp CCBEEEEECCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTCC
T ss_pred CcEEEeCCCCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 68999999999999999999999999999998 8999999999999985 3899999999 8898 999999999
Q ss_pred CCceEEEEcCCcchhhHHHHHH----hccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccC
Q 014776 149 NSKASVFVQSHVRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGE 224 (419)
Q Consensus 149 p~k~~if~qS~v~~~~el~w~L----~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~ 224 (419)
|+|++||+||+|++|. ++|.+ ++.+++++|.|+.+||++. . .+++++|+|+||+||||||++|++|+||||.
T Consensus 113 p~k~~i~~qS~~~~~~-~~~~~~~~~~~~~~~~~m~~~~~~k~r~--~-~~~i~~g~f~YP~LQaaDil~~~~~~vp~G~ 188 (375)
T 2cyc_A 113 PKKVEFVLASEILEKG-DYWQTVIDISKNVTLSRVMRSITIMGRQ--M-GEAIDFAKLIYPMMQVADIFYQGVTIAHAGM 188 (375)
T ss_dssp GGGSEEEETHHHHTBH-HHHHHHHHHHTTSBHHHHHHTGGGGTCC--C-CTTCBTHHHHHHHHHHHHHHHTTCSEEEEEG
T ss_pred ccceEEEEcchhhhhh-HHHHHHHHHhceeEHHHHhccchhhhhc--c-CCCCChHHHHHHHHHHHHHHHhCCCeecccc
Confidence 9999999999999998 99998 9999999999999999643 2 2568999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhh---hh-CCccccccCCCCCccccCCceecCCCCcccccCCCC----------------CCcc
Q 014776 225 DQKQHLELTRELAERVNY---LY-GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG----------------LSKM 284 (419)
Q Consensus 225 DQ~~h~eLaRdia~r~n~---~~-g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg----------------~~KM 284 (419)
||+||++++||+|+|||+ .| | +.| +|..+.. ++||||++| ++||
T Consensus 189 DQ~~~i~l~rdla~r~n~~~~~~~g------------~~~-~~~~~~~---~~l~gL~g~~~~~~~~~~~~~~~~~~~KM 252 (375)
T 2cyc_A 189 DQRKAHVIAIEVAQKLRYHPIVHEG------------EKL-KPVAVHH---HLLLGLQEPPKWPIESEEEFKEIKAQMKM 252 (375)
T ss_dssp GGHHHHHHHHHHGGGCSSSCEEETT------------EEE-CCEEEEE---CCCBCSSCCSSSSCCSHHHHHHHHHHHBG
T ss_pred hHHHHHHHHHHHHHHhCCccccccc------------ccC-ccEEecc---ccccCCCCcccccccchhhhhhhhhhhcc
Confidence 999999999999999997 23 2 112 5666554 599999654 4899
Q ss_pred ccCCCCCCCceecCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcC---------------------CCC
Q 014776 285 SKSAPSDQSRINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS---------------------GKT 343 (419)
Q Consensus 285 SKS~p~~~s~I~L~Dspe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~~---------------------~~~ 343 (419)
|||+|+ |+|+|+|+|++|++|||+|+||+. +++.|+++.|+++|+ +++
T Consensus 253 SKS~~~--~~I~L~d~p~~i~~KI~~A~t~~~---------~~~~~~v~~~~~~~~f~~~~~~~~i~~~~~~gg~~~~~~ 321 (375)
T 2cyc_A 253 SKSKPY--SAVFIHDSPEEIRQKLRKAFCPAR---------EVRYNPVLDWVEYIIFREEPTEFTVHRPAKFGGDVTYTT 321 (375)
T ss_dssp GGSCGG--GSCBTTCCHHHHHHHHHHSCCCTT---------CCSSCHHHHHHHHTTTSSSSCCEEECCCGGGTCCEEESS
T ss_pred cCCCCC--CeeccCCCHHHHHHHHHHhcCCCC---------CCCCChHHHHHHHHhcCCCCcceeeecchhccCcCChhH
Confidence 999974 899999999999999999999873 456789999998774 457
Q ss_pred HHHHHHHHhc--CCcchHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHH
Q 014776 344 KGEVAEECQN--MNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDK 390 (419)
Q Consensus 344 ~eel~~~~~~--l~~~dlK~~La~~I~~~L~pirer~~~~~~d~~~l~~ 390 (419)
+++++++|.+ ++|++||+.||++|+++|+|+|++|++..+-.+.+++
T Consensus 322 ~~el~~~~~~g~~~~~~~K~~La~~l~~~l~pir~~~~~~~~~~~~~~~ 370 (375)
T 2cyc_A 322 FEELKRDFAEGKLHPLDLKNAVAEYLINLLEPIRRYFEKHPEPLELMRS 370 (375)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHh
Confidence 9999999984 8999999999999999999999999965333333433
No 14
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=1.8e-67 Score=530.62 Aligned_cols=268 Identities=19% Similarity=0.250 Sum_probs=227.0
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCC---CHHHHHHHHHHHHHHHHHcCcCCCce
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY---DTQQLSKATRETAAIYLACGIDNSKA 152 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~---~~~~i~~~~~~~~a~~lA~GlDp~k~ 152 (419)
.++++|+|++|||.+|||||++.+.+|++||+. ++++|+||||||++++. +++++++++++++++|+|+|+||+|+
T Consensus 39 ~~~~vy~G~~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~ 118 (348)
T 2j5b_A 39 RIFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGT 118 (348)
T ss_dssp CCEEEEEEECCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCCEEEeccCCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccce
Confidence 368999999999999999999999999999997 89999999999999853 89999999999999999999999999
Q ss_pred EEEEcCCc-chhhHHHHHHhc----cccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhc---ccceecccC
Q 014776 153 SVFVQSHV-RAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---QSDFVPVGE 224 (419)
Q Consensus 153 ~if~qS~v-~~~~el~w~L~~----~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~---~adivpvG~ 224 (419)
+||+||+| ++|. ++|.+.+ .++++++.++.+++.+. . .+++++|+|+||+||||||++| ++|+||||.
T Consensus 119 ~i~~qs~~~~~~~-~~~~~~~~v~~~~~~~~m~~~~~~~~r~--~-~~~i~~g~f~YP~lQaaDil~~~~~~~~~~~~G~ 194 (348)
T 2j5b_A 119 RFIWASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRN--E-SDCLKASQIFYPCMQAADVFELVPEGIDICQLGI 194 (348)
T ss_dssp EEEEHHHHHHHCH-HHHHHHHHHHHHHHHHHHTC--------------------CCHHHHHHHHHHHSSTTCCSEECCBG
T ss_pred EEEECCHhhhhhh-HHHHHHHHHHhheeHHHHHhhhhhhhhh--c-cCCcChHHHhhHHHHHHHHHHHhcCCCcEEEecc
Confidence 99999998 6777 8999775 78888888877777542 1 2578999999999999999999 999999999
Q ss_pred chHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHH
Q 014776 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 304 (419)
Q Consensus 225 DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I 304 (419)
||+||++++||+|+|||+. .|..+.. ++||||+||++|||||+| +|+|+|+|+|++|
T Consensus 195 DQ~~~i~l~Rdia~r~~~~------------------~p~~~~~---~~l~gL~dg~~KMSKS~~--~~~I~L~d~p~~i 251 (348)
T 2j5b_A 195 DQRKVNMLAIEYANDRGLK------------------IPISLSH---HMLMSLSGPKKKMSKSDP--QGAIFMDDTEQEV 251 (348)
T ss_dssp GGHHHHHHHHHHHHHTTCC------------------CCEEEEB---CCCCCTTCSSCCCSTTCG--GGSCBTTCCHHHH
T ss_pred ChHHHHHHHHHHHHHhCCC------------------CceeecC---ccccCCCCcccccccCCC--CCeEeecCCHHHH
Confidence 9999999999999999843 2555444 599999888889999986 4899999999999
Q ss_pred HHHhhhccCCCCCCcccCCCCCCccchHHHHHHh-------------cCCCCHHHHHHHHhcCCcchHHHHHHHHHHHhh
Q 014776 305 ANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQL-------------ISGKTKGEVAEECQNMNWGTFKPLLTDALIEHL 371 (419)
Q Consensus 305 ~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~-------------~~~~~~eel~~~~~~l~~~dlK~~La~~I~~~L 371 (419)
++|||+|+||+. .++ |+++.|+.+ ++++++++++++|.+++|++||+.||++|+++|
T Consensus 252 ~kKI~ka~td~~---------~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~el~~~~~~~~~~~~K~~la~~l~~~l 321 (348)
T 2j5b_A 252 SEKISRAYCTDE---------TFD-NPIFEYIKYLLLRWFGTLNLCGKIYTDIESIQEDFSSMNKRELKTDVANYINTII 321 (348)
T ss_dssp HHHHHHSCCCSS---------STT-CHHHHHHHHTHHHHHSCEEETTEEESSHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCCC---------CCC-CchHhHHHHhhhhhhcccccccCCcchHHHHHHHHcccCHHHHHHHHHHHHHHHH
Confidence 999999999874 356 678877765 356889999999999999999999999999999
Q ss_pred hHHHHHHHHH
Q 014776 372 HPIQVRYEEI 381 (419)
Q Consensus 372 ~pirer~~~~ 381 (419)
+|||++|++.
T Consensus 322 ~pir~~~~~~ 331 (348)
T 2j5b_A 322 DLVREHFKKP 331 (348)
T ss_dssp HHHHHHTTSG
T ss_pred HHHHHHHHhh
Confidence 9999999866
No 15
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=2.6e-67 Score=532.35 Aligned_cols=269 Identities=21% Similarity=0.286 Sum_probs=236.8
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCC---CCHHHHHHHHHHHHHHHHHcCcCCCce
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~a~~lA~GlDp~k~ 152 (419)
.++++|+||+|||.+|||| ++++.+|++||++ ++++|+||||||++++ .+++++++++++++++|+|+|+||+|+
T Consensus 34 ~~~~iy~G~~PTg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~ 112 (364)
T 2cya_A 34 ARIKGYIGYEPSGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERV 112 (364)
T ss_dssp SCCEEEEEECCCSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred CCCEEEeccCCCCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccce
Confidence 3689999999999999999 7889999999997 8999999999999985 699999999999999999999999999
Q ss_pred EEEEcCCcchhhHHHHH----HhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchHH
Q 014776 153 SVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ 228 (419)
Q Consensus 153 ~if~qS~v~~~~el~w~----L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~ 228 (419)
+||+||+|++| +++|. ++|.+++++|.|+.+|+++.. +..++++|+|+||+||||||++|++|+||||.||+|
T Consensus 113 ~i~~qS~~~~~-~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~--~~~~i~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~ 189 (364)
T 2cya_A 113 RFVDAEELASD-KDYWGLVIRVAKRASLARVRRALTIMGRRA--EEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQRK 189 (364)
T ss_dssp EEEEHHHHHTC-HHHHHHHHHHHHTSCHHHHHTTC------C--CGGGSCTHHHHHHHHHHHHHHHTTCSEEEEEGGGHH
T ss_pred EEEecchhhcc-hHHHHHHHHHHCcCcHHHHHcCchhhhhhc--CCCCccchhhhhHHHHHhhHHhcCCCEEeccchHHH
Confidence 99999999988 67888 999999999999999997653 224588999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCC---------------CCCccccCCCCCCC
Q 014776 229 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD---------------GLSKMSKSAPSDQS 293 (419)
Q Consensus 229 h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~d---------------g~~KMSKS~p~~~s 293 (419)
|++++||+|+||| +++|..++. ++||||++ |++|||||++ +|
T Consensus 190 ~~~l~rdla~r~~------------------~~~p~~l~~---~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~--~~ 246 (364)
T 2cya_A 190 AHMLARDVAEKLG------------------RKKPVAIHT---PIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP--ET 246 (364)
T ss_dssp HHHHHHHHHTTTT------------------CCCCEEEEE---CCCBCSSCC----------------CBCCSSSG--GG
T ss_pred HHHHHHHHHHHcC------------------CCCceeecc---ceeeCCCcccccccccccccccccccccCCCCC--CC
Confidence 9999999999988 356777665 49999964 3689999986 48
Q ss_pred ceecCCCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcC---------------------CCCHHHHHHHHh
Q 014776 294 RINLLDPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLIS---------------------GKTKGEVAEECQ 352 (419)
Q Consensus 294 ~I~L~Dspe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~~---------------------~~~~eel~~~~~ 352 (419)
+|+|+|+|++|++|||+|+||+. +++.|+++.|+++|+ ++++++++++|.
T Consensus 247 ~I~L~d~p~~i~~Ki~~a~td~~---------~~~~~~v~~~~~~~~f~~~~~~~~i~r~~~~G~~~~~~~~~el~~~~~ 317 (364)
T 2cya_A 247 AVFVVDSDDDIRRKIRKAYCPAK---------QVQGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYT 317 (364)
T ss_dssp SCBTTCCHHHHHHHHHTSCCCTT---------CCTTCHHHHHHHHTTTTSTTCCEECC--------CEESSHHHHHHHHH
T ss_pred EeeccCCHHHHHHHHHhCcCCCC---------CCCCCcHHHHHHHHhcccccCceeeeccccccCCCChHHHHHHHHHHh
Confidence 99999999999999999999874 345688999998765 248999999997
Q ss_pred c--CCcchHHHHHHHHHHHhhhHHHHHHHHH
Q 014776 353 N--MNWGTFKPLLTDALIEHLHPIQVRYEEI 381 (419)
Q Consensus 353 ~--l~~~dlK~~La~~I~~~L~pirer~~~~ 381 (419)
+ ++|++||+.||++|+++|+|+|++|++.
T Consensus 318 ~g~~~~~~lK~~la~~l~~~l~pir~~~~~~ 348 (364)
T 2cya_A 318 DGRLHPLDLKNAVAESLIEVVRPIRGAVLGD 348 (364)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4 8999999999999999999999999854
No 16
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=2.8e-68 Score=549.25 Aligned_cols=301 Identities=16% Similarity=0.230 Sum_probs=252.6
Q ss_pred CCceEEEecCCC-CcchhhhHHHHH-HHHHHHhh-c-ccEEEEEeCcceecC-C-CCHHHHHHHHHHHHHHHHHcCcCCC
Q 014776 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN-S-YETLFFIVDLHAITL-P-YDTQQLSKATRETAAIYLACGIDNS 150 (419)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGnylg~i-k~~~~lQ~-~-~~~~i~IaDlhA~t~-~-~~~~~i~~~~~~~~a~~lA~GlDp~ 150 (419)
+++++|+||+|| |.+|||||++++ .+| ||+ . +.++|+|||+||++. + .+++.+++++++++++|+|+|+||+
T Consensus 101 ~~~~vy~G~dPTag~LHLGh~v~~~~l~~--lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~ 178 (432)
T 2ip1_A 101 KPFFLYTGRGPSSDSMHLGHMIPFVFTKW--LQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPK 178 (432)
T ss_dssp CCCEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCeEEEEeecCCCCCccHHHHHHHHHHHH--HHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 368999999999 899999999977 566 998 3 679999999999887 3 5899999999999999999999999
Q ss_pred ceEEEEcCCcc--hhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCccchhhhhhHHHHHhhhh-----------cc
Q 014776 151 KASVFVQSHVR--AHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------YQ 216 (419)
Q Consensus 151 k~~if~qS~v~--~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQaADil~-----------~~ 216 (419)
|++||+||+|+ .+.++.|. ++||++++++.++.+ .+++++|+|+||+||||||++ |+
T Consensus 179 k~~i~~nSd~~~~~~~~~~~~---------v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~ 249 (432)
T 2ip1_A 179 NTFIFSDLQYMGGAFYETVVR---------VSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKT 249 (432)
T ss_dssp GEEEEEHHHHCSHHHHHHHHH---------HHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTC
T ss_pred ceEEEeCchhhhhhHHHHHHH---------HHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCC
Confidence 99999999997 67777773 578889988877654 467899999999999999999 57
Q ss_pred cceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCcee
Q 014776 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (419)
Q Consensus 217 adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~ 296 (419)
+++||||.||++|++++||+|+||| |++|..+.. ++||||+++++|||||.++ ++|+
T Consensus 250 ~~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~ll~gLdG~~~KMSKS~~n--saI~ 306 (432)
T 2ip1_A 250 PCLIPCAIDQDPYFRVCRDVADKLK------------------YSKPALLHS---RFFPALQGSTTKMSASDDT--TAIF 306 (432)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHHHHT------------------SCCCEEEEE---CCCCCTTC--------CGG--GCCB
T ss_pred ceEEEeccCcHHHHHHHHHHHHHhC------------------CCCceeecc---ccccCCCCCccccCCCCCC--CeEe
Confidence 9999999999999999999999988 567887665 4999995545799999863 6999
Q ss_pred cCCCHHHHHHHhhh-ccCCCCCCcccCC--CCCCccchHHHHHHhc--CCCCHHHHHHHHhc--CCcchHHHHHHHHHHH
Q 014776 297 LLDPKDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLI--SGKTKGEVAEECQN--MNWGTFKPLLTDALIE 369 (419)
Q Consensus 297 L~Dspe~I~~KI~k-A~Td~~~~i~~~~--~~rp~v~~ll~i~~~~--~~~~~eel~~~~~~--l~~~dlK~~La~~I~~ 369 (419)
|+|+|++|++||++ |+||+..+.++.+ +++|+++++++||++| +++++++|+++|.+ ++++++|+.||+.|++
T Consensus 307 L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~f~~~~~eieel~~~~~~G~~~~~~~K~~La~~i~~ 386 (432)
T 2ip1_A 307 MTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKLCIETLQE 386 (432)
T ss_dssp TTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhhhhcccCCccchhhccccCCCchHHHHHHHHHHHCCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999 9999876544433 3789999999999988 45678889999973 8999999999999999
Q ss_pred hhhHHHHHHHHHhcC----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014776 370 HLHPIQVRYEEIMSD----SAYLDKVLADGAAKAADIADATLNNVY 411 (419)
Q Consensus 370 ~L~pirer~~~~~~d----~~~l~~iL~~GaekAr~iA~~tl~~Vr 411 (419)
+|+|+|+||++++++ +.++++++.+|++|||++|.+||++|+
T Consensus 387 ~l~~~rer~~~~~~~~~~~~~~~~~~~~~g~~~a~~~a~~t~~~v~ 432 (432)
T 2ip1_A 387 FVKAFQERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTKQEKK 432 (432)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHSCCCCCCSCSCCSSCCC--------
T ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999988 788899999999999999999999986
No 17
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=4.9e-66 Score=527.99 Aligned_cols=274 Identities=18% Similarity=0.207 Sum_probs=242.4
Q ss_pred CCceEEEecCCCC-cchhhhHHHH-HHHHHHHhhc--ccEEEEEeCcceecC-CCCHHHHHHHHHHHHHHHHHcCcCCCc
Q 014776 77 VKKRIVSGVQPTG-SIHLGNYLGA-IKNWIALQNS--YETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK 151 (419)
Q Consensus 77 ~~~~i~tGi~PTG-~lHLGnylg~-ik~~~~lQ~~--~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GlDp~k 151 (419)
+++++|+|++||| .+|||||+|+ +.+| ||++ +.++|+|||+||+++ +.+++++++++++++++|+|+|+||+|
T Consensus 100 ~p~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k 177 (406)
T 3tze_A 100 RPFYLYTGRGPSSKTMHIGHTIPFLLCKY--MQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKL 177 (406)
T ss_dssp CCEEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred CCeEEEEeeCCCCCcccHHHHHHHHHHHH--HHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence 4789999999998 7999999998 4778 9997 467888999999865 679999999999999999999999999
Q ss_pred eEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCccchhhhhhHHHHHhhh--------hcccceecc
Q 014776 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQSDFVPV 222 (419)
Q Consensus 152 ~~if~qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQaADil--------~~~adivpv 222 (419)
++||.||+|++ .+..++++|+|+++|+++.+..+ .+++++|+|+||+|||||++ .+++|+|||
T Consensus 178 ~~i~~qs~~~~--------~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a~lvpv 249 (406)
T 3tze_A 178 TYIFSNVEASH--------HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVPA 249 (406)
T ss_dssp EEEEEHHHHGG--------GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCEEEEEE
T ss_pred eEEEeccHhHH--------HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCCeEEee
Confidence 99999999986 24457789999999999988776 46789999999999999955 467999999
Q ss_pred cCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCC-CccccCCCCCCCceecCCCH
Q 014776 223 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQSRINLLDPK 301 (419)
Q Consensus 223 G~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~-~KMSKS~p~~~s~I~L~Dsp 301 (419)
|.||+||++++||+|+||| +++|..+.. ++|||| +|. +|||||+| +|+|+|+|+|
T Consensus 250 G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gL-dG~~~KMSKS~~--~~~I~L~D~p 305 (406)
T 3tze_A 250 AVDQDPFFRLARDKAKALG------------------EKKPSSIYV---SLLPDL-KGVNRKMSASDP--NSSIYLDDAQ 305 (406)
T ss_dssp EGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TSCCCCSSCSCG--GGSCBTTCCH
T ss_pred ccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCC-CCCCcCCCCCCC--CCcccCCCCH
Confidence 9999999999999999988 577888765 499999 554 69999987 4899999999
Q ss_pred HHHHHHhhh-ccCCCCCCcccC--CCCCCccchHHHHHHhcC--CCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhhHH
Q 014776 302 DVIANKIKR-CKTDSSAGLEFD--NLERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPI 374 (419)
Q Consensus 302 e~I~~KI~k-A~Td~~~~i~~~--~~~rp~v~~ll~i~~~~~--~~~~eel~~~~~--~l~~~dlK~~La~~I~~~L~pi 374 (419)
++|++|||+ |+||+..++++. .+++|++||+++||++|+ ++++++++++|. +++|++||+.||++|+++|+||
T Consensus 306 ~~I~kKI~k~A~td~~~~~e~~~~~~g~p~v~~l~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~Lae~i~~~l~pi 385 (406)
T 3tze_A 306 DTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFVSRY 385 (406)
T ss_dssp HHHHHHHHHHCCCCCCCC-------CCCGGGCHHHHHHHHHCCCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCcccccccccCCCCCcccHHHHHHHHHcCCcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999887763 578999999999999996 467999999996 5899999999999999999999
Q ss_pred HHHHHHHhcC
Q 014776 375 QVRYEEIMSD 384 (419)
Q Consensus 375 rer~~~~~~d 384 (419)
|+||+++++|
T Consensus 386 rer~~~~~~d 395 (406)
T 3tze_A 386 QESRKRVTDD 395 (406)
T ss_dssp HHHHHHCCHH
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 18
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=3.8e-65 Score=551.36 Aligned_cols=291 Identities=21% Similarity=0.315 Sum_probs=250.1
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCC---CCHHHHHHHHHHHHHHHHHcCcCCCce
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~---~~~~~i~~~~~~~~a~~lA~GlDp~k~ 152 (419)
++++||+||+|||.+||||++....+|++||+. ++++|+||||||++++ .+++++++++++++++|+|+|+||+|+
T Consensus 39 ~~~~vy~G~~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~ 118 (690)
T 3p0j_A 39 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKV 118 (690)
T ss_dssp TTEEEEEEECCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCceEEeeecCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHHcCCChHHe
Confidence 368999999999999999965433368899997 7999999999999973 589999999999999999999999999
Q ss_pred EEEEcCC-cchhhHHHHHHh----ccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchH
Q 014776 153 SVFVQSH-VRAHVELMWLLS----SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (419)
Q Consensus 153 ~if~qS~-v~~~~el~w~L~----~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~ 227 (419)
+||+||+ +++|++++|.+. +.+++++|.++.+++.+.. +++++|+|+||+||||||++|++|+||||.||+
T Consensus 119 ~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~----~~i~~g~f~YPlLQAaDil~~~ad~vpvG~DQ~ 194 (690)
T 3p0j_A 119 LFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTE----GTLTAAQVLYPLMQCCDIFFLKADICQLGLDQR 194 (690)
T ss_dssp EEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-----------CCCCCSCSSHHHHHHHHHHHTTCSEECCBGGGH
T ss_pred EEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhcc----CCCchhhHhhHHHHHHHHHhhCCCEEeccccHH
Confidence 9999999 589999999874 5799999999999986432 248999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHH
Q 014776 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (419)
Q Consensus 228 ~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~K 307 (419)
||++++||+|+|||+.|+ |..+.. ++||||+||++|||||++ +|+|+|+|+|++|++|
T Consensus 195 ~~l~l~Rdla~r~n~~~~-----------------p~~l~~---~~l~gL~dG~~KMSKS~~--~~~I~L~D~p~~i~kK 252 (690)
T 3p0j_A 195 KVNMLAREYCDLIGRKLK-----------------PVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMEDTEEDVARK 252 (690)
T ss_dssp HHHHHHHHHHHHTTCCCC-----------------CEEEEB---CCCCCSSTTCSSCBTTBG--GGSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC-----------------ceEeec---CeeecCCCCCcCCCCCCC--CCeeeccCCHHHHHHH
Confidence 999999999999996443 444444 599999889889999986 3899999999999999
Q ss_pred hhhccCCCCCC--cccCCCCC----CccchHHHHHHhc--------------CCCCHHHHHHHHh--cCCcchHHHHHHH
Q 014776 308 IKRCKTDSSAG--LEFDNLER----PECNNLLSIYQLI--------------SGKTKGEVAEECQ--NMNWGTFKPLLTD 365 (419)
Q Consensus 308 I~kA~Td~~~~--i~~~~~~r----p~v~~ll~i~~~~--------------~~~~~eel~~~~~--~l~~~dlK~~La~ 365 (419)
||+|+||+... .+...++. ++.|++|+||.++ +++++++++++|. +++|++||+.|++
T Consensus 253 I~~A~td~~~~~~~~~~d~g~~~~~~~~~~v~~y~~~~~~~~~~~~~~~~~~~~~~~eel~~~y~~G~l~~~dlK~~lae 332 (690)
T 3p0j_A 253 IRQAYCPRVKQSASAITDDGAPVATDDRNPVLDYFQCVVYARPGAAATIDGTTYATYEDLEQAFVSDEVSEDALKSCLID 332 (690)
T ss_dssp HHTSCCCSSCCCCCCCCTTCCCCCCSSCCHHHHHHHHTTTTSTTCCEEETTEEESSHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHhCcCCCcccccccccCCCCcccCCCCchHHHHHHHhhcccccccccccCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99999998652 11122233 5889999999986 3468999999997 5899999999999
Q ss_pred HHHHhhhHHHHHHHHHhcChHHHHHHHH
Q 014776 366 ALIEHLHPIQVRYEEIMSDSAYLDKVLA 393 (419)
Q Consensus 366 ~I~~~L~pirer~~~~~~d~~~l~~iL~ 393 (419)
+|+++|+|||+||+++.++++++++|++
T Consensus 333 ~i~~~L~Pirer~~~~~~~~~~l~~v~~ 360 (690)
T 3p0j_A 333 EVNALLEPVRQHFASNEEAHELLEAVKS 360 (690)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchhhHHHHHHHHH
Confidence 9999999999999999999999999876
No 19
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=2.3e-65 Score=520.30 Aligned_cols=280 Identities=16% Similarity=0.215 Sum_probs=245.5
Q ss_pred CCceEEEecCCCCcchhhhHHHH-HHHHHHHhhc--ccEEEEEeCcceecCC-CCHHHHHHHHHHHHHHHHHcCcCCCce
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGA-IKNWIALQNS--YETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKA 152 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~-ik~~~~lQ~~--~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~a~~lA~GlDp~k~ 152 (419)
+++++|+|++|||.+|||||+|+ +.+| ||++ +.++|+|+|+||++++ .+++++++++++++++|+|+|+||+|+
T Consensus 81 ~~~~vysG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt 158 (386)
T 3hzr_A 81 KPTFIFIQKYPQKEVALEEYITLEFARY--LQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKT 158 (386)
T ss_dssp CCEEEEEEECCCSSCBGGGHHHHHHHHH--HHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGE
T ss_pred CCeEEEeccCCCCCccHHHHHHHHHHHH--HHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcce
Confidence 46899999999999999999999 5788 9996 4678889999999985 799999999999999999999999999
Q ss_pred EEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCccchhhhhhHHHHHhhh--------hcc-cceecc
Q 014776 153 SVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQ-SDFVPV 222 (419)
Q Consensus 153 ~if~qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQaADil--------~~~-adivpv 222 (419)
+||+||+|++ .|..++++|.|+++|+++.+..+ .+++++|+|+||+|||||++ .++ +|+|||
T Consensus 159 ~i~~qS~~~~--------~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~~a~~Vpv 230 (386)
T 3hzr_A 159 FIYTDYQYFG--------KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPARCLVLD 230 (386)
T ss_dssp EEEEHHHHHH--------HHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSCCEEEEEE
T ss_pred EEEeccHHHH--------HHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCCCcccccc
Confidence 9999999986 55667889999999999988766 46799999999999999776 456 999999
Q ss_pred cCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHH
Q 014776 223 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 302 (419)
Q Consensus 223 G~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe 302 (419)
|.||+||+++|||+|+||| +++|..+.. ++|||| +|..|||||++ +|+|+|+|+|+
T Consensus 231 G~DQ~~hl~l~Rdla~r~n------------------~~~p~~l~~---~~l~gL-dG~~KMSKSd~--~~~I~L~D~p~ 286 (386)
T 3hzr_A 231 SIKNVQFHSIIDQIATTLN------------------FIQPTVLFH---KMVPLL-SGVTKFDIPSD--HNSILLSDNAK 286 (386)
T ss_dssp EGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TCTTCCCCCCT--TTSCBTTCCHH
T ss_pred ccchHHHHHHHHHHHHHcC------------------CCCceEeec---CeeeCC-CCCCccCcCCC--CCeeecCCCHH
Confidence 9999999999999999998 467765543 599999 55459999986 59999999999
Q ss_pred HHHHHhhh-ccCCCCCCccc--CCCCCCccchHHHHHHhcC--CCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhhHHH
Q 014776 303 VIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQ 375 (419)
Q Consensus 303 ~I~~KI~k-A~Td~~~~i~~--~~~~rp~v~~ll~i~~~~~--~~~~eel~~~~~--~l~~~dlK~~La~~I~~~L~pir 375 (419)
+|++|||+ |+||+..+.+. ..+++|+++++++||.+++ ++++++++++|. +++|++||+.||++|+++|+|||
T Consensus 287 ~i~kKI~k~A~t~g~~Td~~~~~~~g~p~~~~v~~~~~~~~~~~~~~eei~~~~~~G~l~~g~~K~~lae~i~~~l~pir 366 (386)
T 3hzr_A 287 QVERKINKLAFSGGRNTTEEHKKLGGQCDIDVSFQLLNIFSSDNAQVKDVEEKYSKGELLSGELKKIVSASMKDFIVAYD 366 (386)
T ss_dssp HHHHHHHHTSCCCCCSSHHHHHTTCCCGGGCHHHHHHHHHCSCHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCcccccccCCCCccchHHHHHHHHcCChhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999766432 2468899999999999985 457899999996 68999999999999999999999
Q ss_pred HHHHHHhcChHHHHHHH
Q 014776 376 VRYEEIMSDSAYLDKVL 392 (419)
Q Consensus 376 er~~~~~~d~~~l~~iL 392 (419)
+||+++.+| .|++..
