Citrus Sinensis ID: 014778

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
Protein Sequence
MGKLERVVWAFLVSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAAPAIALAYWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccccccEEEccccccEEEEEccccccEEcccHHHHccccccccccccccccccccHHHHccccccEEEcccccccccccHHHHccccccccccccccccccccHHccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHcccccccEEEEcccccEEEEEcccccEEEEEEEcccccccccHHHHHHHHHHHHccccccccEEEEEccccccEEEccccccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccEEEEEcccccEEEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEccEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccccccccccccEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHEEccccccccEEEcccccEccHHHHHHHHcccccccEEEcccccEEEEEEcccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEcccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEc
Coil and Loop (DISEMBL)
MGKLERVVWAFLVSILFFDLLLRVASNAEGDALNALKtnladpnnvlqswdatlvnpctwfhvtcnsensvtrvdlgnanlsGQLVSQLGQLTNLQYLELYSnnisgkvpeelgnltnlvsLDLYlnnlngpipttlgklSKLRFLRLNNnslmgeiprsltnvnslqvldlsnnkltgdiptngsfslftpisfannqlnnpppspppplqptppgassgnsatgAIAGGVAAGAALLFAAPAIALAYWrkrkpedhffdvpaeedpevhlgqlkrFSLRELQVATdnfsnrnilgrggfgkvykgrltdgSLVAVKRLKEertqggelqfqTEVEMISMAVHRNLLRlrgfcmtpterllvypfmvngsvASCLRGMfivsgfpsffSYLFFIAFVQSLIQSLHFAKYSCVSILLFC
Flexible Loop (DISEMBL)
MGKLERVVWAFLVSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAAPAIALAYWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVAtdnfsnrnilgrggfgkvykgrltDGSLVAVKRLkeertqggelqfqteVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC
Low Complexity Region (SEG)
MGKLERVVWAFLVSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANlsgqlvsqlgqlTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFAnnqlnnpppspppplqptppGASSGNSatgaiaggvaagaallfaapaialaYWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC
Disordered region (IsUnstruct)
****ERVVWAFLVSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISF*******************************AIAGGVAAGAALLFAAPAIALAYWRKRKPEDHFFDVPAE**PEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEE*TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLF*
Disordered Region (DISOPRED)
*****RV**AFLVSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPP************************AGGVAAGAALLFAAPAIALAYW*********************LGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFI*S*FPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC
Disordered Region (DISEMBL)
MGKLERVVWAFLVSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNP*******************SATGAIAGGVAAGAALLFAAPAIALAYWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC
Disordered Region (DISPRO)
*GKLERVVWAFLVSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPPPPLQPT*******NSATGAIAGGVAAGAALLFAAPAIALAYWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKLERVVWAFLVSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAAPAIALAYWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	419	2.2.26 [Sep-21-2011]
Q94F62	615	BRASSINOSTEROID INSENSITI	yes	no	0.878	0.598	0.842	1e-164
Q9SKG5	620	Somatic embryogenesis rec	no	no	0.842	0.569	0.798	1e-151
Q9XIC7	628	Somatic embryogenesis rec	no	no	0.842	0.562	0.791	1e-145
Q94AG2	625	Somatic embryogenesis rec	no	no	0.885	0.593	0.757	1e-143
Q8LPS5	601	Somatic embryogenesis rec	no	no	0.840	0.585	0.660	1e-126
Q9LFS4	638	Protein NSP-INTERACTING K	no	no	0.825	0.542	0.486	5e-82
Q8RY65	635	Protein NSP-INTERACTING K	no	no	0.828	0.546	0.464	1e-79
C0LGT1	613	Probable LRR receptor-lik	no	no	0.885	0.605	0.490	4e-79
C0LGX1	607	Probable LRR receptor-lik	no	no	0.863	0.596	0.473	3e-75
Q93ZS4	632	Protein NSP-INTERACTING K	no	no	0.880	0.583	0.455	1e-73

>sp|Q94F62|BAK1_ARATH BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2

 Score =  578 bits (1490), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 310/368 (84%), Positives = 333/368 (90%)

Query: 10  AFLVSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSEN 69
            F   IL  DL+LRV+ NAEGDAL+ALK +LADPN VLQSWDATLV PCTWFHVTCNS+N
Sbjct: 9   CFFWLILVLDLVLRVSGNAEGDALSALKNSLADPNKVLQSWDATLVTPCTWFHVTCNSDN 68

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           SVTRVDLGNANLSGQLV QLGQL NLQYLELYSNNI+G +PE+LGNLT LVSLDLYLNNL
Sbjct: 69  SVTRVDLGNANLSGQLVMQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNL 128

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSL 189
           +GPIP+TLG+L KLRFLRLNNNSL GEIPRSLT V +LQVLDLSNN LTGDIP NGSFSL
Sbjct: 129 SGPIPSTLGRLKKLRFLRLNNNSLSGEIPRSLTAVLTLQVLDLSNNPLTGDIPVNGSFSL 188

Query: 190 FTPISFANNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAAPAIALAY 249
           FTPISFAN +L   P SPPPP+ PTPP  +  N  TGAIAGGVAAGAALLFA PAIALA+
Sbjct: 189 FTPISFANTKLTPLPASPPPPISPTPPSPAGSNRITGAIAGGVAAGAALLFAVPAIALAW 248

Query: 250 WRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRL 309
           WR++KP+DHFFDVPAEEDPEVHLGQLKRFSLRELQVA+DNFSN+NILGRGGFGKVYKGRL
Sbjct: 249 WRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRL 308

Query: 310 TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVN 369
            DG+LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP+M N
Sbjct: 309 ADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMAN 368

Query: 370 GSVASCLR 377
           GSVASCLR
Sbjct: 369 GSVASCLR 376

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Controls the expression of genes associated with innate immunity in the absence of pathogens or elicitors. Involved in brassinosteroid (BR) signal transduction. Phosphorylates BRI1. May be involved in changing the equilibrium between plasma membrane-located BRI1 homodimers and endocytosed BRI1-BAK1 heterodimers. Interaction with MSBP1 stimulates the endocytosis of BAK1 and suppresses brassinosteroid signaling. Acts in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) via its interaction with FLS2 and the phosphorylation of BIK1. Involved in programmed cell death (PCD) control. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9SKG5|SERK4_ARATH Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2

 Score =  535 bits (1378), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 286/358 (79%), Positives = 314/358 (87%), Gaps = 5/358 (1%)

Query: 23  RVASNAEGDALNALKTNLA--DP-NNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNA 79
           RVA NAEGDAL  LK +L+  DP NNVLQSWDATLV PCTWFHVTCN EN VTRVDLGNA
Sbjct: 26  RVAGNAEGDALTQLKNSLSSGDPANNVLQSWDATLVTPCTWFHVTCNPENKVTRVDLGNA 85

Query: 80  NLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGK 139
            LSG+LV +LGQL NLQYLELYSNNI+G++PEELG+L  LVSLDLY N+++GPIP++LGK
Sbjct: 86  KLSGKLVPELGQLLNLQYLELYSNNITGEIPEELGDLVELVSLDLYANSISGPIPSSLGK 145

Query: 140 LSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQ 199
           L KLRFLRLNNNSL GEIP +LT+V  LQVLD+SNN+L+GDIP NGSFSLFTPISFANN 
Sbjct: 146 LGKLRFLRLNNNSLSGEIPMTLTSVQ-LQVLDISNNRLSGDIPVNGSFSLFTPISFANNS 204

Query: 200 LNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAAPAIALAYWRKRKPEDHF 259
           L + P  PP    PTPP   SG   T AIAGGVAAGAALLFA PAIA A+W +RKP+DHF
Sbjct: 205 LTDLPEPPPTSTSPTPP-PPSGGQMTAAIAGGVAAGAALLFAVPAIAFAWWLRRKPQDHF 263

Query: 260 FDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKR 319
           FDVPAEEDPEVHLGQLKRF+LREL VATDNFSN+N+LGRGGFGKVYKGRL DG+LVAVKR
Sbjct: 264 FDVPAEEDPEVHLGQLKRFTLRELLVATDNFSNKNVLGRGGFGKVYKGRLADGNLVAVKR 323

Query: 320 LKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           LKEERT+GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP+M NGSVASCLR
Sbjct: 324 LKEERTKGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLR 381

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Positively regulates the BR-dependent plant growth pathway and negatively regulates the BR-independent cell-death pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9XIC7|SERK2_ARATH Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1

 Score =  514 bits (1323), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 289/365 (79%), Positives = 314/365 (86%), Gaps = 12/365 (3%)

Query: 25  ASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANLSGQ 84
           +SN EGDAL++L+ NL DPNNVLQSWD TLVNPCTWFHVTCN+ENSV RVDLGNA+LSGQ
Sbjct: 28  SSNMEGDALHSLRANLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNADLSGQ 87

Query: 85  LVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLR 144
           LV QLGQL NLQYLELYSNNI+G VP +LGNLTNLVSLDLYLN+  GPIP +LGKL KLR
Sbjct: 88  LVPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSLDLYLNSFTGPIPDSLGKLFKLR 147

Query: 145 FLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANN-QLNNP 203
           FLRLNNNSL G IP SLTN+ +LQVLDLSNN+L+G +P NGSFSLFTPISFANN  L  P
Sbjct: 148 FLRLNNNSLTGPIPMSLTNIMTLQVLDLSNNRLSGSVPDNGSFSLFTPISFANNLDLCGP 207

Query: 204 PPS-----------PPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAAPAIALAYWRK 252
             S           PPP + P       G SATGAIAGGVAAGAALLFAAPA+A A+WR+
Sbjct: 208 VTSRPCPGSPPFSPPPPFIPPPIVPTPGGYSATGAIAGGVAAGAALLFAAPALAFAWWRR 267

Query: 253 RKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDG 312
           RKP++ FFDVPAEEDPEVHLGQLKRFSLRELQVATD+FSN+NILGRGGFGKVYKGRL DG
Sbjct: 268 RKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADG 327

Query: 313 SLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSV 372
           +LVAVKRLKEERT GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP+M NGSV
Sbjct: 328 TLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSV 387

Query: 373 ASCLR 377
           ASCLR
Sbjct: 388 ASCLR 392

Serine/threonine-kinase involved in brassinosteroid-dependent and -independent signaling pathways. Acts redundantly with SERK1 as a control point for sporophytic development controlling male gametophyte production.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q94AG2|SERK1_ARATH Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2

 Score =  508 bits (1308), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 291/384 (75%), Positives = 314/384 (81%), Gaps = 13/384 (3%)

Query: 7   VVWAFLVSILFFDLLLRVAS-NAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTC 65
           VV+  L  IL  +  L +AS N EGDAL+ L+  L DPNNVLQSWD TLVNPCTWFHVTC
Sbjct: 6   VVFILLSLILLPNHSLWLASANLEGDALHTLRVTLVDPNNVLQSWDPTLVNPCTWFHVTC 65

Query: 66  NSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLY 125
           N+ENSV RVDLGNA LSG LV +LG L NLQYLELYSNNI+G +P  LGNLTNLVSLDLY
Sbjct: 66  NNENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLY 125

Query: 126 LNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNG 185
           LN+ +GPIP +LGKLSKLRFLRLNNNSL G IP SLTN+ +LQVLDLSNN+L+G +P NG
Sbjct: 126 LNSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPMSLTNITTLQVLDLSNNRLSGSVPDNG 185

Query: 186 SFSLFTPISFANN-QLNNPPPSPPPPLQPTPP-----------GASSGNSATGAIAGGVA 233
           SFSLFTPISFANN  L  P  S P P  P                 SG   TGAIAGGVA
Sbjct: 186 SFSLFTPISFANNLDLCGPVTSHPCPGSPPFSPPPPFIQPPPVSTPSGYGITGAIAGGVA 245

Query: 234 AGAALLFAAPAIALAYWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNR 293
           AGAALLFAAPAIA A+WR+RKP D FFDVPAEEDPEVHLGQLKRFSLRELQVA+D FSN+
Sbjct: 246 AGAALLFAAPAIAFAWWRRRKPLDIFFDVPAEEDPEVHLGQLKRFSLRELQVASDGFSNK 305

Query: 294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 353
           NILGRGGFGKVYKGRL DG+LVAVKRLKEERT GGELQFQTEVEMISMAVHRNLLRLRGF
Sbjct: 306 NILGRGGFGKVYKGRLADGTLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGF 365

Query: 354 CMTPTERLLVYPFMVNGSVASCLR 377
           CMTPTERLLVYP+M NGSVASCLR
Sbjct: 366 CMTPTERLLVYPYMANGSVASCLR 389

Dual specificity kinase acting on both serine/threonine-and tyrosine-containing substrates. Phosphorylates BRI1 on 'Ser-887' and CDC48 on at least one threonine residue and on 'Ser-41'. Confers embryogenic competence. Acts redundantly with SERK2 as a control point for sporophytic development controlling male gametophyte production. Involved in the brassinolide signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8LPS5|SERK5_ARATH Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2

 Score =  453 bits (1166), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/371 (66%), Positives = 289/371 (77%), Gaps = 19/371 (5%)

Query: 10  AFLVSILFFDLLLRVASNAEGDALNALKTNLAD---PNNVLQSWDATLVNPCTWFHVTCN 66
            F+  ILF D + RV    + DAL AL+++L+     NN+LQSW+AT V PC+WFHVTCN
Sbjct: 8   GFIWLILFLDFVSRVTGKTQVDALIALRSSLSSGDHTNNILQSWNATHVTPCSWFHVTCN 67

Query: 67  SENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYL 126
           +ENSVTR+DLG+ANLSG+LV QL QL NLQYLEL++NNI+G++PEELG+L  LVSLDL+ 
Sbjct: 68  TENSVTRLDLGSANLSGELVPQLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFA 127

Query: 127 NNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGS 186
           NN++GPIP++LGKL KLRFLRL NNSL GEIPRSLT +  L VLD+SNN+L+GDIP NGS
Sbjct: 128 NNISGPIPSSLGKLGKLRFLRLYNNSLSGEIPRSLTAL-PLDVLDISNNRLSGDIPVNGS 186

Query: 187 FSLFTPISFANNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAAPAIA 246
           FS FT +SFANN+L                 + S +  + AI  GVAAGAALLFA     
Sbjct: 187 FSQFTSMSFANNKLR----------PRPASPSPSPSGTSAAIVVGVAAGAALLFALAWWL 236

Query: 247 LAYWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYK 306
                +RK + HF DVPAEEDPEV+LGQ KRFSLREL VAT+ FS RN+LG+G FG +YK
Sbjct: 237 -----RRKLQGHFLDVPAEEDPEVYLGQFKRFSLRELLVATEKFSKRNVLGKGRFGILYK 291

Query: 307 GRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF 366
           GRL D +LVAVKRL EERT+GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP+
Sbjct: 292 GRLADDTLVAVKRLNEERTKGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPY 351

Query: 367 MVNGSVASCLR 377
           M NGSVASCLR
Sbjct: 352 MANGSVASCLR 362

Serine/threonine-kinase of unknown function.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LFS4|NIK1_ARATH Protein NSP-INTERACTING KINASE 1 OS=Arabidopsis thaliana GN=NIK1 PE=1 SV=1

 Score =  305 bits (780), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 178/366 (48%), Positives = 232/366 (63%), Gaps = 20/366 (5%)

Query: 27  NAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANLSGQLV 86
           N E  AL  +K +L DP+ VL +WD   V+PC+W  VTC+SEN V  +   + NLSG L 
Sbjct: 39  NFEVQALMDIKASLHDPHGVLDNWDRDAVDPCSWTMVTCSSENFVIGLGTPSQNLSGTLS 98

Query: 87  SQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFL 146
             +  LTNL+ + L +NNI GK+P E+G LT L +LDL  N  +G IP ++G L  L++L
Sbjct: 99  PSITNLTNLRIVLLQNNNIKGKIPAEIGRLTRLETLDLSDNFFHGEIPFSVGYLQSLQYL 158

Query: 147 RLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPS 206
           RLNNNSL G  P SL+N+  L  LDLS N L+G +P    F+  T  S   N L  P  +
Sbjct: 159 RLNNNSLSGVFPLSLSNMTQLAFLDLSYNNLSGPVP---RFAAKT-FSIVGNPLICPTGT 214

Query: 207 PPP----PLQP---------TPPGASSGNSATGAIAGGVAAGA-ALLFAAPAIALAYWRK 252
            P      L P          P  A    +   AIA G + G  +L+F A  + L +WR+
Sbjct: 215 EPDCNGTTLIPMSMNLNQTGVPLYAGGSRNHKMAIAVGSSVGTVSLIFIAVGLFL-WWRQ 273

Query: 253 RKPEDHFFDVP-AEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTD 311
           R  ++ FFDV       EV LG L+RF  RELQ+AT+NFS++N+LG+GG+G VYKG L D
Sbjct: 274 RHNQNTFFDVKDGNHHEEVSLGNLRRFGFRELQIATNNFSSKNLLGKGGYGNVYKGILGD 333

Query: 312 GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGS 371
            ++VAVKRLK+    GGE+QFQTEVEMIS+AVHRNLLRL GFC+T TE+LLVYP+M NGS
Sbjct: 334 STVVAVKRLKDGGALGGEIQFQTEVEMISLAVHRNLLRLYGFCITQTEKLLVYPYMSNGS 393

Query: 372 VASCLR 377
           VAS ++
Sbjct: 394 VASRMK 399

Involved in defense response to geminivirus infection via regulation of the nuclear trafficking of RPL10A. Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8RY65|NIK2_ARATH Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1

 Score =  297 bits (760), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 170/366 (46%), Positives = 226/366 (61%), Gaps = 19/366 (5%)

Query: 27  NAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANLSGQLV 86
           N E  AL  +K++L DP+ VL +WD T V+PC+W  +TC S+  V R++  + NLSG L 
Sbjct: 40  NFEVVALIGIKSSLTDPHGVLMNWDDTAVDPCSWNMITC-SDGFVIRLEAPSQNLSGTLS 98

Query: 87  SQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFL 146
           S +G LTNLQ + L +N I+G +P E+G L  L +LDL  NN  G IP TL     L++L
Sbjct: 99  SSIGNLTNLQTVLLQNNYITGNIPHEIGKLMKLKTLDLSTNNFTGQIPFTLSYSKNLQYL 158

Query: 147 RLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPS 206
           R+NNNSL G IP SL N+  L  LDLS N L+G +P     SL    +   N    P  +
Sbjct: 159 RVNNNSLTGTIPSSLANMTQLTFLDLSYNNLSGPVPR----SLAKTFNVMGNSQICPTGT 214

Query: 207 P-------PPPLQPTPPGASSGNSATG------AIAGGVAAGAALLFAAPAIALAYWRKR 253
                   P P+  T   + + +S  G      A+  GV+     L       L +WR+R
Sbjct: 215 EKDCNGTQPKPMSITLNSSQNKSSDGGTKNRKIAVVFGVSLTCVCLLIIGFGFLLWWRRR 274

Query: 254 KPEDH-FFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDG 312
             +   FFD+  +   E+ LG L+RF+ +ELQ AT NFS++N++G+GGFG VYKG L DG
Sbjct: 275 HNKQVLFFDINEQNKEEMCLGNLRRFNFKELQSATSNFSSKNLVGKGGFGNVYKGCLHDG 334

Query: 313 SLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSV 372
           S++AVKRLK+    GGE+QFQTE+EMIS+AVHRNLLRL GFC T +ERLLVYP+M NGSV
Sbjct: 335 SIIAVKRLKDINNGGGEVQFQTELEMISLAVHRNLLRLYGFCTTSSERLLVYPYMSNGSV 394

Query: 373 ASCLRG 378
           AS L+ 
Sbjct: 395 ASRLKA 400

Involved in defense response to geminivirus infection (By similarity). Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGT1|Y5129_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Arabidopsis thaliana GN=At5g10290 PE=1 SV=1

 Score =  295 bits (755), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 187/381 (49%), Positives = 234/381 (61%), Gaps = 10/381 (2%)

Query: 1   MGKLERVVWAFLVSILFFDLLLR-VASNAEGDALNALKTNLADPNNVLQSWDATLVNPCT 59
           M  L+++  AF  ++LFF  L   V+ +A+GDAL AL+ +L    N L  W+   VNPCT
Sbjct: 3   MFSLQKMAMAF--TLLFFACLCSFVSPDAQGDALFALRISLRALPNQLSDWNQNQVNPCT 60

Query: 60  WFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNL 119
           W  V C+ +N VT + L + N SG L S++G L NL+ L L  N I+G++PE+ GNLT+L
Sbjct: 61  WSQVICDDKNFVTSLTLSDMNFSGTLSSRVGILENLKTLTLKGNGITGEIPEDFGNLTSL 120

Query: 120 VSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTG 179
            SLDL  N L G IP+T+G L KL+FL L+ N L G IP SLT + +L  L L +N L+G
Sbjct: 121 TSLDLEDNQLTGRIPSTIGNLKKLQFLTLSRNKLNGTIPESLTGLPNLLNLLLDSNSLSG 180

Query: 180 DIPTNGSFSLFT--PISFANNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAA 237
            IP     SLF     +F +N LN     P P +        S    TG IAG VA    
Sbjct: 181 QIPQ----SLFEIPKYNFTSNNLNCGGRQPHPCVSAVAHSGDSSKPKTGIIAGVVAGVTV 236

Query: 238 LLFAAPAIALAYWR-KRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNIL 296
           +LF          R K    D F DV  E D  +  GQLKRF+ RELQ+ATDNFS +N+L
Sbjct: 237 VLFGILLFLFCKDRHKGYRRDVFVDVAGEVDRRIAFGQLKRFAWRELQLATDNFSEKNVL 296

Query: 297 GRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT 356
           G+GGFGKVYKG L D + VAVKRL +  + GG+  FQ EVEMIS+AVHRNLLRL GFC T
Sbjct: 297 GQGGFGKVYKGVLPDNTKVAVKRLTDFESPGGDAAFQREVEMISVAVHRNLLRLIGFCTT 356

Query: 357 PTERLLVYPFMVNGSVASCLR 377
            TERLLVYPFM N S+A  LR
Sbjct: 357 QTERLLVYPFMQNLSLAHRLR 377

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGX1|Y5524_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g65240 OS=Arabidopsis thaliana GN=At5g65240 PE=2 SV=1

 Score =  282 bits (722), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 176/372 (47%), Positives = 227/372 (61%), Gaps = 10/372 (2%)

Query: 11  FLVSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENS 70
            + +++F  L   V+ +A+GDAL AL+++L      L  W+   V+PCTW  V C+ +  
Sbjct: 5   IITALVFSSLWSSVSPDAQGDALFALRSSLRASPEQLSDWNQNQVDPCTWSQVICDDKKH 64

Query: 71  VTRVDLGNANLS-GQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           VT V L   N S G L S +G LT L+ L L  N I G +PE +GNL++L SLDL  N+L
Sbjct: 65  VTSVTLSYMNFSSGTLSSGIGILTTLKTLTLKGNGIMGGIPESIGNLSSLTSLDLEDNHL 124

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSL 189
              IP+TLG L  L+FL L+ N+L G IP SLT ++ L  + L +N L+G+IP     SL
Sbjct: 125 TDRIPSTLGNLKNLQFLTLSRNNLNGSIPDSLTGLSKLINILLDSNNLSGEIPQ----SL 180

Query: 190 FT--PISFANNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAAPAIAL 247
           F     +F  N L+     P P +  + P   S +  TG IAG V +G A++        
Sbjct: 181 FKIPKYNFTANNLSCGGTFPQPCVTESSPSGDSSSRKTGIIAG-VVSGIAVILLGFFFFF 239

Query: 248 AYWRKRK--PEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVY 305
               K K    D F DV  E D  +  GQL+RF+ RELQ+ATD FS +N+LG+GGFGKVY
Sbjct: 240 FCKDKHKGYKRDVFVDVAGEVDRRIAFGQLRRFAWRELQLATDEFSEKNVLGQGGFGKVY 299

Query: 306 KGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP 365
           KG L+DG+ VAVKRL +    GG+  FQ EVEMIS+AVHRNLLRL GFC T TERLLVYP
Sbjct: 300 KGLLSDGTKVAVKRLTDFERPGGDEAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYP 359

Query: 366 FMVNGSVASCLR 377
           FM N SVA CLR
Sbjct: 360 FMQNLSVAYCLR 371

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q93ZS4|NIK3_ARATH Protein NSP-INTERACTING KINASE 3 OS=Arabidopsis thaliana GN=NIK3 PE=1 SV=1

 Score =  277 bits (709), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 175/384 (45%), Positives = 234/384 (60%), Gaps = 15/384 (3%)

Query: 7   VVW--AFLVSILFFDL----LLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTW 60
           VVW   FLV + FFD+    L     N E  AL A+K  L DP  VL++WD   V+PC+W
Sbjct: 7   VVWRLGFLVFVWFFDISSATLSPTGVNYEVTALVAVKNELNDPYKVLENWDVNSVDPCSW 66

Query: 61  FHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLV 120
             V+C ++  V+ +DL + +LSG L  ++G LT LQ + L +N I+G +PE +G L  L 
Sbjct: 67  RMVSC-TDGYVSSLDLPSQSLSGTLSPRIGNLTYLQSVVLQNNAITGPIPETIGRLEKLQ 125

Query: 121 SLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGD 180
           SLDL  N+  G IP +LG+L  L +LRLNNNSL+G  P SL+ +  L ++D+S N L+G 
Sbjct: 126 SLDLSNNSFTGEIPASLGELKNLNYLRLNNNSLIGTCPESLSKIEGLTLVDISYNNLSGS 185

Query: 181 IPTNGSFSLFTPISFA----NNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGA 236
           +P   S   F  I  A       ++N    P P   P      SG    G       A +
Sbjct: 186 LP-KVSARTFKVIGNALICGPKAVSNCSAVPEPLTLPQDGPDESGTRTNGHHVALAFAAS 244

Query: 237 ALLFAAPAIA---LAYWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNR 293
                          +WR R+ +  FFDV  + DPEV LG LKR++ +EL+ AT++F+++
Sbjct: 245 FSAAFFVFFTSGMFLWWRYRRNKQIFFDVNEQYDPEVSLGHLKRYTFKELRSATNHFNSK 304

Query: 294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 353
           NILGRGG+G VYKG L DG+LVAVKRLK+    GGE+QFQTEVE IS+A+HRNLLRLRGF
Sbjct: 305 NILGRGGYGIVYKGHLNDGTLVAVKRLKDCNIAGGEVQFQTEVETISLALHRNLLRLRGF 364

Query: 354 CMTPTERLLVYPFMVNGSVASCLR 377
           C +  ER+LVYP+M NGSVAS L+
Sbjct: 365 CSSNQERILVYPYMPNGSVASRLK 388

Involved in defense response to geminivirus infection.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	419
359485981	610	PREDICTED: BRASSINOSTEROID INSENSITIVE 1	0.873	0.6	0.877	1e-165
356510695	621	PREDICTED: BRASSINOSTEROID INSENSITIVE 1	0.899	0.607	0.761	1e-164
18418211	615	BRASSINOSTEROID INSENSITIVE 1-associated	0.878	0.598	0.842	1e-162
14573459	615	somatic embryogenesis receptor-like kina	0.878	0.598	0.842	1e-162
297798596	612	bri1-associated receptor kinase [Arabido	0.875	0.599	0.842	1e-161
333952414	620	somatic embryogenesis receptor-like kina	0.887	0.6	0.857	1e-161
356558614	616	PREDICTED: BRASSINOSTEROID INSENSITIVE 1	0.892	0.607	0.844	1e-161
356558616	620	PREDICTED: BRASSINOSTEROID INSENSITIVE 1	0.892	0.603	0.844	1e-161
397880702	632	leucine-rich repeat receptor-like kinase	0.885	0.587	0.797	1e-160
327422167	620	somatic embryogenesis receptor-like kina	0.890	0.601	0.850	1e-159

>gi|359485981|ref|XP_002262698.2| PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like [Vitis vinifera] gi|296081547|emb|CBI20070.3| unnamed protein product [Vitis vinifera]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 322/367 (87%), Positives = 344/367 (93%), Gaps = 1/367 (0%)

Query: 11  FLVSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENS 70
           F+  I+ F   LRV+ N+EGDALNALK+NLADPNNVLQSWDATLVNPCTWFHVTCNS+NS
Sbjct: 10  FVSLIIVFSAFLRVSGNSEGDALNALKSNLADPNNVLQSWDATLVNPCTWFHVTCNSDNS 69

Query: 71  VTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLN 130
           VTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGK+PEELGNLTNLVSLDLY+N L+
Sbjct: 70  VTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKIPEELGNLTNLVSLDLYMNKLS 129

Query: 131 GPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLF 190
           GPIPTTL KL+KLRFLRLNNN+L G IPRSLT V +LQVLDLSNN+LTGDIP +GSFSLF
Sbjct: 130 GPIPTTLAKLAKLRFLRLNNNTLTGTIPRSLTTVMTLQVLDLSNNQLTGDIPVDGSFSLF 189

Query: 191 TPISFANNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAAPAIALAYW 250
           TPISF NN+LN  P SPPPP+ PT   ASSGNSATGAIAGGVAAGAALLFAAPAI LA+W
Sbjct: 190 TPISFNNNRLNPLPVSPPPPISPTLT-ASSGNSATGAIAGGVAAGAALLFAAPAIVLAWW 248

Query: 251 RKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLT 310
           R+RKP++HFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSN++ILGRGGFGKVYKGRLT
Sbjct: 249 RRRKPQEHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGRGGFGKVYKGRLT 308

Query: 311 DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNG 370
           DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNG
Sbjct: 309 DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNG 368

Query: 371 SVASCLR 377
           SVASCLR
Sbjct: 369 SVASCLR 375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510695|ref|XP_003524071.1| PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like [Glycine max]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 291/382 (76%), Positives = 319/382 (83%), Gaps = 5/382 (1%)

Query: 1   MGKLERVV-----WAFLVSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLV 55
           M  +ERV+     W  L +IL  DLLL+V+ N EGDAL ALK +++DPNNVLQSWD+TLV
Sbjct: 1   MANMERVISDFMSWFPLWAILVLDLLLKVSGNTEGDALTALKNSVSDPNNVLQSWDSTLV 60

Query: 56  NPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGN 115
           +PCTWFHVTCN+ENSVTRVDLGNANLSGQLV QLGQL NLQYLELYSNNI+GK+P+ELG+
Sbjct: 61  DPCTWFHVTCNNENSVTRVDLGNANLSGQLVPQLGQLPNLQYLELYSNNITGKIPDELGS 120

Query: 116 LTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNN 175
           L NLVSLDLY NN+ GPI   L  L KLRFLRLNNNSL G+IP  LT V+SLQVLDLSNN
Sbjct: 121 LRNLVSLDLYSNNITGPISDNLANLKKLRFLRLNNNSLSGKIPVRLTTVDSLQVLDLSNN 180

Query: 176 KLTGDIPTNGSFSLFTPISFANNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAG 235
            LTGDIP NGSFS FTPISF NN   N    PPP + P    + +GN A   IAGGVA G
Sbjct: 181 NLTGDIPINGSFSSFTPISFRNNPSLNNTLVPPPAVTPPQSSSGNGNRAIVIIAGGVAVG 240

Query: 236 AALLFAAPAIALAYWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNI 295
           AALLFAAP I L YW++RKP D FFDV AEEDPEVHLGQLKRFSLRELQVATD F+N+NI
Sbjct: 241 AALLFAAPVIVLVYWKRRKPRDFFFDVAAEEDPEVHLGQLKRFSLRELQVATDTFNNKNI 300

Query: 296 LGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM 355
           LG+GGFGKVYKGRLT+G LVAVKRLKEERTQGGE+QFQTEVEMISMAVHRNLLRLRGFCM
Sbjct: 301 LGKGGFGKVYKGRLTNGDLVAVKRLKEERTQGGEMQFQTEVEMISMAVHRNLLRLRGFCM 360

Query: 356 TPTERLLVYPFMVNGSVASCLR 377
           TPTERLLVYPFM NGSVASCLR
Sbjct: 361 TPTERLLVYPFMSNGSVASCLR 382

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18418211|ref|NP_567920.1| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 [Arabidopsis thaliana] gi|29427920|sp|Q94F62.2|BAK1_ARATH RecName: Full=BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1; Short=AtBAK1; Short=BRI1-associated receptor kinase 1; AltName: Full=Protein ELONGATED; AltName: Full=Somatic embryogenesis receptor kinase 3; Short=AtSERK3; AltName: Full=Somatic embryogenesis receptor-like kinase 3; Flags: Precursor gi|224589645|gb|ACN59355.1| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gi|332660823|gb|AEE86223.1| BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 [Arabidopsis thaliana]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 310/368 (84%), Positives = 333/368 (90%)

Query: 10  AFLVSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSEN 69
            F   IL  DL+LRV+ NAEGDAL+ALK +LADPN VLQSWDATLV PCTWFHVTCNS+N
Sbjct: 9   CFFWLILVLDLVLRVSGNAEGDALSALKNSLADPNKVLQSWDATLVTPCTWFHVTCNSDN 68

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           SVTRVDLGNANLSGQLV QLGQL NLQYLELYSNNI+G +PE+LGNLT LVSLDLYLNNL
Sbjct: 69  SVTRVDLGNANLSGQLVMQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNL 128

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSL 189
           +GPIP+TLG+L KLRFLRLNNNSL GEIPRSLT V +LQVLDLSNN LTGDIP NGSFSL
Sbjct: 129 SGPIPSTLGRLKKLRFLRLNNNSLSGEIPRSLTAVLTLQVLDLSNNPLTGDIPVNGSFSL 188

Query: 190 FTPISFANNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAAPAIALAY 249
           FTPISFAN +L   P SPPPP+ PTPP  +  N  TGAIAGGVAAGAALLFA PAIALA+
Sbjct: 189 FTPISFANTKLTPLPASPPPPISPTPPSPAGSNRITGAIAGGVAAGAALLFAVPAIALAW 248

Query: 250 WRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRL 309
           WR++KP+DHFFDVPAEEDPEVHLGQLKRFSLRELQVA+DNFSN+NILGRGGFGKVYKGRL
Sbjct: 249 WRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRL 308

Query: 310 TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVN 369
            DG+LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP+M N
Sbjct: 309 ADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMAN 368

Query: 370 GSVASCLR 377
           GSVASCLR
Sbjct: 369 GSVASCLR 376

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14573459|gb|AAK68074.1|AF384970_1 somatic embryogenesis receptor-like kinase 3 [Arabidopsis thaliana]

 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 310/368 (84%), Positives = 333/368 (90%)

Query: 10  AFLVSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSEN 69
            F   IL  DL+LRV+ NAEGDAL+ALK +LADPN VLQSWDATLV PCTWFHVTCNS+N
Sbjct: 9   CFFGLILVLDLVLRVSGNAEGDALSALKNSLADPNKVLQSWDATLVTPCTWFHVTCNSDN 68

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           SVTRVDLGNANLSGQLV QLGQL NLQYLELYSNNI+G +PE+LGNLT LVSLDLYLNNL
Sbjct: 69  SVTRVDLGNANLSGQLVMQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNL 128

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSL 189
           +GPIP+TLG+L KLRFLRLNNNSL GEIPRSLT V +LQVLDLSNN LTGDIP NGSFSL
Sbjct: 129 SGPIPSTLGRLKKLRFLRLNNNSLSGEIPRSLTAVLTLQVLDLSNNPLTGDIPVNGSFSL 188

Query: 190 FTPISFANNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAAPAIALAY 249
           FTPISFAN +L   P SPPPP+ PTPP  +  N  TGAIAGGVAAGAALLFA PAIALA+
Sbjct: 189 FTPISFANTKLTPLPASPPPPISPTPPSPAGSNRITGAIAGGVAAGAALLFAVPAIALAW 248

Query: 250 WRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRL 309
           WR++KP+DHFFDVPAEEDPEVHLGQLKRFSLRELQVA+DNFSN+NILGRGGFGKVYKGRL
Sbjct: 249 WRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRL 308

Query: 310 TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVN 369
            DG+LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP+M N
Sbjct: 309 ADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMAN 368

Query: 370 GSVASCLR 377
           GSVASCLR
Sbjct: 369 GSVASCLR 376

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798596|ref|XP_002867182.1| bri1-associated receptor kinase [Arabidopsis lyrata subsp. lyrata] gi|297313018|gb|EFH43441.1| bri1-associated receptor kinase [Arabidopsis lyrata subsp. lyrata]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 311/369 (84%), Positives = 333/369 (90%), Gaps = 2/369 (0%)

Query: 11  FLVSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENS 70
           F   IL  DL+LRV+ NAEGDAL+ALK +LADPN VLQSWDATLV PCTWFHVTCNS+NS
Sbjct: 5   FFWLILVLDLVLRVSGNAEGDALSALKNSLADPNKVLQSWDATLVTPCTWFHVTCNSDNS 64

Query: 71  VTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLN 130
           VTRVDLGNANLSGQLV QLGQL NLQYLELYSNNI+G +PE+LGNLT LVSLDLYLNNL+
Sbjct: 65  VTRVDLGNANLSGQLVMQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNLS 124

Query: 131 GPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLF 190
           GPIP+TLG+L KLRFLRLNNNSL GEIPRSLT V +LQVLDLSNN LTGDIP NGSFSLF
Sbjct: 125 GPIPSTLGRLKKLRFLRLNNNSLSGEIPRSLTAVLTLQVLDLSNNGLTGDIPVNGSFSLF 184

Query: 191 TP--ISFANNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAAPAIALA 248
           TP  ISFAN +L   P SPPPP+ PTPP  +  N  TGAIAGGVAAGAALLFA PAIALA
Sbjct: 185 TPGLISFANTKLTPLPASPPPPISPTPPSPAGSNRITGAIAGGVAAGAALLFAVPAIALA 244

Query: 249 YWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGR 308
           +WR++KP+DHFFDVPAEEDPEVHLGQLKRFSLRELQVA+DNFSNRNILGRGGFGKVYKGR
Sbjct: 245 WWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNRNILGRGGFGKVYKGR 304

Query: 309 LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMV 368
           L DG+LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP+M 
Sbjct: 305 LADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMA 364

Query: 369 NGSVASCLR 377
           NGSVASCLR
Sbjct: 365 NGSVASCLR 373

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|333952414|gb|AEG25668.1| somatic embryogenesis receptor-like kinase 3 protein [Gossypium hirsutum]

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 320/373 (85%), Positives = 337/373 (90%), Gaps = 1/373 (0%)

Query: 5   ERVVWAFLVSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVT 64
           +R++   L  I  FDL  RVA NAEGDALNALKTN+ DPNNVLQSWD TLVNPCTWFHVT
Sbjct: 7   QRLISFCLWLIFVFDLAFRVAGNAEGDALNALKTNMVDPNNVLQSWDPTLVNPCTWFHVT 66

Query: 65  CNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDL 124
           CNSENSVTRVDLGNANL+GQLV QLG L NLQYLELYSNNISG +P+ELGNLT LVSLDL
Sbjct: 67  CNSENSVTRVDLGNANLTGQLVPQLGSLPNLQYLELYSNNISGTIPDELGNLTELVSLDL 126

Query: 125 YLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN 184
           YLN L G IPTTLG+L KLRFLRLNNNSL G IPRSLT +++LQVLDLSNN L GD+P N
Sbjct: 127 YLNKLTGDIPTTLGQLKKLRFLRLNNNSLAGTIPRSLTTIDTLQVLDLSNNGLVGDVPVN 186

Query: 185 GSFSLFTPISFANNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAAPA 244
           GSFSLFTPISFANN+LNNPPP+PPPP+ PTPP A SG S+TGAIAGGVAAGAALLFAAPA
Sbjct: 187 GSFSLFTPISFANNKLNNPPPAPPPPIPPTPP-AQSGISSTGAIAGGVAAGAALLFAAPA 245

Query: 245 IALAYWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKV 304
           I LA WRKRK  DHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSN+NILGRGGFGKV
Sbjct: 246 IVLALWRKRKAPDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKNILGRGGFGKV 305

Query: 305 YKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY 364
           YKGRL DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY
Sbjct: 306 YKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY 365

Query: 365 PFMVNGSVASCLR 377
           PFMVNGSVASCLR
Sbjct: 366 PFMVNGSVASCLR 378

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558614|ref|XP_003547599.1| PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform 1 [Glycine max]

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 320/379 (84%), Positives = 342/379 (90%), Gaps = 5/379 (1%)

Query: 4   LERVVWAFLVS-----ILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPC 58
           +ERV  +F+ S     IL  DL+L+ + N EGDALNALK+NL DPNNVLQSWDATLVNPC
Sbjct: 1   MERVTSSFMGSFFFWAILVLDLVLKASGNQEGDALNALKSNLQDPNNVLQSWDATLVNPC 60

Query: 59  TWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTN 118
           TWFHVTCNS+NSVTRVDLGNA+LSGQLVSQLGQLTNLQYLELYSN I+GK+P+ELGNLTN
Sbjct: 61  TWFHVTCNSDNSVTRVDLGNADLSGQLVSQLGQLTNLQYLELYSNKITGKIPDELGNLTN 120

Query: 119 LVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
           LVSLDLYLN LNGPIPTTLGKL+KLRFLRLNNNSL G IP SLTNV+SLQVLDLSNN L 
Sbjct: 121 LVSLDLYLNTLNGPIPTTLGKLAKLRFLRLNNNSLTGGIPISLTNVSSLQVLDLSNNHLK 180

Query: 179 GDIPTNGSFSLFTPISFANNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAAL 238
           G+IP NGSFSLFTPIS+ NN     P   P P+ PTPP ASSGNS TGAIAGGVAAGAAL
Sbjct: 181 GEIPVNGSFSLFTPISYQNNLGLIQPKYTPSPVSPTPPPASSGNSNTGAIAGGVAAGAAL 240

Query: 239 LFAAPAIALAYWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGR 298
           LFAAPAIALAYWR+RKP+DHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSN++ILGR
Sbjct: 241 LFAAPAIALAYWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGR 300

Query: 299 GGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT 358
           GGFGKVYKGRL DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT
Sbjct: 301 GGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT 360

Query: 359 ERLLVYPFMVNGSVASCLR 377
           ERLLVYP+M NGSVASCLR
Sbjct: 361 ERLLVYPYMANGSVASCLR 379

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558616|ref|XP_003547600.1| PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform 2 [Glycine max]

 Score =  573 bits (1476), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 320/379 (84%), Positives = 342/379 (90%), Gaps = 5/379 (1%)

Query: 4   LERVVWAFLVS-----ILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPC 58
           +ERV  +F+ S     IL  DL+L+ + N EGDALNALK+NL DPNNVLQSWDATLVNPC
Sbjct: 5   MERVTSSFMGSFFFWAILVLDLVLKASGNQEGDALNALKSNLQDPNNVLQSWDATLVNPC 64

Query: 59  TWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTN 118
           TWFHVTCNS+NSVTRVDLGNA+LSGQLVSQLGQLTNLQYLELYSN I+GK+P+ELGNLTN
Sbjct: 65  TWFHVTCNSDNSVTRVDLGNADLSGQLVSQLGQLTNLQYLELYSNKITGKIPDELGNLTN 124

Query: 119 LVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
           LVSLDLYLN LNGPIPTTLGKL+KLRFLRLNNNSL G IP SLTNV+SLQVLDLSNN L 
Sbjct: 125 LVSLDLYLNTLNGPIPTTLGKLAKLRFLRLNNNSLTGGIPISLTNVSSLQVLDLSNNHLK 184

Query: 179 GDIPTNGSFSLFTPISFANNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAAL 238
           G+IP NGSFSLFTPIS+ NN     P   P P+ PTPP ASSGNS TGAIAGGVAAGAAL
Sbjct: 185 GEIPVNGSFSLFTPISYQNNLGLIQPKYTPSPVSPTPPPASSGNSNTGAIAGGVAAGAAL 244

Query: 239 LFAAPAIALAYWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGR 298
           LFAAPAIALAYWR+RKP+DHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSN++ILGR
Sbjct: 245 LFAAPAIALAYWRRRKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKHILGR 304

Query: 299 GGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT 358
           GGFGKVYKGRL DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT
Sbjct: 305 GGFGKVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT 364

Query: 359 ERLLVYPFMVNGSVASCLR 377
           ERLLVYP+M NGSVASCLR
Sbjct: 365 ERLLVYPYMANGSVASCLR 383

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|397880702|gb|AFO67895.1| leucine-rich repeat receptor-like kinase (mitochondrion) [Brassica rapa subsp. campestris]

 Score =  569 bits (1467), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 312/391 (79%), Positives = 335/391 (85%), Gaps = 20/391 (5%)

Query: 3   KLERVVWAFLVSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFH 62
           K+ R  W  LV    FDL+LR + NAEGDAL+ALK +L+DPN VLQSWDATLV PCTWFH
Sbjct: 7   KIARFFWLVLV----FDLVLRTSGNAEGDALSALKNSLSDPNKVLQSWDATLVTPCTWFH 62

Query: 63  VTCNSENSVTRV----------------DLGNANLSGQLVSQLGQLTNLQYLELYSNNIS 106
           VTCNSENSVTRV                DLGNANLSGQLV+QLGQL NLQYLELYSNNI+
Sbjct: 63  VTCNSENSVTRVMVLLFASVTKSLSLLSDLGNANLSGQLVTQLGQLPNLQYLELYSNNIT 122

Query: 107 GKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNS 166
           G +PE+LGNLT LVSLDLYLNNL+GPIP++LG+L KLRFLRLNNNSL GEIPRSLT V S
Sbjct: 123 GPIPEQLGNLTELVSLDLYLNNLSGPIPSSLGRLQKLRFLRLNNNSLSGEIPRSLTAVLS 182

Query: 167 LQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPPPPLQPTPPGASSGNSATG 226
           LQVLDLSN +LTGDIP NGSFSLFTPISFAN  L   P SPPPP+ PTPP  +  N  TG
Sbjct: 183 LQVLDLSNTRLTGDIPVNGSFSLFTPISFANTNLTPLPASPPPPISPTPPSPAGSNRITG 242

Query: 227 AIAGGVAAGAALLFAAPAIALAYWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVA 286
           AIAGGVAAGAALLFA PAIALA WR++KP+DHFFDVPAEEDPEVHLGQLKRFSLRELQVA
Sbjct: 243 AIAGGVAAGAALLFAVPAIALALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVA 302

Query: 287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRN 346
           +DNFSNRNILGRGGFGKVYKGRL DG+LVAVKRLKEERTQGGELQFQTEVEMISMAVHRN
Sbjct: 303 SDNFSNRNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRN 362

Query: 347 LLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           LLRLRGFCMTPTERLLVYP+M NGSVASCLR
Sbjct: 363 LLRLRGFCMTPTERLLVYPYMANGSVASCLR 393

Source: Brassica rapa subsp. campestris

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327422167|gb|AEA76434.1| somatic embryogenesis receptor-like kinase 2 protein [Gossypium hirsutum]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 319/375 (85%), Positives = 340/375 (90%), Gaps = 2/375 (0%)

Query: 4   LERVVWAFLVSILF-FDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFH 62
           + R + +F + ++F  DL  RVA NAEGDALNALKTN+ADPNNVLQSWD TLVNPCTWFH
Sbjct: 5   MTRRLISFCLWLIFVLDLAFRVAGNAEGDALNALKTNMADPNNVLQSWDPTLVNPCTWFH 64

Query: 63  VTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSL 122
           VTCNSENSVTRVDLGNANL+GQLV QLG L NLQYLELYSNNISG +P+ELGNLT LVSL
Sbjct: 65  VTCNSENSVTRVDLGNANLTGQLVPQLGSLPNLQYLELYSNNISGMIPDELGNLTELVSL 124

Query: 123 DLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP 182
           DLYLN L G IPTTLG+L KLRFLRLNNNSL+G IP SLT +++LQVLDLSNN L GD+P
Sbjct: 125 DLYLNKLTGDIPTTLGQLKKLRFLRLNNNSLVGTIPLSLTTIDTLQVLDLSNNGLIGDVP 184

Query: 183 TNGSFSLFTPISFANNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAA 242
            NGSFSLFTPISFANN+LNNPPP+PPPP+ PTPP A SG S+TGAIAGGVAAGAALLFAA
Sbjct: 185 VNGSFSLFTPISFANNKLNNPPPAPPPPIPPTPP-AQSGISSTGAIAGGVAAGAALLFAA 243

Query: 243 PAIALAYWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFG 302
           PAI LA WRKRK  DHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSN+NILGRGGFG
Sbjct: 244 PAIVLALWRKRKAPDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNKNILGRGGFG 303

Query: 303 KVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL 362
           KVYKGRL DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL
Sbjct: 304 KVYKGRLADGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL 363

Query: 363 VYPFMVNGSVASCLR 377
           VYPFMVNGSVASCLR
Sbjct: 364 VYPFMVNGSVASCLR 378

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	419
TAIR|locus:2026097	628	SERK2 "somatic embryogenesis r	0.463	0.308	0.687	1.3e-130
TAIR|locus:2013021	625	SERK1 "somatic embryogenesis r	0.453	0.304	0.696	2.7e-128
TAIR|locus:2040461	620	SERK4 "somatic embryogenesis r	0.890	0.601	0.670	2.8e-128
TAIR|locus:2040471	601	SERK5 "somatic embryogenesis r	0.837	0.584	0.602	5.5e-109
TAIR|locus:2146102	638	NIK1 "NSP-interacting kinase 1	0.307	0.202	0.630	9.5e-74
TAIR|locus:2036636	632	NIK3 "NSP-interacting kinase 3	0.307	0.204	0.635	1.1e-73
TAIR|locus:2145407	613	AT5G10290 [Arabidopsis thalian	0.288	0.197	0.661	2.4e-71
TAIR|locus:2171973	614	AT5G45780 [Arabidopsis thalian	0.267	0.182	0.681	3.9e-64
TAIR|locus:2118811	648	SARK "SENESCENCE-ASSOCIATED RE	0.883	0.570	0.387	1.4e-62
TAIR|locus:2061466	634	AT2G23950 [Arabidopsis thalian	0.883	0.583	0.380	6.2e-62

TAIR|locus:2026097 SERK2 "somatic embryogenesis receptor-like kinase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 1.3e-130, Sum P(2) = 1.3e-130
 Identities = 134/195 (68%), Positives = 153/195 (78%)

Query:     3 KLERVVWAFLVSILF-FDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWF 61
             K E   +  L+S+L  F+ L   +SN EGDAL++L+ NL DPNNVLQSWD TLVNPCTWF
Sbjct:     5 KFEAFGFVCLISLLLLFNSLWLASSNMEGDALHSLRANLVDPNNVLQSWDPTLVNPCTWF 64

Query:    62 HVTCNSENSVTRVDLGNANXXXXXXXXXXXXTNLQYLELYSNNISGKVPEELGNLTNLVS 121
             HVTCN+ENSV RVDLGNA+             NLQYLELYSNNI+G VP +LGNLTNLVS
Sbjct:    65 HVTCNNENSVIRVDLGNADLSGQLVPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVS 124

Query:   122 LDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDI 181
             LDLYLN+  GPIP +LGKL KLRFLRLNNNSL G IP SLTN+ +LQVLDLSNN+L+G +
Sbjct:   125 LDLYLNSFTGPIPDSLGKLFKLRFLRLNNNSLTGPIPMSLTNIMTLQVLDLSNNRLSGSV 184

Query:   182 PTNGSFSLFTPISFA 196
             P NGSFSLFTPISFA
Sbjct:   185 PDNGSFSLFTPISFA 199

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IGI;IMP

GO:0010152 "pollen maturation" evidence=IMP

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IMP

TAIR|locus:2013021 SERK1 "somatic embryogenesis receptor-like kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 667 (239.9 bits), Expect = 2.7e-128, Sum P(2) = 2.7e-128
 Identities = 133/191 (69%), Positives = 149/191 (78%)

Query:     7 VVWAFLVSILFFDLLLRVAS-NAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTC 65
             VV+  L  IL  +  L +AS N EGDAL+ L+  L DPNNVLQSWD TLVNPCTWFHVTC
Sbjct:     6 VVFILLSLILLPNHSLWLASANLEGDALHTLRVTLVDPNNVLQSWDPTLVNPCTWFHVTC 65

Query:    66 NSENSVTRVDLGNANXXXXXXXXXXXXTNLQYLELYSNNISGKVPEELGNLTNLVSLDLY 125
             N+ENSV RVDLGNA              NLQYLELYSNNI+G +P  LGNLTNLVSLDLY
Sbjct:    66 NNENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSLDLY 125

Query:   126 LNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNG 185
             LN+ +GPIP +LGKLSKLRFLRLNNNSL G IP SLTN+ +LQVLDLSNN+L+G +P NG
Sbjct:   126 LNSFSGPIPESLGKLSKLRFLRLNNNSLTGSIPMSLTNITTLQVLDLSNNRLSGSVPDNG 185

Query:   186 SFSLFTPISFA 196
             SFSLFTPISFA
Sbjct:   186 SFSLFTPISFA 196

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0042802 "identical protein binding" evidence=IPI

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0046777 "protein autophosphorylation" evidence=TAS

GO:0009556 "microsporogenesis" evidence=IGI;IMP

GO:0010152 "pollen maturation" evidence=IMP

GO:0043234 "protein complex" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI;IMP

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0007030 "Golgi organization" evidence=IGI

GO:0010227 "floral organ abscission" evidence=IGI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0009880 "embryonic pattern specification" evidence=RCA

GO:0010072 "primary shoot apical meristem specification" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010431 "seed maturation" evidence=RCA

GO:0016310 "phosphorylation" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0051301 "cell division" evidence=RCA

TAIR|locus:2040461 SERK4 "somatic embryogenesis receptor-like kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1259 (448.2 bits), Expect = 2.8e-128, P = 2.8e-128
 Identities = 254/379 (67%), Positives = 283/379 (74%)

Query:     3 KLE-RVVWAFLVSILFFDLLLRVASNAEGDALNALKTNLA--DP-NNVLQSWDATLVNPC 58
             K+E R +  FL  +L F+  LRVA NAEGDAL  LK +L+  DP NNVLQSWDATLV PC
Sbjct:     5 KMEQRSLLCFLYLLLLFNFTLRVAGNAEGDALTQLKNSLSSGDPANNVLQSWDATLVTPC 64

Query:    59 TWFHVTCNSENSVTRVDLGNANXXXXXXXXXXXXTNLQYLELYSNNISGKVPEELGNLTN 118
             TWFHVTCN EN VTRVDLGNA              NLQYLELYSNNI+G++PEELG+L  
Sbjct:    65 TWFHVTCNPENKVTRVDLGNAKLSGKLVPELGQLLNLQYLELYSNNITGEIPEELGDLVE 124

Query:   119 LVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
             LVSLDLY N+++GPIP++LGKL KLRFLRLNNNSL GEIP +LT+V  LQVLD+SNN+L+
Sbjct:   125 LVSLDLYANSISGPIPSSLGKLGKLRFLRLNNNSLSGEIPMTLTSVQ-LQVLDISNNRLS 183

Query:   179 GDIPTNGSFSLFTPISFAXXXXXXXXXXXXXXXXXXXXGASSGNSXXXXXXXXXXXXXXX 238
             GDIP NGSFSLFTPISFA                       SG                 
Sbjct:   184 GDIPVNGSFSLFTPISFANNSLTDLPEPPPTSTSPTPP-PPSGGQMTAAIAGGVAAGAAL 242

Query:   239 XXXXXXXXXXYWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGR 298
                       +W +RKP+DHFFDVPAEEDPEVHLGQLKRF+LREL VATDNFSN+N+LGR
Sbjct:   243 LFAVPAIAFAWWLRRKPQDHFFDVPAEEDPEVHLGQLKRFTLRELLVATDNFSNKNVLGR 302

Query:   299 GGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT 358
             GGFGKVYKGRL DG+LVAVKRLKEERT+GGELQFQTEVEMISMAVHRNLLRLRGFCMTPT
Sbjct:   303 GGFGKVYKGRLADGNLVAVKRLKEERTKGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT 362

Query:   359 ERLLVYPFMVNGSVASCLR 377
             ERLLVYP+M NGSVASCLR
Sbjct:   363 ERLLVYPYMANGSVASCLR 381

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0060548 "negative regulation of cell death" evidence=IMP

GO:1900140 "regulation of seedling development" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0008219 "cell death" evidence=IGI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0009742 "brassinosteroid mediated signaling pathway" evidence=IGI

GO:0010150 "leaf senescence" evidence=IGI

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2040471 SERK5 "somatic embryogenesis receptor-like kinase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1077 (384.2 bits), Expect = 5.5e-109, P = 5.5e-109
 Identities = 223/370 (60%), Positives = 264/370 (71%)

Query:    11 FLVSILFFDLLLRVASNAEGDALNALKTNLAD---PNNVLQSWDATLVNPCTWFHVTCNS 67
             F+  ILF D + RV    + DAL AL+++L+     NN+LQSW+AT V PC+WFHVTCN+
Sbjct:     9 FIWLILFLDFVSRVTGKTQVDALIALRSSLSSGDHTNNILQSWNATHVTPCSWFHVTCNT 68

Query:    68 ENSVTRVDLGNANXXXXXXXXXXXXTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLN 127
             ENSVTR+DLG+AN             NLQYLEL++NNI+G++PEELG+L  LVSLDL+ N
Sbjct:    69 ENSVTRLDLGSANLSGELVPQLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFAN 128

Query:   128 NLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSF 187
             N++GPIP++LGKL KLRFLRL NNSL GEIPRSLT +  L VLD+SNN+L+GDIP NGSF
Sbjct:   129 NISGPIPSSLGKLGKLRFLRLYNNSLSGEIPRSLTAL-PLDVLDISNNRLSGDIPVNGSF 187

Query:   188 SLFTPISFAXXXXXXXXXXXXXXXXXXXXGASSGNSXXXXXXXXXXXXXXXXXXXXXXXX 247
             S FT +SFA                     + SG S                        
Sbjct:   188 SQFTSMSFANNKLRPRPASPSP--------SPSGTSAAIVVGVAAGAALLFALA------ 233

Query:   248 XYWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKG 307
              +W +RK + HF DVPAEEDPEV+LGQ KRFSLREL VAT+ FS RN+LG+G FG +YKG
Sbjct:   234 -WWLRRKLQGHFLDVPAEEDPEVYLGQFKRFSLRELLVATEKFSKRNVLGKGRFGILYKG 292

Query:   308 RLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM 367
             RL D +LVAVKRL EERT+GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP+M
Sbjct:   293 RLADDTLVAVKRLNEERTKGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYM 352

Query:   368 VNGSVASCLR 377
              NGSVASCLR
Sbjct:   353 ANGSVASCLR 362

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

TAIR|locus:2146102 NIK1 "NSP-interacting kinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 9.5e-74, Sum P(2) = 9.5e-74
 Identities = 82/130 (63%), Positives = 104/130 (80%)

Query:   249 YWRKRKPEDHFFDVP-AEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKG 307
             +WR+R  ++ FFDV       EV LG L+RF  RELQ+AT+NFS++N+LG+GG+G VYKG
Sbjct:   270 WWRQRHNQNTFFDVKDGNHHEEVSLGNLRRFGFRELQIATNNFSSKNLLGKGGYGNVYKG 329

Query:   308 RLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM 367
              L D ++VAVKRLK+    GGE+QFQTEVEMIS+AVHRNLLRL GFC+T TE+LLVYP+M
Sbjct:   330 ILGDSTVVAVKRLKDGGALGGEIQFQTEVEMISLAVHRNLLRLYGFCITQTEKLLVYPYM 389

Query:   368 VNGSVASCLR 377
              NGSVAS ++
Sbjct:   390 SNGSVASRMK 399

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051607 "defense response to virus" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2036636 NIK3 "NSP-interacting kinase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 428 (155.7 bits), Expect = 1.1e-73, Sum P(2) = 1.1e-73
 Identities = 82/129 (63%), Positives = 105/129 (81%)

Query:   249 YWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGR 308
             +WR R+ +  FFDV  + DPEV LG LKR++ +EL+ AT++F+++NILGRGG+G VYKG 
Sbjct:   260 WWRYRRNKQIFFDVNEQYDPEVSLGHLKRYTFKELRSATNHFNSKNILGRGGYGIVYKGH 319

Query:   309 LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMV 368
             L DG+LVAVKRLK+    GGE+QFQTEVE IS+A+HRNLLRLRGFC +  ER+LVYP+M 
Sbjct:   320 LNDGTLVAVKRLKDCNIAGGEVQFQTEVETISLALHRNLLRLRGFCSSNQERILVYPYMP 379

Query:   369 NGSVASCLR 377
             NGSVAS L+
Sbjct:   380 NGSVASRLK 388

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2145407 AT5G10290 [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 2.4e-71, Sum P(2) = 2.4e-71
 Identities = 80/121 (66%), Positives = 92/121 (76%)

Query:   257 DHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVA 316
             D F DV  E D  +  GQLKRF+ RELQ+ATDNFS +N+LG+GGFGKVYKG L D + VA
Sbjct:   257 DVFVDVAGEVDRRIAFGQLKRFAWRELQLATDNFSEKNVLGQGGFGKVYKGVLPDNTKVA 316

Query:   317 VKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCL 376
             VKRL +  + GG+  FQ EVEMIS+AVHRNLLRL GFC T TERLLVYPFM N S+A  L
Sbjct:   317 VKRLTDFESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSLAHRL 376

Query:   377 R 377
             R
Sbjct:   377 R 377

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2171973 AT5G45780 [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 3.9e-64, Sum P(2) = 3.9e-64
 Identities = 77/113 (68%), Positives = 91/113 (80%)

Query:   265 EEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEER 324
             ++D E  +G LKRFS RE+Q AT NFS +NILG+GGFG VYKG L +G++VAVKRLK+  
Sbjct:   275 QQDYEFEIGHLKRFSFREIQTATSNFSPKNILGQGGFGMVYKGYLPNGTVVAVKRLKDP- 333

Query:   325 TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
                GE+QFQTEVEMI +AVHRNLLRL GFCMTP ER+LVYP+M NGSVA  LR
Sbjct:   334 IYTGEVQFQTEVEMIGLAVHRNLLRLFGFCMTPEERMLVYPYMPNGSVADRLR 386

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2118811 SARK "SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE" [Arabidopsis thaliana (taxid:3702)]

 Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
 Identities = 146/377 (38%), Positives = 210/377 (55%)

Query:     7 VVWAFLVSILFFDLLLRVAS-NAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTC 65
             ++++FL  + F  L L     N E +AL +++ NL DP+  L +WD   V+PC+W  +TC
Sbjct:    15 LLYSFLF-LCFSTLTLSSEPRNPEVEALISIRNNLHDPHGALNNWDEFSVDPCSWAMITC 73

Query:    66 NSENSVTRVDLGNANXXXXXXXXXXXXTNLQYLELYSNNISGKVPEELGNLTNLVSLDLY 125
             + +N V  +   + +            TNL+ + L +NNISGK+P ELG L  L +LDL 
Sbjct:    74 SPDNLVIGLGAPSQSLSGGLSESIGNLTNLRQVSLQNNNISGKIPPELGFLPKLQTLDLS 133