T Consensus 367 er~~~~~~~--~~~~~~ 381 (386)
T 3hzr_A 367 AKKKPITTA--YLKAYI 381 (386)
T ss_dssp HHHTTCCHH--HHHHHH
T ss_pred HHHHHHHHH--HHHHHh
Confidence 999998753 455443
No 20
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=2.3e-64 Score=514.33 Aligned_cols=281 Identities=20% Similarity=0.269 Sum_probs=235.0
Q ss_pred CCceEEEecCCC-CcchhhhHHHHH-HHHHHHhhc--ccEEEEEeCcceecC--CCCHHHHHHHHHHHHHHHHHcCcCCC
Q 014776 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQNS--YETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDNS 150 (419)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGnylg~i-k~~~~lQ~~--~~~~i~IaDlhA~t~--~~~~~~i~~~~~~~~a~~lA~GlDp~ 150 (419)
+++++|+|++|| |.+|||||++++ .+| ||++ +.++|+|||+|+++. ..+++++++++++++++|+|+|+||+
T Consensus 73 ~~~~vy~G~~PTa~~lHlGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~ 150 (393)
T 3hv0_A 73 ELFYLYTGRGPSSESLHVGHLVPFLFTKY--LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPE 150 (393)
T ss_dssp CCCEEEEEECCSSSSCBSTTHHHHHHHHH--HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCeEEEeCCCCCCCCccHHHHHHHHHHHH--HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 368999999999 689999999998 667 9997 357999999999654 46999999999999999999999999
Q ss_pred ceEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCccchhhhhhHHHHHhhh-------hc-c---cc
Q 014776 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL-------LY-Q---SD 218 (419)
Q Consensus 151 k~~if~qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQaADil-------~~-~---ad 218 (419)
|++||.||+|++. +..++.++.|+.+++++.+..+ .+++++|+|+||+||||||+ ++ + ++
T Consensus 151 kt~i~~ns~~~~~--------~~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~ 222 (393)
T 3hv0_A 151 LTFIFTNLEYIAE--------LYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHC 222 (393)
T ss_dssp TEEEEEHHHHHHH--------HHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCE
T ss_pred ceEEEECCHHHHH--------HHHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCce
Confidence 9999999999751 1334568889999988887765 46899999999999999996 33 3 47
Q ss_pred eecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecC
Q 014776 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (419)
Q Consensus 219 ivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~ 298 (419)
+||||.||++|++++||+|+||| +++|..+.. ++||||+++++|||||.+ +|+|+|+
T Consensus 223 lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gLdG~~~KMSKS~~--nsaI~L~ 279 (393)
T 3hv0_A 223 LVPHAIDQDPYFRMVRDVAPRLG------------------YLKPSSIHS---IFLPSLQGSQTKMSASVQ--NSSIFVN 279 (393)
T ss_dssp EEEEEGGGHHHHHHHHHHTGGGT------------------CCCCEEEEE---CCCCC---------------CCCCBTT
T ss_pred ecccccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCCCCCCcCCCCCCC--CCeEecc
Confidence 89999999999999999999987 577887765 499999544479999997 4799999
Q ss_pred CCHHHHHHHhhh-ccCCCCCCcccCC--CCCCccchHHHHHHhc--CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHhh
Q 014776 299 DPKDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHL 371 (419)
Q Consensus 299 Dspe~I~~KI~k-A~Td~~~~i~~~~--~~rp~v~~ll~i~~~~--~~~~~eel~~~~~--~l~~~dlK~~La~~I~~~L 371 (419)
|+|++|++|||+ |+||+..++++++ +++|+++++++||+++ +++++++++++|. +++|++||+.|+++|+++|
T Consensus 280 D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~eei~~~y~~G~l~~g~~K~~lae~i~~~l 359 (393)
T 3hv0_A 280 DNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVDVSWQYLRFLMEDDEKLEEIGKKYSSGEMLSGEIKSILVQELVKLT 359 (393)
T ss_dssp CCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhccCCCCccccccccCCCCcchhHHHHHHHHHcCChhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999 9999998887764 7899999999999998 5668999999997 6899999999999999999
Q ss_pred hHHHHHHHHHhcChHHHHHHH
Q 014776 372 HPIQVRYEEIMSDSAYLDKVL 392 (419)
Q Consensus 372 ~pirer~~~~~~d~~~l~~iL 392 (419)
+|+|+||+++++| .|++++
T Consensus 360 ~pirer~~~~~~d--~~~~~~ 378 (393)
T 3hv0_A 360 KNHQKNREAINDD--VIAKFT 378 (393)
T ss_dssp HHHHHHHHTCCHH--HHHHHH
T ss_pred HHHHHHHHHHHHh--HHHHHh
Confidence 9999999999875 477776
No 21
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=8.8e-65 Score=517.69 Aligned_cols=287 Identities=18% Similarity=0.227 Sum_probs=220.2
Q ss_pred CCceEEEecCCCC-cchhhhHHHHH-HHHHHHhhc--ccEEEEEeCcceecC-CCCHHHHHHHHHHHHHHHHHcCcCCCc
Q 014776 77 VKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQNS--YETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK 151 (419)
Q Consensus 77 ~~~~i~tGi~PTG-~lHLGnylg~i-k~~~~lQ~~--~~~~i~IaDlhA~t~-~~~~~~i~~~~~~~~a~~lA~GlDp~k 151 (419)
+++++|+|++||| .+|||||++++ .+| ||++ +.++|+|+|+|++++ +.+++++++++++++++|+|+|+||+|
T Consensus 77 ~~~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k 154 (395)
T 3i05_A 77 QPFYLYTGRGPSSESMHMGHLIPFMFTKW--LQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPEL 154 (395)
T ss_dssp CCEEEEEEECCCSSCCBGGGSHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTS
T ss_pred CCeEEEEeecCCCccchHHHHHHHHHHHH--HHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 4789999999999 69999999984 677 9997 457888999977665 679999999999999999999999999
Q ss_pred eEEEEcCCcchhhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCccchhhhhhHHHHH--------hhhhcc----cc
Q 014776 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMAS--------DILLYQ----SD 218 (419)
Q Consensus 152 ~~if~qS~v~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQaA--------Dil~~~----ad 218 (419)
+.||.||+|++ .|+ ..+.+|.|+++|+++.+..+ .+++++|+|+||+|||| ||++++ +|
T Consensus 155 t~i~~ns~~~~----~~~----~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~~ 226 (395)
T 3i05_A 155 TFIFRDFDYMG----CMY----RTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFC 226 (395)
T ss_dssp EEEEEHHHHTT----TSH----HHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEE
T ss_pred eEEEEcCHHHH----HHH----HHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCce
Confidence 99999999975 222 45778999999999988765 46799999999999999 677898 99
Q ss_pred eecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecC
Q 014776 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (419)
Q Consensus 219 ivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~ 298 (419)
+||||.||+||++++||+|+||| +++|..+.. ++||||+++++||||| + +|+|+|+
T Consensus 227 lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gLdG~~~KMSKS-~--~~~I~L~ 282 (395)
T 3i05_A 227 LIPQAIDQDPYFRLTRDIAPRLG------------------YLKPAVIHS---KFFPGLSGPKGKMSSS-S--GTAVLLT 282 (395)
T ss_dssp EEEEEGGGHHHHHHHHHTHHHHT------------------CCCCEEEEE---CCCCCC----------------CCBTT
T ss_pred EEEeccchHHHHHHHHHHHHHcC------------------CCCceeecc---ccccCCCCCcccCCCC-C--CCcccCC
Confidence 99999999999999999999988 356777665 4999995444799999 4 6999999
Q ss_pred CCHHHHHHHhhh-ccCCCCCCccc--CCCCCCccchHHHHHHhc--CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHhh
Q 014776 299 DPKDVIANKIKR-CKTDSSAGLEF--DNLERPECNNLLSIYQLI--SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHL 371 (419)
Q Consensus 299 Dspe~I~~KI~k-A~Td~~~~i~~--~~~~rp~v~~ll~i~~~~--~~~~~eel~~~~~--~l~~~dlK~~La~~I~~~L 371 (419)
|+|++|++|||+ |+||+..++++ .++++|++|++++||++| +++++++++++|. +++|++||+.|+++|+++|
T Consensus 283 D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~~~~~~~~~~~~~~~~~eei~~~y~~G~l~~g~lK~~lae~i~~~l 362 (395)
T 3i05_A 283 DTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVDVPIQWLSFFLEDDEELARVKKEYMLGRIMTGEVKKLLINTITAIT 362 (395)
T ss_dssp CCHHHHHHHHC----------------------CCHHHHHHHHHCCCSHHHHHHCC-------CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhccCCCccchhhcccCCCCcchhHHHHHHHHHcCChhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999 99999877654 567899999999999999 5668999999997 5899999999999999999
Q ss_pred hHHHHHHHHHhcChHHHHHHHH----HHHHHH
Q 014776 372 HPIQVRYEEIMSDSAYLDKVLA----DGAAKA 399 (419)
Q Consensus 372 ~pirer~~~~~~d~~~l~~iL~----~GaekA 399 (419)
+|||+||+++.+| .|++.+. .|+++|
T Consensus 363 ~pirer~~~~~~d--~~~~~~~~~~~~~~~~~ 392 (395)
T 3i05_A 363 KTHQEKRKLVTDE--DVQLFTSTRIMGPAKKA 392 (395)
T ss_dssp HHHHHHHTTCCHH--HHHHHHSCCCCTTTTC-
T ss_pred HHHHHHHHHHHHh--HHHHHhChhcccchhhh
Confidence 9999999998864 5666663 666665
No 22
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=3.8e-64 Score=518.42 Aligned_cols=280 Identities=21% Similarity=0.279 Sum_probs=245.0
Q ss_pred CCceEEEecCCC-CcchhhhHHHHH-HHHHHHhhc--ccEEEEEeCcceecCC--CCHHHHHHHHHHHHHHHHHcCcCCC
Q 014776 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQNS--YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNS 150 (419)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGnylg~i-k~~~~lQ~~--~~~~i~IaDlhA~t~~--~~~~~i~~~~~~~~a~~lA~GlDp~ 150 (419)
+++++|+|++|| |.+|||||++++ .+| ||++ +.++|+|+|+||++.+ .+++++++|+++++++|+|+||||+
T Consensus 90 ~p~~vytG~dPTagsLHLGH~v~~~~l~~--lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpe 167 (451)
T 3foc_A 90 HPIYIYTGRGPSSGALHLGHLLPFIFTKY--LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPD 167 (451)
T ss_dssp CCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCeEEEecCCCCCCCccHHHHHHHHHHHH--HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 468999999999 889999999988 778 9997 4578899999999864 5999999999999999999999999
Q ss_pred ceEEEEcCCcch---hhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhc------------
Q 014776 151 KASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY------------ 215 (419)
Q Consensus 151 k~~if~qS~v~~---~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~------------ 215 (419)
|++||+||+|++ +.++.|.|++.++++++.+..+|+ +++++|+|+||+||||||+.+
T Consensus 168 kt~i~~nSd~~~~~~~~~~l~~L~r~~Tv~~m~~~~~f~--------~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~ 239 (451)
T 3foc_A 168 KTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFS--------NDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPL 239 (451)
T ss_dssp GEEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHCCC--------SSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBC
T ss_pred ceEEEeCchhhcchhHHHHHHHHHhhCCHHHHHhhcccC--------CCCchHHHhhHHHHHHHHHHhhcCCCCcccccc
Confidence 999999999965 677788888888888887775543 578999999999999999833
Q ss_pred ------------------------------ccc-----------------eecccCchHHHHHHHHHHHHHHhhhhCCcc
Q 014776 216 ------------------------------QSD-----------------FVPVGEDQKQHLELTRELAERVNYLYGGRK 248 (419)
Q Consensus 216 ------------------------------~ad-----------------ivpvG~DQ~~h~eLaRdia~r~n~~~g~~~ 248 (419)
++| +||||+||+||+|||||||++||
T Consensus 240 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn------- 312 (451)
T 3foc_A 240 PVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMG------- 312 (451)
T ss_dssp C-------------------------CCCCHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTT-------
T ss_pred ccccccchhhhhhhhhhccccccchhhhhhhcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhC-------
Confidence 334 99999999999999999999988
Q ss_pred ccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhh-ccCCCCCCccc--CCCC
Q 014776 249 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR-CKTDSSAGLEF--DNLE 325 (419)
Q Consensus 249 ~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~k-A~Td~~~~i~~--~~~~ 325 (419)
+++|..+.. ++||||+++++|||||++ +|+|+|+|+|++|++|||+ |+||+..++++ .+++
T Consensus 313 -----------~~~p~~~~~---~~l~gLdG~~~KMSKS~~--ns~I~l~D~p~~I~kKI~k~A~Td~~~~~~~~~~~~g 376 (451)
T 3foc_A 313 -----------HPKNAYLLG---KFLPGLQGSGTKMSASDP--NSAIYLTDTPAQIKNKINRYAFSGGRDTEEEHRAFGA 376 (451)
T ss_dssp -----------SCCCEEEEE---CCCCBTTBTTCCCCTTCG--GGSCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHTTCC
T ss_pred -----------CCCCeeecC---CcccCCCCCCCccCCCCC--CCeeeecCCHHHHHHHHhhhccCCCCccchhcccCCC
Confidence 467777654 599999655579999997 3799999999999999999 99999887765 5679
Q ss_pred CCccchHHHHHHhcC--CCCHHHHHHHHh--cCCcchHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHH
Q 014776 326 RPECNNLLSIYQLIS--GKTKGEVAEECQ--NMNWGTFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKV 391 (419)
Q Consensus 326 rp~v~~ll~i~~~~~--~~~~eel~~~~~--~l~~~dlK~~La~~I~~~L~pirer~~~~~~d~~~l~~i 391 (419)
+|++|++++||.+|+ ++++++++++|. +++|++||+.|++.|+++|+|||+||+++++| .|++.
T Consensus 377 ~p~~~~v~~~l~~f~~~~~~~eel~~~y~~G~l~~g~lK~~Lae~i~~~l~pirer~~~l~~d--~v~~f 444 (451)
T 3foc_A 377 DLSVDVSVRYLEVFMKDDAELEKLKADYKTGKLLTGEVKATLIGILQGLIKEHAERRDKVDTT--MIESF 444 (451)
T ss_dssp CTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHTCCHH--HHHHH
T ss_pred CcchhhHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHh
Confidence 999999999999994 558899999997 58999999999999999999999999998753 45554
No 23
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=4.4e-63 Score=494.27 Aligned_cols=265 Identities=24% Similarity=0.344 Sum_probs=236.9
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCC-CHHHHHHHHHHHHHHHHHcCcCCCceEE
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASV 154 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~a~~lA~GlDp~k~~i 154 (419)
+++++|+|++|||.+||||+ +++.+|++||+. ++++|+||||||++++. +++++++++++++++|+|+|+||+|++|
T Consensus 31 ~~~~vy~G~~PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~i 109 (323)
T 2cyb_A 31 EKPRAYVGYEPSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAKF 109 (323)
T ss_dssp SCCEEEEEECCCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCEE
T ss_pred CCCEEEECcCCCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 36799999999999999985 678999999996 89999999999999865 9999999999999999999999999999
Q ss_pred EEcCCcc---hhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchHHHHH
Q 014776 155 FVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 231 (419)
Q Consensus 155 f~qS~v~---~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~e 231 (419)
|+||+|+ +|.++.|.++|.++++++.|+.+++.+ .. +..++|+|+||+||||||+++++|+||||.||++|++
T Consensus 110 ~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~--~~--~~~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~ 185 (323)
T 2cyb_A 110 VLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSR--RK--EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHM 185 (323)
T ss_dssp EEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCS--CS--SSCBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred EEcchhccchHHHHHHHHHhCccCHHHHhccchhhcc--cc--CCCCchhhhhHHHHHHHHHhcCCCEEEechhhHHHHH
Confidence 9999996 789999999999999999998776532 11 3459999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhhc
Q 014776 232 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 311 (419)
Q Consensus 232 LaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~kA 311 (419)
++|++|++|| ++.|..++.+ +||+| +| +||||| + +|+|+|+|+|++|++||++|
T Consensus 186 l~rdla~~~~------------------~~~p~~l~~p---ll~~l-~G-~KMSKS-~--~n~I~l~d~p~~i~~Ki~~a 239 (323)
T 2cyb_A 186 LARENLPRLG------------------YSSPVCLHTP---ILVGL-DG-QKMSSS-K--GNYISVRDPPEEVERKIRKA 239 (323)
T ss_dssp HHHHHGGGGT------------------CCCCEEEEEC---CCBCT-TS-SBCCTT-T--TCSCBTTCCHHHHHHHHHTS
T ss_pred HHHHHHHhcC------------------CCCceEEecC---cccCC-CC-CcccCC-c--CceeCCCCCHHHHHHHHHhc
Confidence 9999999988 3457777654 99999 56 799999 4 58999999999999999999
Q ss_pred cCCCCCCcccCCCCCCccchHHHHHHhc--------------------CCCCHHHHHHHHhc--CCcchHHHHHHHHHHH
Q 014776 312 KTDSSAGLEFDNLERPECNNLLSIYQLI--------------------SGKTKGEVAEECQN--MNWGTFKPLLTDALIE 369 (419)
Q Consensus 312 ~Td~~~~i~~~~~~rp~v~~ll~i~~~~--------------------~~~~~eel~~~~~~--l~~~dlK~~La~~I~~ 369 (419)
+||+. .++.|++++|++++ +++++++++++|.+ ++|++||+.|+++|++
T Consensus 240 ~td~~---------~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~G~~~~~~~~~~l~~~~~~g~~~~~~~K~~la~~i~~ 310 (323)
T 2cyb_A 240 YCPAG---------VVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHPLDLKIAVAKYLNM 310 (323)
T ss_dssp CCCTT---------CCTTCHHHHHHHHTHHHHHSCEEECCCGGGTCCEEESSHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred CCCCC---------CCCcChHHHHHHHHhccccCceeEechhhcCCCCCcccHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99873 34568999999987 34589999999973 8999999999999999
Q ss_pred hhhHHHHHHHHH
Q 014776 370 HLHPIQVRYEEI 381 (419)
Q Consensus 370 ~L~pirer~~~~ 381 (419)
+|+|||+||++.
T Consensus 311 ~l~pir~~~~~~ 322 (323)
T 2cyb_A 311 LLEDARKRLGVS 322 (323)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHhcc
Confidence 999999999753
No 24
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=1.5e-61 Score=481.61 Aligned_cols=257 Identities=25% Similarity=0.315 Sum_probs=228.2
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCC-CHHHHHHHHHHHHHHHHHcCcCCCceEE
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASV 154 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~-~~~~i~~~~~~~~a~~lA~GlDp~k~~i 154 (419)
.++++|+||+|||.+|||| ++++.+|++||+. ++++|+|||+||++++. +++++++++++++++|+|+|+| +.|
T Consensus 27 ~~~~vy~G~~PTg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d---~~~ 102 (314)
T 2zp1_A 27 DEKSAYIGFEPSGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK---AKY 102 (314)
T ss_dssp SSEEEEEEECCCSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC---CEE
T ss_pred CCCEEEEccCCCCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC---eEE
Confidence 3689999999999999999 7889999999997 89999999999999864 8999999999999999999998 789
Q ss_pred EEcCCcchhhHHHHH----HhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchHHHH
Q 014776 155 FVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230 (419)
Q Consensus 155 f~qS~v~~~~el~w~----L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~~h~ 230 (419)
++||+|+++ +++|. ++|.+++++|.|+.+|+++. . +..++|+|+||+||||||++|++|+||||.||++|+
T Consensus 103 ~~qs~~~~~-~~~~~~~~~l~~~~t~~~l~~~~~~~~~~--~--~~~~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~ 177 (314)
T 2zp1_A 103 VYGSEFQLD-KDYTLNVYRLALKTTLKRARRSMELIARE--D--ENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIH 177 (314)
T ss_dssp EEGGGTTTS-HHHHHHHHHHHHHSCHHHHHHHTTTTSCC--C--SSCCTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHHH
T ss_pred EECChhhcc-hHHHHHHHHHHCcCcHHHHhccchhhhhc--c--CCCCchhhhhHHHHHHhHHhhCCCEEEcChhHHHHH
Confidence 999999866 45555 99999999999999998643 2 234999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHHhhh
Q 014776 231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310 (419)
Q Consensus 231 eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~KI~k 310 (419)
+|+|++++ ++|..+.. ++|||| +|++||||| + +|+|+|+|+|++|++|||+
T Consensus 178 ~l~R~i~~----------------------~~~~~~~~---~~l~~l-~G~~KMSKS-~--~~~I~L~d~~~~i~~KI~~ 228 (314)
T 2zp1_A 178 MLARELLP----------------------KKVVCIHN---PVLTGL-DGEGKMSSS-K--GNFIAVDDSPEEIRAKIKK 228 (314)
T ss_dssp HHHHHHSS----------------------SCCEEEEE---CCCBCT-TSSSBCCTT-T--TCSCBTTCCHHHHHHHHHH
T ss_pred HHHHHhcC----------------------CCcEEeec---cccccC-CcccccCCC-C--cceecCCCCHHHHHHHHHh
Confidence 99999863 23555554 599999 587899999 4 5899999999999999999
Q ss_pred ccCCCCCCcccCCCCCCccchHHHHHHhc-----------------CCCCHHHHHHHHh--cCCcchHHHHHHHHHHHhh
Q 014776 311 CKTDSSAGLEFDNLERPECNNLLSIYQLI-----------------SGKTKGEVAEECQ--NMNWGTFKPLLTDALIEHL 371 (419)
Q Consensus 311 A~Td~~~~i~~~~~~rp~v~~ll~i~~~~-----------------~~~~~eel~~~~~--~l~~~dlK~~La~~I~~~L 371 (419)
|+||+. .++.|++++||+++ ++++++||+++|. +++|++||+.||++|+++|
T Consensus 229 a~td~~---------~~~~~~~~~~~~~~~~~~~~i~r~~k~g~~~~~~~~eei~~~~~~g~~~~~~~K~~la~~i~~~l 299 (314)
T 2zp1_A 229 AYCPAG---------VVEGNPIMEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMYLKNAVAEELIKIL 299 (314)
T ss_dssp SCCCTT---------CCTTCHHHHHHHHHCCSSEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCC---------CCCCCcHHHHHHHHhcCCcceeehhhccCCCCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 999874 34568999999987 4468999999997 4799999999999999999
Q ss_pred hHHHHHHHH
Q 014776 372 HPIQVRYEE 380 (419)
Q Consensus 372 ~pirer~~~ 380 (419)
+|+|++|+.
T Consensus 300 ~p~r~~~~~ 308 (314)
T 2zp1_A 300 EPIRKRLLE 308 (314)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHc
Confidence 999999984
No 25
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=3.1e-62 Score=503.96 Aligned_cols=280 Identities=19% Similarity=0.279 Sum_probs=242.7
Q ss_pred CCceEEEecCCC-CcchhhhHHHHH-HHHHHHhh-c-ccEEEEEeCcceecCC-CCHHHHHHHHHHHHHHHHHcCcCCCc
Q 014776 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN-S-YETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK 151 (419)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGnylg~i-k~~~~lQ~-~-~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~a~~lA~GlDp~k 151 (419)
+++++|+||+|| |.+|||||++++ .+| ||+ . +.++|+|||+||++++ .+++++++|+++++++|+|+|+||+|
T Consensus 107 ~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k 184 (437)
T 1r6u_A 107 KPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINK 184 (437)
T ss_dssp CCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred CCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 468999999999 899999999987 567 888 3 6899999999999985 68999999999999999999999999
Q ss_pred eEEEEcCCcch----hhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCccchhhhhhHHHHHhhhh-----------c
Q 014776 152 ASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------Y 215 (419)
Q Consensus 152 ~~if~qS~v~~----~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQaADil~-----------~ 215 (419)
++||.||+|++ +.++.| +++||+++++++++.+ .+++++|+|+||+||||||++ |
T Consensus 185 t~i~~nSd~~~~l~~~~~l~~---------~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~ 255 (437)
T 1r6u_A 185 TFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTD 255 (437)
T ss_dssp EEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCC
T ss_pred eEEEechhhhhhHHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccC
Confidence 99999999985 555544 5678888888877664 467899999999999999999 7
Q ss_pred ccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCce
Q 014776 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (419)
Q Consensus 216 ~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 295 (419)
++|+||||.||++|++++||+|+||| |++|..+.. ++||||+++++|||||.+ +|+|
T Consensus 256 ~~~lVpvG~DQ~~~i~l~Rdla~r~~------------------~~~P~~l~~---pll~gLdG~~~KMSKS~~--nsaI 312 (437)
T 1r6u_A 256 IQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPALQGAQTKMSASDP--NSSI 312 (437)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEETTEEEEECCTTSS--SSCC
T ss_pred CceEEEeehhhHHHHHHHHHHHHHhC------------------CCCceEeec---ccccCCCCCccccCCCCC--CCee
Confidence 78999999999999999999999987 567887665 499999543479999996 4699
Q ss_pred ecCCCHHHHHHHhhh-ccCCCCCCcccCC--CCCCccchHHHHHHhcC--CCCHHHHHHHHhc--CCcchHHHHHHHHHH
Q 014776 296 NLLDPKDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGTFKPLLTDALI 368 (419)
Q Consensus 296 ~L~Dspe~I~~KI~k-A~Td~~~~i~~~~--~~rp~v~~ll~i~~~~~--~~~~eel~~~~~~--l~~~dlK~~La~~I~ 368 (419)
+|+|+|++|++||++ |+||+..++++.+ +++|+++++++|+++|+ ++++++|+++|.+ ++++++|+.||+.|+
T Consensus 313 ~L~D~p~~I~kKI~~ya~td~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K~~LAe~i~ 392 (437)
T 1r6u_A 313 FLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQ 392 (437)
T ss_dssp BTTCCHHHHHHHHHHTSCCCBCSSHHHHHHHCBCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCSTTHHHHHHHHHH
T ss_pred eccCCHHHHHHHhhccccCCCccchhhccccCCCccHHHHHHHHHHHcCCHhHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 999999999999999 9999976655433 37899999999999885 4578889999973 899999999999999
Q ss_pred HhhhHHHHHHHHHhcChHHHHHHH
Q 014776 369 EHLHPIQVRYEEIMSDSAYLDKVL 392 (419)
Q Consensus 369 ~~L~pirer~~~~~~d~~~l~~iL 392 (419)
++|+|+|+||+++.++ .+++.+
T Consensus 393 ~~l~~~rer~~~~~~~--~~~~~~ 414 (437)
T 1r6u_A 393 PLIAEHQARRKEVTDE--IVKEFM 414 (437)
T ss_dssp HHHHHHHHHHHTCCHH--HHHHHT
T ss_pred HHHHHHHHHHHHHHHH--HHHHhc
Confidence 9999999999998753 355543
No 26
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-60 Score=488.69 Aligned_cols=278 Identities=23% Similarity=0.230 Sum_probs=228.5
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecC-CC-CHHHHHHHH----HHHHHHHHHcCcCCC
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PY-DTQQLSKAT----RETAAIYLACGIDNS 150 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~-~~-~~~~i~~~~----~~~~a~~lA~GlDp~ 150 (419)
++++||+||+|||.+|||||+++++.|..+|..++++|+|+||||+|+ +. +++.++.++ ..+.+.|+|+|+||+
T Consensus 38 ~p~~vy~G~~PTG~LHlG~~~~al~~~~~~q~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~ 117 (394)
T 2dlc_X 38 RHLKLYWGTAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIE 117 (394)
T ss_dssp SCCEEEEEECCCSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 456999999999999999999999999888877999999999999997 43 556666664 345557899999999
Q ss_pred ceEEEEcCCc---chhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchH
Q 014776 151 KASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (419)
Q Consensus 151 k~~if~qS~v---~~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~ 227 (419)
++.||+||+| ++|.++.|.++|.++++++.|+.+.+ .+ . .+++++|+|+||+||||||++|++|+||||.||+
T Consensus 118 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~--~r-~-~~~~~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~ 193 (394)
T 2dlc_X 118 KLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADV--VK-Q-VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQR 193 (394)
T ss_dssp TCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTT--SC-C-CSSCCTHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred HcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhh--hc-c-cCCccceeeechhHhhccHhhhCCCEEecCccHH
Confidence 9999999999 57889999999999999999886532 12 1 2578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHH
Q 014776 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (419)
Q Consensus 228 ~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~K 307 (419)
+|++++|+++++|| +++|..++.+ +||+| +|++|||||++ +++|+|+|+|++|++|
T Consensus 194 ~~~~l~rdl~~r~~------------------~~~p~~l~~p---ll~gl-~~G~KMSKS~~--ns~I~L~D~p~~i~kK 249 (394)
T 2dlc_X 194 KIFVLAEENLPSLG------------------YKKRAHLMNP---MVPGL-AQGGKMSASDP--NSKIDLLEEPKQVKKK 249 (394)
T ss_dssp HHHHHHHHHGGGGT------------------CCCCEEEEEC---CCCCC-C------------CCSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC------------------CCCCEEEecc---cccCC-CCCCcCCCCCC--CCEEeccCCHHHHHHH
Confidence 99999999999987 4568888864 99999 53379999996 4679999999999999
Q ss_pred hhhccCCCCCCcccCCCCCCccchHHHHHH----------------------------hcCCCCHHHHHHHHhc--CCcc
Q 014776 308 IKRCKTDSSAGLEFDNLERPECNNLLSIYQ----------------------------LISGKTKGEVAEECQN--MNWG 357 (419)
Q Consensus 308 I~kA~Td~~~~i~~~~~~rp~v~~ll~i~~----------------------------~~~~~~~eel~~~~~~--l~~~ 357 (419)
||+|+||+. +++.|+++.|++ .++++++++|+++|.+ ++|+
T Consensus 250 I~ka~Td~~---------~~~d~~v~~y~k~~~~p~~~~~~~~g~~~~~i~~~~~~~~~~~~~~i~el~~~~~~g~~~~~ 320 (394)
T 2dlc_X 250 INSAFCSPG---------NVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITYKSFEEMKLAFKEEKLSPP 320 (394)
T ss_dssp HHHSCCCTT---------CCSSCHHHHHHHHTHHHHHHTSSSTTCCCEEECCCGGGSCCEEESSHHHHHHHHHTTSSCHH
T ss_pred HHHhcCCCC---------CCCcchHHHHHHhhhcchhhhcccCCCceEEEeccccccCcCCHHHHHHHHHHHhcCCCCHH
Confidence 999999884 334456666643 3456799999999984 8999
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHhcChHHHHHHHHHH
Q 014776 358 TFKPLLTDALIEHLHPIQVRYEEIMSDSAYLDKVLADG 395 (419)
Q Consensus 358 dlK~~La~~I~~~L~pirer~~~~~~d~~~l~~iL~~G 395 (419)
+||+.||++|+++|+|+|++|+ ++++ ++++++.|
T Consensus 321 ~~K~~La~~i~~~l~p~r~~~~---~~~~-~~~~~~~~ 354 (394)
T 2dlc_X 321 DLKIGVADAINELLEPIRQEFA---NNKE-FQEASEKG 354 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HCHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH---CCHH-HHHHHhcc
Confidence 9999999999999999999988 3443 77777655
No 27
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=1.9e-61 Score=503.77 Aligned_cols=280 Identities=19% Similarity=0.279 Sum_probs=240.7
Q ss_pred CCceEEEecCCC-CcchhhhHHHHH-HHHHHHhh-c-ccEEEEEeCcceecCC-CCHHHHHHHHHHHHHHHHHcCcCCCc
Q 014776 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN-S-YETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK 151 (419)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGnylg~i-k~~~~lQ~-~-~~~~i~IaDlhA~t~~-~~~~~i~~~~~~~~a~~lA~GlDp~k 151 (419)
+++++|+||+|| |.+|||||+|++ .+| ||+ . +.++|+|||+||++++ .+++++++|+++++++|+|+|+||+|
T Consensus 154 ~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k 231 (477)
T 1r6t_A 154 KPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINK 231 (477)
T ss_dssp CCEEEEEEECCCTTCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTS
T ss_pred CCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 468999999999 899999999987 677 887 3 7889999999999974 68999999999999999999999999
Q ss_pred eEEEEcCCcch----hhHHHHHHhccccHHHHhhhhhHHHHHHhhC-CCCccchhhhhhHHHHHhhhh-----------c
Q 014776 152 ASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------Y 215 (419)
Q Consensus 152 ~~if~qS~v~~----~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~-~~~~~~g~l~YPvLQaADil~-----------~ 215 (419)
++||.||+|++ +.++.| +|+||++++++.++.+ .+++++|+|+||+||||||++ |
T Consensus 232 ~~i~~nsd~~~~l~~~~~~~~---------~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~ 302 (477)
T 1r6t_A 232 TFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTD 302 (477)
T ss_dssp EEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCC
T ss_pred eEEEechhhhcccHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhccccC
Confidence 99999999985 555554 5667777777766554 367899999999999999999 5
Q ss_pred ccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCce
Q 014776 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (419)
Q Consensus 216 ~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 295 (419)
++|+||||.||++|++++||+|+||| |++|..+.. ++||||+++++|||||.++ |+|
T Consensus 303 ~~~~VpvG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---pll~gLdG~~~KMSKS~~n--saI 359 (477)
T 1r6t_A 303 IQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPALQGAQTKMSASDPN--SSI 359 (477)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEETTEEEEECCTTSTT--CCC
T ss_pred CceeEeccccHHHHHHHHHHHHHHhC------------------CCCceeeec---ccccCCCCCccccCCCCCC--Cce
Confidence 78999999999999999999999987 567887665 4999995434799999963 699
Q ss_pred ecCCCHHHHHHHhhh-ccCCCCCCcccCC--CCCCccchHHHHHHhcC--CCCHHHHHHHHhc--CCcchHHHHHHHHHH
Q 014776 296 NLLDPKDVIANKIKR-CKTDSSAGLEFDN--LERPECNNLLSIYQLIS--GKTKGEVAEECQN--MNWGTFKPLLTDALI 368 (419)
Q Consensus 296 ~L~Dspe~I~~KI~k-A~Td~~~~i~~~~--~~rp~v~~ll~i~~~~~--~~~~eel~~~~~~--l~~~dlK~~La~~I~ 368 (419)
+|+|+|++|++||++ |+||+..++++.+ +++|+++++++||.+|+ ++++++|+++|.+ ++++++|+.||+.|+
T Consensus 360 ~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~~~v~~~l~~ft~~~~eieel~~~~~~G~~~~~~~K~~Lae~i~ 439 (477)
T 1r6t_A 360 FLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQ 439 (477)
T ss_dssp BTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTTCHHHHHHHHHCCCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred eecCCHHHHHHHhccccccCCccchhhccccCCCchHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999999999999999 9999976554433 37899999999999885 4578889999973 899999999999999
Q ss_pred HhhhHHHHHHHHHhcChHHHHHHH
Q 014776 369 EHLHPIQVRYEEIMSDSAYLDKVL 392 (419)
Q Consensus 369 ~~L~pirer~~~~~~d~~~l~~iL 392 (419)
++|+|||+||+++.++ .|++.+
T Consensus 440 ~~l~pirer~~~~~~~--~v~~~~ 461 (477)
T 1r6t_A 440 PLIAEHQARRKEVTDE--IVKEFM 461 (477)
T ss_dssp HHHHHHHHHHTTCCHH--HHHHHT
T ss_pred HHHHHHHHHHHHHHHH--HHHHHh
Confidence 9999999999998753 355443
No 28
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=1e-60 Score=493.00 Aligned_cols=286 Identities=19% Similarity=0.220 Sum_probs=242.2
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecC-C---------CCHHHHHHHHHHHHHHHHH
Q 014776 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLA 144 (419)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~~~~a~~lA 144 (419)
.++++|+||+|||. +|||||++ +.+|++||+. |+++|+|||+||+++ | .+++++++|+.++.+.+.
T Consensus 36 ~~~~vy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql~- 113 (432)
T 1h3f_A 36 RPLTVKLGADPTRPDLHLGHAVV-LRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAG- 113 (432)
T ss_dssp SCCEEEEEECTTCCSCBHHHHHH-HHHHHHHHHTTCEEEEEECCCC---------------------HHHHHHHHHHHT-
T ss_pred CCcEEEEcccCCCCCCchhhHHH-HHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHHHHHHHHHHHHHHH-
Confidence 46899999999996 99999995 7899999997 899999999999997 3 247888988887777654
Q ss_pred cCcC--CCceEEEEcCCcchhhHHHHHH--hccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhccccee
Q 014776 145 CGID--NSKASVFVQSHVRAHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 220 (419)
Q Consensus 145 ~GlD--p~k~~if~qS~v~~~~el~w~L--~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adiv 220 (419)
+|+| |+|++||+||+|+++..+.|++ ++.++++++.+..+|+++... .+++++|+|+||+||||||++|++|+|
T Consensus 114 ~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~--~~~is~~ef~YPlLQaaDil~l~~~l~ 191 (432)
T 1h3f_A 114 KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEA--GIPISLHELLYPFAQAYDSVAIRADVE 191 (432)
T ss_dssp TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHT--TCCCBGGGGTHHHHHHHHHHHHTCSEE
T ss_pred HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhc--CCCCCccccchhhHHhhhhhhcCccEE
Confidence 8899 9999999999998887777776 899999999888899977643 267899999999999999999999999
Q ss_pred cccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCC
Q 014776 221 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 300 (419)
Q Consensus 221 pvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Ds 300 (419)
|||.||++|++++||+++|||. ..|..+.. ++||++ ||++|||||.+ |+|+|+|+
T Consensus 192 ~gG~DQ~~ni~l~rdlarr~~~------------------~~~~~lt~---pll~gl-dG~~KMSKS~~---n~I~L~ds 246 (432)
T 1h3f_A 192 MGGTDQRFNLLVGREVQRAYGQ------------------SPQVCFLM---PLLVGL-DGREKMSKSLD---NYIGLTEP 246 (432)
T ss_dssp EEEGGGHHHHHHHHHHHHHTTC------------------CCCEEEEE---CCCBCT-TSSSBCCGGGT---CCCBTTSC
T ss_pred EechHHHHHHHHHHHHHHHhCC------------------CCceEeec---ccccCC-CCccccCcCCC---CeeCCCCC
Confidence 9999999999999999999873 22334443 599999 78779999984 69999999
Q ss_pred HHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHhcCCcchHHHHHHHHHHHhhh----HHHH
Q 014776 301 KDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQNMNWGTFKPLLTDALIEHLH----PIQV 376 (419)
Q Consensus 301 pe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~~~~~~eel~~~~~~l~~~dlK~~La~~I~~~L~----pire 376 (419)
|++|++||+++.+ ++++.||++|++.+++|+++.+.+ +|+++|+.||+.|+++++ |||+
T Consensus 247 p~~i~~Ki~~~~d----------------~~v~~~l~~ft~~~~eei~~~~~~-~~~~~K~~LA~~i~~~l~~~~~pire 309 (432)
T 1h3f_A 247 PEAMFKKLMRVPD----------------PLLPSYFRLLTDLEEEEIEALLKA-GPVPAHRVLARLLTAAYALPQIPPRI 309 (432)
T ss_dssp HHHHHHHHHTSCG----------------GGHHHHHHHHCCCCHHHHHHHHHH-CHHHHHHHHHHHHHHHHHSSSCCSCC
T ss_pred HHHHHHHHhCCCc----------------cHHHHHHHHcCCCCHHHHHHHHhh-ChHHHHHHHHHHHHHHHhcccchHHH
Confidence 9999999999853 478999999999999999998887 999999999999999999 9999
Q ss_pred HHHHHhcChHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 014776 377 RYEEIMSDSAYLDKVLAD----GAAKAADIADATLNNV 410 (419)
Q Consensus 377 r~~~~~~d~~~l~~iL~~----GaekAr~iA~~tl~~V 410 (419)
||+++.+ ++||++||++ |.+.|++ |.+.-+.+
T Consensus 310 rr~~~~~-~~~v~~il~~~~~~g~~~a~~-a~~~~~~~ 345 (432)
T 1h3f_A 310 DRAFYES-LGYAWEAFGRDKEAGPEEVRR-AEARYDEV 345 (432)
T ss_dssp SHHHHHH-TTCCGGGTTCCTTCSCHHHHH-HHHHHHHH
T ss_pred HHHHhhc-hHHHHHHHhhccccCHHHHHH-HHHHHHHh
Confidence 9999999 9999999999 8888764 44444444
No 29
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=4.3e-60 Score=480.91 Aligned_cols=265 Identities=23% Similarity=0.225 Sum_probs=220.9
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecC-CCCHHHHHHHHH---H--HHHHHHHcCcCCC
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATR---E--TAAIYLACGIDNS 150 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~-~~~~~~i~~~~~---~--~~a~~lA~GlDp~ 150 (419)
.+++||+||+|||.+|||||+|+++.|..+|..++++|+||||||+|+ +.+++++.++.. + +.+.|+|+|+||+
T Consensus 34 ~~~~vy~G~~PTG~lHlG~~~~~l~~~~~~q~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~ 113 (372)
T 1n3l_A 34 RELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLE 113 (372)
T ss_dssp SCCEEEEEECCSSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred CCCEEEeCcCCCCcccHHHHHHHHHHHHHHHCCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 367999999999999999999999888777766899999999999997 667666654443 2 3445799999999
Q ss_pred ceEEEEcCCcc---hhhHHHHHHhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccceecccCchH
Q 014776 151 KASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (419)
Q Consensus 151 k~~if~qS~v~---~~~el~w~L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~adivpvG~DQ~ 227 (419)
|+.||+||+|+ ++.++.|.++|.+++++++++.+. ..+ . .+++++|+|+||+||||||++|++|+||||.||+
T Consensus 114 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~~--v~~-~-~~~~~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~ 189 (372)
T 1n3l_A 114 KLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAE--VVK-Q-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQR 189 (372)
T ss_dssp TEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTTT--TSC-C-CSSCCHHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred hcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchhh--hhc-c-cCCCcceeeecchHhhccHHHhcCCEEEcChhHH
Confidence 99999999996 788889999999999999886321 111 1 2578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCCCHHHHHHH
Q 014776 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (419)
Q Consensus 228 ~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~Dspe~I~~K 307 (419)
+|++++||++++|+ +.+|..++.+ +||+| +| +|||||+++ ++|+|+|+|++|++|
T Consensus 190 ~~~~l~rdl~~r~~------------------~~~p~~l~~p---ll~gl-dG-~KMSKS~~n--s~I~L~d~p~~i~kK 244 (372)
T 1n3l_A 190 KIFTFAEKYLPALG------------------YSKRVHLMNP---MVPGL-TG-SKMSSSEEE--SKIDLLDRKEDVKKK 244 (372)
T ss_dssp HHHHHHHHHGGGGT------------------CCCCEEEEEC---CCCCS-SC-C-------C--CSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC------------------CCCCEEEecC---ccCCC-Cc-ccccCCCCC--CeEeccCCHHHHHHH
Confidence 99999999999975 5678888764 99999 66 699999973 799999999999999
Q ss_pred hhhccCCCCCCcccCCCCCCccchHHHHHHh--------c------------CCCCHHHHHHHHhc--CCcchHHHHHHH
Q 014776 308 IKRCKTDSSAGLEFDNLERPECNNLLSIYQL--------I------------SGKTKGEVAEECQN--MNWGTFKPLLTD 365 (419)
Q Consensus 308 I~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~--------~------------~~~~~eel~~~~~~--l~~~dlK~~La~ 365 (419)
||+|+||+. +++.++++.|+++ | +++++++++++|.+ ++|++||+.||+
T Consensus 245 i~~A~td~~---------~~~d~~v~~~lk~~l~~~~~~f~~er~~~~g~~~~~~~i~el~~~~~~g~~~~~~~K~~La~ 315 (372)
T 1n3l_A 245 LKKAFCEPG---------NVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEV 315 (372)
T ss_dssp HHTCCCCTT---------CCSSCHHHHHHHHTTGGGTTCEEECCCGGGTCCEEESSHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHccCCCC---------CCCcccHHHHHHHhhhhhhcceeecccccccCCCCHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 999999874 2455688888775 3 45699999999984 899999999999
Q ss_pred HHHHhhhHHHHHHH
Q 014776 366 ALIEHLHPIQVRYE 379 (419)
Q Consensus 366 ~I~~~L~pirer~~ 379 (419)
.|+++|+|+|++|+
T Consensus 316 ~i~~~l~p~r~~~~ 329 (372)
T 1n3l_A 316 ALNKLLDPIREKFN 329 (372)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHHhc
Confidence 99999999999997
No 30
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=8.1e-60 Score=470.52 Aligned_cols=261 Identities=14% Similarity=0.153 Sum_probs=228.9
Q ss_pred CceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecC-CC---------CHHHHHHHH---HHHHHHH
Q 014776 78 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PY---------DTQQLSKAT---RETAAIY 142 (419)
Q Consensus 78 ~~~i~tGi~PTG~-lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~-~~---------~~~~i~~~~---~~~~a~~ 142 (419)
++++|+||+|||. +|||||++ +.+|++||+. ++++|+|||+||+|+ |. +++++++|+ +++++.|
T Consensus 33 ~~~vy~G~~PTg~slHlGh~l~-l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~~~ 111 (322)
T 2yxn_A 33 PIALVCGFDPTADSLHLGHLVP-LLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAPF 111 (322)
T ss_dssp CCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHGGG
T ss_pred CCEEEEeecCCCCcccHHHHHH-HHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999 99999996 7799999997 899999999999997 43 899999999 7888889
Q ss_pred HHcCcCCCceEEEEcCCcch-hhHHHHH--HhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhc----
Q 014776 143 LACGIDNSKASVFVQSHVRA-HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 215 (419)
Q Consensus 143 lA~GlDp~k~~if~qS~v~~-~~el~w~--L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~---- 215 (419)
+|+|+||+|++||.||+|+. +.++.|+ ++|.++++++.++.++|++.... .+++++|+|+||+||||||++|
T Consensus 112 la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~~-~~~is~g~f~YP~LQaaDil~l~~~~ 190 (322)
T 2yxn_A 112 LDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRE-DQGISFTEFSYNLLQGYDFACLNKQY 190 (322)
T ss_dssp SCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHCT-TCCCCHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhccC-CCCccchhhhHHHHHHHHHHHHhccC
Confidence 99999999999999999975 5888888 99999999999999999765421 2578999999999999999999
Q ss_pred ccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCce
Q 014776 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (419)
Q Consensus 216 ~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 295 (419)
++|+++||.||+||++++||+|+|||+ ..|..+.. ++||++ || +|||||++ |+|
T Consensus 191 ~~~v~~gG~DQ~~~i~l~rdla~r~n~------------------~~~~~l~~---pll~gl-dG-~KMSKS~~---n~I 244 (322)
T 2yxn_A 191 GVVLCIGGSDQWGNITSGIDLTRRLHQ------------------NQVFGLTV---PLITKA-DG-TKFGKTEG---GAV 244 (322)
T ss_dssp CEEEEEECTTCHHHHHHHHHHHHHHHC------------------CCCEEEEC---CCCBCT-TS-CBTTEETT---EEC
T ss_pred CceEEecCchhHHHHHHHHHHHHHhCC------------------CCceeecc---CccCCC-Cc-ccccCCCC---Cee
Confidence 999999999999999999999999994 22444544 499999 77 69999985 699
Q ss_pred ecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCCcchHHHHHHHHHHHhh
Q 014776 296 NLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEHL 371 (419)
Q Consensus 296 ~L~D---spe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~~~~~~eel~~~~~-~l~~~dlK~~La~~I~~~L 371 (419)
+|+| +|+++++||+++. ++++.+++.+|.+++++++++++++|. +.+++++|+.||++|+++|
T Consensus 245 ~L~d~~tsp~~~~~ki~~~~-------------d~~v~~~l~~~~~~~~~~i~~l~~~~~~g~~~~~~K~~La~~i~~~l 311 (322)
T 2yxn_A 245 WLDPKKTSPYKFYQFWINTA-------------DADVYRFLKFFTFMSIEEINALEEEDKNSGKAPRAQYVLAEQVTRLV 311 (322)
T ss_dssp BSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHH
T ss_pred eccCCCCCHHHHHHHHhCCC-------------cccHHHHHHHHHcCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 9999 9999999999963 235566666666667788999999997 4699999999999999999
Q ss_pred hHHHHHHH
Q 014776 372 HPIQVRYE 379 (419)
Q Consensus 372 ~pirer~~ 379 (419)
+|.++..+
T Consensus 312 ~~~~~~~~ 319 (322)
T 2yxn_A 312 HGEEGLQA 319 (322)
T ss_dssp HHHHHHHH
T ss_pred CCHHHHHH
Confidence 99998765
No 31
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=9e-57 Score=453.82 Aligned_cols=260 Identities=17% Similarity=0.143 Sum_probs=212.7
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecC-CC---------CHHHHHHHHHHHHHHHHH
Q 014776 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (419)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~~a~~lA 144 (419)
++++||+||+|||. +||||++ ++.+|++||+. ++++|+|||+||+|+ |. +++++++|+++++++|+|
T Consensus 45 ~~~~vy~G~~PTg~sLHLGhl~-~l~~~~~lQ~~G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a 123 (356)
T 2pid_A 45 FPQTIYCGFDPTADSLHVGHLL-ALLGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLEA 123 (356)
T ss_dssp -CCEEEEEECCSSSSCBHHHHH-HHHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCcccHHHHH-HHHHHHHHHHCCCcEEEEEccceeeecCCcccccccccCCHHHHHHHHHHHHHHHHH
Confidence 35899999999997 9999965 57899999997 899999999999997 42 699999999999999999
Q ss_pred cCcCCCc-----------eEEEEcCCcchhhHHHHHHh---ccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHH
Q 014776 145 CGIDNSK-----------ASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS 210 (419)
Q Consensus 145 ~GlDp~k-----------~~if~qS~v~~~~el~w~L~---~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaA 210 (419)
+ +||++ ++||+||+|..+.++.|++. +.+++++|.+..+||++... .+++++|+|+||+||||
T Consensus 124 ~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~~m~~~~~~k~r~~~--~~~is~g~f~YPvLQAa 200 (356)
T 2pid_A 124 L-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKS--PEGMSLAEFFYQVLQAY 200 (356)
T ss_dssp H-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHHHHHHCHHHHHHHTS--TTCCBHHHHHHHHHHHH
T ss_pred h-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHHHHhcchHHHHhhcc--CCCCchHHHHHHHHHHH
Confidence 9 99855 99999999987777777755 47899999999999865432 25789999999999999
Q ss_pred hhhhc----ccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCcccc
Q 014776 211 DILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (419)
Q Consensus 211 Dil~~----~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSK 286 (419)
||++| ++|+||||.||+||++++||+|+|||+ + .|..+.. ++||++ || +||||
T Consensus 201 Dil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~--~----------------~~~~l~~---pll~~l-dG-~KMSK 257 (356)
T 2pid_A 201 DFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTG--E----------------DVFGITV---PLITST-TG-AKLGK 257 (356)
T ss_dssp HHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSS--C----------------CCEEEEE---CCCC-----------
T ss_pred HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCC--C----------------Ccccccc---ccccCC-Cc-ccccC
Confidence 99999 999999999999999999999999984 2 2333433 488999 77 69999
Q ss_pred CCCCCCCceecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCCcchHHHH
Q 014776 287 SAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPL 362 (419)
Q Consensus 287 S~p~~~s~I~L~D---spe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~~~~~~eel~~~~~-~l~~~dlK~~ 362 (419)
|. +|+|+|+| +|++|++||+++. ++++.+++.+|++++++++++++++|. +.+++++|+.