Query:   126 LNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-- 183
              N  +G IP ++ +LS L++LRLNNNSL G  P SL+ +  L  LDLS N L+G +P   
Sbjct:   134 NNRFSGDIPVSIDQLSSLQYLRLNNNSLSGPFPASLSQIPHLSFLDLSYNNLSGPVPKFP 193

Query:   184 NGSFSLF-TPISFAXXXXXXXXXXXXXXXXXXXXGASSGNSXXXXXXXXXXXXXXXXXXX 242
               +F++   P+                        +SSG                     
Sbjct:   194 ARTFNVAGNPLICRSNPPEICSGSINASPLSVSLSSSSGRRSNRLAIALSVSLGSVVILV 253

Query:   243 XXXXXXYW-RKRKPEDHFFDVPAEEDPEVH-LGQLKRFSLRELQVATDNFSNRNILGRGG 300
                    W RK++      ++  +++  +  LG L+ F+ REL V TD FS++NILG GG
Sbjct:   254 LALGSFCWYRKKQRRLLILNLNDKQEEGLQGLGNLRSFTFRELHVYTDGFSSKNILGAGG 313

Query:   301 FGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTER 360
             FG VY+G+L DG++VAVKRLK+     G+ QF+ E+EMIS+AVH+NLLRL G+C T  ER
Sbjct:   314 FGNVYRGKLGDGTMVAVKRLKDINGTSGDSQFRMELEMISLAVHKNLLRLIGYCATSGER 373

Query:   361 LLVYPFMVNGSVASCLR 377
             LLVYP+M NGSVAS L+
Sbjct:   374 LLVYPYMPNGSVASKLK 390

GO:0004672 "protein kinase activity" evidence=IEA;ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010150 "leaf senescence" evidence=IMP

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

TAIR|locus:2061466 AT2G23950 [Arabidopsis thaliana (taxid:3702)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 143/376 (38%), Positives = 209/376 (55%)

Query:     8 VWAFLVSILFFDL--LLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTC 65
             +++ L+ + FF    L     N E +AL  +K  L DP+ V ++WD   V+PC+W  ++C
Sbjct:    11 IFSVLLLLCFFVTCSLSSEPRNPEVEALINIKNELHDPHGVFKNWDEFSVDPCSWTMISC 70

Query:    66 NSENSVTRVDLGNANXXXXXXXXXXXXTNLQYLELYSNNISGKVPEELGNLTNLVSLDLY 125
             +S+N V  +   + +            TNL+ + L +NNISGK+P E+ +L  L +LDL 
Sbjct:    71 SSDNLVIGLGAPSQSLSGTLSGSIGNLTNLRQVSLQNNNISGKIPPEICSLPKLQTLDLS 130

Query:   126 LNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-- 183
              N  +G IP ++ +LS L++LRLNNNSL G  P SL+ +  L  LDLS N L G +P   
Sbjct:   131 NNRFSGEIPGSVNQLSNLQYLRLNNNSLSGPFPASLSQIPHLSFLDLSYNNLRGPVPKFP 190

Query:   184 NGSFSLF-TPISFAXXXXXXXXXXXXXXXXXXXXGASSGNSXXXXXXXXXXXXXXXXXXX 242
               +F++   P+                        +SSG                     
Sbjct:   191 ARTFNVAGNPLICKNSLPEICSGSISASPLSVSLRSSSGRRTNILAVALGVSLGFAVSVI 250

Query:   243 XXXXXXYWRKRKPEDHFFDVP-AEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGF 301
                   ++RK++       +   +E+  + LG L+ F+ REL VATD FS+++ILG GGF
Sbjct:   251 LSLGFIWYRKKQRRLTMLRISDKQEEGLLGLGNLRSFTFRELHVATDGFSSKSILGAGGF 310

Query:   302 GKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL 361
             G VY+G+  DG++VAVKRLK+     G  QF+TE+EMIS+AVHRNLLRL G+C + +ERL
Sbjct:   311 GNVYRGKFGDGTVVAVKRLKDVNGTSGNSQFRTELEMISLAVHRNLLRLIGYCASSSERL 370

Query:   362 LVYPFMVNGSVASCLR 377
             LVYP+M NGSVAS L+
Sbjct:   371 LVYPYMSNGSVASRLK 386

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94F62	BAK1_ARATH	2, ., 7, ., 1, 1, ., 1	0.8423	0.8782	0.5983	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.946
3rd Layer	2.7.11	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	419
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-29
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-25
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-21
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-20
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-17
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-16
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	4e-16
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	3e-15
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	4e-14
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	4e-14
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	7e-14
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	4e-13
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-12
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	4e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-12
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	1e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-10
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	2e-09
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	2e-09
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	6e-09
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	1e-08
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	1e-08
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	6e-08
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	2e-07
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	3e-07
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	4e-07
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	4e-07
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	4e-07
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	5e-07
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	6e-07
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	6e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-07
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	2e-06
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	2e-06
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	3e-06
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	4e-06
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	4e-06
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	4e-06
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	5e-06
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	6e-06
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	6e-06
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	8e-06
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	8e-06
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-05
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	3e-05
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	4e-05
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	4e-05
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	4e-05
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	5e-05
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	5e-05
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	7e-05
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	8e-05
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	9e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	1e-04
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	1e-04
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	1e-04
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	2e-04
cd05087	269	cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of t	2e-04
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	3e-04
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	4e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	4e-04
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	7e-04
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	7e-04
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	8e-04
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	0.001
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	0.001
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	0.001
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	0.002
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	0.002
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	0.003
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	0.003
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	0.003
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	0.004
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	0.004
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	0.004
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	0.004
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  121 bits (305), Expect = 1e-29
 Identities = 62/195 (31%), Positives = 105/195 (53%), Gaps = 24/195 (12%)

Query: 11  FLVSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENS 70
            +  + F  L   +    E + L + K+++ DP   L +W+++  + C W  +TCN+ + 
Sbjct: 12  LIFMLFFLFLNFSMLHAEELELLLSFKSSINDPLKYLSNWNSS-ADVCLWQGITCNNSSR 70

Query: 71  VTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEEL----------------- 113
           V  +DL   N+SG++ S + +L  +Q + L +N +SG +P+++                 
Sbjct: 71  VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF 130

Query: 114 ------GNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSL 167
                 G++ NL +LDL  N L+G IP  +G  S L+ L L  N L+G+IP SLTN+ SL
Sbjct: 131 TGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190

Query: 168 QVLDLSNNKLTGDIP 182
           + L L++N+L G IP
Sbjct: 191 EFLTLASNQLVGQIP 205

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  109 bits (273), Expect = 1e-25
 Identities = 58/137 (42%), Positives = 83/137 (60%), Gaps = 1/137 (0%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           S+  +DL   NL+G + S LG L NLQYL LY N +SG +P  + +L  L+SLDL  N+L
Sbjct: 237 SLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN-GSFS 188
           +G IP  + +L  L  L L +N+  G+IP +LT++  LQVL L +NK +G+IP N G  +
Sbjct: 297 SGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN 356

Query: 189 LFTPISFANNQLNNPPP 205
             T +  + N L    P
Sbjct: 357 NLTVLDLSTNNLTGEIP 373

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  104 bits (262), Expect = 4e-24
 Identities = 51/107 (47%), Positives = 74/107 (69%)

Query: 76  LGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPT 135
           L +  L GQ+  +LGQ+ +L+++ L  NN+SG++P E+G LT+L  LDL  NNL GPIP+
Sbjct: 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254

Query: 136 TLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP 182
           +LG L  L++L L  N L G IP S+ ++  L  LDLS+N L+G+IP
Sbjct: 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  104 bits (260), Expect = 8e-24
 Identities = 51/107 (47%), Positives = 72/107 (67%)

Query: 76  LGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPT 135
           LG  NLSG++  ++G LT+L +L+L  NN++G +P  LGNL NL  L LY N L+GPIP 
Sbjct: 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP 278

Query: 136 TLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP 182
           ++  L KL  L L++NSL GEIP  +  + +L++L L +N  TG IP
Sbjct: 279 SIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 98.8 bits (246), Expect = 4e-22
 Identities = 63/163 (38%), Positives = 89/163 (54%), Gaps = 3/163 (1%)

Query: 74  VDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPI 133
           +DLG   L G++ + L  LT+L++L L SN + G++P ELG + +L  + L  NNL+G I
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228

Query: 134 PTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPI 193
           P  +G L+ L  L L  N+L G IP SL N+ +LQ L L  NKL+G IP    FSL   I
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP-PSIFSLQKLI 287

Query: 194 S--FANNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAA 234
           S   ++N L+   P     LQ         N+ TG I   + +
Sbjct: 288 SLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 97.2 bits (242), Expect = 1e-21
 Identities = 89/330 (26%), Positives = 143/330 (43%), Gaps = 54/330 (16%)

Query: 73  RVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGP 132
            +DL     SG +  +LG L+ L  L+L  N +SG++P+EL +   LVSLDL  N L+G 
Sbjct: 479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ 538

Query: 133 IPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTP 192
           IP +  ++  L  L L+ N L GEIP++L NV SL  +++S+N L G +P+ G+F     
Sbjct: 539 IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINA 598

Query: 193 ISFANNQL--NNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAAPAIALAYW 250
            + A N         S  PP +      S     T  +      GA L+ A  A    + 
Sbjct: 599 SAVAGNIDLCGGDTTSGLPPCKRVRKTPSWWFYITCTL------GAFLVLALVAFGFVFI 652

Query: 251 RKRKP-------------EDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILG 297
           R R               E  FFD              K  ++ ++  +       N++ 
Sbjct: 653 RGRNNLELKRVENEDGTWELQFFDSKV----------SKSITINDILSSL---KEENVIS 699

Query: 298 RGGFGKVYKGR-LTDGSLVAVKRLKE-------ERTQGGELQFQTEVEMISMAVHRNLLR 349
           RG  G  YKG+ + +G    VK + +       E    G+LQ            H N+++
Sbjct: 700 RGKKGASYKGKSIKNGMQFVVKEINDVNSIPSSEIADMGKLQ------------HPNIVK 747

Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
           L G C +     L++ ++   +++  LR +
Sbjct: 748 LIGLCRSEKGAYLIHEYIEGKNLSEVLRNL 777

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 93.7 bits (233), Expect = 1e-20
 Identities = 68/233 (29%), Positives = 100/233 (42%), Gaps = 47/233 (20%)

Query: 32  ALNALKTNLADPNNVLQSWDATLVNPCT-----WFHVTCNSENSVTR-----VDLGNANL 81
           AL  LK++L  P      W+    +PC      W    C  +++  +     + L N  L
Sbjct: 376 ALQTLKSSLGLPLRF--GWNG---DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGL 430

Query: 82  SGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLS 141
            G + + + +L +LQ + L  N+I G +P  LG++T+L  LDL  N+ NG IP +LG+L+
Sbjct: 431 RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 142 KLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLN 201
            LR L LN NSL G +P +L                 G    + +   FT         +
Sbjct: 491 SLRILNLNGNSLSGRVPAAL-----------------GGRLLHRASFNFT---------D 524

Query: 202 NPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAAPAIALAYWRKRK 254
           N      P L+   P  S G  A   IA GV+     L     I    W KR+
Sbjct: 525 NAGLCGIPGLRACGPHLSVG--AKIGIAFGVSVAFLFL----VICAMCWWKRR 571

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 89.9 bits (223), Expect = 3e-19
 Identities = 54/135 (40%), Positives = 80/135 (59%), Gaps = 2/135 (1%)

Query: 74  VDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPI 133
           +DL N  LSG++ + +G  ++L+ L+L  N + GK+P  L NLT+L  L L  N L G I
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 134 PTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN-GSFSLFTP 192
           P  LG++  L+++ L  N+L GEIP  +  + SL  LDL  N LTG IP++ G+      
Sbjct: 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264

Query: 193 ISFANNQLNNP-PPS 206
           +    N+L+ P PPS
Sbjct: 265 LFLYQNKLSGPIPPS 279

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 88.8 bits (220), Expect = 7e-19
 Identities = 43/104 (41%), Positives = 63/104 (60%)

Query: 80  NLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGK 139
             SG++   LG+  NL  L+L +NN++G++PE L +  NL  L L+ N+L G IP +LG 
Sbjct: 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402

Query: 140 LSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT 183
              LR +RL +NS  GE+P   T +  +  LD+SNN L G I +
Sbjct: 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS 446

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 86.4 bits (214), Expect = 4e-18
 Identities = 47/109 (43%), Positives = 67/109 (61%)

Query: 74  VDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPI 133
           +DL + +LSG++   + QL NL+ L L+SNN +GK+P  L +L  L  L L+ N  +G I
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348

Query: 134 PTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP 182
           P  LGK + L  L L+ N+L GEIP  L +  +L  L L +N L G+IP
Sbjct: 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 85.3 bits (211), Expect = 1e-17
 Identities = 45/103 (43%), Positives = 61/103 (59%)

Query: 80  NLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGK 139
           N +G++   L  L  LQ L+L+SN  SG++P+ LG   NL  LDL  NNL G IP  L  
Sbjct: 319 NFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS 378

Query: 140 LSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP 182
              L  L L +NSL GEIP+SL    SL+ + L +N  +G++P
Sbjct: 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421

Length = 968

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 78.7 bits (195), Expect = 1e-16
 Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 295 ILGRGGFGKVYKGRLTDGS-----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            LG G FG+VYKG+L          VAVK LKE+ ++    +F  E  ++    H N+++
Sbjct: 6   KLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVK 65

Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLR 377
           L G C       +V  +M  G + S LR
Sbjct: 66  LLGVCTEEEPLYIVMEYMEGGDLLSYLR 93

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 77.6 bits (192), Expect = 4e-16
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 295 ILGRGGFGKVYKGRLTDGS-----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            LG G FG+VYKG L          VAVK LKE+ ++    +F  E  ++    H N+++
Sbjct: 6   KLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIVK 65

Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLR 377
           L G C      ++V  +M  G +   LR
Sbjct: 66  LLGVCTEEEPLMIVMEYMPGGDLLDYLR 93

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 74.9 bits (185), Expect = 3e-15
 Identities = 29/82 (35%), Positives = 39/82 (47%), Gaps = 4/82 (4%)

Query: 294 NILGRGGFGKVYKGRLTDGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
             LG G FG+VYKG+L         VAVK LKE+ ++     F  E  ++    H N++R
Sbjct: 1   KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVR 60

Query: 350 LRGFCMTPTERLLVYPFMVNGS 371
           L G C       LV  +M  G 
Sbjct: 61  LLGVCTEEEPLYLVLEYMEGGD 82

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 71.8 bits (177), Expect = 4e-14
 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 296 LGRGGFGKVYKGRLTDGS-----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRL 350
           LG G FG+VYKG L          VAVK LKE  ++    +F  E  ++    H N++RL
Sbjct: 7   LGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVRL 66

Query: 351 RGFCMTPTERLLVYPFMVNGSVASCLR 377
            G C       +V  +M  G +   LR
Sbjct: 67  LGVCTQGEPLYIVTEYMPGGDLLDFLR 93

Length = 258

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 71.4 bits (176), Expect = 4e-14
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 290 FSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLL 348
           +     LG G FGKVY  R    G LVA+K +K+++ +    +   E++++    H N++
Sbjct: 1   YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIV 60

Query: 349 RLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           RL        +  LV  +   G +   L+
Sbjct: 61  RLYDVFEDEDKLYLVMEYCEGGDLFDLLK 89

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 70.0 bits (172), Expect = 7e-14
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 7/113 (6%)

Query: 296 LGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 354
           LG GGFG VY  R    G  VA+K +K+E +     +   E+E++    H N+++L G  
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60

Query: 355 MTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHF 407
                  LV  +   GS+   L+            S    +  +  +++ L +
Sbjct: 61  EDENHLYLVMEYCEGGSLKDLLK------ENEGKLSEDEILRILLQILEGLEY 107

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 69.0 bits (169), Expect = 4e-13
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 6/88 (6%)

Query: 296 LGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
           LG G FGKV+ G         D  LVAVK LKE  +      F+ E E+++   H N+++
Sbjct: 13  LGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVK 72

Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLR 377
             G C      ++V+ +M +G +   LR
Sbjct: 73  FYGVCTEGDPPIMVFEYMEHGDLNKFLR 100

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 67.3 bits (164), Expect = 3e-12
 Identities = 48/144 (33%), Positives = 82/144 (56%), Gaps = 4/144 (2%)

Query: 65  CNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDL 124
              ++++  +DL +  +   L S L  L NL+ L+L  N++S  +P+ L NL+NL +LDL
Sbjct: 136 GLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL 193

Query: 125 YLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN 184
             N ++  +P  +  LS L  L L+NNS++ E+  SL+N+ +L  L+LSNNKL     + 
Sbjct: 194 SGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESI 251

Query: 185 GSFSLFTPISFANNQLNNPPPSPP 208
           G+ S    +  +NNQ+++      
Sbjct: 252 GNLSNLETLDLSNNQISSISSLGS 275

Length = 394

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 65.7 bits (161), Expect = 4e-12
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)

Query: 295 ILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQ-FQTEVEMISMAVHRNLLRLRG 352
            LG G FG VYK +    G +VAVK LK+   +  + Q  + E+ ++    H N++RL  
Sbjct: 6   KLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLID 65

Query: 353 FCMTPTERLLVYPFMVNGSVASCLR 377
                    LV  +   G +   L 
Sbjct: 66  AFEDKDHLYLVMEYCEGGDLFDYLS 90

Length = 260

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 67.2 bits (164), Expect = 6e-12
 Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 3/143 (2%)

Query: 65  CNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDL 124
           C+S N + ++ L + +L G++   LG   +L+ + L  N+ SG++P E   L  +  LD+
Sbjct: 377 CSSGN-LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435

Query: 125 YLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN 184
             NNL G I +    +  L+ L L  N   G +P S  +   L+ LDLS N+ +G +P  
Sbjct: 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKR-LENLDLSRNQFSGAVPRK 494

Query: 185 -GSFSLFTPISFANNQLNNPPPS 206
            GS S    +  + N+L+   P 
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPD 517

Length = 968

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 55.8 bits (135), Expect = 1e-10
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 26 SNAEGDALNALKTNL-ADPNNVLQSWDATLVNPCTWFHVTCN 66
           N + DAL A K++L  DP+  L SW+ +  +PC+W  VTC+
Sbjct: 1  LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 61.1 bits (148), Expect = 3e-10
 Identities = 47/135 (34%), Positives = 75/135 (55%), Gaps = 5/135 (3%)

Query: 72  TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNG 131
             +DL   +LS  L   L  L+NL  L+L  N IS  +P E+  L+ L  LDL  N++  
Sbjct: 166 KNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII- 222

Query: 132 PIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFT 191
            + ++L  L  L  L L+NN L  ++P S+ N+++L+ LDLSNN+++  I + GS +   
Sbjct: 223 ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISSLGSLTNLR 280

Query: 192 PISFANNQLNNPPPS 206
            +  + N L+N  P 
Sbjct: 281 ELDLSGNSLSNALPL 295

Length = 394

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 26/83 (31%), Positives = 42/83 (50%)

Query: 296 LGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM 355
           +G+G FG VYKG L   + VAVK  +       + +F  E E++    H N+++L G C+
Sbjct: 3   IGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCV 62

Query: 356 TPTERLLVYPFMVNGSVASCLRG 378
                 +V   +  GS+ + LR 
Sbjct: 63  QKQPIYIVMELVPGGSLLTFLRK 85

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 284 QVATDNFSNRNILGRGGFGKVYKG----RLTDGS--LVAVKRLKEERTQGGELQFQTEVE 337
           +V  D+ +    LG G FG+VY+G    R  D     VAVK L E  ++  E  F  E  
Sbjct: 2   EVPRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEAL 61

Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++S   H+N++RL G       R ++   M  G + S LR
Sbjct: 62  IMSKFNHQNIVRLIGVSFERLPRFILLELMAGGDLKSFLR 101

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 56.2 bits (135), Expect = 6e-09
 Identities = 28/73 (38%), Positives = 45/73 (61%), Gaps = 3/73 (4%)

Query: 295 ILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 354
           +LG+G FG+V+KG L D + VAVK  KE+  Q  +++F +E  ++    H N+++L G C
Sbjct: 2   LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVC 61

Query: 355 MTPTERLLVYPFM 367
              T+R  +Y  M
Sbjct: 62  ---TQRQPIYIVM 71

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 7/88 (7%)

Query: 296 LGRGGFGKVYKGRL------TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
           LG G FGKV+           D  LVAVK LKE  ++     FQ E E++++  H++++R
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA-SESARQDFQREAELLTVLQHQHIVR 71

Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLR 377
             G C      L+V+ +M +G +   LR
Sbjct: 72  FYGVCTEGRPLLMVFEYMRHGDLNRFLR 99

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 289 NFSNRNILGRGGFGKVYKG-RLTDGSLVAVKRLKEERTQGGELQ-FQTEVEMISMAVHRN 346
           N+   +++GRG FG VYKG  L  G  VA+K++  E+ +   L+    E++++    H N
Sbjct: 1   NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPN 60

Query: 347 LLRLRGFCMTPTERLLVYPFMVNGSVAS 374
           +++  G   T     ++  +  NGS+  
Sbjct: 61  IVKYIGSIETSDSLYIILEYAENGSLRQ 88

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 294 NILGRGGFGKVYKGRLTDGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++G G FG+V +GRL         VA+K LK   +    L F TE  ++    H N++R
Sbjct: 10  KVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIR 69

Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLR 377
           L G        +++  +M NGS+   LR
Sbjct: 70  LEGVVTKSRPVMIITEYMENGSLDKFLR 97

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 6/81 (7%)

Query: 296 LGRGGFGKVYKGRLTDGS------LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
           LG G FGKVYKG LT  +       VA+K LKE      + +F+ E E++S   H N++ 
Sbjct: 13  LGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVC 72

Query: 350 LRGFCMTPTERLLVYPFMVNG 370
           L G C       +++ ++ +G
Sbjct: 73  LLGVCTKEQPTCMLFEYLAHG 93

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%)

Query: 294 NILGRGGFGKVYKGRLTD-GSLVAVKRLKEERTQGGEL-QFQTEVEMISMAVHRNLLRLR 351
            +LGRG FG VY     D G L+AVK ++       EL   + E+ ++S   H N++R  
Sbjct: 6   ELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYY 65

Query: 352 GFCMTPTER-LLVY-PFMVNGSVASCLR 377
           G      +  L ++  ++  GS++S L+
Sbjct: 66  GSERDEEKNTLNIFLEYVSGGSLSSLLK 93

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 295 ILGRGGFGKVYKGRLT-DGSL----VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
           +LG G FG VYKG    +G      VA+K L+EE +     +   E  +++   H +++R
Sbjct: 14  VLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVR 73

Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLR 377
           L G C++     L+   M  G +   +R
Sbjct: 74  LLGICLSSQ-VQLITQLMPLGCLLDYVR 100

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 6/90 (6%)

Query: 296 LGRGGFGKVYKGRL------TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
           +G+G FG+V++ R          ++VAVK LKEE +   +  FQ E  +++   H N+++
Sbjct: 13  IGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVK 72

Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
           L G C       L++ +M  G +   LR  
Sbjct: 73  LLGVCAVGKPMCLLFEYMAYGDLNEFLRHR 102

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 294 NILGRGGFGKVYKGRLTD-------GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRN 346
           N LG G FG+VY+G  TD          VAVK L++  T   + +F  E  ++S   H N
Sbjct: 1   NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPN 60

Query: 347 LLRLRGFCMTPTERLLVYPFMVNGSVASCLRG 378
           +++L G C+    + ++   M  G + S LR 
Sbjct: 61  IVKLLGVCLLNEPQYIIMELMEGGDLLSYLRD 92

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLT-----DGSLVAVKRLKEERTQGGELQFQTEVEMISMA 342
            +      LG G FGKV   R        G  VAVK L     +     F+ E+E++   
Sbjct: 4   RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTL 63

Query: 343 VHRNLLRLRGFCMTPTER--LLVYPFMVNGSVASCLRG 378
            H N+++ +G C  P  R   L+  ++ +GS+   L+ 
Sbjct: 64  DHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQR 101

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 50.3 bits (120), Expect = 6e-07
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 295 ILGRGGFGKVYKGRLT----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRL 350
           ++G G FG+V +GRL         VA+K LK   T+     F +E  ++    H N++ L
Sbjct: 11  VIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHL 70

Query: 351 RGFCMTPTERLLVYPFMVNGSVASCLR---GMFIV 382
            G        +++  FM NG++ S LR   G F V
Sbjct: 71  EGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTV 105

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 50.3 bits (120), Expect = 6e-07
 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 296 LGRGGFGKVYKG---RLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG 352
           +G G FGKV  G   R    + V VK L+   T   +L F  EV+      H N+L+  G
Sbjct: 3   IGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLG 62

Query: 353 FCMTPTERLLVYPFMVNGSVASCLR 377
            C+     LLV  F   G + + LR
Sbjct: 63  QCIESIPYLLVLEFCPLGDLKNYLR 87

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.7 bits (121), Expect = 7e-07
 Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 5/137 (3%)

Query: 69  NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN 128
           +++  +DL    +S  L  ++  L+ L+ L+L +N+I  ++   L NL NL  L+L  N 
Sbjct: 186 SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK 243

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFS 188
           L   +P ++G LS L  L L+NN        SL ++ +L+ LDLS N L+  +P      
Sbjct: 244 LE-DLPESIGNLSNLETLDLSNN--QISSISSLGSLTNLRELDLSGNSLSNALPLIALLL 300

Query: 189 LFTPISFANNQLNNPPP 205
           L   +            
Sbjct: 301 LLLELLLNLLLTLKALE 317

Length = 394

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 290 FSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
           F+    LG G FG+V++G   +   VA+K LK +     +  FQ EV+ +    H++L+ 
Sbjct: 8   FTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQ-DFQKEVQALKRLRHKHLIS 66

Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLR 377
           L   C       ++   M  GS+ + LR
Sbjct: 67  LFAVCSVGEPVYIITELMEKGSLLAFLR 94

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 4/98 (4%)

Query: 284 QVATDNFSNRNILGRGGFGKVYKGRL-TDG---SLVAVKRLKEERTQGGELQFQTEVEMI 339
           ++   + + + ++G G FG+V++G L   G     VA+K LK   T+     F +E  ++
Sbjct: 1   EIHPSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIM 60

Query: 340 SMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
               H N++RL G        +++  +M NG++   LR
Sbjct: 61  GQFSHHNIIRLEGVVTKFKPAMIITEYMENGALDKYLR 98

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 12/102 (11%)

Query: 296 LGRGGFGKVYKGR------LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
           LG G FGKV+           D  LVAVK LK+  T      FQ E E+++   H ++++
Sbjct: 13  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDP-TLAARKDFQREAELLTNLQHEHIVK 71

Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLR-----GMFIVSGFP 386
             G C      ++V+ +M +G +   LR      M +V G P
Sbjct: 72  FYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQP 113

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 11/93 (11%)

Query: 295 ILGRGGFGKVYKGRLT--DGSL--VAVKRLKEERTQGGELQ-FQTEVEMISMAVHRNLLR 349
           ILG G FG V +G+L+  DGS   VAVK +K +     E++ F +E   +    H N+++
Sbjct: 6   ILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMK 65

Query: 350 LRGFCMTPTER------LLVYPFMVNGSVASCL 376
           L G C   +        +++ PFM +G + S L
Sbjct: 66  LIGVCFEASSLQKIPKPMVILPFMKHGDLHSFL 98

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)

Query: 296 LGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM 355
           +G G FG V+ G   +   VA+K ++E      E  F  E +++    H  L++L G C 
Sbjct: 12  IGSGQFGLVWLGYWLEKRKVAIKTIREGAMS--EEDFIEEAQVMMKLSHPKLVQLYGVCT 69

Query: 356 TPTERLLVYPFMVNGSVASCLR 377
             +   LV+ FM +G ++  LR
Sbjct: 70  ERSPICLVFEFMEHGCLSDYLR 91

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 5/89 (5%)

Query: 294 NILGRGGFGKVYKGRLTDGSLVAVKR--LKEERTQGGELQF---QTEVEMISMAVHRNLL 348
            +LG+G +G VY G    G L+AVK+  L        E ++   Q EV+++    H N++
Sbjct: 6   EVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIV 65

Query: 349 RLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +  G C+      +   F+  GS++S L 
Sbjct: 66  QYLGTCLDDNTISIFMEFVPGGSISSILN 94

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 5/120 (4%)

Query: 293 RNILGRGGFGKVYKGRLTDGSL---VAVKRLKEERTQGGELQFQTEVEMI-SMAVHRNLL 348
           ++++G G FG+V K R+    L    A+KR+KE  ++     F  E+E++  +  H N++
Sbjct: 12  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 71

Query: 349 RLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFA 408
            L G C       L   +  +G++   LR   ++   P+ F+     A   S  Q LHFA
Sbjct: 72  NLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPA-FAIANSTASTLSSQQLLHFA 130

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 47.8 bits (112), Expect = 6e-06
 Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 9/128 (7%)

Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGEL--QFQTEVE-MISMAVHR 345
           ++     LG G FG+VY  R  D  LVA+K L ++     +   +F  E++ + S+    
Sbjct: 1   SYRILRKLGEGSFGEVYLAR--DRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPP 58

Query: 346 NLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSL 405
           N+++L  F        LV  ++  GS    L  +    G     S    +  +  ++ +L
Sbjct: 59  NIVKLYDFFQDEGSLYLVMEYVDGGS----LEDLLKKIGRKGPLSESEALFILAQILSAL 114

Query: 406 HFAKYSCV 413
            +     +
Sbjct: 115 EYLHSKGI 122

Length = 384

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 6/66 (9%)

Query: 295 ILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLL 348
            LGRG FG+V+  +          +LV VK L++ + +  + +F+ E++M     H+N++
Sbjct: 12  TLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVV 71

Query: 349 RLRGFC 354
           RL G C
Sbjct: 72  RLLGLC 77

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 11/76 (14%)

Query: 296 LGRGGFGKVYKG--RLTDGSL--VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLR 351
           LG G FG V KG   +  G    VAVK LK+E    G+ +F  E  +++   H  ++RL 
Sbjct: 3   LGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLI 62

Query: 352 GFCMTPTERLLVYPFM 367
           G C          P M
Sbjct: 63  GVCKGE-------PLM 71

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 46.4 bits (111), Expect = 8e-06
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 16/123 (13%)

Query: 290 FSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLL 348
           F     +G+GGFG+VYK R    G  VA+K +K E  +  E     E++++    H N++
Sbjct: 2   FEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIIN-EIQILKKCKHPNIV 60

Query: 349 RLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFF---IAFV-QSLIQS 404
           +  G  +   E  +V  F   GS+   L+            +       IA+V + L++ 
Sbjct: 61  KYYGSYLKKDELWIVMEFCSGGSLKDLLKS----------TNQTLTESQIAYVCKELLKG 110

Query: 405 LHF 407
           L +
Sbjct: 111 LEY 113

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)

Query: 296 LGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 354
           +GRG FG+V+ GRL  D + VAVK  +E      + +F  E  ++    H N++RL G C
Sbjct: 3   IGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 62

Query: 355 MTPTERLLVYPFMVNGSVASCLR 377
                  +V   +  G   + LR
Sbjct: 63  TQKQPIYIVMELVQGGDFLTFLR 85

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 22/60 (36%), Positives = 29/60 (48%)

Query: 94  NLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSL 153
           NL+ L+L +N ++         L NL  LDL  NNL    P     L  LR L L+ N+L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 296 LGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM 355
           +G+G FG V  G    G  VAVK LK++        F  E  +++   H NL++L G  +
Sbjct: 14  IGKGEFGDVMLG-DYRGQKVAVKCLKDD--STAAQAFLAEASVMTTLRHPNLVQLLGVVL 70

Query: 356 TPTERLLVYPFMVNGSVASCLR 377
                 +V  +M  GS+   LR
Sbjct: 71  QGNPLYIVTEYMAKGSLVDYLR 92

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 45.1 bits (106), Expect = 4e-05
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 5/73 (6%)

Query: 295 ILGRGGFGKVYKG-RLTDGSLV----AVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
           +LG G FG VYKG  + +G  V    A+K L E       ++F  E  +++   H +L+R
Sbjct: 14  VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVR 73

Query: 350 LRGFCMTPTERLL 362
           L G C++PT +L+
Sbjct: 74  LLGVCLSPTIQLV 86

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 293 RNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLR 351
           ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++    H NL++L 
Sbjct: 11  KHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEIKHPNLVQLL 68

Query: 352 GFCMTPTERLLVYPFMVNGSVASCLR 377
           G C       ++  FM  G++   LR
Sbjct: 69  GVCTREPPFYIITEFMTYGNLLDYLR 94

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 7/67 (10%)

Query: 295 ILGRGGFGKVYKGRL------TDGSLVAVKRLKEERTQGGELQFQTEVEMISM-AVHRNL 347
            LG G FG+V K          + S VAVK LK++ T+       +E+EM+ M   H+N+
Sbjct: 19  PLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNI 78

Query: 348 LRLRGFC 354
           + L G C
Sbjct: 79  INLLGVC 85

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 7/95 (7%)

Query: 295 ILGRGGFGKVYKGRLTDGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRL 350
           ++G G FG+V  GRL         VA+K LK   T+     F +E  ++    H N++ L
Sbjct: 11  VIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHL 70

Query: 351 RGFCMTPTERLLVYPFMVNGSVASCLR---GMFIV 382
            G        ++V  +M NGS+ + LR   G F V
Sbjct: 71  EGVVTKSKPVMIVTEYMENGSLDAFLRKHDGQFTV 105

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 44.4 bits (105), Expect = 5e-05
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 10/93 (10%)

Query: 295 ILGRGGFGKVYKG-RLTDGSLVAVKRLKEERTQGG---ELQ------FQTEVEMISMAVH 344
           ++G+G +G+VY    +T G ++AVK+++   T  G     Q       ++E+E +    H
Sbjct: 8   LIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDH 67

Query: 345 RNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
            N+++  GF  T     +   ++  GS+ SCLR
Sbjct: 68  LNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLR 100

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 44.3 bits (104), Expect = 7e-05
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 296 LGRGGFGKVYKGRL------TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
           LG G FGKV+           D  LVAVK LK+  +      F  E E+++   H ++++
Sbjct: 13  LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA-SDNARKDFHREAELLTNLQHEHIVK 71

Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLRG 378
             G C+     ++V+ +M +G +   LR 
Sbjct: 72  FYGVCVEGDPLIMVFEYMKHGDLNKFLRA 100

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 296 LGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM 355
           LG G FG V+ G+      VA+K ++E      E  F  E +++    H NL++L G C 
Sbjct: 12  LGSGQFGVVHLGKWRGKIDVAIKMIREGAMS--EDDFIEEAKVMMKLSHPNLVQLYGVCT 69

Query: 356 TPTERLLVYPFMVNGSVASCLRGM 379
                 +V  +M NG + + LR  
Sbjct: 70  KQRPIFIVTEYMANGCLLNYLRER 93

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 14/91 (15%)

Query: 296 LGRGGFGKVYKGR---LTD--GSLVAVKRLKEERTQGGELQ-FQTEVEMISMAVHRNLLR 349
           LG+G FG V   R   L D  G +VAVK+L+    +   L+ F+ E+E++    H N+++
Sbjct: 12  LGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAE--HLRDFEREIEILKSLQHDNIVK 69

Query: 350 LRGFCMTPTER--LLVYPFMVNGSVASCLRG 378
            +G C +   R   LV  ++  G     LR 
Sbjct: 70  YKGVCYSAGRRNLRLVMEYLPYG----SLRD 96

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 22/60 (36%), Positives = 31/60 (51%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           ++  +DL N  L+         L NL+ L+L  NN++   PE    L +L SLDL  NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 7/88 (7%)

Query: 296 LGRGGFGKVYKG-RLTDGSLVAVKRLK----EERTQGGELQFQTEVEMISMAVHRNLLRL 350
           LG G FG VY+G  L DG   AVK +      +  Q    Q + E+ ++S   H N+++ 
Sbjct: 8   LGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQY 67

Query: 351 RGFCMTPTERLLVYPFMVN-GSVASCLR 377
            G      + L ++  +V  GS+A  L+
Sbjct: 68  LG-TEREEDNLYIFLELVPGGSLAKLLK 94

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 294 NILGRGGFGKVYKGRLTDGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++G+G FG VY G L D        AVK L          QF  E  ++    H N+L 
Sbjct: 1   RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLS 60

Query: 350 LRGFCMTPTE--RLLVYPFMVNGSVASCLR 377
           L G C+ P+E   L+V P+M +G + + +R
Sbjct: 61  LLGICL-PSEGSPLVVLPYMKHGDLRNFIR 89

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 10/81 (12%)

Query: 294 NILGRGGFGKVYKGR-LTDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLR 351
             +G G +G+VYK R    G LVA+K+++ E   +G  +    E++++    H N++RL+
Sbjct: 5   AQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLK 64

Query: 352 GFCMTPTERL-----LVYPFM 367
                 T +      +V+ +M
Sbjct: 65  EIV---TSKGKGSIYMVFEYM 82

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 296 LGRGGFGKVYKGRLT-DGSL--VAVKRLKEERTQGGELQ-FQTEVEMISMAVHRNLLRLR 351
           LG G FG V +G+L  D S+  VAVK +K       E++ F +E   +    H N++RL 
Sbjct: 7   LGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLI 66

Query: 352 GFCMTPTER------LLVYPFMVNGSVASCL 376
           G C+   E       +++ PFM +G + S L
Sbjct: 67  GVCLQTVESEGYPSPVVILPFMKHGDLHSFL 97

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 296 LGRGGFGKVYKGRLTDG---SLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG 352
           +G G FGKV  G +  G   + V VK L+   +   +++F  E +      H NLL+  G
Sbjct: 3   IGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLG 62

Query: 353 FCMTPTERLLVYPFMVNGSVASCLR 377
            C   T  LLV  F   G +   LR
Sbjct: 63  QCTEVTPYLLVMEFCPLGDLKGYLR 87

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells. Aatyk1 has been implicated in neural differentiation, and is a regulator of the Na-K-2Cl cotransporter, a membrane protein involved in cell proliferation and survival, epithelial transport, and blood pressure control. The function of Aatyk3 is still unknown. Length = 269

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 295 ILGRGGFGKVYKGRLTD------GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLL 348
            LG G FGKV K            + VAVK LKE  +        +E  ++    H +++
Sbjct: 7   TLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVI 66

Query: 349 RLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +L G C      LL+  +   GS+ S LR
Sbjct: 67  KLYGACSQDGPLLLIVEYAKYGSLRSFLR 95

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 14/119 (11%)

Query: 295 ILGRGGFGKVYKGRLTDGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRL 350
           ILG G FG++ +G L   S     VA+  L+   +      F  E   +    H N++RL
Sbjct: 12  ILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRL 71

Query: 351 RGFCMTPTERLLVYPFMVNGSVASCLRG----------MFIVSGFPSFFSYLFFIAFVQ 399
            G        ++V  +M NG++ S LR           M ++ G  S   YL  + +V 
Sbjct: 72  EGVITRGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMGYVH 130

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 18/100 (18%)

Query: 94  NLQYLELYSNNISGKVPEELGNL----TNLVSLDLYLNNLNGPIPTTLGK----LSKLRF 145
            L+ L L  N + G   E L        +L  L+L  N +       L +       L  
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV 197

Query: 146 LRLNNNSL-------MGEIPRSLTNVNSLQVLDLSNNKLT 178
           L LNNN L       + E   SL    SL+VL+L +N LT
Sbjct: 198 LDLNNNGLTDEGASALAETLASLK---SLEVLNLGDNNLT 234

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 296 LGRGGFGKV--YKGRLTD---GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRL 350
           LG G FGKV  Y     +   G +VAVK LK E  Q     ++ E+ ++    H N+++ 
Sbjct: 12  LGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKY 71

Query: 351 RGFCMTPTER--LLVYPFMVNGSV 372
           +G C     +   L+  ++  GS+
Sbjct: 72  KGCCSEQGGKGLQLIMEYVPLGSL 95

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 296 LGRGGFGKVYKG---RLTDGSL---VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
           LG+G FG VY+G    +  G     VA+K + E  +    ++F  E  ++      +++R
Sbjct: 14  LGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVR 73

Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLRG 378
           L G   T    L+V   M  G + S LR 
Sbjct: 74  LLGVVSTGQPTLVVMELMAKGDLKSYLRS 102

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 29/87 (33%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 296 LGRGGFGKVYKGRLTDGSL----VAVKRLKEERTQGGELQFQTEVE-MISMAVHRNLLRL 350
           LG G FG V +G  +        VAVK LK ++       F  E   M S+  H NL+RL
Sbjct: 3   LGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLD-HENLIRL 61

Query: 351 RGFCMTPTERLLVYPFMVNGSVASCLR 377
            G  +T    ++V      GS+   LR
Sbjct: 62  YGVVLTHP-LMMVTELAPLGSLLDRLR 87

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 12/79 (15%)

Query: 294 NILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGG-------ELQFQTEVEMISMAVHR 345
             +G G +G VYK R L  G  VA+K+++   ++ G       E+    ++E      H 
Sbjct: 5   AEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFE---HP 61

Query: 346 NLLRLRGFCMTP-TERLLV 363
           N++RL   C  P T+R L 
Sbjct: 62  NIVRLLDVCHGPRTDRELK 80

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 296 LGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM 355
           LG G FG V  G+      VA+K +KE      E +F  E +++    H  L++L G C 
Sbjct: 12  LGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS--EDEFIEEAKVMMKLSHEKLVQLYGVCT 69

Query: 356 TPTERLLVYPFMVNGSVASCLRGM 379
                 +V  +M NG + + LR  
Sbjct: 70  KQRPIYIVTEYMSNGCLLNYLREH 93

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 12/63 (19%)

Query: 296 LGRGGFGKVYKGR-LTDGSLVAVKRLK------EERTQGGELQFQTEVEMISMAVHRNLL 348
           LG G FG VY  R    G LVA+K++K      EE     E++      +  +  H N++
Sbjct: 7   LGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKS-----LRKLNEHPNIV 61

Query: 349 RLR 351
           +L+
Sbjct: 62  KLK 64

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 7/84 (8%)

Query: 290 FSNRNILGRGGFGKVYKGR-LTDGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVH 344
           F    +LG G FG VYKG  + +G      VA+K L+E  +     +   E  +++   +
Sbjct: 9   FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDN 68

Query: 345 RNLLRLRGFCMTPTERLL--VYPF 366
            ++ RL G C+T T +L+  + PF
Sbjct: 69  PHVCRLLGICLTSTVQLITQLMPF 92

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 17/128 (13%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQL----TNLQYLELYSNNISG----KVPEELGNLTNLVS 121
           ++ ++ LG   L G     L +      +L+ L L +N I       + E L    NL  
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEV 197

Query: 122 LDLYLNNLN----GPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVN-----SLQVLDL 172
           LDL  N L       +  TL  L  L  L L +N+L      +L +       SL  L L
Sbjct: 198 LDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSL 257

Query: 173 SNNKLTGD 180
           S N +T D
Sbjct: 258 SCNDITDD 265

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 93  TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           TNL+ L+L +N I+  +P  L NL NL +LDL  N +
Sbjct: 1   TNLETLDLSNNQIT-DLPP-LSNLPNLETLDLSGNKI 35

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 296 LGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM 355
           LG G FG+V++G   + + VAVK LK       +  F  E +++    H  L++L   C 
Sbjct: 14  LGAGQFGEVWEGLWNNTTPVAVKTLKPGTMDPKD--FLAEAQIMKKLRHPKLIQLYAVCT 71

Query: 356 TPTERLLVYPFMVNGSVASCLRG 378
                 +V   M  GS+   L+G
Sbjct: 72  LEEPIYIVTELMKYGSLLEYLQG 94

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 296 LGRGGFGKVYKGRL-----TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRL 350
           LG G FGKV   R        G  VAVK LK E         + E+E++    H N+++ 
Sbjct: 12  LGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKY 71

Query: 351 RGFCMTPTER--LLVYPFMVNGSVASCL 376
           +G C         L+  F+ +GS+   L
Sbjct: 72  KGICTEDGGNGIKLIMEFLPSGSLKEYL 99

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 293 RNILGRGGFGKVYKG-RLTDGSLVAVKRLKEERTQGGEL-QFQTEVEMISMAVHRNLLRL 350
            N +G G FGKVY    L  G L+AVK ++ +      + +   E++++ +  H NL++ 
Sbjct: 5   GNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKY 64

Query: 351 RGFCMTPTERLLVYPFM---VNGSVASCLRG 378
            G       R  VY FM     G++   L  
Sbjct: 65  YG---VEVHREKVYIFMEYCSGGTLEELLEH 92

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 8/91 (8%)

Query: 296 LGRGGFGKVYK------GRLTDGSLVAVKRLKEERTQGGELQFQTEVE-MISMAVHRNLL 348
           LGRG FGKV +       +      VAVK LKE  T        TE++ +I +  H N++
Sbjct: 15  LGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVV 74

Query: 349 RLRGFCMTPTERLLV-YPFMVNGSVASCLRG 378
            L G C  P   L+V   +   G++++ LR 
Sbjct: 75  NLLGACTKPGGPLMVIVEYCKFGNLSNYLRS 105

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 38.8 bits (90), Expect = 0.003
 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 296 LGRGGFGKVYKGR--LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 353
           LG G +  VYKGR  LTD +LVA+K ++ E  +G       EV ++    H N++ L   
Sbjct: 14  LGEGTYATVYKGRSKLTD-NLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDI 72

Query: 354 CMTPTERLLVYPFM 367
             T     LV+ ++
Sbjct: 73  IHTEKSLTLVFEYL 86

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLTD-GSLVAVK--RLKEERTQGGELQFQTEVEMISMAVH 344
           D F     +G G +G+VYK R  D G LVA+K  RL  E+ +G  +    E++++    H
Sbjct: 7   DKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEK-EGFPITAIREIKILRQLNH 65

Query: 345 RNLLRLR 351
           RN++ L+
Sbjct: 66  RNIVNLK 72

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 39.3 bits (91), Expect = 0.004
 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 11/118 (9%)

Query: 95  LQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLM 154
           L+YL +Y N+I   +P  L   + +  L++  N+L   +P TL     L+ L    N+L 
Sbjct: 285 LRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETLP--PGLKTLEAGENALT 338

Query: 155 GEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPPPPLQ 212
             +P SL     LQVLD+S N++T  +P     ++ T +  + N L N P + P  LQ
Sbjct: 339 S-LPASLPP--ELQVLDVSKNQIT-VLPETLPPTI-TTLDVSRNALTNLPENLPAALQ 391

Length = 754

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 38.4 bits (89), Expect = 0.004
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 5/82 (6%)

Query: 296 LGRGGFGKVYKGRL-----TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRL 350
           LG   FGK+YKG L         LVA+K LK+        +FQ E  +++   H N++ L
Sbjct: 13  LGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCL 72

Query: 351 RGFCMTPTERLLVYPFMVNGSV 372
            G         +++ ++  G +
Sbjct: 73  LGVVTQEQPVCMLFEYLNQGDL 94

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 6/88 (6%)

Query: 295 ILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQ-----FQTEVEMISMAVHRNLL 348
            LG G F   Y+ R +  G+L+AVK++   R    E +      + E+ +++   H +++
Sbjct: 7   QLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHII 66

Query: 349 RLRGFCMTPTERLLVYPFMVNGSVASCL 376
           R+ G     +   L   +M  GSV+  L
Sbjct: 67  RMLGATCEDSHFNLFVEWMAGGSVSHLL 94

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 289 NFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           NF     LG G +  VYKGR  T G +VA+K +  +  +G       E+ ++    H N+
Sbjct: 1   NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENI 60

Query: 348 LRLRGFCMTPTERLLVYPFM 367
           +RL     T  + +LV+ +M
Sbjct: 61  VRLHDVIHTENKLMLVFEYM 80

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	419
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.9
PLN03150	623	hypothetical protein; Provisional	99.89
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.88
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.88
KOG3653	534	consensus Transforming growth factor beta/activin	99.87
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.87
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.87
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.86
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.86
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.84
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.83
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.83
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.83
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.83
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.83
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.82
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.8
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.79
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.78
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.78
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.78
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.78
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.77
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.76
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.76
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.76
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.76
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.76
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.75
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.75
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.75
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.75
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.75
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.74
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.74
KOG0198	313	consensus MEKK and related serine/threonine protei	99.74
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.74
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.74
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.74
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.74
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.74
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.73
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.73
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.73
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.73
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.73
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.73
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.73
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.73
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.73
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.73
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.73
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.73
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.73
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.73
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.73
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.73
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.73
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.73
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.73
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.72
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.72
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.72
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.72
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.72
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.72
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.72
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.72
KOG0578	550	consensus p21-activated serine/threonine protein k	99.72
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.72
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.72
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.72
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.72
PHA02988	283	hypothetical protein; Provisional	99.72
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.72
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.71
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.71
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.71
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.71
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.71
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.71
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.71
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.71
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.71
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.71
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.71
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.71
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.71
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.71
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.71
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.71
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.7
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.7
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.7
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.7
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.7
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.7
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.7
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.7
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.7
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.7
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.7
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.7
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.7
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.7
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.7
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.7
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.7
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.7
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.69
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.69
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.69
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.69
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.69
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.69
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.69
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.69
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.69
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.69
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.69
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.69
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.69
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.69
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.69
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.69
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.69
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.69
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.69
KOG0605	550	consensus NDR and related serine/threonine kinases	99.69
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.69
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.69
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.68
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.68
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.68
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.68
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.68
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.68
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.68
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.68
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.68
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.68
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.68
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.68
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.68
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.68
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.68
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.68
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.68
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.68
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.68
KOG0586	596	consensus Serine/threonine protein kinase [General	99.68
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.68
KOG0610	459	consensus Putative serine/threonine protein kinase	99.68
KOG0584	632	consensus Serine/threonine protein kinase [General	99.68
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.68
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.68
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.68
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.67
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.67
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.67
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.67
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.67
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.67
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.67
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.67
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.67
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.67
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.67
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.67
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.67
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.67
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.67
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.67
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.67
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.67
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.67
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.67
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.67
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.67
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.67
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.67
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.67
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.67
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.67
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.66
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.66
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.66
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.66
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.66
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.66
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.66
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.66
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.66
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.66
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.66
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.66
PHA03212	391	serine/threonine kinase US3; Provisional	99.66
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.66
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.66
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.66
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.65
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.65
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.65
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.65
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.65
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.65
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.65
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.65
PTZ00267	478	NIMA-related protein kinase; Provisional	99.65
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.65
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.65
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.65
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.65
KOG0589	426	consensus Serine/threonine protein kinase [General	99.65
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.65
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.65
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.65
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.65
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.65
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.65
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.65
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.65
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.65
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.65
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.65
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.65
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.65
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.64
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.64
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.64
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.64
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.64
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.64
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.64
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.64
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.64
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.64
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.64
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.64
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.64
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.64
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.64
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.64
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.64
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.64
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.64
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.63
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.63
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.63
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.63
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.63
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.63
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.63
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.63
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.63
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.63
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.63
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.63
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.63
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.63
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.63
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.63
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.63
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.62
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.62
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.62
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.62
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.62
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.62
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.62
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.62
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.62
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.62
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.62
PTZ00283	496	serine/threonine protein kinase; Provisional	99.62
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.62
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.62
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.61
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.61
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.61
PHA03209	357	serine/threonine kinase US3; Provisional	99.61
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.61
PHA03211	461	serine/threonine kinase US3; Provisional	99.61
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.61
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.61
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.61
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.61
PTZ00036	440	glycogen synthase kinase; Provisional	99.61
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.61
PLN00009	294	cyclin-dependent kinase A; Provisional	99.61
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.61
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.6
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.6
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.6
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.6
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.6
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.6
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.6
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.6
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.6
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.59
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.59
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.58
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.58
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.58
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.58
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.58
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.58
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.58
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.58
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.58
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.58
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.58
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.58
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.58
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.58
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.57
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.57
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.57
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.57
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.57
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.57
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.57
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.57
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.57
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.57
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.56
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.56
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.56
PHA03207	392	serine/threonine kinase US3; Provisional	99.56
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.56
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.56
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.56
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.56
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.56
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.56
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.55
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.55
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.55
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.55
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.55
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.55
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.55
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.55
PRK09188	365	serine/threonine protein kinase; Provisional	99.54
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.54
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.54
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.54
PLN03150	623	hypothetical protein; Provisional	99.54
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.53
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.53
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.53
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.53
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.52
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.52
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.52
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.52
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.52
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.52
PTZ00284	467	protein kinase; Provisional	99.51
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.51
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.51
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.51
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.51
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.5
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.5
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.49
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.49
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.49
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.48
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.47
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.47
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.45
PRK10345	210	hypothetical protein; Provisional	99.45
PHA03210	501	serine/threonine kinase US3; Provisional	99.45
KOG1152	772	consensus Signal transduction serine/threonine kin	99.45
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.44
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.44
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.43
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.42
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.42
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.41
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.41
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.4
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.39
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.39
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.38
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.35
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.35
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.34
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.33
PRK14879	211	serine/threonine protein kinase; Provisional	99.32
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.28
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.28
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.27
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.25
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.25
PHA02882	294	putative serine/threonine kinase; Provisional	99.24
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.24
smart00090	237	RIO RIO-like kinase.	99.23
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.23
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.22
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.22
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.21
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.2
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.17
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.16
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.15
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.15
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.14
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.14
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.14
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.13
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.11
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.09
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.09
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.08
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.08
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.06
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.03
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.98
PRK12274	218	serine/threonine protein kinase; Provisional	98.98
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	98.97
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	98.96
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.96
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.94
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	98.92
COG0515	384	SPS1 Serine/threonine protein kinase [General func	98.92
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.91
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.89
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.88
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	98.87
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.86
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.85
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	98.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.8
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.78
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.75
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.72
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.72
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.71
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	98.69
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.66
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	98.66
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.61
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.59
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	98.52
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.48
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.45
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.44
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.38
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.37
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.35
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.28
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.22
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.16
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.14
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.11
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.11
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.08
KOG1266	458	consensus Protein kinase [Signal transduction mech	98.06
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.0
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.0
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	97.98
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.96
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	97.95
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.87
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	97.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.82
PLN00181	793	protein SPA1-RELATED; Provisional	97.76
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	97.75
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	97.7
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.66
KOG1243	690	consensus Protein kinase [General function predict	97.66
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	97.53
PRK15386	426	type III secretion protein GogB; Provisional	97.25
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.2
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.18
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.13
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	97.13
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	97.1
PLN02876	822	acyl-CoA dehydrogenase	97.02
PRK15386	426	type III secretion protein GogB; Provisional	96.96
KOG3087	229	consensus Serine/threonine protein kinase [General	96.83
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.83
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	96.78
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.76
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.75
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	96.68
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.65
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.62
KOG0473	326	consensus Leucine-rich repeat protein [Function un	96.62

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.3e-42  Score=375.92  Aligned_cols=328  Identities=26%  Similarity=0.421  Sum_probs=243.4

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|+|++|+++|.+|..+.++++|+.|+|++|.++|.+|..+.++++|++|+|++|.++|.+|..++++++|+.|||
T Consensus       475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  554 (968)
T PLN00113        475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL  554 (968)
T ss_pred             ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence            46888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPPPPLQPTPPGASSGNSATGAI  228 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  228 (419)
                      ++|+++|.+|..+.++++|+.|++++|+++|.+|..+.+..+....+.+|+..+.+.+... .++..  ..........+
T Consensus       555 s~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~-~~~c~--~~~~~~~~~~~  631 (968)
T PLN00113        555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSG-LPPCK--RVRKTPSWWFY  631 (968)
T ss_pred             CCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccC-CCCCc--cccccceeeee
Confidence            9999999999999999999999999999999999888887777888888887665322110 00010  01111111222


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhcCCCCC-CCCCCCCCCccc---ccCccccccHHHHHHHhhCCCCCCeeCcCCceEE
Q 014778          229 AGGVAAGAALLFAAPAIALAYWRKRKPEDH-FFDVPAEEDPEV---HLGQLKRFSLRELQVATDNFSNRNILGRGGFGKV  304 (419)
Q Consensus       229 v~~v~~g~~~ll~~~~i~~~~~r~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~lG~G~fg~V  304 (419)
                      + ++++++++++++++++++++|+++..+. ...... ...+.   .......++++++   ...+...++||+|+||.|
T Consensus       632 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ig~G~~g~V  706 (968)
T PLN00113        632 I-TCTLGAFLVLALVAFGFVFIRGRNNLELKRVENED-GTWELQFFDSKVSKSITINDI---LSSLKEENVISRGKKGAS  706 (968)
T ss_pred             h-hHHHHHHHHHHHHHHHHHHHHhhhccccccccccc-ccccccccccccchhhhHHHH---HhhCCcccEEccCCCeeE
Confidence            2 2222333333333333333333322111 000000 00000   0001122344444   345778899999999999


Q ss_pred             EEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCChhhhhcCCcccc
Q 014778          305 YKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVS  383 (419)
Q Consensus       305 y~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~~  383 (419)
                      |+|+. .+|..||||+++....     ....|++.+++++|||||+++|+|.+++..++|||||++|+|.++++      
T Consensus       707 y~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~------  775 (968)
T PLN00113        707 YKGKSIKNGMQFVVKEINDVNS-----IPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLR------  775 (968)
T ss_pred             EEEEECCCCcEEEEEEccCCcc-----ccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHh------
Confidence            99997 5789999999854321     12356889999999999999999999999999999999999999996      


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          384 GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       384 ~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                          .++|.++.+++.|||+||+|||+.+.|+|+||
T Consensus       776 ----~l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~  807 (968)
T PLN00113        776 ----NLSWERRRKIAIGIAKALRFLHCRCSPAVVVG  807 (968)
T ss_pred             ----cCCHHHHHHHHHHHHHHHHHhccCCCCCeecC
Confidence                36788899999999999999998888899998

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=3.5e-31  Score=255.00  Aligned_cols=140  Identities=41%  Similarity=0.672  Sum_probs=128.4

Q ss_pred             ccccccHHHHHHHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEE
Q 014778          274 QLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF  353 (419)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~  353 (419)
                      ....|+++++..||++|+..+.||+|+||.||+|.+++|+.||||++....... .++|.+|++++++++|||+|+|+||
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~-~~eF~~Ei~~ls~l~H~Nlv~LlGy  139 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQG-EREFLNEVEILSRLRHPNLVKLLGY  139 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcc-hhHHHHHHHHHhcCCCcCcccEEEE
Confidence            456799999999999999999999999999999999999999999986544332 5679999999999999999999999


Q ss_pred             EecCCc-eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          354 CMTPTE-RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       354 ~~~~~~-~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |.+.++ .+||||||+||+|.++|+.....     .++|.++++||.++|+||+|||..+.|+||||
T Consensus       140 C~e~~~~~~LVYEym~nGsL~d~L~~~~~~-----~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHr  201 (361)
T KOG1187|consen  140 CLEGGEHRLLVYEYMPNGSLEDHLHGKKGE-----PLDWETRLKIALGAARGLAYLHEGCPPPIIHR  201 (361)
T ss_pred             EecCCceEEEEEEccCCCCHHHHhCCCCCC-----CCCHHHHHHHHHHHHHHHHHHccCCCCCEecC
Confidence            999984 99999999999999999986532     57999999999999999999999999999998

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=1.1e-24  Score=238.10  Aligned_cols=195  Identities=32%  Similarity=0.584  Sum_probs=136.8

Q ss_pred             Ccc--hhHHHHHHHHHHHHHHhhhccCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcceeEeCCCCCEEEEEcCC
Q 014778            1 MGK--LERVVWAFLVSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGN   78 (419)
Q Consensus         1 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c~w~~v~c~~~~~~~~l~L~~   78 (419)
                      |+|  -+-|.+++ +.+.++........+.|..||++||+.+.+|.+.+.+|+.. .++|.|.||+|+..++|+.|||++
T Consensus         1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~-~~~c~w~gv~c~~~~~v~~L~L~~   78 (968)
T PLN00113          1 MAKKGPQHCPYLI-FMLFFLFLNFSMLHAEELELLLSFKSSINDPLKYLSNWNSS-ADVCLWQGITCNNSSRVVSIDLSG   78 (968)
T ss_pred             CCCCCCCCCChHH-HHHHHHHHHccCCCHHHHHHHHHHHHhCCCCcccCCCCCCC-CCCCcCcceecCCCCcEEEEEecC
Confidence            455  23344533 33334444455557789999999999998888888999754 689999999998778999999999


Q ss_pred             CCccccchhhhhCCCCCCEEEcccCcccccCCcccc-CCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccC
Q 014778           79 ANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELG-NLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEI  157 (419)
Q Consensus        79 ~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~-~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~  157 (419)
                      |+++|.++..+..+++|+.|+|++|.++|.+|..+. .+++|++|+|++|+++|.+|.  +.+++|++|+|++|.+++.+
T Consensus        79 ~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~  156 (968)
T PLN00113         79 KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEI  156 (968)
T ss_pred             CCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccC
Confidence            999999999999999999999999999999998765 777777777777777666554  33455555555555555555


Q ss_pred             CccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCC
Q 014778          158 PRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQ  199 (419)
Q Consensus       158 p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~  199 (419)
                      |..++++++|++|++++|.+++.+|. ...+.+++.+++++|.
T Consensus       157 p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~  199 (968)
T PLN00113        157 PNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ  199 (968)
T ss_pred             ChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC
Confidence            55555555555555555555554442 2334444444444444

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.90  E-value=8e-24  Score=196.34  Aligned_cols=123  Identities=21%  Similarity=0.309  Sum_probs=109.9

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ..+|...+.||+|+||+||+|+++ ++..||||++.... .....+....|+++|+.++|||||+++.++..++..||||
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVM   88 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVM   88 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEE
Confidence            356777788999999999999975 68999999996543 2223456789999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||.+|||.+|++.++       .+++..+..++.|+|.||++||++   +||||
T Consensus        89 EyC~gGDLs~yi~~~~-------~l~e~t~r~Fm~QLA~alq~L~~~---~IiHR  133 (429)
T KOG0595|consen   89 EYCNGGDLSDYIRRRG-------RLPEATARHFMQQLASALQFLHEN---NIIHR  133 (429)
T ss_pred             EeCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            9999999999999886       688999999999999999999999   99998

>PLN03150 hypothetical protein; Provisional

Probab=99.89  E-value=8.2e-23  Score=210.92  Aligned_cols=151  Identities=34%  Similarity=0.583  Sum_probs=129.5