T Consensus 258 S~---~naI~L~d~~tsp~~i~~ki~~~~-------------D~~v~~~l~~~t~~~~~~i~~l~~~~~~g~~~~~~K~~ 321 (356)
T 2pid_A 258 SA---GNAVWLNRDKTSPFELYQFFVRQP-------------DDSVERYLKLFTFLPLPEIDHIMQLHVKEPERRGPQKR 321 (356)
T ss_dssp -------CCBSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGCHHHHH
T ss_pred CC---CCeeeccCCCCCHHHHHHHHHcCC-------------chhHHHHHHHHHcCCchHHHHHHHHHhcCCCHHHHHHH
Confidence 95 58999999 9999999999963 345778888887777889999999997 4689999999
Q ss_pred HHHHHHHhhhHHHHHHH
Q 014776 363 LTDALIEHLHPIQVRYE 379 (419)
Q Consensus 363 La~~I~~~L~pirer~~ 379 (419)
||+.|+++|+...+..+
T Consensus 322 La~~v~~~l~g~~~~~~ 338 (356)
T 2pid_A 322 LAAEVTKLVHGREGLDS 338 (356)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHH
Confidence 99999999999876544
No 32
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.3e-56 Score=459.71 Aligned_cols=261 Identities=14% Similarity=0.133 Sum_probs=227.9
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecC-C--------CCHHHHHHHHHHH---HHHH
Q 014776 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-P--------YDTQQLSKATRET---AAIY 142 (419)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~-~--------~~~~~i~~~~~~~---~a~~ 142 (419)
.++++|+||+|||. +||||++ .+.+|++||+. ++++|+|||+||+++ | .+++++++|++++ ++.|
T Consensus 31 ~~~~iy~G~dPTg~sLHLGhlv-~l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~~~ 109 (432)
T 2jan_A 31 GPMTVYAGFDPTAPSLHAGHLV-PLLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAEWTERIRGQLERF 109 (432)
T ss_dssp SCCEEEEEECCSSSSCBGGGHH-HHHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCcCHHHHH-HHHHHHHHHHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 36899999999996 9999965 57799999997 899999999999997 5 6889999999866 6778
Q ss_pred HHcCcCCCceEEEEcCCcch-hhHHHHH--HhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhc----
Q 014776 143 LACGIDNSKASVFVQSHVRA-HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 215 (419)
Q Consensus 143 lA~GlDp~k~~if~qS~v~~-~~el~w~--L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~---- 215 (419)
+|+|+||+|++||+||+|++ +.++.|+ ++|.+++++|.|+.+||++. . .+++++|+|+||+||||||++|
T Consensus 110 La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~--~-~~~is~~ef~YPlLQaaDil~l~~~~ 186 (432)
T 2jan_A 110 VDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL--A-GEGISYTEFSYLLLQANDYVELHRRH 186 (432)
T ss_dssp SCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT--S-TTCCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhh--c-CCCcchHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999976 4688899 99999999999999999765 2 2678999999999999999999
Q ss_pred ccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCce
Q 014776 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (419)
Q Consensus 216 ~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 295 (419)
++|+||||.||++|++++||+|+|||+ ..|..+.. ++||++ || +|||||.+ +++|
T Consensus 187 ~~~i~~gG~DQ~~ni~lgrdlarr~~~------------------~~~~~l~~---plL~~l-dG-~KMSKS~~--nsaI 241 (432)
T 2jan_A 187 GCTLQIGGADQWGNIIAGVRLVRQKLG------------------ATVHALTV---PLVTAA-DG-TKFGKSTG--GGSL 241 (432)
T ss_dssp CCCEEEECSTTHHHHHHHHHHHHHHHC------------------CCCEEEEC---CCCBCT-TS-CBTTBCSS--SCBC
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCC------------------CCcccccc---ccccCC-Cc-CcCCCCCC--CCeE
Confidence 999999999999999999999999984 22334444 489999 77 69999986 3599
Q ss_pred ecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCCcchHHHHHHHHHHHhh
Q 014776 296 NLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEHL 371 (419)
Q Consensus 296 ~L~D---spe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~~~~~~eel~~~~~-~l~~~dlK~~La~~I~~~L 371 (419)
+|+| +|+++++||+++. ++++.+++.+|++++.+++++++++|. +.+++++|+.||+.|++++
T Consensus 242 ~L~d~~tsp~~i~qki~~~~-------------D~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~~~~K~~LA~~v~~~~ 308 (432)
T 2jan_A 242 WLDPQMTSPYAWYQYFVNTA-------------DADVIRYLRWFTFLSADELAELEQATAQRPQQRAAQRRLASELTVLV 308 (432)
T ss_dssp BSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHSCCCHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHHH
T ss_pred EccCCCCCHHHHHHHHhcCC-------------chhHHHHHHHHHcCChHHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 9999 9999999999963 345677778777777789999999997 5589999999999999999
Q ss_pred hHHHHHHH
Q 014776 372 HPIQVRYE 379 (419)
Q Consensus 372 ~pirer~~ 379 (419)
+...+..+
T Consensus 309 hg~~~~~~ 316 (432)
T 2jan_A 309 HGEAATAA 316 (432)
T ss_dssp HHHHHHHH
T ss_pred cCHHHHHH
Confidence 99875443
No 33
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=3.8e-55 Score=446.69 Aligned_cols=273 Identities=18% Similarity=0.146 Sum_probs=228.6
Q ss_pred CceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecC-C---------CCHHHHHHHHHHHHHHHHHc
Q 014776 78 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLAC 145 (419)
Q Consensus 78 ~~~i~tGi~PTG~-lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~-~---------~~~~~i~~~~~~~~a~~lA~ 145 (419)
++++|+||+|||. +|||||++ +.+|++||+. ++++|+|||+||+|+ | .+++++++|+.++.++++|+
T Consensus 64 ~~~vy~G~dPTg~sLHlGhlv~-l~~l~~lQ~~G~~~~~lIgD~haligdpsgk~~~R~~~~~e~i~~n~~~i~~~~~a~ 142 (392)
T 1y42_X 64 RIGAYVGIDPTAPSLHVGHLLP-LMPLFWMYLEGYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLKKL 142 (392)
T ss_dssp CCEEEEEECCCSSSCBGGGHHH-HHHHHHHHHHTCEEEEEECTTTTTTCCCCC-----------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEeecCCCCCccHHHHHH-HHHHHHHHHcCCcEEEEEcCceeEeCCCCCcchhhccCCHHHHHHHHHHHHHHHHHH
Confidence 6799999999999 99999996 6799999997 899999999999997 4 27889999999999998887
Q ss_pred C-----------cC---CCceEEEEcCCc-chhhHHHHH--HhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHH
Q 014776 146 G-----------ID---NSKASVFVQSHV-RAHVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLM 208 (419)
Q Consensus 146 G-----------lD---p~k~~if~qS~v-~~~~el~w~--L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQ 208 (419)
| +| |+++.||.||+| +++.++.|+ +++.++++++.+..+||.+... .+++++|+|+||+||
T Consensus 143 ~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml~~~~~k~r~~~--~~~is~gef~YPlLQ 220 (392)
T 1y42_X 143 WENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQ--GDGVSFAEFTYPIMQ 220 (392)
T ss_dssp HHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHHSSHHHHHTTSS--SSCCCHHHHHHHHHH
T ss_pred hccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHhhhhHHHHHhcC--CCCcccHHHHHHHHH
Confidence 5 45 789999999997 778899999 8999999887777677754322 367899999999999
Q ss_pred HHhhhhc----ccceecccCchHHHHHHHHHHHHHHhhhhCC--c---cccccCCCCCccccCCceecCCCCcccccCCC
Q 014776 209 ASDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGG--R---KWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD 279 (419)
Q Consensus 209 aADil~~----~adivpvG~DQ~~h~eLaRdia~r~n~~~g~--~---~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~d 279 (419)
||||+++ ++|+||||.||+||++++||||+|||+.|+. . ..+++| +..|..+.. ++||+| |
T Consensus 221 AaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~------~~~~~~l~~---pll~~l-d 290 (392)
T 1y42_X 221 GWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTA------LDECVGFTV---PLLTDS-S 290 (392)
T ss_dssp HHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSG------GGSCEEEEC---CCCBCT-T
T ss_pred HHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccc------cCCcccccc---ccCcCC-c
Confidence 9999987 5999999999999999999999999987731 0 122333 345555554 499999 7
Q ss_pred CCCccccCCCCCCCceecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCC
Q 014776 280 GLSKMSKSAPSDQSRINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMN 355 (419)
Q Consensus 280 g~~KMSKS~p~~~s~I~L~D---spe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~~~~~~eel~~~~~-~l~ 355 (419)
| +|||||. +|+|+|+| +|+++++||+++. ++++.+++.+|++++++++++|+++|. +.+
T Consensus 291 G-~KMSKS~---~naI~L~d~~tsp~~i~qki~~~~-------------D~~v~~~l~~ft~l~~~ei~~l~~~~~~g~~ 353 (392)
T 1y42_X 291 G-AKFGKSA---GNAIWLDPYQTSVFDFYGYFVRRS-------------DQEVENLLKLFTFMPISEITKTMEEHIKDPS 353 (392)
T ss_dssp C-CBTTBCS---SSBCBSSTTTSCHHHHHHHHHTCC-------------TTTHHHHHHHHCCCCHHHHHHHHHHHHHCGG
T ss_pred h-hhccCCC---CCeeeccCCCCCHHHHHHHHHcCC-------------chhHHHHHHHHHhCChhHHHHHHHHHhcCCC
Confidence 7 6999997 58999999 9999999999962 346778888888888889999999997 358
Q ss_pred cchHHHHHHHHHHHhhhHHHHHHHH
Q 014776 356 WGTFKPLLTDALIEHLHPIQVRYEE 380 (419)
Q Consensus 356 ~~dlK~~La~~I~~~L~pirer~~~ 380 (419)
++++|+.||+.|+++|++.++..+.
T Consensus 354 ~~~~K~~LA~~v~~~lhg~~~~~~a 378 (392)
T 1y42_X 354 KRVAQHTLAREVVTLVHGKQEASAA 378 (392)
T ss_dssp GCHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 9999999999999999999876553
No 34
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=3e-54 Score=443.73 Aligned_cols=257 Identities=14% Similarity=0.141 Sum_probs=226.5
Q ss_pred CceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecC-CC---------CHHHHHHHHHHHHHHHHHc
Q 014776 78 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLAC 145 (419)
Q Consensus 78 ~~~i~tGi~PTG~-lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~~a~~lA~ 145 (419)
++++|+||+|||. +|||||++ +.+|++||+. |+++|+|||+||+|+ |. +++++++|+.++.++++++
T Consensus 32 ~~~iy~G~dPTg~sLHlGh~v~-l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~~~~~~~~~ 110 (420)
T 1jil_A 32 QVTLYCGADPTADSLHIGHLLP-FLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNI 110 (420)
T ss_dssp CCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHHHHHHHHHHH
Confidence 6799999999999 99999996 6799999997 899999999999997 43 8999999999999999999
Q ss_pred CcCC---CceEEEEcCCcc-hhhHHHHHH--hccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhc----
Q 014776 146 GIDN---SKASVFVQSHVR-AHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 215 (419)
Q Consensus 146 GlDp---~k~~if~qS~v~-~~~el~w~L--~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~---- 215 (419)
||| +|++||.||+|+ ++.++.|+. ++.+++++|.++.+||++. + +++++|+|+||+||||||++|
T Consensus 111 -ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~---~-~~is~~ef~YplLQaaD~l~l~~~~ 185 (420)
T 1jil_A 111 -FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL---E-HGISYTEFTYTILQAIDFGHLNREL 185 (420)
T ss_dssp -SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHH---T-TTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhc---c-CCcchHHHHHHHHHHHHHHHHhccC
Confidence 998 999999999997 679999986 8999999999999998654 2 678999999999999999999
Q ss_pred ccceecccCchHHHHHHHHHHHHHH-hhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCc
Q 014776 216 QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (419)
Q Consensus 216 ~adivpvG~DQ~~h~eLaRdia~r~-n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 294 (419)
++|+||||.||++|++++||+|+|| |+ ..|..+.. ++||++ || +|||||. +|+
T Consensus 186 ~~~i~~gG~DQ~~ni~~grdla~r~~~~------------------~~~~~l~~---pll~~l-dG-~KMSKS~---~na 239 (420)
T 1jil_A 186 NCKIQVGGSDQWGNITSGIELMRRMYGQ------------------TDAYGLTI---PLVTKS-DG-KKFGKSE---SGA 239 (420)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHHCC------------------CCCEEEEE---CCCBCT-TS-CBTTBCS---SSB
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhcCC------------------CCeeEeec---ccccCC-cc-ccccCCC---CCe
Confidence 9999999999999999999999999 73 22334443 489999 77 6999998 479
Q ss_pred eecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCCcchHHHHHHHHHHHh
Q 014776 295 INLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIEH 370 (419)
Q Consensus 295 I~L~D---spe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~~~~~~eel~~~~~-~l~~~dlK~~La~~I~~~ 370 (419)
|+|+| +|++|++||+++. ++++.+++.+|++++.+++++++++|. +.+++++|+.||+.|+++
T Consensus 240 I~L~d~~tsp~~i~~ki~~~~-------------D~~v~~~l~~~t~~~~~ei~~l~~~~~~g~~~~~~K~~La~~v~~~ 306 (420)
T 1jil_A 240 VWLDAEKTSPYEFYQFWINQS-------------DEDVIKFLKYFTFLGKEEIDRLEQSKNEAPHLREAQKTLAEEVTKF 306 (420)
T ss_dssp CBSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCGGGCHHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHhcCC-------------chhHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 99999 9999999999953 345667777777777788999999997 458999999999999999
Q ss_pred hhHHHHHHH
Q 014776 371 LHPIQVRYE 379 (419)
Q Consensus 371 L~pirer~~ 379 (419)
++...+..+
T Consensus 307 ~hg~~~~~~ 315 (420)
T 1jil_A 307 IHGEDALND 315 (420)
T ss_dssp HHCHHHHHH
T ss_pred HcCHHHHHH
Confidence 999876544
No 35
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=7.2e-55 Score=447.60 Aligned_cols=260 Identities=13% Similarity=0.158 Sum_probs=217.4
Q ss_pred CCceEEEecCCCCc-chhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecC-CC---------CHHHHHHHHHHH---HHH
Q 014776 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITL-PY---------DTQQLSKATRET---AAI 141 (419)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~-~~---------~~~~i~~~~~~~---~a~ 141 (419)
+++++|+||+|||. +|||||++ +.+|++||+. |+++|+|||+||+|+ |. +++++++|+.++ ++.
T Consensus 29 ~~~~iy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~q~~~ 107 (419)
T 2ts1_A 29 ERVTLYCGFDPTADSLHIGHLAT-ILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGR 107 (419)
T ss_dssp SCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHHHHHHHHHH
Confidence 36899999999999 99999996 6799999997 899999999999997 43 899999999877 556
Q ss_pred HHHcCcCCCceEEEEcCCcchhhHHHHHHh---ccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhc---
Q 014776 142 YLACGIDNSKASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (419)
Q Consensus 142 ~lA~GlDp~k~~if~qS~v~~~~el~w~L~---~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~--- 215 (419)
|+++|+||+|++||.||+|+.+..+.|.|. ..+++++|.+..+|+ ++. .+++++|+|+||+||||||++|
T Consensus 108 ~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k---~r~-~~~is~~ef~YPlLQaaDil~l~~~ 183 (419)
T 2ts1_A 108 FLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQ---SRI-ETGISFTEFSYMMLQAYDFLRLYET 183 (419)
T ss_dssp SSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHH---TTT-TTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhh---hcc-CCCcchHHHHHHHHHHHHHHHHhcc
Confidence 789999999999999999987666666655 556665555554444 333 3678999999999999999999
Q ss_pred -ccceecccCchHHHHHHHHHHHHHH-hhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCC
Q 014776 216 -QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (419)
Q Consensus 216 -~adivpvG~DQ~~h~eLaRdia~r~-n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 293 (419)
++|+||||.||++|++++||+|+|| |+ ..|..+.. ++||++ || +|||||. +|
T Consensus 184 ~~~~i~~gG~DQ~~ni~lgrdlarr~~~~------------------~~~~~lt~---pll~~l-dG-~KMSKS~---~n 237 (419)
T 2ts1_A 184 EGCRLQIGGSDQWGNITAGLELIRKTKGE------------------ARAFGLTI---PLVTKA-DG-TKFGKTE---SG 237 (419)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHHC--------------------CCEEEEE---CCCCCT-TS-CCTTCCS---SC
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhcCC------------------CCeeeccc---ccccCC-Cc-ccccCCC---CC
Confidence 9999999999999999999999999 73 12334443 488998 77 6999997 47
Q ss_pred ceecCC---CHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhcCCCCHHHHHHHHh-cCCcchHHHHHHHHHHH
Q 014776 294 RINLLD---PKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLISGKTKGEVAEECQ-NMNWGTFKPLLTDALIE 369 (419)
Q Consensus 294 ~I~L~D---spe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~~~~~~eel~~~~~-~l~~~dlK~~La~~I~~ 369 (419)
+|+|+| +|+++++||+++. ++++.+++.+|++++.+++++++++|. +.+++++|+.||+.|++
T Consensus 238 aI~L~d~~tsp~~i~qki~~~~-------------D~~v~~~l~l~t~~~~~ei~~l~~~~~~g~~~~~~K~~LA~~v~~ 304 (419)
T 2ts1_A 238 TIWLDKEKTSPYEFYQFWINTD-------------DRDVIRYLKYFTFLSKEEIEALEQELREAPEKRAAQKTLAEEVTK 304 (419)
T ss_dssp CCBSSTTTSCHHHHHHHHHTCC-------------HHHHHHHHHHHCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred eEecCCCCCCHHHHHHHHhcCC-------------chhHHHHHHHHHcCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 999999 9999999999953 345667777777777788999999997 56999999999999999
Q ss_pred hhhHHHHHHHH
Q 014776 370 HLHPIQVRYEE 380 (419)
Q Consensus 370 ~L~pirer~~~ 380 (419)
+++...+..+.