Q ss_pred             ccCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC-----CcceeEeCCC-----CCEEEEEcCCCCccccchhhhhCC
Q 014778           23 RVASNAEGDALNALKTNLADPNNVLQSWDATLVNPC-----TWFHVTCNSE-----NSVTRVDLGNANLSGQLVSQLGQL   92 (419)
Q Consensus        23 ~~~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c-----~w~~v~c~~~-----~~~~~l~L~~~~l~g~~~~~~~~l   92 (419)
                      ..+.+.|+.||+++|+.+.++..  .+|+   .+||     .|.||.|...     ..++.|+|++|+++|.+|+.++.+
T Consensus       367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~---g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L  441 (623)
T PLN03150        367 SKTLLEEVSALQTLKSSLGLPLR--FGWN---GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKL  441 (623)
T ss_pred             cccCchHHHHHHHHHHhcCCccc--CCCC---CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCC
Confidence            34567899999999999976642  4796   3677     6999999622     248999999999999999999999


Q ss_pred             CCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCC-CCCcEEE
Q 014778           93 TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNV-NSLQVLD  171 (419)
Q Consensus        93 ~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l-~~L~~l~  171 (419)
                      ++|+.|+|++|.++|.+|+.++.+++|+.|||++|+++|.+|..++++++|+.|+|++|+++|.+|..++.+ .++..++
T Consensus       442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~  521 (623)
T PLN03150        442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN  521 (623)
T ss_pred             CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE
Confidence            999999999999999999999999999999999999999999999999999999999999999999988764 3556666


Q ss_pred             cccCcCC
Q 014778          172 LSNNKLT  178 (419)
Q Consensus       172 l~~N~l~  178 (419)
                      +++|...
T Consensus       522 ~~~N~~l  528 (623)
T PLN03150        522 FTDNAGL  528 (623)
T ss_pred             ecCCccc
Confidence            6666543

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.88  E-value=1.6e-22  Score=193.90  Aligned_cols=120  Identities=22%  Similarity=0.399  Sum_probs=102.8

Q ss_pred             CCCeeCcCCceEEEEEEeCCCCEEEEEEccccccc-cCHHHHHHHHHHHhcCCCCCCcceeEEEecCC-ceeEEeccCCC
Q 014778          292 NRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTPT-ERLLVYPFMVN  369 (419)
Q Consensus       292 ~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-~~~lv~e~~~~  369 (419)
                      ..+.+|+|+||+||+|.++....||||++...... ...++|.+|+.+|.+++|||||+++|+|.++. ..++|||||++
T Consensus        45 ~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~  124 (362)
T KOG0192|consen   45 IEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPG  124 (362)
T ss_pred             hhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCC
Confidence            34569999999999999974444999999643321 12568999999999999999999999999987 79999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccc-eecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSI-LLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~-IiHR  419 (419)
                      |+|.+++++..     ...+++..++.+|.|||+||+|||++   + ||||
T Consensus       125 GsL~~~l~~~~-----~~~l~~~~~l~~aldiArGm~YLH~~---~~iIHr  167 (362)
T KOG0192|consen  125 GSLSVLLHKKR-----KRKLPLKVRLRIALDIARGMEYLHSE---GPIIHR  167 (362)
T ss_pred             CcHHHHHhhcc-----cCCCCHHHHHHHHHHHHHHHHHHhcC---CCeeec
Confidence            99999998841     12799999999999999999999988   5 9998

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.88  E-value=1.3e-22  Score=201.07  Aligned_cols=122  Identities=24%  Similarity=0.392  Sum_probs=111.4

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC----CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      .....++||.|.||.||+|.++    ....||||.++.......+.+|..|..+|++++||||++|.|+.....+.+||+
T Consensus       630 ~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvMIiT  709 (996)
T KOG0196|consen  630 CVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVMIIT  709 (996)
T ss_pred             heEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeEEEh
Confidence            3455689999999999999984    245899999988777777889999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+||+|+.||+.+.+      .|++.+.+.+.++||.||.||-++   +-|||
T Consensus       710 EyMENGsLDsFLR~~DG------qftviQLVgMLrGIAsGMkYLsdm---~YVHR  755 (996)
T KOG0196|consen  710 EYMENGSLDSFLRQNDG------QFTVIQLVGMLRGIASGMKYLSDM---NYVHR  755 (996)
T ss_pred             hhhhCCcHHHHHhhcCC------ceEeehHHHHHHHHHHHhHHHhhc---Cchhh
Confidence            99999999999998753      599999999999999999999999   99998

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.87  E-value=1.1e-21  Score=184.99  Aligned_cols=118  Identities=28%  Similarity=0.358  Sum_probs=102.5

Q ss_pred             CCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHh--cCCCCCCcceeEEEecCC----ceeE
Q 014778          289 NFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMIS--MAVHRNLLRLRGFCMTPT----ERLL  362 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~--~l~H~niv~l~g~~~~~~----~~~l  362 (419)
                      .....++||+|+||.||||.+. ++.||||++...    ..+.|.+|-++.+  .++|+||++++++-....    +.+|
T Consensus       211 pl~l~eli~~Grfg~V~KaqL~-~~~VAVKifp~~----~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywL  285 (534)
T KOG3653|consen  211 PLQLLELIGRGRFGCVWKAQLD-NRLVAVKIFPEQ----EKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWL  285 (534)
T ss_pred             chhhHHHhhcCccceeehhhcc-CceeEEEecCHH----HHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeE
Confidence            3445578999999999999995 589999999543    3457888887766  579999999999887655    7899


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhc------cccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYS------CVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~------~~p~IiHR  419 (419)
                      |+||.++|||.+||..+        .++|.+..+++..+++||+|||+.      .||+|+||
T Consensus       286 Vt~fh~kGsL~dyL~~n--------tisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHR  340 (534)
T KOG3653|consen  286 VTEFHPKGSLCDYLKAN--------TISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHR  340 (534)
T ss_pred             EeeeccCCcHHHHHHhc--------cccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccc
Confidence            99999999999999987        589999999999999999999965      69999998

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.5e-22  Score=203.67  Aligned_cols=133  Identities=24%  Similarity=0.417  Sum_probs=114.1

Q ss_pred             HHHhhCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecC
Q 014778          284 QVATDNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP  357 (419)
Q Consensus       284 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~  357 (419)
                      +..+.+....+.||+|+||+||+|+..      +.+.||||.+++....+..++|.+|+++|+.++|||||+|+|+|..+
T Consensus       482 ~i~r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~  561 (774)
T KOG1026|consen  482 EIPRSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREG  561 (774)
T ss_pred             EechhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccC
Confidence            344556666788999999999999953      34689999998877766788999999999999999999999999999


Q ss_pred             CceeEEeccCCCCChhhhhcCCccc-------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIV-------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~-------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++.++|+|||.+|||.+||+.....       .+.+..++..+.+.||.|||.||+||-++   ..|||
T Consensus       562 ~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~---~FVHR  627 (774)
T KOG1026|consen  562 DPLCMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSH---HFVHR  627 (774)
T ss_pred             CeeEEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---ccccc
Confidence            9999999999999999999854311       11244588899999999999999999999   99998

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.87  E-value=9.6e-23  Score=195.66  Aligned_cols=121  Identities=22%  Similarity=0.378  Sum_probs=107.0

Q ss_pred             CCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCC
Q 014778          289 NFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMV  368 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~  368 (419)
                      .+...+.||+|.||.||.|.++....||||.++..  ....++|.+|+.+|.+++|+|||+++|+|..+++.+||||||+
T Consensus       207 ~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~--~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~  284 (468)
T KOG0197|consen  207 ELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEG--SMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMP  284 (468)
T ss_pred             HHHHHHHhcCCccceEEEEEEcCCCcccceEEecc--ccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecc
Confidence            33445779999999999999987779999999754  2345689999999999999999999999999999999999999


Q ss_pred             CCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          369 NGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       369 ~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|+|.+||+....     ..+...+.+.+|.|||+||+||+++   ++|||
T Consensus       285 ~GsLl~yLr~~~~-----~~l~~~~Ll~~a~qIaeGM~YLes~---~~IHR  327 (468)
T KOG0197|consen  285 KGSLLDYLRTREG-----GLLNLPQLLDFAAQIAEGMAYLESK---NYIHR  327 (468)
T ss_pred             cCcHHHHhhhcCC-----CccchHHHHHHHHHHHHHHHHHHhC---Cccch
Confidence            9999999997321     2678889999999999999999999   99998

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.86  E-value=1.8e-21  Score=187.34  Aligned_cols=127  Identities=18%  Similarity=0.299  Sum_probs=112.2

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      .+.+.+...+.||+|.||.|..++...+..||||.++........++|.+|+++|++++|||||+++|+|..+++.++|+
T Consensus       535 fPRs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~  614 (807)
T KOG1094|consen  535 FPRSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMIT  614 (807)
T ss_pred             cchhheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHH
Confidence            34555666789999999999999998889999999998877777889999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||++|+|.+|+..+....     ..-...++||.|||+||+||.+-   ++|||
T Consensus       615 EYmEnGDLnqFl~aheapt-----~~t~~~vsi~tqiasgmaYLes~---nfVHr  661 (807)
T KOG1094|consen  615 EYMENGDLNQFLSAHELPT-----AETAPGVSICTQIASGMAYLESL---NFVHR  661 (807)
T ss_pred             HHHhcCcHHHHHHhccCcc-----cccchhHHHHHHHHHHHHHHHhh---chhhc
Confidence            9999999999998764321     33445677999999999999998   99998

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.86  E-value=7.3e-22  Score=192.30  Aligned_cols=130  Identities=24%  Similarity=0.361  Sum_probs=111.3

Q ss_pred             HHHHHHhhCCCCCCeeCcCCceEEEEEEeC--CC--CE-EEEEEccc--cccccCHHHHHHHHHHHhcCCCCCCcceeEE
Q 014778          281 RELQVATDNFSNRNILGRGGFGKVYKGRLT--DG--SL-VAVKRLKE--ERTQGGELQFQTEVEMISMAVHRNLLRLRGF  353 (419)
Q Consensus       281 ~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~--~g--~~-vAvK~l~~--~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~  353 (419)
                      +.++...++....+.||+|+||.||+|.+.  ++  .. ||||..+.  .......++|.+|.++|++++|||||+++|+
T Consensus       150 ~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGV  229 (474)
T KOG0194|consen  150 QKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGV  229 (474)
T ss_pred             cccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence            344445556666689999999999999974  23  23 89999864  2334456789999999999999999999999


Q ss_pred             EecCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          354 CMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       354 ~~~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +....+.|+|||+|+||+|.++|+....      .++..+.+.++.|+|.||+|||++   ++|||
T Consensus       230 a~~~~Pl~ivmEl~~gGsL~~~L~k~~~------~v~~~ek~~~~~~AA~Gl~YLh~k---~~IHR  286 (474)
T KOG0194|consen  230 AVLEEPLMLVMELCNGGSLDDYLKKNKK------SLPTLEKLRFCYDAARGLEYLHSK---NCIHR  286 (474)
T ss_pred             EcCCCccEEEEEecCCCcHHHHHHhCCC------CCCHHHHHHHHHHHHhHHHHHHHC---CCcch
Confidence            9999999999999999999999998753      588899999999999999999999   99998

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.84  E-value=1.6e-20  Score=182.57  Aligned_cols=122  Identities=19%  Similarity=0.314  Sum_probs=110.6

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ..|...++||+|+|+.||+++. .+|..||+|++....  .....+...+||++-++++|||||++++|+.+.+..|||.
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            4578889999999999999996 789999999995432  2334567899999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|++|+|..++++..       .+++.++..+..||+.||.|||+.   +||||
T Consensus        98 ELC~~~sL~el~Krrk-------~ltEpEary~l~QIv~GlkYLH~~---~IiHR  142 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRRK-------PLTEPEARYFLRQIVEGLKYLHSL---GIIHR  142 (592)
T ss_pred             EecCCccHHHHHHhcC-------CCCcHHHHHHHHHHHHHHHHHHhc---Cceec
Confidence            9999999999998665       799999999999999999999999   99998

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.83  E-value=7.9e-21  Score=197.81  Aligned_cols=130  Identities=28%  Similarity=0.430  Sum_probs=116.3

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC--CCC----EEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCce
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT--DGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~--~g~----~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  360 (419)
                      .+..+..+.||+|.||.||+|.+.  +|.    .||||.++...+.+...+|.+|..+|++++|||||+++|+|.+....
T Consensus       691 ~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~  770 (1025)
T KOG1095|consen  691 RKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPP  770 (1025)
T ss_pred             hhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCc
Confidence            445566789999999999999974  343    59999998777777788999999999999999999999999999999


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++++|||++|+|..||+..+.....+..++..+.+.+|.|||+|++||+++   +.|||
T Consensus       771 ~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~---~fvHR  826 (1025)
T KOG1095|consen  771 LILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESK---HFVHR  826 (1025)
T ss_pred             EEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhC---CCcCc
Confidence            999999999999999998765555567899999999999999999999999   99998

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1.3e-20  Score=174.95  Aligned_cols=122  Identities=19%  Similarity=0.347  Sum_probs=104.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccccc------CHHHHHHHHHHHhcCCCCCCcceeEEEecCCce
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQG------GELQFQTEVEMISMAVHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~------~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  360 (419)
                      +.|...+.+|+|+||.|-.|.- ++|+.||||.+.......      ......+|+++|.+++|||||++++++..+++.
T Consensus       172 d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~  251 (475)
T KOG0615|consen  172 DYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSS  251 (475)
T ss_pred             ceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCce
Confidence            3456678999999999999995 589999999996443222      122357999999999999999999999999999


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+|||++|+|.+++-.+.       .+.+.....++.|++.|+.|||++   +|+||
T Consensus       252 YmVlE~v~GGeLfd~vv~nk-------~l~ed~~K~~f~Qll~avkYLH~~---GI~HR  300 (475)
T KOG0615|consen  252 YMVLEYVEGGELFDKVVANK-------YLREDLGKLLFKQLLTAVKYLHSQ---GIIHR  300 (475)
T ss_pred             EEEEEEecCccHHHHHHhcc-------ccccchhHHHHHHHHHHHHHHHHc---Ccccc
Confidence            99999999999999998776       466666677899999999999999   99998

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=1.2e-20  Score=179.37  Aligned_cols=121  Identities=21%  Similarity=0.426  Sum_probs=105.5

Q ss_pred             CCCCCCeeCcCCceEEEEEE-eCCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecC--CceeEEe
Q 014778          289 NFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTP--TERLLVY  364 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv~  364 (419)
                      .|...+.||+|.||.||||+ ..+|+.||+|+++-+.. .+...-..+||.+|++++||||++|.+...+.  ...|||+
T Consensus       118 ~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlVF  197 (560)
T KOG0600|consen  118 SFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLVF  197 (560)
T ss_pred             HHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEEE
Confidence            45556889999999999999 46899999999975542 33345668999999999999999999999886  6899999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||++ ||.-++.....      .|++.++..++.|++.||+|+|++   +|+||
T Consensus       198 eYMdh-DL~GLl~~p~v------kft~~qIKc~mkQLl~Gl~~cH~~---gvlHR  242 (560)
T KOG0600|consen  198 EYMDH-DLSGLLSSPGV------KFTEPQIKCYMKQLLEGLEYCHSR---GVLHR  242 (560)
T ss_pred             ecccc-hhhhhhcCCCc------ccChHHHHHHHHHHHHHHHHHhhc---Ceeec
Confidence            99998 99998887543      799999999999999999999999   99998

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.83  E-value=3.8e-20  Score=173.45  Aligned_cols=119  Identities=23%  Similarity=0.287  Sum_probs=103.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhc--CCCCCCcceeEEEecC----Ccee
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISM--AVHRNLLRLRGFCMTP----TERL  361 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~--l~H~niv~l~g~~~~~----~~~~  361 (419)
                      ......+.||+|.||.||+|.++ |..||||.+..    .+++.+.+|.++...  +||+||+.+++.-..+    .+.|
T Consensus       211 rqI~L~e~IGkGRyGEVwrG~wr-Ge~VAVKiF~s----rdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLw  285 (513)
T KOG2052|consen  211 RQIVLQEIIGKGRFGEVWRGRWR-GEDVAVKIFSS----RDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLW  285 (513)
T ss_pred             heeEEEEEecCccccceeecccc-CCceEEEEecc----cchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEE
Confidence            35667789999999999999996 88999999943    346689999999886  6999999999876554    3579


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhc-----cccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYS-----CVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~-----~~p~IiHR  419 (419)
                      ||+||.|+|||+|||.+.        .++....++++..+|+||++||-.     -||.|.||
T Consensus       286 LvTdYHe~GSL~DyL~r~--------tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHR  340 (513)
T KOG2052|consen  286 LVTDYHEHGSLYDYLNRN--------TVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHR  340 (513)
T ss_pred             EeeecccCCcHHHHHhhc--------cCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhcc
Confidence            999999999999999985        588888999999999999999954     59999998

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.83  E-value=2.7e-20  Score=171.46  Aligned_cols=118  Identities=18%  Similarity=0.242  Sum_probs=105.4

Q ss_pred             CCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC-ceeEEeccCCC
Q 014778          292 NRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT-ERLLVYPFMVN  369 (419)
Q Consensus       292 ~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-~~~lv~e~~~~  369 (419)
                      ....||+|..|+|||+.++ +++.+|+|.+.......-.++..+|++++.+++||+||+++|.|..+. +..++||||.+
T Consensus        83 ~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEYMDg  162 (364)
T KOG0581|consen   83 RLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEYMDG  162 (364)
T ss_pred             hhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhhcCC
Confidence            3478999999999999974 789999999954444444678999999999999999999999999988 59999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhh-ccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKY-SCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~-~~~p~IiHR  419 (419)
                      |||++++...+       ++++...-+++.+|++||.|||+ +   +||||
T Consensus       163 GSLd~~~k~~g-------~i~E~~L~~ia~~VL~GL~YLh~~~---~IIHR  203 (364)
T KOG0581|consen  163 GSLDDILKRVG-------RIPEPVLGKIARAVLRGLSYLHEER---KIIHR  203 (364)
T ss_pred             CCHHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHhhcc---Ceeec
Confidence            99999998764       68999999999999999999996 5   89998

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.82  E-value=9.2e-21  Score=183.67  Aligned_cols=130  Identities=25%  Similarity=0.381  Sum_probs=114.0

Q ss_pred             ccHHHHHHHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccc-cCHHHHHHHHHHHhcCCCCCCcceeEEEec
Q 014778          278 FSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMT  356 (419)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~  356 (419)
                      .+.+++++..+.+...+.||+|.||+||||.+. | .||||.+...... ...+.|.+|+.++++.||.||+-+.|||..
T Consensus       382 ~s~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~wh-G-dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~  459 (678)
T KOG0193|consen  382 DSLEEWEIPPEEVLLGERIGSGSFGTVYRGRWH-G-DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMN  459 (678)
T ss_pred             ccccccccCHHHhhccceeccccccceeecccc-c-ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcC
Confidence            344677777788888899999999999999985 3 5999999754432 235689999999999999999999999999


Q ss_pred             CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          357 PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       357 ~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++. +||+.+|++-+|+.+||-.+.      .|+..+.+.||.|||+||.|||.+   +||||
T Consensus       460 p~~-AIiTqwCeGsSLY~hlHv~et------kfdm~~~idIAqQiaqGM~YLHAK---~IIHr  512 (678)
T KOG0193|consen  460 PPL-AIITQWCEGSSLYTHLHVQET------KFDMNTTIDIAQQIAQGMDYLHAK---NIIHR  512 (678)
T ss_pred             Cce-eeeehhccCchhhhhccchhh------hhhHHHHHHHHHHHHHhhhhhhhh---hhhhh
Confidence            887 999999999999999997653      688899999999999999999999   99998

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.80  E-value=6.8e-20  Score=182.58  Aligned_cols=119  Identities=27%  Similarity=0.384  Sum_probs=104.0

Q ss_pred             CCCCeeCcCCceEEEEEEe-CCC----CEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          291 SNRNILGRGGFGKVYKGRL-TDG----SLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       291 ~~~~~lG~G~fg~Vy~~~~-~~g----~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      ....+||+|+||+||||.+ +.|    .+||+|++..........++..|+-.|++++|||+++|+|+|..+. ..||++
T Consensus       699 kk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvtq  777 (1177)
T KOG1025|consen  699 KKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVTQ  777 (1177)
T ss_pred             hhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHHH
Confidence            3458999999999999996 444    4799999976666666789999999999999999999999998876 889999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||.|+|.+|++..+.      .+-..+.+.++.|||+||.|||++   +.+||
T Consensus       778 ~mP~G~LlDyvr~hr~------~igsq~lLnw~~QIAkgM~YLe~q---rlVHr  822 (1177)
T KOG1025|consen  778 LMPLGCLLDYVREHRD------NIGSQDLLNWCYQIAKGMKYLEEQ---RLVHR  822 (1177)
T ss_pred             hcccchHHHHHHHhhc------cccHHHHHHHHHHHHHHHHHHHhc---chhhh
Confidence            9999999999998764      466667778899999999999999   99998

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.79  E-value=6.8e-19  Score=164.01  Aligned_cols=123  Identities=21%  Similarity=0.294  Sum_probs=106.8

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC----CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      ++|...+.||+|+||.||+|.+.    .+..||+|.++..........|.+|+..+.+++||||++++|++...+..++|
T Consensus         5 ~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   84 (266)
T cd05064           5 KSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIV   84 (266)
T ss_pred             HHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEE
Confidence            45777899999999999999863    35689999997543333346799999999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.+++.....      .+++.+++.++.|++.||+|||+.   +|+||
T Consensus        85 ~e~~~~~~L~~~l~~~~~------~l~~~~~~~~~~~i~~al~~lH~~---~iiH~  131 (266)
T cd05064          85 TEYMSNGALDSFLRKHEG------QLVAGQLMGMLPGLASGMKYLSEM---GYVHK  131 (266)
T ss_pred             EEeCCCCcHHHHHHhCCC------CCCHHHHHHHHHHHHHHHHHHHHC---CEeec
Confidence            999999999999976431      578889999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=1.4e-19  Score=157.21  Aligned_cols=125  Identities=25%  Similarity=0.353  Sum_probs=108.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      .++|...+.+|+|.||.||.|+.+ ++-.||+|++....  ..+-+.++.+|+++-+.++||||++++||+.+....||+
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLi  100 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLI  100 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEE
Confidence            456788899999999999999975 67799999995332  233467899999999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||.+.|++...|+..+..     .+++.....++.|+|.|+.|+|..   +||||
T Consensus       101 lEya~~gel~k~L~~~~~~-----~f~e~~~a~Yi~q~A~Al~y~h~k---~VIhR  148 (281)
T KOG0580|consen  101 LEYAPRGELYKDLQEGRMK-----RFDEQRAATYIKQLANALLYCHLK---RVIHR  148 (281)
T ss_pred             EEecCCchHHHHHHhcccc-----cccccchhHHHHHHHHHHHHhccC---CcccC
Confidence            9999999999999954421     577778888999999999999988   99998

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.78  E-value=4.4e-19  Score=156.23  Aligned_cols=121  Identities=21%  Similarity=0.365  Sum_probs=106.2

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccC-HHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGG-ELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~-~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      .|...+.+|+|.||.||+|+. .+|+.||||+++-....++ .....+|++.|+.++|+||+.++.++...+..-||+||
T Consensus         3 rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfEf   82 (318)
T KOG0659|consen    3 RYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFEF   82 (318)
T ss_pred             hhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEEe
Confidence            455668899999999999995 6899999999975433333 45789999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+. +|+..+++...      .++..+...++.++++|++|+|++   .|+||
T Consensus        83 m~t-dLe~vIkd~~i------~l~pa~iK~y~~m~LkGl~y~H~~---~IlHR  125 (318)
T KOG0659|consen   83 MPT-DLEVVIKDKNI------ILSPADIKSYMLMTLKGLAYCHSK---WILHR  125 (318)
T ss_pred             ccc-cHHHHhccccc------ccCHHHHHHHHHHHHHHHHHHHhh---hhhcc
Confidence            998 99999998764      577778888999999999999999   99998

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.78  E-value=6e-19  Score=162.51  Aligned_cols=123  Identities=21%  Similarity=0.301  Sum_probs=110.3

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccc--cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      .++|...++||+|+||+||.++- ++++.+|+|+++...-.  ...+...+|..+|.+++||.||++...+.+.+..|+|
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylV  103 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLV  103 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEE
Confidence            46788899999999999999995 57999999999654322  2345678999999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||+.||+|..+|.+.+       .+.+..+.-++.+|+.||.|||+.   +||||
T Consensus       104 ld~~~GGeLf~hL~~eg-------~F~E~~arfYlaEi~lAL~~LH~~---gIiyR  149 (357)
T KOG0598|consen  104 LDYLNGGELFYHLQREG-------RFSEDRARFYLAEIVLALGYLHSK---GIIYR  149 (357)
T ss_pred             EeccCCccHHHHHHhcC-------CcchhHHHHHHHHHHHHHHHHHhC---Ceeec
Confidence            99999999999999876       789999999999999999999999   99998

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.78  E-value=1.9e-19  Score=174.50  Aligned_cols=129  Identities=21%  Similarity=0.360  Sum_probs=113.1

Q ss_pred             HHHHHHhhCCCCCCeeCcCCceEEEEEEeCC-CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc
Q 014778          281 RELQVATDNFSNRNILGRGGFGKVYKGRLTD-GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE  359 (419)
Q Consensus       281 ~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  359 (419)
                      ++++....++...+.||-|.||.||.|+|+. ...||||.++++.  ...++|..|..+|+.++|||+|+|+|+|..+..
T Consensus       260 DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKEDt--MeveEFLkEAAvMKeikHpNLVqLLGVCT~EpP  337 (1157)
T KOG4278|consen  260 DKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT--MEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPP  337 (1157)
T ss_pred             chhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhhcc--hhHHHHHHHHHHHHhhcCccHHHHhhhhccCCC
Confidence            6667677778888999999999999999864 6689999997653  346799999999999999999999999999999


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .|||+|||.+|+|.+||++....     .++....+.+|-||++||+||..+   +.|||
T Consensus       338 FYIiTEfM~yGNLLdYLRecnr~-----ev~avvLlyMAtQIsSaMeYLEkk---nFIHR  389 (1157)
T KOG4278|consen  338 FYIITEFMCYGNLLDYLRECNRS-----EVPAVVLLYMATQISSAMEYLEKK---NFIHR  389 (1157)
T ss_pred             eEEEEecccCccHHHHHHHhchh-----hcchhHHHHHHHHHHHHHHHHHHh---hhhhh
Confidence            99999999999999999976432     456666778999999999999988   99998

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.77  E-value=6.8e-19  Score=163.47  Aligned_cols=119  Identities=24%  Similarity=0.425  Sum_probs=101.2

Q ss_pred             CCeeCcCCceEEEEEEeC-----CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          293 RNILGRGGFGKVYKGRLT-----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~~-----~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      .+.||+|.||.||+|.+.     .+..|+||.++........++|.+|++.+.+++||||++++|+|...+..++|+||+
T Consensus         4 ~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~~   83 (259)
T PF07714_consen    4 IKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEYC   83 (259)
T ss_dssp             EEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE--
T ss_pred             eeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeeccccccccccccccccccccccccccccccccc
Confidence            478999999999999975     256899999965433334678999999999999999999999999888899999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|.++|+...     ...+++.++..++.||++||+|||+.   +|+||
T Consensus        84 ~~g~L~~~L~~~~-----~~~~~~~~~~~i~~~i~~~l~~Lh~~---~iiH~  127 (259)
T PF07714_consen   84 PGGSLDDYLKSKN-----KEPLSEQQRLSIAIQIAEALSYLHSN---NIIHG  127 (259)
T ss_dssp             TTEBHHHHHHHTC-----TTTSBHHHHHHHHHHHHHHHHHHHHT---TEEES
T ss_pred             ccccccccccccc-----cccccccccccccccccccccccccc---ccccc
Confidence            9999999999761     11688999999999999999999999   99996

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.76  E-value=1.7e-18  Score=169.66  Aligned_cols=132  Identities=20%  Similarity=0.247  Sum_probs=108.3

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEe------CCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecC
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRL------TDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTP  357 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  357 (419)
                      ...++|...+.||+|+||.||+|+.      .++..||||+++........+.+.+|+.++..+ +|||||+++|+|...
T Consensus        32 ~~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~  111 (375)
T cd05104          32 FPRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVG  111 (375)
T ss_pred             cchHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccC
Confidence            3455678889999999999999973      245689999996544334456789999999999 899999999999999


Q ss_pred             CceeEEeccCCCCChhhhhcCCcccc------------------------------------------------------
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIVS------------------------------------------------------  383 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~~------------------------------------------------------  383 (419)
                      +..++||||+++|+|.++++......                                                      
T Consensus       112 ~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (375)
T cd05104         112 GPTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRS  191 (375)
T ss_pred             CcceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCccccccccccccccccc
Confidence            99999999999999999997532100                                                      


Q ss_pred             --------------CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          384 --------------GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       384 --------------~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                                    .....+++..+..++.||++||+|||+.   +|+||
T Consensus       192 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~  238 (375)
T cd05104         192 GSYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASK---NCIHR  238 (375)
T ss_pred             ceecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence                          0112477888999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.76  E-value=3.3e-18  Score=162.63  Aligned_cols=129  Identities=21%  Similarity=0.345  Sum_probs=105.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCC-----------------CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcce
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTD-----------------GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRL  350 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~-----------------g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l  350 (419)
                      +.|...+.||+|+||.||+|.+++                 +..||+|.++.........+|.+|++++.+++||||+++
T Consensus         5 ~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~   84 (304)
T cd05096           5 GHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRL   84 (304)
T ss_pred             hhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEE
Confidence            457777899999999999998532                 347999998654333345679999999999999999999


Q ss_pred             eEEEecCCceeEEeccCCCCChhhhhcCCccc------------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceec
Q 014778          351 RGFCMTPTERLLVYPFMVNGSVASCLRGMFIV------------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLF  418 (419)
Q Consensus       351 ~g~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~------------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiH  418 (419)
                      ++++.+.+..++||||+++|+|.+++......            ......+++.+...++.||+.||+|||+.   +|+|
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~ivH  161 (304)
T cd05096          85 LGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSL---NFVH  161 (304)
T ss_pred             EEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHC---Cccc
Confidence            99999999999999999999999998653211            11123478888999999999999999998   9999


Q ss_pred             C
Q 014778          419 C  419 (419)
Q Consensus       419 R  419 (419)
                      |
T Consensus       162 ~  162 (304)
T cd05096         162 R  162 (304)
T ss_pred             c
Confidence            7

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.76  E-value=4e-19  Score=164.62  Aligned_cols=120  Identities=16%  Similarity=0.311  Sum_probs=106.9

Q ss_pred             CCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccc--cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          290 FSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      |...+.+|+|.||.|-+++- ..|+.||||.++.+.-.  ++.-...+|+++|+.++||||++++.++...+...|||||
T Consensus        55 yE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIvivMEY  134 (668)
T KOG0611|consen   55 YEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIVMEY  134 (668)
T ss_pred             HHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEEEEe
Confidence            44457899999999999995 67999999999755422  2234578999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..+|+|++|+...+       .+++.++..|++||.+|++|.|.+   +++||
T Consensus       135 aS~GeLYDYiSer~-------~LsErEaRhfFRQIvSAVhYCHkn---rVvHR  177 (668)
T KOG0611|consen  135 ASGGELYDYISERG-------SLSEREARHFFRQIVSAVHYCHKN---RVVHR  177 (668)
T ss_pred             cCCccHHHHHHHhc-------cccHHHHHHHHHHHHHHHHHHhhc---cceec
Confidence            99999999999876       799999999999999999999999   99998

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.76  E-value=1.5e-18  Score=167.52  Aligned_cols=131  Identities=23%  Similarity=0.348  Sum_probs=105.6

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEe------CCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCC
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRL------TDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPT  358 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  358 (419)
                      +.++|...+.||+|+||.||+|..      .++..||||+++........+.+.+|+.++..+ +|||||+++|+|...+
T Consensus         5 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~   84 (338)
T cd05102           5 PRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPN   84 (338)
T ss_pred             chhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCC
Confidence            456788889999999999999974      235689999996543333346799999999999 8999999999987754


Q ss_pred             -ceeEEeccCCCCChhhhhcCCccc-------------------------------------------------------
Q 014778          359 -ERLLVYPFMVNGSVASCLRGMFIV-------------------------------------------------------  382 (419)
Q Consensus       359 -~~~lv~e~~~~GsL~~~L~~~~~~-------------------------------------------------------  382 (419)
                       ..++||||+++|+|.++++.....                                                       
T Consensus        85 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (338)
T cd05102          85 GPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETD  164 (338)
T ss_pred             CceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhcc
Confidence             578999999999999999753210                                                       


Q ss_pred             cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          383 SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       383 ~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..+...+++.++..++.||++||+|||+.   +|+||
T Consensus       165 ~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHr  198 (338)
T cd05102         165 DLWKSPLTMEDLICYSFQVARGMEFLASR---KCIHR  198 (338)
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHC---CEECC
Confidence            00123477888999999999999999998   99998

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.76  E-value=1.2e-18  Score=158.12  Aligned_cols=123  Identities=20%  Similarity=0.341  Sum_probs=104.4

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccC-HHHHHHHHHHHhcCCCCCCcceeEEEecC--CceeE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGG-ELQFQTEVEMISMAVHRNLLRLRGFCMTP--TERLL  362 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~-~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~l  362 (419)
                      .+.|...+.|++|.||.||+|+. ++++.||+|+++.+....+ .-.-.+|+.+|.+++|||||.+..+....  +..|+
T Consensus        75 v~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~  154 (419)
T KOG0663|consen   75 VEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYI  154 (419)
T ss_pred             HHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeee
Confidence            34567778999999999999996 4789999999975543222 34568999999999999999999887663  56999


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||||++ ||...++...      ..+...++..++.|+++|++|||++   .|+||
T Consensus       155 VMe~~Eh-DLksl~d~m~------q~F~~~evK~L~~QlL~glk~lH~~---wilHR  201 (419)
T KOG0663|consen  155 VMEYVEH-DLKSLMETMK------QPFLPGEVKTLMLQLLRGLKHLHDN---WILHR  201 (419)
T ss_pred             eHHHHHh-hHHHHHHhcc------CCCchHHHHHHHHHHHHHHHHHhhc---eeEec
Confidence            9999998 9999998764      2677888889999999999999999   99998

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.75  E-value=4.4e-18  Score=166.03  Aligned_cols=122  Identities=16%  Similarity=0.227  Sum_probs=106.5

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|+..+.||+|+||.||+++.. +|+.||||+++....  ......+.+|++++..++||||+++++++.+.+..++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            36778899999999999999964 689999999964321  222346789999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.|++.||+|||+.   +|+||
T Consensus        81 E~~~~g~L~~~l~~~~-------~l~~~~~~~~~~qi~~aL~~lH~~---~ivH~  125 (364)
T cd05599          81 EYLPGGDMMTLLMKKD-------TFTEEETRFYIAETILAIDSIHKL---GYIHR  125 (364)
T ss_pred             CCCCCcHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEec
Confidence            9999999999997653       578888999999999999999999   99997

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.75  E-value=1.2e-18  Score=167.53  Aligned_cols=121  Identities=20%  Similarity=0.288  Sum_probs=106.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      ++|...+.||+|.||.||||+-+ +.+.||+|.+..... ..+.+...+|++++++++|||||.++..|....+.|+|+|
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence            35667788999999999999964 688999999954332 2234568999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+.+ +|+.+|....       .+++.++..++.|+++||.|||+.   +|+||
T Consensus        82 ~a~g-~L~~il~~d~-------~lpEe~v~~~a~~LVsaL~yLhs~---rilhr  124 (808)
T KOG0597|consen   82 YAVG-DLFTILEQDG-------KLPEEQVRAIAYDLVSALYYLHSN---RILHR  124 (808)
T ss_pred             hhhh-hHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHhc---Ccccc
Confidence            9987 9999998766       799999999999999999999999   99998

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.75  E-value=6.8e-18  Score=165.50  Aligned_cols=121  Identities=15%  Similarity=0.195  Sum_probs=105.1

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      +|...+.||+|+||.||++.. .+++.||||++....  .....+.+.+|++++.+++|||||++++++.+.+..++|||
T Consensus         2 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~E   81 (377)
T cd05629           2 DFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIME   81 (377)
T ss_pred             CceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEEe
Confidence            577789999999999999986 478999999985432  12224568899999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++....       .+++..+..++.|++.||+|||+.   +|+||
T Consensus        82 ~~~gg~L~~~l~~~~-------~~~~~~~~~~~~ql~~aL~~LH~~---givHr  125 (377)
T cd05629          82 FLPGGDLMTMLIKYD-------TFSEDVTRFYMAECVLAIEAVHKL---GFIHR  125 (377)
T ss_pred             CCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            999999999997653       477778888999999999999999   99998

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.75  E-value=6.9e-18  Score=166.24  Aligned_cols=95  Identities=25%  Similarity=0.383  Sum_probs=80.1

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCC-CCCCcceeEEEecC
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-HRNLLRLRGFCMTP  357 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~  357 (419)
                      ...+.|...+.||+|+||.||+|+..      .+..||||+++........+.|.+|++++++++ |||||+++|+|.+.
T Consensus        34 ~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~~~  113 (400)
T cd05105          34 FPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKS  113 (400)
T ss_pred             ccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEccC
Confidence            34567888899999999999999852      234799999965444334567999999999996 99999999999999


Q ss_pred             CceeEEeccCCCCChhhhhcCC
Q 014778          358 TERLLVYPFMVNGSVASCLRGM  379 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~  379 (419)
                      +..++||||+++|+|.++|+..
T Consensus       114 ~~~~lv~Ey~~~g~L~~~l~~~  135 (400)
T cd05105         114 GPIYIITEYCFYGDLVNYLHKN  135 (400)
T ss_pred             CceEEEEEecCCCcHHHHHHHh
Confidence            9999999999999999998753

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.75  E-value=7.2e-18  Score=165.55  Aligned_cols=121  Identities=17%  Similarity=0.228  Sum_probs=105.2

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .|...+.||+|+||+||+|+. .+++.||||+++....  ......+.+|++++..++|+|||++++++.+.+..++|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            467778999999999999996 4688999999964321  2224568999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++.+..       .+++..+..++.||+.||+|||+.   +|+||
T Consensus        82 ~~~gg~L~~~l~~~~-------~~~e~~~~~~~~qi~~aL~~LH~~---givHr  125 (381)
T cd05626          82 YIPGGDMMSLLIRME-------VFPEVLARFYIAELTLAIESVHKM---GFIHR  125 (381)
T ss_pred             cCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---Ceeec
Confidence            999999999997654       477788888999999999999998   99998

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.74  E-value=5.5e-18  Score=160.15  Aligned_cols=121  Identities=17%  Similarity=0.197  Sum_probs=105.5

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      +|...+.||+|+||.||+|... +|+.||+|++....  .....+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   81 (291)
T cd05612           2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLME   81 (291)
T ss_pred             CceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEe
Confidence            5777899999999999999975 68999999985322  11234568899999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.++++...       .+++..+..++.|++.||+|||+.   +|+||
T Consensus        82 ~~~~~~L~~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~  125 (291)
T cd05612          82 YVPGGELFSYLRNSG-------RFSNSTGLFYASEIVCALEYLHSK---EIVYR  125 (291)
T ss_pred             CCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            999999999997654       577888889999999999999999   99997

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.74  E-value=9.8e-18  Score=163.52  Aligned_cols=122  Identities=14%  Similarity=0.179  Sum_probs=106.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|+..+.||+|+||+||++... +++.||+|+++....  ......+.+|+.++.+++|+||+++++++.+....++||
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            36778899999999999999864 689999999964321  122346888999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.|++.||+|||+.   +|+||
T Consensus        81 E~~~gg~L~~~l~~~~-------~l~~~~~~~~~~qi~~aL~~lH~~---givHr  125 (363)
T cd05628          81 EFLPGGDMMTLLMKKD-------TLTEEETQFYIAETVLAIDSIHQL---GFIHR  125 (363)
T ss_pred             cCCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeEec
Confidence            9999999999998654       578889999999999999999999   99998

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.74  E-value=7.4e-18  Score=157.24  Aligned_cols=121  Identities=21%  Similarity=0.391  Sum_probs=104.1

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC--ceeEEec
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT--ERLLVYP  365 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--~~~lv~e  365 (419)
                      ++...+.||+|+||.||.+... +|...|||.+....... .+.+.+|+.+|.+++|||||+.+|.....+  ..++.||
T Consensus        18 ~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~-~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mE   96 (313)
T KOG0198|consen   18 NWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPT-SESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFME   96 (313)
T ss_pred             hhhhhccccCccceEEEEEEecCCCcceeeeeeecccchh-HHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeee
Confidence            4556689999999999999974 58999999986442221 556899999999999999999999866655  5889999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|||.+++.+.++      .+++..+..+++||++||+|||++   +||||
T Consensus        97 y~~~GsL~~~~~~~g~------~l~E~~v~~ytr~iL~GL~ylHs~---g~vH~  141 (313)
T KOG0198|consen   97 YAPGGSLSDLIKRYGG------KLPEPLVRRYTRQILEGLAYLHSK---GIVHC  141 (313)
T ss_pred             ccCCCcHHHHHHHcCC------CCCHHHHHHHHHHHHHHHHHHHhC---CEecc
Confidence            9999999999998652      488999999999999999999999   99997

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.74  E-value=1.5e-17  Score=153.88  Aligned_cols=121  Identities=23%  Similarity=0.347  Sum_probs=106.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      ++|+..+.||+|+||.||++.+.++..+|+|.+...  .....+|.+|+.++++++||||+++++++...+..++||||+
T Consensus         4 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~   81 (256)
T cd05114           4 SELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEG--AMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFM   81 (256)
T ss_pred             HHcEEeeEecCCcCceEEEEEeccCceEEEEecccC--CccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcC
Confidence            356677889999999999999887888999998533  223568999999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|.++++....      .+++..+..++.|++.||+|||+.   +|+||
T Consensus        82 ~~~~L~~~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  124 (256)
T cd05114          82 ENGCLLNYLRQRQG------KLSKDMLLSMCQDVCEGMEYLERN---SFIHR  124 (256)
T ss_pred             CCCcHHHHHHhCcc------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            99999999975431      477888999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.74  E-value=1.1e-17  Score=160.93  Aligned_cols=122  Identities=17%  Similarity=0.261  Sum_probs=106.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...+.||+|+||.||+|... +++.||||.++...  .....+.+.+|+.++.+++||||+++++++.+++..++||
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   97 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLL   97 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEE
Confidence            46777899999999999999975 68999999985432  1223457899999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++..+..++.||+.||+|||+.   +|+||
T Consensus        98 e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~  142 (329)
T PTZ00263         98 EFVVGGELFTHLRKAG-------RFPNDVAKFYHAELVLAFEYLHSK---DIIYR  142 (329)
T ss_pred             cCCCCChHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            9999999999998654       567778888999999999999999   99997

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.74  E-value=1.2e-17  Score=161.71  Aligned_cols=124  Identities=19%  Similarity=0.289  Sum_probs=107.8

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc----cccCHHHHHHHHHHHhcCC-CCCCcceeEEEecCCc
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER----TQGGELQFQTEVEMISMAV-HRNLLRLRGFCMTPTE  359 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~----~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~  359 (419)
                      ..+.|...+.||+|.||+||.|.. .+|..||+|.++...    .....+...+|+.++++++ ||||++++.++.....
T Consensus        15 ~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~~   94 (370)
T KOG0583|consen   15 SIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPTK   94 (370)
T ss_pred             ccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCCe
Confidence            345778889999999999999985 478999999775431    1122445678999999999 9999999999999999


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++||||+.+|+|.+++....       .+.+.++..++.|+++|++|+|+.   +|+||
T Consensus        95 ~~ivmEy~~gGdL~~~i~~~g-------~l~E~~ar~~F~Qlisav~y~H~~---gi~HR  144 (370)
T KOG0583|consen   95 IYIVMEYCSGGDLFDYIVNKG-------RLKEDEARKYFRQLISAVAYCHSR---GIVHR  144 (370)
T ss_pred             EEEEEEecCCccHHHHHHHcC-------CCChHHHHHHHHHHHHHHHHHHhC---CEeeC
Confidence            999999999999999999844       688899999999999999999999   99998

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.74  E-value=1.5e-17  Score=160.19  Aligned_cols=121  Identities=17%  Similarity=0.240  Sum_probs=106.0

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      +|...+.||+|+||.||+|... +++.||||+++....  ....+.+.+|++++..++||||+++++++...+..++|||
T Consensus         2 ~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   81 (333)
T cd05600           2 DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAME   81 (333)
T ss_pred             CcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEe
Confidence            5777899999999999999975 689999999964321  2234578899999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.++++...       .+++.++..++.|++.||+|||+.   +|+||
T Consensus        82 ~~~g~~L~~~l~~~~-------~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~  125 (333)
T cd05600          82 YVPGGDFRTLLNNLG-------VLSEDHARFYMAEMFEAVDALHEL---GYIHR  125 (333)
T ss_pred             CCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            999999999997654       577888889999999999999999   99997

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.74  E-value=6.6e-18  Score=165.32  Aligned_cols=133  Identities=22%  Similarity=0.289  Sum_probs=108.1

Q ss_pred             HHHhhCCCCCCeeCcCCceEEEEEEe------CCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEec
Q 014778          284 QVATDNFSNRNILGRGGFGKVYKGRL------TDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMT  356 (419)
Q Consensus       284 ~~~~~~~~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  356 (419)
                      ....++|...+.||+|+||.||+|..      .++..||||+++..........+.+|+++++.+ +|+|||+++|+|..
T Consensus        34 ~~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~  113 (374)
T cd05106          34 EFPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTH  113 (374)
T ss_pred             cccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecC
Confidence            34556788889999999999999884      134589999996543333345688999999999 89999999999999


Q ss_pred             CCceeEEeccCCCCChhhhhcCCccc------------------------------------------------------
Q 014778          357 PTERLLVYPFMVNGSVASCLRGMFIV------------------------------------------------------  382 (419)
Q Consensus       357 ~~~~~lv~e~~~~GsL~~~L~~~~~~------------------------------------------------------  382 (419)
                      .+..++||||+++|+|.++++.....                                                      
T Consensus       114 ~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (374)
T cd05106         114 GGPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQ  193 (374)
T ss_pred             CCCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccccccc
Confidence            99999999999999999998653210                                                      


Q ss_pred             ---------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          383 ---------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       383 ---------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                               ......+++.++.+++.||++||+|||+.   +|+||
T Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~---giiHr  236 (374)
T cd05106         194 SSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASK---NCIHR  236 (374)
T ss_pred             cccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CEEec
Confidence                     01112477888999999999999999998   99998

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.73  E-value=9.5e-18  Score=165.22  Aligned_cols=97  Identities=24%  Similarity=0.364  Sum_probs=80.9

Q ss_pred             HHHHhhCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCC-CCCCcceeEEEe
Q 014778          283 LQVATDNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-HRNLLRLRGFCM  355 (419)
Q Consensus       283 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~  355 (419)
                      +..+.++|...+.||+|+||.||+|.+.      .++.||||+++........+.+.+|+++|.++. |||||+++|+|.
T Consensus        32 ~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~  111 (401)
T cd05107          32 WEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACT  111 (401)
T ss_pred             ceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEc
Confidence            3445556777899999999999999863      346899999965433333457899999999997 999999999999


Q ss_pred             cCCceeEEeccCCCCChhhhhcCC
Q 014778          356 TPTERLLVYPFMVNGSVASCLRGM  379 (419)
Q Consensus       356 ~~~~~~lv~e~~~~GsL~~~L~~~  379 (419)
                      ..+..++|+||+++|+|.+++++.
T Consensus       112 ~~~~~~iv~E~~~~g~L~~~l~~~  135 (401)
T cd05107         112 KGGPIYIITEYCRYGDLVDYLHRN  135 (401)
T ss_pred             cCCCcEEEEeccCCCcHHHHHHhc
Confidence            999999999999999999999754

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.73  E-value=1.8e-18  Score=166.43  Aligned_cols=111  Identities=20%  Similarity=0.421  Sum_probs=98.3

Q ss_pred             CCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCC
Q 014778          290 FSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      +...+-+|.|+-|.||.|+++ ++.||||++++.+        ..+|+.|++++|+||+.+.|+|......+||||||+.
T Consensus       126 IsELeWlGSGaQGAVF~Grl~-netVAVKKV~elk--------ETdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~  196 (904)
T KOG4721|consen  126 ISELEWLGSGAQGAVFLGRLH-NETVAVKKVRELK--------ETDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQ  196 (904)
T ss_pred             hhhhhhhccCcccceeeeecc-CceehhHHHhhhh--------hhhHHHHHhccCcceeeEeeeecCCceeEEeeecccc
Confidence            344578999999999999996 6789999996432        3578999999999999999999999999999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |-|...|+..+       .++....+....+||.||+|||.+   +||||
T Consensus       197 GqL~~VLka~~-------~itp~llv~Wsk~IA~GM~YLH~h---KIIHR  236 (904)
T KOG4721|consen  197 GQLYEVLKAGR-------PITPSLLVDWSKGIAGGMNYLHLH---KIIHR  236 (904)
T ss_pred             ccHHHHHhccC-------ccCHHHHHHHHHHhhhhhHHHHHh---hHhhh
Confidence            99999999765       566667778899999999999999   99998

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.73  E-value=2e-17  Score=158.78  Aligned_cols=116  Identities=22%  Similarity=0.224  Sum_probs=101.2

Q ss_pred             CeeCcCCceEEEEEEe-CCCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCC
Q 014778          294 NILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNG  370 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~G  370 (419)
                      ++||+|+||.||+++. .+|+.||+|.++....  ......+.+|++++++++||||+++.+++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            4699999999999996 4789999999964321  222346789999999999999999999999999999999999999


Q ss_pred             ChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          371 SVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       371 sL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus        81 ~L~~~l~~~~-------~~~~~~~~~~~~qi~~~L~~lH~~---~ivHr  119 (323)
T cd05571          81 ELFFHLSRER-------VFSEDRARFYGAEIVSALGYLHSC---DVVYR  119 (323)
T ss_pred             cHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeEeC
Confidence            9999997654       578888899999999999999999   99998

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.73  E-value=1.8e-17  Score=162.38  Aligned_cols=121  Identities=17%  Similarity=0.216  Sum_probs=105.1

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      +|...+.||+|+||.||+++. .+++.||||.+.....  ......+.+|++++.+++|+||+++++.+.+.+..++|||
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E   81 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEe
Confidence            577789999999999999996 4689999999854321  2234568899999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++....       .+++..+..++.||+.||+|||+.   +|+||
T Consensus        82 ~~~~g~L~~~i~~~~-------~~~~~~~~~~~~qi~~al~~lH~~---~ivHr  125 (376)
T cd05598          82 YIPGGDMMSLLIRLG-------IFEEDLARFYIAELTCAIESVHKM---GFIHR  125 (376)
T ss_pred             CCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeC
Confidence            999999999997654       467777888999999999999999   99998

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.73  E-value=2.3e-17  Score=153.58  Aligned_cols=123  Identities=24%  Similarity=0.388  Sum_probs=107.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC----CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      ++|+..+.||+|+||.||+|...    +...||||.++.........+|.+|+.++.+++||||+++++++...+..++|
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv   83 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMII   83 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEE
Confidence            56888899999999999999974    24589999986544444456799999999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.+++.....      .+++.++..++.|++.|++|||+.   +|+||
T Consensus        84 ~e~~~~~~L~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~  130 (266)
T cd05033          84 TEYMENGSLDKFLRENDG------KFTVGQLVGMLRGIASGMKYLSEM---NYVHR  130 (266)
T ss_pred             EEcCCCCCHHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            999999999999976432      578889999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.73  E-value=1.6e-17  Score=160.49  Aligned_cols=123  Identities=19%  Similarity=0.260  Sum_probs=105.6

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCC--CCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTD--GSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~--g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      .++|...+.||+|+||.||+|...+  +..||+|++....  .....+.+.+|+.++..++||||+++++++.+.+..++
T Consensus        29 ~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~l  108 (340)
T PTZ00426         29 YEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYL  108 (340)
T ss_pred             hhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEE
Confidence            3467778999999999999998642  3689999985332  12234578899999999999999999999999999999


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||+++|+|.+++....       .+++..+..++.|++.||+|||+.   +|+||
T Consensus       109 v~Ey~~~g~L~~~i~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHr  155 (340)
T PTZ00426        109 VLEFVIGGEFFTFLRRNK-------RFPNDVGCFYAAQIVLIFEYLQSL---NIVYR  155 (340)
T ss_pred             EEeCCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEcc
Confidence            999999999999998654       578888899999999999999999   99998

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.73  E-value=9.8e-19  Score=165.29  Aligned_cols=122  Identities=22%  Similarity=0.292  Sum_probs=105.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEE-eCCCCEEEEEEccccccccCHHHHHHHHHHHhcCC-CCCCcceeEEEecCC-ceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-HRNLLRLRGFCMTPT-ERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~-~~~lv~  364 (419)
                      +.|...+.||.|.||.||+|+ ..+|..||||+++......++--=.+|++.|+++. |||||++..++.+.+ ..++||
T Consensus        10 ~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fVf   89 (538)
T KOG0661|consen   10 DRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFVF   89 (538)
T ss_pred             HHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeeeH
Confidence            345666889999999999999 46799999999975443322333478999999999 999999999999988 899999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+. +|++.++++..      .+++.++..|+.||++||+|+|.+   ++.||
T Consensus        90 E~Md~-NLYqLmK~R~r------~fse~~irnim~QilqGL~hiHk~---GfFHR  134 (538)
T KOG0661|consen   90 EFMDC-NLYQLMKDRNR------LFSESDIRNIMYQILQGLAHIHKH---GFFHR  134 (538)
T ss_pred             Hhhhh-hHHHHHhhcCC------cCCHHHHHHHHHHHHHHHHHHHhc---Ccccc
Confidence            99987 89999987642      799999999999999999999999   99998

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.73  E-value=2.1e-17  Score=158.59  Aligned_cols=116  Identities=21%  Similarity=0.229  Sum_probs=101.0

Q ss_pred             CeeCcCCceEEEEEEe-CCCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCC
Q 014778          294 NILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNG  370 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~G  370 (419)
                      +.||+|+||.||++.. .+|+.||+|.++....  ......+.+|++++..++||||+++++++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            4699999999999996 4789999999964321  223456788999999999999999999999999999999999999


Q ss_pred             ChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          371 SVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       371 sL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|.+++....       .+++..+..++.||+.||+|||+.   +|+||
T Consensus        81 ~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~  119 (323)
T cd05595          81 ELFFHLSRER-------VFTEERARFYGAEIVSALEYLHSR---DVVYR  119 (323)
T ss_pred             cHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEec
Confidence            9999887654       578888999999999999999999   99998

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.73  E-value=1.2e-17  Score=156.31  Aligned_cols=115  Identities=25%  Similarity=0.367  Sum_probs=96.9

Q ss_pred             eeCcCCceEEEEEEeCC-------------------------CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcc
Q 014778          295 ILGRGGFGKVYKGRLTD-------------------------GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR  349 (419)
Q Consensus       295 ~lG~G~fg~Vy~~~~~~-------------------------g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~  349 (419)
                      .||+|+||.||+|.+..                         ...||+|.+..... ....+|.+|+.+++.++||||++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~l~h~niv~   80 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHR-DIALAFFETASLMSQVSHIHLAF   80 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHH-HHHHHHHHHHHHHhcCCCCCeee
Confidence            58999999999998521                         13589999854322 23457889999999999999999


Q ss_pred             eeEEEecCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          350 LRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       350 l~g~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|.+....++||||+++|+|..+++....      .+++..+..++.||++||+|||+.   +|+||
T Consensus        81 ~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~  141 (274)
T cd05076          81 VHGVCVRGSENIMVEEFVEHGPLDVCLRKEKG------RVPVAWKITVAQQLASALSYLEDK---NLVHG  141 (274)
T ss_pred             EEEEEEeCCceEEEEecCCCCcHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHcC---CccCC
Confidence            99999999999999999999999999875432      467788899999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.73  E-value=6.1e-18  Score=164.30  Aligned_cols=126  Identities=21%  Similarity=0.356  Sum_probs=108.9

Q ss_pred             HHHhhCCCCCCeeCcCCceEEEEEEeCC---C--CEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC
Q 014778          284 QVATDNFSNRNILGRGGFGKVYKGRLTD---G--SLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT  358 (419)
Q Consensus       284 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~---g--~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  358 (419)
                      +...+.....++||+|.||.||+|.+.+   |  ..||||..+.+......+.|.+|..+|++++|||||+|+|.|.+. 
T Consensus       385 el~Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~-  463 (974)
T KOG4257|consen  385 ELRRELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQ-  463 (974)
T ss_pred             eeehhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeecc-
Confidence            3444556667899999999999999732   3  368999998766666778999999999999999999999999864 


Q ss_pred             ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 ~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +.|+|||.++-|.|..||+....      .++......++.||+.||.|||+.   +.|||
T Consensus       464 P~WivmEL~~~GELr~yLq~nk~------sL~l~tL~ly~~Qi~talaYLeSk---rfVHR  515 (974)
T KOG4257|consen  464 PMWIVMELAPLGELREYLQQNKD------SLPLRTLTLYCYQICTALAYLESK---RFVHR  515 (974)
T ss_pred             ceeEEEecccchhHHHHHHhccc------cchHHHHHHHHHHHHHHHHHHHhh---chhhh
Confidence            68999999999999999997764      577778889999999999999999   99998

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.73  E-value=1.6e-17  Score=163.13  Aligned_cols=121  Identities=19%  Similarity=0.231  Sum_probs=104.8

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .|...+.||+|+||.||+|.. .+++.||+|.+.....  ......+.+|++++++++|+|||++++++.+.+..++|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            467789999999999999996 4688999999964321  2224568899999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++.+..       .+++..+..++.||+.||+|||+.   +|+||
T Consensus        82 ~~~gg~L~~~l~~~~-------~~~e~~~~~~~~qi~~al~~lH~~---~ivHr  125 (382)
T cd05625          82 YIPGGDMMSLLIRMG-------IFPEDLARFYIAELTCAVESVHKM---GFIHR  125 (382)
T ss_pred             CCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            999999999997653       467778888999999999999999   99998

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.73  E-value=9.6e-18  Score=149.96  Aligned_cols=122  Identities=20%  Similarity=0.296  Sum_probs=107.5

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|+....+|.|+||+|...+.+ +|..+|+|.++....  ....+...+|..+|+.+.||+++++.+.+.+.+..+|||
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvm  123 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVM  123 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEE
Confidence            45677799999999999999974 688999999964432  122345778999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|.|..+|++.+       ++++..+..+|.||+.|++|||+.   .|++|
T Consensus       124 eyv~GGElFS~Lrk~~-------rF~e~~arFYAAeivlAleylH~~---~iiYR  168 (355)
T KOG0616|consen  124 EYVPGGELFSYLRKSG-------RFSEPHARFYAAEIVLALEYLHSL---DIIYR  168 (355)
T ss_pred             eccCCccHHHHHHhcC-------CCCchhHHHHHHHHHHHHHHHHhc---Ceeec
Confidence            9999999999999876       789999999999999999999999   89887

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.73  E-value=1.5e-17  Score=156.29  Aligned_cols=125  Identities=18%  Similarity=0.348  Sum_probs=111.9

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .++|...++||.|..++||+|+. +.+..||||++.-+......++..+|+..|+.++||||++++..+..+...|+||.
T Consensus        25 ~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmp  104 (516)
T KOG0582|consen   25 AKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMP  104 (516)
T ss_pred             ccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeeh
Confidence            45688889999999999999995 67899999999766655556789999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||.+||+.+.++..-     +..+.+..+..|.+++++||.|||++   +-|||
T Consensus       105 fMa~GS~ldIik~~~-----~~Gl~E~~Ia~iLre~LkaL~YLH~~---G~IHR  150 (516)
T KOG0582|consen  105 FMAGGSLLDIIKTYY-----PDGLEEASIATILREVLKALDYLHQN---GHIHR  150 (516)
T ss_pred             hhcCCcHHHHHHHHc-----cccccHHHHHHHHHHHHHHHHHHHhc---Cceec
Confidence            999999999998643     22588889999999999999999999   99998

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.73  E-value=2.1e-17  Score=154.94  Aligned_cols=131  Identities=24%  Similarity=0.348  Sum_probs=111.3

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE  359 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  359 (419)
                      .+++|...+.||+|+||.||+|...      .+..||+|.+...........|.+|+.++++++|+||+++++++.+.+.
T Consensus         4 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (277)
T cd05036           4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLP   83 (277)
T ss_pred             CHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC
Confidence            3567888899999999999999974      3568999988644333345679999999999999999999999999999


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++||||+++|+|.++++...........+++.+++.++.||+.|++|||+.   +|+||
T Consensus        84 ~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~  140 (277)
T cd05036          84 RFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEEN---HFIHR  140 (277)
T ss_pred             cEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeec
Confidence            9999999999999999987643333344689999999999999999999998   89997

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.73  E-value=4.3e-18  Score=168.17  Aligned_cols=122  Identities=25%  Similarity=0.355  Sum_probs=106.9

Q ss_pred             CCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC------ceeEE
Q 014778          291 SNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT------ERLLV  363 (419)
Q Consensus       291 ~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------~~~lv  363 (419)
                      ...+.||+|+||.||+|+. .+|+.||||.++........+...+|+++|++++|+|||++++.-.+..      ...+|
T Consensus        16 ~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlv   95 (732)
T KOG4250|consen   16 EMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLV   95 (732)
T ss_pred             eehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEE
Confidence            3447899999999999995 5799999999987666666778999999999999999999998766543      46899


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||++|||+..|.+..+    ...+++.+.+.+..+++.||.|||++   +||||
T Consensus        96 mEyC~gGsL~~~L~~PEN----~~GLpE~e~l~lL~d~~~al~~LrEn---~IvHR  144 (732)
T KOG4250|consen   96 MEYCSGGSLRKVLNSPEN----AYGLPESEFLDLLSDLVSALRHLREN---GIVHR  144 (732)
T ss_pred             EeecCCCcHHHHhcCccc----ccCCCHHHHHHHHHHHHHHHHHHHHc---Cceec
Confidence            999999999999998654    33688999999999999999999999   99998

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.73  E-value=3.5e-18  Score=153.12  Aligned_cols=121  Identities=20%  Similarity=0.284  Sum_probs=100.8

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccC-HHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGG-ELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~-~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      .|+....+|+|+||+|||++.+ +|+.||||++.+...... .+-.++|+++|++++|+|+|.|+.+|......+||+||
T Consensus         3 kYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~   82 (396)
T KOG0593|consen    3 KYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEY   82 (396)
T ss_pred             HHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEeee
Confidence            3555678999999999999975 699999999965433222 34578999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++. ++.+-|.+...      .++.....+++.|++.|++|+|.+   +||||
T Consensus        83 ~dh-TvL~eLe~~p~------G~~~~~vk~~l~Q~l~ai~~cHk~---n~IHR  125 (396)
T KOG0593|consen   83 CDH-TVLHELERYPN------GVPSELVKKYLYQLLKAIHFCHKN---NCIHR  125 (396)
T ss_pred             cch-HHHHHHHhccC------CCCHHHHHHHHHHHHHHhhhhhhc---Ceecc
Confidence            998 44444444332      577788889999999999999999   99998

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.73  E-value=2.4e-17  Score=155.24  Aligned_cols=122  Identities=23%  Similarity=0.297  Sum_probs=104.0

Q ss_pred             CCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          290 FSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      |...+.||+|+||.||++.. .+|+.||||.+.....  ......+.+|+.++.+++|+|++++.+++.+.+..++|+||
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEe
Confidence            56678999999999999996 5799999999864321  22344688999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.+++.....     ..+++..+..++.|++.||+|||+.   +|+||
T Consensus        82 ~~~g~L~~~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~  126 (285)
T cd05631          82 MNGGDLKFHIYNMGN-----PGFDEQRAIFYAAELCCGLEDLQRE---RIVYR  126 (285)
T ss_pred             cCCCcHHHHHHhhCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CEEeC
Confidence            999999988864321     1478888999999999999999998   99998

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.73  E-value=2.2e-17  Score=157.93  Aligned_cols=122  Identities=22%  Similarity=0.410  Sum_probs=102.8

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCC----EEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      .+|+..+.||+|+||.||+|++. +|.    .||+|.++........++|.+|+.+++.++||||++++|+|... ..++
T Consensus         7 ~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~~   85 (316)
T cd05108           7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL   85 (316)
T ss_pred             hhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-Ccee
Confidence            35888899999999999999863 343    48999986443333456799999999999999999999999875 5679


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+||+++|+|.++++....      .+++.....++.||++||+|||+.   +|+||
T Consensus        86 v~e~~~~g~l~~~l~~~~~------~~~~~~~~~~~~qi~~~L~~LH~~---~iiH~  133 (316)
T cd05108          86 ITQLMPFGCLLDYVREHKD------NIGSQYLLNWCVQIAKGMNYLEER---RLVHR  133 (316)
T ss_pred             eeecCCCCCHHHHHHhccc------cCCHHHHHHHHHHHHHHHHHHHhc---Ceecc
Confidence            9999999999999986532      477788889999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.73  E-value=2.9e-17  Score=158.18  Aligned_cols=124  Identities=17%  Similarity=0.178  Sum_probs=106.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .++|...+.||+|+||.||++... +|..||+|.++........+.+.+|++++.+++||||+++++++..++..++|||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (331)
T cd06649           4 DDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (331)
T ss_pred             cccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEee
Confidence            357888899999999999999975 6889999998644332334579999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.++++...       .+++..+..++.|++.||.|||+..  +|+||
T Consensus        84 ~~~~~~L~~~l~~~~-------~~~~~~~~~~~~~i~~~l~~lH~~~--~ivH~  128 (331)
T cd06649          84 HMDGGSLDQVLKEAK-------RIPEEILGKVSIAVLRGLAYLREKH--QIMHR  128 (331)
T ss_pred             cCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHhhcC--CEEcC
Confidence            999999999997654       4778888899999999999999741  59997

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.72  E-value=3.5e-17  Score=157.36  Aligned_cols=116  Identities=22%  Similarity=0.248  Sum_probs=101.5

Q ss_pred             CeeCcCCceEEEEEEe-CCCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCC
Q 014778          294 NILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNG  370 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~G  370 (419)
                      +.||+|+||.||++.. .+|+.||||.+.....  ......+.+|+++++.++||||+++.+++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            4689999999999996 4689999999964321  223457889999999999999999999999999999999999999


Q ss_pred             ChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          371 SVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       371 sL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus        81 ~L~~~l~~~~-------~l~~~~~~~~~~qi~~aL~~LH~~---~ivHr  119 (328)
T cd05593          81 ELFFHLSRER-------VFSEDRTRFYGAEIVSALDYLHSG---KIVYR  119 (328)
T ss_pred             CHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeEec
Confidence            9999987654       578888999999999999999999   99998

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.72  E-value=3.2e-17  Score=158.03  Aligned_cols=124  Identities=18%  Similarity=0.195  Sum_probs=106.3

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .++|+..+.||+|+||.||++... ++..+|+|.++..........+.+|++++.+++|+||+++++++.+.+..++|||
T Consensus         4 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   83 (333)
T cd06650           4 DDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   83 (333)
T ss_pred             hhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEe
Confidence            357888899999999999999975 6889999988644332334579999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.++++...       .+++.....++.|++.||.|||+..  +|+||
T Consensus        84 ~~~~~~L~~~l~~~~-------~~~~~~~~~~~~~l~~~l~~lH~~~--~ivH~  128 (333)
T cd06650          84 HMDGGSLDQVLKKAG-------RIPEQILGKVSIAVIKGLTYLREKH--KIMHR  128 (333)
T ss_pred             cCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhcC--CEEec
Confidence            999999999997643       4677788899999999999999641  69997

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.72  E-value=2.8e-17  Score=156.89  Aligned_cols=114  Identities=18%  Similarity=0.235  Sum_probs=99.8

Q ss_pred             eCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCCh
Q 014778          296 LGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSV  372 (419)
Q Consensus       296 lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~GsL  372 (419)
                      ||+|+||.||++... +++.||+|.++...  .......+.+|+.++.+++||||+++++++...+..++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            699999999999974 68899999986432  222345688999999999999999999999999999999999999999


Q ss_pred             hhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          373 ASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       373 ~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .+++....       .+++..+..++.|++.||+|||+.   +|+||
T Consensus        81 ~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~Hr  117 (312)
T cd05585          81 FHHLQREG-------RFDLSRARFYTAELLCALENLHKF---NVIYR  117 (312)
T ss_pred             HHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeEeC
Confidence            99997653       578888899999999999999998   99998

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.72  E-value=3.6e-17  Score=154.26  Aligned_cols=122  Identities=22%  Similarity=0.360  Sum_probs=104.6

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ++|...+.||+|+||.||+|... +++.||+|.++..........+.+|+.++++++||||+++++++...+..++||||
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   84 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEY   84 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeC
Confidence            45777899999999999999964 68899999996443333445788999999999999999999999999899999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++ +|.+++.....      .+++.++..++.||+.||+|||+.   +|+||
T Consensus        85 ~~~-~l~~~l~~~~~------~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~  127 (288)
T cd07871          85 LDS-DLKQYLDNCGN------LMSMHNVKIFMFQLLRGLSYCHKR---KILHR  127 (288)
T ss_pred             CCc-CHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            984 99998875431      467788889999999999999998   99998

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.72  E-value=3.3e-17  Score=151.18  Aligned_cols=117  Identities=25%  Similarity=0.394  Sum_probs=101.8

Q ss_pred             CeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCCh
Q 014778          294 NILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSV  372 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~GsL  372 (419)
                      +.||+|+||.||+|... +++.||+|.+...........|.+|++++++++||||++++++|......++|+||+++|+|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF   80 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence            36899999999999974 78999999986443333356799999999999999999999999999999999999999999


Q ss_pred             hhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          373 ASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       373 ~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++++....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus        81 ~~~~~~~~~------~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~  118 (252)
T cd05084          81 LTFLRTEGP------RLKVKELIQMVENAAAGMEYLESK---HCIHR  118 (252)
T ss_pred             HHHHHhCCC------CCCHHHHHHHHHHHHHHHHHHHhC---Ccccc
Confidence            999975431      477888999999999999999998   89997

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.72  E-value=2.1e-17  Score=161.53  Aligned_cols=123  Identities=15%  Similarity=0.217  Sum_probs=105.2

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      ..++|...+.||+|+||.||+++.. +++.||+|.++...  .......+.+|+.+++.++||||+++++++.+++..++
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~l  120 (370)
T cd05596          41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYM  120 (370)
T ss_pred             CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEE
Confidence            4567888899999999999999964 68899999995322  12233457899999999999999999999999999999


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||+++|+|.++++..        .++...+..++.|++.||+|||+.   +|+||
T Consensus       121 v~Ey~~gg~L~~~l~~~--------~l~~~~~~~~~~qi~~aL~~LH~~---~ivHr  166 (370)
T cd05596         121 VMEYMPGGDLVNLMSNY--------DIPEKWARFYTAEVVLALDAIHSM---GFIHR  166 (370)
T ss_pred             EEcCCCCCcHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            99999999999998754        356667788899999999999998   99998

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.72  E-value=3.9e-17  Score=155.61  Aligned_cols=122  Identities=16%  Similarity=0.153  Sum_probs=104.8

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      +|...+.||+|+||.||++... ++..+|+|.+..........++.+|++++.+++||||+++++++..++..++|+||+
T Consensus         2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey~   81 (308)
T cd06615           2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEHM   81 (308)
T ss_pred             CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeecc
Confidence            5778899999999999999964 688999999864322223456889999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|.++++...       .+++..+..++.|+++||.|||+.+  +|+||
T Consensus        82 ~~~~L~~~l~~~~-------~~~~~~~~~~~~~i~~~l~~lH~~~--~i~H~  124 (308)
T cd06615          82 DGGSLDQVLKKAG-------RIPENILGKISIAVLRGLTYLREKH--KIMHR  124 (308)
T ss_pred             CCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhhC--CEEEC
Confidence            9999999997653       5778888899999999999999731  79997

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=5.7e-19  Score=156.66  Aligned_cols=127  Identities=18%  Similarity=0.300  Sum_probs=103.9

Q ss_pred             CCCCCCeeCcCCceEEEEEE-eCCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeE-EEecCCc-eeEEe
Q 014778          289 NFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRG-FCMTPTE-RLLVY  364 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g-~~~~~~~-~~lv~  364 (419)
                      +|...++||+|.||+|||+. +.+|..||.|.+.-.. +....++...|+.+|++++|||||++++ -+.++.+ .+|||
T Consensus        20 ~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivm   99 (375)
T KOG0591|consen   20 DYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVM   99 (375)
T ss_pred             HHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHH
Confidence            45556789999999999999 5789999999996322 2334567999999999999999999998 4444455 78999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccc--eecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSI--LLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~--IiHR  419 (419)
                      ||+..|||.+.+++-+..   ...+++..+++++.|+|+||..+|.. -|+  |+||
T Consensus       100 E~c~~GDLsqmIk~~K~q---kr~ipE~~Vwk~f~QL~~AL~~cH~~-~~r~~VmHR  152 (375)
T KOG0591|consen  100 ELCDAGDLSQMIKHFKKQ---KRLIPEKTVWKYFVQLCRALYHCHSK-IPRGTVMHR  152 (375)
T ss_pred             HhhcccCHHHHHHHHHhc---cccCchHHHHHHHHHHHHHHHHHhcc-ccccceeec
Confidence            999999999999865432   23799999999999999999999973 346  8888

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.72  E-value=8.2e-18  Score=162.53  Aligned_cols=122  Identities=19%  Similarity=0.295  Sum_probs=107.2

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEE-eCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      +...|.....||+|+.|.||.+. ..+++.||||++.-. .+..++-..+|+.+|+..+|+|||+++..|...++.|+||
T Consensus       271 P~~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~-~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVM  349 (550)
T KOG0578|consen  271 PRSKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLR-KQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVM  349 (550)
T ss_pred             hhhhhcchhhhccccccceeeeeeccCCceEEEEEEEec-cCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEE
Confidence            34567777889999999999998 457899999999533 3334456789999999999999999999998899999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||++|+|.+.+...        .+++.+...|+.++++||+|||..   +||||
T Consensus       350 Eym~ggsLTDvVt~~--------~~~E~qIA~Icre~l~aL~fLH~~---gIiHr  393 (550)
T KOG0578|consen  350 EYMEGGSLTDVVTKT--------RMTEGQIAAICREILQGLKFLHAR---GIIHR  393 (550)
T ss_pred             eecCCCchhhhhhcc--------cccHHHHHHHHHHHHHHHHHHHhc---ceeee
Confidence            999999999988765        589999999999999999999999   99998

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.72  E-value=5.6e-17  Score=154.12  Aligned_cols=123  Identities=20%  Similarity=0.330  Sum_probs=105.1

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .++|...+.||+|+||.||+|... +++.||||.++..........+.+|+.+++.++||||+++++++.+++..++|||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e   83 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFE   83 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEE
Confidence            356888899999999999999975 7899999999644333334567899999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |++ |+|.+++.....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus        84 ~~~-~~l~~~~~~~~~------~~~~~~~~~~~~qi~~al~~lH~~---~ivH~  127 (303)
T cd07869          84 YVH-TDLCQYMDKHPG------GLHPENVKLFLFQLLRGLSYIHQR---YILHR  127 (303)
T ss_pred             CCC-cCHHHHHHhCCC------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            996 688888865432      467788889999999999999999   99998

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.72  E-value=4.1e-17  Score=157.13  Aligned_cols=123  Identities=17%  Similarity=0.230  Sum_probs=105.5

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...+.||+|+||.||+++.. +++.||+|.+....  .....+.|.+|+.++..++|+||+++++++.+++..++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            35777899999999999999964 68999999985322  1223456889999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++.....      .+++..+..++.||+.||+|||+.   +|+||
T Consensus        81 e~~~g~~L~~~l~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~  126 (331)
T cd05597          81 DYYVGGDLLTLLSKFED------RLPEDMARFYLAEMVLAIDSVHQL---GYVHR  126 (331)
T ss_pred             ecCCCCcHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CeEEC
Confidence            99999999999975321      577888889999999999999999   99998

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.72  E-value=5.1e-17  Score=155.52  Aligned_cols=116  Identities=22%  Similarity=0.317  Sum_probs=100.5

Q ss_pred             CeeCcCCceEEEEEEe----CCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCC
Q 014778          294 NILGRGGFGKVYKGRL----TDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMV  368 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~  368 (419)
                      +.||+|+||.||+++.    .+|+.||+|+++.... ......+.+|++++++++||||+++++++..++..++||||++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            5799999999999874    3688999999964322 2234467889999999999999999999999999999999999


Q ss_pred             CCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          369 NGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       369 ~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|+|.+++....       .+++.++..++.||++||+|||+.   +|+||
T Consensus        82 ~~~L~~~l~~~~-------~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~  122 (318)
T cd05582          82 GGDLFTRLSKEV-------MFTEEDVKFYLAELALALDHLHSL---GIIYR  122 (318)
T ss_pred             CCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CEecC
Confidence            999999997643       578889999999999999999998   99997

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.72  E-value=3.2e-17  Score=160.19  Aligned_cols=125  Identities=16%  Similarity=0.221  Sum_probs=106.9

Q ss_pred             HHHhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCce
Q 014778          284 QVATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       284 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  360 (419)
                      ....++|...+.||+|+||.||++... +++.||+|.+....  .......+.+|+.+++.++||||+++++++.+++..
T Consensus        39 ~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~  118 (370)
T cd05621          39 QMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYL  118 (370)
T ss_pred             CCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEE
Confidence            344567888899999999999999975 68899999985322  122344688999999999999999999999999999


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++|+|.+++...        .+++..+..++.||+.||+|||+.   +|+||
T Consensus       119 ~lv~Ey~~gg~L~~~l~~~--------~~~~~~~~~~~~qil~aL~~LH~~---~IvHr  166 (370)
T cd05621         119 YMVMEYMPGGDLVNLMSNY--------DVPEKWAKFYTAEVVLALDAIHSM---GLIHR  166 (370)
T ss_pred             EEEEcCCCCCcHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHC---CeEec
Confidence            9999999999999999754        366778888999999999999999   99998

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>PHA02988 hypothetical protein; Provisional

Probab=99.72  E-value=7.2e-17  Score=151.93  Aligned_cols=131  Identities=12%  Similarity=0.137  Sum_probs=105.2

Q ss_pred             ccccccHHHHHHHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccC--HHHHHHHHHHHhcCCCCCCccee
Q 014778          274 QLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGG--ELQFQTEVEMISMAVHRNLLRLR  351 (419)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~--~~~f~~E~~~l~~l~H~niv~l~  351 (419)
                      ..+.++.+++     +......||+|++|.||+|.+ +|+.||||+++.......  .+.|.+|+.+|.+++|||||+++
T Consensus        11 ~~~~i~~~~i-----~~~~~~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~   84 (283)
T PHA02988         11 DIKCIESDDI-----DKYTSVLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIY   84 (283)
T ss_pred             cceecCHHHc-----CCCCCeEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            3445566666     233347899999999999998 688999999964422111  35688999999999999999999


Q ss_pred             EEEec----CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          352 GFCMT----PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       352 g~~~~----~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |++.+    ....++||||+++|+|.++++...       .+++.....++.|++.||.|||+..  +++||
T Consensus        85 g~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~-------~~~~~~~~~i~~~i~~~l~~lH~~~--~~~Hr  147 (283)
T PHA02988         85 GFIIDIVDDLPRLSLILEYCTRGYLREVLDKEK-------DLSFKTKLDMAIDCCKGLYNLYKYT--NKPYK  147 (283)
T ss_pred             eeEEecccCCCceEEEEEeCCCCcHHHHHhhCC-------CCChhHHHHHHHHHHHHHHHHHhcC--CCCCC
Confidence            99977    346789999999999999998653       5788889999999999999999632  56787

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.72  E-value=4.1e-17  Score=153.66  Aligned_cols=122  Identities=21%  Similarity=0.293  Sum_probs=103.9

Q ss_pred             CCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          290 FSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      |+..+.||+|+||+||++.. .+++.||||.+.....  ......+.+|+.++++++||||+++++++.+++..++||||
T Consensus         2 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05605           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEec
Confidence            56678999999999999996 4789999999964322  12234678899999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.+++.....     ..+++..+..++.|++.||+|||+.   +|+||
T Consensus        82 ~~~~~L~~~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~  126 (285)
T cd05605          82 MNGGDLKFHIYNMGN-----PGFDEERAVFYAAEITCGLEDLHRE---RIVYR  126 (285)
T ss_pred             cCCCcHHHHHHhcCc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcEec
Confidence            999999998865321     1578889999999999999999998   99997

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.71  E-value=3.9e-17  Score=152.19  Aligned_cols=129  Identities=19%  Similarity=0.244  Sum_probs=108.1

Q ss_pred             HHHHhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCcee
Q 014778          283 LQVATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       283 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  361 (419)
                      ++.+++++.....||+|+||.||+|... ++..||+|.+.... ....+.+.+|++++++++|+||+++++++...+..+
T Consensus         3 ~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   81 (268)
T cd06624           3 YEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERD-SRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFK   81 (268)
T ss_pred             cccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCC-HHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEE
Confidence            4556778888889999999999999964 67899999985432 223457999999999999999999999999999999


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|+||+++++|.++++.....    ...++..+..++.||++|++|||+.   +|+||
T Consensus        82 lv~e~~~~~~L~~~l~~~~~~----~~~~~~~~~~~~~qi~~al~~lH~~---~i~h~  132 (268)
T cd06624          82 IFMEQVPGGSLSALLRSKWGP----LKDNEQTIIFYTKQILEGLKYLHDN---QIVHR  132 (268)
T ss_pred             EEEecCCCCCHHHHHHHhccc----CCCcHHHHHHHHHHHHHHHHHHHHC---CEeec
Confidence            999999999999999864211    0126677888999999999999998   99997

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.71  E-value=1.5e-17  Score=159.60  Aligned_cols=124  Identities=16%  Similarity=0.215  Sum_probs=107.6

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccc--cCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCcee
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQ--GGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~--~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~  361 (419)
                      ...+|...+.||+|+|.+|++|+. .+++.||||++....-.  ...+-...|-++|.++ .||.||+|+..+.++...|
T Consensus        71 ~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sLY  150 (604)
T KOG0592|consen   71 TPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESLY  150 (604)
T ss_pred             ChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccceE
Confidence            345788889999999999999995 57999999999543321  1123456788889998 8999999999999999999


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|+||++||+|.++|++.+       .+++.-+.-++.||+.|++|||++   +||||
T Consensus       151 FvLe~A~nGdll~~i~K~G-------sfde~caR~YAAeIldAleylH~~---GIIHR  198 (604)
T KOG0592|consen  151 FVLEYAPNGDLLDLIKKYG-------SFDETCARFYAAEILDALEYLHSN---GIIHR  198 (604)
T ss_pred             EEEEecCCCcHHHHHHHhC-------cchHHHHHHHHHHHHHHHHHHHhc---Cceec
Confidence            9999999999999999876       688888899999999999999999   99998

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.71  E-value=3.9e-17  Score=154.50  Aligned_cols=125  Identities=20%  Similarity=0.287  Sum_probs=102.5

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc-------------ccCHHHHHHHHHHHhcCCCCCCcce
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT-------------QGGELQFQTEVEMISMAVHRNLLRL  350 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-------------~~~~~~f~~E~~~l~~l~H~niv~l  350 (419)
                      ...+.|.....||+|.||.|-+|+. .+++.||||.+.....             ....+...+|+.+|++++|||||+|
T Consensus        94 k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~L  173 (576)
T KOG0585|consen   94 KQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKL  173 (576)
T ss_pred             eehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEE
Confidence            3456788889999999999999995 4799999999953211             0113578999999999999999999


Q ss_pred             eEEEecC--CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          351 RGFCMTP--TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       351 ~g~~~~~--~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +.+..++  +..|||+|||..|.+...=....       .+.+.++.++.++++.||+|||.+   +||||
T Consensus       174 iEvLDDP~s~~~YlVley~s~G~v~w~p~d~~-------els~~~Ar~ylrDvv~GLEYLH~Q---giiHR  234 (576)
T KOG0585|consen  174 IEVLDDPESDKLYLVLEYCSKGEVKWCPPDKP-------ELSEQQARKYLRDVVLGLEYLHYQ---GIIHR  234 (576)
T ss_pred             EEeecCcccCceEEEEEeccCCccccCCCCcc-------cccHHHHHHHHHHHHHHHHHHHhc---Ceecc
Confidence            9998775  56899999999998754322221       288899999999999999999999   99998

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.71  E-value=5.4e-17  Score=151.21  Aligned_cols=123  Identities=23%  Similarity=0.374  Sum_probs=105.0

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-C---CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-D---GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~---g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      ++|...+.||+|+||.||+|... +   +..+|+|.++........+.|.+|+.++.+++||||+++++++...+..++|
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   83 (267)
T cd05066           4 SCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIV   83 (267)
T ss_pred             HHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEE
Confidence            45677799999999999999863 2   3379999986543333356799999999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.++++....      .+++.++..++.|++.|++|||+.   +|+||
T Consensus        84 ~e~~~~~~L~~~~~~~~~------~~~~~~~~~i~~~i~~~l~~lH~~---~i~h~  130 (267)
T cd05066          84 TEYMENGSLDAFLRKHDG------QFTVIQLVGMLRGIASGMKYLSDM---GYVHR  130 (267)
T ss_pred             EEcCCCCCHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---CEeeh
Confidence            999999999999976431      478888999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.71  E-value=6.7e-17  Score=150.65  Aligned_cols=120  Identities=24%  Similarity=0.300  Sum_probs=99.1

Q ss_pred             eeCcCCceEEEEEEeCC---CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCC
Q 014778          295 ILGRGGFGKVYKGRLTD---GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGS  371 (419)
Q Consensus       295 ~lG~G~fg~Vy~~~~~~---g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~Gs  371 (419)
                      .||+|+||.||+|...+   ...+|+|.+...........|.+|+++++.++|+||+++++++......++||||+++|+
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGD   81 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCc
Confidence            58999999999998533   457889987544333335578999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          372 VASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       372 L~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |.++++......  .....+.....++.||+.|++|||+.   +|+||
T Consensus        82 L~~~l~~~~~~~--~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~  124 (269)
T cd05042          82 LKNYLRSNRGMV--AQMAQKDVLQRMACEVASGLLWLHQA---DFIHS  124 (269)
T ss_pred             HHHHHHhccccc--cccccHHHHHHHHHHHHHHHHHHHhc---CEecc
Confidence            999998654211  12345677889999999999999999   99997

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.71  E-value=1.2e-17  Score=150.66  Aligned_cols=125  Identities=22%  Similarity=0.269  Sum_probs=112.8

Q ss_pred             cHHHHHHHhhCCCCCCeeCcCCceEEEEEE-eCCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEec
Q 014778          279 SLRELQVATDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMT  356 (419)
Q Consensus       279 ~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  356 (419)
                      +++|...-|+     +++|+|+|+.|-.+. +.+|..+|||++... ....+....+|++++.++ .|+||++|+.++.+
T Consensus        74 ~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~EYAVKiidKq-~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEd  147 (463)
T KOG0607|consen   74 KFEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQ-PGHSRSRVFREVETFYQCQGHKNILQLIEFFED  147 (463)
T ss_pred             hHHHHHHhHH-----HHhcCccceeeeeeeeeccchhhhhhhhhcC-CchHHHHHHHHHHHHHHhcCCccHHHHHHHhcc
Confidence            4678888787     889999999999988 678999999999654 334466788999999998 59999999999999


Q ss_pred             CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          357 PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       357 ~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +...|||||-|.+|+|.++++.+.       .+++.++.++.++|+.||.|||.+   +|.||
T Consensus       148 d~~FYLVfEKm~GGplLshI~~~~-------~F~E~EAs~vvkdia~aLdFlH~k---gIAHR  200 (463)
T KOG0607|consen  148 DTRFYLVFEKMRGGPLLSHIQKRK-------HFNEREASRVVKDIASALDFLHTK---GIAHR  200 (463)
T ss_pred             cceEEEEEecccCchHHHHHHHhh-------hccHHHHHHHHHHHHHHHHHHhhc---Ccccc
Confidence            999999999999999999999876       799999999999999999999999   99998

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.71  E-value=5.3e-17  Score=158.21  Aligned_cols=122  Identities=16%  Similarity=0.209  Sum_probs=106.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|+..+.||+|+||.||++... +++.||+|.++...  .......+.+|+.++..++|+||+++++++.+.+..++||
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            35777899999999999999964 68999999996432  1223456888999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++..+..++.|++.||+|||+.   +|+||
T Consensus        81 E~~~gg~L~~~l~~~~-------~l~~~~~~~~~~qi~~~L~~lH~~---givHr  125 (360)
T cd05627          81 EFLPGGDMMTLLMKKD-------TLSEEATQFYIAETVLAIDAIHQL---GFIHR  125 (360)
T ss_pred             eCCCCccHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEcc
Confidence            9999999999997654       578888899999999999999999   99998

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.71  E-value=7.5e-17  Score=148.52  Aligned_cols=117  Identities=26%  Similarity=0.408  Sum_probs=102.4

Q ss_pred             CeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCChh
Q 014778          294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVA  373 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~GsL~  373 (419)
                      ++||+|+||.||+|..++++.+|+|.++..........|.+|++++++++|||++++++++...+..++||||+++|+|.
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   80 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFL   80 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHH
Confidence            36899999999999988889999999865433333457899999999999999999999999999999999999999999


Q ss_pred             hhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          374 SCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       374 ~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++.....      .+++..+..++.|++.||.|||+.   +++||
T Consensus        81 ~~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~~~H~  117 (250)
T cd05085          81 SFLRKKKD------ELKTKQLVKFALDAAAGMAYLESK---NCIHR  117 (250)
T ss_pred             HHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHhC---Ceeec
Confidence            99875432      467888999999999999999988   99997

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.71  E-value=6.4e-17  Score=150.86  Aligned_cols=120  Identities=23%  Similarity=0.254  Sum_probs=99.4

Q ss_pred             eeCcCCceEEEEEEeC---CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCC
Q 014778          295 ILGRGGFGKVYKGRLT---DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGS  371 (419)
Q Consensus       295 ~lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~Gs  371 (419)
                      .||+|+||.||+|...   ++..+|+|.++..........|.+|+.++++++|||+++++|++.+....++||||+++|+
T Consensus         2 ~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05087           2 EIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGD   81 (269)
T ss_pred             cccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCc
Confidence            5899999999999864   3457999998654433334579999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          372 VASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       372 L~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |.++++.....  .....++..+..++.|++.|++|||+.   +|+||
T Consensus        82 L~~~l~~~~~~--~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~  124 (269)
T cd05087          82 LKGYLRSCRKA--ELMTPDPTTLQRMACEIALGLLHLHKN---NFIHS  124 (269)
T ss_pred             HHHHHHHhhhc--ccccccHHHHHHHHHHHHHHHHHHHHC---CEecc
Confidence            99999764321  112356667788999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.71  E-value=1.5e-17  Score=168.40  Aligned_cols=124  Identities=15%  Similarity=0.251  Sum_probs=103.6

Q ss_pred             CCCCCCeeCcCCceEEEEEEeCCC-CEEEEEEccccccccCHHHHHHHHHHHhcCC-CCCCcceeE-EEecC------Cc
Q 014778          289 NFSNRNILGRGGFGKVYKGRLTDG-SLVAVKRLKEERTQGGELQFQTEVEMISMAV-HRNLLRLRG-FCMTP------TE  359 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~~g-~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g-~~~~~------~~  359 (419)
                      .+...++|.+|||+.||.+....+ ..||+|++-.. +....+...+|+++|+.++ |+|||.+++ .....      -+
T Consensus        38 ~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~-de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~E  116 (738)
T KOG1989|consen   38 RVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVN-DEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWE  116 (738)
T ss_pred             EEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecC-CHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeE
Confidence            455668999999999999997654 99999998433 4445667899999999997 999999998 33221      35


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .+|.||||++|+|-+++..+..     ..+++.++++|+.|+|+|+.+|| .++|+||||
T Consensus       117 vllLmEyC~gg~Lvd~mn~Rlq-----~~lte~eVLkIf~dv~~AVa~mH-~~~pPiIHR  170 (738)
T KOG1989|consen  117 VLLLMEYCKGGSLVDFMNTRLQ-----TRLTEDEVLKIFYDVCEAVAAMH-YLKPPIIHR  170 (738)
T ss_pred             EEeehhhccCCcHHHHHHHHHh-----ccCChHHHHHHHHHHHHHHHHHh-cCCCccchh
Confidence            6899999999999999985432     26999999999999999999999 679999999

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.71  E-value=7e-17  Score=149.77  Aligned_cols=123  Identities=20%  Similarity=0.295  Sum_probs=106.9

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      .++|...+.||+|+||.||+|...++..||+|.+....  ...+.+.+|+.++++++|+|++++++++...+..+++|||
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   82 (261)
T cd05072           5 RESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGT--MSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEY   82 (261)
T ss_pred             hHHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCc--hhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEec
Confidence            35677789999999999999998888899999985432  2356899999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.++++....     ..+++..+..++.|+++|++|||+.   +|+||
T Consensus        83 ~~~~~L~~~l~~~~~-----~~~~~~~~~~~~~~l~~~l~~LH~~---~i~H~  127 (261)
T cd05072          83 MAKGSLLDFLKSDEG-----GKVLLPKLIDFSAQIAEGMAYIERK---NYIHR  127 (261)
T ss_pred             CCCCcHHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            999999999976431     1577778889999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.71  E-value=7.9e-17  Score=149.22  Aligned_cols=120  Identities=23%  Similarity=0.337  Sum_probs=104.9

Q ss_pred             CCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCC
Q 014778          289 NFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMV  368 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~  368 (419)
                      +|...+.||+|+||.||+|...++..+|||.++...  ....+|.+|+.++.+++||||+++++++...+..++||||++
T Consensus         5 ~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   82 (256)
T cd05113           5 DLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS--MSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMS   82 (256)
T ss_pred             HeEEeeEecCcccceEEEEEecCCCcEEEEEcCCCc--ccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCC
Confidence            466678899999999999998777779999986432  235679999999999999999999999999889999999999


Q ss_pred             CCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          369 NGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       369 ~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|+|.++++....      .+++.++..++.||+.|++|||+.   +|+||
T Consensus        83 ~~~l~~~i~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  124 (256)
T cd05113          83 NGCLLNYLREHGK------RFQPSQLLEMCKDVCEGMAYLESK---QFIHR  124 (256)
T ss_pred             CCcHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            9999999976431      478889999999999999999988   99997

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.71  E-value=8e-17  Score=151.28  Aligned_cols=118  Identities=22%  Similarity=0.273  Sum_probs=99.2

Q ss_pred             eCcCCceEEEEEEeC-CCCEEEEEEccccccc--cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCCh
Q 014778          296 LGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSV  372 (419)
Q Consensus       296 lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~GsL  372 (419)
                      ||+|+||+||++... +|+.||||.+......  ...+.+..|+++++.++|+||+++.+++......++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            699999999999964 7899999998543221  1235678899999999999999999999999999999999999999


Q ss_pred             hhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          373 ASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       373 ~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .+++.....   ....+++..+..++.||+.||+|||+.   +|+||
T Consensus        81 ~~~~~~~~~---~~~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~  121 (280)
T cd05608          81 RYHIYNVDE---ENPGFPEPRACFYTAQIISGLEHLHQR---RIIYR  121 (280)
T ss_pred             HHHHHhccc---cCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            988864321   112588899999999999999999999   99997

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.71  E-value=9.5e-17  Score=154.43  Aligned_cols=116  Identities=20%  Similarity=0.240  Sum_probs=100.5

Q ss_pred             CeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      ++||+|+||.||+++.. +++.||||.++....  ....+.+.+|..++..+ +||||+++++++.+.+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            46999999999999964 688999999964322  12234688899999888 799999999999999999999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|.+++....       .+++..+..++.|++.||+|||+.   +|+||
T Consensus        81 g~L~~~~~~~~-------~l~~~~~~~~~~qi~~~l~~lH~~---~ivH~  120 (329)
T cd05588          81 GDLMFHMQRQR-------KLPEEHARFYSAEISLALNFLHER---GIIYR  120 (329)
T ss_pred             CCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEec
Confidence            99999887553       588899999999999999999999   99998

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.71  E-value=6.4e-17  Score=155.78  Aligned_cols=123  Identities=16%  Similarity=0.204  Sum_probs=105.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...+.||+|+||.||+++.. +++.||+|.+....  .......+.+|..++..++|+||+++.+++.+.+..++||
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            36777899999999999999964 68899999985422  1222445888999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.++++....      .+++..+..++.|++.||+|||+.   +|+||
T Consensus        81 Ey~~gg~L~~~l~~~~~------~l~~~~~~~~~~qi~~~L~~lH~~---~iiHr  126 (331)
T cd05624          81 DYYVGGDLLTLLSKFED------RLPEDMARFYIAEMVLAIHSIHQL---HYVHR  126 (331)
T ss_pred             eCCCCCcHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            99999999999976321      477788888999999999999998   99997

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.71  E-value=4.8e-17  Score=157.74  Aligned_cols=121  Identities=19%  Similarity=0.248  Sum_probs=106.4

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      +|...+.||+|+||.||+|... +|+.||||+++....  ......+.+|++++..++|+||+++++++.+.+..++|||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (350)
T cd05573           2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVME   81 (350)
T ss_pred             CceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEEc
Confidence            5777899999999999999975 789999999964321  2334578999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++....       .+++..+..++.||+.||+|||+.   +|+||
T Consensus        82 ~~~~~~L~~~l~~~~-------~l~~~~~~~i~~qi~~aL~~LH~~---giiH~  125 (350)
T cd05573          82 YMPGGDLMNLLIRKD-------VFPEETARFYIAELVLALDSVHKL---GFIHR  125 (350)
T ss_pred             CCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            999999999998653       577888899999999999999998   99997

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.70  E-value=5.8e-17  Score=158.47  Aligned_cols=129  Identities=16%  Similarity=0.234  Sum_probs=109.5

Q ss_pred             HHHHHHHhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEec
Q 014778          280 LRELQVATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMT  356 (419)
Q Consensus       280 ~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~  356 (419)
                      +.++....++|...+.||+|+||.||++... +++.||+|.+....  .......+.+|+.+++.++||||+++++++.+
T Consensus        35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~  114 (371)
T cd05622          35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  114 (371)
T ss_pred             HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc
Confidence            3455566788999999999999999999975 68899999985322  12223457899999999999999999999999


Q ss_pred             CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          357 PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       357 ~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .+..++||||+++|+|.++++..        .++...+..++.||+.||+|||+.   +|+||
T Consensus       115 ~~~~~lv~Ey~~gg~L~~~~~~~--------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHr  166 (371)
T cd05622         115 DRYLYMVMEYMPGGDLVNLMSNY--------DVPEKWARFYTAEVVLALDAIHSM---GFIHR  166 (371)
T ss_pred             CCEEEEEEcCCCCCcHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHC---CEEeC
Confidence            99999999999999999998754        366777888999999999999999   99998

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.70  E-value=1.1e-17  Score=164.55  Aligned_cols=121  Identities=22%  Similarity=0.347  Sum_probs=104.9

Q ss_pred             CCCCCeeCcCCceEEEEEEeC--CCC--EEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          290 FSNRNILGRGGFGKVYKGRLT--DGS--LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~--~g~--~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      ....+.||+|.||.|++|.|.  .|+  .||||+++.+.......+|.+|+.+|-+++|+|+++|+|+..+ ...+||+|
T Consensus       112 i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV~E  190 (1039)
T KOG0199|consen  112 IKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMVFE  190 (1039)
T ss_pred             HHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHHhh
Confidence            344578999999999999984  454  6899999876655567899999999999999999999999998 67899999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++.|||.+.|++..     ...+-......++.|||.||.||..+   +.|||
T Consensus       191 LaplGSLldrLrka~-----~~~llv~~Lcdya~QiA~aM~YLesk---rlvHR  236 (1039)
T KOG0199|consen  191 LAPLGSLLDRLRKAK-----KAILLVSRLCDYAMQIAKAMQYLESK---RLVHR  236 (1039)
T ss_pred             hcccchHHHHHhhcc-----ccceeHHHHHHHHHHHHHHHHHHhhh---hhhhh
Confidence            999999999999722     12577788899999999999999999   99998

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.70  E-value=6.6e-17  Score=155.56  Aligned_cols=122  Identities=20%  Similarity=0.251  Sum_probs=105.9

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      +|...+.||+|+||.||++... +|+.||+|+++....  ....+.+.+|+.++..++|+||+++.+++.+.+..++|||
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (330)
T cd05601           2 DFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVME   81 (330)
T ss_pred             CceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEEC
Confidence            5777899999999999999964 789999999964322  2234568899999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.++++....      .+++..+..++.|++.||+|||+.   +|+||
T Consensus        82 ~~~~~~L~~~l~~~~~------~l~~~~~~~~~~qi~~aL~~lH~~---~i~H~  126 (330)
T cd05601          82 YQPGGDLLSLLNRYED------QFDEDMAQFYLAELVLAIHSVHQM---GYVHR  126 (330)
T ss_pred             CCCCCCHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeEcc
Confidence            9999999999986521      578888889999999999999999   99997

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.70  E-value=5.6e-17  Score=152.90  Aligned_cols=131  Identities=20%  Similarity=0.298  Sum_probs=106.0

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE  359 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  359 (419)
                      ..++|+..+.||+|+||.||+|..+      .+..||+|.++..........+.+|+.+++.++|+|++++++++...+.
T Consensus         4 ~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (288)
T cd05061           4 SREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQP   83 (288)
T ss_pred             cHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            4567888899999999999999753      2458999998644333334568899999999999999999999999999


Q ss_pred             eeEEeccCCCCChhhhhcCCcccc---CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVS---GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~---~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++||||+++|+|.++++......   ......++.+...++.|++.||.|||+.   +|+||
T Consensus        84 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~  143 (288)
T cd05061          84 TLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAK---KFVHR  143 (288)
T ss_pred             cEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCC
Confidence            999999999999999997532110   1112346667888999999999999988   99997

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.70  E-value=3.8e-17  Score=150.40  Aligned_cols=124  Identities=23%  Similarity=0.388  Sum_probs=103.3

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCC-CcceeEEEecCC------c
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRN-LLRLRGFCMTPT------E  359 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~n-iv~l~g~~~~~~------~  359 (419)
                      .|...+.||+|+||+||+|+. .+|+.||+|+++-... .+......+|+.++.+++|+| ||+|.+++...+      .
T Consensus        12 ~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~   91 (323)
T KOG0594|consen   12 DYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGK   91 (323)
T ss_pred             HHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccce
Confidence            455557799999999999995 5799999999975433 233456789999999999999 999999999877      6


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++|+||++. +|.+++.......   ..++...+..++.|+++||+|+|++   +|+||
T Consensus        92 l~lvfe~~d~-DL~~ymd~~~~~~---~g~~~~~ik~~m~Qll~gl~~~H~~---~IlHR  144 (323)
T KOG0594|consen   92 LYLVFEFLDR-DLKKYMDSLPKKP---QGLPPRLIKSFMRQLLRGLAFLHSH---GILHR  144 (323)
T ss_pred             EEEEEEeecc-cHHHHHHhccccc---cCCCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            7899999987 9999998754211   2455577889999999999999999   99998

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.70  E-value=5.6e-17  Score=151.91  Aligned_cols=131  Identities=20%  Similarity=0.309  Sum_probs=107.5

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE  359 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  359 (419)
                      .+++|+..+.||+|+||.||+|...      ++..||||++..........+|.+|+.+++.++|+||+++++++.....
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~   83 (277)
T cd05062           4 AREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQP   83 (277)
T ss_pred             cHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCC
Confidence            4567888899999999999998753      3467999998543332335579999999999999999999999999999


Q ss_pred             eeEEeccCCCCChhhhhcCCcccc---CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVS---GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~---~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++||||+++|+|.++++......   .....+++..+..++.|++.|++|||+.   +++||
T Consensus        84 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~vH~  143 (277)
T cd05062          84 TLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNAN---KFVHR  143 (277)
T ss_pred             eEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            999999999999999997543211   1122467788899999999999999988   99997

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.70  E-value=7.9e-17  Score=151.40  Aligned_cols=129  Identities=20%  Similarity=0.285  Sum_probs=106.0

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-----CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-----TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      ++|+..+.||+|+||.||+|..     .++..||+|.+..........+|.+|++++++++||||+++++++...+..++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l   84 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCM   84 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEE
Confidence            4566778999999999999984     24678999999644333334578999999999999999999999999999999


Q ss_pred             EeccCCCCChhhhhcCCccc----------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIV----------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~----------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||+++|+|.+++......          ......+++.+...++.|++.||+|||+.   +|+||
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~  148 (283)
T cd05090          85 LFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSH---FFVHK  148 (283)
T ss_pred             EEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhc---Ceehh
Confidence            99999999999998643210          01123578888999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.70  E-value=1.1e-16  Score=148.89  Aligned_cols=122  Identities=21%  Similarity=0.248  Sum_probs=105.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .++|...+.||+|+||.||+|+. .+++.||+|+++... ......+.+|+.++.+++|||++++++++...+..++|+|
T Consensus         8 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e   86 (267)
T cd06646           8 QHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEP-GDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICME   86 (267)
T ss_pred             hhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCc-cchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEe
Confidence            34677889999999999999996 578899999985332 2234568899999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.++++...       .+++.++..++.|++.|++|||+.   +|+||
T Consensus        87 ~~~~~~L~~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~  130 (267)
T cd06646          87 YCGGGSLQDIYHVTG-------PLSELQIAYVCRETLQGLAYLHSK---GKMHR  130 (267)
T ss_pred             CCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            999999999987543       477888899999999999999998   99997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.70  E-value=1e-16  Score=153.92  Aligned_cols=116  Identities=22%  Similarity=0.223  Sum_probs=100.2

Q ss_pred             CeeCcCCceEEEEEEe-CCCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCC
Q 014778          294 NILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNG  370 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~G  370 (419)
                      +.||+|+||.||++.. .+|+.||+|.++....  ......+.+|++++..++||||+++.+++...+..++||||+++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            4699999999999996 4789999999964321  222456788999999999999999999999999999999999999


Q ss_pred             ChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhh-ccccceecC
Q 014778          371 SVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKY-SCVSILLFC  419 (419)
Q Consensus       371 sL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~-~~~p~IiHR  419 (419)
                      +|.+++....       .+++.++..++.||+.||+|||+ .   +|+||
T Consensus        81 ~L~~~l~~~~-------~l~~~~~~~~~~qi~~aL~~lH~~~---~ivHr  120 (325)
T cd05594          81 ELFFHLSRER-------VFSEDRARFYGAEIVSALDYLHSEK---NVVYR  120 (325)
T ss_pred             cHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhcC---CEEec
Confidence            9999887654       57888899999999999999996 6   89997

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.70  E-value=4.6e-17  Score=150.93  Aligned_cols=125  Identities=22%  Similarity=0.326  Sum_probs=108.9

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      +..+|+..+.||+|+||.||+|...++..+|+|.+.... .....++.+|+.+++.++|+|++++++++...+..++|||
T Consensus         4 ~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   82 (261)
T cd05148           4 PREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDD-LLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITE   82 (261)
T ss_pred             cHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccc-hhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEe
Confidence            455677789999999999999998878999999986432 2235578999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.++++....     ..+++.++..++.|+++|++|||+.   +|+||
T Consensus        83 ~~~~~~L~~~~~~~~~-----~~~~~~~~~~~~~~i~~al~~lH~~---~i~h~  128 (261)
T cd05148          83 LMEKGSLLAFLRSPEG-----QVLPVASLIDMACQVAEGMAYLEEQ---NSIHR  128 (261)
T ss_pred             ecccCCHHHHHhcCCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            9999999999986432     2578888999999999999999998   89997

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.70  E-value=9.6e-17  Score=153.99  Aligned_cols=116  Identities=20%  Similarity=0.296  Sum_probs=99.5

Q ss_pred             CeeCcCCceEEEEEEe----CCCCEEEEEEcccccc---ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          294 NILGRGGFGKVYKGRL----TDGSLVAVKRLKEERT---QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +.||+|+||.||+++.    .+++.||||.++....   ......+.+|+.++..++||||+++++++..++..++||||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            5799999999999985    3578999999864321   12234678999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.+++....       .+.+..+..++.|++.||+|||+.   +|+||
T Consensus        82 ~~~~~L~~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~  124 (323)
T cd05584          82 LSGGELFMHLEREG-------IFMEDTACFYLSEISLALEHLHQQ---GIIYR  124 (323)
T ss_pred             CCCchHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            99999999997654       466777888999999999999999   99998

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.70  E-value=5.4e-17  Score=157.71  Aligned_cols=116  Identities=19%  Similarity=0.271  Sum_probs=97.7

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCC
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMV  368 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~  368 (419)
                      |...+.||+|+||.||+|+.. +|+.||||.+...........+.+|+++++.++|+||+++++++...+..++||||++
T Consensus        76 ~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  155 (353)
T PLN00034         76 LERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMD  155 (353)
T ss_pred             HhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecCC
Confidence            444578999999999999964 6899999998543333334678999999999999999999999999999999999999


Q ss_pred             CCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          369 NGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       369 ~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|+|.+..           ...+..+..++.||+.||+|||+.   +|+||
T Consensus       156 ~~~L~~~~-----------~~~~~~~~~i~~qi~~aL~~LH~~---~ivHr  192 (353)
T PLN00034        156 GGSLEGTH-----------IADEQFLADVARQILSGIAYLHRR---HIVHR  192 (353)
T ss_pred             CCcccccc-----------cCCHHHHHHHHHHHHHHHHHHHHC---CEeec
Confidence            99986532           234556678999999999999999   99998

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.70  E-value=1.3e-16  Score=152.04  Aligned_cols=122  Identities=20%  Similarity=0.353  Sum_probs=104.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +.|...+.||+|+||.||+|+.. +++.||+|+++..........+.+|+.++++++||||+++++++..++..++||||
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   85 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEY   85 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeC
Confidence            45777789999999999999964 68899999996544334455788999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++ +|.+++.....      .+++.++..++.|+++||+|||+.   +|+||
T Consensus        86 ~~~-~l~~~~~~~~~------~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~  128 (309)
T cd07872          86 LDK-DLKQYMDDCGN------IMSMHNVKIFLYQILRGLAYCHRR---KVLHR  128 (309)
T ss_pred             CCC-CHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            985 88888865431      467788889999999999999998   99998

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.70  E-value=8.8e-17  Score=149.86  Aligned_cols=122  Identities=24%  Similarity=0.418  Sum_probs=104.7

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CC---CEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DG---SLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g---~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      +|...+.||+|+||.||+|... ++   ..||||.++.........+|..|+.++++++|||++++.+++.+.+..++||
T Consensus         5 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   84 (269)
T cd05065           5 CVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIIT   84 (269)
T ss_pred             HeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEE
Confidence            4566789999999999999974 33   3699999865433334568999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.++++....      .+++.++..++.|++.|++|||+.   +++||
T Consensus        85 e~~~~~~L~~~l~~~~~------~~~~~~~~~i~~~l~~al~~lH~~---g~~H~  130 (269)
T cd05065          85 EFMENGALDSFLRQNDG------QFTVIQLVGMLRGIAAGMKYLSEM---NYVHR  130 (269)
T ss_pred             ecCCCCcHHHHHhhCCC------CCCHHHHHHHHHHHHHHHHHHHHC---CEeec
Confidence            99999999999976432      478889999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.70  E-value=9.5e-17  Score=151.24  Aligned_cols=130  Identities=23%  Similarity=0.356  Sum_probs=108.2

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCce
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  360 (419)
                      .++|...+.||+|+||.||++...      ++..||+|.++........++|.+|+.++++++|||++++++++...+..
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~   83 (288)
T cd05050           4 RNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPM   83 (288)
T ss_pred             hHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCcc
Confidence            457888899999999999999863      46789999986543333356799999999999999999999999999999


Q ss_pred             eEEeccCCCCChhhhhcCCccc---------------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIV---------------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~---------------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+||+++|+|.++++.....               ......+++.+++.++.|++.||+|||+.   +|+||
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~---~i~H~  154 (288)
T cd05050          84 CLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSER---KFVHR  154 (288)
T ss_pred             EEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            9999999999999999753210               11123478888999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.70  E-value=1.1e-16  Score=150.81  Aligned_cols=121  Identities=17%  Similarity=0.256  Sum_probs=102.3

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +|...+.||+|+||.||+++.. +++.||||+++.... ....+.+.+|++++..++||||+++++++...+..++||||
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (287)
T cd07848           2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEY   81 (287)
T ss_pred             CceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEec
Confidence            5777889999999999999975 688999999864322 22345788999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|.+..+.....       .+++..+..++.|++.||+|||+.   +|+||
T Consensus        82 ~~~~~l~~~~~~~~-------~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~  124 (287)
T cd07848          82 VEKNMLELLEEMPN-------GVPPEKVRSYIYQLIKAIHWCHKN---DIVHR  124 (287)
T ss_pred             CCCCHHHHHHhcCC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            99987765543322       577888899999999999999998   99997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.70  E-value=1.2e-16  Score=148.71  Aligned_cols=116  Identities=21%  Similarity=0.314  Sum_probs=97.8

Q ss_pred             CeeCcCCceEEEEEEeCC-------------CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCce
Q 014778          294 NILGRGGFGKVYKGRLTD-------------GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~~-------------g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  360 (419)
                      +.||+|+||.||+|++.+             ...||+|.+.... ......|.+|+.+++.++||||+++++++......
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~-~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~   79 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSH-RDISLAFFETASMMRQVSHKHIVLLYGVCVRDVEN   79 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhh-hhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCC
Confidence            368999999999998532             2258999885432 22345788999999999999999999999999999


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++|+|..+++....      .+++..+..++.||++||+|||+.   +|+||
T Consensus        80 ~lv~e~~~~~~l~~~~~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~  129 (262)
T cd05077          80 IMVEEFVEFGPLDLFMHRKSD------VLTTPWKFKVAKQLASALSYLEDK---DLVHG  129 (262)
T ss_pred             EEEEecccCCCHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHhhhC---CeECC
Confidence            999999999999999875432      477888899999999999999998   99998

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.70  E-value=1.3e-16  Score=150.05  Aligned_cols=122  Identities=20%  Similarity=0.369  Sum_probs=102.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-----CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecC--Cce
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP--TER  360 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-----~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~  360 (419)
                      .+|...+.||+|+||.||++.+.     ++..||+|++.... ....+.|.+|++++++++|||++++.+++...  ...
T Consensus         4 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~-~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   82 (284)
T cd05081           4 RHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHST-AEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL   82 (284)
T ss_pred             ccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCC-HHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCce
Confidence            35667789999999999999852     57899999985432 22345789999999999999999999987653  457


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+||+++|+|.+++.....      .+++..+..++.|++.||+|||+.   +|+||
T Consensus        83 ~lv~e~~~~~~L~~~l~~~~~------~l~~~~~~~~~~~l~~aL~~LH~~---~i~H~  132 (284)
T cd05081          83 RLVMEYLPYGSLRDYLQKHRE------RLDHRKLLLYASQICKGMEYLGSK---RYVHR  132 (284)
T ss_pred             EEEEEecCCCCHHHHHHhcCc------CCCHHHHHHHHHHHHHHHHHHHHC---Cceec
Confidence            899999999999999975431      478888999999999999999999   99997

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.69  E-value=1.3e-16  Score=148.64  Aligned_cols=124  Identities=23%  Similarity=0.426  Sum_probs=106.1

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CC---CEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DG---SLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g---~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      .++|+..+.||+|+||.||+|... ++   ..+|+|.++........++|.+|++++++++|+|++++.+++...+..++
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMI   83 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEE
Confidence            346777899999999999999974 33   37999998654333335679999999999999999999999999999999


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||+++|+|.++++....      .+++.++..++.|++.|++|||+.   +|+||
T Consensus        84 v~e~~~~~~L~~~~~~~~~------~~~~~~~~~~~~~l~~al~~lH~~---~i~H~  131 (268)
T cd05063          84 ITEYMENGALDKYLRDHDG------EFSSYQLVGMLRGIAAGMKYLSDM---NYVHR  131 (268)
T ss_pred             EEEcCCCCCHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            9999999999999975432      578888999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.69  E-value=1.3e-16  Score=151.76  Aligned_cols=129  Identities=22%  Similarity=0.416  Sum_probs=106.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCC--EEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGS--LVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~--~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  363 (419)
                      ++|+..+.||+|+||.||+|... ++.  .+|+|.++..........|.+|++++.++ +|+||+++++++...+..++|
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv   86 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   86 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEE
Confidence            46777899999999999999964 454  46888875433333456789999999999 899999999999999999999


Q ss_pred             eccCCCCChhhhhcCCcccc---------CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVS---------GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~---------~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||+++|+|.++++......         .....+++.++..++.|++.|++|||+.   +|+||
T Consensus        87 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---gi~H~  148 (303)
T cd05088          87 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHR  148 (303)
T ss_pred             EEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhC---Ccccc
Confidence            99999999999998653211         1123578889999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.69  E-value=1.5e-16  Score=148.40  Aligned_cols=119  Identities=21%  Similarity=0.282  Sum_probs=97.3

Q ss_pred             eeCcCCceEEEEEEeCCC---CEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCC
Q 014778          295 ILGRGGFGKVYKGRLTDG---SLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGS  371 (419)
Q Consensus       295 ~lG~G~fg~Vy~~~~~~g---~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~Gs  371 (419)
                      .||+|+||.||+|...++   ..+++|.++........+.|.+|+.+++.++|||+++++++|......++||||+++|+
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   81 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGD   81 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCc
Confidence            589999999999985433   35667776543333345689999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          372 VASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       372 L~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |.++++.....   ....++.....++.||++||+|||+.   +|+||
T Consensus        82 L~~~l~~~~~~---~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~  123 (268)
T cd05086          82 LKSYLSQEQWH---RRNSQLLLLQRMACEIAAGVTHMHKH---NFLHS  123 (268)
T ss_pred             HHHHHHhhhcc---cccccHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            99999864321   11356667778999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.69  E-value=1.8e-16  Score=151.68  Aligned_cols=116  Identities=21%  Similarity=0.311  Sum_probs=98.6

Q ss_pred             CeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhc-CCCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISM-AVHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~-l~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      +.||+|+||.||+|+.. +++.||||.++....  ......+..|..++.. .+||||+++++++.+.+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            46999999999999975 578999999964321  2234457778888876 5999999999999999999999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|.+++....       .+++.++..++.|++.||+|||+.   +|+||
T Consensus        81 g~L~~~l~~~~-------~~~~~~~~~~~~qi~~al~~LH~~---~ivHr  120 (316)
T cd05619          81 GDLMFHIQSCH-------KFDLPRATFYAAEIICGLQFLHSK---GIVYR  120 (316)
T ss_pred             CcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeEeC
Confidence            99999997643       577888889999999999999999   99998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.69  E-value=1.4e-16  Score=147.89  Aligned_cols=124  Identities=21%  Similarity=0.306  Sum_probs=108.5

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      ..++|...+.||+|+||.||+|...+++.||+|.++...  ...++|.+|+.++++++|+|++++++++...+..++|||
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (261)
T cd05068           4 DRTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGT--MDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTE   81 (261)
T ss_pred             chhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCc--ccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeee
Confidence            345678889999999999999998777889999986432  235679999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++....     ...+++.+...++.|++.|+.|||+.   +|+||
T Consensus        82 ~~~~~~L~~~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  127 (261)
T cd05068          82 LMKYGSLLEYLQGGA-----GRALKLPQLIDMAAQVASGMAYLEAQ---NYIHR  127 (261)
T ss_pred             cccCCcHHHHHhccC-----CCCCCHHHHHHHHHHHHHHHHHHHhC---Ceeec
Confidence            999999999997643     22578889999999999999999998   89997

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.69  E-value=7.1e-17  Score=156.25  Aligned_cols=131  Identities=22%  Similarity=0.321  Sum_probs=104.4

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEe------CCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecC-
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRL------TDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTP-  357 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~-  357 (419)
                      +.++|...+.||+|+||.||+|..      .+++.||||.++..........+.+|+.++.++ +|+||++++++|... 
T Consensus         5 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~   84 (343)
T cd05103           5 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG   84 (343)
T ss_pred             chhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCC
Confidence            345688889999999999999973      356799999996543333345788999999999 689999999988765 


Q ss_pred             CceeEEeccCCCCChhhhhcCCcccc------------------------------------------------------
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIVS------------------------------------------------------  383 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~~------------------------------------------------------  383 (419)
                      ...++|+||+++|+|.++++......                                                      
T Consensus        85 ~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (343)
T cd05103          85 GPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEE  164 (343)
T ss_pred             CceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhh
Confidence            45789999999999999997532100                                                      


Q ss_pred             ------CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          384 ------GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       384 ------~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                            .....+++.++..++.||++||+|||+.   +|+||
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~  203 (343)
T cd05103         165 EAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASR---KCIHR  203 (343)
T ss_pred             hhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence                  0012467888899999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.69  E-value=1.3e-16  Score=153.27  Aligned_cols=119  Identities=22%  Similarity=0.297  Sum_probs=100.9

Q ss_pred             CCeeCcC--CceEEEEEEe-CCCCEEEEEEccccccc-cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCC
Q 014778          293 RNILGRG--GFGKVYKGRL-TDGSLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMV  368 (419)
Q Consensus       293 ~~~lG~G--~fg~Vy~~~~-~~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~  368 (419)
                      .++||+|  +|++||++.. .+|+.||+|+++..... ...+.+.+|+++++.++||||+++++++..++..++|+||++
T Consensus         3 ~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~   82 (327)
T cd08227           3 LTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMA   82 (327)
T ss_pred             hhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccC
Confidence            4689999  6889999996 57899999999644322 223457789999999999999999999999999999999999


Q ss_pred             CCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          369 NGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       369 ~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|+|.+++.....     ..+++..+..++.|++.||+|||+.   +|+||
T Consensus        83 ~~~l~~~~~~~~~-----~~l~~~~~~~i~~qi~~~L~~LH~~---~iiH~  125 (327)
T cd08227          83 YGSAKDLICTHFM-----DGMSELAIAYILQGVLKALDYIHHM---GYVHR  125 (327)
T ss_pred             CCcHHHHHHhhcc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CEecC
Confidence            9999999865321     1478888999999999999999998   99997

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.69  E-value=1.6e-16  Score=152.45  Aligned_cols=119  Identities=21%  Similarity=0.317  Sum_probs=99.4

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHH---hcCCCCCCcceeEEEecCCceeEE
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMI---SMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l---~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      |...+.||+|+||.||+|... +++.||||+++...  .....+.+.+|++++   +.++||||+++++++...+..++|
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            445688999999999999964 68999999996432  112234566676554   577899999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|..+++..        .+++.++..++.|++.||+|||+.   +|+||
T Consensus        81 ~E~~~~~~L~~~~~~~--------~l~~~~~~~~~~qi~~al~~lH~~---~ivHr  125 (324)
T cd05589          81 MEYAAGGDLMMHIHTD--------VFSEPRAVFYAACVVLGLQYLHEN---KIVYR  125 (324)
T ss_pred             EcCCCCCcHHHHhhcC--------CCCHHHHHHHHHHHHHHHHHHHhC---CeEec
Confidence            9999999999888653        478889999999999999999998   99998

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.69  E-value=1.6e-16  Score=147.00  Aligned_cols=120  Identities=22%  Similarity=0.340  Sum_probs=104.9

Q ss_pred             CCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCC
Q 014778          289 NFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMV  368 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~  368 (419)
                      +|+..+.||+|+||.||++..+++..+|+|.+....  ....+|.+|++++++++|+||+++++++...+..++|+||++
T Consensus         5 ~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~   82 (256)
T cd05059           5 ELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREGA--MSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMA   82 (256)
T ss_pred             HcchhhhhccCCCceEEEeEecCCccEEEEEeccCC--CCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCC
Confidence            466678999999999999998777789999985322  234579999999999999999999999999999999999999


Q ss_pred             CCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          369 NGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       369 ~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|+|.++++....      .+++..+..++.|++.|++|||+.   +|+||
T Consensus        83 ~~~L~~~l~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~  124 (256)
T cd05059          83 NGCLLNYLRERKG------KLGTEWLLDMCSDVCEAMEYLESN---GFIHR  124 (256)
T ss_pred             CCCHHHHHHhccc------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            9999999976432      578888999999999999999998   89997

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.69  E-value=1.3e-16  Score=151.60  Aligned_cols=126  Identities=24%  Similarity=0.332  Sum_probs=106.3

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEe------CCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCC
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRL------TDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPT  358 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  358 (419)
                      ..++|...+.||+|+||.||++..      .++..||||+++........+.+.+|+.+++++ +|+||+++++++...+
T Consensus        33 ~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  112 (302)
T cd05055          33 PRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGG  112 (302)
T ss_pred             cHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCC
Confidence            345688889999999999999974      134589999986543333345799999999999 7999999999999999