T Consensus 305 ~~hg~~~~~~a 315 (419)
T 2ts1_A 305 LVHGEEALRQA 315 (419)
T ss_dssp HHHCHHHHHHH
T ss_pred HHcCHHHHHHH
Confidence 99998765543
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=8.9e-49 Score=423.69 Aligned_cols=264 Identities=14% Similarity=0.155 Sum_probs=217.7
Q ss_pred CCCCCCCCCceEEEecCCCCcchhhhHHHHHHHHHHHhhc---ccEEEEEeCcceecC-C--CCHHHHHHHHHHHHHHHH
Q 014776 70 PVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS---YETLFFIVDLHAITL-P--YDTQQLSKATRETAAIYL 143 (419)
Q Consensus 70 ~~~~~~~~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~---~~~~i~IaDlhA~t~-~--~~~~~i~~~~~~~~a~~l 143 (419)
+.++.+..+..|+|+- |||.+||||++++++.|.++|+. ++++|+||||||+++ + .+++++++++.+++++|+
T Consensus 374 ~~~~~~~~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~ 452 (690)
T 3p0j_A 374 ALPAAPAKPHACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLK 452 (690)
T ss_dssp --CCCCSSCEEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCcceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3444555677888888 99999999999987657776543 689999999999998 4 589999999999999999
Q ss_pred HcCcCCCceEEEEcCCcchh-hHHHHH----HhccccHHHHhhhhhHHHHHHhhCCCCccchhhhhhHHHHHhhhhcccc
Q 014776 144 ACGIDNSKASVFVQSHVRAH-VELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSD 218 (419)
Q Consensus 144 A~GlDp~k~~if~qS~v~~~-~el~w~----L~~~~~v~~l~r~~~~k~~~~~~~~~~~~~g~l~YPvLQaADil~~~ad 218 (419)
|+|+|| |++|++||+|... .+++|. ++..++++|+.+.. +.+++++|+|+||+||+|||+.+++|
T Consensus 453 alG~d~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~---------~~~~~~i~~~~YPlmQaaDi~~l~aD 522 (690)
T 3p0j_A 453 AYGLPS-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELY---------GGEVRNAGQVIAALMRVATALMLSVS 522 (690)
T ss_dssp HHTCCT-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHT---------TSCCSSHHHHHHHHHHHHHHHHTTCS
T ss_pred hcCCCc-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHh---------CCCCcchHHHHHHHHHHhhhhccCCC
Confidence 999997 8999999998643 356775 57778888777642 23788999999999999999999999
Q ss_pred eecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecC
Q 014776 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (419)
Q Consensus 219 ivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~ 298 (419)
++|||.||++|++|+||++++++ .|..++. .++|+|+++.++||||++ +|+|+|+
T Consensus 523 i~~gG~DQ~~~~~LaRd~~~~~~--------------------~~~~~~~---~~~P~L~gp~~~~~~~s~--~~~I~l~ 577 (690)
T 3p0j_A 523 HVISTSLDGHINAFAREYTKERI--------------------DCVQTLE---GRIPALHRPGAAPAVLGA--DDVLYLD 577 (690)
T ss_dssp EEEECSTTTTTTHHHHHHTTTCS--------------------EEEECCC---CSSCCSSCCCC---------CCSCBTT
T ss_pred EEecccccHHHHHHHHHHHHhcc--------------------Ccccccc---cccccCCCcccccCCCCC--CCeeecc
Confidence 99999999999999999998743 2444444 499999777666677765 6999999
Q ss_pred CCHHHHHHHhhhccCCCCCCcccCCCCCCccchHHHHHHhc-------------------CCCCHHHHHHHHh--cCCcc
Q 014776 299 DPKDVIANKIKRCKTDSSAGLEFDNLERPECNNLLSIYQLI-------------------SGKTKGEVAEECQ--NMNWG 357 (419)
Q Consensus 299 Dspe~I~~KI~kA~Td~~~~i~~~~~~rp~v~~ll~i~~~~-------------------~~~~~eel~~~~~--~l~~~ 357 (419)
|+|++|++|||+|||++ + .+.|++++|++++ +++++++|+++|. .+||+
T Consensus 578 D~~~~i~~KI~kA~c~p---------~-ve~np~l~~~~~~~~~~~~~~i~r~~~~Gg~~~~~~~eel~~~y~~G~lhp~ 647 (690)
T 3p0j_A 578 DNDMDIRRKIKKAYSAP---------N-EEANPVISVAQHLLAQHGALSIERGEANGGNVSYNTPEALVADCGSGALHPA 647 (690)
T ss_dssp CCHHHHHHHHHHSCCCT---------T-CSCSHHHHHHHHHHHHHSCEEECCCTTTTCCEEESSHHHHHHHHHSSSCCHH
T ss_pred CCHHHHHHHHHHhcCCC---------C-CCCChHHHHHHHHhccCCceEEechhhhCCCCCccCHHHHHHHHHcCCCCHH
Confidence 99999999999999865 2 4668999999976 1469999999997 58999
Q ss_pred hHHHHHHHHHHHhhhHHHHHHH
Q 014776 358 TFKPLLTDALIEHLHPIQVRYE 379 (419)
Q Consensus 358 dlK~~La~~I~~~L~pirer~~ 379 (419)
|||++|+++|+++|+|+|++|+
T Consensus 648 dlK~~la~~l~~~l~p~Re~~~ 669 (690)
T 3p0j_A 648 DLKAAVLQLLLDRSAQARALLN 669 (690)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998
No 37
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.11 E-value=3.8e-10 Score=118.14 Aligned_cols=199 Identities=18% Similarity=0.194 Sum_probs=130.5
Q ss_pred cCCCCcchhhhHHHHHHHHHHHhhcccEEEE-EeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCce-------EEEE
Q 014776 85 VQPTGSIHLGNYLGAIKNWIALQNSYETLFF-IVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA-------SVFV 156 (419)
Q Consensus 85 i~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~-IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~-------~if~ 156 (419)
=.|||.+||||+..++.+|...+..+..+++ |-|. ++ .....+....+..++..+||+++.. .+|+
T Consensus 13 PsPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDt----D~--~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~~~ 86 (498)
T 2ja2_A 13 PSPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDT----DA--QRDSEESYLALLDALRWLGLDWDEGPEVGGPYGPYR 86 (498)
T ss_dssp CCSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CT--TTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCB
T ss_pred cCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----CC--cccChHHHHHHHHHHHHcCCCcCCCcCcCCCCCCee
Confidence 3577999999999999999877666556666 7775 22 1334466778888999999999974 5899
Q ss_pred cCCcchhhHHH--------HHHhccccHHHHhhhh---------hHHH---------HHH--hhCCC----------Cc-
Q 014776 157 QSHVRAHVELM--------WLLSSATPIGWLNKMI---------QFKE---------KSH--KAGGE----------NV- 197 (419)
Q Consensus 157 qS~v~~~~el~--------w~L~~~~~v~~l~r~~---------~~k~---------~~~--~~~~~----------~~- 197 (419)
||+..+.-..+ ..+.|.++-.+|+++. .|.. ..+ ..|.. .+
T Consensus 87 QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~ 166 (498)
T 2ja2_A 87 QSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLA 166 (498)
T ss_dssp GGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSSCEE
T ss_pred eecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCCceE
Confidence 99975432111 1256999988886542 1110 000 01100 00
Q ss_pred ----cchhhhhhHHHHHhhhhcccceecc-------------------cCchHHHHHHHHHHHHHHhhhhCCccccccCC
Q 014776 198 ----GVALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254 (419)
Q Consensus 198 ----~~g~l~YPvLQaADil~~~adivpv-------------------G~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~ 254 (419)
-.|.+.++.-+.-|.+++++|-.|. |.|+..+...-+.+.+.||. +| +|
T Consensus 167 ~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~-~g------~g- 238 (498)
T 2ja2_A 167 WNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR-IG------VA- 238 (498)
T ss_dssp EEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH-TT------SC-
T ss_pred EEecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh-hc------CC-
Confidence 1234556655556777665555555 99999999999999999876 53 11
Q ss_pred CCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC------CHHHHHHHhhhc
Q 014776 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (419)
Q Consensus 255 ~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~~KI~kA 311 (419)
++.|+..+.+ +|.+. +| +||||++. .+.|.+ .|+.|..-+...
T Consensus 239 -----~~~P~~~h~p---lil~~-~g-~KLSKR~g----~~~l~~~r~~G~~peAl~~~l~~l 287 (498)
T 2ja2_A 239 -----ERIPKFAHLP---TVLGE-GT-KKLSKRDP----QSNLFAHRDRGFIPEGLLNYLALL 287 (498)
T ss_dssp -----CCCCEEEEEC---CEECS-SS-SBCCTTSG----GGBHHHHHHHTCCHHHHHHHHHTS
T ss_pred -----CCCCeEEEee---eeECC-CC-CcccccCC----cccHHHHHhCCCCHHHHHHHHHHh
Confidence 5667766654 77776 66 69999973 334433 577777776653
No 38
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.08 E-value=6.5e-11 Score=116.58 Aligned_cols=176 Identities=16% Similarity=0.195 Sum_probs=103.3
Q ss_pred ecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcCCcch
Q 014776 84 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA 162 (419)
Q Consensus 84 Gi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~v~~ 162 (419)
--.|||.+||||+..++.+|...+.. +..++-|-|. ++ .....+....+..++.++|+++++. +++||+..+
T Consensus 11 APsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDt----D~--~R~~~~~~~~I~~dL~~LGl~~D~~-~~~qSer~~ 83 (298)
T 1nzj_A 11 APSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDI----DP--PREVPGAAETILRQLEHYGLHWDGD-VLWQSQRHD 83 (298)
T ss_dssp CCCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCS----CG--GGSCTTHHHHHHHHHHHTTCCCSSC-CEEGGGCHH
T ss_pred CcCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecC----Cc--hhhHHHHHHHHHHHHHHcCCCCCCC-CeeeeCCHH
Confidence 34577999999999999999877665 4566677773 21 1334567778899999999999874 799999643
Q ss_pred -hhHH-------HHHHhccccHHHHhhhhh-HHHHHHh---hC---------------CCCccchhhhhhH-HHHHhhhh
Q 014776 163 -HVEL-------MWLLSSATPIGWLNKMIQ-FKEKSHK---AG---------------GENVGVALLTYPV-LMASDILL 214 (419)
Q Consensus 163 -~~el-------~w~L~~~~~v~~l~r~~~-~k~~~~~---~~---------------~~~~~~g~l~YPv-LQaADil~ 214 (419)
+.+. -+.+.|.++-.+|+++.. |...-+. .+ .+..-.|.+.++. .+..|.++
T Consensus 84 ~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL 163 (298)
T 1nzj_A 84 AYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFII 163 (298)
T ss_dssp HHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEE
T ss_pred HHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEE
Confidence 2111 122558888888876411 0000000 00 0011124444444 45567777
Q ss_pred cccceecc-------------------cCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccc
Q 014776 215 YQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVM 275 (419)
Q Consensus 215 ~~adivpv-------------------G~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~ 275 (419)
+++|-.|. |.|+..+...-..+.+.|+ ++.|...+.+ +|.
T Consensus 164 ~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG------------------~~~p~~~H~p---ll~ 222 (298)
T 1nzj_A 164 HRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFG------------------WKVPDYIHLP---LAL 222 (298)
T ss_dssp ECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEEC---BCC
T ss_pred ECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcC------------------CCCCeEEEee---eeE
Confidence 66655555 9999887766666656544 4567666554 777
Q ss_pred cCCCCCCccccCCC
Q 014776 276 SLTDGLSKMSKSAP 289 (419)
Q Consensus 276 sL~dg~~KMSKS~p 289 (419)
+. +| +||||+..
T Consensus 223 ~~-~g-~KLSKR~g 234 (298)
T 1nzj_A 223 NP-QG-AKLSKQNH 234 (298)
T ss_dssp C-------------
T ss_pred CC-CC-CcccccCC
Confidence 87 66 69999973
No 39
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.94 E-value=4.3e-10 Score=117.53 Aligned_cols=200 Identities=16% Similarity=0.155 Sum_probs=123.3
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceE----
Q 014776 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS---- 153 (419)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~---- 153 (419)
.++=..=.|||.+||||+..++.+|...+.. +++++-|-|. ++. ....+....+..++..+|++++...
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt----D~~--R~~~~~~~~I~~dL~wlGl~wDe~~~~gG 99 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT----DTE--RSSREYEQQILESLRWCGLDWDEGPDIGG 99 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CTT--TCCHHHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeC----Ccc--cccHHHHHHHHHHHHHcCCCCCcCCCCCC
Confidence 3444455678999999999999999776655 4566666665 221 2344566788889999999999753
Q ss_pred ---EEEcCCcch-hhHHH-------HHHhccccHHHHhhh--hhHHHH--HHhhCC--------C--Cc-----cchhhh
Q 014776 154 ---VFVQSHVRA-HVELM-------WLLSSATPIGWLNKM--IQFKEK--SHKAGG--------E--NV-----GVALLT 203 (419)
Q Consensus 154 ---if~qS~v~~-~~el~-------w~L~~~~~v~~l~r~--~~~k~~--~~~~~~--------~--~~-----~~g~l~ 203 (419)
.|+||+..+ +.+.. ..+.|.+|-.+|+++ +.|... ....|. . .+ -.|.+.
T Consensus 100 ~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~~ 179 (488)
T 3afh_A 100 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 179 (488)
T ss_dssp TTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEE
T ss_pred CCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeEe
Confidence 699999653 21111 113477776666542 011100 000010 0 00 022333
Q ss_pred hhHHHHHhhhhc-------------------ccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc
Q 014776 204 YPVLMASDILLY-------------------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 264 (419)
Q Consensus 204 YPvLQaADil~~-------------------~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~ 264 (419)
++.-+.-|.+++ +.++|.-|.|+..+...-..+.+.|+ ++.|+
T Consensus 180 ~~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG------------------~~~P~ 241 (488)
T 3afh_A 180 FDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPV 241 (488)
T ss_dssp EEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT------------------CCCCE
T ss_pred ecCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcC------------------CCCCe
Confidence 333333343333 46666679999999988888888765 45677
Q ss_pred eecCCCCcccccCCCCCCccccCCCCCCCceecCC------CHHHHHHHhhhc
Q 014776 265 PLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (419)
Q Consensus 265 ~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~~KI~kA 311 (419)
..+.+ +|.+. +| +||||++. .+.|.+ .|+.|.+-+...
T Consensus 242 f~H~p---li~~~-~g-~KLSKR~g----~~~l~~~r~~G~~peal~n~l~~l 285 (488)
T 3afh_A 242 FMHIP---LILGS-DR-TPLSKRHG----ATSVEHFRREGILSRALMNYLALL 285 (488)
T ss_dssp EEEEC---CEECT-TS-SBCCTTTS----CCBHHHHHHHTCCHHHHHHHHHHT
T ss_pred EEEEe---eeeCC-CC-CcccCcCC----cccHHHHHHCCCCHHHHHHHHHHh
Confidence 66654 77786 66 69999973 244443 688888877763
No 40
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.89 E-value=9.3e-10 Score=114.50 Aligned_cols=192 Identities=18% Similarity=0.160 Sum_probs=125.1
Q ss_pred CCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceE-------EEEc
Q 014776 86 QPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFVQ 157 (419)
Q Consensus 86 ~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~-------if~q 157 (419)
.|||.+||||+..++.+|...+.. +.+++=|-|. ++. ....+....+..++..+|++++... .|+|
T Consensus 9 sPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt----D~~--R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~Q 82 (468)
T 1j09_A 9 SPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDT----DRA--RYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYRQ 82 (468)
T ss_dssp CCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCC----CTT--SCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBG
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcC----CCc--ccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCeec
Confidence 578999999999999999876655 4555555664 211 2233566688889999999999753 5999
Q ss_pred CCcch-hhHHH-------HHHhccccHHHHhhhh-------------hHHHHHHh--hCC---------C--Cc-----c
Q 014776 158 SHVRA-HVELM-------WLLSSATPIGWLNKMI-------------QFKEKSHK--AGG---------E--NV-----G 198 (419)
Q Consensus 158 S~v~~-~~el~-------w~L~~~~~v~~l~r~~-------------~~k~~~~~--~~~---------~--~~-----~ 198 (419)
|+..+ +.+.. ..+.|.++-.++.++. +..+..+. .|. . .+ -
T Consensus 83 S~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~~ 162 (468)
T 1j09_A 83 SERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDEL 162 (468)
T ss_dssp GGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETT
T ss_pred cCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEecc
Confidence 99754 22111 1245888888876532 12211111 110 0 01 1
Q ss_pred chhhhhhHHHHHhhhhcccceecc-------------------cCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCcc
Q 014776 199 VALLTYPVLMASDILLYQSDFVPV-------------------GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAI 259 (419)
Q Consensus 199 ~g~l~YPvLQaADil~~~adivpv-------------------G~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~ 259 (419)
.|.+.+|..+.-|.+++++|..|. |.|+..|...-..+.+.|+
T Consensus 163 ~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg------------------ 224 (468)
T 1j09_A 163 RGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFG------------------ 224 (468)
T ss_dssp TEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHT------------------
T ss_pred ceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcC------------------
Confidence 244667777777888877666666 9999999998888888764
Q ss_pred ccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC------CHHHHHHHhhh
Q 014776 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 310 (419)
Q Consensus 260 f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~~KI~k 310 (419)
++.|+..+.+ +|.+. +| +||||++.+ ..|.+ .|+.|..-+..
T Consensus 225 ~~~p~~~h~~---li~~~-~g-~klSKR~g~----~~l~~~~~~G~~peal~~~l~~ 272 (468)
T 1j09_A 225 WEAPRFYHMP---LLRNP-DK-TKISKRKSH----TSLDWYKAEGFLPEALRNYLCL 272 (468)
T ss_dssp CCCCEEEEEC---CCBCT-TS-CBCCTTTSC----CBHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCeEEEee---eeeCC-CC-Cccccccch----hhHHHHHHCCCCHHHHHHHHHH
Confidence 4557655443 67776 56 699999843 23332 68888877765
No 41
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.73 E-value=3.2e-07 Score=95.98 Aligned_cols=194 Identities=18% Similarity=0.188 Sum_probs=120.0
Q ss_pred ecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcCCcch
Q 014776 84 GVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA 162 (419)
Q Consensus 84 Gi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~v~~ 162 (419)
.=.|||.+||||+..++.+|...+.. +.+++=|-|.- + .....+....+..++..+||+++. ..|+||+..+
T Consensus 7 APSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD----~--~R~~~~~~~~i~~dL~wLGl~wde-~~~~QS~r~~ 79 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTD----R--ERSRPEYTENILEGLQWLGLTWDE-GPYFQSDRLD 79 (492)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCS----S--SSCCHHHHHHHHHHHHHTTCCCSE-EEEEGGGCHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCC----c--cccchHHHHHHHHHHHHcCCCCCC-CCccccCCHH
Confidence 44678999999999999999765544 45666677753 1 122356777888999999999986 4799999643
Q ss_pred -hhHHHHH-------HhccccHHHHhhhhh----------HHH---------HHH--hhCC---------C---------
Q 014776 163 -HVELMWL-------LSSATPIGWLNKMIQ----------FKE---------KSH--KAGG---------E--------- 195 (419)
Q Consensus 163 -~~el~w~-------L~~~~~v~~l~r~~~----------~k~---------~~~--~~~~---------~--------- 195 (419)
+.+..-. +.|.++-.+|..+.. |.. ..+ ..|. .
T Consensus 80 ~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~ 159 (492)
T 2cfo_A 80 LYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDL 159 (492)
T ss_dssp HHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEET
T ss_pred HHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEec
Confidence 2222211 347777777654310 100 000 0010 0
Q ss_pred --------Cccc---------------hhhhhhHHHHHhhhhcccceecccCchHHHHHHHHHHHHHHhhhhCCcccccc
Q 014776 196 --------NVGV---------------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252 (419)
Q Consensus 196 --------~~~~---------------g~l~YPvLQaADil~~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~ 252 (419)
+..+ |..+|=+==+.|....+.|+|..|.|+..+-..-..+.+.|+
T Consensus 160 v~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg----------- 228 (492)
T 2cfo_A 160 VRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALG----------- 228 (492)
T ss_dssp TTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTT-----------
T ss_pred ceeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcC-----------
Confidence 0011 222222222334444556677899999998888877777654
Q ss_pred CCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC------CHHHHHHHhhhc
Q 014776 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (419)
Q Consensus 253 g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~~KI~kA 311 (419)
++.|...+.+ +|.+. +| +|||||+.+ +.+.+ .|+.|..-+...
T Consensus 229 -------~~~P~~~H~p---lil~~-~g-~KLSKr~g~----~~l~~~r~~G~~peal~~~l~~l 277 (492)
T 2cfo_A 229 -------ATPPNFAHTP---LILNS-TG-QKLSKRDGV----TSISDFRAMGYLAPALANYMTLL 277 (492)
T ss_dssp -------CCCCEEEEEC---CEECS-SS-SBCCTTSSC----CBHHHHHHTTCCHHHHHHHHHHT
T ss_pred -------CCCceEEEee---eEECC-CC-CEecccCCc----ccHHHHHHCCCCHHHHHHHHHHh
Confidence 4567666654 77787 66 699999842 23332 688888877763
No 42
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=98.73 E-value=6.8e-10 Score=118.52 Aligned_cols=199 Identities=16% Similarity=0.163 Sum_probs=119.9
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceE----
Q 014776 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS---- 153 (419)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~---- 153 (419)
.++=..=.|||.+||||+.+++.+|...+.. +++++-|.| |++. ....+....+..++..+|++++...
T Consensus 130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieD----tD~~--r~~~~~~~~I~~dL~wlGl~~D~~~~~gG 203 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIED----TDTE--RSSREYEQQILESLRWCGLDWDEGPDIGG 203 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCC----CCSS--SCCHHHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecC----cChh--hccHHHHHHHHHHHHHcCCCCCCCCCcCC
Confidence 3444456788999999999999999765544 567777777 3322 2344566678889999999999753
Q ss_pred ---EEEcCCcchh-hHHH-------HHHhccccHHHHhhh--hhHHHH--HHhhC---------C-CC-----ccchhhh
Q 014776 154 ---VFVQSHVRAH-VELM-------WLLSSATPIGWLNKM--IQFKEK--SHKAG---------G-EN-----VGVALLT 203 (419)
Q Consensus 154 ---if~qS~v~~~-~el~-------w~L~~~~~v~~l~r~--~~~k~~--~~~~~---------~-~~-----~~~g~l~ 203 (419)
.|+||+..+. .+.. ..+.|.+|-.+|+++ +.|... ....| . .. .-.|.+.
T Consensus 204 ~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~~~ 283 (592)
T 3al0_C 204 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 283 (592)
T ss_dssp TTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTTTCSEE
T ss_pred CCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeecccceee
Confidence 6899997532 1111 113476665555432 000000 00000 0 00 0112222
Q ss_pred ----------------hhHHHHHhhh---hcccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc
Q 014776 204 ----------------YPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 264 (419)
Q Consensus 204 ----------------YPvLQaADil---~~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~ 264 (419)
||..+-|+++ ..+.++|.-|.|+..+...-+.+.+.|+ ++.|+
T Consensus 284 ~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg------------------~~~P~ 345 (592)
T 3al0_C 284 FDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPV 345 (592)
T ss_dssp CCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTT------------------CCCCB
T ss_pred eccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhC------------------CCCCe
Confidence 3433333322 2356777779999999988888876653 45565
Q ss_pred eecCCCCcccccCCCCCCccccCCCCCCCceecCC------CHHHHHHHhhh
Q 014776 265 PLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 310 (419)
Q Consensus 265 ~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~~KI~k 310 (419)
..+. ++|.+. +| +||||++. .+.|.+ .|+.|..-+..
T Consensus 346 ~~hl---pli~~~-~g-~KLSKR~g----~~~l~~~~~~G~~peal~~~l~~ 388 (592)
T 3al0_C 346 FMHI---PLILGS-DR-TPLSKRHG----ATSVEHFRREGILSRALMNYLAL 388 (592)
T ss_dssp CCEE---CCCBCT-TS-SBCCTTTC----SSBHHHHHHTTCCHHHHHHHHTT
T ss_pred EEEe---eeeeCC-CC-CcccccCC----cccHHHHHHCCCCHHHHHHHHHH
Confidence 5444 377776 66 69999974 234443 68888888776
No 43
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.22 E-value=1.3e-05 Score=83.56 Aligned_cols=200 Identities=17% Similarity=0.145 Sum_probs=113.1
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCce-----
Q 014776 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA----- 152 (419)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~----- 152 (419)
.+....=.|||.+||||..+++.+|.--... +..++=|-|.. + .....+....+..++..+|++++..
T Consensus 14 v~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD----~--~r~~~~~~~~I~~~l~wlGl~~de~p~~gg 87 (481)
T 2o5r_A 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTD----L--ERSEREYEEKLMESLRWLGLLWDEGPDVGG 87 (481)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSS----C--CSGGGHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCC----c--cccHHHHHHHHHHHHHHcCCCCCCCcccCC
Confidence 4566778899999999999999898644333 34333333322 1 1233456667788888999998863
Q ss_pred --EEEEcCCcc----hhhHHHHH----HhccccHHHHhhhh----------hHH----HH-------HH--hhCC-----
Q 014776 153 --SVFVQSHVR----AHVELMWL----LSSATPIGWLNKMI----------QFK----EK-------SH--KAGG----- 194 (419)
Q Consensus 153 --~if~qS~v~----~~~el~w~----L~~~~~v~~l~r~~----------~~k----~~-------~~--~~~~----- 194 (419)
-.|+||+.. ++.+...- +-|.++-.++..+. .|. +. .+ ..|.
T Consensus 88 ~~g~y~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~G~~~~iR 167 (481)
T 2o5r_A 88 DHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVF 167 (481)
T ss_dssp TTCCCBGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHTTCCCEEE
T ss_pred CCCceeeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHHHHhcCCcceEE
Confidence 257899942 22211111 23444433332110 000 00 00 0010
Q ss_pred --------------------CCccchhhh------hhHHHHHhhh---hcccceecccCchHHHHHHHHHHHHHHhhhhC
Q 014776 195 --------------------ENVGVALLT------YPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245 (419)
Q Consensus 195 --------------------~~~~~g~l~------YPvLQaADil---~~~adivpvG~DQ~~h~eLaRdia~r~n~~~g 245 (419)
.+..+|-++ ||..+-|+++ ..+.++|..|.||..|...-..+.+.|+
T Consensus 168 ~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG---- 243 (481)
T 2o5r_A 168 FKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFE---- 243 (481)
T ss_dssp ECCCSSCEEEEETTTEEEEECTTSSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTT----
T ss_pred EEcCCCceEEEecccceeEeccccCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcC----
Confidence 000111111 4444444443 3578999999999999988888877654
Q ss_pred CccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC------CHHHHHHHhhhc
Q 014776 246 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKRC 311 (419)
Q Consensus 246 ~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D------spe~I~~KI~kA 311 (419)
++.|...+.+ ++.+. +| +||||++.+ ..|.| .|+.|..-+...