Q ss_pred             ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 ~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..++|+||+++|+|.++++....     ..+++.+...++.|++.|++|||+.   +|+||
T Consensus       113 ~~~lv~e~~~~~~L~~~i~~~~~-----~~l~~~~~~~i~~~i~~~l~~lH~~---~ivH~  165 (302)
T cd05055         113 PILVITEYCCYGDLLNFLRRKRE-----SFLTLEDLLSFSYQVAKGMAFLASK---NCIHR  165 (302)
T ss_pred             ceEEEEEcCCCCcHHHHHHhCCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---Ceehh
Confidence            99999999999999999976431     1378899999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.69  E-value=1.3e-16  Score=149.57  Aligned_cols=129  Identities=23%  Similarity=0.401  Sum_probs=107.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCcee
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  361 (419)
                      ++|...+.||+|+||.||+|...      ++..||||.++........+.|.+|++++.+++|+|++++++++......+
T Consensus         5 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~   84 (280)
T cd05049           5 DTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPI   84 (280)
T ss_pred             HHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeE
Confidence            45667789999999999999863      247899999965433334568999999999999999999999999999999


Q ss_pred             EEeccCCCCChhhhhcCCccc-------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIV-------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~-------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++|+|.++++.....       ......+++.++..++.|++.|+.|||+.   +|+||
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~h~  146 (280)
T cd05049          85 MVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQ---HFVHR  146 (280)
T ss_pred             EEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---Ceecc
Confidence            999999999999999864321       11223578889999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.69  E-value=1.9e-16  Score=152.29  Aligned_cols=116  Identities=19%  Similarity=0.235  Sum_probs=99.3

Q ss_pred             CeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      +.||+|+||.||++... +++.||+|.++....  ....+.+.+|+.++.++ +||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            46999999999999964 688999999964321  12234578898888776 899999999999999999999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|.+++....       .+++..+..++.|++.||+|||+.   +|+||
T Consensus        81 ~~L~~~~~~~~-------~l~~~~~~~i~~qi~~~l~~lH~~---~ivH~  120 (329)
T cd05618          81 GDLMFHMQRQR-------KLPEEHARFYSAEISLALNYLHER---GIIYR  120 (329)
T ss_pred             CCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeeeC
Confidence            99999887653       578888999999999999999999   99998

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.69  E-value=1.5e-16  Score=153.28  Aligned_cols=123  Identities=15%  Similarity=0.209  Sum_probs=104.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...+.||+|+||.||+++.. +++.+|+|.+....  .......|.+|+.++..++|+||+++.+++.+.+..++||
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            35777899999999999999975 57889999985322  1222345889999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++++...      .+++..+..++.|++.||+|||+.   +|+||
T Consensus        81 ey~~~g~L~~~l~~~~~------~l~~~~~~~~~~qi~~al~~lH~~---~iiHr  126 (332)
T cd05623          81 DYYVGGDLLTLLSKFED------RLPEDMARFYLAEMVIAIDSVHQL---HYVHR  126 (332)
T ss_pred             eccCCCcHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeEec
Confidence            99999999999976321      477788888999999999999998   99998

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.69  E-value=1.9e-16  Score=151.78  Aligned_cols=116  Identities=21%  Similarity=0.259  Sum_probs=99.3

Q ss_pred             CeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      ++||+|+||.||+|+.. +++.||||+++....  ....+.+..|.+++..+ +||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            46899999999999974 588999999864321  22345678899988865 899999999999999999999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|..++....       .+++..+..++.|++.||+|||+.   +|+||
T Consensus        81 ~~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHr  120 (321)
T cd05591          81 GDLMFQIQRSR-------KFDEPRSRFYAAEVTLALMFLHRH---GVIYR  120 (321)
T ss_pred             CcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            99999987654       577888899999999999999999   99998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.69  E-value=1.8e-16  Score=151.91  Aligned_cols=116  Identities=27%  Similarity=0.348  Sum_probs=99.6

Q ss_pred             CeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      +.||+|+||.||+|+.. +++.||||.++...  .....+.+..|.+++... +||||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999974 68899999986432  122345678888888876 699999999999999999999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|.+++....       .+++..+..++.|++.||+|||+.   +|+||
T Consensus        81 g~L~~~i~~~~-------~l~~~~~~~~~~ql~~~L~~lH~~---~ivH~  120 (320)
T cd05590          81 GDLMFHIQKSR-------RFDEARARFYAAEITSALMFLHDK---GIIYR  120 (320)
T ss_pred             chHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeC
Confidence            99999987654       578888899999999999999999   99998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.69  E-value=1.8e-16  Score=147.31  Aligned_cols=120  Identities=21%  Similarity=0.448  Sum_probs=103.7

Q ss_pred             CCCCCeeCcCCceEEEEEEeCCCCEEEEEEcccccc-----ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          290 FSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERT-----QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~-----~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      |...+.||+|+||.||+|...+|+.+|||.++....     ......+.+|++++++++|+||+++.+++.+.+..++|+
T Consensus         2 ~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   81 (265)
T cd06631           2 WTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFM   81 (265)
T ss_pred             ccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEE
Confidence            566789999999999999988899999999853321     111346889999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++.+..       .+++..+..++.|++.||+|||+.   +|+||
T Consensus        82 e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~  126 (265)
T cd06631          82 EFVPGGSISSILNRFG-------PLPEPVFCKYTKQILDGVAYLHNN---CVVHR  126 (265)
T ss_pred             ecCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            9999999999997643       467888889999999999999998   89996

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.69  E-value=2.1e-16  Score=151.17  Aligned_cols=116  Identities=20%  Similarity=0.265  Sum_probs=97.3

Q ss_pred             CeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhc-CCCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISM-AVHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~-l~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      ++||+|+||.||+|... +++.||||.++....  ....+.+..|.+++.. .+||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999974 688999999964321  2233456677777765 5899999999999999999999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|.+++....       .+++.++..++.|++.||+|||+.   +|+||
T Consensus        81 g~L~~~~~~~~-------~~~~~~~~~~~~qi~~al~~LH~~---~ivH~  120 (316)
T cd05592          81 GDLMFHIQSSG-------RFDEARARFYAAEIICGLQFLHKK---GIIYR  120 (316)
T ss_pred             CcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CEEeC
Confidence            99999987653       577888889999999999999998   99998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.69  E-value=1.9e-16  Score=151.98  Aligned_cols=121  Identities=18%  Similarity=0.252  Sum_probs=102.3

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCC-CCcceeEEEecCCceeEEe
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHR-NLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~-niv~l~g~~~~~~~~~lv~  364 (419)
                      +|...+.||+|+||.||+|+.. +++.||||+++...  .....+.+..|.+++..++|+ +|+++.+++...+..++||
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            4667789999999999999965 57899999996432  122345688999999999765 5788889999899999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus        81 E~~~~g~L~~~~~~~~-------~~~~~~~~~~~~qi~~al~~lH~~---~ivH~  125 (324)
T cd05587          81 EYVNGGDLMYHIQQVG-------KFKEPHAVFYAAEIAIGLFFLHSK---GIIYR  125 (324)
T ss_pred             cCCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEec
Confidence            9999999999987654       577888999999999999999998   99998

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.69  E-value=1.3e-16  Score=150.00  Aligned_cols=123  Identities=14%  Similarity=0.166  Sum_probs=105.0

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ++|+..+.||+|+||+||++.. .+|+.||+|.+.........+.+.+|++++..++||||+++++++...+..++||||
T Consensus         5 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (284)
T cd06620           5 EDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEF   84 (284)
T ss_pred             HHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEec
Confidence            3566668899999999999996 468899999886443333456899999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.++++...       .+++.....++.|+++|+.|||+.  .+|+||
T Consensus        85 ~~~~~L~~~~~~~~-------~~~~~~~~~~~~~i~~~l~~LH~~--~~i~H~  128 (284)
T cd06620          85 MDCGSLDRIYKKGG-------PIPVEILGKIAVAVVEGLTYLYNV--HRIMHR  128 (284)
T ss_pred             CCCCCHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHHHh--cCeecc
Confidence            99999999987643       477888889999999999999963  179997

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.69  E-value=1.5e-16  Score=152.90  Aligned_cols=124  Identities=15%  Similarity=0.206  Sum_probs=110.5

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      ..++|+...+||+|+||.||.|+- .+|..+|+|+++...  .....+....|-.+|...++|+||+|+..+.+.+..||
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYL  218 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYL  218 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEE
Confidence            567899999999999999999995 479999999996432  22334567889999999999999999999999999999


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||+||||+..+|.+..       .+++..+..++.+.+-|++-||..   ++|||
T Consensus       219 iMEylPGGD~mTLL~~~~-------~L~e~~arfYiaE~vlAI~~iH~~---gyIHR  265 (550)
T KOG0605|consen  219 IMEYLPGGDMMTLLMRKD-------TLTEDWARFYIAETVLAIESIHQL---GYIHR  265 (550)
T ss_pred             EEEecCCccHHHHHHhcC-------cCchHHHHHHHHHHHHHHHHHHHc---Ccccc
Confidence            999999999999999876       688888999999999999999999   99998

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.69  E-value=2.5e-16  Score=151.13  Aligned_cols=116  Identities=19%  Similarity=0.278  Sum_probs=97.2

Q ss_pred             CeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHH-HHhcCCCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVE-MISMAVHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~-~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      +.||+|+||+||+|... +|+.||+|.+.....  ....+++..|.. +++.++||||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            46999999999999974 789999999964321  122345556655 56789999999999999999999999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|.+++....       .+++..+..++.||+.||+|||+.   +|+||
T Consensus        81 g~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---givH~  120 (323)
T cd05575          81 GELFFHLQRER-------SFPEPRARFYAAEIASALGYLHSL---NIIYR  120 (323)
T ss_pred             CCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeC
Confidence            99999987654       577888889999999999999999   99998

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.69  E-value=2.1e-17  Score=152.14  Aligned_cols=119  Identities=20%  Similarity=0.324  Sum_probs=94.8

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC-----ceeE
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT-----ERLL  362 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----~~~l  362 (419)
                      .|...+++|.|+||.||+|.+. +++.||||+...+...     -.+|+++|+.++|||||+|.-++....     ...+
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r~-----knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnl   99 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKRY-----KNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNL   99 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCCc-----CcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHH
Confidence            3555689999999999999974 5789999998654332     247999999999999999998886632     2348


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+||||. +|.+.++...   .....++..++.-++.|+.+||.|||+.   +|+||
T Consensus       100 VleymP~-tL~~~~r~~~---~~~~~mp~~~iKLYt~Qlfrgl~yLh~~---~IcHR  149 (364)
T KOG0658|consen  100 VLEYMPE-TLYRVIRHYT---RANQRMPLLEIKLYTYQLFRGLAYLHSH---GICHR  149 (364)
T ss_pred             HHHhchH-HHHHHHHHHh---hcCCCCceeeeHHHHHHHHHHHHHHHhc---CcccC
Confidence            9999998 9999998521   1112566667777899999999999998   99998

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.68  E-value=2.2e-16  Score=148.98  Aligned_cols=128  Identities=25%  Similarity=0.313  Sum_probs=104.7

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      +|...+.||+|+||.||+|+..      ....+|+|.+..........++.+|+.+++.++||||++++++|...+..++
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLL   80 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEE
Confidence            3566789999999999999852      2357899988644333334679999999999999999999999999999999


Q ss_pred             EeccCCCCChhhhhcCCccc-----------------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIV-----------------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~-----------------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||+++|+|.+++......                 ......+++..++.++.|++.|++|||+.   +|+||
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---~ivH~  151 (290)
T cd05045          81 IVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEM---KLVHR  151 (290)
T ss_pred             EEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHC---Ceehh
Confidence            99999999999998753210                 11223578889999999999999999988   99997

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.68  E-value=2.1e-16  Score=148.62  Aligned_cols=122  Identities=22%  Similarity=0.326  Sum_probs=103.7

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-----CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecC--Ccee
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-----TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP--TERL  361 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~  361 (419)
                      .|...+.||+|+||.||.+.+     .++..||+|.++..........|.+|+.+++.++|||++++.+++...  ...+
T Consensus         5 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05079           5 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIK   84 (284)
T ss_pred             hhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceE
Confidence            456678999999999999985     257789999996543333456799999999999999999999999875  5678


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++|+|.+++.....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus        85 lv~e~~~g~~L~~~l~~~~~------~~~~~~~~~i~~~i~~aL~~lH~~---gi~H~  133 (284)
T cd05079          85 LIMEFLPSGSLKEYLPRNKN------KINLKQQLKYAVQICKGMDYLGSR---QYVHR  133 (284)
T ss_pred             EEEEccCCCCHHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            99999999999999875421      478889999999999999999999   99997

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.68  E-value=1.6e-16  Score=150.38  Aligned_cols=129  Identities=22%  Similarity=0.313  Sum_probs=105.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCC---------------CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTD---------------GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG  352 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~---------------g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g  352 (419)
                      .+|...+.||+|+||.||++...+               ...||+|.++..........|.+|++++++++|+|++++++
T Consensus         5 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~   84 (295)
T cd05097           5 QQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLG   84 (295)
T ss_pred             HhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEE
Confidence            467778899999999999987532               23589999965433333557999999999999999999999


Q ss_pred             EEecCCceeEEeccCCCCChhhhhcCCcccc-----CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          353 FCMTPTERLLVYPFMVNGSVASCLRGMFIVS-----GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       353 ~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~~-----~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++...+..++||||+++|+|.+++.......     .....+.+..+..++.|+++||+|||+.   +|+||
T Consensus        85 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~  153 (295)
T cd05097          85 VCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASL---NFVHR  153 (295)
T ss_pred             EEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhc---Ceecc
Confidence            9999999999999999999999997542110     1112367888999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.68  E-value=2e-16  Score=147.83  Aligned_cols=129  Identities=22%  Similarity=0.373  Sum_probs=107.0

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCcee
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  361 (419)
                      ++|.....||+|+||.||+|+..      +.+.||+|.+.........++|.+|++++++++|+|++++++++.+.+..+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   84 (275)
T cd05046           5 SNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHY   84 (275)
T ss_pred             HhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcce
Confidence            56778899999999999999963      346799998854332223467999999999999999999999999989999


Q ss_pred             EEeccCCCCChhhhhcCCcccc--CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVS--GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~--~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++|+|.++++......  .....+++.++..++.|++.|++|||+.   +|+||
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~  141 (275)
T cd05046          85 MILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNA---RFVHR  141 (275)
T ss_pred             EEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhc---CcccC
Confidence            9999999999999998654211  1122578999999999999999999998   89997

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.68  E-value=2.8e-16  Score=146.02  Aligned_cols=126  Identities=17%  Similarity=0.261  Sum_probs=107.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|+..+.||+|+||.||+|... +|+.||+|.++...  .....+.+.+|++++++++|+|++++++++...+..++||
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            46788899999999999999975 79999999885322  2223567999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++.....   ....+++.++..++.|+++|+.|||+.   +|+||
T Consensus        82 e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~  130 (267)
T cd08224          82 ELADAGDLSRMIKHFKK---QKRLIPERTIWKYFVQLCSALEHMHSK---RIMHR  130 (267)
T ss_pred             ecCCCCCHHHHHHHhcc---cCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecC
Confidence            99999999999875321   112578888999999999999999998   99997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.68  E-value=1.7e-16  Score=153.56  Aligned_cols=122  Identities=20%  Similarity=0.326  Sum_probs=108.1

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccccc--CHHHHHHHHHHHhcCC-CCCCcceeEEEecCCceeE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQG--GELQFQTEVEMISMAV-HRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~--~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~l  362 (419)
                      .+.|...+.||+|.||.||+++.+ +|+.+|+|.+.......  ......+|+.+|.++. |||||.+.+.+.+....++
T Consensus        34 ~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~l  113 (382)
T KOG0032|consen   34 KEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYL  113 (382)
T ss_pred             cccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEE
Confidence            345666789999999999999975 59999999996544322  3468999999999998 9999999999999999999


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||++.+|+|.+.+...        .+++.++..++.||+.+++|||+.   +|+||
T Consensus       114 vmEL~~GGeLfd~i~~~--------~~sE~da~~~~~~il~av~~lH~~---gvvHr  159 (382)
T KOG0032|consen  114 VMELCEGGELFDRIVKK--------HYSERDAAGIIRQILEAVKYLHSL---GVVHR  159 (382)
T ss_pred             EEEecCCchHHHHHHHc--------cCCHHHHHHHHHHHHHHHHHHHhC---Cceec
Confidence            99999999999999865        388999999999999999999998   99998

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.68  E-value=2.6e-16  Score=150.84  Aligned_cols=116  Identities=19%  Similarity=0.270  Sum_probs=96.6

Q ss_pred             CeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHH-HHhcCCCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVE-MISMAVHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~-~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      ++||+|+||.||+|+.. +|+.||+|.+.....  ......+.+|.. +++.++||||+++++++.+.+..++||||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999974 688999999853321  122345666654 57889999999999999999999999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|.+++....       .+.+.++..++.||++||+|||+.   +|+||
T Consensus        81 ~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~L~~lH~~---~ivH~  120 (321)
T cd05603          81 GELFFHLQRER-------CFLEPRARFYAAEVASAIGYLHSL---NIIYR  120 (321)
T ss_pred             CCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEec
Confidence            99999887543       467778888999999999999998   99997

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.68  E-value=2e-16  Score=146.34  Aligned_cols=114  Identities=25%  Similarity=0.413  Sum_probs=97.1

Q ss_pred             CeeCcCCceEEEEEEeCC-C----------CEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          294 NILGRGGFGKVYKGRLTD-G----------SLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~~-g----------~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      +.||+|+||.||+|...+ +          ..+++|.+......  ...|.+|+.++++++|+|+++++|++.. +..++
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~--~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~l   77 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD--SLAFFETASLMSQLSHKHLVKLYGVCVR-DENIM   77 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh--HHHHHHHHHHHHcCCCcchhheeeEEec-CCcEE
Confidence            468999999999999753 3          25788887543222  5689999999999999999999999988 77899


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+||+++|+|.++++....      .+++..+..++.||+.||+|||+.   +|+||
T Consensus        78 v~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~  125 (259)
T cd05037          78 VEEYVKFGPLDVFLHREKN------NVSLHWKLDVAKQLASALHYLEDK---KLVHG  125 (259)
T ss_pred             EEEcCCCCcHHHHHHhhcc------CCCHHHHHHHHHHHHHHHHHHhhC---Ceecc
Confidence            9999999999999986542      477888899999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.68  E-value=2.5e-16  Score=146.03  Aligned_cols=115  Identities=21%  Similarity=0.291  Sum_probs=97.3

Q ss_pred             eeCcCCceEEEEEEeC---CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCC
Q 014778          295 ILGRGGFGKVYKGRLT---DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGS  371 (419)
Q Consensus       295 ~lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~Gs  371 (419)
                      .||+|+||.||+|.+.   ++..||+|.+.........+.|.+|+.++++++|+||++++++|. .+..++||||+++|+
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~~~~   80 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEMASGGP   80 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEeCCCCC
Confidence            3899999999999863   355799999965433333567999999999999999999999885 456899999999999


Q ss_pred             hhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          372 VASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       372 L~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |.+++.....      .+++.++..++.|++.||+|||++   +|+||
T Consensus        81 L~~~l~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  119 (257)
T cd05115          81 LNKFLSGKKD------EITVSNVVELMHQVSMGMKYLEGK---NFVHR  119 (257)
T ss_pred             HHHHHHhCCC------CCCHHHHHHHHHHHHHHHHHHHhc---Ceeec
Confidence            9999975432      578889999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.68  E-value=2.5e-16  Score=147.88  Aligned_cols=129  Identities=25%  Similarity=0.387  Sum_probs=106.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCC------CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCcee
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTD------GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~------g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  361 (419)
                      ++|+..+.||+|+||.||+|....      ...||+|.++.........+|.+|+.++.+++||||+++++++...+..+
T Consensus         5 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T cd05048           5 SAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTC   84 (283)
T ss_pred             HHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceE
Confidence            457777899999999999998632      25799999964433333567999999999999999999999999999999


Q ss_pred             EEeccCCCCChhhhhcCCcccc---------CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVS---------GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~---------~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|||+++|+|.+++.......         .....+++.+...++.|++.||+|||+.   +|+||
T Consensus        85 ~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~---~i~H~  148 (283)
T cd05048          85 MLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSH---HFVHR  148 (283)
T ss_pred             EEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            9999999999999997642111         1113578888999999999999999999   99997

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.68  E-value=2.3e-16  Score=146.74  Aligned_cols=126  Identities=15%  Similarity=0.231  Sum_probs=105.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...+.||+|+||.||+|+. .+++.||||.++...  .......|.+|++++++++|||++++++++.+.+..++|+
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            4677889999999999999996 478999999875322  2222456899999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++.....   ....+++..+..++.|+++||+|||+.   +|+||
T Consensus        82 e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~  130 (267)
T cd08228          82 ELADAGDLSQMIKYFKK---QKRLIPERTVWKYFVQLCSAVEHMHSR---RVMHR  130 (267)
T ss_pred             EecCCCcHHHHHHHhhh---ccCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCC
Confidence            99999999998864321   112477888899999999999999998   99997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.68  E-value=2.9e-16  Score=150.30  Aligned_cols=116  Identities=22%  Similarity=0.300  Sum_probs=100.1

Q ss_pred             CeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      +.||+|+||.||++... +++.||||.++...  .......+.+|.+++..+ +||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            46999999999999975 58899999996432  122345678899998887 799999999999999999999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|.+++....       .+++.++..++.|++.||.|||+.   +|+||
T Consensus        81 ~~L~~~~~~~~-------~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~  120 (318)
T cd05570          81 GDLMFHIQRSG-------RFDEPRARFYAAEIVLGLQFLHER---GIIYR  120 (318)
T ss_pred             CCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeEcc
Confidence            99999887654       588889999999999999999998   99997

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.68  E-value=2.2e-16  Score=149.49  Aligned_cols=130  Identities=22%  Similarity=0.324  Sum_probs=107.0

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-----------------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcc
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-----------------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR  349 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-----------------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~  349 (419)
                      .++|+..+.||+|+||.||++...                 ++..||+|.++.........+|.+|+.+++.++|+||++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~   83 (296)
T cd05095           4 RKRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIR   83 (296)
T ss_pred             hhhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcce
Confidence            346788899999999999998532                 234799999965433334568999999999999999999


Q ss_pred             eeEEEecCCceeEEeccCCCCChhhhhcCCccc----cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          350 LRGFCMTPTERLLVYPFMVNGSVASCLRGMFIV----SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       350 l~g~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~----~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++++...+..++||||+++|+|.+++......    ......+++.++..++.|++.|++|||+.   +|+||
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~  154 (296)
T cd05095          84 LLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSL---NFVHR  154 (296)
T ss_pred             EEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            999999999999999999999999999864321    11123577888999999999999999999   89997

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.68  E-value=2.3e-16  Score=149.88  Aligned_cols=130  Identities=20%  Similarity=0.316  Sum_probs=106.9

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC--------CCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecC
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT--------DGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTP  357 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  357 (419)
                      .++|...+.||+|+||.||+++..        ++..||+|.++........+++.+|+.++..+ +||||+++++++...
T Consensus        14 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   93 (304)
T cd05101          14 RDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD   93 (304)
T ss_pred             HHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecC
Confidence            456777799999999999999741        24579999986443333456799999999999 899999999999999


Q ss_pred             CceeEEeccCCCCChhhhhcCCcccc---------CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIVS---------GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~~---------~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ...++||||+++|+|.+++.......         .....+++.++..++.||++||+|||++   +|+||
T Consensus        94 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~---givH~  161 (304)
T cd05101          94 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQ---KCIHR  161 (304)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            99999999999999999998643210         1123578888999999999999999999   99997

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.68  E-value=2.7e-16  Score=150.95  Aligned_cols=116  Identities=20%  Similarity=0.263  Sum_probs=97.5

Q ss_pred             CeeCcCCceEEEEEEe-CCCCEEEEEEcccccc--ccCHHHHHHHHH-HHhcCCCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT--QGGELQFQTEVE-MISMAVHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~f~~E~~-~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      +.||+|+||+||++.. .+|+.||+|++.....  ......+..|.. +++.++||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            4689999999999996 4789999999854321  122345666665 46789999999999999999999999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|..++....       .+++.++..++.||++||+|||+.   +|+||
T Consensus        81 ~~L~~~l~~~~-------~~~~~~~~~~~~qi~~al~~lH~~---givH~  120 (325)
T cd05604          81 GELFFHLQRER-------SFPEPRARFYAAEIASALGYLHSI---NIVYR  120 (325)
T ss_pred             CCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            99999887653       578888999999999999999999   99998

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.68  E-value=2.6e-16  Score=145.98  Aligned_cols=122  Identities=20%  Similarity=0.295  Sum_probs=104.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      .++|...+.||+|+||.||+|..++++.||+|.+....  ....+|.+|+.++++++|+|++++.+++. .+..++++||
T Consensus         5 ~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~   81 (260)
T cd05067           5 RETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGS--MSPEAFLAEANLMKQLQHPRLVRLYAVVT-QEPIYIITEY   81 (260)
T ss_pred             hHHceeeeeeccCccceEEeeecCCCceEEEEEecCCC--CcHHHHHHHHHHHHhcCCcCeeeEEEEEc-cCCcEEEEEc
Confidence            45677789999999999999998889999999986432  23568999999999999999999999874 5578999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.++++....     ..+++.++..++.|++.||+|||+.   +|+||
T Consensus        82 ~~~~~L~~~~~~~~~-----~~~~~~~~~~i~~~i~~al~~LH~~---~i~H~  126 (260)
T cd05067          82 MENGSLVDFLKTPEG-----IKLTINKLIDMAAQIAEGMAFIERK---NYIHR  126 (260)
T ss_pred             CCCCCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHhcC---Ceecc
Confidence            999999999875431     2578888999999999999999988   99997

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.68  E-value=2.9e-16  Score=145.56  Aligned_cols=124  Identities=19%  Similarity=0.304  Sum_probs=108.4

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      ..++|...+.||+|+||.||++..++++.||||.+....  ...+++.+|+.++++++|+|++++++++......++|||
T Consensus         4 ~~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   81 (261)
T cd05034           4 PRESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGT--MSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTE   81 (261)
T ss_pred             chhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCc--cCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEe
Confidence            346778889999999999999998878889999986432  235689999999999999999999999999899999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.++++....     ..+++.++..++.|++.|++|||+.   +|+||
T Consensus        82 ~~~~~~L~~~i~~~~~-----~~~~~~~~~~~~~~i~~al~~lh~~---~i~h~  127 (261)
T cd05034          82 YMSKGSLLDFLKSGEG-----KKLRLPQLVDMAAQIAEGMAYLESR---NYIHR  127 (261)
T ss_pred             ccCCCCHHHHHhcccc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            9999999999976431     2578888999999999999999999   89996

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.68  E-value=2.9e-16  Score=147.20  Aligned_cols=122  Identities=22%  Similarity=0.428  Sum_probs=103.5

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCC----EEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      .+|...+.||+|+||.||+|... +|.    .+|+|.+..........++.+|+..+++++|+|+++++++|.. ...++
T Consensus         7 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~~   85 (279)
T cd05057           7 TELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQL   85 (279)
T ss_pred             HHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceEE
Confidence            45667789999999999999964 333    6899988654433345678999999999999999999999987 78899


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+||+++|+|.++++....      .+++..+..++.||++|++|||+.   +|+||
T Consensus        86 v~e~~~~g~L~~~l~~~~~------~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~  133 (279)
T cd05057          86 ITQLMPLGCLLDYVRNHKD------NIGSQYLLNWCVQIAKGMSYLEEK---RLVHR  133 (279)
T ss_pred             EEecCCCCcHHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHhC---CEEec
Confidence            9999999999999986532      478889999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.68  E-value=2.6e-16  Score=150.96  Aligned_cols=121  Identities=18%  Similarity=0.240  Sum_probs=102.0

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCC-CCCCcceeEEEecCCceeEEe
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMAV-HRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~  364 (419)
                      +|...+.||+|+||.||++... +|+.||+|.++....  ....+.+..|..++..+. |++|+++.+++.+.+..++||
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            3566789999999999999964 689999999864321  223456788999988886 567888999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus        81 Ey~~~g~L~~~i~~~~-------~l~~~~~~~i~~qi~~al~~lH~~---~ivHr  125 (323)
T cd05615          81 EYVNGGDLMYHIQQVG-------KFKEPQAVFYAAEISVGLFFLHRR---GIIYR  125 (323)
T ss_pred             cCCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            9999999999987654       588889999999999999999998   99998

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.68  E-value=1.7e-16  Score=154.78  Aligned_cols=124  Identities=17%  Similarity=0.223  Sum_probs=108.6

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccccc-CHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQG-GELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~-~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      ....|.....||+|.|+.|..++. .+|..||+|.++...... ..+.+.+|+++|..++|||||+++.+...+...|+|
T Consensus        54 ~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV  133 (596)
T KOG0586|consen   54 SVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLV  133 (596)
T ss_pred             cccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEE
Confidence            455677789999999999999996 479999999996543322 235689999999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+.+|.+++++....       +.....+..++.|+.+|++|+|++   .|+||
T Consensus       134 ~eya~~ge~~~yl~~~g-------r~~e~~ar~~F~q~vsaveYcH~k---~ivHr  179 (596)
T KOG0586|consen  134 MEYASGGELFDYLVKHG-------RMKEKEARAKFRQIVSAVEYCHSK---NIVHR  179 (596)
T ss_pred             EEeccCchhHHHHHhcc-------cchhhhhhhhhHHHHHHHHHHhhc---ceecc
Confidence            99999999999999876       566678888999999999999999   99998

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.68  E-value=1.5e-16  Score=149.15  Aligned_cols=124  Identities=20%  Similarity=0.295  Sum_probs=107.0

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      +.++|...+.||+|+||.||++... ++..||+|.++.. .....+.|.+|++++++++|+|++++++++..++..++||
T Consensus         3 ~~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (280)
T cd06611           3 PNDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIE-SEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILI   81 (280)
T ss_pred             chhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeC-CHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEe
Confidence            3456777788999999999999974 6889999998533 2223457999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++.....      .+++.++..++.|++.||.|||+.   +|+||
T Consensus        82 e~~~~~~L~~~~~~~~~------~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~  127 (280)
T cd06611          82 EFCDGGALDSIMLELER------GLTEPQIRYVCRQMLEALNFLHSH---KVIHR  127 (280)
T ss_pred             eccCCCcHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            99999999999876431      578889999999999999999999   89997

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.68  E-value=1.2e-16  Score=148.90  Aligned_cols=123  Identities=23%  Similarity=0.200  Sum_probs=105.1

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc--cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      +|...+.||.|.-|+||.+.++ ++..+|+|++....-.  ........|-++|+.++||.+++|++.+..++..++|||
T Consensus        78 ~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~me  157 (459)
T KOG0610|consen   78 HFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVME  157 (459)
T ss_pred             HHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEe
Confidence            4445578999999999999986 4689999999654322  223456778899999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||++|+|...++++...     .+++..+..++.+|+-||+|||-.   +||.|
T Consensus       158 yCpGGdL~~LrqkQp~~-----~fse~~aRFYaAEvl~ALEYLHml---GivYR  203 (459)
T KOG0610|consen  158 YCPGGDLHSLRQKQPGK-----RFSESAARFYAAEVLLALEYLHML---GIVYR  203 (459)
T ss_pred             cCCCccHHHHHhhCCCC-----ccchhhHHHHHHHHHHHHHHHHhh---ceeec
Confidence            99999999999887642     789999999999999999999988   88876

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.68  E-value=3.3e-17  Score=159.97  Aligned_cols=119  Identities=16%  Similarity=0.256  Sum_probs=100.3

Q ss_pred             CCeeCcCCceEEEEEEeC-CCCEEEEEEccccc---cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc--eeEEecc
Q 014778          293 RNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER---TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE--RLLVYPF  366 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~--~~lv~e~  366 (419)
                      ..+||+|+|-+||||... +|..||--.++...   .....+.|..|+++|+.++|+|||+++.++.+...  .-+|+|.
T Consensus        45 ~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL  124 (632)
T KOG0584|consen   45 DEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITEL  124 (632)
T ss_pred             hhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeec
Confidence            478999999999999974 68888855543222   22234689999999999999999999999988655  6789999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |..|+|..|+++.+       .++.+....+|+||++||.|||++ .||||||
T Consensus       125 ~TSGtLr~Y~kk~~-------~vn~kaik~W~RQILkGL~yLHs~-~PPIIHR  169 (632)
T KOG0584|consen  125 FTSGTLREYRKKHR-------RVNIKAIKSWCRQILKGLVYLHSQ-DPPIIHR  169 (632)
T ss_pred             ccCCcHHHHHHHhc-------cCCHHHHHHHHHHHHHHhhhhhcC-CCCcccc
Confidence            99999999999876       577778888999999999999975 8999998

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.68  E-value=2.3e-16  Score=147.98  Aligned_cols=131  Identities=18%  Similarity=0.311  Sum_probs=108.0

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeCC-----CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEec-CCc
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLTD-----GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT-PTE  359 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~~-----g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~  359 (419)
                      ..++|...++||+|+||.||+|...+     +..||+|.+...........+.+|+.++.+++|+|++++++++.. ...
T Consensus         4 ~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~   83 (280)
T cd05043           4 SRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEP   83 (280)
T ss_pred             chhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence            34567788999999999999999754     678999998644333345678999999999999999999999877 467


Q ss_pred             eeEEeccCCCCChhhhhcCCccc-cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIV-SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~-~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++++||+++|+|.+++...... ...+..+++.++..++.|++.||+|||+.   +|+||
T Consensus        84 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---~i~H~  141 (280)
T cd05043          84 PFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKR---GVIHK  141 (280)
T ss_pred             CEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CEeec
Confidence            89999999999999999764321 11123688999999999999999999988   99997

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.68  E-value=4.1e-16  Score=147.96  Aligned_cols=122  Identities=22%  Similarity=0.352  Sum_probs=104.5

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +.|...+.||+|+||.||+|... +++.||+|.++..........+.+|+..+++++||||+++++++..++..++|+||
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~   85 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   85 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEec
Confidence            45777789999999999999975 68899999986443333445688999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++ |+|.+++.....      .+++..+..++.||++||+|||+.   +|+||
T Consensus        86 ~~-~~l~~~l~~~~~------~~~~~~~~~~~~qi~~aL~~lH~~---~i~H~  128 (301)
T cd07873          86 LD-KDLKQYLDDCGN------SINMHNVKLFLFQLLRGLNYCHRR---KVLHR  128 (301)
T ss_pred             cc-cCHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHhC---CeeCC
Confidence            98 599998875432      467788899999999999999998   99997

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.68  E-value=3e-16  Score=147.78  Aligned_cols=122  Identities=21%  Similarity=0.280  Sum_probs=103.4

Q ss_pred             CCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          290 FSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      |...+.||+|+||+||++.. .+++.||+|.+.....  ......+.+|++++..++|+|++++.+++...+..++||||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            45568899999999999996 4789999999854321  12234578899999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.+++.....     ..+++..+..++.|++.||+|||+.   +|+||
T Consensus        82 ~~~~~L~~~~~~~~~-----~~~~~~~~~~~~~ql~~~l~~lH~~---~iiH~  126 (285)
T cd05632          82 MNGGDLKFHIYNMGN-----PGFEEERALFYAAEILCGLEDLHRE---NTVYR  126 (285)
T ss_pred             ccCccHHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHhC---Ceeec
Confidence            999999998875321     1588999999999999999999998   99997

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.67  E-value=2e-16  Score=149.37  Aligned_cols=132  Identities=23%  Similarity=0.364  Sum_probs=108.2

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecC
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTP  357 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  357 (419)
                      ...++|+..+.||+|+||.||++...      ....+|+|.+..........++.+|++++.++ +|+||+++++++...
T Consensus         9 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~   88 (293)
T cd05053           9 LPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQE   88 (293)
T ss_pred             cCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCC
Confidence            34456777899999999999999863      23689999986543333345689999999999 899999999999999


Q ss_pred             CceeEEeccCCCCChhhhhcCCcc---------ccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFI---------VSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~---------~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +..+++|||+++|+|.++++....         .......+++..++.++.|++.|++|||+.   +|+||
T Consensus        89 ~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~  156 (293)
T cd05053          89 GPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASK---KCIHR  156 (293)
T ss_pred             CCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            999999999999999999975321         002233688999999999999999999988   99997

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.67  E-value=3.2e-16  Score=150.94  Aligned_cols=121  Identities=21%  Similarity=0.228  Sum_probs=102.9

Q ss_pred             CCCCCCeeCcCCceEEEEEEe----CCCCEEEEEEcccccc---ccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCce
Q 014778          289 NFSNRNILGRGGFGKVYKGRL----TDGSLVAVKRLKEERT---QGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~~---~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~  360 (419)
                      +|...+.||+|+||.||+++.    .+++.||+|.++....   ....+.+.+|+.++..+ +|+||+++++++...+..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            366778999999999999885    3578999999854321   12234688899999999 599999999999999999


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus        81 ~lv~e~~~~g~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~ivHr  129 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQRD-------NFSEDEVRFYSGEIILALEHLHKL---GIVYR  129 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcEec
Confidence            99999999999999997653       578888899999999999999998   99998

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.67  E-value=3.7e-16  Score=144.49  Aligned_cols=122  Identities=23%  Similarity=0.388  Sum_probs=106.9

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      .++|...+.||+|+||.||+|... |+.||+|.++....  ..+++.+|+.++++++|+|++++++++.+.+..++||||
T Consensus         5 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~v~iK~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   81 (256)
T cd05039           5 SKELKLGATIGKGEFGDVMLGDYR-GQKVAVKCLKDDST--AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEY   81 (256)
T ss_pred             hhhccceeeeecCCCceEEEEEec-CcEEEEEEeccchh--HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEe
Confidence            346777899999999999999975 78999999964432  456899999999999999999999999998999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.++++....     ..+++..+..++.|++.|+.|||+.   +|+||
T Consensus        82 ~~~~~L~~~~~~~~~-----~~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~  126 (256)
T cd05039          82 MAKGSLVDYLRSRGR-----AVITLAQQLGFALDVCEGMEYLEEK---NFVHR  126 (256)
T ss_pred             cCCCcHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---Cccch
Confidence            999999999976431     1478889999999999999999999   99997

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.67  E-value=3.1e-16  Score=145.88  Aligned_cols=121  Identities=21%  Similarity=0.360  Sum_probs=104.5

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccc-----cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQ-----GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~-----~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      +|+..+.||+|+||.||++.. .+++.||+|.+......     ...+.+.+|++++++++|+|++++++++.+.+..++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            366778999999999999985 57899999998533211     123578999999999999999999999999999999


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+||+++|+|.+++.+..       .+++.....++.|++.||+|||+.   +|+||
T Consensus        81 v~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~ql~~al~~LH~~---~i~H~  127 (268)
T cd06630          81 FVEWMAGGSVSHLLSKYG-------AFKEAVIINYTEQLLRGLSYLHEN---QIIHR  127 (268)
T ss_pred             EEeccCCCcHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            999999999999997643       477888899999999999999999   99997

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.67  E-value=3.8e-16  Score=147.10  Aligned_cols=122  Identities=21%  Similarity=0.278  Sum_probs=103.3

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc--cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      |+..+.||+|+||.||++... +++.||||.+......  .....+.+|+.++.+++|+|++++.+++.+.+..++||||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence            556688999999999999964 6899999998543221  1234578899999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.+++.....     ..+++.++..++.|++.||.|||+.   +|+||
T Consensus        82 ~~g~~L~~~l~~~~~-----~~l~~~~~~~~~~qi~~~l~~lH~~---~iiH~  126 (285)
T cd05630          82 MNGGDLKFHIYHMGE-----AGFEEGRAVFYAAEICCGLEDLHQE---RIVYR  126 (285)
T ss_pred             cCCCcHHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHhC---CEEeC
Confidence            999999999865321     1478888999999999999999988   99997

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.67  E-value=3e-16  Score=148.64  Aligned_cols=129  Identities=20%  Similarity=0.386  Sum_probs=105.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCC--EEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGS--LVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~--~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  363 (419)
                      ++|+..++||+|+||.||+|... ++.  .+|+|.++........+.|.+|++++.++ +||||+++++++...+..++|
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv   81 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIA   81 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEE
Confidence            46777899999999999999974 343  57899886433333356799999999999 799999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccc---------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIV---------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~---------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||+++|+|.++++.....         ......+++..+..++.|++.|++|||+.   +|+||
T Consensus        82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~---~ivH~  143 (297)
T cd05089          82 IEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEK---QFIHR  143 (297)
T ss_pred             EEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            9999999999999764311         11223588889999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.67  E-value=3.1e-16  Score=149.30  Aligned_cols=130  Identities=21%  Similarity=0.292  Sum_probs=106.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC--------CCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecC
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT--------DGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTP  357 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  357 (419)
                      .+.|...+.||+|+||.||++...        ++..+|+|.++.........++.+|++++..+ +|+||++++++|...
T Consensus        17 ~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~   96 (307)
T cd05098          17 RDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD   96 (307)
T ss_pred             hHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC
Confidence            356788899999999999999752        23579999996543333345788999999999 899999999999999


Q ss_pred             CceeEEeccCCCCChhhhhcCCccc---------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIV---------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~---------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +..++|+||+++|+|.++++.....         ......+++.+++.++.|++.||+|||+.   +|+||
T Consensus        97 ~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~  164 (307)
T cd05098          97 GPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASK---KCIHR  164 (307)
T ss_pred             CceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            9999999999999999999864321         01123588889999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.67  E-value=4.3e-16  Score=149.00  Aligned_cols=116  Identities=21%  Similarity=0.289  Sum_probs=98.6

Q ss_pred             CeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhc-CCCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISM-AVHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~-l~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      ++||+|+||.||+|+.. +|+.||+|.++....  ......+..|.+++.. .+||||+++++++.+.+..++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            46999999999999975 688999999964321  2234457778888875 5899999999999999999999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|.+++....       .+++.++..++.|+++||+|||+.   +|+||
T Consensus        81 g~L~~~i~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~ivHr  120 (316)
T cd05620          81 GDLMFHIQDKG-------RFDLYRATFYAAEIVCGLQFLHSK---GIIYR  120 (316)
T ss_pred             CcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEec
Confidence            99999987643       577888899999999999999999   99998

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.67  E-value=3.9e-16  Score=147.23  Aligned_cols=122  Identities=22%  Similarity=0.365  Sum_probs=104.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ++|...+.||+|+||.||+|..+ +++.||+|.+...........+.+|++++++++|+||+++++++.+.+..++||||
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEY   84 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEec
Confidence            46777889999999999999975 68899999986443333344678899999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++ +|.+++.+...      .+++..+..++.|+++||.|||+.   +|+||
T Consensus        85 ~~~-~L~~~~~~~~~------~~~~~~~~~~~~ql~~al~~lH~~---~i~H~  127 (291)
T cd07844          85 LDT-DLKQYMDDCGG------GLSMHNVRLFLFQLLRGLAYCHQR---RVLHR  127 (291)
T ss_pred             CCC-CHHHHHHhCCC------CCCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            985 99998876432      467888899999999999999999   99997

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.67  E-value=3.7e-16  Score=149.95  Aligned_cols=121  Identities=18%  Similarity=0.251  Sum_probs=101.9

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEEe
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      +|...+.||+|+||.||+|+.. +++.||+|.++....  ....+.+..|..++..+ +|++|+++.+++.+.+..++||
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            4667789999999999999965 678999999864322  12234577788888777 5899999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.|++.||+|||+.   +|+||
T Consensus        81 E~~~~g~L~~~~~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHr  125 (323)
T cd05616          81 EYVNGGDLMYQIQQVG-------RFKEPHAVFYAAEIAIGLFFLHSK---GIIYR  125 (323)
T ss_pred             cCCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CEEec
Confidence            9999999999987654       577888999999999999999998   99998

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.67  E-value=3.6e-16  Score=146.58  Aligned_cols=122  Identities=23%  Similarity=0.353  Sum_probs=103.0

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCC----EEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~----~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      ++|...+.||+|+||+||+|.. ++|.    .||+|.++........+++.+|+..+..++|+|++++++++... ..++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~l   85 (279)
T cd05109           7 TELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTS-TVQL   85 (279)
T ss_pred             hheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCC-CcEE
Confidence            4677789999999999999985 4454    48999986544434456789999999999999999999999764 5779


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||+++|+|.++++....      .+++..++.++.||++||+|||+.   +|+||
T Consensus        86 ~~~~~~~g~l~~~l~~~~~------~~~~~~~~~~~~qi~~~L~~lH~~---~iiH~  133 (279)
T cd05109          86 VTQLMPYGCLLDYVRENKD------RIGSQDLLNWCVQIAKGMSYLEEV---RLVHR  133 (279)
T ss_pred             EEEcCCCCCHHHHHhhccC------CCCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            9999999999999986432      578888999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.67  E-value=5.1e-16  Score=143.39  Aligned_cols=120  Identities=22%  Similarity=0.347  Sum_probs=103.9

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc----ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT----QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~----~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      |...+.||+|+||.||+|... ++..||+|.+.....    ....+.+.+|+.++++++|+|++++++++......++++
T Consensus         2 ~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (258)
T cd06632           2 WRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFL   81 (258)
T ss_pred             ccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEE
Confidence            566789999999999999975 789999999853221    123457899999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++++|.+++++..       .+++..+..++.|+++|++|||+.   +|+||
T Consensus        82 e~~~~~~L~~~~~~~~-------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  126 (258)
T cd06632          82 ELVPGGSLAKLLKKYG-------SFPEPVIRLYTRQILLGLEYLHDR---NTVHR  126 (258)
T ss_pred             EecCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            9999999999997643       477888889999999999999998   99997

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.67  E-value=3.5e-16  Score=146.78  Aligned_cols=122  Identities=18%  Similarity=0.268  Sum_probs=99.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCC----EEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      ++|...+.||+|+||.||+|.+. +++    .+|+|.+..........++..|+..+++++||||++++|++.. ...++
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~-~~~~~   85 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPG-ASLQL   85 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECC-CccEE
Confidence            35667789999999999999963 454    4788887543332334578888889999999999999998864 45778


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||+++|+|.++++....      .+++..+..++.||+.||+|||+.   +|+||
T Consensus        86 i~e~~~~gsL~~~l~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~iiH~  133 (279)
T cd05111          86 VTQLSPLGSLLDHVRQHRD------SLDPQRLLNWCVQIAKGMYYLEEH---RMVHR  133 (279)
T ss_pred             EEEeCCCCcHHHHHHhccc------CCCHHHHHHHHHHHHHHHHHHHHC---CEecc
Confidence            9999999999999976432      578889999999999999999998   89997

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.67  E-value=1.8e-16  Score=147.66  Aligned_cols=123  Identities=25%  Similarity=0.418  Sum_probs=102.3

Q ss_pred             CeeCcCCceEEEEEEeCC-------CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          294 NILGRGGFGKVYKGRLTD-------GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~~-------g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +.||+|+||.||+|+..+       ++.+|+|.+..........+|.+|+.+++.++||||+++++++...+..++||||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEec
Confidence            368999999999998642       2579999986443333456899999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.++++...........+++.++..++.|+++|++|||+.   +|+||
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~  130 (269)
T cd05044          81 MEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQM---HFIHR  130 (269)
T ss_pred             cCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            999999999986432221233578889999999999999999988   89996

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.67  E-value=3.6e-16  Score=144.33  Aligned_cols=123  Identities=16%  Similarity=0.189  Sum_probs=105.6

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +|+..+.||+|+||.||++... +++.|++|.+.... .....+++.+|++++++++|||++++++++.+.+..++||||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEY   80 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEe
Confidence            3666789999999999999974 68999999985322 223456799999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++++|.++++....     ..+++.++..++.|++.||.|||+.   +|+||
T Consensus        81 ~~~~~L~~~l~~~~~-----~~~~~~~~~~i~~~l~~al~~lH~~---~i~h~  125 (256)
T cd08529          81 AENGDLHKLLKMQRG-----RPLPEDQVWRFFIQILLGLAHLHSK---KILHR  125 (256)
T ss_pred             CCCCcHHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            999999999986421     2578888899999999999999988   99997

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.67  E-value=2.5e-16  Score=147.30  Aligned_cols=130  Identities=21%  Similarity=0.294  Sum_probs=107.2

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCce
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  360 (419)
                      .++|...+.||+|+||.||+|...      ++..||+|.+...........|.+|+.++..++|+|++++++++......
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~   84 (277)
T cd05032           5 REKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPT   84 (277)
T ss_pred             hHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCc
Confidence            456777899999999999999864      23689999986443333345789999999999999999999999999999


Q ss_pred             eEEeccCCCCChhhhhcCCcccc---CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVS---GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~---~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++|+|.+++.......   .....+++..+..++.|++.|+.|||+.   +|+||
T Consensus        85 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  143 (277)
T cd05032          85 LVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAK---KFVHR  143 (277)
T ss_pred             EEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhC---Ccccc
Confidence            99999999999999997643211   1122477888999999999999999988   99997

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.67  E-value=3.3e-16  Score=150.98  Aligned_cols=119  Identities=13%  Similarity=0.345  Sum_probs=99.8

Q ss_pred             CCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC-----ceeE
Q 014778          290 FSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT-----ERLL  362 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----~~~l  362 (419)
                      |...+.||+|+||.||+|.. .+|+.||||+++... .......+.+|++++++++||||+++++++....     ..++
T Consensus         2 y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~l   81 (338)
T cd07859           2 YKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYV   81 (338)
T ss_pred             eEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEE
Confidence            56678999999999999996 478999999986332 1223456899999999999999999999886532     4799


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||++ ++|.+++....       .+++..+..++.||++||+|||+.   +|+||
T Consensus        82 v~e~~~-~~L~~~l~~~~-------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~  127 (338)
T cd07859          82 VFELME-SDLHQVIKAND-------DLTPEHHQFFLYQLLRALKYIHTA---NVFHR  127 (338)
T ss_pred             EEecCC-CCHHHHHHhcc-------cCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            999996 68999887653       578888999999999999999999   99998

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.67  E-value=3.6e-16  Score=144.99  Aligned_cols=121  Identities=19%  Similarity=0.272  Sum_probs=103.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      ++|...+.||+|+||.||+|..+++..+|+|.++...  ...+.|.+|+.++++++|+|++++++++. .+..+++|||+
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~   82 (260)
T cd05070           6 ESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGT--MSPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVTEYM   82 (260)
T ss_pred             HHhhhhheeccccCceEEEEEecCCceeEEEEecCCC--CCHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEEEec
Confidence            4567778999999999999998888889999986432  23567999999999999999999999875 45689999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|.++++....     ..+++.++..++.|++.|++|||+.   +|+||
T Consensus        83 ~~~~L~~~~~~~~~-----~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~  126 (260)
T cd05070          83 SKGSLLDFLKDGEG-----RALKLPNLVDMAAQVAAGMAYIERM---NYIHR  126 (260)
T ss_pred             CCCcHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            99999999975421     1478888999999999999999998   89997

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.67  E-value=4.1e-16  Score=147.39  Aligned_cols=130  Identities=20%  Similarity=0.314  Sum_probs=107.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCC-----------------CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcc
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTD-----------------GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR  349 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~-----------------g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~  349 (419)
                      ..+|...+.||+|+||.||++...+                 +..||+|.+.........++|.+|++++++++|||+++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~   83 (296)
T cd05051           4 RQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIAR   83 (296)
T ss_pred             hhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeE
Confidence            3467778999999999999988532                 24689999865443344568999999999999999999


Q ss_pred             eeEEEecCCceeEEeccCCCCChhhhhcCCcccc----CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          350 LRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVS----GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       350 l~g~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~~----~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++++..++..++++||+++|+|.+++.......    .....+++..+..++.|++.||+|||+.   +|+||
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~---~i~H~  154 (296)
T cd05051          84 LLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESL---NFVHR  154 (296)
T ss_pred             EEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHc---Ccccc
Confidence            9999999999999999999999999997654211    1122578889999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.67  E-value=5.2e-16  Score=145.85  Aligned_cols=118  Identities=23%  Similarity=0.390  Sum_probs=100.5

Q ss_pred             CCCCeeCcCCceEEEEEEe-----CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecC--CceeEE
Q 014778          291 SNRNILGRGGFGKVYKGRL-----TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP--TERLLV  363 (419)
Q Consensus       291 ~~~~~lG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv  363 (419)
                      ...+.||+|+||+||.+.+     .+++.||+|.++..........|.+|++++++++||||+++++++...  ...++|
T Consensus         7 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv   86 (283)
T cd05080           7 KKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLI   86 (283)
T ss_pred             eeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEEE
Confidence            6678999999999988653     357899999986543333456789999999999999999999998764  357899


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.+++...        .+++.++..++.|++.|++|||+.   +|+||
T Consensus        87 ~e~~~~~~l~~~~~~~--------~l~~~~~~~i~~~l~~~l~~lH~~---~i~H~  131 (283)
T cd05080          87 MEYVPLGSLRDYLPKH--------KLNLAQLLLFAQQICEGMAYLHSQ---HYIHR  131 (283)
T ss_pred             ecCCCCCCHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            9999999999999754        478899999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.67  E-value=4.8e-16  Score=145.10  Aligned_cols=120  Identities=23%  Similarity=0.388  Sum_probs=102.0

Q ss_pred             CCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccc--c-------CHHHHHHHHHHHhcCCCCCCcceeEEEecCCc
Q 014778          290 FSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQ--G-------GELQFQTEVEMISMAVHRNLLRLRGFCMTPTE  359 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~--~-------~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  359 (419)
                      |...+.||+|+||.||+|.. .+|+.||+|.++.....  .       ..+.+.+|+.+++.++|+|++++++++...+.
T Consensus         3 ~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   82 (272)
T cd06629           3 WVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEY   82 (272)
T ss_pred             eeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCc
Confidence            45568999999999999986 46899999988532110  0       12467889999999999999999999999999


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++|+||+++|+|.+++++..       .+++..+..++.||+.|+.|||+.   +++||
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~~-------~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~  132 (272)
T cd06629          83 LSIFLEYVPGGSIGSCLRTYG-------RFEEQLVRFFTEQVLEGLAYLHSK---GILHR  132 (272)
T ss_pred             eEEEEecCCCCcHHHHHhhcc-------CCCHHHHHHHHHHHHHHHHHHhhC---Ceeec
Confidence            999999999999999998653       577788888999999999999998   89997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.67  E-value=4.3e-16  Score=144.80  Aligned_cols=122  Identities=22%  Similarity=0.368  Sum_probs=105.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      .+|...+.||+|+||.||+|... +++.||+|.++..  .....++.+|++++.+++|+|++++++++..++..++||||
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~--~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (263)
T cd05052           6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED--TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF   83 (263)
T ss_pred             HHeEEeeecCCcccceEEEEEEecCCceEEEEEecCC--chHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEe
Confidence            34667789999999999999974 5889999998543  22356799999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.+++.....     ..+++..+..++.|+++||+|||+.   +|+||
T Consensus        84 ~~~~~L~~~~~~~~~-----~~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~  128 (263)
T cd05052          84 MTYGNLLDYLRECNR-----QEVNAVVLLYMATQISSAMEYLEKK---NFIHR  128 (263)
T ss_pred             CCCCcHHHHHHhCCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CEeec
Confidence            999999999975431     1578888899999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.67  E-value=3.5e-16  Score=164.25  Aligned_cols=129  Identities=16%  Similarity=0.310  Sum_probs=106.5

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc--cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...+.||+|+||.||+|+.. +|+.||+|+++.....  ...+.|.+|++++++++||||+++++++.+.+..++||
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            35777899999999999999964 6899999999643221  12457999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccc----cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIV----SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~----~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.++++.....    .......++.+++.++.||++||+|||+.   +|+||
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~---GIIHR  137 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSK---GVLHR  137 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            999999999998742110    11223456778889999999999999998   99998

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.67  E-value=5.3e-16  Score=145.57  Aligned_cols=117  Identities=19%  Similarity=0.218  Sum_probs=100.2

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      +|...++||+|+||.||+|.. .+++.||+|.+.........++|.+|++++.+++|||++++++++...+..++||||+
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   81 (279)
T cd06619           2 DIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFM   81 (279)
T ss_pred             cchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecC
Confidence            566778999999999999995 5788999999854333333457999999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|..+.           .+++..+..++.|++.||+|||+.   +|+||
T Consensus        82 ~~~~l~~~~-----------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~  119 (279)
T cd06619          82 DGGSLDVYR-----------KIPEHVLGRIAVAVVKGLTYLWSL---KILHR  119 (279)
T ss_pred             CCCChHHhh-----------cCCHHHHHHHHHHHHHHHHHHHHC---CEeeC
Confidence            999997542           355667788999999999999998   99997

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.67  E-value=5.6e-16  Score=145.29  Aligned_cols=116  Identities=20%  Similarity=0.256  Sum_probs=98.0

Q ss_pred             eCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCCh
Q 014778          296 LGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSV  372 (419)
Q Consensus       296 lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~GsL  372 (419)
                      ||+|+||.||++... +|+.||+|++.....  ....+.+..|++++.+++||||+++.+++......++||||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            699999999999964 689999999964322  12234567799999999999999999999999999999999999999


Q ss_pred             hhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          373 ASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       373 ~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++++....     ..+++..+..++.||+.||+|||+.   +|+||
T Consensus        81 ~~~~~~~~~-----~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~  119 (277)
T cd05607          81 KYHIYNVGE-----RGLEMERVIHYSAQITCGILHLHSM---DIVYR  119 (277)
T ss_pred             HHHHHhccc-----cCCCHHHHHHHHHHHHHHHHHHHHC---CEEEc
Confidence            988865431     1477888889999999999999998   99997

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.67  E-value=5.6e-16  Score=145.58  Aligned_cols=121  Identities=17%  Similarity=0.238  Sum_probs=104.4

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +|+....||+|+||.||+|... +|+.||+|++..... ....+.+.+|+.++++++|+|++++++++......++||||
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~   81 (286)
T cd07847           2 KYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEY   81 (286)
T ss_pred             ceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEec
Confidence            5677789999999999999975 689999999854322 22345688999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++++|..+++...       .+++.++..++.|++.||+|||+.   +|+||
T Consensus        82 ~~~~~l~~~~~~~~-------~~~~~~~~~~~~ql~~~l~~LH~~---~i~H~  124 (286)
T cd07847          82 CDHTVLNELEKNPR-------GVPEHLIKKIIWQTLQAVNFCHKH---NCIHR  124 (286)
T ss_pred             cCccHHHHHHhCCC-------CCCHHHHHHHHHHHHHHHHHHHHC---Cceec
Confidence            99998888776543       578899999999999999999998   99997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.67  E-value=2.7e-16  Score=147.83  Aligned_cols=121  Identities=17%  Similarity=0.268  Sum_probs=104.5

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc-cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +|+..+.||+|+||.||+|... +++.||+|++...... ...+.+.+|+++++.++|||++++++++..++..++|+||
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   81 (286)
T cd07846           2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEF   81 (286)
T ss_pred             ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEec
Confidence            5677799999999999999975 5899999998543222 2345788999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++++|.++.+...       .+++.++..++.||++||+|||+.   +|+||
T Consensus        82 ~~~~~l~~~~~~~~-------~~~~~~~~~~~~~i~~~l~~LH~~---~i~h~  124 (286)
T cd07846          82 VDHTVLDDLEKYPN-------GLDESRVRKYLFQILRGIEFCHSH---NIIHR  124 (286)
T ss_pred             CCccHHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            99999988776543       478889999999999999999998   89997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.66  E-value=3.9e-16  Score=149.08  Aligned_cols=131  Identities=19%  Similarity=0.307  Sum_probs=106.5

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC--------CCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEec
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT--------DGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMT  356 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  356 (419)
                      ..++|...+.||+|+||.||++...        ....+|+|.++.........++.+|++++.++ +||||++++++|..
T Consensus        10 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~   89 (314)
T cd05099          10 PRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQ   89 (314)
T ss_pred             cHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEcc
Confidence            3456777899999999999999741        24579999986443333355789999999999 69999999999999


Q ss_pred             CCceeEEeccCCCCChhhhhcCCccc---------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          357 PTERLLVYPFMVNGSVASCLRGMFIV---------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       357 ~~~~~lv~e~~~~GsL~~~L~~~~~~---------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .+..++|+||+++|+|.+++......         ......+++.+...++.|++.||+|||++   +|+||
T Consensus        90 ~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~---gi~H~  158 (314)
T cd05099          90 EGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESR---RCIHR  158 (314)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            99999999999999999999764310         01123588889999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.66  E-value=5.8e-16  Score=143.91  Aligned_cols=122  Identities=19%  Similarity=0.323  Sum_probs=103.1

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      .+.|...+.||+|+||.||+|...+...||+|+++...  ...++|.+|++++++++|+||+++++++. .+..++||||
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~--~~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~   81 (262)
T cd05071           5 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT--MSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEY   81 (262)
T ss_pred             hHHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCc--cCHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEEEc
Confidence            34577788999999999999998766789999996422  23467999999999999999999999874 4567999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.++++....     ..+++..+..++.|+++||+|||+.   +|+||
T Consensus        82 ~~~~~L~~~~~~~~~-----~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~  126 (262)
T cd05071          82 MSKGSLLDFLKGEMG-----KYLRLPQLVDMAAQIASGMAYVERM---NYVHR  126 (262)
T ss_pred             CCCCcHHHHHhhccc-----cCCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            999999999975321     2467888999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.66  E-value=5.2e-16  Score=146.48  Aligned_cols=121  Identities=21%  Similarity=0.263  Sum_probs=105.5

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      +|+..+.||+|+||.||++... +++.||+|.+.....  ....+.+.+|++++++++||||+++++++...+..++|||
T Consensus         2 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   81 (290)
T cd05580           2 DFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVME   81 (290)
T ss_pred             ceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEe
Confidence            5777889999999999999964 689999999854321  2234578999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.++++...       .+++..+..++.|++.||+|||+.   +|+||
T Consensus        82 ~~~~~~L~~~~~~~~-------~l~~~~~~~~~~qil~~l~~lH~~---~i~H~  125 (290)
T cd05580          82 YVPGGELFSHLRKSG-------RFPEPVARFYAAQVVLALEYLHSL---DIVYR  125 (290)
T ss_pred             cCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CEecC
Confidence            999999999997653       577888889999999999999998   99997

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.66  E-value=5e-16  Score=149.29  Aligned_cols=116  Identities=20%  Similarity=0.252  Sum_probs=99.9

Q ss_pred             CeeCcCCceEEEEEEeC-CCCEEEEEEccccccc--cCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ--GGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~--~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      +.||+|+||.||++... +++.||+|+++.....  ...+.+.+|+.++.++ +||||+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            46999999999999964 6889999999643221  2234688999999888 699999999999999999999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|.+++....       .+++..+..++.|++.||+|||+.   +|+||
T Consensus        81 ~~L~~~~~~~~-------~l~~~~~~~~~~qi~~al~~lH~~---~ivHr  120 (327)
T cd05617          81 GDLMFHMQRQR-------KLPEEHARFYAAEICIALNFLHER---GIIYR  120 (327)
T ss_pred             CcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            99999887543       588889999999999999999999   99998

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.66  E-value=5.6e-16  Score=145.17  Aligned_cols=120  Identities=18%  Similarity=0.290  Sum_probs=104.0