T Consensus 244 --------------~~~p~~~H~p---lil~~-~G-~KLSKR~g~----~~l~~~~~~G~~peal~~~l~~l 292 (481)
T 2o5r_A 244 --------------KAPPVFAHVS---TILGP-DG-KKLSKRHGA----TSVEAFRDMGYLPEALVNYLALL 292 (481)
T ss_dssp --------------CCCCEEEEEC---CEECT-TS-SBCCGGGSC----CBHHHHHHHTCCHHHHHHHHHTS
T ss_pred --------------CCCCeEEEEe---eEECC-CC-CcccCcCCc----ccHHHHHHCCCCHHHHHHHHHHh
Confidence 4567655543 56665 66 599999742 23332 577777666553
No 44
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.14 E-value=3.6e-05 Score=80.32 Aligned_cols=200 Identities=19% Similarity=0.189 Sum_probs=110.4
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 014776 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (419)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~q 157 (419)
+.++=..=.|||.+||||+..++.+|+..+...-.+++--|. |++ .....+....+..++..+|++++. ..|.|
T Consensus 25 ~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieD---tD~--~R~~~~~~~~i~~dl~wlGl~~d~-~~~~q 98 (490)
T 4g6z_A 25 PVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIED---TDV--ERSSQEAVDAILEGMAWLGLDYDE-GPYYQ 98 (490)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECC---CCG--GGCCHHHHHHHHHHHHHTTCCCSE-EEEEG
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCC---CCc--ccccHHHHHHHHHHHHHcCCCCCC-CCccc
Confidence 344444556779999999999999997665543344443333 221 123356777888999999999986 47899
Q ss_pred CCcc-hhhHHH-------HHHhccccHHHHhhhhhHHH--H-HHhh-----------------CC----------C-Ccc
Q 014776 158 SHVR-AHVELM-------WLLSSATPIGWLNKMIQFKE--K-SHKA-----------------GG----------E-NVG 198 (419)
Q Consensus 158 S~v~-~~~el~-------w~L~~~~~v~~l~r~~~~k~--~-~~~~-----------------~~----------~-~~~ 198 (419)
|+.. .+.+.. +.+.|.++-.+|+.+..-.. . ...+ |. + .+.
T Consensus 99 S~r~~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~~~ 178 (490)
T 4g6z_A 99 MQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGTVA 178 (490)
T ss_dssp GGCHHHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSEEE
T ss_pred ccCHHHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCcEE
Confidence 9943 222221 12458887777654311000 0 0000 00 0 000
Q ss_pred -----chhhh----------------hhHHHHH---hhhhcccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCC
Q 014776 199 -----VALLT----------------YPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254 (419)
Q Consensus 199 -----~g~l~----------------YPvLQaA---Dil~~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~ 254 (419)
-|.+. ||..+-| |=...+.++|.-|.|...+--.-..+.+.|+
T Consensus 179 ~~D~i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG------------- 245 (490)
T 4g6z_A 179 WDDAVKGRVEISNEELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALG------------- 245 (490)
T ss_dssp EEETTTEEEEEEGGGCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTT-------------
T ss_pred EEEeeeeeeeeccccCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcC-------------
Confidence 01111 2333322 2233468999999999776555445555443
Q ss_pred CCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCceecC------CCHHHHHHHhhh
Q 014776 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL------DPKDVIANKIKR 310 (419)
Q Consensus 255 ~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~------Dspe~I~~KI~k 310 (419)
++.|...+.+ +|.+- +| +||||.+. ...|. -.|+.|.+-+..
T Consensus 246 -----~~~P~f~Hlp---Li~~~-~g-~KLSKR~g----~~sl~~~r~~G~~peal~n~l~~ 293 (490)
T 4g6z_A 246 -----GEVPVYAHLP---TVLNE-QG-EKMSKRHG----AMSVMGYRDAGYLPEAVLNYLAR 293 (490)
T ss_dssp -----CCCCEEEEEC---CEECT-TS-SBCCTTTT----CCBHHHHHHTTCCHHHHHHHHHT
T ss_pred -----CCCCeEEEec---ceeCC-CC-CcccCCCC----CcCHHHHHHCCCCHHHHHHHHHH
Confidence 6778766654 77775 56 79999973 33332 268888887765
No 45
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.75 E-value=9.6e-05 Score=78.06 Aligned_cols=176 Identities=21% Similarity=0.196 Sum_probs=90.8
Q ss_pred EEEecC--CCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEc
Q 014776 81 IVSGVQ--PTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (419)
Q Consensus 81 i~tGi~--PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~q 157 (419)
+.+=|. |||.+||||...++.+|..-... +.+++=|-|. ++ .....+....+..++..+|++++ ..++|
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDt----D~--~R~~~e~~~~I~edL~wLGl~wd--~~~~q 168 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDT----DP--RRVDPEAYDMIPADLEWLGVEWD--ETVIQ 168 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----CG--GGCCTTHHHHHHHHHHHHTCCCS--EEEEG
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----Cc--ccccHHHHHHHHHHHHHcCCCCC--CCccc
Confidence 445554 55999999999998888644332 3444444443 21 12233566778888999999997 58999
Q ss_pred CCcc-hhhHHHHH-------HhccccHHHHhhhh-----------hHHHHHH-----hhCCC--------------Cccc
Q 014776 158 SHVR-AHVELMWL-------LSSATPIGWLNKMI-----------QFKEKSH-----KAGGE--------------NVGV 199 (419)
Q Consensus 158 S~v~-~~~el~w~-------L~~~~~v~~l~r~~-----------~~k~~~~-----~~~~~--------------~~~~ 199 (419)
|+.. .+.+..-. +.|.++-.++.... +..+... ..|.+ +.++
T Consensus 169 Sdr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~~ 248 (553)
T 3aii_A 169 SDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPAI 248 (553)
T ss_dssp GGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGGG
T ss_pred ccCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCCC
Confidence 9963 23222211 33666666554210 1100000 00100 0011
Q ss_pred ----------------hh--hhhhHHH---HHhhhhcccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCc
Q 014776 200 ----------------AL--LTYPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258 (419)
Q Consensus 200 ----------------g~--l~YPvLQ---aADil~~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~ 258 (419)
|- ..||..+ +.|....+.|+|..|.|...+-..-.-+...++
T Consensus 249 ~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG----------------- 311 (553)
T 3aii_A 249 RDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLG----------------- 311 (553)
T ss_dssp TTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHT-----------------
T ss_pred CCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcC-----------------
Confidence 11 1355544 445556789999999999876655554455433
Q ss_pred cccCCceecCCCCcccccCCCCCCccccCC
Q 014776 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (419)
Q Consensus 259 ~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~ 288 (419)
++.|...+.+ +| .+ +| .|||||.
T Consensus 312 -~~~P~y~H~~---~L-~~-~g-~KLSKR~ 334 (553)
T 3aii_A 312 -WEPPEFIHYG---RL-KM-DD-VALSTSG 334 (553)
T ss_dssp -CCCCEEECCC---CB-C---------CHH
T ss_pred -CCCCeEEEee---EE-ec-CC-ceechhh
Confidence 4567666554 66 44 66 6999996
No 46
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=97.57 E-value=0.0011 Score=69.59 Aligned_cols=178 Identities=19% Similarity=0.174 Sum_probs=100.6
Q ss_pred ecCCCCcchhhhHHHHHHHHHHHhhcccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceE-------EEE
Q 014776 84 GVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS-------VFV 156 (419)
Q Consensus 84 Gi~PTG~lHLGnylg~ik~~~~lQ~~~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~-------if~ 156 (419)
-=.|||.+||||...++.+|..-....-.+++=-|.. ++. ....+....+..++.-+||+++... .|+
T Consensus 30 APsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDt---D~~--R~~~~~~~~I~~~L~wlGl~wDe~p~~~g~~~py~ 104 (512)
T 4gri_A 30 APSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDT---DQS--RYSPEAENDLYSSLKWLGISFDEGPVVGGDYAPYV 104 (512)
T ss_dssp CCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCC---CTT--SCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCB
T ss_pred CcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC---CCC--cCCHHHHHHHHHHHHHcCCCCCcCCccCCCCCCcc
Confidence 3356699999999999999965444333444433332 321 1112344566677778899987633 478
Q ss_pred cCCcchh----hHHHHH----HhccccHHHHhhhhhHH-------------------HHHHh--hCC----------C-C
Q 014776 157 QSHVRAH----VELMWL----LSSATPIGWLNKMIQFK-------------------EKSHK--AGG----------E-N 196 (419)
Q Consensus 157 qS~v~~~----~el~w~----L~~~~~v~~l~r~~~~k-------------------~~~~~--~~~----------~-~ 196 (419)
||+-.+. .+..+- +.|.++-.++.+...-. +.... .+. + .
T Consensus 105 QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R~k~~~~~~ 184 (512)
T 4gri_A 105 QSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVRFKIPLEGD 184 (512)
T ss_dssp GGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCSSCE
T ss_pred ccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceeeecccccCC
Confidence 9985322 221111 45888877665432211 10000 000 0 0
Q ss_pred c-----cchhhh-----------------hhHHHHHhh---hhcccceecccCchHHHHHHHHHHHHHHhhhhCCccccc
Q 014776 197 V-----GVALLT-----------------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251 (419)
Q Consensus 197 ~-----~~g~l~-----------------YPvLQaADi---l~~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k 251 (419)
+ -.|.+. ||..+=|-. ...+.++|.-|.|...+--.-.-|.+.|+
T Consensus 185 ~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg---------- 254 (512)
T 4gri_A 185 TSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFK---------- 254 (512)
T ss_dssp EEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT----------
T ss_pred ceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcC----------
Confidence 0 011111 232222222 22468999999999887776666666654
Q ss_pred cCCCCCccccCCceecCCCCcccccCCCCCCccccCCC
Q 014776 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (419)
Q Consensus 252 ~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p 289 (419)
++.|...+.+ +|.+- +| +|+||.+.
T Consensus 255 --------~~~P~y~H~p---li~~~-~g-~kLSKR~~ 279 (512)
T 4gri_A 255 --------WKPPIYCHLP---MVMGN-DG-QKLSKRHG 279 (512)
T ss_dssp --------CCCCEEEEEC---CCBCT-TS-SBCCTTTS
T ss_pred --------CCCCeEEecc---hhccc-cc-cccCcccc
Confidence 6778776665 77775 66 69999973
No 47
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=97.34 E-value=0.00044 Score=71.87 Aligned_cols=79 Identities=14% Similarity=0.212 Sum_probs=49.1
Q ss_pred ceEEEecC--CCCcchhhhHHHHHHH--HHHHhhc--ccEEEEE-eCcceecC-------CCCH-HHHHHHHHHHHHHHH
Q 014776 79 KRIVSGVQ--PTGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL 143 (419)
Q Consensus 79 ~~i~tGi~--PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~l 143 (419)
..+++|-- |||.+||||....+.. +.++++. ++|.+.. .|-|..-. ..++ +-..++...+..++.
T Consensus 6 ~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 85 (497)
T 2csx_A 6 KFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWE 85 (497)
T ss_dssp EEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44555554 6699999998876633 4455543 5554332 34333211 1234 445567778889999
Q ss_pred HcCcCCCceEEEEcCC
Q 014776 144 ACGIDNSKASVFVQSH 159 (419)
Q Consensus 144 A~GlDp~k~~if~qS~ 159 (419)
++|++++ .++..++
T Consensus 86 ~lgi~~d--~~~~t~~ 99 (497)
T 2csx_A 86 FLKIEYT--KFIRTTD 99 (497)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HhCCcCC--CCccCCC
Confidence 9999988 4666776
No 48
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=97.21 E-value=0.00087 Score=69.57 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=47.9
Q ss_pred ceEEEecCC--CCcchhhhHHHHHHH--HHHHhhc--ccEEEEE-eCcceecC-------CCCH-HHHHHHHHHHHHHHH
Q 014776 79 KRIVSGVQP--TGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL 143 (419)
Q Consensus 79 ~~i~tGi~P--TG~lHLGnylg~ik~--~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~l 143 (419)
..+++|--| +|.+||||....+.. +.++++. ++|++.. .|-|..-. ..++ +-.+++...+..++.
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 345566655 799999999876633 3445443 5665432 34332211 1234 334456667888999
Q ss_pred HcCcCCCceEEEEcCC
Q 014776 144 ACGIDNSKASVFVQSH 159 (419)
Q Consensus 144 A~GlDp~k~~if~qS~ 159 (419)
++|++++ .++..++
T Consensus 84 ~lgi~~d--~~~~t~~ 97 (500)
T 2d5b_A 84 LLGIAYD--DFIRTTE 97 (500)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HhCCcCC--CCcccCC
Confidence 9999988 4566666
No 49
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=96.43 E-value=0.2 Score=51.63 Aligned_cols=80 Identities=13% Similarity=0.053 Sum_probs=44.4
Q ss_pred ceEE-EecCCCCcchhhhHHHHHHH--HHHHhhc--ccEEEE--EeCcceec------CCCCHHH-HHHHHHHHHHHHHH
Q 014776 79 KRIV-SGVQPTGSIHLGNYLGAIKN--WIALQNS--YETLFF--IVDLHAIT------LPYDTQQ-LSKATRETAAIYLA 144 (419)
Q Consensus 79 ~~i~-tGi~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i~--IaDlhA~t------~~~~~~~-i~~~~~~~~a~~lA 144 (419)
.++| +|--|.|.+||||.-.++.. +.++++. ++|++. +.|+---+ ...++++ .......+..++.+
T Consensus 23 v~~yv~gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~~~ 102 (461)
T 1li5_A 23 VGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDA 102 (461)
T ss_dssp EEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEcCCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3444 55444499999998776522 3334332 566544 24432111 0124433 44556678889999
Q ss_pred cCcCCCceEEEEcCC
Q 014776 145 CGIDNSKASVFVQSH 159 (419)
Q Consensus 145 ~GlDp~k~~if~qS~ 159 (419)
+|+.+.. .+...|+
T Consensus 103 LgI~~~d-~~~r~t~ 116 (461)
T 1li5_A 103 LNILRPD-MEPRATH 116 (461)
T ss_dssp TTCCCCS-BCCBGGG
T ss_pred cCCCCCc-ccccccc
Confidence 9998522 2445555
No 50
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=96.03 E-value=0.0044 Score=66.09 Aligned_cols=41 Identities=20% Similarity=0.253 Sum_probs=28.6
Q ss_pred ceEEEecCCCCcchhhhHHHHH--HHHHHHhhc--ccEEE--EEeCc
Q 014776 79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQNS--YETLF--FIVDL 119 (419)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~i--k~~~~lQ~~--~~~~i--~IaDl 119 (419)
..-|+|--|+|.+||||.-+++ .-+.++.+. ++|++ -|.||
T Consensus 106 ~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 106 LVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDT 152 (592)
T ss_dssp EEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred EEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 3446899999999999987765 335555554 57643 56777
No 51
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=96.01 E-value=0.16 Score=52.61 Aligned_cols=71 Identities=13% Similarity=0.008 Sum_probs=43.3
Q ss_pred EEEecCCCCcchhhhHHHHHHH--HHHHhh--cccEEEEE-eCccee--cC-----CCCH-HHHHHHHHHHHHHHHHcCc
Q 014776 81 IVSGVQPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAI--TL-----PYDT-QQLSKATRETAAIYLACGI 147 (419)
Q Consensus 81 i~tGi~PTG~lHLGnylg~ik~--~~~lQ~--~~~~~i~I-aDlhA~--t~-----~~~~-~~i~~~~~~~~a~~lA~Gl 147 (419)
.++|.-|.|.+||||....+.. +.++++ .++|.+.. .|.|-- +. ..++ +..++++..+..++.++|+
T Consensus 29 YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~~~LgI 108 (462)
T 3tqo_A 29 YVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRV 108 (462)
T ss_dssp EECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred EeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 3478888899999998775522 233333 36665443 343321 00 1244 4445666788889999999
Q ss_pred CCCc
Q 014776 148 DNSK 151 (419)
Q Consensus 148 Dp~k 151 (419)
.++.
T Consensus 109 ~~d~ 112 (462)
T 3tqo_A 109 LSPD 112 (462)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8754
No 52
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=94.31 E-value=0.072 Score=56.24 Aligned_cols=94 Identities=13% Similarity=-0.020 Sum_probs=59.3
Q ss_pred eEEEecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcC
Q 014776 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (419)
Q Consensus 80 ~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS 158 (419)
+.=-+=.|||.+||||.-.++.+|...... +.+++=|-|. ++ .....+....+..++..+|++++. ..++||
T Consensus 28 ~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDT----D~--~R~~~e~~~~I~edL~wLGl~wde-~~~~qS 100 (553)
T 1qtq_A 28 HTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDT----NP--VKEDIEYVESIKNDVEWLGFHWSG-NVRYSS 100 (553)
T ss_dssp EEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----CG--GGCCHHHHHHHHHHHHHTTCCCSS-SCEEGG
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC----Cc--hhcCHHHHHHHHHHHHHcCCCCCC-CCeehc
Confidence 333466677999999999998888654332 3444444443 21 123446677888899999999854 379999
Q ss_pred Ccch-hhHHHHH-------HhccccHHHHh
Q 014776 159 HVRA-HVELMWL-------LSSATPIGWLN 180 (419)
Q Consensus 159 ~v~~-~~el~w~-------L~~~~~v~~l~ 180 (419)
+..+ +.+.+-. +.|.++-.++.
T Consensus 101 er~~~~~~~a~~Li~~G~AY~c~ct~eel~ 130 (553)
T 1qtq_A 101 DYFDQLHAYAIELINKGLAYVDELTPEQIR 130 (553)
T ss_dssp GGHHHHHHHHHHHHHTTSEEEECCCHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCceecCCCHHHHH
Confidence 9643 3332222 23777666553
No 53
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=94.30 E-value=0.03 Score=60.12 Aligned_cols=38 Identities=32% Similarity=0.441 Sum_probs=26.7
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--ccEE--EEEeCc
Q 014776 82 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YETL--FFIVDL 119 (419)
Q Consensus 82 ~tGi~PTG~lHLGnylg~i--k~~~~lQ~~--~~~~--i~IaDl 119 (419)
|+|--|+|.+|+||.-+++ .-+.++.+. ++|+ .-|.||
T Consensus 125 ~~spN~~~~~HiGH~Rs~iigD~laR~l~~~G~~V~~~~~i~D~ 168 (629)
T 2zue_A 125 HTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDL 168 (629)
T ss_dssp CCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECTT
T ss_pred eeCCCCCCCCccchhHHHHHHHHHHHHHHHcCCCceEEecccch
Confidence 6899999999999987655 234444443 6764 356787
No 54
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=93.91 E-value=0.089 Score=58.13 Aligned_cols=91 Identities=13% Similarity=0.056 Sum_probs=58.6
Q ss_pred EecCCCCcchhhhHHHHHHHHHHHhhc-ccEEEEEeCcceecCCCCHHHHHHHHHHHHHHHHHcCcCCCceEEEEcCCcc
Q 014776 83 SGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR 161 (419)
Q Consensus 83 tGi~PTG~lHLGnylg~ik~~~~lQ~~-~~~~i~IaDlhA~t~~~~~~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~v~ 161 (419)
.+=.|||.+||||.-.++.+|..-... +.+++=|-|. ++. ....+....+..++..+||+++. .+++||+..
T Consensus 71 FaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDT----D~~--R~~~e~~~~IledL~wLGl~wde-~~~~qSer~ 143 (851)
T 2hz7_A 71 FPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDT----NPE--LARQEYVDSIADDLKWLGLDWGE-HFYYASDYF 143 (851)
T ss_dssp ECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC----CTT--TCCHHHHHHHHHHHHHHTCCCTT-CEEEGGGGH
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC----Ccc--cccHHHHHHHHHHHHHcCCCCCC-CcccHhhhH
Confidence 366677999999999998888654432 3444444443 222 23446777888889999999854 479999963
Q ss_pred -hhhHHHHH-------HhccccHHHHh
Q 014776 162 -AHVELMWL-------LSSATPIGWLN 180 (419)
Q Consensus 162 -~~~el~w~-------L~~~~~v~~l~ 180 (419)
.+.+..-. +.|.++-.++.
T Consensus 144 d~y~e~a~~LI~~G~AY~c~ct~eel~ 170 (851)
T 2hz7_A 144 DRYYAYAEQLIRQGDAYVESVSPEELS 170 (851)
T ss_dssp HHHHHHHHHHHHTTSEEEECSCHHHHH
T ss_pred HHHHHHHHHHHHCCCcEeecCCHHHHH
Confidence 23222211 34777666554
No 55
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=93.17 E-value=0.29 Score=50.98 Aligned_cols=87 Identities=9% Similarity=0.057 Sum_probs=53.4
Q ss_pred CCceEEEe-cCCCCcchhhhHHHHHHH--HHHHhh--cccEEEEE-eCcceec--C-----CCCH-HHHHHHHHHHHHHH
Q 014776 77 VKKRIVSG-VQPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAIT--L-----PYDT-QQLSKATRETAAIY 142 (419)
Q Consensus 77 ~~~~i~tG-i~PTG~lHLGnylg~ik~--~~~lQ~--~~~~~i~I-aDlhA~t--~-----~~~~-~~i~~~~~~~~a~~ 142 (419)
+++.|-|. --++|.+||||.++.+.. +.++++ .++|++.- .|-|.+- . ..++ +-.+++...+..++
T Consensus 9 k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~ 88 (542)
T 3u1f_A 9 KVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCF 88 (542)
T ss_dssp CCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34555555 368899999999886522 344444 36776544 4445432 1 1244 55567778888999
Q ss_pred HHcCcCCCceEEEEcCCcchhhHH
Q 014776 143 LACGIDNSKASVFVQSHVRAHVEL 166 (419)
Q Consensus 143 lA~GlDp~k~~if~qS~v~~~~el 166 (419)
.++|++.|. |.-..-++|.+.
T Consensus 89 ~~lgi~~D~---~~~T~~~~~~~~ 109 (542)
T 3u1f_A 89 EQMDYSIDY---FIRTTNEQHKAV 109 (542)
T ss_dssp HHHTCCCSE---EEETTCHHHHHH
T ss_pred HHhCCccCc---CccCCCHHHHHH
Confidence 999999874 333444555443
No 56
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=92.78 E-value=0.15 Score=53.37 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=50.7
Q ss_pred ceEEEecCCCCcchhhhHHHHHHHHH--HHhh--cccE-EEEEeCcceecC--CC------------C-----------H
Q 014776 79 KRIVSGVQPTGSIHLGNYLGAIKNWI--ALQN--SYET-LFFIVDLHAITL--PY------------D-----------T 128 (419)
Q Consensus 79 ~~i~tGi~PTG~lHLGnylg~ik~~~--~lQ~--~~~~-~i~IaDlhA~t~--~~------------~-----------~ 128 (419)
.++-+|.-|||.+||||.-.++..++ ++.. .+++ +++-.|.|--.. |. + .
T Consensus 22 yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~~ 101 (523)
T 1irx_A 22 YVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCHE 101 (523)
T ss_dssp EEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSSS
T ss_pred EEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhHH
Confidence 56667999999999999988876532 2222 2555 344466665111 10 1 1
Q ss_pred HHHHHHHHHHHHHHHHcCcCCCceEEEEcCC
Q 014776 129 QQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (419)
Q Consensus 129 ~~i~~~~~~~~a~~lA~GlDp~k~~if~qS~ 159 (419)
+-..++...+..++..+||+++ +|.||+
T Consensus 102 ~~~~~~~~~~~~~l~~Lgi~~D---~~~~se 129 (523)
T 1irx_A 102 SYAEHFMRKFEEEVEKLGIEVD---LLYASE 129 (523)
T ss_dssp SHHHHHHHHHHHHHHTTTCCCE---EEEHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCce---EEechh
Confidence 2234577788888999999987 358998
No 57
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=91.48 E-value=0.64 Score=48.77 Aligned_cols=80 Identities=23% Similarity=0.340 Sum_probs=48.2
Q ss_pred CceEEEe-cCCCCcchhhhHHHHHHH--HHHHhhc--ccEEE-EEeCcceecC-------CCCH-HHHHHHHHHHHHHHH
Q 014776 78 KKRIVSG-VQPTGSIHLGNYLGAIKN--WIALQNS--YETLF-FIVDLHAITL-------PYDT-QQLSKATRETAAIYL 143 (419)
Q Consensus 78 ~~~i~tG-i~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i-~IaDlhA~t~-------~~~~-~~i~~~~~~~~a~~l 143 (419)
+..|.++ .-|||.+||||...++.. +.++++. ++|.+ .-.|.|..-. ..++ +-.++....+..++.
T Consensus 19 ~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 98 (560)
T 3h99_A 19 KILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFA 98 (560)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3444444 455599999999886633 3444443 67654 4455554321 1244 344556667888999
Q ss_pred HcCcCCCceEEEEcCC
Q 014776 144 ACGIDNSKASVFVQSH 159 (419)
Q Consensus 144 A~GlDp~k~~if~qS~ 159 (419)
++|++++. ++.-++
T Consensus 99 ~lgi~~d~--~~~t~~ 112 (560)
T 3h99_A 99 GFNISYDN--YHSTHS 112 (560)
T ss_dssp HTTCCCSE--EEESSS
T ss_pred HcCCCCCC--ceeCCC
Confidence 99999884 444443
No 58
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=91.22 E-value=3 Score=43.23 Aligned_cols=67 Identities=19% Similarity=0.253 Sum_probs=37.9
Q ss_pred ccceecccCchHHHHH---HHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCC
Q 014776 216 QSDFVPVGEDQKQHLE---LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (419)
Q Consensus 216 ~adivpvG~DQ~~h~e---LaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 292 (419)
-+|+...|.||..++. .++-++. | ++.|..++.. ..|- . +| +|||||. +
T Consensus 278 p~d~~~~G~D~~~fh~~~~~a~l~~~------g--------------~~~~~~v~~h--g~l~-~-~G-~KMSKSl---G 329 (542)
T 3u1f_A 278 PADVHVIGKDILKFHAIYWPAFLLSA------G--------------LPLPKKIVAH--GWWT-K-DR-KKISKSL---G 329 (542)
T ss_dssp SCSEEEEEGGGHHHHHTHHHHHHHHH------T--------------CCCCSCEEEE--CCCE-E-TT-BCCBTTT---T
T ss_pred cceEEEecccccccccchhHHHHHhh------c--------------ccccceeccc--ccee-c-CC-ceecccc---C
Confidence 3689999999977542 2222221 2 3445444432 1332 2 55 7999997 6
Q ss_pred CceecCC-----CHHHHHHHhhh
Q 014776 293 SRINLLD-----PKDVIANKIKR 310 (419)
Q Consensus 293 s~I~L~D-----spe~I~~KI~k 310 (419)
|.|...| .+|.++=-+.+
T Consensus 330 Nvi~p~~~i~~ygaD~lR~~l~~ 352 (542)
T 3u1f_A 330 NVFDPVEKAEEFGYDALKYFLLR 352 (542)
T ss_dssp BCCCHHHHHHHHCHHHHHHHHHH
T ss_pred CCCChhHHHhhcCchHHHHHHHh
Confidence 7776544 45555544443
No 59
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=90.32 E-value=1.2 Score=46.45 Aligned_cols=79 Identities=16% Similarity=0.183 Sum_probs=48.8
Q ss_pred ceEEEecC--CCCcchhhhHHHHHHH--HHHHhhc--ccEE-EEEeCcceecC-------CCCH-HHHHHHHHHHHHHHH
Q 014776 79 KRIVSGVQ--PTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAITL-------PYDT-QQLSKATRETAAIYL 143 (419)
Q Consensus 79 ~~i~tGi~--PTG~lHLGnylg~ik~--~~~lQ~~--~~~~-i~IaDlhA~t~-------~~~~-~~i~~~~~~~~a~~l 143 (419)
...++|-= |||.+||||..+++.. +.++++. ++|. +.-.|.|..-. ..++ +-.++....+..++.