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      -|+..+.||+|+||.||+|.. .++..||+|.+.........+.|.+|+.++.+++|||++++++++...+..++||||+
T Consensus         5 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06641           5 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYL   84 (277)
T ss_pred             hhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeC
Confidence            355668899999999999986 4688999999854333333467899999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|.+++...        .+++..+..++.|++.|+.|||+.   +|+|+
T Consensus        85 ~~~~l~~~i~~~--------~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~  125 (277)
T cd06641          85 GGGSALDLLEPG--------PLDETQIATILREILKGLDYLHSE---KKIHR  125 (277)
T ss_pred             CCCcHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHccC---CeecC
Confidence            999999998753        467888999999999999999998   99996

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.66  E-value=2e-16  Score=148.19  Aligned_cols=119  Identities=19%  Similarity=0.342  Sum_probs=102.3

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCC
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMV  368 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~  368 (419)
                      |+..+.||+|+||.||+|... ++..||+|.++........+.+.+|++++++++||||+++++++...+..++|+||++
T Consensus         6 y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   85 (277)
T cd06642           6 FTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLG   85 (277)
T ss_pred             HHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccC
Confidence            344577999999999999864 6789999998643333334578999999999999999999999999999999999999


Q ss_pred             CCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          369 NGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       369 ~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|+|.+++...        .+++..+..++.|++.|+.|||+.   +|+|+
T Consensus        86 ~~~L~~~~~~~--------~~~~~~~~~~~~~i~~~l~~lH~~---~ivH~  125 (277)
T cd06642          86 GGSALDLLKPG--------PLEETYIATILREILKGLDYLHSE---RKIHR  125 (277)
T ss_pred             CCcHHHHhhcC--------CCCHHHHHHHHHHHHHHHHHHhcC---Ceecc
Confidence            99999998653        477888899999999999999988   99996

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.66  E-value=1.4e-16  Score=147.61  Aligned_cols=116  Identities=23%  Similarity=0.334  Sum_probs=98.1

Q ss_pred             CeeCcCCceEEEEEEeC-C-------CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          294 NILGRGGFGKVYKGRLT-D-------GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~-~-------g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      +.||+|+||.||+|... .       ...||+|.+... .....++|.+|+.+++.++|||++++++++..++..++|||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   79 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKS-HRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQE   79 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcch-hHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEe
Confidence            46899999999999863 2       234888887432 22234578999999999999999999999999899999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.++++....      .+++..+..++.||+.||+|||+.   +|+||
T Consensus        80 ~~~~g~L~~~l~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~iiH~  124 (258)
T cd05078          80 YVKFGSLDTYLKKNKN------LINISWKLEVAKQLAWALHFLEDK---GLTHG  124 (258)
T ss_pred             cCCCCcHHHHHhcCCC------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            9999999999986542      477888899999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.66  E-value=6.5e-16  Score=142.74  Aligned_cols=123  Identities=11%  Similarity=0.181  Sum_probs=104.8

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      +|+..+.||+|+||.||++... +++.+|+|.++........+.+.+|+.++++++|+|++++.+++.+.+..++||||+
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYC   80 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeC
Confidence            3566789999999999999964 688999999854333334567889999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|.+++.....     ..+++.....++.|+++||.|||+.   +|+|+
T Consensus        81 ~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~i~~al~~lH~~---~i~H~  124 (255)
T cd08219          81 DGGDLMQKIKLQRG-----KLFPEDTILQWFVQMCLGVQHIHEK---RVLHR  124 (255)
T ss_pred             CCCcHHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHhhC---CcccC
Confidence            99999998875331     1467788889999999999999998   99996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.66  E-value=4.9e-16  Score=152.10  Aligned_cols=120  Identities=19%  Similarity=0.242  Sum_probs=102.0

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC-----cee
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT-----ERL  361 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----~~~  361 (419)
                      +|+..+.||+|+||.||++.. .+|+.||||++.... .....+.+.+|+++++.++|+||+++++++..++     ..+
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            467789999999999999996 478999999985432 1223457889999999999999999999998876     789


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|+||++ ++|.+++....       .+++..+..++.||+.||+|||+.   +|+||
T Consensus        81 lv~e~~~-~~l~~~~~~~~-------~l~~~~~~~~~~qi~~aL~~LH~~---~ivH~  127 (372)
T cd07853          81 VVTELMQ-SDLHKIIVSPQ-------PLSSDHVKVFLYQILRGLKYLHSA---GILHR  127 (372)
T ss_pred             EEeeccc-cCHHHHHhcCC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeeCC
Confidence            9999997 58888876543       578888999999999999999999   99997

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.66  E-value=7e-16  Score=144.69  Aligned_cols=122  Identities=21%  Similarity=0.358  Sum_probs=104.0

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-----CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEec--CCcee
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT--PTERL  361 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-----~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~  361 (419)
                      .|...+.||+|+||.||++.+.     ++..||||.++........+.|.+|++.++.++|+||+++++++..  ....+
T Consensus         5 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~   84 (284)
T cd05038           5 HLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLR   84 (284)
T ss_pred             hchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceE
Confidence            4566688999999999999863     3679999999644332235689999999999999999999999987  55789


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++|+|.++++....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus        85 lv~e~~~~~~l~~~l~~~~~------~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~  133 (284)
T cd05038          85 LIMEYLPSGSLRDYLQRHRD------QINLKRLLLFSSQICKGMDYLGSQ---RYIHR  133 (284)
T ss_pred             EEEecCCCCCHHHHHHhCcc------ccCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            99999999999999986532      588889999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.66  E-value=8.3e-16  Score=142.59  Aligned_cols=122  Identities=16%  Similarity=0.319  Sum_probs=105.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc----ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT----QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~----~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      ++|...+.||+|+||.||++.. .+++.||+|.+.....    ....+.+.+|++++.+++||||+++++++.+.+..++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            4688889999999999999996 4689999999853321    1123568899999999999999999999999999999


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+||+++|+|.+++....       .+++..+..++.|++.|+.|||+.   +|+||
T Consensus        82 v~e~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~  128 (263)
T cd06625          82 FMEYMPGGSVKDQLKAYG-------ALTETVTRKYTRQILEGVEYLHSN---MIVHR  128 (263)
T ss_pred             EEEECCCCcHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            999999999999987643       467788889999999999999999   99997

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.66  E-value=7.6e-16  Score=147.90  Aligned_cols=116  Identities=19%  Similarity=0.263  Sum_probs=95.7

Q ss_pred             CeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHH-HHhcCCCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVE-MISMAVHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~-~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      +.||+|+||.||+++.. +++.||+|++.....  ......+..|.. +++.++|+||+++++++...+..++||||+++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            46999999999999974 678999999854321  122334555554 56789999999999999999999999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|.+++....       .+.+..+..++.||++||+|||+.   +|+||
T Consensus        81 ~~L~~~~~~~~-------~~~~~~~~~~~~qi~~~L~~lH~~---giiHr  120 (325)
T cd05602          81 GELFYHLQRER-------CFLEPRARFYAAEIASALGYLHSL---NIVYR  120 (325)
T ss_pred             CcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEec
Confidence            99999997653       466777888999999999999999   99998

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.66  E-value=5.8e-16  Score=152.31  Aligned_cols=114  Identities=14%  Similarity=0.145  Sum_probs=101.0

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ..|...+.||+|+||.||++.. .+++.||+|...       ...+.+|++++++++|||||++++++......++|+||
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~-------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~  164 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ-------RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPR  164 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh-------hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEec
Confidence            5688889999999999999996 478999999753       23578999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +. |+|.+++....       .+++.++..++.||+.||+|||+.   +||||
T Consensus       165 ~~-~~L~~~l~~~~-------~l~~~~~~~i~~qi~~aL~ylH~~---~IvHr  206 (391)
T PHA03212        165 YK-TDLYCYLAAKR-------NIAICDILAIERSVLRAIQYLHEN---RIIHR  206 (391)
T ss_pred             CC-CCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            96 68998887653       577888999999999999999999   99998

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.66  E-value=8.1e-16  Score=142.43  Aligned_cols=114  Identities=20%  Similarity=0.294  Sum_probs=96.7

Q ss_pred             eeCcCCceEEEEEEe---CCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCC
Q 014778          295 ILGRGGFGKVYKGRL---TDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNG  370 (419)
Q Consensus       295 ~lG~G~fg~Vy~~~~---~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~G  370 (419)
                      .||+|+||.||+|.+   .++..+|+|+++.... ....++|.+|+.+++.++|+||++++|++. .+..++||||+++|
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~   80 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAELG   80 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCCCC
Confidence            589999999999975   3578999999864322 223467999999999999999999999985 45678999999999


Q ss_pred             ChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          371 SVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       371 sL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|.+++....       .+++..+..++.|++.|++|||+.   +|+||
T Consensus        81 ~L~~~l~~~~-------~~~~~~~~~i~~qi~~al~~lH~~---~i~H~  119 (257)
T cd05116          81 PLNKFLQKNK-------HVTEKNITELVHQVSMGMKYLEET---NFVHR  119 (257)
T ss_pred             cHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CEeec
Confidence            9999997543       577888999999999999999988   99997

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.66  E-value=9.7e-16  Score=143.88  Aligned_cols=123  Identities=23%  Similarity=0.389  Sum_probs=105.2

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      +|+..+.||+|++|.||+|+.. +|+.||||+++..........+.+|++++++++|+|++++++++...+..++||||+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYM   80 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecC
Confidence            4677789999999999999975 688999999965443334567889999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++ +|.+++.....    ...+++.++..++.|++.||+|||+.   +|+||
T Consensus        81 ~~-~l~~~~~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~h~  124 (284)
T cd07836          81 DK-DLKKYMDTHGV----RGALDPNTVKSFTYQLLKGIAFCHEN---RVLHR  124 (284)
T ss_pred             Cc-cHHHHHHhcCC----CCCcCHHHHHHHHHHHHHHHHHHHHC---CeeeC
Confidence            85 89988875431    12588899999999999999999988   89997

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.66  E-value=7.3e-16  Score=145.31  Aligned_cols=128  Identities=23%  Similarity=0.407  Sum_probs=105.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCcee
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  361 (419)
                      .+|...+.||+|+||.||++...      ++..+|+|.++... ....+.+.+|++++.+++|||++++++++...+..+
T Consensus         5 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   83 (288)
T cd05093           5 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDAS-DNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI   83 (288)
T ss_pred             HHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcC-HHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccE
Confidence            46777899999999999999842      34579999985432 223557999999999999999999999999999999


Q ss_pred             EEeccCCCCChhhhhcCCccc------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIV------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++|+|.++++.....      ......+++.++..++.|++.||+|||+.   +|+||
T Consensus        84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~---~i~H~  144 (288)
T cd05093          84 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQ---HFVHR  144 (288)
T ss_pred             EEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---Ceeec
Confidence            999999999999999754310      11222589999999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.65  E-value=9e-16  Score=143.25  Aligned_cols=123  Identities=24%  Similarity=0.426  Sum_probs=101.1

Q ss_pred             CeeCcCCceEEEEEEeC-CCC--EEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRLT-DGS--LVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~-~g~--~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      ++||+|+||.||+|... ++.  .+|+|.++........+.+.+|++++.++ +|||++++++++...+..++||||+++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            46899999999999974 444  57889886433333456789999999999 899999999999999999999999999


Q ss_pred             CChhhhhcCCcccc---------CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVS---------GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~---------~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|.++++......         .....+++.++..++.|++.|++|||+.   +|+||
T Consensus        81 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~---~i~H~  136 (270)
T cd05047          81 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHR  136 (270)
T ss_pred             CcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeec
Confidence            99999997643211         1123578889999999999999999988   99997

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.65  E-value=7.5e-16  Score=142.87  Aligned_cols=117  Identities=25%  Similarity=0.376  Sum_probs=96.1

Q ss_pred             CeeCcCCceEEEEEEeC----CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEec-CCceeEEeccCC
Q 014778          294 NILGRGGFGKVYKGRLT----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT-PTERLLVYPFMV  368 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~~~lv~e~~~  368 (419)
                      +.||+|+||.||+|...    ++..||+|++.........+.|.+|+.+++.++|||+++++++|.. ++..++|+||++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~   80 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK   80 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence            46899999999999853    2457999998543333335678999999999999999999998864 456789999999


Q ss_pred             CCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          369 NGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       369 ~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|+|.++++....      ...+...+.++.|+++|++|||+.   +|+||
T Consensus        81 ~~~L~~~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  122 (262)
T cd05058          81 HGDLRNFIRSETH------NPTVKDLIGFGLQVAKGMEYLASK---KFVHR  122 (262)
T ss_pred             CCCHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHhC---Ccccc
Confidence            9999999976432      356667788999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.65  E-value=4.8e-16  Score=144.61  Aligned_cols=126  Identities=17%  Similarity=0.256  Sum_probs=105.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|+..+.||+|+||.||++.. .+++.+|||.+.....  .....+|.+|+.+++.++|+||+++++++..++..+++|
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            3566778999999999999995 5789999998853221  222457899999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.++++....   ....+++.++..++.||+.|++|||+.   +|+||
T Consensus        82 e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~  130 (267)
T cd08229          82 ELADAGDLSRMIKHFKK---QKRLIPEKTVWKYFVQLCSALEHMHSR---RVMHR  130 (267)
T ss_pred             EecCCCCHHHHHHHhhc---cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            99999999999874321   112578889999999999999999998   99997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.65  E-value=4.9e-16  Score=144.62  Aligned_cols=121  Identities=21%  Similarity=0.246  Sum_probs=104.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ++|...+.||+|+||.||+|.. .+++.||+|.++... ......+.+|+.++..++|||++++++++...+..++|+||
T Consensus         9 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~-~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~   87 (267)
T cd06645           9 EDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEP-GEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEF   87 (267)
T ss_pred             HHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCc-hhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEec
Confidence            3555667899999999999996 468899999985432 22334688999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.++++...       .+++.+...++.|++.|++|||+.   +|+||
T Consensus        88 ~~~~~L~~~~~~~~-------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  130 (267)
T cd06645          88 CGGGSLQDIYHVTG-------PLSESQIAYVSRETLQGLYYLHSK---GKMHR  130 (267)
T ss_pred             cCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            99999999987553       578888999999999999999999   99997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.65  E-value=6.4e-16  Score=144.14  Aligned_cols=122  Identities=20%  Similarity=0.265  Sum_probs=102.0

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCC----CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTD----GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      ++|...+.||+|+||.||+|...+    ...||||...........+.|.+|+.++++++|||++++++++.+ +..++|
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~lv   84 (270)
T cd05056           6 EDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPVWIV   84 (270)
T ss_pred             hhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCcEEE
Confidence            356677899999999999998643    246899998644333345679999999999999999999999875 457899


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.+++.....      .+++..+..++.|++.|++|||+.   +++||
T Consensus        85 ~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~~l~~~l~~lH~~---~~~H~  131 (270)
T cd05056          85 MELAPLGELRSYLQVNKY------SLDLASLILYSYQLSTALAYLESK---RFVHR  131 (270)
T ss_pred             EEcCCCCcHHHHHHhCCC------CCCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            999999999999976431      478889999999999999999988   99997

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.65  E-value=6.7e-16  Score=144.68  Aligned_cols=120  Identities=19%  Similarity=0.331  Sum_probs=103.7

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      .|+..+.||+|+||.||+|... ++..||+|.+...........+.+|+.++++++|+|++++++++.+....++||||+
T Consensus         5 ~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   84 (277)
T cd06640           5 LFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYL   84 (277)
T ss_pred             hhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecC
Confidence            4556688999999999999964 688999999864333334567999999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|.++++..        .+++.+...++.|++.|++|||+.   +|+|+
T Consensus        85 ~~~~L~~~i~~~--------~l~~~~~~~~~~~l~~~l~~lh~~---~ivH~  125 (277)
T cd06640          85 GGGSALDLLRAG--------PFDEFQIATMLKEILKGLDYLHSE---KKIHR  125 (277)
T ss_pred             CCCcHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHhC---CccCc
Confidence            999999998753        367778888999999999999998   99996

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.65  E-value=7.9e-16  Score=145.18  Aligned_cols=124  Identities=22%  Similarity=0.292  Sum_probs=103.9

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++++|...+.||+|+||.||+|... +|+.||+|+++..........+.+|+.+++.++|+||+++.+++..++..++|+
T Consensus         3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   82 (291)
T cd07870           3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVF   82 (291)
T ss_pred             ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEE
Confidence            3567888899999999999999864 688999999865433334457889999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||++ +++.+++.....      .+.+.++..++.||++||+|||+.   +|+||
T Consensus        83 e~~~-~~l~~~~~~~~~------~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~  127 (291)
T cd07870          83 EYMH-TDLAQYMIQHPG------GLHPYNVRLFMFQLLRGLAYIHGQ---HILHR  127 (291)
T ss_pred             eccc-CCHHHHHHhCCC------CCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            9996 688777754321      356677888999999999999998   99997

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.65  E-value=6.1e-16  Score=145.77  Aligned_cols=125  Identities=16%  Similarity=0.203  Sum_probs=103.5

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecC--CceeEEec
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP--TERLLVYP  365 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv~e  365 (419)
                      +|...+.||.|++|.||++... +++.+|+|.+..........++.+|++++++++||||++++++|...  +..++|||
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e   81 (287)
T cd06621           2 KIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAME   81 (287)
T ss_pred             ceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEE
Confidence            5677789999999999999974 68899999986443333456799999999999999999999998664  35799999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++.....   ....++......++.|+++||.|||+.   +|+||
T Consensus        82 ~~~~~~L~~~l~~~~~---~~~~l~~~~~~~i~~~i~~~L~~lH~~---~i~H~  129 (287)
T cd06621          82 YCEGGSLDSIYKKVKK---RGGRIGEKVLGKIAESVLKGLSYLHSR---KIIHR  129 (287)
T ss_pred             ecCCCCHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            9999999998764321   122577888899999999999999998   99997

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.65  E-value=4.2e-16  Score=157.44  Aligned_cols=123  Identities=10%  Similarity=0.082  Sum_probs=102.0

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-C-CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-D-GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~-g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      |...+.||+|+||.||+|... + +..||+|.+... .......+.+|+.+++.++|||||++++++...+..++||||+
T Consensus        69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~-~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~  147 (478)
T PTZ00267         69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLN-DERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYG  147 (478)
T ss_pred             EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccC-CHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECC
Confidence            677789999999999999853 4 678888877432 2222346788999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|.++++....   ....+++.++..++.||+.||+|||+.   +|+||
T Consensus       148 ~gg~L~~~l~~~~~---~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivHr  193 (478)
T PTZ00267        148 SGGDLNKQIKQRLK---EHLPFQEYEVGLLFYQIVLALDEVHSR---KMMHR  193 (478)
T ss_pred             CCCCHHHHHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHhC---CEEEC
Confidence            99999998864321   111477888889999999999999998   99998

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.65  E-value=8.1e-16  Score=146.26  Aligned_cols=121  Identities=14%  Similarity=0.225  Sum_probs=104.9

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      +|...+.||+|+||.||++... +++.||+|.+.....  ......+.+|++++..++||||+++++.+..++..++|||
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (305)
T cd05609           2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVME   81 (305)
T ss_pred             CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEe
Confidence            5777899999999999999964 578999999864321  2234578899999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++....       .+++..+..++.|+++|++|||+.   +|+||
T Consensus        82 ~~~g~~L~~~l~~~~-------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  125 (305)
T cd05609          82 YVEGGDCATLLKNIG-------ALPVDMARMYFAETVLALEYLHNY---GIVHR  125 (305)
T ss_pred             cCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            999999999997643       477888888999999999999998   99997

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.65  E-value=1e-15  Score=145.13  Aligned_cols=120  Identities=17%  Similarity=0.266  Sum_probs=105.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ..|...+.||+|+||.||++.. .+++.||+|.+.... ....+.+.+|+.+++.++|+|++++++++...+..++||||
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   97 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQ-QPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   97 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCc-cchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeecc
Confidence            5677789999999999999995 578999999985332 22345788999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.+++...        .+++.++..++.|++.||.|||+.   +|+||
T Consensus        98 ~~~~~L~~~~~~~--------~~~~~~~~~~~~~l~~~L~~LH~~---~i~H~  139 (297)
T cd06656          98 LAGGSLTDVVTET--------CMDEGQIAAVCRECLQALDFLHSN---QVIHR  139 (297)
T ss_pred             cCCCCHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            9999999998653        367778899999999999999998   99997

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.65  E-value=8.8e-16  Score=143.16  Aligned_cols=126  Identities=25%  Similarity=0.427  Sum_probs=102.2

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-C---CCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc-----
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-D---GSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE-----  359 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~---g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~-----  359 (419)
                      |...+.||+|+||.||+|... +   +..||+|+++.... .....++.+|++.++.++|+|++++++++...+.     
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            455688999999999999964 2   36899999864322 2224579999999999999999999999877554     


Q ss_pred             -eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 -RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 -~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                       .++++||+++|+|.+++...... .....+++..+..++.|++.||+|||+.   +|+||
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~i~~aL~~lH~~---~i~H~  137 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYSRLG-GLPEKLPLQTLLKFMVDIALGMEYLSNR---NFIHR  137 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHhhcc-CCcccCCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence             68999999999999998654321 1223688889999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.65  E-value=4.3e-16  Score=146.56  Aligned_cols=125  Identities=18%  Similarity=0.255  Sum_probs=105.3

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      +|+..+.||+|+||.||++... +|..||+|.++..........+.+|++++.+++|+||+++++++...+..++|+||+
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   81 (286)
T cd06622           2 EIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYM   81 (286)
T ss_pred             hhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeec
Confidence            4666789999999999999975 789999999864322223457899999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++++|.++++....    ...+++..+..++.|+++||.|||+.+  +|+||
T Consensus        82 ~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~i~~~l~~LH~~~--~i~H~  127 (286)
T cd06622          82 DAGSLDKLYAGGVA----TEGIPEDVLRRITYAVVKGLKFLKEEH--NIIHR  127 (286)
T ss_pred             CCCCHHHHHHhccc----cCCCCHHHHHHHHHHHHHHHHHHHhcC--CEeeC
Confidence            99999999876421    125788899999999999999999632  79997

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.65  E-value=1.8e-16  Score=152.02  Aligned_cols=124  Identities=17%  Similarity=0.291  Sum_probs=107.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc-eeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE-RLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~-~~lv~  364 (419)
                      ++|...+++|+|+||.++..+.+ +++.+++|.+.-... ...++...+|+.++++++|||||.+...+..++. .+|||
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm   83 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVM   83 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEE
Confidence            45677799999999999988754 678999999964432 2334578899999999999999999999999888 89999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|++||++.+.+..+++     ..+++...+.++.|++.|+.|||++   +|+||
T Consensus        84 ~Y~eGg~l~~~i~~~k~-----~~f~E~~i~~~~~Q~~~av~ylH~~---~iLHR  130 (426)
T KOG0589|consen   84 EYCEGGDLAQLIKEQKG-----VLFPEERILKWFVQILLAVNYLHEN---RVLHR  130 (426)
T ss_pred             eecCCCCHHHHHHHHhh-----ccccHHHHHHHHHHHHHHHHHHHhh---hhhcc
Confidence            99999999999988763     2789999999999999999999998   99998

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.65  E-value=9.4e-16  Score=141.72  Aligned_cols=123  Identities=17%  Similarity=0.286  Sum_probs=105.5

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +|+..++||+|+||.||.+.. .+++.+++|.+.... .....+++.+|++++++++|+||+++++++.+.+..+++|||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~   80 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEY   80 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEe
Confidence            366778999999999999885 468899999985332 233456789999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.+++....     ...+++.++..++.|+++|+.|||+.   +|+||
T Consensus        81 ~~~~~L~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~  125 (256)
T cd08221          81 ANGGTLYDKIVRQK-----GQLFEEEMVLWYLFQIVSAVSYIHKA---GILHR  125 (256)
T ss_pred             cCCCcHHHHHHhcc-----ccCCCHHHHHHHHHHHHHHHHHHHhC---Ccccc
Confidence            99999999998653     12578889999999999999999988   89997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.65  E-value=6.7e-16  Score=143.23  Aligned_cols=122  Identities=20%  Similarity=0.294  Sum_probs=104.5

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      .+.|...+.||+|+||.||++...++..+|+|.+....  .....|.+|++++++++|+|++++.+++.. ...+++|||
T Consensus         5 ~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e~   81 (260)
T cd05073           5 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS--MSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEF   81 (260)
T ss_pred             ccceeEEeEecCccceEEEEEEecCCccEEEEecCCCh--hHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEEe
Confidence            45677789999999999999998777889999886432  234579999999999999999999999887 778999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.+++.....     ...++..+..++.|++.|++|||+.   +++||
T Consensus        82 ~~~~~L~~~~~~~~~-----~~~~~~~~~~~~~~l~~aL~~lH~~---~i~H~  126 (260)
T cd05073          82 MAKGSLLDFLKSDEG-----SKQPLPKLIDFSAQIAEGMAFIEQR---NYIHR  126 (260)
T ss_pred             CCCCcHHHHHHhCCc-----cccCHHHHHHHHHHHHHHHHHHHhC---Ccccc
Confidence            999999999976431     2577888899999999999999988   99997

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.65  E-value=4.2e-16  Score=150.48  Aligned_cols=131  Identities=23%  Similarity=0.309  Sum_probs=104.3

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecC-
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTP-  357 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~-  357 (419)
                      +.+.|...+.||+|+||.||+|...      +++.||+|+++........+.+.+|+.++.++ +|+||++++++|... 
T Consensus         5 ~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~   84 (337)
T cd05054           5 PRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPG   84 (337)
T ss_pred             CHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCC
Confidence            3456778899999999999999742      35789999996443333345688999999999 899999999988764 


Q ss_pred             CceeEEeccCCCCChhhhhcCCcccc------------------------------------------------------
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIVS------------------------------------------------------  383 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~~------------------------------------------------------  383 (419)
                      ...++++||+++|+|.++++......                                                      
T Consensus        85 ~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (337)
T cd05054          85 GPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDE  164 (337)
T ss_pred             CCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhH
Confidence            56789999999999999986432100                                                      


Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          384 GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       384 ~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .....+++..+..++.||+.||+|||+.   +|+||
T Consensus       165 ~~~~~l~~~~~~~~~~qi~~aL~~lH~~---~ivHr  197 (337)
T cd05054         165 LYKEPLTLEDLISYSFQVARGMEFLASR---KCIHR  197 (337)
T ss_pred             HhhcCCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            0012578899999999999999999999   99997

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.65  E-value=4.1e-16  Score=146.67  Aligned_cols=134  Identities=18%  Similarity=0.273  Sum_probs=109.4

Q ss_pred             ccHHHHHHHhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEe
Q 014778          278 FSLRELQVATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCM  355 (419)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~  355 (419)
                      +.++.+..+.++|+..+.||+|+||.||++.. .+++.+|+|.++...  ....++.+|+.++.++ +|+|++++++++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~--~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   85 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH--DIDEEIEAEYNILKALSDHPNVVKFYGMYY   85 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc--chHHHHHHHHHHHHHHhcCCCeeeeeeeee
Confidence            44566677888999999999999999999996 468899999885321  2245788999999999 6999999999885


Q ss_pred             c-----CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          356 T-----PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       356 ~-----~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .     .+..++||||+++|+|.++++....   ....+++..+..++.|+++|+.|||+.   +|+||
T Consensus        86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  148 (286)
T cd06638          86 KKDVKNGDQLWLVLELCNGGSVTDLVKGFLK---RGERMEEPIIAYILHEALMGLQHLHVN---KTIHR  148 (286)
T ss_pred             ecccCCCCeEEEEEeecCCCCHHHHHHHhhc---cCccccHHHHHHHHHHHHHHHHHHHhC---Ccccc
Confidence            3     3567999999999999998864321   112578888899999999999999998   89997

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.65  E-value=6.7e-16  Score=148.81  Aligned_cols=129  Identities=19%  Similarity=0.289  Sum_probs=105.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC--------CCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCC
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT--------DGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPT  358 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  358 (419)
                      ..|...+.||+|+||.||++...        .+..||+|.++........+++.+|+.++.++ +|+||++++++|...+
T Consensus        12 ~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~   91 (334)
T cd05100          12 TRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG   91 (334)
T ss_pred             hHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCC
Confidence            35677799999999999999742        12368999886433333356799999999999 8999999999999999


Q ss_pred             ceeEEeccCCCCChhhhhcCCccc---------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 ERLLVYPFMVNGSVASCLRGMFIV---------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 ~~~lv~e~~~~GsL~~~L~~~~~~---------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..++++||+++|+|.+++......         ......+.+.+++.++.|+++||.|||+.   +|+||
T Consensus        92 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---givH~  158 (334)
T cd05100          92 PLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQ---KCIHR  158 (334)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            999999999999999999764311         01223578889999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.65  E-value=1.2e-15  Score=141.10  Aligned_cols=121  Identities=23%  Similarity=0.376  Sum_probs=105.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      .+|+..+.||+|+||.||++...++..+|+|.++...  ....+|.+|++++++++|||++++++++......++|+||+
T Consensus         4 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   81 (256)
T cd05112           4 SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGA--MSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFM   81 (256)
T ss_pred             hHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCC--CCHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcC
Confidence            3566678999999999999998778899999985332  23567999999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|.++++....      .+++..+..++.|++.|++|||+.   +|+||
T Consensus        82 ~~~~L~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~  124 (256)
T cd05112          82 EHGCLSDYLRAQRG------KFSQETLLGMCLDVCEGMAYLESS---NVIHR  124 (256)
T ss_pred             CCCcHHHHHHhCcc------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            99999999976432      467888899999999999999998   89997

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.65  E-value=1.1e-15  Score=144.79  Aligned_cols=120  Identities=16%  Similarity=0.266  Sum_probs=104.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ..|...+.||+|+||.||+|.. .+++.||+|.+.... ....+.+.+|+.+++.++|+|++++++++......++||||
T Consensus        20 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~-~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~   98 (296)
T cd06654          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQ-QPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (296)
T ss_pred             cceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCC-cchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecc
Confidence            3567778899999999999995 468899999985432 22346789999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.++++..        .+++.+...++.|++.|++|||+.   +|+||
T Consensus        99 ~~~~~L~~~~~~~--------~~~~~~~~~i~~ql~~aL~~LH~~---gi~H~  140 (296)
T cd06654          99 LAGGSLTDVVTET--------CMDEGQIAAVCRECLQALEFLHSN---QVIHR  140 (296)
T ss_pred             cCCCCHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            9999999998653        367788899999999999999999   99997

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.65  E-value=6.5e-16  Score=144.11  Aligned_cols=124  Identities=22%  Similarity=0.356  Sum_probs=104.0

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecC------
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTP------  357 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~------  357 (419)
                      +++.|...+.||+|+||.||+|... +++.||+|++...  ......+.+|+.++.++ +|+|++++.+++...      
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~--~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (272)
T cd06637           4 PAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT--GDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMD   81 (272)
T ss_pred             hhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcC--CccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCC
Confidence            5566777889999999999999964 6889999998533  23456789999999998 799999999998753      


Q ss_pred             CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ...++||||+++|+|.+++.....     ..+++..+..++.|++.|++|||++   +|+||
T Consensus        82 ~~~~iv~e~~~~~~L~~~l~~~~~-----~~l~~~~~~~~~~qi~~~l~~LH~~---~ivh~  135 (272)
T cd06637          82 DQLWLVMEFCGAGSVTDLIKNTKG-----NTLKEEWIAYICREILRGLSHLHQH---KVIHR  135 (272)
T ss_pred             cEEEEEEEcCCCCcHHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CCccC
Confidence            357899999999999999986431     2577888899999999999999998   99997

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.65  E-value=1e-15  Score=141.06  Aligned_cols=117  Identities=22%  Similarity=0.356  Sum_probs=102.2

Q ss_pred             CeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCChh
Q 014778          294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVA  373 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~GsL~  373 (419)
                      +.||+|+||.||++...+++.||+|.++..........|.+|++++++++|+||+++++++......++|+||+++++|.
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~   80 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLL   80 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHH
Confidence            46899999999999986699999999865433334567999999999999999999999999999999999999999999


Q ss_pred             hhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          374 SCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       374 ~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++++....      .+++.....++.|++.|++|||+.   +|+||
T Consensus        81 ~~l~~~~~------~~~~~~~~~~~~~~~~~l~~lH~~---~i~h~  117 (251)
T cd05041          81 TFLRKKKN------RLTVKKLLQMSLDAAAGMEYLESK---NCIHR  117 (251)
T ss_pred             HHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHhC---CEehh
Confidence            99976431      467788889999999999999999   89997

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.65  E-value=1.1e-15  Score=141.17  Aligned_cols=120  Identities=18%  Similarity=0.276  Sum_probs=106.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ++|+..+.||+|+||.||+|... +++.+|+|.++....   .+++.+|++.+++++|+|++++++++......++++||
T Consensus         3 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~---~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~   79 (256)
T cd06612           3 EVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED---LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEY   79 (256)
T ss_pred             ccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH---HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEec
Confidence            56778889999999999999975 478999999864322   56899999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++++|.+++....      ..+++..+..++.|++.|+.|||+.   +|+||
T Consensus        80 ~~~~~L~~~l~~~~------~~l~~~~~~~~~~~l~~~l~~lh~~---~i~H~  123 (256)
T cd06612          80 CGAGSVSDIMKITN------KTLTEEEIAAILYQTLKGLEYLHSN---KKIHR  123 (256)
T ss_pred             CCCCcHHHHHHhCc------cCCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            99999999987533      1578889999999999999999998   89997

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.65  E-value=1e-15  Score=143.62  Aligned_cols=125  Identities=14%  Similarity=0.220  Sum_probs=101.2

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHH-HhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEM-ISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~-l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +|+..+.||+|+||.||++... +|+.||+|+++.........++..|+.. ++..+|||++++++++..++..+++|||
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~   81 (283)
T cd06617           2 DLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICMEV   81 (283)
T ss_pred             CceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhhh
Confidence            5777889999999999999974 6999999998644332334566677765 6667999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++ |+|.++++.....   ...+++..+..++.||+.||+|||+++  +|+||
T Consensus        82 ~~-~~l~~~l~~~~~~---~~~~~~~~~~~~~~qi~~~l~~lH~~~--~i~h~  128 (283)
T cd06617          82 MD-TSLDKFYKKVYDK---GLTIPEDILGKIAVSIVKALEYLHSKL--SVIHR  128 (283)
T ss_pred             hc-ccHHHHHHHhccC---CCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecC
Confidence            97 6898888653211   126889999999999999999999752  68997

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.65  E-value=9.2e-16  Score=160.62  Aligned_cols=122  Identities=22%  Similarity=0.340  Sum_probs=105.6

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...+.||+|+||.||+|... +++.||||+++....  ......+.+|+.++..++|+||+++++++...+..++||
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVm   83 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVM   83 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEE
Confidence            46777899999999999999975 689999999964321  112357889999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.++++...       .+.+..+..++.||+.||+|||..   +||||
T Consensus        84 Ey~~g~~L~~li~~~~-------~l~~~~~~~i~~qil~aL~yLH~~---gIiHr  128 (669)
T cd05610          84 EYLIGGDVKSLLHIYG-------YFDEEMAVKYISEVALALDYLHRH---GIIHR  128 (669)
T ss_pred             eCCCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CEEeC
Confidence            9999999999997643       467778899999999999999998   99998

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.65  E-value=1.2e-15  Score=141.03  Aligned_cols=123  Identities=29%  Similarity=0.444  Sum_probs=103.8

Q ss_pred             CeeCcCCceEEEEEEeCC----CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRLTD----GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      +.||+|+||.||+|....    +..||+|.++........+.+.+|++.+..++|+|++++++++......++|+||+++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence            468999999999999753    7899999996544333467899999999999999999999999999999999999999


Q ss_pred             CChhhhhcCCccc--cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIV--SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~--~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|.+++......  ......+++.++..++.|+++|++|||+.   +|+||
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~  129 (262)
T cd00192          81 GDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASK---KFVHR  129 (262)
T ss_pred             CcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcC---CcccC
Confidence            9999999875210  00012688999999999999999999998   99997

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.64  E-value=1.2e-15  Score=144.37  Aligned_cols=120  Identities=19%  Similarity=0.342  Sum_probs=103.3

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc----cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ----GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~----~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      |+..+.||+|+||.||+|... +|+.||||+++.....    .....+..|++++++++|+|++++++++.+.+..++||
T Consensus         2 y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   81 (298)
T cd07841           2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVF   81 (298)
T ss_pred             ceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEE
Confidence            566788999999999999964 6899999999644322    12346788999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+ +|+|.++++...      ..+++..+..++.||++||+|||++   +|+||
T Consensus        82 e~~-~~~L~~~i~~~~------~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~  126 (298)
T cd07841          82 EFM-ETDLEKVIKDKS------IVLTPADIKSYMLMTLRGLEYLHSN---WILHR  126 (298)
T ss_pred             ccc-CCCHHHHHhccC------CCCCHHHHHHHHHHHHHHHHHHHhC---Ceeec
Confidence            999 899999997653      1478889999999999999999999   99997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.64  E-value=1.2e-15  Score=141.78  Aligned_cols=122  Identities=16%  Similarity=0.321  Sum_probs=101.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc-c---cCHHHHHHHHHHHhcCCCCCCcceeEEEecC--Cce
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT-Q---GGELQFQTEVEMISMAVHRNLLRLRGFCMTP--TER  360 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~  360 (419)
                      .+|...+.||+|+||.||+|.. .+|..||+|.+..... .   ...+.+.+|+.++.+++||||+++++++.+.  ...
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            3677789999999999999996 4689999998853211 1   1234688999999999999999999988764  457


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++++||+++|+|.+++....       .+++....+++.|++.||+|||+.   +|+||
T Consensus        82 ~~v~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~~l~~~l~~lH~~---~i~H~  130 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSYG-------ALTENVTRKYTRQILEGVSYLHSN---MIVHR  130 (265)
T ss_pred             EEEEEecCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CEecC
Confidence            79999999999999987543       466777889999999999999998   89996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.64  E-value=1.3e-15  Score=142.05  Aligned_cols=125  Identities=25%  Similarity=0.440  Sum_probs=98.9

Q ss_pred             CCCCeeCcCCceEEEEEEeCC-CC--EEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecC------Cce
Q 014778          291 SNRNILGRGGFGKVYKGRLTD-GS--LVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP------TER  360 (419)
Q Consensus       291 ~~~~~lG~G~fg~Vy~~~~~~-g~--~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~~~  360 (419)
                      ...+.||+|+||.||+|...+ +.  .||+|.++... .....+.|.+|+++++.++|+||++++++|...      ...
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   81 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP   81 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence            345789999999999999753 33  68999986432 222345789999999999999999999988542      246


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++++||+++|+|.+++...... .....+++.....++.|++.|++|||++   +|+||
T Consensus        82 ~~v~e~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  136 (272)
T cd05075          82 VVILPFMKHGDLHSFLLYSRLG-DCPQYLPTQMLVKFMTDIASGMEYLSSK---SFIHR  136 (272)
T ss_pred             EEEEEeCCCCcHHHHHHHhccc-CCcccCCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            8999999999999988543211 2223578889999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.64  E-value=1.6e-15  Score=140.74  Aligned_cols=121  Identities=19%  Similarity=0.269  Sum_probs=102.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      +.|...+.||+|+||.||++...++..+|+|.+....  ...+.|.+|+.++++++|+|++++++++. .+..++||||+
T Consensus         6 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~   82 (260)
T cd05069           6 ESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGT--MMPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTEFM   82 (260)
T ss_pred             HHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCC--ccHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEEcC
Confidence            4566778999999999999998777789999985432  23467999999999999999999999875 45688999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|.++++....     ..+++..+..++.|++.||+|||+.   +|+||
T Consensus        83 ~~~~L~~~~~~~~~-----~~~~~~~~~~~~~~l~~al~~lH~~---~i~H~  126 (260)
T cd05069          83 GKGSLLDFLKEGDG-----KYLKLPQLVDMAAQIADGMAYIERM---NYIHR  126 (260)
T ss_pred             CCCCHHHHHhhCCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CEeec
Confidence            99999999976431     1467888899999999999999988   89997

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.64  E-value=1.1e-15  Score=142.76  Aligned_cols=120  Identities=17%  Similarity=0.274  Sum_probs=105.3

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      +|...+.||.|+||.||+|... +++.||+|.+...........+.+|+++++.++|+|++++.+++.++...++|+||+
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~   81 (274)
T cd06609           2 LFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYC   81 (274)
T ss_pred             hhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEee
Confidence            4666788999999999999964 688999999864433334567899999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|.++++..        .+++..+..++.|++.|+.|||+.   +|+||
T Consensus        82 ~~~~L~~~~~~~--------~~~~~~~~~~~~ql~~~l~~lh~~---~i~h~  122 (274)
T cd06609          82 GGGSCLDLLKPG--------KLDETYIAFILREVLLGLEYLHEE---GKIHR  122 (274)
T ss_pred             CCCcHHHHHhhc--------CCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            999999998754        477888999999999999999998   89997

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.64  E-value=1.2e-15  Score=142.78  Aligned_cols=120  Identities=18%  Similarity=0.365  Sum_probs=104.2

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCC---CCCCcceeEEEecCCceeEEe
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV---HRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~~~~~~lv~  364 (419)
                      .|+..+.||+|+||.||+|.. .+++.||+|.++.........++.+|+.++++++   |||++++++++......++||
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~   81 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIM   81 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEE
Confidence            356678899999999999996 5789999999864433344567889999999987   999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++++|.++++..        .+++..+..++.|++.||.|||+.   +|+||
T Consensus        82 e~~~~~~L~~~~~~~--------~l~~~~~~~i~~~i~~~l~~lh~~---~i~H~  125 (277)
T cd06917          82 EYAEGGSVRTLMKAG--------PIAEKYISVIIREVLVALKYIHKV---GVIHR  125 (277)
T ss_pred             ecCCCCcHHHHHHcc--------CCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            999999999998653        477888999999999999999998   99997

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.64  E-value=1.5e-15  Score=140.87  Aligned_cols=121  Identities=18%  Similarity=0.290  Sum_probs=106.9

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      +|...+.||+|++|.||++... +++.||||++...........+.+|+..+.+++|+|++++++++...+..++|+||+
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYM   81 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEec
Confidence            5777799999999999999975 589999999865433234568999999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhh-ccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKY-SCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~-~~~p~IiHR  419 (419)
                      ++++|.+++....       .+++.....++.|+++|++|||+ .   +++||
T Consensus        82 ~~~~L~~~l~~~~-------~l~~~~~~~~~~~l~~~l~~lh~~~---~~~H~  124 (264)
T cd06623          82 DGGSLADLLKKVG-------KIPEPVLAYIARQILKGLDYLHTKR---HIIHR  124 (264)
T ss_pred             CCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHhccC---CCccC
Confidence            9999999997653       57888899999999999999999 8   89997

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.64  E-value=1.6e-15  Score=140.71  Aligned_cols=120  Identities=18%  Similarity=0.329  Sum_probs=104.4

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc-cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      |+..+.||+|+||.||+|... +++.||+|.++..... ...+.+.+|+.++++++|+||+++++++...+..++|+||+
T Consensus         2 y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (264)
T cd06626           2 WQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYC   81 (264)
T ss_pred             ceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEecC
Confidence            566789999999999999964 6889999998643222 23567999999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++++|.++++...       .+++..+..++.|+++|++|||+.   +|+||
T Consensus        82 ~~~~L~~~~~~~~-------~~~~~~~~~i~~~i~~~l~~lh~~---~i~H~  123 (264)
T cd06626          82 SGGTLEELLEHGR-------ILDEHVIRVYTLQLLEGLAYLHSH---GIVHR  123 (264)
T ss_pred             CCCcHHHHHhhcC-------CCChHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            9999999998653       467778889999999999999998   89997

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.64  E-value=1.4e-15  Score=140.72  Aligned_cols=115  Identities=23%  Similarity=0.336  Sum_probs=98.2

Q ss_pred             CeeCcCCceEEEEEEeC--C--CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRLT--D--GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~--~--g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      +.||+|+||.||+|.+.  +  +..+|+|.++........+++.+|+.++++++|+|+|++++++.. +..++||||+++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKG-EPLMLVMELAPL   79 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcC-CceEEEEEeCCC
Confidence            46999999999999863  2  268999999654433345689999999999999999999998764 467999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|.+++....       .+++..+..++.|++.|++|||+.   +|+||
T Consensus        80 ~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lh~~---~i~H~  119 (257)
T cd05060          80 GPLLKYLKKRR-------EIPVSDLKELAHQVAMGMAYLESK---HFVHR  119 (257)
T ss_pred             CcHHHHHHhCC-------CCCHHHHHHHHHHHHHHHHHHhhc---Ceecc
Confidence            99999998654       578888999999999999999988   89997

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.64  E-value=2.1e-15  Score=141.60  Aligned_cols=123  Identities=20%  Similarity=0.411  Sum_probs=103.7

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +|...+.||+|+||.||+|+.. +++.||+|.++.... ....+.+.+|+.++.+++|||++++++++.+++..++|+||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEec
Confidence            3666789999999999999974 689999999864322 22345788999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++ |+|.++++....    ...+++.++..++.|+++||+|||+.   +|+||
T Consensus        81 ~~-~~l~~~~~~~~~----~~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~  125 (285)
T cd07861          81 LS-MDLKKYLDSLPK----GQYMDAELVKSYLYQILQGILFCHSR---RVLHR  125 (285)
T ss_pred             CC-CCHHHHHhcCCC----CCcCCHHHHHHHHHHHHHHHHHHHhC---Ceeec
Confidence            98 689988865321    12578888999999999999999998   99997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.64  E-value=7.6e-16  Score=142.55  Aligned_cols=121  Identities=17%  Similarity=0.251  Sum_probs=105.4

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      +|...+.||+|+||.||++... +++.||+|.+.....  ....+.+.+|++++++++||||+++++++.+.+..++|+|
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            3667789999999999999975 689999999964321  1335689999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++++|.+++....       .+++.++..++.|+++||.|||+.   +|+||
T Consensus        81 ~~~~~~L~~~l~~~~-------~l~~~~~~~~~~~i~~~l~~lh~~---~i~h~  124 (258)
T cd05578          81 LLLGGDLRYHLSQKV-------KFSEEQVKFWICEIVLALEYLHSK---GIIHR  124 (258)
T ss_pred             CCCCCCHHHHHHhcC-------CcCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            999999999997652       477888999999999999999988   89996

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.64  E-value=2.3e-15  Score=140.05  Aligned_cols=120  Identities=21%  Similarity=0.371  Sum_probs=102.4

Q ss_pred             CCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccccc--------CHHHHHHHHHHHhcCCCCCCcceeEEEecCCce
Q 014778          290 FSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQG--------GELQFQTEVEMISMAVHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~--------~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  360 (419)
                      |.....||+|+||.||+|.. .+++.||+|.+.......        ..+.+.+|+.++++++||||+++++++.+.+..
T Consensus         2 ~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   81 (267)
T cd06628           2 WIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHL   81 (267)
T ss_pred             ccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCcc
Confidence            45568899999999999986 468899999885332211        124688999999999999999999999999999


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+||+++++|.+++....       .+++..+..++.|++.|++|||+.   +|+||
T Consensus        82 ~lv~e~~~~~~L~~~l~~~~-------~l~~~~~~~~~~~l~~~l~~lH~~---~ivH~  130 (267)
T cd06628          82 NIFLEYVPGGSVAALLNNYG-------AFEETLVRNFVRQILKGLNYLHNR---GIIHR  130 (267)
T ss_pred             EEEEEecCCCCHHHHHHhcc-------CccHHHHHHHHHHHHHHHHHHHhc---Ccccc
Confidence            99999999999999997653       477788889999999999999998   99997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.64  E-value=9.3e-16  Score=144.05  Aligned_cols=127  Identities=22%  Similarity=0.266  Sum_probs=102.9

Q ss_pred             CCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          290 FSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      |...+.||+|+||.||+|...      +++.||+|+++..........|.+|+.++..++||||+++++++...+..+++
T Consensus         7 ~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~   86 (283)
T cd05091           7 VRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMI   86 (283)
T ss_pred             HHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEEE
Confidence            445578999999999999863      24789999996443322345689999999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccc---------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIV---------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~---------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||+++++|.+++......         ......+++..+..++.|++.||+|||+.   +|+||
T Consensus        87 ~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~---gi~H~  148 (283)
T cd05091          87 FSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSH---HVVHK  148 (283)
T ss_pred             EEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHc---Ccccc
Confidence            9999999999998632110         01122477888899999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.64  E-value=1.4e-15  Score=142.79  Aligned_cols=122  Identities=23%  Similarity=0.394  Sum_probs=103.8

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +|+..+.||+|+||.||+|+.. +|+.||||.++.... ......+.+|++++++++||||+++++++.+.+..++||||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence            4677889999999999999974 689999999864332 22345789999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++ ++|.++++....     ..+++.++..++.|+++||+|||+.   +|+||
T Consensus        81 ~~-~~l~~~~~~~~~-----~~l~~~~~~~~~~~i~~~l~~lh~~---~i~H~  124 (284)
T cd07860          81 LH-QDLKKFMDASPL-----SGIPLPLIKSYLFQLLQGLAFCHSH---RVLHR  124 (284)
T ss_pred             cc-cCHHHHHHhCCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            96 689998875431     2578888999999999999999988   99997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=4.4e-16  Score=152.81  Aligned_cols=122  Identities=16%  Similarity=0.231  Sum_probs=108.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      +-|...+.||+|+-|.|..|+. .+|+.+|||.+....  .........+|+.+|+-+.|||+++++.++.+..+.|+|.
T Consensus        12 GpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvl   91 (786)
T KOG0588|consen   12 GPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVL   91 (786)
T ss_pred             cceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEE
Confidence            3456678899999999999995 689999999995442  1222446889999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|.|++++.+++       .+.+.++..+++||+.|+.|.|+.   +|+||
T Consensus        92 Eyv~gGELFdylv~kG-------~l~e~eaa~ff~QIi~gv~yCH~~---~icHR  136 (786)
T KOG0588|consen   92 EYVPGGELFDYLVRKG-------PLPEREAAHFFRQILDGVSYCHAF---NICHR  136 (786)
T ss_pred             EecCCchhHHHHHhhC-------CCCCHHHHHHHHHHHHHHHHHhhh---cceec
Confidence            9999999999999886       689999999999999999999999   99998

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.64  E-value=1.9e-15  Score=140.40  Aligned_cols=125  Identities=18%  Similarity=0.319  Sum_probs=107.6

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ++|+..+.||+|+||+||+|.. .++..+|+|++.........+.+.+|++.++.++|+|++++++.+...+..++|+||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   80 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPY   80 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEec
Confidence            3677789999999999999996 468899999986443333456899999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++++|.++++....    ...+++..+..++.|++.|++|||+.   +|+||
T Consensus        81 ~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~ql~~al~~lh~~---~i~h~  126 (267)
T cd06610          81 LSGGSLLDIMKSSYP----RGGLDEAIIATVLKEVLKGLEYLHSN---GQIHR  126 (267)
T ss_pred             cCCCcHHHHHHHhcc----cCCCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            999999999976421    12578888999999999999999998   99997

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.64  E-value=1.4e-15  Score=144.56  Aligned_cols=122  Identities=24%  Similarity=0.434  Sum_probs=100.8

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCC----EEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~----~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      ++|...+.||+|+||.||+|.. .+|.    .||+|.+..........++.+|+.+++.++||||++++|+|... ..++
T Consensus         7 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~~   85 (303)
T cd05110           7 TELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQL   85 (303)
T ss_pred             hhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-Ccee
Confidence            4566778999999999999986 3444    57999886443333345789999999999999999999999764 4679


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||+++|+|.+++.....      .+++..+..++.|++.||+|||+.   +|+||
T Consensus        86 v~e~~~~g~l~~~~~~~~~------~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~  133 (303)
T cd05110          86 VTQLMPHGCLLDYVHEHKD------NIGSQLLLNWCVQIAKGMMYLEER---RLVHR  133 (303)
T ss_pred             eehhcCCCCHHHHHHhccc------CCCHHHHHHHHHHHHHHHHHHhhc---Ceecc
Confidence            9999999999999876432      477888899999999999999998   99997

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.64  E-value=1.4e-15  Score=140.49  Aligned_cols=123  Identities=15%  Similarity=0.223  Sum_probs=105.0

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +|+..+.||+|+||.||++... +|..+|+|.+..... ....+.+.+|+.+++.++|+|++++++++...+..++|+||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   80 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEY   80 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEec
Confidence            3566789999999999999975 688999999854321 22345788999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++++|.+++.+...     ..+++..+..++.|+++||.|||+.   +|+||
T Consensus        81 ~~~~~L~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~lh~~---~i~H~  125 (257)
T cd08225          81 CDGGDLMKRINRQRG-----VLFSEDQILSWFVQISLGLKHIHDR---KILHR  125 (257)
T ss_pred             CCCCcHHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            999999999976432     1468888999999999999999998   89996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.64  E-value=1.2e-15  Score=143.33  Aligned_cols=120  Identities=18%  Similarity=0.302  Sum_probs=102.4

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCC
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMV  368 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~  368 (419)
                      |+..+.||+|+||.||+|... ++..+|+|.+.... ....+.|.+|+++++.++|||++++++++...+..++|+||++
T Consensus         7 ~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~   85 (282)
T cd06643           7 WEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKS-EEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCA   85 (282)
T ss_pred             HHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCC-HHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecC
Confidence            344578999999999999975 57889999985332 2234578999999999999999999999999999999999999


Q ss_pred             CCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          369 NGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       369 ~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|+|..++.+...      .+++..+..++.|+++||.|||+.   +|+||
T Consensus        86 ~~~l~~~~~~~~~------~l~~~~~~~~~~qi~~~L~~LH~~---~i~H~  127 (282)
T cd06643          86 GGAVDAVMLELER------PLTEPQIRVVCKQTLEALNYLHEN---KIIHR  127 (282)
T ss_pred             CCcHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            9999998875321      578889999999999999999998   99997

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.63  E-value=1.3e-15  Score=140.76  Aligned_cols=117  Identities=25%  Similarity=0.363  Sum_probs=100.1

Q ss_pred             CeeCcCCceEEEEEEeCC--C--CEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRLTD--G--SLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~~--g--~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      +.||+|+||.||+|.+.+  +  ..||||.++........+.|.+|+.++++++|+||+++++++.. ...++|+||+++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAPL   79 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecCC
Confidence            468999999999999742  3  36999999654433445689999999999999999999999988 888999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|.+++.....     ..+++.....++.|++.||+|||+.   +|+||
T Consensus        80 ~~L~~~l~~~~~-----~~~~~~~~~~~~~qi~~~L~~lH~~---~i~H~  121 (257)
T cd05040          80 GSLLDRLRKDAL-----GHFLISTLCDYAVQIANGMRYLESK---RFIHR  121 (257)
T ss_pred             CcHHHHHHhccc-----ccCcHHHHHHHHHHHHHHHHHHHhC---Ccccc
Confidence            999999986531     2578889999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.63  E-value=1.8e-15  Score=139.66  Aligned_cols=121  Identities=26%  Similarity=0.410  Sum_probs=104.6

Q ss_pred             CCCCeeCcCCceEEEEEEeCC-----CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          291 SNRNILGRGGFGKVYKGRLTD-----GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       291 ~~~~~lG~G~fg~Vy~~~~~~-----g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      +..+.||+|+||.||++...+     +..||+|.++........+.+.+|++.+..++|+|++++++++.+.+..+++||
T Consensus         2 ~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e   81 (258)
T smart00219        2 TLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVME   81 (258)
T ss_pred             cccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEe
Confidence            456889999999999999753     378999999655433356689999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.++++.....     .+++.++..++.|++.|++|||+.   +|+||
T Consensus        82 ~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~ql~~~l~~lh~~---~~~h~  127 (258)
T smart00219       82 YMEGGDLLDYLRKNRPK-----ELSLSDLLSFALQIARGMEYLESK---NFIHR  127 (258)
T ss_pred             ccCCCCHHHHHHhhhhc-----cCCHHHHHHHHHHHHHHHHHHhcC---Ceeec
Confidence            99999999999865421     278899999999999999999999   99997

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.63  E-value=1.7e-15  Score=143.18  Aligned_cols=120  Identities=18%  Similarity=0.275  Sum_probs=104.6

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +.|...+.||+|+||.||++.. .++..||+|.+... .....+.+.+|+.++++++|||++++++++...+..++|+||
T Consensus        19 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~-~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~   97 (293)
T cd06647          19 KKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQ-QQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEY   97 (293)
T ss_pred             hhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccc-cchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEec
Confidence            5677788999999999999985 46889999998533 222346789999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.+++...        .+++.++..++.|++.|+.|||+.   +|+||
T Consensus        98 ~~~~~L~~~~~~~--------~l~~~~~~~i~~~l~~al~~LH~~---gi~H~  139 (293)
T cd06647          98 LAGGSLTDVVTET--------CMDEGQIAAVCRECLQALEFLHSN---QVIHR  139 (293)
T ss_pred             CCCCcHHHHHhhc--------CCCHHHHHHHHHHHHHHHHHHHhC---CEeec
Confidence            9999999998754        367778889999999999999999   99997

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.63  E-value=1.7e-15  Score=145.84  Aligned_cols=114  Identities=19%  Similarity=0.216  Sum_probs=95.4

Q ss_pred             eCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcC---CCCCCcceeEEEecCCceeEEeccCCC
Q 014778          296 LGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMA---VHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       296 lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      ||+|+||+||+|+.. +++.||||++.....  ......+..|..++...   +||||+++++++...+..++||||+++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            699999999999964 689999999853221  11223456677777665   799999999999999999999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|.+++....       .+++..+..++.||++||+|||+.   +|+||
T Consensus        81 g~L~~~l~~~~-------~~~~~~~~~~~~qil~al~~LH~~---~ivHr  120 (330)
T cd05586          81 GELFWHLQKEG-------RFSEDRAKFYIAELVLALEHLHKY---DIVYR  120 (330)
T ss_pred             ChHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEec
Confidence            99999987654       578888999999999999999999   99998

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.63  E-value=8.9e-18  Score=138.99  Aligned_cols=133  Identities=26%  Similarity=0.442  Sum_probs=123.1

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ...+|.|.||+|.++ .+|+.+..|.+|+.|++++|+++ .+|..++++++|+.|+++-|++. .+|..||.++.|++||
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            356899999999998 67899999999999999999999 89999999999999999999998 8999999999999999


Q ss_pred             cccCcCcc-cCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCCC
Q 014778          148 LNNNSLMG-EIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       148 l~~N~l~g-~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~  203 (419)
                      |++|+++. .+|..|..++.|+.|++++|.|.-.+|+.+.+++++.+.+..|.+...
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~l  165 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSL  165 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhC
Confidence            99999975 789999999999999999999998888999999999998888877643

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.63  E-value=3.1e-15  Score=139.20  Aligned_cols=121  Identities=16%  Similarity=0.318  Sum_probs=101.6

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc----ccCHHHHHHHHHHHhcCCCCCCcceeEEEecC--Ccee
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT----QGGELQFQTEVEMISMAVHRNLLRLRGFCMTP--TERL  361 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~----~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~  361 (419)
                      +|...+.||+|+||.||++.. .++..||+|++.....    ....+.+.+|+.++++++||||+++++++...  ...+
T Consensus         3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (266)
T cd06651           3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLT   82 (266)
T ss_pred             CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEE
Confidence            678889999999999999996 4689999999853221    11234688999999999999999999988763  5678


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++||+++++|.+++....       .+++.....++.|++.||+|||+.   +|+||
T Consensus        83 l~~e~~~~~~L~~~l~~~~-------~l~~~~~~~~~~qi~~~l~~LH~~---~i~H~  130 (266)
T cd06651          83 IFMEYMPGGSVKDQLKAYG-------ALTESVTRKYTRQILEGMSYLHSN---MIVHR  130 (266)
T ss_pred             EEEeCCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeeeC
Confidence            9999999999999997643       467788889999999999999988   99997

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.63  E-value=2e-15  Score=139.52  Aligned_cols=122  Identities=15%  Similarity=0.220  Sum_probs=104.2

Q ss_pred             CCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          290 FSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      |+..+.||+|+||.+|++.. .+|+.||+|++.... .....+++.+|+.++++++|+|++++.+++.+.+..++|+||+
T Consensus         2 y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd08218           2 YVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDYC   81 (256)
T ss_pred             ceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEecC
Confidence            66678999999999999996 468999999985332 2223457999999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|.++++....     ..+++.+...++.|++.|+.|||+.   +|+|+
T Consensus        82 ~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~  125 (256)
T cd08218          82 EGGDLYKKINAQRG-----VLFPEDQILDWFVQICLALKHVHDR---KILHR  125 (256)
T ss_pred             CCCcHHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CEecC
Confidence            99999999875431     1467788889999999999999998   89996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.63  E-value=1.4e-15  Score=143.58  Aligned_cols=128  Identities=21%  Similarity=0.354  Sum_probs=104.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCcee
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  361 (419)
                      .+|...+.||+|+||.||+|+..      ++..+|+|.++... ....+.|.+|++.+++++|+||+++++++...+..+
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   83 (291)
T cd05094           5 RDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPT-LAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLI   83 (291)
T ss_pred             HHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCcc-HHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceE
Confidence            34666789999999999999842      34579999985432 223457999999999999999999999999999999


Q ss_pred             EEeccCCCCChhhhhcCCccc---------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIV---------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~---------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++|+|.++++.....         ......+++..++.++.||+.|++|||++   +|+||
T Consensus        84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~---~i~H~  147 (291)
T cd05094          84 MVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQ---HFVHR  147 (291)
T ss_pred             EEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhC---Ceeec
Confidence            999999999999999754310         01112478899999999999999999999   99997

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.63  E-value=2.1e-15  Score=139.24  Aligned_cols=123  Identities=21%  Similarity=0.379  Sum_probs=105.1

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +|...+.||+|+||.||++.. .+++.+|||.+.... .......+.+|++++++++|||++++++.+...+..++|+||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEY   80 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEec
Confidence            366678999999999999996 468899999985432 222356799999999999999999999999988999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.++++....     ..+++..+..++.|++.|++|||+.   +|+||
T Consensus        81 ~~~~~L~~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lh~~---~i~h~  125 (256)
T cd08220          81 APGGTLAEYIQKRCN-----SLLDEDTILHFFVQILLALHHVHTK---LILHR  125 (256)
T ss_pred             CCCCCHHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            999999999976431     1478888999999999999999998   99997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.63  E-value=9.7e-17  Score=150.63  Aligned_cols=121  Identities=19%  Similarity=0.319  Sum_probs=107.1

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      .|+..+.||+|.||.||||.. .+++.||+|.+.-+......++..+|+.++++++++||.+++|.+......|++||||
T Consensus        14 ~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~   93 (467)
T KOG0201|consen   14 LYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYC   93 (467)
T ss_pred             ccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHh
Confidence            466668999999999999996 5789999999976666666778999999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .+|++.+.|+...       .+.+....-+.+++..|+.|||.+   +.|||
T Consensus        94 ~gGsv~~lL~~~~-------~~~E~~i~~ilre~l~~l~ylH~~---~kiHr  135 (467)
T KOG0201|consen   94 GGGSVLDLLKSGN-------ILDEFEIAVILREVLKGLDYLHSE---KKIHR  135 (467)
T ss_pred             cCcchhhhhccCC-------CCccceeeeehHHHHHHhhhhhhc---ceecc
Confidence            9999999998765       235555666899999999999999   99998

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.63  E-value=1e-15  Score=144.50  Aligned_cols=134  Identities=23%  Similarity=0.358  Sum_probs=110.3

Q ss_pred             ccHHHHHHHhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEe
Q 014778          278 FSLRELQVATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCM  355 (419)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~  355 (419)
                      ++++++..++++|...+.||+|+||.||++.. .+++.+|+|.+....  .....+.+|+.++.++ +|||++++++++.
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~--~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~   89 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS--DVDEEIEAEYNILQSLPNHPNVVKFYGMFY   89 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc--cHHHHHHHHHHHHHHhcCCCCeEEEEEEEE
Confidence            45566677788999999999999999999996 468899999985321  2245678899999998 8999999999987


Q ss_pred             cCC-----ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          356 TPT-----ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       356 ~~~-----~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..+     ..++|+||+++|+|.++++....   ....+++..+..++.|++.||+|||+.   +|+||
T Consensus        90 ~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~---~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~  152 (291)
T cd06639          90 KADKLVGGQLWLVLELCNGGSVTELVKGLLI---CGQRLDEAMISYILYGALLGLQHLHNN---RIIHR  152 (291)
T ss_pred             eccccCCCeeEEEEEECCCCcHHHHHHHhhh---cCCCCCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            643     47999999999999998874321   112578888999999999999999998   99997

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.63  E-value=6.5e-16  Score=152.49  Aligned_cols=124  Identities=22%  Similarity=0.326  Sum_probs=105.9

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCce
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~  360 (419)
                      ...++|....+||+|.||+|+.+.++ +++.+|||.++.+.  ..++.+..+.|.+++.-. +||.++++++++.+.+..
T Consensus       365 ~~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l  444 (694)
T KOG0694|consen  365 LTLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHL  444 (694)
T ss_pred             ccccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeE
Confidence            34568889999999999999999985 68899999997543  233455678888877765 599999999999999999


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +.||||+.+|++..+.+..        .+++..+.-+|..|+.||.|||++   +||+|
T Consensus       445 ~fvmey~~Ggdm~~~~~~~--------~F~e~rarfyaAev~l~L~fLH~~---~IIYR  492 (694)
T KOG0694|consen  445 FFVMEYVAGGDLMHHIHTD--------VFSEPRARFYAAEVVLGLQFLHEN---GIIYR  492 (694)
T ss_pred             EEEEEecCCCcEEEEEecc--------cccHHHHHHHHHHHHHHHHHHHhc---Cceee
Confidence            9999999999966555543        699999999999999999999999   99998

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.63  E-value=2.4e-15  Score=143.73  Aligned_cols=123  Identities=22%  Similarity=0.264  Sum_probs=105.8

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc--cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      +|...+.||+|+||.||++... +++.||+|.+......  ...+.+.+|++++..++|+||+++++++...+..++|||
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   81 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMD   81 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEE
Confidence            5777789999999999999975 5899999999643322  234578999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++.....     ..+++..+..++.|+++||+|||+.   +|+||
T Consensus        82 ~~~~~~L~~~~~~~~~-----~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~  127 (316)
T cd05574          82 YCPGGELFRLLQRQPG-----KCLSEEVARFYAAEVLLALEYLHLL---GIVYR  127 (316)
T ss_pred             ecCCCCHHHHHHhCCC-----CccCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            9999999999875431     1578888889999999999999998   99997

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.63  E-value=1.4e-15  Score=141.22  Aligned_cols=122  Identities=16%  Similarity=0.216  Sum_probs=106.0

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      +|+..+.||+|+||.||++... +++.+|+|++.........+++.+|++.+++++||||+++++++...+..++++||+
T Consensus         2 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~   81 (265)
T cd06605           2 DLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYM   81 (265)
T ss_pred             cchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEec
Confidence            4666788999999999999975 689999999865433344567999999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhh-ccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKY-SCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~-~~~p~IiHR  419 (419)
                      ++++|.+++....      ..+++.....++.|++.|++|||+ .   +|+||
T Consensus        82 ~~~~L~~~~~~~~------~~~~~~~~~~~~~~l~~~l~~lH~~~---~i~H~  125 (265)
T cd06605          82 DGGSLDKILKEVQ------GRIPERILGKIAVAVLKGLTYLHEKH---KIIHR  125 (265)
T ss_pred             CCCcHHHHHHHcc------CCCCHHHHHHHHHHHHHHHHHHcCCC---CeecC
Confidence            9999999998653      157778888999999999999998 7   89997

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.63  E-value=3.8e-15  Score=140.39  Aligned_cols=122  Identities=23%  Similarity=0.347  Sum_probs=96.9

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-C-CCCEEEEEEccccccc-cCHHHHHHHHHHHhcC---CCCCCcceeEEEec-----C
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-T-DGSLVAVKRLKEERTQ-GGELQFQTEVEMISMA---VHRNLLRLRGFCMT-----P  357 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~-~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~-----~  357 (419)
                      +|...+.||+|+||.||+|.. . +|+.||||.++..... .....+.+|+.++..+   +||||++++++|..     .
T Consensus         2 ~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~   81 (290)
T cd07862           2 QYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRE   81 (290)
T ss_pred             CcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCC
Confidence            577778999999999999986 3 4688999998643322 2234677787777655   79999999999863     3


Q ss_pred             CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ...++|+||++ |+|.+++.....     ..+++.++..++.||+.||+|||+.   +|+||
T Consensus        82 ~~~~lv~e~~~-~~l~~~~~~~~~-----~~~~~~~~~~i~~qi~~aL~~lH~~---~iiH~  134 (290)
T cd07862          82 TKLTLVFEHVD-QDLTTYLDKVPE-----PGVPTETIKDMMFQLLRGLDFLHSH---RVVHR  134 (290)
T ss_pred             CcEEEEEccCC-CCHHHHHHhCCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeC
Confidence            45789999997 699999875431     1477888999999999999999998   99997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.63  E-value=2.7e-15  Score=140.90  Aligned_cols=120  Identities=18%  Similarity=0.264  Sum_probs=104.3

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      |...+.||+|+||.||+|... +|+.||||++..... ......+.+|+.++++++|+|++++++++......++|+||+
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   81 (286)
T cd07832           2 YKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEYM   81 (286)
T ss_pred             ceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEeccc
Confidence            566788999999999999964 689999999864332 223567999999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                       +++|.++++...      ..+++.++..++.||++||+|||+.   +|+||
T Consensus        82 -~~~L~~~~~~~~------~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  123 (286)
T cd07832          82 -PSDLSEVLRDEE------RPLPEAQVKSYMRMLLKGVAYMHAN---GIMHR  123 (286)
T ss_pred             -CCCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence             999999987543      1588889999999999999999998   99997

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.63  E-value=3.1e-16  Score=130.72  Aligned_cols=120  Identities=20%  Similarity=0.342  Sum_probs=101.8

Q ss_pred             CCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          290 FSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      |...+.||+|.||+|+||+- .+++.||+|+++-+.. .+-.....+|+.+++.++|.|||+++.....+...-+|+|||
T Consensus         4 ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~c   83 (292)
T KOG0662|consen    4 YDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFC   83 (292)
T ss_pred             hHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHHh
Confidence            44457899999999999994 5789999999964432 333557899999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .. +|.++...-.+      .++...+..++.|+++|+.|.|++   ++.||
T Consensus        84 dq-dlkkyfdslng------~~d~~~~rsfmlqllrgl~fchsh---nvlhr  125 (292)
T KOG0662|consen   84 DQ-DLKKYFDSLNG------DLDPEIVRSFMLQLLRGLGFCHSH---NVLHR  125 (292)
T ss_pred             hH-HHHHHHHhcCC------cCCHHHHHHHHHHHHhhhhhhhhh---hhhhc
Confidence            87 88888876543      466777888999999999999999   88887

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.62  E-value=3.5e-15  Score=137.98  Aligned_cols=120  Identities=23%  Similarity=0.367  Sum_probs=102.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEec-CCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT-PTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~~~lv~e~  366 (419)
                      ++|...+.||+|+||.||++..+ |..||+|.++..   ...+.|.+|+.++++++|+|++++++++.. .+..++|+||
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~-~~~~~~k~~~~~---~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~   81 (256)
T cd05082           6 KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND---ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY   81 (256)
T ss_pred             HhCeeeeeecccCCCeEEEEEEc-CCcEEEEEeCCC---chHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEEC
Confidence            46777899999999999999875 778999998543   234579999999999999999999998654 4568999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.++++....     ..+++..+..++.|++.|++|||+.   +|+||
T Consensus        82 ~~~~~L~~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  126 (256)
T cd05082          82 MAKGSLVDYLRSRGR-----SVLGGDCLLKFSLDVCEAMEYLEAN---NFVHR  126 (256)
T ss_pred             CCCCcHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CEecc
Confidence            999999999976432     1477888899999999999999998   99997

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.62  E-value=1.9e-16  Score=153.14  Aligned_cols=121  Identities=21%  Similarity=0.275  Sum_probs=102.0

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccccc--CHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQG--GELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~--~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      -|+..+.||.|+||.||-++. .+...||||++.-.....  ...+...|+..|.+++|||+|.+.|||..+...|||||
T Consensus        27 lf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVME  106 (948)
T KOG0577|consen   27 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVME  106 (948)
T ss_pred             HHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHH
Confidence            466668899999999999995 578899999996433222  24578999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||-+ |-.+.+.-...      .+.+.++..|+.+.++||+|||+.   +.|||
T Consensus       107 YClG-SAsDlleVhkK------plqEvEIAAi~~gaL~gLaYLHS~---~~IHR  150 (948)
T KOG0577|consen  107 YCLG-SASDLLEVHKK------PLQEVEIAAITHGALQGLAYLHSH---NRIHR  150 (948)
T ss_pred             HHhc-cHHHHHHHHhc------cchHHHHHHHHHHHHHHHHHHHHh---hHHhh
Confidence            9974 77777653321      577888999999999999999999   89998

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.62  E-value=2.4e-15  Score=142.51  Aligned_cols=120  Identities=16%  Similarity=0.277  Sum_probs=105.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ..|+..+.||.|+||.||+|.. .+++.||+|.+... .....+.+.+|++.++.++|+|++++++++...+..++|+||
T Consensus        19 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   97 (296)
T cd06655          19 KKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQ-KQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEY   97 (296)
T ss_pred             ceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecc-cCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEe
Confidence            3577778999999999999985 57899999998543 223356789999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.+++...        .+++.++..++.|++.|++|||+.   +|+||
T Consensus        98 ~~~~~L~~~~~~~--------~l~~~~~~~i~~~l~~al~~LH~~---~i~H~  139 (296)
T cd06655          98 LAGGSLTDVVTET--------CMDEAQIAAVCRECLQALEFLHAN---QVIHR  139 (296)
T ss_pred             cCCCcHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            9999999988653        478889999999999999999999   99997

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.62  E-value=2.8e-15  Score=140.72  Aligned_cols=128  Identities=25%  Similarity=0.412  Sum_probs=105.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCcee
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  361 (419)
                      .++...+.||+|+||.||++...      ++..+|+|.+... .......|.+|+++++.++|+||+++++++...+..+
T Consensus         5 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   83 (280)
T cd05092           5 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA-SESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLL   83 (280)
T ss_pred             HhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcC-CHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceE
Confidence            35666789999999999999742      3568999998543 2233567999999999999999999999999999999


Q ss_pred             EEeccCCCCChhhhhcCCccc--------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIV--------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~--------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++||+++|+|.++++.....        ......+++..+..++.|++.|++|||+.   +|+||
T Consensus        84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~---~i~H~  146 (280)
T cd05092          84 MVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASL---HFVHR  146 (280)
T ss_pred             EEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            999999999999999864310        11123578889999999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.62  E-value=3.1e-15  Score=138.83  Aligned_cols=114  Identities=17%  Similarity=0.293  Sum_probs=99.7

Q ss_pred             eCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCCh
Q 014778          296 LGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSV  372 (419)
Q Consensus       296 lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~GsL  372 (419)
                      ||+|+||.||+++.. +++.||+|.+.....  ....+.+.+|+.+++.++||||+++++++.++...++|+||+++|+|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            699999999999975 588999999854322  22346799999999999999999999999999999999999999999


Q ss_pred             hhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          373 ASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       373 ~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .+++++..       .+++..+..++.|+++||+|||+.   +++||
T Consensus        81 ~~~l~~~~-------~l~~~~~~~~~~~i~~~l~~lH~~---~~~h~  117 (262)
T cd05572          81 WTILRDRG-------LFDEYTARFYIACVVLAFEYLHNR---GIIYR  117 (262)
T ss_pred             HHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHhhC---CcccC
Confidence            99998754       477888889999999999999998   99996

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.62  E-value=3.3e-15  Score=138.90  Aligned_cols=122  Identities=19%  Similarity=0.327  Sum_probs=101.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc----cccCHHHHHHHHHHHhcCCCCCCcceeEEEecC--Cce
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER----TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP--TER  360 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~  360 (419)
                      .+|...+.||+|+||.||+|.. .+++.||+|.+....    .......|.+|++++++++|+||+++++++.+.  ...
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            3677889999999999999996 468999999874221    122245788999999999999999999998764  357


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++++||+++++|.+++....       .+++.....++.|++.|++|||+.   +|+||
T Consensus        82 ~~v~e~~~~~~L~~~~~~~~-------~l~~~~~~~~~~~i~~al~~LH~~---~i~H~  130 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAYG-------ALTENVTRRYTRQILQGVSYLHSN---MIVHR  130 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CEecC
Confidence            89999999999999987543       467778889999999999999998   99997

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.62  E-value=1.8e-15  Score=142.88  Aligned_cols=122  Identities=18%  Similarity=0.312  Sum_probs=105.0

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +.|...+.||+|+||.||+|... +++.||+|.+... .....+.+.+|+.+++.++|+|++++++++..++..++||||
T Consensus        12 ~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   90 (292)
T cd06644          12 EVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETK-SEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEF   90 (292)
T ss_pred             hhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccC-CHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEec
Confidence            45777789999999999999974 5889999998543 222356789999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|..++.....      .+++..+..++.|++.|++|||+.   +|+||
T Consensus        91 ~~~~~l~~~~~~~~~------~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~  134 (292)
T cd06644          91 CPGGAVDAIMLELDR------GLTEPQIQVICRQMLEALQYLHSM---KIIHR  134 (292)
T ss_pred             CCCCcHHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHhcC---Ceeec
Confidence            999999988765321      478889999999999999999998   99997

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.62  E-value=3.1e-15  Score=138.57  Aligned_cols=123  Identities=21%  Similarity=0.269  Sum_probs=106.6

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .++|...+.+|+|+||.||++... +++.+|+|.+..... ...+.+.+|++++++++|||++++++++...+..+++||
T Consensus         2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~-~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e   80 (262)
T cd06613           2 QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPG-DDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVME   80 (262)
T ss_pred             ccceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCch-hhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEe
Confidence            356777899999999999999964 678999999854322 245689999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++++|.+++.....      .+++.++..++.|++.|++|||+.   +|+||
T Consensus        81 ~~~~~~l~~~~~~~~~------~l~~~~~~~~~~ql~~~l~~lh~~---~i~h~  125 (262)
T cd06613          81 YCGGGSLQDIYQVTRG------PLSELQIAYVCRETLKGLAYLHET---GKIHR  125 (262)
T ss_pred             CCCCCcHHHHHHhhcc------CCCHHHHHHHHHHHHHHHHHHHhC---Cceec
Confidence            9999999999876521      577888999999999999999998   89996

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.62  E-value=3.5e-15  Score=141.41  Aligned_cols=124  Identities=24%  Similarity=0.446  Sum_probs=103.7

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC-----
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT-----  358 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----  358 (419)
                      ..++|+..+.||+|+||.||+|... +|+.||+|.++.... ......+.+|++++++++|||++++++++.+..     
T Consensus         5 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~~   84 (302)
T cd07864           5 CVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALDF   84 (302)
T ss_pred             hhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhhc
Confidence            4567888899999999999999975 688999999964322 223456889999999999999999999987755     


Q ss_pred             -----ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 -----ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 -----~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                           ..++|+||+++ ++.+.+....      ..+++.++..++.||+.||+|||+.   +|+||
T Consensus        85 ~~~~~~~~lv~e~~~~-~l~~~l~~~~------~~~~~~~~~~i~~qi~~aL~~LH~~---~i~H~  140 (302)
T cd07864          85 KKDKGAFYLVFEYMDH-DLMGLLESGL------VHFSEDHIKSFMKQLLEGLNYCHKK---NFLHR  140 (302)
T ss_pred             cccCCcEEEEEcccCc-cHHHHHhcCC------CCCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence                 68999999986 7777776542      1578889999999999999999999   99997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.62  E-value=1.5e-15  Score=143.56  Aligned_cols=115  Identities=17%  Similarity=0.211  Sum_probs=100.0

Q ss_pred             CCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCC
Q 014778          293 RNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGS  371 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~Gs  371 (419)
                      ...||+|+||.||++.. .++..||||.+.... ....+.+.+|+..++.++|+|++++++++...+..++||||+++++
T Consensus        27 ~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~  105 (292)
T cd06658          27 FIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRK-QQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGA  105 (292)
T ss_pred             hhcccCCCCeEEEEEEECCCCCEEEEEEEecch-HHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCCc
Confidence            36799999999999996 468899999985332 2234578999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          372 VASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       372 L~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |.+++...        .+++.++..++.||+.||+|||+.   +|+||
T Consensus       106 L~~~~~~~--------~l~~~~~~~~~~qi~~~l~~LH~~---~ivH~  142 (292)
T cd06658         106 LTDIVTHT--------RMNEEQIATVCLSVLRALSYLHNQ---GVIHR  142 (292)
T ss_pred             HHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CEeec
Confidence            99988643        467788899999999999999999   99997

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.62  E-value=3.4e-15  Score=140.78  Aligned_cols=121  Identities=21%  Similarity=0.258  Sum_probs=102.4

Q ss_pred             CCCCCCeeCcCCceEEEEEEe----CCCCEEEEEEcccccc---ccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCce
Q 014778          289 NFSNRNILGRGGFGKVYKGRL----TDGSLVAVKRLKEERT---QGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~~---~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~  360 (419)
                      +|+..+.||+|+||.||++..    .+|..||+|+++....   ....+.+.+|+.++.++ +|+||+++.+++..+...
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            356678999999999999985    3688999999864321   12245688999999999 599999999999988889


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+||+++|+|.+++....       .+++.++..++.|++.||+|||+.   +|+||
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~-------~l~~~~~~~~~~qi~~al~~lH~~---~i~H~  129 (290)
T cd05613          81 HLILDYINGGELFTHLSQRE-------RFKEQEVQIYSGEIVLALEHLHKL---GIIYR  129 (290)
T ss_pred             EEEEecCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            99999999999999997653       467778888999999999999998   99997

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.62  E-value=1.2e-15  Score=154.46  Aligned_cols=128  Identities=15%  Similarity=0.142  Sum_probs=104.4

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC-----
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT-----  358 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----  358 (419)
                      ..+.|...+.||+|+||+||++.. .+|+.||||+++... .......+.+|+..+..++|+|++++...+...+     
T Consensus        30 ~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~~~  109 (496)
T PTZ00283         30 QAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRNPE  109 (496)
T ss_pred             cCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccCcc
Confidence            446788889999999999999985 579999999985432 2223456889999999999999999887765432     


Q ss_pred             ---ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 ---ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 ---~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                         ..++||||+++|+|.++++....   ....+++..+..++.|++.||+|||+.   +|+||
T Consensus       110 ~~~~i~lV~Ey~~~gsL~~~l~~~~~---~~~~l~e~~~~~i~~qll~aL~~lH~~---~IiHr  167 (496)
T PTZ00283        110 NVLMIALVLDYANAGDLRQEIKSRAK---TNRTFREHEAGLLFIQVLLAVHHVHSK---HMIHR  167 (496)
T ss_pred             cceEEEEEEeCCCCCcHHHHHHHhhc---cCCCCCHHHHHHHHHHHHHHHHHHHhC---CEecC
Confidence               25799999999999999975431   122578888999999999999999998   99998

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.62  E-value=2.6e-15  Score=141.19  Aligned_cols=121  Identities=17%  Similarity=0.267  Sum_probs=103.2

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +|+..+.||+|+||.||+|... +++.||||+++.... ....+.+.+|++++++++|+||+++++++...+..++||||
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   81 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEY   81 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEec
Confidence            5677789999999999999975 688999999864322 22356799999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++++.+..+.....       .+++.++..++.||+.|++|||+.   +|+||
T Consensus        82 ~~~~~l~~~~~~~~-------~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~  124 (288)
T cd07833          82 VERTLLELLEASPG-------GLPPDAVRSYIWQLLQAIAYCHSH---NIIHR  124 (288)
T ss_pred             CCCCHHHHHHhcCC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            99877776655432       478888999999999999999998   99997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.62  E-value=2.1e-17  Score=144.04  Aligned_cols=122  Identities=19%  Similarity=0.287  Sum_probs=105.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      +.|+..++||+|.|+.||++.. ++|+.+|+|.+.... ...+.++..+|+++-..++|||||+|...+.+....++|+|
T Consensus        11 d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvFe   90 (355)
T KOG0033|consen   11 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFD   90 (355)
T ss_pred             hhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEEe
Confidence            4566668999999999999985 579999999885332 33356788999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|.+|+|..-+-.+.       .+++.++.-++.||+.++.|.|.+   +||||
T Consensus        91 ~m~G~dl~~eIV~R~-------~ySEa~aSH~~rQiLeal~yCH~n---~IvHR  134 (355)
T KOG0033|consen   91 LVTGGELFEDIVARE-------FYSEADASHCIQQILEALAYCHSN---GIVHR  134 (355)
T ss_pred             cccchHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhc---Cceec
Confidence            999999987665442       688888999999999999999999   99998

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.61  E-value=7.7e-16  Score=142.38  Aligned_cols=119  Identities=19%  Similarity=0.287  Sum_probs=101.2

Q ss_pred             CCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccC-HHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCC
Q 014778          291 SNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGG-ELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMV  368 (419)
Q Consensus       291 ~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~-~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~  368 (419)
                      ...+.||+|+||+||++... +++.||+|.+........ .....+|+..+.+++||||+++++++......++||||++
T Consensus         2 ~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~~   81 (260)
T PF00069_consen    2 RLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYCP   81 (260)
T ss_dssp             EEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEET
T ss_pred             EEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccccccccccccccccccccccccccccc
Confidence            34578999999999999975 567899999964432221 2234569999999999999999999999999999999999


Q ss_pred             CCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          369 NGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       369 ~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|+|.+++....       .+++.++..++.|+++||+|||+.   +|+||
T Consensus        82 ~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~L~~Lh~~---~i~H~  122 (260)
T PF00069_consen   82 GGSLQDYLQKNK-------PLSEEEILKIAYQILEALAYLHSK---GIVHR  122 (260)
T ss_dssp             TEBHHHHHHHHS-------SBBHHHHHHHHHHHHHHHHHHHHT---TEEES
T ss_pred             cccccccccccc-------cccccccccccccccccccccccc---ccccc
Confidence            999999998322       578889999999999999999999   99997

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.61  E-value=4.2e-15  Score=139.28  Aligned_cols=116  Identities=22%  Similarity=0.316  Sum_probs=99.2

Q ss_pred             eCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCCh
Q 014778          296 LGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSV  372 (419)
Q Consensus       296 lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~GsL  372 (419)
                      ||+|+||+||++... +|+.||+|.+....  .......+.+|+++++.++|||++++.+++...+..++|+||+++|+|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            689999999999864 68999999985322  122344678899999999999999999999999999999999999999


Q ss_pred             hhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          373 ASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       373 ~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .+++.....     ..+++.++..++.|++.|+.|||+.   +|+||
T Consensus        81 ~~~l~~~~~-----~~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~  119 (277)
T cd05577          81 KYHIYNVGE-----PGFPEARAIFYAAQIICGLEHLHQR---RIVYR  119 (277)
T ss_pred             HHHHHHcCc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            999976432     2578888999999999999999998   99997

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.61  E-value=1.6e-15  Score=156.63  Aligned_cols=135  Identities=20%  Similarity=0.318  Sum_probs=113.4

Q ss_pred             HHHHHhhCCCCCCeeCcCCceEEEEEEeC----C----CCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeE
Q 014778          282 ELQVATDNFSNRNILGRGGFGKVYKGRLT----D----GSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRG  352 (419)
Q Consensus       282 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~----~----g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g  352 (419)
                      .++...+++...+.+|+|.||.|++|...    .    ...||||.++........+.+..|+++|..+ +|+|++.++|
T Consensus       290 ~~e~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG  369 (609)
T KOG0200|consen  290 KWEIPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLG  369 (609)
T ss_pred             ceeechhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhhee
Confidence            34555666666679999999999999852    1    3579999998766666678899999999998 5999999999


Q ss_pred             EEecCCceeEEeccCCCCChhhhhcCCc---cccCCC------cchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          353 FCMTPTERLLVYPFMVNGSVASCLRGMF---IVSGFP------SFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       353 ~~~~~~~~~lv~e~~~~GsL~~~L~~~~---~~~~~~------~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|...+..++|.||++.|+|.++|+..+   ......      ..++..+.+.++.|||.||+||++.   ++|||
T Consensus       370 ~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~---~~vHR  442 (609)
T KOG0200|consen  370 ACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASV---PCVHR  442 (609)
T ss_pred             eeccCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhC---Cccch
Confidence            9999999999999999999999999876   111111      2488899999999999999999999   99998

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.61  E-value=5e-15  Score=144.12  Aligned_cols=117  Identities=12%  Similarity=0.156  Sum_probs=100.7

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ...+|...+.||+|+||.||+|... ++..||+|.....       ....|+.++++++|+||+++++++...+..++|+
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~-------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  136 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG-------TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVL  136 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc-------ccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEE
Confidence            4457999999999999999999975 5788999975321       2356999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+. |+|.+++.....      .+++.++..++.||+.||+|||+.   +||||
T Consensus       137 e~~~-~~l~~~l~~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivHr  181 (357)
T PHA03209        137 PHYS-SDLYTYLTKRSR------PLPIDQALIIEKQILEGLRYLHAQ---RIIHR  181 (357)
T ss_pred             EccC-CcHHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            9995 689998875431      578899999999999999999999   99998

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.61  E-value=2.1e-15  Score=141.63  Aligned_cols=120  Identities=18%  Similarity=0.304  Sum_probs=101.8

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      |...+.||+|+||.||+|... +|+.||+|+++.... ......+.+|++++++++|+|++++++++.+....++|+||+
T Consensus         2 y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   81 (284)
T cd07839           2 YEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYC   81 (284)
T ss_pred             ceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecC
Confidence            556688999999999999974 689999999864322 222356888999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      + |+|.+++.....      .+++..+..++.||++||.|||+.   +|+||
T Consensus        82 ~-~~l~~~~~~~~~------~~~~~~~~~~~~qi~~al~~LH~~---~i~H~  123 (284)
T cd07839          82 D-QDLKKYFDSCNG------DIDPEIVKSFMFQLLKGLAFCHSH---NVLHR  123 (284)
T ss_pred             C-CCHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---CEecC
Confidence            7 588888765321      578889999999999999999998   99997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.61  E-value=3.6e-15  Score=149.02  Aligned_cols=115  Identities=16%  Similarity=0.111  Sum_probs=100.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ..|...+.||+|+||.||++... +++.||||...       ...+.+|++++++++|+|||++++++...+..++||||
T Consensus       169 ~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~-------~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~  241 (461)
T PHA03211        169 LGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW-------YASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPK  241 (461)
T ss_pred             CCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc-------ccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            35778889999999999999975 57899999642       12467899999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +. |+|.+++.....      .+++.++..++.||++||+|||+.   +||||
T Consensus       242 ~~-~~L~~~l~~~~~------~l~~~~~~~i~~qi~~aL~yLH~~---gIvHr  284 (461)
T PHA03211        242 YR-SDLYTYLGARLR------PLGLAQVTAVARQLLSAIDYIHGE---GIIHR  284 (461)
T ss_pred             cC-CCHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---CEEEC
Confidence            95 799998865431      588999999999999999999999   99998

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.61  E-value=5.1e-15  Score=138.72  Aligned_cols=120  Identities=18%  Similarity=0.238  Sum_probs=99.5

Q ss_pred             CCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCC-CCCCcceeEEEecC--CceeEEec
Q 014778          290 FSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-HRNLLRLRGFCMTP--TERLLVYP  365 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~--~~~~lv~e  365 (419)
                      |...+.||+|+||.||+|.. .+++.||+|+++............+|+..+.++. |+|++++++++.+.  +..++|+|
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e   80 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFE   80 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEe
Confidence            34567899999999999996 4689999999864433223345568999999885 99999999999987  88999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |++ |+|.+++.....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus        81 ~~~-~~l~~~l~~~~~------~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~  124 (282)
T cd07831          81 LMD-MNLYELIKGRKR------PLPEKRVKSYMYQLLKSLDHMHRN---GIFHR  124 (282)
T ss_pred             cCC-ccHHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---Cceec
Confidence            997 588888875431      578899999999999999999998   99997

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.61  E-value=2.9e-15  Score=141.93  Aligned_cols=115  Identities=18%  Similarity=0.228  Sum_probs=100.4

Q ss_pred             CCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCC
Q 014778          293 RNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGS  371 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~Gs  371 (419)
                      ...||+|+||.||++... +++.||+|.+.... ....+.+.+|+..+..++|||++++++++...+..++|+||+++|+
T Consensus        26 ~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~-~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~  104 (297)
T cd06659          26 YIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRK-QQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGA  104 (297)
T ss_pred             hhhcCCCCceeEEEEEEcCCCCEEEEEEEEecc-cchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCCCC
Confidence            357999999999999964 68999999985432 2335678899999999999999999999999999999999999999


Q ss_pred             hhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          372 VASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       372 L~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |.+++...        .+++.++..++.|++.|++|||+.   +|+||
T Consensus       105 L~~~~~~~--------~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~  141 (297)
T cd06659         105 LTDIVSQT--------RLNEEQIATVCESVLQALCYLHSQ---GVIHR  141 (297)
T ss_pred             HHHHHhhc--------CCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            99987643        477888999999999999999999   99997

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.61  E-value=4.2e-15  Score=139.88  Aligned_cols=123  Identities=18%  Similarity=0.292  Sum_probs=108.0

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      .++.|...+.+|+|+||.||+|..+ +++.||+|.++....  ....+.+|++.++.++|+|++++++++...+..++|+
T Consensus        17 ~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   94 (286)
T cd06614          17 PRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ--NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVM   94 (286)
T ss_pred             ccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch--hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEE
Confidence            4566777789999999999999976 688999999964322  4567899999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++++|.+++....      ..+++.++..++.|++.||.|||+.   +|+|+
T Consensus        95 e~~~~~~L~~~l~~~~------~~l~~~~~~~i~~~i~~~L~~lH~~---gi~H~  140 (286)
T cd06614          95 EYMDGGSLTDIITQNF------VRMNEPQIAYVCREVLQGLEYLHSQ---NVIHR  140 (286)
T ss_pred             eccCCCcHHHHHHHhc------cCCCHHHHHHHHHHHHHHHHHHHhC---CeeeC
Confidence            9999999999998653      2578888999999999999999998   99996

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.61  E-value=4.3e-15  Score=140.31  Aligned_cols=122  Identities=20%  Similarity=0.324  Sum_probs=103.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc-cCHHHHHHHHHHHhcCCCCCCcceeEEEecC--CceeEE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTP--TERLLV  363 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv  363 (419)
                      ++|...+.||+|+||.||+|..+ +++.+|+|.++..... .....+.+|+.++.+++||||+++++++...  +..++|
T Consensus         5 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv   84 (293)
T cd07843           5 DEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMV   84 (293)
T ss_pred             hhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEE
Confidence            46777789999999999999975 6889999999643222 2234678899999999999999999999887  789999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||++ ++|.+++.....      .+++.++..++.||+.||+|||+.   +|+||
T Consensus        85 ~e~~~-~~L~~~~~~~~~------~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~  130 (293)
T cd07843          85 MEYVE-HDLKSLMETMKQ------PFLQSEVKCLMLQLLSGVAHLHDN---WILHR  130 (293)
T ss_pred             ehhcC-cCHHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            99998 499998876431      578889999999999999999998   99997

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.61  E-value=2.8e-15  Score=149.79  Aligned_cols=121  Identities=17%  Similarity=0.285  Sum_probs=96.4

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecC--------
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP--------  357 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--------  357 (419)
                      ...|...+.||+|+||.||+|.. .+++.||||++...     .....+|+.+|+.++|||||++.+++...        
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~-----~~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~  139 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQD-----PQYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKN  139 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecC-----cchHHHHHHHHHhcCCCCCcceeeeEeecccccCCCc
Confidence            45688889999999999999996 46889999988432     12345799999999999999999887442        


Q ss_pred             CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ...++||||+++ +|.+++....   .....+++..+..++.||+.||+|||+.   +|+||
T Consensus       140 ~~l~lvmE~~~~-~l~~~~~~~~---~~~~~l~~~~~~~~~~qi~~gL~yLH~~---~IiHr  194 (440)
T PTZ00036        140 IFLNVVMEFIPQ-TVHKYMKHYA---RNNHALPLFLVKLYSYQLCRALAYIHSK---FICHR  194 (440)
T ss_pred             eEEEEEEecCCc-cHHHHHHHHh---hcCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecC
Confidence            235689999985 7877765321   1112578888999999999999999999   99998

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.61  E-value=2.1e-15  Score=159.18  Aligned_cols=132  Identities=13%  Similarity=0.222  Sum_probs=105.9

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecC--Cce
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP--TER  360 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~  360 (419)
                      ...++|...+.||+|+||+||++... ++..||+|.+.... .......|..|+.++..++|||||++++++...  ...
T Consensus        10 ~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~l   89 (1021)
T PTZ00266         10 SRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQKL   89 (1021)
T ss_pred             cccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCEE
Confidence            34567888899999999999999964 67889999985332 222345789999999999999999999988553  458


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccc----cceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCV----SILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~----p~IiHR  419 (419)
                      ++||||+++|+|.++|......   ...+++..++.++.||+.||+|||+...    .+||||
T Consensus        90 yIVMEY~~gGSL~~lL~k~~~~---~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHR  149 (1021)
T PTZ00266         90 YILMEFCDAGDLSRNIQKCYKM---FGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHR  149 (1021)
T ss_pred             EEEEeCCCCCcHHHHHHHHhhc---cCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceec
Confidence            8999999999999999753211   1158888999999999999999997531    259997

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.61  E-value=6.4e-15  Score=139.20  Aligned_cols=123  Identities=16%  Similarity=0.309  Sum_probs=102.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      ++|...+.||+|.+|.||+|... +|+.||+|.++.... ....+.+.+|++++++++|+|++++++++...+..++|||
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence            45777889999999999999974 689999999854322 2234578899999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |++ ++|.+++.....     ..+++..+..++.||+.||+|||+.   +|+||
T Consensus        82 ~~~-~~l~~~~~~~~~-----~~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~  126 (294)
T PLN00009         82 YLD-LDLKKHMDSSPD-----FAKNPRLIKTYLYQILRGIAYCHSH---RVLHR  126 (294)
T ss_pred             ccc-ccHHHHHHhCCC-----CCcCHHHHHHHHHHHHHHHHHHHhC---CeeCC
Confidence            996 588888765431     1356777788999999999999998   99997

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.61  E-value=1.6e-16  Score=142.26  Aligned_cols=119  Identities=16%  Similarity=0.258  Sum_probs=104.9

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      -|+....+|+|+||.|||+..+ .|+.+|+|.+..+.   ..++...|+.+|.+++.+++|+++|.|......|+|||||
T Consensus        34 VFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~s---DLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYC  110 (502)
T KOG0574|consen   34 VFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPVDT---DLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYC  110 (502)
T ss_pred             HHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCccc---hHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhc
Confidence            3555578999999999999974 69999999995442   3568899999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..||+.+.++-++.      .+.+.+...+.++.++||+|||..   +-|||
T Consensus       111 GAGSiSDI~R~R~K------~L~E~EIs~iL~~TLKGL~YLH~~---~KIHR  153 (502)
T KOG0574|consen  111 GAGSISDIMRARRK------PLSEQEISAVLRDTLKGLQYLHDL---KKIHR  153 (502)
T ss_pred             CCCcHHHHHHHhcC------CccHHHHHHHHHHHHhHHHHHHHH---HHHHh
Confidence            99999999986542      688889999999999999999988   78887

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.60  E-value=3.3e-15  Score=138.38  Aligned_cols=114  Identities=18%  Similarity=0.282  Sum_probs=99.8

Q ss_pred             eCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCCh
Q 014778          296 LGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSV  372 (419)
Q Consensus       296 lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~GsL  372 (419)
                      ||+|+||.||+++.. +|+.+|+|.+.....  ....+.+.+|++++.+++|+|++++++.+......++++||+++|+|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            689999999999986 589999999854322  13355789999999999999999999999999999999999999999


Q ss_pred             hhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          373 ASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       373 ~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .+++++..       .+++..+..++.|+++||+|||+.   +|+||
T Consensus        81 ~~~l~~~~-------~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~  117 (265)
T cd05579          81 ASLLENVG-------SLDEDVARIYIAEIVLALEYLHSN---GIIHR  117 (265)
T ss_pred             HHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHc---CeecC
Confidence            99998643       578888999999999999999998   99997

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.60  E-value=4.5e-15  Score=139.29  Aligned_cols=132  Identities=22%  Similarity=0.347  Sum_probs=108.3

Q ss_pred             ccHHHHHHHhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEe
Q 014778          278 FSLRELQVATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCM  355 (419)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~  355 (419)
                      .++.++..+.+.|+..+.+|+|+||.||+|.. .+++.+|+|.+....  ....++..|+.++.++ +|+|++++++++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~--~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~   83 (282)
T cd06636           6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE--DEEEEIKLEINMLKKYSHHRNIATYYGAFI   83 (282)
T ss_pred             hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh--HHHHHHHHHHHHHHHhcCCCcEEEEeeehh
Confidence            35556666778888899999999999999997 468899999984322  2345788999999998 7999999999986


Q ss_pred             c------CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          356 T------PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       356 ~------~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .      .+..+++|||+++|+|.+++.....     ..+++..+..++.|+++|+.|||+.   +|+||
T Consensus        84 ~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~-----~~~~~~~~~~~~~qi~~al~~LH~~---~ivH~  145 (282)
T cd06636          84 KKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKG-----NALKEDWIAYICREILRGLAHLHAH---KVIHR  145 (282)
T ss_pred             cccccCCCCEEEEEEEeCCCCcHHHHHHHccC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            4      3567999999999999999875432     1466777888999999999999998   99997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.60  E-value=4.9e-15  Score=136.86  Aligned_cols=119  Identities=24%  Similarity=0.416  Sum_probs=101.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      ++|...+.||+|+||.||++.. +++.||+|.++...   ....|.+|+.++.+++|||++++++++... ..++||||+
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~~---~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~e~~   80 (254)
T cd05083           6 QKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCDV---TAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVMELM   80 (254)
T ss_pred             HHceeeeeeccCCCCceEeccc-CCCceEEEeecCcc---hHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEEECC
Confidence            4577789999999999999985 57889999985432   345799999999999999999999998764 479999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|.++++....     ..+++..+..++.|++.|+.|||+.   +++||
T Consensus        81 ~~~~L~~~l~~~~~-----~~~~~~~~~~~~~qi~~al~~lH~~---~~~H~  124 (254)
T cd05083          81 SKGNLVNFLRTRGR-----ALVSVIQLLQFSLDVAEGMEYLESK---KLVHR  124 (254)
T ss_pred             CCCCHHHHHHhcCc-----CCCCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            99999999976431     1477888899999999999999988   99997

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.60  E-value=7.3e-15  Score=138.77  Aligned_cols=125  Identities=18%  Similarity=0.254  Sum_probs=102.5

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc-cCHHHHHHHHHHHhcCC-CCCCcceeEEEecCCc-----e
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ-GGELQFQTEVEMISMAV-HRNLLRLRGFCMTPTE-----R  360 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~-----~  360 (419)
                      +|+..+.||+|+||.||+|... +++.||+|.++..... .....+.+|+.+++.++ |+|++++++++...+.     .
T Consensus         2 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~   81 (295)
T cd07837           2 AYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSL   81 (295)
T ss_pred             CceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceE
Confidence            5777899999999999999974 6899999998543322 23457889999999995 6999999999987665     7


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++ +|.+++......  ....+++..+..++.||+.||+|||+.   +|+||
T Consensus        82 ~lv~e~~~~-~l~~~~~~~~~~--~~~~~~~~~~~~~~~qi~~~L~~LH~~---~i~H~  134 (295)
T cd07837          82 YLVFEYLDS-DLKKFMDSNGRG--PGRPLPAKTIKSFMYQLLKGVAHCHKH---GVMHR  134 (295)
T ss_pred             EEEeeccCc-CHHHHHHHhccc--CCCCCCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            999999985 899988754321  122578899999999999999999998   99997

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.60  E-value=1.3e-15  Score=149.80  Aligned_cols=118  Identities=19%  Similarity=0.263  Sum_probs=98.1

Q ss_pred             CeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCCh
Q 014778          294 NILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSV  372 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~GsL  372 (419)
                      -++|+|.||+||.|+. .+...+|||.+.+. ..+..+-...|+.+-++++|.|||+++|.|.+.+..-+.||-+|+|||
T Consensus       581 vVLGKGTYG~VYA~RD~~tqvrIaIKEIpek-dsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSL  659 (1226)
T KOG4279|consen  581 VVLGKGTYGTVYAARDMDTQVRIAIKEIPEK-DSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSL  659 (1226)
T ss_pred             EEeecCceeEEEeeccccceeEEEeeecccc-cchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcH
Confidence            4699999999999995 45678999999543 333445678899999999999999999999999999999999999999


Q ss_pred             hhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          373 ASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       373 ~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++|+.+=+..    .=.+...-.+.+||++||.|||++   .||||
T Consensus       660 SsLLrskWGPl----KDNEstm~fYtkQILeGLkYLHen---~IVHR  699 (1226)
T KOG4279|consen  660 SSLLRSKWGPL----KDNESTMNFYTKQILEGLKYLHEN---KIVHR  699 (1226)
T ss_pred             HHHHHhccCCC----ccchhHHHHHHHHHHHHhhhhhhc---ceeec
Confidence            99998653311    113445556899999999999999   99998

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.60  E-value=8e-15  Score=136.81  Aligned_cols=126  Identities=22%  Similarity=0.339  Sum_probs=99.6

Q ss_pred             CCCCCeeCcCCceEEEEEEeC----CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC------
Q 014778          290 FSNRNILGRGGFGKVYKGRLT----DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT------  358 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------  358 (419)
                      |...++||+|+||.||+|.+.    +++.||||.+..... ....+++.+|+.++++++|||++++++++...+      
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            345678999999999999863    367899999864322 223457899999999999999999999886542      


Q ss_pred             ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 ~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..++++||+++|+|.+++...... .....+++.....++.||+.|++|||+.   +|+||
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~  137 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLMSRIG-EEPFTLPLQTLVRFMIDIASGMEYLSSK---NFIHR  137 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHHhccc-CCCCCCCHHHHHHHHHHHHHHHHHHHhC---CEeec
Confidence            247899999999999887643211 1122477888899999999999999998   99997

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.60  E-value=8.8e-15  Score=137.34  Aligned_cols=121  Identities=20%  Similarity=0.365  Sum_probs=103.0

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      |+..+.||+|++|.||+|... +|+.||+|++..... ......+.+|++.++.++|+|++++++++.+.+..+++|||+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~   80 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL   80 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence            455688999999999999964 799999999864322 223457889999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      + ++|.+++.....     ..+++..+..++.|+++||+|||+.   +++||
T Consensus        81 ~-~~l~~~~~~~~~-----~~~~~~~~~~~~~~i~~~L~~lH~~---~~~H~  123 (283)
T cd07835          81 D-LDLKKYMDSSPL-----TGLDPPLIKSYLYQLLQGIAYCHSH---RVLHR  123 (283)
T ss_pred             C-cCHHHHHhhCCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeCC
Confidence            5 699999876532     2578899999999999999999998   99997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.60  E-value=6.3e-15  Score=141.68  Aligned_cols=118  Identities=23%  Similarity=0.276  Sum_probs=99.5

Q ss_pred             CeeCcC--CceEEEEEEe-CCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRG--GFGKVYKGRL-TDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G--~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      ..||+|  +||+||+++. .+|+.||+|.+..... ....+.+.+|+.+++.++||||+++++++...+..++|+||+++
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            346666  8999999996 4799999999864322 22245788999999999999999999999999999999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |++.+++.....     ..+++..+..++.|++.||+|||+.   +|+||
T Consensus        84 ~~l~~~l~~~~~-----~~~~~~~~~~~~~qi~~aL~~lH~~---~ivHr  125 (328)
T cd08226          84 GSANSLLKTYFP-----EGMSEALIGNILFGALRGLNYLHQN---GYIHR  125 (328)
T ss_pred             CCHHHHHHhhcc-----cCCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            999999886431     1477888889999999999999988   99998

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.60  E-value=6.1e-15  Score=140.37  Aligned_cols=122  Identities=20%  Similarity=0.277  Sum_probs=101.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ..|...+.||+|+||.||+|... +++.||+|.+.....  ....+++.+|+++++.++|||++++.++|...+..++|+
T Consensus        15 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~   94 (307)
T cd06607          15 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVM   94 (307)
T ss_pred             hhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEH
Confidence            44777789999999999999964 689999999853221  122356889999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||++ |++.+++.....      .+++.++..++.|++.||.|||+.   +|+||
T Consensus        95 e~~~-g~l~~~~~~~~~------~l~~~~~~~~~~ql~~~L~~LH~~---~i~H~  139 (307)
T cd06607          95 EYCL-GSASDILEVHKK------PLQEVEIAAICHGALQGLAYLHSH---ERIHR  139 (307)
T ss_pred             HhhC-CCHHHHHHHccc------CCCHHHHHHHHHHHHHHHHHHHHC---Cceec
Confidence            9997 578777754321      478888999999999999999998   89997

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.59  E-value=8.8e-15  Score=136.36  Aligned_cols=127  Identities=21%  Similarity=0.321  Sum_probs=106.2

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCC----
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPT----  358 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~----  358 (419)
                      .++++|+..+.||+|+||.||+|... +++.+|+|.+....  ...++|.+|+.+++++ +|+|++++++++....    
T Consensus         3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~--~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~   80 (275)
T cd06608           3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIE--DEEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGN   80 (275)
T ss_pred             CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCc--hhHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCc
Confidence            35678889999999999999999974 67899999985432  2346799999999998 7999999999997654    


Q ss_pred             --ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 --ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 --~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                        ..++||||+++++|.++++....   ....+++..+..++.|++.||.|||+.   +|+||
T Consensus        81 ~~~~~lv~e~~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~~ql~~al~~lH~~---~i~H~  137 (275)
T cd06608          81 DDQLWLVMELCGGGSVTDLVKGLRK---KGKRLKEEWIAYILRETLRGLAYLHEN---KVIHR  137 (275)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhh---cCCCCCHHHHHHHHHHHHHHHHHHhcC---CcccC
Confidence              37999999999999999875321   112578888999999999999999998   99997

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.59  E-value=1.1e-14  Score=134.15  Aligned_cols=121  Identities=20%  Similarity=0.337  Sum_probs=105.5

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecC--CceeEEe
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTP--TERLLVY  364 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv~  364 (419)
                      +|+..+.||+|++|.||+|... +++.|++|.+..... ....+.+.+|++.+++++|+|++++++++...  ...++|+
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   80 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFL   80 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEE
Confidence            3566789999999999999975 689999999854322 22356799999999999999999999999988  8899999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++++|.+++....       .+++.++..++.|+++|++|||+.   +++|+
T Consensus        81 e~~~~~~L~~~~~~~~-------~~~~~~~~~~~~~l~~~l~~lh~~---~~~h~  125 (260)
T cd06606          81 EYVSGGSLSSLLKKFG-------KLPEPVIRKYTRQILEGLAYLHSN---GIVHR  125 (260)
T ss_pred             EecCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            9999999999998654       588899999999999999999998   89996

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.58  E-value=1.5e-14  Score=133.07  Aligned_cols=120  Identities=22%  Similarity=0.401  Sum_probs=104.9

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc-cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      |+..+.||+|++|.||++... +++.||+|.+...... ...+.+.+|++++.+++|+|++++++++.+.+..++++||+
T Consensus         2 y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   81 (254)
T cd06627           2 YQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYA   81 (254)
T ss_pred             ceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEecC
Confidence            566789999999999999864 6789999999644321 23457999999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++++|.+++....       .+++..+..++.|++.|+.|||+.   +|+||
T Consensus        82 ~~~~L~~~~~~~~-------~l~~~~~~~~~~~i~~~l~~lH~~---~i~H~  123 (254)
T cd06627          82 ENGSLRQIIKKFG-------PFPESLVAVYVYQVLQGLAYLHEQ---GVIHR  123 (254)
T ss_pred             CCCcHHHHHHhcc-------CCCHHHHHHHHHHHHHHHHHHhhC---CcccC
Confidence            9999999987653       578889999999999999999999   99997

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.58  E-value=5.4e-15  Score=138.28  Aligned_cols=121  Identities=15%  Similarity=0.210  Sum_probs=105.7

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCC-CCCCcceeEEEecCCceeEEe
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAV-HRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~  364 (419)
                      +|...+.||+|+||.||++... +|+.||+|.+....  .....+.+.+|.+++.+++ |+||+++++++...+..++||
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~   81 (280)
T cd05581           2 DFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVL   81 (280)
T ss_pred             CceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEE
Confidence            5777789999999999999975 78999999986432  1222457889999999998 999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.|++.||+|||+.   +++|+
T Consensus        82 e~~~~~~L~~~l~~~~-------~l~~~~~~~i~~ql~~~l~~Lh~~---~~~H~  126 (280)
T cd05581          82 EYAPNGELLQYIRKYG-------SLDEKCTRFYAAEILLALEYLHSK---GIIHR  126 (280)
T ss_pred             cCCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            9999999999998654       588899999999999999999998   99996

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.58  E-value=7.3e-15  Score=142.11  Aligned_cols=122  Identities=17%  Similarity=0.220  Sum_probs=100.7

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecC------
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTP------  357 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------  357 (419)
                      ..+.|...+.||+|+||.||+|.. .+++.||||++..... ....+.+.+|++++++++|+||+++++++...      
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07878          13 VPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIENF   92 (343)
T ss_pred             hhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccccccc
Confidence            346788889999999999999996 4788999999864321 12345678999999999999999999887543      


Q ss_pred             CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ...++++|++ +++|.++++..        .+++.++..++.||+.||+|||+.   +|+||
T Consensus        93 ~~~~~~~~~~-~~~l~~~~~~~--------~l~~~~~~~i~~qi~~aL~~LH~~---~ivHr  142 (343)
T cd07878          93 NEVYLVTNLM-GADLNNIVKCQ--------KLSDEHVQFLIYQLLRGLKYIHSA---GIIHR  142 (343)
T ss_pred             CcEEEEeecC-CCCHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            3468999988 67998887643        478888999999999999999999   99998

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.58  E-value=1.2e-14  Score=134.22  Aligned_cols=123  Identities=16%  Similarity=0.237  Sum_probs=102.1

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecC-CceeEEec
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTP-TERLLVYP  365 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-~~~~lv~e  365 (419)
                      +|...+.||+|+||.||++... +++.||+|++..... ....+.+.+|++++++++|+|++++.+.+... ...+++||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMG   80 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEec
Confidence            3667789999999999999964 578999999854322 22345789999999999999999999887654 45789999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.++++....     ..+++.++..++.|++.|++|||+.   +|+||
T Consensus        81 ~~~~~~l~~~l~~~~~-----~~l~~~~~~~~~~~l~~~l~~lH~~---~i~H~  126 (257)
T cd08223          81 FCEGGDLYHKLKEQKG-----KLLPENQVVEWFVQIAMALQYLHEK---HILHR  126 (257)
T ss_pred             ccCCCcHHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            9999999999975321     1478889999999999999999999   99997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.58  E-value=1.9e-14  Score=137.54  Aligned_cols=120  Identities=15%  Similarity=0.272  Sum_probs=95.8

Q ss_pred             CCeeCcCCceEEEEEEeC---CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEec--CCceeEEeccC
Q 014778          293 RNILGRGGFGKVYKGRLT---DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT--PTERLLVYPFM  367 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~lv~e~~  367 (419)
                      ...||+|+||.||+|...   +++.||+|.++...   ....+.+|+.++++++||||+++++++..  ....++|+||+
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~   82 (317)
T cd07868           6 GCKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG---ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYA   82 (317)
T ss_pred             ccccccCCCeEEEEEEEccCCCCceEEEEEECCCC---CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEecc
Confidence            367999999999999964   46789999985432   23467899999999999999999998865  34578999999


Q ss_pred             CCCChhhhhcCCccc--cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIV--SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~--~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++ +|.+++......  ......+++..+..++.||+.||+|||+.   +|+||
T Consensus        83 ~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivHr  132 (317)
T cd07868          83 EH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHR  132 (317)
T ss_pred             CC-CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhC---CEEcC
Confidence            75 888887643211  12223578888999999999999999999   99998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.58  E-value=1.6e-14  Score=135.97  Aligned_cols=118  Identities=18%  Similarity=0.222  Sum_probs=102.3

Q ss_pred             CCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCC
Q 014778          290 FSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMV  368 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~  368 (419)
                      |...+.||+|++|.||++.. .+++.+|+|+++.. .....+.+.+|+.+++.++|+|++++++++...+..++|+||++
T Consensus        21 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~-~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~   99 (285)
T cd06648          21 LDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLR-KQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLE   99 (285)
T ss_pred             hhcceEeccCCCeEEEEEEECCCCCEEEEEEEecc-chhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccC
Confidence            44457999999999999996 46889999998532 22234568899999999999999999999999999999999999


Q ss_pred             CCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          369 NGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       369 ~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|.+++...        .+++.++..++.|++.|++|||+.   +|+||
T Consensus       100 ~~~L~~~~~~~--------~~~~~~~~~~~~ql~~~l~~lH~~---~i~H~  139 (285)
T cd06648         100 GGALTDIVTHT--------RMNEEQIATVCLAVLKALSFLHAQ---GVIHR  139 (285)
T ss_pred             CCCHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            99999998763        477888899999999999999999   99997

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.58  E-value=1.2e-14  Score=136.46  Aligned_cols=115  Identities=25%  Similarity=0.347  Sum_probs=93.7

Q ss_pred             eeCcCCceEEEEEEeC-CCCEEEEEEccccccc--cCHHHHHHHHHH---HhcCCCCCCcceeEEEecCCceeEEeccCC
Q 014778          295 ILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ--GGELQFQTEVEM---ISMAVHRNLLRLRGFCMTPTERLLVYPFMV  368 (419)
Q Consensus       295 ~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~--~~~~~f~~E~~~---l~~l~H~niv~l~g~~~~~~~~~lv~e~~~  368 (419)
                      +||+|+||.||++... +++.+|+|.+......  .....+.+|..+   +...+|+|++.+.+++...+..++||||++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            4899999999999964 6899999998543221  112334455443   334579999999999999999999999999


Q ss_pred             CCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          369 NGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       369 ~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|+|.+++....       .+++.++..++.|++.||+|||+.   +|+||
T Consensus        81 ~~~L~~~i~~~~-------~l~~~~~~~i~~qi~~al~~lH~~---~ivH~  121 (279)
T cd05633          81 GGDLHYHLSQHG-------VFSEKEMRFYATEIILGLEHMHNR---FVVYR  121 (279)
T ss_pred             CCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcCCC
Confidence            999999987653       588899999999999999999998   89997

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.58  E-value=1e-14  Score=135.08  Aligned_cols=128  Identities=19%  Similarity=0.286  Sum_probs=102.0

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecC--CceeEEe
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP--TERLLVY  364 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv~  364 (419)
                      +|+..+.+|.|+||.||++.. .+++.||+|.+.... .....+.+.+|+.++++++|+|++++++++...  ...+++|
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence            356678999999999999986 468899999985432 222345688999999999999999999988653  4578999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhcc--ccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSC--VSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~--~p~IiHR  419 (419)
                      ||+++|+|.+++.....   ....+++..+..++.|++.|++|||..+  +.+|+||
T Consensus        81 e~~~~~~L~~~l~~~~~---~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~  134 (265)
T cd08217          81 EYCEGGDLAQLIQKCKK---ERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHR  134 (265)
T ss_pred             hhccCCCHHHHHHHHhh---cccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceec
Confidence            99999999999975421   1225788899999999999999999322  2389996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.58  E-value=1.5e-14  Score=137.57  Aligned_cols=123  Identities=22%  Similarity=0.394  Sum_probs=101.3

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc-----
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE-----  359 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~-----  359 (419)
                      .++|...+.||+|+||.||+|... +++.||||.+..... ......+.+|++++++++||||++++++|...+.     
T Consensus        11 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   90 (310)
T cd07865          11 VSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRY   90 (310)
T ss_pred             hhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCC
Confidence            346888899999999999999964 689999999854322 2223456789999999999999999999877543     


Q ss_pred             ---eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 ---RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ---~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                         .++||||+++ +|.+++.....      .+++.++..++.||+.||+|||++   +|+||
T Consensus        91 ~~~~~lv~e~~~~-~l~~~l~~~~~------~~~~~~~~~i~~qi~~al~~lH~~---~i~H~  143 (310)
T cd07865          91 KGSFYLVFEFCEH-DLAGLLSNKNV------KFTLSEIKKVMKMLLNGLYYIHRN---KILHR  143 (310)
T ss_pred             CceEEEEEcCCCc-CHHHHHHhccc------CCCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence               4999999975 88888865431      478889999999999999999999   99997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.58  E-value=1.1e-14  Score=141.84  Aligned_cols=120  Identities=15%  Similarity=0.164  Sum_probs=98.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC------
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT------  358 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------  358 (419)
                      .+.|...+.||+|+||.||++.. .+|+.||||++.... .......+.+|+.++..++||||+++++++...+      
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   99 (359)
T cd07876          20 LKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEFQ   99 (359)
T ss_pred             hhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCccccc
Confidence            46788889999999999999996 468999999985432 2223457889999999999999999999986543      


Q ss_pred             ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 ~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..++||||+++ +|.+.++.         .+++..+..++.|+++||+|||+.   +|+||
T Consensus       100 ~~~lv~e~~~~-~l~~~~~~---------~~~~~~~~~~~~qi~~~L~~LH~~---~ivHr  147 (359)
T cd07876         100 DVYLVMELMDA-NLCQVIHM---------ELDHERMSYLLYQMLCGIKHLHSA---GIIHR  147 (359)
T ss_pred             eeEEEEeCCCc-CHHHHHhc---------cCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            46899999975 67666643         356677788999999999999999   99998

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.58  E-value=1.4e-14  Score=138.67  Aligned_cols=120  Identities=21%  Similarity=0.306  Sum_probs=100.8

Q ss_pred             CCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccc--cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          290 FSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      |...+.||+|+||.||++.. .++..||+|.+......  .....+.+|++++++++|+|++++++++.+++..++||||
T Consensus        27 f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  106 (317)
T cd06635          27 FTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEY  106 (317)
T ss_pred             hhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeC
Confidence            55668899999999999996 46889999998533221  2235788999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++ |++.+.+.....      .+++.++..++.|++.|+.|||+.   +|+||
T Consensus       107 ~~-g~l~~~~~~~~~------~l~~~~~~~i~~~i~~~l~~lH~~---~i~H~  149 (317)
T cd06635         107 CL-GSASDLLEVHKK------PLQEVEIAAITHGALQGLAYLHSH---NMIHR  149 (317)
T ss_pred             CC-CCHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            97 588887754321      478889999999999999999998   99997

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.58  E-value=9.6e-15  Score=140.90  Aligned_cols=121  Identities=17%  Similarity=0.283  Sum_probs=101.6

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC-----ce
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT-----ER  360 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----~~  360 (419)
                      +++|...+.||+|+||.||+|.. .+|+.||+|.+...........+.+|+.++.+++|+||+++++++....     ..
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   83 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV   83 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence            35788889999999999999986 4789999999864333333456889999999999999999999876543     47


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+||+++ +|.++++..        .+++..+..++.|++.||+|||+.   +|+||
T Consensus        84 ~lv~e~~~~-~l~~~~~~~--------~l~~~~~~~i~~ql~~aL~~LH~~---~ivH~  130 (336)
T cd07849          84 YIVQELMET-DLYKLIKTQ--------HLSNDHIQYFLYQILRGLKYIHSA---NVLHR  130 (336)
T ss_pred             EEEehhccc-CHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            999999975 888887653        478888899999999999999999   99997

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.58  E-value=1.1e-14  Score=137.72  Aligned_cols=114  Identities=18%  Similarity=0.240  Sum_probs=99.7

Q ss_pred             CeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCCh
Q 014778          294 NILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSV  372 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~GsL  372 (419)
                      ..||+|+||.||++.. .+++.||||++... .......+.+|+.+++.++|+|++++++++...+..++||||+++++|
T Consensus        26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L  104 (292)
T cd06657          26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLR-KQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGAL  104 (292)
T ss_pred             HHcCCCCCeEEEEEEEcCCCeEEEEEEeccc-chhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcH
Confidence            5799999999999997 47899999998532 223355789999999999999999999999999999999999999999


Q ss_pred             hhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          373 ASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       373 ~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .+++...        .+++.....++.|++.|++|||+.   +|+||
T Consensus       105 ~~~~~~~--------~~~~~~~~~~~~ql~~~l~~lH~~---givH~  140 (292)
T cd06657         105 TDIVTHT--------RMNEEQIAAVCLAVLKALSVLHAQ---GVIHR  140 (292)
T ss_pred             HHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            9987643        467788889999999999999998   99997

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.58  E-value=7.7e-15  Score=137.69  Aligned_cols=121  Identities=23%  Similarity=0.333  Sum_probs=102.2