T Consensus 26 ~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 105 (536)
T 4dlp_A 26 KYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAE 105 (536)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44555554 4599999998876632 4445443 6764 34466664321 1244 344556667888899
Q ss_pred HcCcCCCceEEEEcCC
Q 014776 144 ACGIDNSKASVFVQSH 159 (419)
Q Consensus 144 A~GlDp~k~~if~qS~ 159 (419)
++|++++ .++.-++
T Consensus 106 ~lgi~~d--~~~~t~~ 119 (536)
T 4dlp_A 106 VLNSSND--DYIRTSE 119 (536)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HcCCCCC--cceeCCC
Confidence 9999988 4555554
No 60
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=89.97 E-value=1.4 Score=46.28 Aligned_cols=73 Identities=11% Similarity=0.070 Sum_probs=47.1
Q ss_pred cCCCCcchhhhHHHHHH--HHHHHhhc--ccEE-EEEeCcceecC-------CCCH-HHHHHHHHHHHHHHHHcCcCCCc
Q 014776 85 VQPTGSIHLGNYLGAIK--NWIALQNS--YETL-FFIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNSK 151 (419)
Q Consensus 85 i~PTG~lHLGnylg~ik--~~~~lQ~~--~~~~-i~IaDlhA~t~-------~~~~-~~i~~~~~~~~a~~lA~GlDp~k 151 (419)
.-|+|.+||||..+++. -+.++++. ++|+ ++-.|.|..-. ..++ +-..+....+..++..+|+..+.
T Consensus 35 py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~ 114 (564)
T 3kfl_A 35 YYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDMNY 114 (564)
T ss_dssp EECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 35789999999877662 25555554 6764 44466665321 1244 44556667788889999999883
Q ss_pred eEEEEcCC
Q 014776 152 ASVFVQSH 159 (419)
Q Consensus 152 ~~if~qS~ 159 (419)
++.-++
T Consensus 115 --~~~t~~ 120 (564)
T 3kfl_A 115 --FIRTTN 120 (564)
T ss_dssp --EEETTS
T ss_pred --cccCCC
Confidence 455543
No 61
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=89.08 E-value=1 Score=48.91 Aligned_cols=74 Identities=14% Similarity=0.243 Sum_probs=49.0
Q ss_pred CceEEEec-CCCCcchhhhHHH-HH--HHHHHHhhc--ccEEEEE-eCcceecC-------CCCH-HHHHHHHHHHHHHH
Q 014776 78 KKRIVSGV-QPTGSIHLGNYLG-AI--KNWIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIY 142 (419)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg-~i--k~~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~ 142 (419)
+..|.+++ -|+|.+||||..+ .+ .-+.++++. ++|++.. .|-|.+-. ..++ +-..++...+..+|
T Consensus 3 ~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~ 82 (722)
T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITF 82 (722)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34566665 6789999999987 44 225566654 6775444 56665421 1245 44556677888899
Q ss_pred HHcCcCCCc
Q 014776 143 LACGIDNSK 151 (419)
Q Consensus 143 lA~GlDp~k 151 (419)
.++|++.+.
T Consensus 83 ~~lgis~D~ 91 (722)
T 1rqg_A 83 QRAKISFDF 91 (722)
T ss_dssp HHHTCCCSE
T ss_pred HHhCCCCCC
Confidence 999999884
No 62
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=84.84 E-value=2.4 Score=43.86 Aligned_cols=72 Identities=14% Similarity=0.210 Sum_probs=44.5
Q ss_pred CCCCcchhhhHHHHHHH--HHHHhhc--ccEEEE-EeCcceecC-------CCCHHH-HHHHHHHHHHHHHHcCcCCCce
Q 014776 86 QPTGSIHLGNYLGAIKN--WIALQNS--YETLFF-IVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSKA 152 (419)
Q Consensus 86 ~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i~-IaDlhA~t~-------~~~~~~-i~~~~~~~~a~~lA~GlDp~k~ 152 (419)
-|+|.+||||....+.. +.++++. ++|.++ -.|-|..-. ..++.+ .+++...+..++..+|++++
T Consensus 22 ~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d-- 99 (524)
T 2x1l_A 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFD-- 99 (524)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCS--
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC--
Confidence 45799999998776522 4445443 566543 244443211 123433 45566788889999999887
Q ss_pred EEEEcCC
Q 014776 153 SVFVQSH 159 (419)
Q Consensus 153 ~if~qS~ 159 (419)
.++..++
T Consensus 100 ~~~~t~~ 106 (524)
T 2x1l_A 100 RFIRTSD 106 (524)
T ss_dssp EEEETTS
T ss_pred CCeecCC
Confidence 4666666
No 63
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=83.88 E-value=0.31 Score=51.42 Aligned_cols=68 Identities=21% Similarity=0.289 Sum_probs=40.7
Q ss_pred cccceecccCchHHHHHH---HHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCC
Q 014776 215 YQSDFVPVGEDQKQHLEL---TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (419)
Q Consensus 215 ~~adivpvG~DQ~~h~eL---aRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~ 291 (419)
+.+|+..+|.||..++.+ ++-.+ .| ++.|..++.. ..| . .+| +|||||.
T Consensus 293 wp~dv~~~GkDii~FH~~~wpa~L~a------~g--------------~~~~~~v~~h--g~v-~-~~G-~KMSKS~--- 344 (564)
T 3kfl_A 293 WPADVHVVGKDILKFHAIYWPAFLMS------AE--------------LPLPERLVSH--GWW-T-KDH-KKISKSL--- 344 (564)
T ss_dssp CSCSEEEEEGGGHHHHHTHHHHHHHH------TT--------------CCCCSCEEEE--CCE-E-ETT-EECCTTT---
T ss_pred CccceEEEeecccchHHHHHHHHHHh------CC--------------CCCCcEEEEc--ccE-e-eCC-ccccccC---
Confidence 357899999999885332 22222 23 3445544432 255 3 366 6999997
Q ss_pred CCceecCC-----CHHHHHHHhhh
Q 014776 292 QSRINLLD-----PKDVIANKIKR 310 (419)
Q Consensus 292 ~s~I~L~D-----spe~I~~KI~k 310 (419)
+|.|.+.| .++.++--+.+
T Consensus 345 GNvV~p~d~i~~~G~DalR~~ll~ 368 (564)
T 3kfl_A 345 GNAFDPVEKAKEFGIDALKYFLMR 368 (564)
T ss_dssp TCCCCHHHHHHHHCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHH
Confidence 68887654 45555555554
No 64
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=83.40 E-value=0.32 Score=50.55 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=38.2
Q ss_pred cccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCc
Q 014776 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (419)
Q Consensus 215 ~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~ 294 (419)
+.+|+..+|.||...+.+ -..|.-.- .| ++.|..++.. .+|.. +| +|||||. +|.
T Consensus 264 ~p~di~~~G~D~~~fh~~-~~~a~l~~--~g--------------~~~~~~v~~h--G~v~~--~G-~KMSKS~---GN~ 318 (524)
T 2x1l_A 264 WPADLHMIGKDIIRFHTV-YWPAFLMS--AG--------------LPLPKRIFAH--GWLLN--RG-EKMSKSI---GNV 318 (524)
T ss_dssp CSCSEEEEEGGGHHHHHT-HHHHHHHH--HT--------------CCCCSCEEEE--CCEEE--CS-CSEETTT---EES
T ss_pred CCCeEEEEeechhHhHHH-HHHHHHHH--CC--------------CCCCcEEEEC--cEEEe--CC-cccCCcC---CCC
Confidence 357999999999853222 12221111 23 2334333221 24332 55 7999997 678
Q ss_pred eecCC-----CHHHHHHHhhh
Q 014776 295 INLLD-----PKDVIANKIKR 310 (419)
Q Consensus 295 I~L~D-----spe~I~~KI~k 310 (419)
|.+.| .++.++--+..
T Consensus 319 v~p~d~i~~~g~DalR~~ll~ 339 (524)
T 2x1l_A 319 VDPVNLVDTFGLDQVRYFLLR 339 (524)
T ss_dssp SCHHHHHHHHCHHHHHHHHHH
T ss_pred CCHHHHHHHcChHHHHHHHHh
Confidence 87654 44555544444
No 65
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=81.68 E-value=0.38 Score=50.24 Aligned_cols=67 Identities=18% Similarity=0.224 Sum_probs=29.3
Q ss_pred ccceecccCchHHHHH---HHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCC
Q 014776 216 QSDFVPVGEDQKQHLE---LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (419)
Q Consensus 216 ~adivpvG~DQ~~h~e---LaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~ 292 (419)
.+|+.+.|.||...+. .++-++ .| ++.|..++.. ..|. + +| +|||||. +
T Consensus 276 p~dv~~~G~D~~~fh~~~~~a~l~a------~g--------------~~~~~~v~~h--g~v~-~-~G-~KMSKS~---G 327 (536)
T 4dlp_A 276 PANAHIIGKDISRFHAVYWPAFLMS------AQ--------------LPLPKRVFAH--GFLF-N-RG-EKMSKSV---G 327 (536)
T ss_dssp SCSEEEEEGGGHHHHHTHHHHHHHH------TT--------------CCCCSCEEEE--CCEE-C---------------
T ss_pred CcceEEeechHHHHHHHHHHHHHHH------CC--------------CCCCcEEEee--eeEe-e-CC-ceecccC---C
Confidence 4789999999988421 133332 23 3444444432 2552 3 66 6999997 6
Q ss_pred CceecCC-----CHHHHHHHhhh
Q 014776 293 SRINLLD-----PKDVIANKIKR 310 (419)
Q Consensus 293 s~I~L~D-----spe~I~~KI~k 310 (419)
|.|.+.| .++.++--+.+
T Consensus 328 Nvi~p~d~i~~~GaDalR~~ll~ 350 (536)
T 4dlp_A 328 NVIDPFELVERYGLDQLRYFLMR 350 (536)
T ss_dssp --CCHHHHHHHHCHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCcHHHHHHHHh
Confidence 8887654 44555544444
No 66
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=81.19 E-value=0.63 Score=51.11 Aligned_cols=71 Identities=25% Similarity=0.264 Sum_probs=41.0
Q ss_pred cccceecccCchHH-HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCC
Q 014776 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (419)
Q Consensus 215 ~~adivpvG~DQ~~-h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 293 (419)
+.+|+..+|.||.. |+...+-...-+ ++. .+.|..++.. .+|.. +| +|||||. +|
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~---~~~-------------~~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAI---FRE-------------EHWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHH---SCG-------------GGSCCEEEEE--CCEEE--TT-BCCCTTT---TC
T ss_pred CCceEEeecccccccHHHHHHHHHHHH---cCc-------------cccccEEEEE--eEEEe--CC-eehhhcC---CC
Confidence 46899999999965 666543322211 221 1234433332 23332 56 7999997 68
Q ss_pred ceecCC-----CHHHHHHHhh
Q 014776 294 RINLLD-----PKDVIANKIK 309 (419)
Q Consensus 294 ~I~L~D-----spe~I~~KI~ 309 (419)
.|.+.| .++.++=-+.
T Consensus 658 vv~p~dli~~yGaDalR~~ll 678 (810)
T 1wkb_A 658 VLNFIDAIEENGADVVRLYIM 678 (810)
T ss_dssp CCBHHHHHHHHCHHHHHHHHH
T ss_pred cCCHHHHHHHcChHHHHHHHH
Confidence 887655 4555555554
No 67
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=80.61 E-value=0.35 Score=49.99 Aligned_cols=39 Identities=26% Similarity=0.543 Sum_probs=26.7
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--ccE--EEEEeCcc
Q 014776 82 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YET--LFFIVDLH 120 (419)
Q Consensus 82 ~tGi~PTG~lHLGnylg~i--k~~~~lQ~~--~~~--~i~IaDlh 120 (419)
|+.--|||.+|+||.-+++ .-+.++.+. ++| ...|.||=
T Consensus 36 ~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G 80 (464)
T 3fnr_A 36 YVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAG 80 (464)
T ss_dssp CCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCH
T ss_pred eCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCcc
Confidence 5788899999999987655 223444443 555 46778863
No 68
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=78.34 E-value=0.85 Score=51.20 Aligned_cols=71 Identities=25% Similarity=0.263 Sum_probs=41.1
Q ss_pred cccceecccCchHH-HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCC
Q 014776 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (419)
Q Consensus 215 ~~adivpvG~DQ~~-h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 293 (419)
+-+|+..+|.||.. |+...+-...- .++. .+.|..++.. .+|.. +| +|||||. +|
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a---~~~~-------------~~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVA---IFRE-------------EHWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHH---HSCS-------------TTSCCCEEEE--CCEEE--SS-SCCCTTT---CC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHH---HcCc-------------ccccceEEEe--eEEee--CC-EEccccc---cC
Confidence 46899999999964 65554322221 1221 1224333332 24432 56 7999997 68
Q ss_pred ceecCC-----CHHHHHHHhh
Q 014776 294 RINLLD-----PKDVIANKIK 309 (419)
Q Consensus 294 ~I~L~D-----spe~I~~KI~ 309 (419)
.|.+.| .++.++=-+.
T Consensus 658 vv~p~d~i~~yGaDalR~~ll 678 (967)
T 1wz2_A 658 VLNFIDAIEENGADVVRLYIM 678 (967)
T ss_dssp CCBHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHhChHHHHHHHH
Confidence 887654 5666666554
No 69
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=77.75 E-value=2.1 Score=47.88 Aligned_cols=70 Identities=27% Similarity=0.287 Sum_probs=40.4
Q ss_pred hcccceecccCchHH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCC
Q 014776 214 LYQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAP 289 (419)
Q Consensus 214 ~~~adivpvG~DQ~~---h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p 289 (419)
.+-+|+...|.||.. |-.+...++- .| ..| ..++.. .+|... +| +|||||.
T Consensus 546 ~~P~Dl~~~G~D~~r~wf~~~l~~s~~~-----~g---------------~~Pfk~v~~h--G~V~d~-~G-~KMSKSl- 600 (917)
T 1ffy_A 546 SFPADMYLEGSDQYRGWFNSSITTSVAT-----RG---------------VSPYKFLLSH--GFVMDG-EG-KKMSKSL- 600 (917)
T ss_dssp CSSBSEEEEEGGGGTTHHHHHHHHHHHH-----HS---------------SCSBSEEEEE--CCEECT-TS-CCCCSSS-
T ss_pred CCCceEEEEEecccccHHHHHHHHHHHh-----hC---------------CCcccceeEe--eeEEcC-CC-cCccccc-
Confidence 356899999999973 4444444441 23 123 223322 255443 56 6999997
Q ss_pred CCCCceecCC-----CHHHHHHHhhh
Q 014776 290 SDQSRINLLD-----PKDVIANKIKR 310 (419)
Q Consensus 290 ~~~s~I~L~D-----spe~I~~KI~k 310 (419)
+|.|...| .++.++--+..
T Consensus 601 --GNvV~P~dvi~~yGaDalR~~lls 624 (917)
T 1ffy_A 601 --GNVIVPDQVVKQKGADIARLWVSS 624 (917)
T ss_dssp --SCCCCHHHHHHHTCHHHHHHHHHT
T ss_pred --CCcCChHHHHHhCCHHHHHHHHhc
Confidence 68887654 45555555543
No 70
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=77.69 E-value=1 Score=49.53 Aligned_cols=72 Identities=24% Similarity=0.335 Sum_probs=39.3
Q ss_pred cccceecccCchHH-HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCC
Q 014776 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (419)
Q Consensus 215 ~~adivpvG~DQ~~-h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 293 (419)
+-+|+...|.||.. |+.....+..-+ +|. ..+..++.. ..+... +| +|||||. +|
T Consensus 543 ~P~dl~~~G~D~~r~w~~~~~~~~~~~---~~~--------------~pf~~v~~h--g~vl~~-~G-~KMSKS~---GN 598 (821)
T 1ile_A 543 FPADFIAEGIDQTRGWFNSLHQLGVML---FGS--------------IAFKNVICH--GLILDE-KG-QKMSKSK---GN 598 (821)
T ss_dssp SSBSBEEEEGGGGGTHHHHHHHHHHHH---HSS--------------CSBSEEEEE--CCEECT-TS-SCCCTTT---TC
T ss_pred CCcccccchhhhhccHHHHHHHHHHHh---cCC--------------CCcceEEEE--eeEECC-CC-CCCCccC---CC
Confidence 46899999999974 332222222221 231 112233322 244443 56 7999997 67
Q ss_pred ceecCC-----CHHHHHHHhhh
Q 014776 294 RINLLD-----PKDVIANKIKR 310 (419)
Q Consensus 294 ~I~L~D-----spe~I~~KI~k 310 (419)
.|.+.| .++.++=-+..
T Consensus 599 vV~p~dli~~yGaDalR~~ll~ 620 (821)
T 1ile_A 599 VVDPWDIIRKFGADALRWYIYV 620 (821)
T ss_dssp CCCHHHHHTTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHhCHHHHHHHHHh
Confidence 887654 55666655554
No 71
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=77.34 E-value=4.3 Score=45.11 Aligned_cols=73 Identities=15% Similarity=0.069 Sum_probs=47.1
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEEEEE-eCcceecC-------CCCH-HHHHHHHHHHHHHHH
Q 014776 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL 143 (419)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~l 143 (419)
++.+++++ -|||.+||||..+.+.. +.++++. ++|.+.. -|-|.+-. ..++ +-..+++..+..++.
T Consensus 54 ~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~ 133 (880)
T 4arc_A 54 KYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLK 133 (880)
T ss_dssp EEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45677775 67899999998876522 4455543 5665433 55555421 1233 444566778888999
Q ss_pred HcCcCCC
Q 014776 144 ACGIDNS 150 (419)
Q Consensus 144 A~GlDp~ 150 (419)
++|+..+
T Consensus 134 ~LGis~D 140 (880)
T 4arc_A 134 MLGFGYD 140 (880)
T ss_dssp HTTCCCC
T ss_pred HhCCCcC
Confidence 9998877
No 72
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=77.13 E-value=0.75 Score=51.08 Aligned_cols=72 Identities=25% Similarity=0.316 Sum_probs=43.1
Q ss_pred cccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCC-ceecCCCCcccccCCCCCCccccCCCCCCC
Q 014776 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (419)
Q Consensus 215 ~~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P-~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s 293 (419)
|-+|+...|.||.. +=++|.++.-+. ..| ..| ..++.. .++... +| +|||||. +|
T Consensus 480 ~P~d~~v~G~Dii~-~W~a~~~~~~~~-~~g---------------~~Pfk~v~~h--G~vld~-~G-~KMSKSl---GN 535 (862)
T 1gax_A 480 YPGDVLVTGYDILF-LWVSRMEVSGYH-FMG---------------ERPFKTVLLH--GLVLDE-KG-QKMSKSK---GN 535 (862)
T ss_dssp CSBSCEEEEGGGTT-TTHHHHHHHHHH-HSS---------------SCSBSEEEEE--CCEECT-TS-CBCCTTT---TC
T ss_pred CCceEEecCccccc-cHHHHHHHHHHH-hcC---------------CCcccEEEEe--eeEEcC-CC-CCccccC---CC
Confidence 45899999999975 345677765542 123 124 223322 255544 56 6999997 67
Q ss_pred ceecCC-----CHHHHHHHhhh
Q 014776 294 RINLLD-----PKDVIANKIKR 310 (419)
Q Consensus 294 ~I~L~D-----spe~I~~KI~k 310 (419)
.|...| .+|.++--+..
T Consensus 536 vIdP~dli~~yGaDalR~~ll~ 557 (862)
T 1gax_A 536 VIDPLEMVERYGADALRFALIY 557 (862)
T ss_dssp CCCHHHHHHHHCHHHHHHHHHH
T ss_pred CCCHHHHHHHcChHHHHHHHHh
Confidence 887654 44555554444
No 73
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=76.36 E-value=10 Score=38.03 Aligned_cols=79 Identities=15% Similarity=-0.005 Sum_probs=48.3
Q ss_pred eEEEecCCCCcchhhhHHHHHH--HHHHHhhc--ccEE-EEEeCcceecC-------CCCH-HHHHHHHHHHHHHHHHcC
Q 014776 80 RIVSGVQPTGSIHLGNYLGAIK--NWIALQNS--YETL-FFIVDLHAITL-------PYDT-QQLSKATRETAAIYLACG 146 (419)
Q Consensus 80 ~i~tGi~PTG~lHLGnylg~ik--~~~~lQ~~--~~~~-i~IaDlhA~t~-------~~~~-~~i~~~~~~~~a~~lA~G 146 (419)
..++|.-|.|.+||||..+++. -+.++++. ++|. +.-.|.|..-. ..++ +-..++...+.+++.++|
T Consensus 42 ~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~Lg 121 (414)
T 3c8z_A 42 MYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAALR 121 (414)
T ss_dssp EEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 3456666779999999877652 23444443 6764 44466664211 1244 334555667888999999
Q ss_pred cC-CCceEEEEcCCc
Q 014776 147 ID-NSKASVFVQSHV 160 (419)
Q Consensus 147 lD-p~k~~if~qS~v 160 (419)
+. ++ .++..|++
T Consensus 122 i~~~d--~~~r~t~~ 134 (414)
T 3c8z_A 122 VLPPH--DYVAATDA 134 (414)
T ss_dssp CCCCS--EEEEGGGC
T ss_pred CCCCc--ceecccch
Confidence 98 65 35555553
No 74
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=76.02 E-value=0.9 Score=45.95 Aligned_cols=30 Identities=27% Similarity=0.097 Sum_probs=19.5
Q ss_pred HHhhhhcccceecccCchHH-HHHHHHHHHH
Q 014776 209 ASDILLYQSDFVPVGEDQKQ-HLELTRELAE 238 (419)
Q Consensus 209 aADil~~~adivpvG~DQ~~-h~eLaRdia~ 238 (419)
+...+-...|+.++|.|+.. |++...-...
T Consensus 237 ~~~~~g~~~di~~~G~D~~~~H~~~~~a~~~ 267 (414)
T 3c8z_A 237 ALTRIGTGLDIQGGGSDLIFPHHEYSAAHAE 267 (414)
T ss_dssp HHHHTCSCEEEEEEEGGGTTTHHHHHHHHHH
T ss_pred HHHhcCCCceEEEeccccccHHHHHHHHHHH
Confidence 44444345789999999877 7665544433
No 75
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=76.01 E-value=12 Score=38.88 Aligned_cols=74 Identities=15% Similarity=0.114 Sum_probs=44.6
Q ss_pred CceEE-EecCCCCcchhhhHHHHHHH--HHHHhh--cccEEEE--EeCc---------c--eecC-----CCCH-HHHHH
Q 014776 78 KKRIV-SGVQPTGSIHLGNYLGAIKN--WIALQN--SYETLFF--IVDL---------H--AITL-----PYDT-QQLSK 133 (419)
Q Consensus 78 ~~~i~-tGi~PTG~lHLGnylg~ik~--~~~lQ~--~~~~~i~--IaDl---------h--A~t~-----~~~~-~~i~~ 133 (419)
+.++| +|--|.|.+||||....+.. +.++++ .++|.+. |.|+ | .+.. ..++ +..++
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~ 121 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEF 121 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHH
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHH
Confidence 44554 56555599999998775521 233333 3788766 3444 2 2222 1244 45567
Q ss_pred HHHHHHHHHHHcCcCCCc
Q 014776 134 ATRETAAIYLACGIDNSK 151 (419)
Q Consensus 134 ~~~~~~a~~lA~GlDp~k 151 (419)
++..+..++.++|+.++.
T Consensus 122 ~~~~f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 122 FTEAFFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 778889999999998765
No 76
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=74.51 E-value=4.6 Score=44.77 Aligned_cols=73 Identities=19% Similarity=0.140 Sum_probs=43.8
Q ss_pred CceEEEe-cCCCCcchhhhHHHHHHH--HHHHhhc--ccEEE-EEeCcceec------------C--CCCH---------
Q 014776 78 KKRIVSG-VQPTGSIHLGNYLGAIKN--WIALQNS--YETLF-FIVDLHAIT------------L--PYDT--------- 128 (419)
Q Consensus 78 ~~~i~tG-i~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i-~IaDlhA~t------------~--~~~~--------- 128 (419)
++.|++| --|||.+|+||.++.+.+ +.+++.. ++|.+ .--|-|.+- + +.+.
T Consensus 35 ~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Glp~e~~vek~l~~~g~~~~~~~~~~f~~~~ 114 (862)
T 1gax_A 35 PFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGIATQVVVERLLLKEGKTRHDLGREKFLERV 114 (862)
T ss_dssp EEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTHHHHHHHHTTTTTTTSCCSCCCTTHHHHHH
T ss_pred cEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCcHHHHHHHHHHHHcCCChHHcCHHHHHHHH
Confidence 4566666 356899999999875522 4455554 56644 446777651 1 1111
Q ss_pred -HHHHHHHHHHHHHHHHcCcCCC
Q 014776 129 -QQLSKATRETAAIYLACGIDNS 150 (419)
Q Consensus 129 -~~i~~~~~~~~a~~lA~GlDp~ 150 (419)
+-..++...+..++..+|+..|
T Consensus 115 ~~~~~~~~~~~~~q~~rlG~s~D 137 (862)
T 1gax_A 115 WQWKEESGGTILKQLKRLGASAD 137 (862)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHhCcccc
Confidence 2234455667778888897655
No 77
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=73.01 E-value=1.2 Score=46.65 Aligned_cols=65 Identities=23% Similarity=0.216 Sum_probs=37.3
Q ss_pred eecccCchHHHHH---HHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCCCCCCccccCCCCCCCce
Q 014776 219 FVPVGEDQKQHLE---LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (419)
Q Consensus 219 ivpvG~DQ~~h~e---LaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I 295 (419)
+..+|.||..++- .++-.+ .| ++.|..++.. .+|.. +| +|||||. +|.|
T Consensus 303 ~~~~G~D~~~fh~~~~~a~l~~------~g--------------~~~p~~v~~h--g~v~~--~G-~KMSKS~---GNvv 354 (560)
T 3h99_A 303 YHFIGKDIVYFLSLFWPAMLEG------SN--------------FRKPSNLFVH--GYVTV--NG-AKMSKSR---GTFI 354 (560)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHH------TT--------------BCCCSEEEEE--CCEEE--TT-EECCTTT---TCCC
T ss_pred EEEeccccchhHHHHHHHHHHh------CC--------------CCCCcEEEEE--eEEEe--CC-eeccccC---CCcC
Confidence 7778999998432 122111 22 4566544422 13322 56 6999997 6788
Q ss_pred ecCC-----CHHHHHHHhhhc
Q 014776 296 NLLD-----PKDVIANKIKRC 311 (419)
Q Consensus 296 ~L~D-----spe~I~~KI~kA 311 (419)
.+.| .++.++--+.+.
T Consensus 355 ~p~d~i~~~GaDalR~~ll~~ 375 (560)
T 3h99_A 355 KASTWLNHFDADSLRYYYTAK 375 (560)
T ss_dssp BHHHHHHHSCHHHHHHHHHHH
T ss_pred CHHHHHHHcCcHHHHHHHHHh
Confidence 7654 455555555554
No 78
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=66.05 E-value=3.3 Score=45.99 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=20.2
Q ss_pred cccceecccCch-HHHHHHHHHHHHHH
Q 014776 215 YQSDFVPVGEDQ-KQHLELTRELAERV 240 (419)
Q Consensus 215 ~~adivpvG~DQ-~~h~eLaRdia~r~ 240 (419)
+-+|+...|.|| .-|+-.+|-+..-+
T Consensus 530 ~P~D~yi~G~d~~ilhl~y~r~~~~~l 556 (878)
T 2v0c_A 530 MPVDQYIGGVEHAVLHLLYSRFFTKFL 556 (878)
T ss_dssp CSBSEEECCGGGTTTHHHHHHHHHHHH
T ss_pred CCCeEEEechHHHHHHHHHHHHHHHHH
Confidence 469999999999 67777777766533
No 79
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=65.86 E-value=8.8 Score=42.61 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=45.1
Q ss_pred CceEEEe-cCCCCcchhhhHHHHHHH--HHHHhhc--ccEEEEE-eCcceecC-------CCCH-HHHHHHHHHHHHHHH
Q 014776 78 KKRIVSG-VQPTGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAITL-------PYDT-QQLSKATRETAAIYL 143 (419)
Q Consensus 78 ~~~i~tG-i~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i~I-aDlhA~t~-------~~~~-~~i~~~~~~~~a~~l 143 (419)
++.+++| --|+|.+||||..+.+.. +.++++. ++|.+.. -|-|.+-. ..++ +-..+++..+..++.
T Consensus 34 k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~ 113 (878)
T 2v0c_A 34 KQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLR 113 (878)
T ss_dssp EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4667777 445699999999876522 4445443 5665433 44444321 1233 445667778888999
Q ss_pred HcCcCCC
Q 014776 144 ACGIDNS 150 (419)
Q Consensus 144 A~GlDp~ 150 (419)
.+|+..+
T Consensus 114 ~LGi~~D 120 (878)
T 2v0c_A 114 LMGILYD 120 (878)
T ss_dssp HTTCCCC
T ss_pred HhCCccC
Confidence 9998655
No 80
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Probab=61.84 E-value=14 Score=35.94 Aligned_cols=26 Identities=38% Similarity=0.464 Sum_probs=22.5
Q ss_pred ccceecccCchHHHHHHHHHHHHHHh
Q 014776 216 QSDFVPVGEDQKQHLELTRELAERVN 241 (419)
Q Consensus 216 ~adivpvG~DQ~~h~eLaRdia~r~n 241 (419)
++|..-.|..-.|.+.+-|.+++.+|
T Consensus 152 ~P~~a~FG~Kd~qql~~lr~mv~dl~ 177 (301)
T 3cov_A 152 RPDRVFFGEKDYQQLVLIRQLVADFN 177 (301)
T ss_dssp CCSEEEEETTSHHHHHHHHHHHHHTT
T ss_pred CCCeEEECCCcccCHHHHHHHHHHcC
Confidence 78888888888899999999998876
No 81
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=61.77 E-value=8 Score=42.28 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=25.7
Q ss_pred ceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEEEEE-eCccee
Q 014776 79 KRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLFFI-VDLHAI 122 (419)
Q Consensus 79 ~~i~tGi-~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i~I-aDlhA~ 122 (419)
+.|.+|. -|||.+||||.++.+.. +.++++. ++|.+.. -|.|.+
T Consensus 36 ~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~ 85 (810)
T 1wkb_A 36 FYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85 (810)
T ss_dssp EEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBS
T ss_pred EEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCC
Confidence 4444443 35799999999886632 4455553 5665432 355544
No 82
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=59.62 E-value=6.1 Score=43.96 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=20.8
Q ss_pred cccceecccCch-HHHHHHHHHHHHHHh
Q 014776 215 YQSDFVPVGEDQ-KQHLELTRELAERVN 241 (419)
Q Consensus 215 ~~adivpvG~DQ-~~h~eLaRdia~r~n 241 (419)
+-+|+-.+|.|| .-|+-.+|-+...+.
T Consensus 542 ~PvD~yigG~EHailHllyaRf~~~~L~ 569 (880)
T 4arc_A 542 LPVDIYIGGIEHAIMHLLYFRFFHKLMR 569 (880)
T ss_dssp CSEEEEECCGGGTTTHHHHHHHHHHHHH
T ss_pred CCceEeecchhhHHHHHHHHHHHHHHHH
Confidence 468999999999 568888886655443
No 83
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=58.93 E-value=3.9 Score=42.58 Aligned_cols=32 Identities=22% Similarity=0.089 Sum_probs=20.4
Q ss_pred HHHHhhhhcccceecccCch-HHHHHHHHHHHH
Q 014776 207 LMASDILLYQSDFVPVGEDQ-KQHLELTRELAE 238 (419)
Q Consensus 207 LQaADil~~~adivpvG~DQ-~~h~eLaRdia~ 238 (419)
-|+...|--..|+..+|.|. .+|++.-.-...
T Consensus 244 am~~~~lg~~~DIH~gG~DLifpHheneiAqs~ 276 (501)
T 3sp1_A 244 AMNLEYFKDALDIHLGGVDHIGVHHINEIAIAE 276 (501)
T ss_dssp HHHHHHTTTCCCEEEEEGGGTTTHHHHHHHHHH
T ss_pred HHHHHHcCCCceEEeeccccccchHHHHHHHHH
Confidence 34555554567999999996 467665433333
No 84
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=56.59 E-value=8.6 Score=37.08 Aligned_cols=65 Identities=17% Similarity=0.293 Sum_probs=42.2
Q ss_pred ccceecccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCC--CCCCccccCCCCCCC
Q 014776 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT--DGLSKMSKSAPSDQS 293 (419)
Q Consensus 216 ~adivpvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~--dg~~KMSKS~p~~~s 293 (419)
.+|..-.|..-.|.+.+-|.+++.+| | |.-++ -+|-.+ || -.||++
T Consensus 141 ~p~~~~FG~Kd~qql~~l~~m~~dl~------------------~--~V~iv-----~vp~vr~~dG-laiSSr------ 188 (283)
T 3ag6_A 141 MPDYAYFGKKDAQQLAIVEQMVKDFN------------------H--AVEII-----GIDIVREADG-LAKSSR------ 188 (283)
T ss_dssp CCSEEEEEGGGHHHHHHHHHHHHHTT------------------C--CCEEE-----EECCCBCTTS-CBCCGG------
T ss_pred cCceEEECCCCccCHHHHHHHHHHcC------------------C--eEEEE-----ecCcEEeCCC-CEecCC------
Confidence 67777778888888999999988866 2 22221 011222 45 599987
Q ss_pred ceecCCCHHHHHHHhhhcc
Q 014776 294 RINLLDPKDVIANKIKRCK 312 (419)
Q Consensus 294 ~I~L~Dspe~I~~KI~kA~ 312 (419)
.+||++...+..-.|.++.
T Consensus 189 n~yLs~~eR~~A~~l~~~L 207 (283)
T 3ag6_A 189 NVYLTEQERQEAVHLSKSL 207 (283)
T ss_dssp GGGCCHHHHHHTHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHH
Confidence 4888776666666665555
No 85
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=56.46 E-value=3.8 Score=42.60 Aligned_cols=71 Identities=27% Similarity=0.357 Sum_probs=34.5
Q ss_pred cccceecccCchHH---HHHHHHHHHHHHhhhhCCccccccCCCCCccccCCceecCCCCcccccCC-CCCCccccCCCC
Q 014776 215 YQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT-DGLSKMSKSAPS 290 (419)
Q Consensus 215 ~~adivpvG~DQ~~---h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~~l~~~~~~~l~sL~-dg~~KMSKS~p~ 290 (419)
+..++-++|.|+.. ......+++.. .+| .+.|..++.+ +|.. . +| +|||||.
T Consensus 229 l~~~vd~~G~Dh~~~h~s~~~~~~i~~~---alG--------------~~~p~~~h~~---~i~~-~g~g-~KmSKs~-- 284 (523)
T 1irx_A 229 FGVDFEPAGKDHLVAGSSYDTGKEIIKE---VYG--------------KEAPLSLMYE---FVGI-KGQK-GKMSGSK-- 284 (523)
T ss_dssp SCCCBCCEEHHHHSTTSHHHHHHHHHHH---HHC--------------CCCCBCCEEC---CEEE-SCC-----------
T ss_pred cCCCCcCCCcCccCCCcchhhHHHHHHH---HhC--------------CCCCeEEEEE---EEEe-CCCC-CCCCCcC--
Confidence 44556688999887 22334566632 344 3456444433 4433 2 24 7999997
Q ss_pred CCCceecCC-----CHHHHHHHhhh
Q 014776 291 DQSRINLLD-----PKDVIANKIKR 310 (419)
Q Consensus 291 ~~s~I~L~D-----spe~I~~KI~k 310 (419)
+|.|.+.| .|+.++.-+.+
T Consensus 285 -Gn~i~~~~~~~~~~pdalR~~l~~ 308 (523)
T 1irx_A 285 -GNVILLSDLYEVLEPGLVRFIYAR 308 (523)
T ss_dssp --CCCCHHHHHTTSCHHHHHHHHHS
T ss_pred -CCCCCHHHHHHHcCHHHHHHHHHh
Confidence 56665443 67777777765
No 86
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=50.30 E-value=55 Score=31.03 Aligned_cols=81 Identities=14% Similarity=0.252 Sum_probs=58.6
Q ss_pred CceEEEecCCCCcchhhhHHHHHHHHHHHhhcc-cEEEEEeCcceecC----CCCHHHHHHHH--------HHHHHHHHH
Q 014776 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITL----PYDTQQLSKAT--------RETAAIYLA 144 (419)
Q Consensus 78 ~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~~-~~~i~IaDlhA~t~----~~~~~~i~~~~--------~~~~a~~lA 144 (419)
+..++.||-|=-.-|=+.++-.+-.|. +..+ +|.|+++|.++--+ ..++.+-++.+ +.+...|.+
T Consensus 29 g~HallGISpgNsyFs~d~L~~Li~Wa--~~~F~~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i~ral~~ 106 (257)
T 3oqi_A 29 RRHVLVGISPFNSRFSEDYIHRLIAWA--VREFQSVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFAEKALEA 106 (257)
T ss_dssp TCEEEEEECTTSTTCCHHHHHHHHHHH--HHHCSEEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCcccCHHHHHHHHHHH--HccCCceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999998899999998888894 6665 69999999866543 23444333322 345666777
Q ss_pred cCcCCCceEEEEcCCcch
Q 014776 145 CGIDNSKASVFVQSHVRA 162 (419)
Q Consensus 145 ~GlDp~k~~if~qS~v~~ 162 (419)
+|++++ .++.=||+..
T Consensus 107 ~g~~~~--~v~~~Sd~~~ 122 (257)
T 3oqi_A 107 HGGNPE--DIHTFSDFAN 122 (257)
T ss_dssp HTCCTT--CEEETTTTTT
T ss_pred cCCCcc--cceeHHHhhc
Confidence 899887 6777788743
No 87
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=49.57 E-value=15 Score=40.91 Aligned_cols=71 Identities=14% Similarity=0.212 Sum_probs=43.4
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEE-EEEeCcceecC----------CC--CHHHHHH------
Q 014776 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAITL----------PY--DTQQLSK------ 133 (419)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~-i~IaDlhA~t~----------~~--~~~~i~~------ 133 (419)
++.+.+|. -|||.+||||.+..+.+ +.+++.. ++|. +.--|-|.+-. +. +++++++
T Consensus 49 ~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~ 128 (917)
T 1ffy_A 49 TFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFA 128 (917)
T ss_dssp BCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHH
T ss_pred ceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHH
Confidence 46777776 57899999999875532 4455554 5654 44467776632 11 2343333
Q ss_pred --HHHHHHHHHHHcCcC
Q 014776 134 --ATRETAAIYLACGID 148 (419)
Q Consensus 134 --~~~~~~a~~lA~GlD 148 (419)
++..+..++..+|+.
T Consensus 129 ~~~~~~~~~~~~rlG~~ 145 (917)
T 1ffy_A 129 LEQIELQKKDFRRLGVR 145 (917)
T ss_dssp HHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHhCeE
Confidence 334566677888884
No 88
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=47.46 E-value=6.1 Score=42.81 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=28.6
Q ss_pred ccCCceecCCCCcccccCCCCCCccccCCCCCCCceecCC-----CHHHHHHHhhhc
Q 014776 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD-----PKDVIANKIKRC 311 (419)
Q Consensus 260 f~~P~~l~~~~~~~l~sL~dg~~KMSKS~p~~~s~I~L~D-----spe~I~~KI~kA 311 (419)
++.|..++.. .+|.- +| +|||||. +|.|+..| .++.++--+...
T Consensus 326 ~~~Pk~v~~h--G~v~~--~G-~KMSKS~---GNvV~p~d~i~~ygaDalR~~ll~~ 374 (722)
T 1rqg_A 326 WNLPYDIPAN--EYLTL--EG-KKFSTSR---NWAIWVHEFLDVFPADYLRYYLTTI 374 (722)
T ss_dssp BCCCSBCCEE--CCEEE--TT-EECBTTT---TBSCBHHHHTTTSCHHHHHHHHHHT
T ss_pred CCCCCEEEEe--eeEEe--CC-eeeeeeC---CCcCCHHHHHHhcCchHHHHHHHhc
Confidence 4556555432 24332 56 6999997 68887654 677777777765
No 89
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=46.65 E-value=8.4 Score=42.27 Aligned_cols=45 Identities=16% Similarity=0.174 Sum_probs=29.5
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEE-EEEeCccee
Q 014776 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETL-FFIVDLHAI 122 (419)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~-i~IaDlhA~ 122 (419)
++.++.|. -|||.+|+||.++.+.+ +.+++.. ++|. +.--|-|.+
T Consensus 39 ~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Gl 89 (821)
T 1ile_A 39 RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGL 89 (821)
T ss_dssp BCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHH
T ss_pred cEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCc
Confidence 46666776 78899999999875522 4445443 5664 444666665
No 90
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=45.99 E-value=5 Score=41.25 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=3.6
Q ss_pred ecccCchHHHHHH
Q 014776 220 VPVGEDQKQHLEL 232 (419)
Q Consensus 220 vpvG~DQ~~h~eL 232 (419)
||||.||++|.|-
T Consensus 237 vp~~~d~~~~~~~ 249 (451)
T 3foc_A 237 VPLPVGTGNEDAA 249 (451)
T ss_dssp CBCC---------
T ss_pred cccccccccchhh
Confidence 6999999999544
No 91
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=44.79 E-value=15 Score=39.11 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=27.2
Q ss_pred EEecCCCCcchhhhHHHHH--HHHHHHhhc--ccEE--EEEeCc
Q 014776 82 VSGVQPTGSIHLGNYLGAI--KNWIALQNS--YETL--FFIVDL 119 (419)
Q Consensus 82 ~tGi~PTG~lHLGnylg~i--k~~~~lQ~~--~~~~--i~IaDl 119 (419)
|+|--|+|.+|+||.-+++ .-+.++.+. ++|+ .-|.||
T Consensus 149 ~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 149 FSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDW 192 (607)
T ss_dssp CCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCC
T ss_pred ecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCc
Confidence 6899999999999987765 334555553 6664 457884
No 92
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=41.69 E-value=17 Score=37.26 Aligned_cols=73 Identities=27% Similarity=0.262 Sum_probs=39.9
Q ss_pred hhhhhhHHHHHhhhhc------cccee--cccCchHHHHHHHHHHHHHHhhhhCCccccccCCCCCccccCCc--eecCC
Q 014776 200 ALLTYPVLMASDILLY------QSDFV--PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE--PLIPP 269 (419)
Q Consensus 200 g~l~YPvLQaADil~~------~adiv--pvG~DQ~~h~eLaRdia~r~n~~~g~~~~~k~g~~~~~~f~~P~--~l~~~ 269 (419)
|..+| .+.||-+. ..|.+ .+|.||..|+.--..+++.++ +..|. .+..
T Consensus 215 G~~~Y---~t~DiA~~~~r~~~~~d~~Iyv~G~dq~~~f~~l~~~l~~lG------------------~~~~~~~h~~~- 272 (464)
T 3fnr_A 215 GRGTY---LAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFLG------------------FDSNNLEIILA- 272 (464)
T ss_dssp SCBCH---HHHHHHHHHHHHTSSCSEEEEEEEGGGGGGHHHHHHHHHTTT------------------CCGGGEEEEEE-
T ss_pred Cceeh---hhHHHHHHHHHHHcCCCeEEEEecCcHHHHHHHHHHHHHHcC------------------CCccceEEEEe-
Confidence 44455 45555442 35644 699999999987777766544 22222 1221
Q ss_pred CCcccccCCCCC-CccccCCCCCCCceecCC
Q 014776 270 AGARVMSLTDGL-SKMSKSAPSDQSRINLLD 299 (419)
Q Consensus 270 ~~~~l~sL~dg~-~KMSKS~p~~~s~I~L~D 299 (419)
.+|.-..||+ .|||||. ++.|.+.|
T Consensus 273 --g~V~l~~dG~~~KMSKr~---Gn~v~l~d 298 (464)
T 3fnr_A 273 --QMVSLLKDGEPYKMSKRA---GNFILMSD 298 (464)
T ss_dssp --CCEEEEETTEECCC---C---CSSCBHHH
T ss_pred --eeEEecCCCcccCCcCcC---CCCCCHHH
Confidence 1331113564 5999997 68887755
No 93
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=39.67 E-value=10 Score=42.41 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=24.3
Q ss_pred CceEEEec-CCCCcchhhhHHHHHHH--HHHHhhc--ccEEE
Q 014776 78 KKRIVSGV-QPTGSIHLGNYLGAIKN--WIALQNS--YETLF 114 (419)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGnylg~ik~--~~~lQ~~--~~~~i 114 (419)
++.++.|. -|||.+|+||.+..+.+ +.+++.. ++|.+
T Consensus 35 kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~ 76 (967)
T 1wz2_A 35 KFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLF 76 (967)
T ss_dssp CCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBC
T ss_pred cEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCC
Confidence 56777776 35799999999875522 4455554 56543
No 94
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=36.48 E-value=62 Score=30.47 Aligned_cols=84 Identities=14% Similarity=0.158 Sum_probs=60.9
Q ss_pred CCceEEEecCCCCcchhhhHHHHHHHHHHHhhcc-cEEEEEeCcceecC----CCCHHHHHHHH--------HHHHHHHH
Q 014776 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITL----PYDTQQLSKAT--------RETAAIYL 143 (419)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGnylg~ik~~~~lQ~~~-~~~i~IaDlhA~t~----~~~~~~i~~~~--------~~~~a~~l 143 (419)
++..++.||-|=-.-|=+.++-.+-.|. +..+ +|-|+++|.+.--+ ..++.+-++.+ +.+...|.
T Consensus 28 ~g~HallGVSpgNsyFs~drl~~li~Wa--~~~F~~vdVli~D~~~~~tl~A~G~~~~~A~rKarr~~~~~r~~i~ral~ 105 (247)
T 3oqv_A 28 RGEHALIGISAGNSYFSQKNTVMLLQWA--GQRFERTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLRRSLE 105 (247)
T ss_dssp CEEEEEEEEESSCTTCCHHHHHHHHHHH--HHHEEEEEEEEECSSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCcccCHHHHHHHHHHH--HccCCceEEEeCChHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999998899999998888894 6665 68999999954322 33443333222 34556777
Q ss_pred HcCcCCCceEEEEcCCcch
Q 014776 144 ACGIDNSKASVFVQSHVRA 162 (419)
Q Consensus 144 A~GlDp~k~~if~qS~v~~ 162 (419)
++|.+.++..+..=||+..
T Consensus 106 ~~~~~~~~~rv~~~Sd~~~ 124 (247)
T 3oqv_A 106 SVGDHAERFRVRSLSELQE 124 (247)
T ss_dssp HHCTTGGGEEEEEHHHHTT
T ss_pred HhCCCccCceeeeHHHhhC
Confidence 8899999888888788743
No 95
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0
Probab=25.54 E-value=59 Score=31.23 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=24.6
Q ss_pred cccceecccCchHHHHHHHHHHHHHHh
Q 014776 215 YQSDFVPVGEDQKQHLELTRELAERVN 241 (419)
Q Consensus 215 ~~adivpvG~DQ~~h~eLaRdia~r~n 241 (419)
.++|....|..-.|-+.+-|.+.+.+|
T Consensus 140 v~Pd~A~FG~Kd~qql~~ir~mv~dl~ 166 (283)
T 3uk2_A 140 VQPRVAVFGKKDYQQLMIVRRMCQQLA 166 (283)
T ss_dssp HCCSEEEEETTSHHHHHHHHHHHHHTT
T ss_pred cCCCeeEeCCchhhhHHHHHHHHHHcC
Confidence 379999999999999999999999876
No 96
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=25.33 E-value=26 Score=37.17 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=20.8
Q ss_pred ccceec--ccCchHHHHHHHHHHHHHHh
Q 014776 216 QSDFVP--VGEDQKQHLELTRELAERVN 241 (419)
Q Consensus 216 ~adivp--vG~DQ~~h~eLaRdia~r~n 241 (419)
+.|.+. +|.||..|+.-...+++.++
T Consensus 363 ~~d~~IyV~g~~q~~~f~q~~~~~~~lG 390 (607)
T 1f7u_A 363 HFDKMIYVIASQQDLHAAQFFEILKQMG 390 (607)
T ss_dssp CCSEEEEECCGGGHHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEcChHhhHHHHHHHHHHHcC
Confidence 456665 99999999988888887754
No 97
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=22.12 E-value=33 Score=36.02 Aligned_cols=34 Identities=9% Similarity=-0.089 Sum_probs=23.1
Q ss_pred hhhHHHHHhhhhcccceecccCchHHHHHHHHHH
Q 014776 203 TYPVLMASDILLYQSDFVPVGEDQKQHLELTREL 236 (419)
Q Consensus 203 ~YPvLQaADil~~~adivpvG~DQ~~h~eLaRdi 236 (419)
+|=+==+.|....+.|+|..|.|...|-.+-.-|
T Consensus 210 tY~la~vvDDh~~GITHviRg~e~~~n~~~q~~l 243 (553)
T 1qtq_A 210 MYDFTHCISDALEGITHSLCTLEFQDNRRLYDWV 243 (553)
T ss_dssp CHHHHHHHHHHHTTCSEEEEEGGGTTTHHHHHHH
T ss_pred ccccccEEEeccCCcceEeeccchhhhHHHHHHH
Confidence 3333345666778999999999997765443333
No 98
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=21.16 E-value=1.1e+02 Score=21.05 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 014776 387 YLDKVLADGAAKAADIADATLNNVYQAMGF 416 (419)
Q Consensus 387 ~l~~iL~~GaekAr~iA~~tl~~Vr~a~Gl 416 (419)
.++.-|++=..+-.+|.++||.+--+.+|+
T Consensus 7 everklkefvrrhqeitqetlheyaqklgl 36 (52)
T 1y66_A 7 EVERKLKEFVRRHQEITQETLHEYAQKLGL 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 455556666666667777777777766665
Done!