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCC-CCCCcceeEEEecCCceeEEeccC
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-HRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      |+..+.||+|+||.||+|... +++.||||++.............+|+..+.+++ |+|++++++++...+..++||||+
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   80 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM   80 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC
Confidence            445688999999999999975 578999999864433223345667999999999 999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                       +|+|.++++...     ...+++.++..++.|++.||.|||++   +|+|+
T Consensus        81 -~~~l~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~Lh~~---~i~H~  123 (283)
T cd07830          81 -EGNLYQLMKDRK-----GKPFSESVIRSIIYQILQGLAHIHKH---GFFHR  123 (283)
T ss_pred             -CCCHHHHHHhcc-----cccCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence             789999887653     12578999999999999999999998   99996

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.57  E-value=1.2e-14  Score=135.32  Aligned_cols=125  Identities=17%  Similarity=0.244  Sum_probs=100.3

Q ss_pred             CCCCCCeeCcCCceEEEEEEeCC--CCEEEEEEccccc---------cccCHHHHHHHHHHHhc-CCCCCCcceeEEEec
Q 014778          289 NFSNRNILGRGGFGKVYKGRLTD--GSLVAVKRLKEER---------TQGGELQFQTEVEMISM-AVHRNLLRLRGFCMT  356 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~~--g~~vAvK~l~~~~---------~~~~~~~f~~E~~~l~~-l~H~niv~l~g~~~~  356 (419)
                      +|+..+.||+|+||.||+|....  ++.+|+|.+....         ......++.+|+.++.+ ++|+|++++++++..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            36667889999999999999754  6889999885321         11123457788888875 799999999999999


Q ss_pred             CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhh-ccccceecC
Q 014778          357 PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKY-SCVSILLFC  419 (419)
Q Consensus       357 ~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~-~~~p~IiHR  419 (419)
                      .+..++||||+++++|.+++.....   ....+++..+..++.|++.||.|||+ .   +|+||
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~l~~~l~~lh~~~---~i~H~  138 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFNSLKE---KKQRFTEERIWNIFVQMVLALRYLHKEK---RIVHR  138 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHhccCC---ceeec
Confidence            9999999999999999998854211   11257888899999999999999996 5   79996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.57  E-value=1.6e-14  Score=136.03  Aligned_cols=121  Identities=22%  Similarity=0.371  Sum_probs=96.3

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc-cCHHHHHHHHHHHhcC---CCCCCcceeEEEecC-----Cc
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ-GGELQFQTEVEMISMA---VHRNLLRLRGFCMTP-----TE  359 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~~-----~~  359 (419)
                      |...+.||+|+||.||+|... +|+.||+|.++..... .....+.+|+.++..+   +||||+++++++...     ..
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~   81 (288)
T cd07863           2 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETK   81 (288)
T ss_pred             ceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCce
Confidence            566788999999999999964 6899999998643222 2234566777776655   799999999988652     34


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++|+||+++ +|.++++....     ..+++.++..++.|++.||+|||+.   +|+||
T Consensus        82 ~~lv~e~~~~-~l~~~~~~~~~-----~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~  132 (288)
T cd07863          82 VTLVFEHVDQ-DLRTYLDKVPP-----PGLPAETIKDLMRQFLRGLDFLHAN---CIVHR  132 (288)
T ss_pred             EEEEEccccc-CHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            7899999984 89998875431     1478889999999999999999999   99997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.57  E-value=2.2e-14  Score=132.13  Aligned_cols=125  Identities=18%  Similarity=0.250  Sum_probs=106.7

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +|...+.||+|+||.||++... +++.||+|++..... ....+++.+|+++++.++|+|++++.+.+...+..++|+||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~   80 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEY   80 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEe
Confidence            3666788999999999999974 688999999964332 23456789999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++++|.++++....   ....+++.++..++.|++.||+|||+.   +++|+
T Consensus        81 ~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lh~~---~~~H~  127 (258)
T cd08215          81 ADGGDLSQKIKKQKK---EGKPFPEEQILDWFVQLCLALKYLHSR---KILHR  127 (258)
T ss_pred             cCCCcHHHHHHHhhc---cCCCcCHHHHHHHHHHHHHHHHHHHhC---CEecc
Confidence            999999999986531   112688899999999999999999998   99996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.57  E-value=8.5e-15  Score=146.66  Aligned_cols=131  Identities=18%  Similarity=0.247  Sum_probs=96.9

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEe-----------------CCCCEEEEEEccccccc-------------cCHHHHHHH
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRL-----------------TDGSLVAVKRLKEERTQ-------------GGELQFQTE  335 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~-----------------~~g~~vAvK~l~~~~~~-------------~~~~~f~~E  335 (419)
                      ..++|...++||+|+||.||+|.+                 .+++.||||++......             ...+.+..|
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence            467899999999999999999974                 23568999998543211             112234457


Q ss_pred             HHHHhcCCCCCC-----cceeEEEec--------CCceeEEeccCCCCChhhhhcCCccc-----------------cCC
Q 014778          336 VEMISMAVHRNL-----LRLRGFCMT--------PTERLLVYPFMVNGSVASCLRGMFIV-----------------SGF  385 (419)
Q Consensus       336 ~~~l~~l~H~ni-----v~l~g~~~~--------~~~~~lv~e~~~~GsL~~~L~~~~~~-----------------~~~  385 (419)
                      +..+.+++|.++     ++++|||..        .+..++||||+++|+|.++++.....                 ...
T Consensus       223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~  302 (507)
T PLN03224        223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMP  302 (507)
T ss_pred             HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcc
Confidence            777788877655     678888764        35689999999999999999853210                 001


Q ss_pred             CcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          386 PSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       386 ~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ...+++..+..++.|+++||+|||+.   +|+||
T Consensus       303 ~~~~~~~~~~~i~~ql~~aL~~lH~~---~ivHr  333 (507)
T PLN03224        303 QDKRDINVIKGVMRQVLTGLRKLHRI---GIVHR  333 (507)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            12356777889999999999999998   89998

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.57  E-value=1.8e-14  Score=138.87  Aligned_cols=116  Identities=18%  Similarity=0.224  Sum_probs=98.5

Q ss_pred             CCeeCcCCceEEEEEEeC-CCCEEEEEEcccccccc-------------CHHHHHHHHHHHhcCCCCCCcceeEEEecCC
Q 014778          293 RNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQG-------------GELQFQTEVEMISMAVHRNLLRLRGFCMTPT  358 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~-------------~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  358 (419)
                      .+.||+|+||.||+|... +++.||||.++......             ....+.+|++++++++|+||+++++++...+
T Consensus        14 ~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   93 (335)
T PTZ00024         14 GAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGD   93 (335)
T ss_pred             hhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecCC
Confidence            467999999999999964 68999999985332111             1225789999999999999999999999999


Q ss_pred             ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 ~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..++||||++ |+|.+++....       .+++.....++.|++.||+|||+.   +|+||
T Consensus        94 ~~~lv~e~~~-~~l~~~l~~~~-------~~~~~~~~~~~~ql~~aL~~LH~~---~i~H~  143 (335)
T PTZ00024         94 FINLVMDIMA-SDLKKVVDRKI-------RLTESQVKCILLQILNGLNVLHKW---YFMHR  143 (335)
T ss_pred             cEEEEEeccc-cCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            9999999997 69999987543       477888899999999999999998   99997

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.57  E-value=2e-14  Score=136.89  Aligned_cols=123  Identities=23%  Similarity=0.397  Sum_probs=102.4

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc-cCHHHHHHHHHHHhcCCCCCCcceeEEEecC--CceeE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTP--TERLL  362 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~l  362 (419)
                      .++|...+.||+|+||.||+|... +|+.||+|.++..... .....+.+|+.++.+++|+|++++++++...  +..++
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFL   85 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEE
Confidence            457888899999999999999974 6899999998643222 2234567899999999999999999998765  45799


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||+++ +|.+++....      ..+++.++..++.|+++|++|||+.   +|+||
T Consensus        86 v~e~~~~-~l~~~l~~~~------~~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~  132 (309)
T cd07845          86 VMEYCEQ-DLASLLDNMP------TPFSESQVKCLMLQLLRGLQYLHEN---FIIHR  132 (309)
T ss_pred             EEecCCC-CHHHHHHhcc------cCCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            9999975 8988887542      1578889999999999999999999   99997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.57  E-value=3.1e-14  Score=130.60  Aligned_cols=121  Identities=23%  Similarity=0.384  Sum_probs=106.0

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      +|+..+.||+|++|.||++... +++.+++|++..... ...+.+.+|++.++.++|+|++++++++......++++||+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~   79 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESK-EKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFC   79 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccch-hHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecC
Confidence            3666789999999999999975 688999999964432 34568999999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++++|.+++....      ..+++..+..++.|+++|+.|||+.   +++||
T Consensus        80 ~~~~L~~~~~~~~------~~~~~~~~~~i~~~i~~~l~~lh~~---~i~h~  122 (253)
T cd05122          80 SGGSLKDLLKSTN------QTLTESQIAYVCKELLKGLEYLHSN---GIIHR  122 (253)
T ss_pred             CCCcHHHHHhhcC------CCCCHHHHHHHHHHHHHHHHHhhcC---CEecC
Confidence            9999999987653      1578889999999999999999998   99997

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.57  E-value=1.3e-14  Score=136.72  Aligned_cols=120  Identities=21%  Similarity=0.266  Sum_probs=101.3

Q ss_pred             CCCCCeeCcCCceEEEEEEe----CCCCEEEEEEcccccc---ccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCcee
Q 014778          290 FSNRNILGRGGFGKVYKGRL----TDGSLVAVKRLKEERT---QGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~~---~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~  361 (419)
                      |...+.||+|+||.||++..    .+++.||||.++....   ....+.+.+|+.++.++ +|+|++++.+.+...+..+
T Consensus         2 ~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~   81 (288)
T cd05583           2 FELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLH   81 (288)
T ss_pred             ceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEE
Confidence            55678899999999999884    2578899999863321   22345688999999999 5999999999998888999


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++|+|.+++....       .+++..+..++.|+++||+|||+.   +++||
T Consensus        82 lv~e~~~~~~L~~~~~~~~-------~~~~~~~~~~~~ql~~~l~~lH~~---~~~H~  129 (288)
T cd05583          82 LILDYVNGGELFTHLYQRE-------HFTESEVRVYIAEIVLALDHLHQL---GIIYR  129 (288)
T ss_pred             EEEecCCCCcHHHHHhhcC-------CcCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            9999999999999987543       477888889999999999999988   99997

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.57  E-value=1.3e-14  Score=139.62  Aligned_cols=125  Identities=17%  Similarity=0.256  Sum_probs=103.0

Q ss_pred             HHHHhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEec-CCc
Q 014778          283 LQVATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMT-PTE  359 (419)
Q Consensus       283 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~  359 (419)
                      +...+++|+..+.||+|+||.||++... +++.||||++.... .....+.+.+|++++..++|||++++.+++.. ...
T Consensus         5 ~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~   84 (328)
T cd07856           5 VFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLED   84 (328)
T ss_pred             eeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCCc
Confidence            3446778888999999999999999854 78999999885322 22234678899999999999999999998876 457


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++|+||+. ++|.++++..        .+++.....++.|+++||+|||+.   +|+||
T Consensus        85 ~~lv~e~~~-~~L~~~~~~~--------~~~~~~~~~~~~ql~~aL~~LH~~---~iiH~  132 (328)
T cd07856          85 IYFVTELLG-TDLHRLLTSR--------PLEKQFIQYFLYQILRGLKYVHSA---GVVHR  132 (328)
T ss_pred             EEEEeehhc-cCHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            889999984 6899888653        356667778999999999999998   99997

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.57  E-value=1.9e-15  Score=136.18  Aligned_cols=126  Identities=17%  Similarity=0.302  Sum_probs=103.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC---C--CCEEEEEEccccccccC-HHHHHHHHHHHhcCCCCCCcceeEEEec-CCce
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT---D--GSLVAVKRLKEERTQGG-ELQFQTEVEMISMAVHRNLLRLRGFCMT-PTER  360 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~---~--g~~vAvK~l~~~~~~~~-~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~~  360 (419)
                      ..|.....||+|.||.||+|.-.   +  .+.+|+|+++...+..+ .....+|+.+++.++|||++.|..++.. +...
T Consensus        24 ~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~v  103 (438)
T KOG0666|consen   24 FEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKKV  103 (438)
T ss_pred             HHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCceE
Confidence            45677788999999999999742   2  23799999975543322 4577899999999999999999998887 7788


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++++||.+. +|.+.++..+....  ..++-.....+..||+.|++|||++   -|+||
T Consensus       104 ~l~fdYAEh-DL~~II~fHr~~~~--~~lp~~mvKsilwQil~Gv~YLH~N---WvlHR  156 (438)
T KOG0666|consen  104 WLLFDYAEH-DLWHIIKFHRASKA--KQLPRSMVKSILWQILDGVHYLHSN---WVLHR  156 (438)
T ss_pred             EEEehhhhh-hHHHHHHHhccchh--ccCCHHHHHHHHHHHHhhhHHHhhh---heeec
Confidence            999999998 99999986654322  3567777889999999999999999   99998

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.56  E-value=2.2e-14  Score=134.58  Aligned_cols=120  Identities=22%  Similarity=0.420  Sum_probs=101.9

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecC--CceeEEec
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP--TERLLVYP  365 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv~e  365 (419)
                      |+..+.||+|+||.||+|... +++.+|+|++.... .....+.+.+|+++++.++|+|++++++++...  +..++|+|
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence            345678999999999999975 58899999996543 222345788999999999999999999999988  78999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++ +|.+++....      ..+++.++..++.||++|++|||+.   +++|+
T Consensus        81 ~~~~-~l~~~~~~~~------~~~~~~~~~~i~~~i~~al~~LH~~---~~~h~  124 (287)
T cd07840          81 YMDH-DLTGLLDSPE------VKFTESQIKCYMKQLLEGLQYLHSN---GILHR  124 (287)
T ss_pred             cccc-cHHHHHhccC------CCCCHHHHHHHHHHHHHHHHHHHHC---Cceec
Confidence            9985 8998887642      1588889999999999999999998   89996

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.56  E-value=1.9e-14  Score=139.20  Aligned_cols=122  Identities=18%  Similarity=0.260  Sum_probs=101.0

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC-----
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT-----  358 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----  358 (419)
                      ..+.|+..+.||+|+||.||++.. .+|..||||++..... ......+.+|++++++++|+||+++++++....     
T Consensus        13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07880          13 VPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLDRF   92 (343)
T ss_pred             cccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccccc
Confidence            355788889999999999999985 4789999999853221 222346889999999999999999999987653     


Q ss_pred             -ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 -ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 -~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                       ..++||||+ +++|.+++...        .+++..+..++.|+++||+|||+.   +|+||
T Consensus        93 ~~~~lv~e~~-~~~l~~~~~~~--------~l~~~~~~~i~~qi~~al~~LH~~---gi~H~  142 (343)
T cd07880          93 HDFYLVMPFM-GTDLGKLMKHE--------KLSEDRIQFLVYQMLKGLKYIHAA---GIIHR  142 (343)
T ss_pred             ceEEEEEecC-CCCHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence             358999999 67998887643        477888999999999999999998   99997

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.56  E-value=2.9e-14  Score=136.13  Aligned_cols=119  Identities=15%  Similarity=0.283  Sum_probs=95.0

Q ss_pred             CeeCcCCceEEEEEEeC---CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEec--CCceeEEeccCC
Q 014778          294 NILGRGGFGKVYKGRLT---DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT--PTERLLVYPFMV  368 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~lv~e~~~  368 (419)
                      ..||+|+||.||+|+..   ++..||+|.++...   ....+.+|++++++++||||+++++++..  +...++|+||++
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~   83 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG---ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAE   83 (317)
T ss_pred             eEeccCCCeeEEEEEecCCCccceEEEEEecCCC---CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeC
Confidence            67999999999999964   45789999985432   23468899999999999999999998854  456789999988


Q ss_pred             CCChhhhhcCCccc--cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          369 NGSVASCLRGMFIV--SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       369 ~GsL~~~L~~~~~~--~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      + +|.+++......  ......+++..+..++.||+.||+|||+.   +|+||
T Consensus        84 ~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~---~ivH~  132 (317)
T cd07867          84 H-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHAN---WVLHR  132 (317)
T ss_pred             C-cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhC---CEEcC
Confidence            5 788877533211  11223578888999999999999999998   99997

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.56  E-value=1.5e-14  Score=142.68  Aligned_cols=115  Identities=14%  Similarity=0.119  Sum_probs=99.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC---CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT---DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ..|...+.||+|+||.||++...   .+..||||.+...      +.+.+|++++++++|||||++++++......++||
T Consensus        92 ~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~------~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~  165 (392)
T PHA03207         92 MQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG------KTPGREIDILKTISHRAIINLIHAYRWKSTVCMVM  165 (392)
T ss_pred             CceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc------ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEe
Confidence            46888899999999999999853   3578999988532      24578999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+. ++|.+++....       .+++.++..++.||+.||+|||+.   +||||
T Consensus       166 e~~~-~~l~~~l~~~~-------~l~~~~~~~i~~ql~~aL~~LH~~---givHr  209 (392)
T PHA03207        166 PKYK-CDLFTYVDRSG-------PLPLEQAITIQRRLLEALAYLHGR---GIIHR  209 (392)
T ss_pred             hhcC-CCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            9996 68999885433       588899999999999999999998   99998

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.56  E-value=1.1e-14  Score=134.44  Aligned_cols=125  Identities=16%  Similarity=0.245  Sum_probs=104.8

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +|+..+.||+|+||.||++.. .+++.+|+|.+.... ......++.+|++++++++|+||+++.+++......++|+||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEY   80 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehh
Confidence            366678999999999999985 478899999985432 222345788999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++++|.+++.+...   ....+++..+..++.|+++||+|||+.   +|+||
T Consensus        81 ~~~~~L~~~~~~~~~---~~~~~~~~~~~~~~~~l~~al~~lh~~---~i~h~  127 (256)
T cd08530          81 APFGDLSKAISKRKK---KRKLIPEQEIWRIFIQLLRGLQALHEQ---KILHR  127 (256)
T ss_pred             cCCCCHHHHHHHHHh---hcCCCCHHHHHHHHHHHHHHHHHHhhC---CcccC
Confidence            999999999876321   112578888999999999999999998   99997

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.56  E-value=7.1e-15  Score=135.32  Aligned_cols=121  Identities=16%  Similarity=0.256  Sum_probs=100.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccc-ccccCHHHHHHHHHHHhcCCCCCCcceeEEEec-----CCce
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEE-RTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT-----PTER  360 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-----~~~~  360 (419)
                      ..|...+.||+|+||.|+++.. .+|+.||||++... ......+.-.+|+++|+.++|+||+.+......     -...
T Consensus        22 ~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~f~Dv  101 (359)
T KOG0660|consen   22 RYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDKFNDV  101 (359)
T ss_pred             ceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccccccccee
Confidence            3455568899999999999996 47999999999532 222234577899999999999999999998876     3568


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|+|+|+. +|.+.++.+.       .++..-+.-+..|+++||.|+|+.   +|+||
T Consensus       102 YiV~elMet-DL~~iik~~~-------~L~d~H~q~f~YQiLrgLKyiHSA---nViHR  149 (359)
T KOG0660|consen  102 YLVFELMET-DLHQIIKSQQ-------DLTDDHAQYFLYQILRGLKYIHSA---NVIHR  149 (359)
T ss_pred             EEehhHHhh-HHHHHHHcCc-------cccHHHHHHHHHHHHHhcchhhcc---ccccc
Confidence            999999976 9999998765       366666677899999999999999   99998

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.56  E-value=2.1e-14  Score=139.08  Aligned_cols=129  Identities=15%  Similarity=0.212  Sum_probs=105.6

Q ss_pred             cHHHHHHHhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEec
Q 014778          279 SLRELQVATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMT  356 (419)
Q Consensus       279 ~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~  356 (419)
                      ...++...+++|...+.||+|+||.||+|.. .+|+.||+|++.... .....+.+.+|+.++.+++|+||+++.+++..
T Consensus         8 ~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~~~   87 (345)
T cd07877           8 LNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTP   87 (345)
T ss_pred             HHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeeeee
Confidence            3456667788999999999999999999985 578999999986422 12224568899999999999999999998864


Q ss_pred             C------CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          357 P------TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       357 ~------~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .      ...++++|++ +++|.+++...        .+++..+..++.|+++||+|||+.   +|+||
T Consensus        88 ~~~~~~~~~~~lv~~~~-~~~L~~~~~~~--------~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~  144 (345)
T cd07877          88 ARSLEEFNDVYLVTHLM-GADLNNIVKCQ--------KLTDDHVQFLIYQILRGLKYIHSA---DIIHR  144 (345)
T ss_pred             cccccccccEEEEehhc-ccCHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            3      3367888876 67998887643        477888899999999999999999   99997

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.56  E-value=2.7e-14  Score=133.96  Aligned_cols=115  Identities=24%  Similarity=0.341  Sum_probs=93.6

Q ss_pred             eeCcCCceEEEEEEe-CCCCEEEEEEccccccc--cCHHHHHHHHH---HHhcCCCCCCcceeEEEecCCceeEEeccCC
Q 014778          295 ILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQ--GGELQFQTEVE---MISMAVHRNLLRLRGFCMTPTERLLVYPFMV  368 (419)
Q Consensus       295 ~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~--~~~~~f~~E~~---~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~  368 (419)
                      +||+|+||.||++.. .+++.||+|.+......  .....+..|..   .++...|||++++.+++...+..++|+||++
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            489999999999986 46889999998543211  11223444443   4455689999999999999999999999999


Q ss_pred             CCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          369 NGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       369 ~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|+|.+++....       .+++.++..++.|+++|++|||+.   +|+||
T Consensus        81 g~~L~~~l~~~~-------~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~  121 (278)
T cd05606          81 GGDLHYHLSQHG-------VFSEAEMRFYAAEIILGLEHMHNR---FVVYR  121 (278)
T ss_pred             CCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CEEcC
Confidence            999999887543       588999999999999999999998   89997

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.56  E-value=1.6e-14  Score=139.22  Aligned_cols=121  Identities=14%  Similarity=0.218  Sum_probs=101.8

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEec----CCcee
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMT----PTERL  361 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~  361 (419)
                      ++|+..+.||+|+||.||+|.. .+|+.||+|++..... ....+.+.+|+.++.+++||||+++.+++..    ....+
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   84 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVY   84 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEE
Confidence            5788889999999999999996 4689999999864322 2234567889999999999999999998764    34579


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|+||+. |+|.++++...       .+++..+..++.||++||+|||+.   +|+||
T Consensus        85 lv~e~~~-~~l~~~~~~~~-------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~  131 (334)
T cd07855          85 VVMDLME-SDLHHIIHSDQ-------PLTEEHIRYFLYQLLRGLKYIHSA---NVIHR  131 (334)
T ss_pred             EEEehhh-hhHHHHhccCC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            9999996 69999987653       478889999999999999999998   99997

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.56  E-value=3e-14  Score=132.05  Aligned_cols=116  Identities=15%  Similarity=0.204  Sum_probs=94.7

Q ss_pred             CeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHH-hcCCCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMI-SMAVHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l-~~l~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      +.||+|+||.||+|... +|+.||||.++....  ......+..|...+ ...+|+|++++++++...+..++|+||+++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            46899999999999964 688999999853321  11223455565544 456899999999999999999999999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|.++++...       .+++..+..++.|++.||.|||+.   +|+||
T Consensus        82 ~~L~~~l~~~~-------~~~~~~~~~i~~qi~~aL~~lH~~---~i~H~  121 (260)
T cd05611          82 GDCASLIKTLG-------GLPEDWAKQYIAEVVLGVEDLHQR---GIIHR  121 (260)
T ss_pred             CCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            99999997643       477888889999999999999998   99997

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.55  E-value=4.3e-14  Score=134.82  Aligned_cols=124  Identities=16%  Similarity=0.301  Sum_probs=100.4

Q ss_pred             CCCCCeeCcCCceEEEEEEeC---CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecC--CceeE
Q 014778          290 FSNRNILGRGGFGKVYKGRLT---DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP--TERLL  362 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~l  362 (419)
                      |...+.||+|+||.||+|...   +++.||+|.+....  .......+.+|+.++.+++|||++++++++.+.  +..++
T Consensus         2 y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   81 (316)
T cd07842           2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYL   81 (316)
T ss_pred             ceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEE
Confidence            556688999999999999964   47899999996432  122245688999999999999999999999988  77999


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||+++ ++.+++......  ....++...+..++.||+.||+|||+.   +|+||
T Consensus        82 v~e~~~~-~l~~~~~~~~~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~h~  132 (316)
T cd07842          82 LFDYAEH-DLWQIIKFHRQA--KRVSIPPSMVKSLLWQILNGVHYLHSN---WVLHR  132 (316)
T ss_pred             EEeCCCc-CHHHHHHhhccC--CCcCcCHHHHHHHHHHHHHHHHHHHhC---CEeeC
Confidence            9999985 777776543211  112577888889999999999999998   99997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.55  E-value=4.7e-14  Score=131.56  Aligned_cols=123  Identities=18%  Similarity=0.154  Sum_probs=97.0

Q ss_pred             HHHHHHhhCCCCCCee--CcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhc-CCCCCCcceeEEEec
Q 014778          281 RELQVATDNFSNRNIL--GRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISM-AVHRNLLRLRGFCMT  356 (419)
Q Consensus       281 ~~~~~~~~~~~~~~~l--G~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~-l~H~niv~l~g~~~~  356 (419)
                      .+...-.++|...+.+  |+|+||.||++.. .++..+|+|.+......    ..  |+..... .+|+|++++++++..
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~----~~--e~~~~~~~~~h~~iv~~~~~~~~   80 (267)
T PHA03390          7 SELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFN----AI--EPMVHQLMKDNPNFIKLYYSVTT   80 (267)
T ss_pred             HHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcc----hh--hHHHHHHhhcCCCEEEEEEEEec
Confidence            3444445566666665  9999999999996 46889999998543211    11  2222221 279999999999999


Q ss_pred             CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          357 PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       357 ~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++..++||||+++|+|.++++...       .+++.++..++.|+++|+.|||+.   +|+||
T Consensus        81 ~~~~~iv~e~~~~~~L~~~l~~~~-------~l~~~~~~~~~~qi~~~l~~lH~~---~i~H~  133 (267)
T PHA03390         81 LKGHVLIMDYIKDGDLFDLLKKEG-------KLSEAEVKKIIRQLVEALNDLHKH---NIIHN  133 (267)
T ss_pred             CCeeEEEEEcCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeeeC
Confidence            999999999999999999998653       588999999999999999999998   89997

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.55  E-value=1.6e-14  Score=137.77  Aligned_cols=116  Identities=18%  Similarity=0.199  Sum_probs=94.8

Q ss_pred             eeCcCCceEEEEEEeCCCCEEEEEEcccc-ccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCChh
Q 014778          295 ILGRGGFGKVYKGRLTDGSLVAVKRLKEE-RTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVA  373 (419)
Q Consensus       295 ~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~-~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~GsL~  373 (419)
                      .+|.|+++.||++.. +++.||||+++.. ......+.+.+|+++++.++|+||+++++++...+..+++|||+++|+|.
T Consensus         9 ~~~~~~~v~~~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~   87 (314)
T cd08216           9 CFEDLMIVHLAKHKP-TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCE   87 (314)
T ss_pred             hhcCCceEEEEEecC-CCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCHH
Confidence            344555555555554 6899999998643 22334567999999999999999999999999999999999999999999


Q ss_pred             hhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          374 SCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       374 ~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++++....     ..+++.....++.|+++||+|||+.   +|+||
T Consensus        88 ~~l~~~~~-----~~~~~~~~~~~~~~l~~~L~~LH~~---~ivH~  125 (314)
T cd08216          88 DLLKTHFP-----EGLPELAIAFILKDVLNALDYIHSK---GFIHR  125 (314)
T ss_pred             HHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            99986421     1467778889999999999999999   99997

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.55  E-value=1.8e-14  Score=137.99  Aligned_cols=118  Identities=24%  Similarity=0.401  Sum_probs=99.0

Q ss_pred             CCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCC
Q 014778          293 RNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNG  370 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~G  370 (419)
                      .+++|+|.||+||-|+. ++|+.||||.++... ....+.+..+|+.+|.+++||.||.+..-|.+++..++|||-+. |
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~-G  647 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLH-G  647 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhc-c
Confidence            48899999999999997 489999999996544 23345689999999999999999999999999999999999885 5


Q ss_pred             ChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          371 SVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       371 sL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +..+.+-....  +   ++++.....+..||+.||+|||..   +|+|+
T Consensus       648 DMLEMILSsEk--g---RL~er~TkFlvtQIL~ALr~LH~k---nIvHC  688 (888)
T KOG4236|consen  648 DMLEMILSSEK--G---RLPERITKFLVTQILVALRYLHFK---NIVHC  688 (888)
T ss_pred             hHHHHHHHhhc--c---cchHHHHHHHHHHHHHHHHHhhhc---ceeec
Confidence            76666543321  1   577777778899999999999999   99996

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.55  E-value=1e-14  Score=135.12  Aligned_cols=124  Identities=16%  Similarity=0.204  Sum_probs=99.5

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc----cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER----TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      |...+.||+|+||.||++... .+..+++|.++...    ......++.+|+.++++++|||++++++++.+.+..++||
T Consensus         2 y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (260)
T cd08222           2 YILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIIT   81 (260)
T ss_pred             ceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEE
Confidence            556788999999999999864 34456666654211    1223346778999999999999999999999998999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++++|.++++....   ....+++.++..++.|+++|+.|||+.   +|+||
T Consensus        82 e~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~lH~~---~i~h~  130 (260)
T cd08222          82 EYCEGRDLDCKLEELKH---TGKTLSENQVCEWFIQLLLGVHYMHQR---RILHR  130 (260)
T ss_pred             EeCCCCCHHHHHHHHhh---cccccCHHHHHHHHHHHHHHHHHHHHc---Ccccc
Confidence            99999999998875321   112688899999999999999999998   99996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.55  E-value=2.3e-14  Score=139.29  Aligned_cols=121  Identities=14%  Similarity=0.163  Sum_probs=99.1

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC-----
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT-----  358 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----  358 (419)
                      ..++|...+.||+|+||.||++... .++.||||++..... ....+.+.+|+.+++.++||||+++++++....     
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   94 (355)
T cd07874          15 VLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEEF   94 (355)
T ss_pred             hhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeecccccccc
Confidence            4567888899999999999999864 688999999964322 223457889999999999999999999886542     


Q ss_pred             -ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 -ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 -~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                       ..++||||+++ ++.+.+..         .+++..+..++.|+++||+|||+.   +|+||
T Consensus        95 ~~~~lv~e~~~~-~l~~~~~~---------~l~~~~~~~~~~qi~~aL~~LH~~---givHr  143 (355)
T cd07874          95 QDVYLVMELMDA-NLCQVIQM---------ELDHERMSYLLYQMLCGIKHLHSA---GIIHR  143 (355)
T ss_pred             ceeEEEhhhhcc-cHHHHHhh---------cCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence             46899999975 67776653         366777888999999999999999   99998

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.55  E-value=3.5e-14  Score=138.52  Aligned_cols=120  Identities=13%  Similarity=0.157  Sum_probs=98.8

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecC------C
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP------T  358 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~  358 (419)
                      .++|...+.||+|+||.||++... .++.||||++.... .....+.+.+|+.+++.++||||+++++++...      .
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~~  102 (364)
T cd07875          23 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  102 (364)
T ss_pred             hcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeecccccccccC
Confidence            467888899999999999999964 68899999996432 222345788999999999999999999987653      3


Q ss_pred             ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 ~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..++||||+++ +|.+++..         .+++..+..++.|+++||+|||+.   +|+||
T Consensus       103 ~~~lv~e~~~~-~l~~~~~~---------~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~  150 (364)
T cd07875         103 DVYIVMELMDA-NLCQVIQM---------ELDHERMSYLLYQMLCGIKHLHSA---GIIHR  150 (364)
T ss_pred             eEEEEEeCCCC-CHHHHHHh---------cCCHHHHHHHHHHHHHHHHHHhhC---CeecC
Confidence            46999999975 77777653         366777888999999999999998   99998

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.55  E-value=3.1e-15  Score=130.89  Aligned_cols=127  Identities=20%  Similarity=0.239  Sum_probs=108.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEE-eCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecC-----Ccee
Q 014778          288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP-----TERL  361 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~~~  361 (419)
                      +.|...+.+|+|+|..||.++ +.++..+|+|++.... .++.+..++|++.-++++|||++++++++..+     .+.|
T Consensus        21 ~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~-~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~y   99 (302)
T KOG2345|consen   21 KRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHS-QEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAY   99 (302)
T ss_pred             ceEEEeeeecCCCceeeeeecccCcccchhhheeeccc-hHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEE
Confidence            457777999999999999999 6789999999996543 34566889999999999999999999988664     3489


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|...|||.+.+.....   .+..+++.+.+.++.+|++||++||+. .|+.+||
T Consensus       100 ll~Pyy~~Gsl~d~i~~~k~---kg~~~sE~~iL~if~gic~gL~~lH~~-~~~yAH~  153 (302)
T KOG2345|consen  100 LLLPYYKRGSLLDEIERLKI---KGNFVSEAQILWIFLGICRGLEALHEK-EPPYAHR  153 (302)
T ss_pred             EEeehhccccHHHHHHHHhh---cCCccCHHHHHHHHHHHHHHHHHHhcc-CCccccc
Confidence            99999999999999987643   233799999999999999999999965 5578887

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.54  E-value=3e-14  Score=136.90  Aligned_cols=113  Identities=16%  Similarity=0.075  Sum_probs=86.6

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC--CCCEEEEEEccccc----cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCce
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT--DGSLVAVKRLKEER----TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~--~g~~vAvK~l~~~~----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  360 (419)
                      .+.|...+.||+|+||+||+|...  +++.||||++....    .....+.|.+|+++|.+++|+|+++.+..   .+..
T Consensus        17 ~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~---~~~~   93 (365)
T PRK09188         17 SARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLA---TGKD   93 (365)
T ss_pred             cCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEE---cCCc
Confidence            456888899999999999999864  57888999874221    11124569999999999999999963322   2457


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++++|... ....       .      ..++.|+++||+|||+.   +|+||
T Consensus        94 ~LVmE~~~G~~L~~~-~~~~-------~------~~~~~~i~~aL~~lH~~---gIiHr  135 (365)
T PRK09188         94 GLVRGWTEGVPLHLA-RPHG-------D------PAWFRSAHRALRDLHRA---GITHN  135 (365)
T ss_pred             EEEEEccCCCCHHHh-Cccc-------h------HHHHHHHHHHHHHHHHC---CCeeC
Confidence            999999999999632 1110       1      34688999999999999   99998

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.54  E-value=2.6e-14  Score=137.89  Aligned_cols=121  Identities=16%  Similarity=0.275  Sum_probs=99.8

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc-cccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCC--cee
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER-TQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPT--ERL  361 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~--~~~  361 (419)
                      .++|...+.||+|+||.||+|... +|+.+|||++.... .......+.+|+.++.++ +|+||+++++++...+  ..+
T Consensus         6 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~   85 (337)
T cd07852           6 LRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIY   85 (337)
T ss_pred             hhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEE
Confidence            456777789999999999999975 68899999985321 122334678899999999 9999999999987543  579


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||++ ++|.++++..        .+.+.++..++.||+.||+|||+.   +|+||
T Consensus        86 lv~e~~~-~~L~~~~~~~--------~~~~~~~~~i~~qi~~~L~~LH~~---~i~H~  131 (337)
T cd07852          86 LVFEYME-TDLHAVIRAN--------ILEDVHKRYIMYQLLKALKYIHSG---NVIHR  131 (337)
T ss_pred             EEecccc-cCHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            9999998 5999988754        367778888999999999999998   99997

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.54  E-value=7.8e-15  Score=140.12  Aligned_cols=122  Identities=18%  Similarity=0.214  Sum_probs=105.3

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccc-cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      -|+..+.||+|-|+.|-.++. -+|..||||+++..... -......+|++.|+-++|||||+|+.+.......|||.|.
T Consensus        19 LYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLEL   98 (864)
T KOG4717|consen   19 LYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILEL   98 (864)
T ss_pred             eehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEEe
Confidence            356668899999999998884 58999999999654322 2244688999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      =.+|+|++|+-++..      .+.+..+.+++.||++|+.|.|.-   .+|||
T Consensus        99 GD~GDl~DyImKHe~------Gl~E~La~kYF~QI~~AI~YCHqL---HVVHR  142 (864)
T KOG4717|consen   99 GDGGDLFDYIMKHEE------GLNEDLAKKYFAQIVHAISYCHQL---HVVHR  142 (864)
T ss_pred             cCCchHHHHHHhhhc------cccHHHHHHHHHHHHHHHHHHhhh---hhhcc
Confidence            999999999976543      588888999999999999999988   89998

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.54  E-value=6.7e-14  Score=133.67  Aligned_cols=120  Identities=21%  Similarity=0.295  Sum_probs=100.0

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc--cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      |...+.||+|+||.||+|+.. +|+.||+|.+......  ...+.+.+|+++++.++|+|++++++++.+.+..++||||
T Consensus        23 ~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  102 (313)
T cd06633          23 FVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEY  102 (313)
T ss_pred             hhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEec
Confidence            444578999999999999964 6889999998533221  2235688999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++ |++.+++.....      .+++.++..++.|++.|+.|||+.   +|+||
T Consensus       103 ~~-~~l~~~l~~~~~------~l~~~~~~~~~~qi~~al~~LH~~---gi~H~  145 (313)
T cd06633         103 CL-GSASDLLEVHKK------PLQEVEIAAITHGALQGLAYLHSH---NMIHR  145 (313)
T ss_pred             CC-CCHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            96 588887765321      478888999999999999999998   99997

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>PLN03150 hypothetical protein; Provisional

Probab=99.54  E-value=1.3e-14  Score=150.19  Aligned_cols=112  Identities=31%  Similarity=0.523  Sum_probs=101.7

Q ss_pred             CCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcc
Q 014778           94 NLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLS  173 (419)
Q Consensus        94 ~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~  173 (419)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|+|++|+++|.+|..++++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcCCCCCCCCC--CccccccccccCCCCCCCCC
Q 014778          174 NNKLTGDIPTNG--SFSLFTPISFANNQLNNPPP  205 (419)
Q Consensus       174 ~N~l~g~~p~~~--~~~~~~~~~~~~n~~~~~~~  205 (419)
                      +|+++|.+|...  .+..+..+++.+|...|..+
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            999999999642  22345677889998877643

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.53  E-value=2.7e-14  Score=133.76  Aligned_cols=120  Identities=21%  Similarity=0.333  Sum_probs=102.9

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      |+..+.||+|.||.||+|+.. +++.||+|.+.... .....+.+.+|+.++++++|+|++++++++.+.+..++|+||+
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   80 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYC   80 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCc
Confidence            345578999999999999975 58999999996443 2223457889999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      + ++|.+++....      ..+++.++..++.|+++||+|||+.   +|+||
T Consensus        81 ~-~~l~~~i~~~~------~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~  122 (282)
T cd07829          81 D-MDLKKYLDKRP------GPLSPNLIKSIMYQLLRGLAYCHSH---RILHR  122 (282)
T ss_pred             C-cCHHHHHHhhc------cCCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            8 59999998653      1588889999999999999999999   99997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.53  E-value=4.3e-14  Score=136.46  Aligned_cols=121  Identities=17%  Similarity=0.305  Sum_probs=100.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecC-----Cce
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP-----TER  360 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~~  360 (419)
                      +.|...+.||+|+||+||++.. .+++.||||.++... .......+.+|+.++..++|+||+++++++...     ...
T Consensus         5 ~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~   84 (337)
T cd07858           5 TKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFNDV   84 (337)
T ss_pred             cceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCcE
Confidence            3577788999999999999996 478999999986432 222345678899999999999999999988654     347


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+||+. ++|.+++....       .+++..+..++.|++.||.|||+.   +|+||
T Consensus        85 ~lv~e~~~-~~L~~~~~~~~-------~l~~~~~~~i~~qi~~aL~~LH~~---~i~H~  132 (337)
T cd07858          85 YIVYELMD-TDLHQIIRSSQ-------TLSDDHCQYFLYQLLRGLKYIHSA---NVLHR  132 (337)
T ss_pred             EEEEeCCC-CCHHHHHhcCC-------CCCHHHHHHHHHHHHHHHHHHHhC---CEecC
Confidence            99999997 68998887643       588888999999999999999998   99997

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.53  E-value=4.6e-14  Score=133.53  Aligned_cols=123  Identities=15%  Similarity=0.320  Sum_probs=99.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCC-CCCCcceeEEEecCCceeEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-HRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      ++|...+.||+|+||.||+|... +++.||||.++.........++..|+..+.+.. |+||+++++++.+....++|||
T Consensus        15 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e   94 (296)
T cd06618          15 NDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICME   94 (296)
T ss_pred             chheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEee
Confidence            55677799999999999999986 489999999964333333456777887777765 9999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++ ++.+++.....      .+++..+..++.||++||+|||+.  ++|+||
T Consensus        95 ~~~~-~l~~l~~~~~~------~l~~~~~~~i~~~i~~~l~~lH~~--~~i~H~  139 (296)
T cd06618          95 LMST-CLDKLLKRIQG------PIPEDILGKMTVAIVKALHYLKEK--HGVIHR  139 (296)
T ss_pred             ccCc-CHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhh--CCEecC
Confidence            9864 77776654321      578888889999999999999963  279997

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.53  E-value=3.8e-14  Score=137.07  Aligned_cols=119  Identities=18%  Similarity=0.200  Sum_probs=99.5

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecC---------
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP---------  357 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~---------  357 (419)
                      ..|...+.||+|+||.||+|.. .+|+.||+|.+.... ....+.+.+|++++++++||||+++++++...         
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~-~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   83 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTD-PQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVG   83 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCC-CchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccc
Confidence            4677789999999999999996 468999999985432 23456789999999999999999999776553         


Q ss_pred             -----CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 -----TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 -----~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                           ...++|+||++ ++|.+++...        .+++..+..++.||+.||+|||+.   +|+||
T Consensus        84 ~~~~~~~~~lv~e~~~-~~L~~~~~~~--------~l~~~~~~~~~~qi~~aL~~LH~~---givH~  138 (342)
T cd07854          84 SLTELNSVYIVQEYME-TDLANVLEQG--------PLSEEHARLFMYQLLRGLKYIHSA---NVLHR  138 (342)
T ss_pred             cccccceEEEEeeccc-ccHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence                 34689999998 5998887643        477888899999999999999999   99997

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.52  E-value=1.4e-15  Score=148.32  Aligned_cols=117  Identities=17%  Similarity=0.256  Sum_probs=99.4

Q ss_pred             CCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCC
Q 014778          293 RNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGS  371 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~Gs  371 (419)
                      .-.+|.|+||.||++.-+ ++-..|.|++.. .......+|.-|+++|+.++||+||+|++.|.-++..|++.|||++|-
T Consensus        37 iGELGDGAFGKVyKA~nket~~lAAaKvIet-kseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~GGA  115 (1187)
T KOG0579|consen   37 IGELGDGAFGKVYKAVNKETKLLAAAKVIET-KSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGGGA  115 (1187)
T ss_pred             HhhhcCccchhhhhhhcccchhhhhhhhhcc-cchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCCch
Confidence            356899999999999965 455667888843 333445689999999999999999999999988999999999999999


Q ss_pred             hhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          372 VASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       372 L~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .+..+-.-.      ..+++.++.-+|.|++.||.|||+.   +||||
T Consensus       116 VDaimlEL~------r~LtE~QIqvvc~q~ldALn~LHs~---~iIHR  154 (1187)
T KOG0579|consen  116 VDAIMLELG------RVLTEDQIQVVCYQVLDALNWLHSQ---NIIHR  154 (1187)
T ss_pred             HhHHHHHhc------cccchHHHHHHHHHHHHHHHHHhhc---chhhh
Confidence            988765432      2688999999999999999999999   99998

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.52  E-value=5.2e-14  Score=134.06  Aligned_cols=120  Identities=22%  Similarity=0.318  Sum_probs=99.7

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      |+..+.||+|+||.||+|... ++..+|+|.+....  .....+++.+|+++++.++|+|++++.+++......++|+||
T Consensus        17 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   96 (308)
T cd06634          17 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEY   96 (308)
T ss_pred             HHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEEc
Confidence            555578999999999999964 68899999985321  122245688999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +. |++.+++.....      .+++.++..++.|++.|+.|||+.   +|+||
T Consensus        97 ~~-~~l~~~~~~~~~------~l~~~~~~~~~~~l~~~l~~LH~~---~i~H~  139 (308)
T cd06634          97 CL-GSASDLLEVHKK------PLQEVEIAAVTHGALQGLAYLHSH---NMIHR  139 (308)
T ss_pred             cC-CCHHHHHHHcCC------CCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            97 688887754321      467888899999999999999998   99997

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.52  E-value=8.3e-15  Score=129.85  Aligned_cols=123  Identities=17%  Similarity=0.218  Sum_probs=105.9

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccC-------HHHHHHHHHHHhcC-CCCCCcceeEEEecC
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGG-------ELQFQTEVEMISMA-VHRNLLRLRGFCMTP  357 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~-------~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  357 (419)
                      -+.|...+++|+|..++|.++.. ++|+.+|+|++........       .++-.+|+.+|+++ .||+|+++..+|..+
T Consensus        16 y~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~   95 (411)
T KOG0599|consen   16 YAKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESD   95 (411)
T ss_pred             HhhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCc
Confidence            34577788999999999999886 4788999999954322111       23567899999996 799999999999999


Q ss_pred             CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ...++|+|.|+.|.|+++|...-       .+++....++++|+..|++|||..   .||||
T Consensus        96 sF~FlVFdl~prGELFDyLts~V-------tlSEK~tR~iMrqlfegVeylHa~---~IVHR  147 (411)
T KOG0599|consen   96 AFVFLVFDLMPRGELFDYLTSKV-------TLSEKETRRIMRQLFEGVEYLHAR---NIVHR  147 (411)
T ss_pred             chhhhhhhhcccchHHHHhhhhe-------eecHHHHHHHHHHHHHHHHHHHHh---hhhhc
Confidence            99999999999999999998765       689999999999999999999999   99998

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.52  E-value=4.7e-14  Score=129.68  Aligned_cols=114  Identities=25%  Similarity=0.265  Sum_probs=99.5

Q ss_pred             eCcCCceEEEEEEeC-CCCEEEEEEccccccc--cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCCh
Q 014778          296 LGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSV  372 (419)
Q Consensus       296 lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~GsL  372 (419)
                      ||+|+||.||++... +++.+|+|.++.....  .....+..|++++++++|+|++++++.+..++..++||||+++++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            699999999999975 5889999998643321  2345789999999999999999999999999999999999999999


Q ss_pred             hhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          373 ASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       373 ~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .+++....       .+++.+...++.|+++|+.|||+.   +++|+
T Consensus        81 ~~~l~~~~-------~l~~~~~~~~~~qi~~~l~~lh~~---~~~H~  117 (250)
T cd05123          81 FSHLSKEG-------RFSEERARFYAAEIVLALEYLHSL---GIIYR  117 (250)
T ss_pred             HHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Cceec
Confidence            99998654       478888899999999999999988   89996

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.52  E-value=4.5e-14  Score=135.72  Aligned_cols=119  Identities=14%  Similarity=0.247  Sum_probs=102.3

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC-----ceeE
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT-----ERLL  362 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-----~~~l  362 (419)
                      |...+.||+|+||.||+|... +++.||+|++..... ....+.+.+|+++++.++|+||+++.+++...+     ..++
T Consensus         2 y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~l   81 (330)
T cd07834           2 YELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYI   81 (330)
T ss_pred             ceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceEE
Confidence            566789999999999999975 589999999864322 333567999999999999999999999998875     7899


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||++ ++|.++++...       .+++..+..++.|++.||+|||+.   +|+||
T Consensus        82 v~e~~~-~~l~~~l~~~~-------~l~~~~~~~i~~~l~~~l~~LH~~---gi~H~  127 (330)
T cd07834          82 VTELME-TDLHKVIKSPQ-------PLTDDHIQYFLYQILRGLKYLHSA---NVIHR  127 (330)
T ss_pred             Eecchh-hhHHHHHhCCC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            999998 48999887653       588888999999999999999999   99997

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.52  E-value=8.7e-14  Score=130.65  Aligned_cols=121  Identities=21%  Similarity=0.369  Sum_probs=98.0

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc-cCHHHHHHHHHHHhcC---CCCCCcceeEEEecCCc-----
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ-GGELQFQTEVEMISMA---VHRNLLRLRGFCMTPTE-----  359 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~~~~-----  359 (419)
                      |+..+.||+|+||.||+|+.+ +++.||+|+++..... .....+.+|+.++.++   +|+|++++++++...+.     
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            455688999999999999986 5899999999643222 1234567788776655   69999999999988776     


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .+++|||+++ +|.+++.....     ..+++.++..++.|+++||+|||+.   +|+||
T Consensus        81 ~~l~~e~~~~-~l~~~l~~~~~-----~~l~~~~~~~~~~~i~~al~~LH~~---~i~h~  131 (287)
T cd07838          81 LTLVFEHVDQ-DLATYLSKCPK-----PGLPPETIKDLMRQLLRGVDFLHSH---RIVHR  131 (287)
T ss_pred             eEEEehhccc-CHHHHHHHccC-----CCCCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            8999999974 89998876431     1578899999999999999999998   89996

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>PTZ00284 protein kinase; Provisional

Probab=99.51  E-value=3.7e-14  Score=143.04  Aligned_cols=125  Identities=17%  Similarity=0.212  Sum_probs=97.8

Q ss_pred             HHHHHhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCC------CCCcceeEEE
Q 014778          282 ELQVATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVH------RNLLRLRGFC  354 (419)
Q Consensus       282 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H------~niv~l~g~~  354 (419)
                      ++...+++|...+.||+|+||+||+|.. .+++.||||+++...  ...+++..|+.++..++|      .+++++++++
T Consensus       123 ~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~--~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~  200 (467)
T PTZ00284        123 DIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP--KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYF  200 (467)
T ss_pred             ccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch--hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEE
Confidence            4445567899999999999999999996 468899999995321  123345667777666654      4588898888


Q ss_pred             ecC-CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhh-ccccceecC
Q 014778          355 MTP-TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKY-SCVSILLFC  419 (419)
Q Consensus       355 ~~~-~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~-~~~p~IiHR  419 (419)
                      ... ...++|||++ +++|.+++....       .+++..+..++.||+.||+|||+ .   +||||
T Consensus       201 ~~~~~~~~iv~~~~-g~~l~~~l~~~~-------~l~~~~~~~i~~qi~~aL~yLH~~~---gIiHr  256 (467)
T PTZ00284        201 QNETGHMCIVMPKY-GPCLLDWIMKHG-------PFSHRHLAQIIFQTGVALDYFHTEL---HLMHT  256 (467)
T ss_pred             EcCCceEEEEEecc-CCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHhcC---CeecC
Confidence            765 4678999988 678999887653       58888999999999999999996 4   89998

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.51  E-value=1.1e-13  Score=133.86  Aligned_cols=119  Identities=17%  Similarity=0.252  Sum_probs=97.6

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC------c
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT------E  359 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------~  359 (419)
                      +.|...+.||+|+||.||+|.. .+|+.||||++.... .......+.+|+.+++.++|+||+++++++....      .
T Consensus        15 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   94 (342)
T cd07879          15 ERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLDVFTSAVSGDEFQD   94 (342)
T ss_pred             cceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhheecccccCCCCce
Confidence            5788889999999999999996 478999999985432 1222456889999999999999999999987543      4


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++|+||+.. +|.++...         .+++..+..++.|++.||+|||+.   +|+||
T Consensus        95 ~~lv~e~~~~-~l~~~~~~---------~~~~~~~~~~~~qi~~aL~~LH~~---~i~H~  141 (342)
T cd07879          95 FYLVMPYMQT-DLQKIMGH---------PLSEDKVQYLVYQMLCGLKYIHSA---GIIHR  141 (342)
T ss_pred             EEEEeccccc-CHHHHHcC---------CCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            5899999975 77766532         467788888999999999999999   89997

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.51  E-value=5.7e-14  Score=123.85  Aligned_cols=114  Identities=17%  Similarity=0.132  Sum_probs=85.0

Q ss_pred             CeeCcCCceEEEEEEeCCCCEEEEEEcccccccc-C-------HHHH-----------------HHHHHHHhcCCCCCCc
Q 014778          294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQG-G-------ELQF-----------------QTEVEMISMAVHRNLL  348 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~-~-------~~~f-----------------~~E~~~l~~l~H~niv  348 (419)
                      ..||+|+||.||+|..++|+.||||+++...... .       ...|                 .+|.+.+.++.|+++.
T Consensus         3 ~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v~   82 (190)
T cd05147           3 GCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGIP   82 (190)
T ss_pred             CccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            6799999999999998889999999996432110 1       1122                 3499999999888875


Q ss_pred             ceeEEEecCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHh-hhccccceecC
Q 014778          349 RLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFA-KYSCVSILLFC  419 (419)
Q Consensus       349 ~l~g~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yL-H~~~~p~IiHR  419 (419)
                      ....+..  ...++||||++++++........       .++..++..++.|++.+|+|+ |+.   +|+||
T Consensus        83 ~p~~~~~--~~~~iVmE~i~g~~l~~~~~~~~-------~~~~~~~~~i~~qi~~~L~~l~H~~---giiHr  142 (190)
T cd05147          83 CPEPILL--KSHVLVMEFIGDDGWAAPRLKDA-------PLSESKARELYLQVIQIMRILYQDC---RLVHA  142 (190)
T ss_pred             CCcEEEe--cCCEEEEEEeCCCCCcchhhhcC-------CCCHHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            5444332  23489999999987765432221       467788999999999999999 677   89998

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.51  E-value=8.7e-14  Score=132.30  Aligned_cols=123  Identities=20%  Similarity=0.363  Sum_probs=100.6

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc-cCHHHHHHHHHHHhcCCCCCCcceeEEEecCC------
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTPT------  358 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------  358 (419)
                      .++|...+.||+|+||.||+|... +++.+|||++...... .....+.+|++++.+++|+||+++++++....      
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            467888899999999999999964 6889999998543222 22346789999999999999999999876543      


Q ss_pred             --ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 --ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 --~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                        ..++|+||++. ++.+.+.....      .+++..+..++.|+++||+|||+.   +|+||
T Consensus        87 ~~~~~lv~~~~~~-~l~~~~~~~~~------~~~~~~~~~i~~~l~~al~~lH~~---~i~H~  139 (311)
T cd07866          87 RGSVYMVTPYMDH-DLSGLLENPSV------KLTESQIKCYMLQLLEGINYLHEN---HILHR  139 (311)
T ss_pred             CceEEEEEecCCc-CHHHHHhcccc------CCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence              35899999985 77777765321      588899999999999999999998   99997

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.51  E-value=8.9e-14  Score=130.29  Aligned_cols=120  Identities=22%  Similarity=0.347  Sum_probs=102.1

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc-cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      |...+.||+|++|.||++... +++.+|+|+++..... .....+.+|+.++++++|+|++++++++..++..++|+||+
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   80 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM   80 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEecc
Confidence            345678999999999999974 6889999998643322 23467889999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++ ++.+++.....      .+++.++..++.|++.|+.|||+.   +|+||
T Consensus        81 ~~-~l~~~l~~~~~------~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~  122 (283)
T cd05118          81 DT-DLYKLIKDRQR------GLPESLIKSYLYQLLQGLAFCHSH---GILHR  122 (283)
T ss_pred             CC-CHHHHHHhhcc------cCCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            85 89888876431      578889999999999999999998   99997

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.50  E-value=6.1e-14  Score=132.02  Aligned_cols=126  Identities=14%  Similarity=0.261  Sum_probs=97.9

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCC-CCCCcceeEEEecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-HRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +|...+.||+|+||.||++... +++.||+|.+...........+.+|+.++.++. |+||+++++++..++..++++||
T Consensus         5 ~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~   84 (288)
T cd06616           5 DLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMEL   84 (288)
T ss_pred             HhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEec
Confidence            3444578999999999999964 689999999864433334567899999999996 99999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++. ++.++......  .....+++..+..++.|+++||+|||+.+  +|+||
T Consensus        85 ~~~-~l~~l~~~~~~--~~~~~l~~~~~~~i~~~i~~~l~~lh~~~--~i~H~  132 (288)
T cd06616          85 MDI-SLDKFYKYVYE--VLKSVIPEEILGKIAVATVKALNYLKEEL--KIIHR  132 (288)
T ss_pred             ccC-CHHHHHHHHHH--hhcCCCCHHHHHHHHHHHHHHHHHHhhcC--Ceecc
Confidence            874 65554321100  00125788889999999999999999632  79997

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.50  E-value=8.8e-14  Score=140.66  Aligned_cols=132  Identities=23%  Similarity=0.368  Sum_probs=110.9

Q ss_pred             ccHHHHHHHhhCCCCCCeeCcCCceEEEEEE-eCCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEe
Q 014778          278 FSLRELQVATDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCM  355 (419)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~  355 (419)
                      ..++.+..+++-|...++||.|.+|.||+++ .++|+.+|||++....+  ..++...|.+++... .|||++.++|++.
T Consensus         9 ~~~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d--~deEiE~eynil~~~~~hpnv~~fyg~~~   86 (953)
T KOG0587|consen    9 IDLSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTED--EEEEIELEYNMLKKYSHHPNVATFYGAFI   86 (953)
T ss_pred             cchhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCcc--ccHHHHHHHHHHHhccCCCCcceEEEEEE
Confidence            3445556677788888999999999999999 46899999999865433  345677788887765 7999999999986


Q ss_pred             c-----CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          356 T-----PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       356 ~-----~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      -     +++.|||||||.+||.-++++...     +.++.|.-..-|+..++.|+.+||.+   .+|||
T Consensus        87 k~~~~~~DqLWLVMEfC~gGSVTDLVKn~~-----g~rl~E~~IaYI~re~lrgl~HLH~n---kviHR  147 (953)
T KOG0587|consen   87 KKDPGNGDQLWLVMEFCGGGSVTDLVKNTK-----GNRLKEEWIAYILREILRGLAHLHNN---KVIHR  147 (953)
T ss_pred             EecCCCCCeEEEEeeccCCccHHHHHhhhc-----ccchhhHHHHHHHHHHHHHHHHHhhc---ceeee
Confidence            5     578999999999999999998765     33788988999999999999999999   99998

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.49  E-value=2.8e-13  Score=122.09  Aligned_cols=121  Identities=27%  Similarity=0.387  Sum_probs=103.8

Q ss_pred             CCCCCeeCcCCceEEEEEEeCC-CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCC
Q 014778          290 FSNRNILGRGGFGKVYKGRLTD-GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMV  368 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~  368 (419)
                      |...+.||+|++|.||++...+ ++.+|+|.+.........+.+.+|++.+.+++|+|++++++++...+..++++||++
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCE   80 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccC
Confidence            3456789999999999999864 889999999644322245689999999999999999999999999999999999999


Q ss_pred             CCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          369 NGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       369 ~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|.+++.....      .+++.+...++.|++.++.|||+.   +++|+
T Consensus        81 ~~~L~~~~~~~~~------~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~  122 (225)
T smart00221       81 GGDLFDYLRKKGG------KLSEEEARFYLRQILEALEYLHSL---GIVHR  122 (225)
T ss_pred             CCCHHHHHHhccc------CCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            9999999986541      167888899999999999999988   89986

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.49  E-value=2e-13  Score=132.57  Aligned_cols=120  Identities=14%  Similarity=0.191  Sum_probs=98.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecC------C
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP------T  358 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~  358 (419)
                      .+.|...+.||+|+||.||++.. .+|+.||+|.+.... .......+.+|+.++.+++|+|++++++++...      .
T Consensus        15 ~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   94 (353)
T cd07850          15 LKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEFQ   94 (353)
T ss_pred             hcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCccccC
Confidence            46788889999999999999996 478999999985322 222345678899999999999999999988654      2


Q ss_pred             ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 ~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..++|+||++ |+|.+.+..         .+++.++..++.|++.||+|||+.   +|+||
T Consensus        95 ~~~lv~e~~~-~~l~~~~~~---------~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~  142 (353)
T cd07850          95 DVYLVMELMD-ANLCQVIQM---------DLDHERMSYLLYQMLCGIKHLHSA---GIIHR  142 (353)
T ss_pred             cEEEEEeccC-CCHHHHHhh---------cCCHHHHHHHHHHHHHHHHHHHhC---CeeeC
Confidence            4689999996 488887754         256677788999999999999998   99997

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.49  E-value=1.3e-14  Score=151.80  Aligned_cols=122  Identities=23%  Similarity=0.325  Sum_probs=104.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEE-eCCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      -.++....||.|.||.||-|. ..+|...|||.++... .....+...+|+.++..++|||+|+++|+-...+..+|.||
T Consensus      1235 ~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IFME 1314 (1509)
T KOG4645|consen 1235 FRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIFME 1314 (1509)
T ss_pred             eeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHHHH
Confidence            345667889999999999999 5689999999986322 23334578899999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||++|+|.+.+...+       ..++.....+..|++.|+.|||++   +||||
T Consensus      1315 yC~~GsLa~ll~~gr-------i~dE~vt~vyt~qll~gla~LH~~---gIVHR 1358 (1509)
T KOG4645|consen 1315 YCEGGSLASLLEHGR-------IEDEMVTRVYTKQLLEGLAYLHEH---GIVHR 1358 (1509)
T ss_pred             HhccCcHHHHHHhcc-------hhhhhHHHHHHHHHHHHHHHHHhc---Cceec
Confidence            999999999998765       455555667899999999999999   99998

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.48  E-value=1.8e-14  Score=135.32  Aligned_cols=121  Identities=18%  Similarity=0.244  Sum_probs=99.6

Q ss_pred             CCCCCeeCcCCceEEEEEE-eCCCCEEEEEEccccccccC------HHHHHHHHHHHhcCCCCCCcceeEEEecC-Ccee
Q 014778          290 FSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGG------ELQFQTEVEMISMAVHRNLLRLRGFCMTP-TERL  361 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~------~~~f~~E~~~l~~l~H~niv~l~g~~~~~-~~~~  361 (419)
                      |-..+.+|+|+|..|||+. +...+.||||.-.-.....+      .+...+|-++-+.++||.||+++.|+.-+ +..+
T Consensus       465 YLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFC  544 (775)
T KOG1151|consen  465 YLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFC  544 (775)
T ss_pred             HHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccce
Confidence            3344679999999999999 45678899997532211111      23457888999999999999999998764 5678


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceec
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLF  418 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiH  418 (419)
                      -|+|||++.+|+-||+..+       .+++.++..|+.||+.||.||. ..+|||||
T Consensus       545 TVLEYceGNDLDFYLKQhk-------lmSEKEARSIiMQiVnAL~YLN-EikpPIIH  593 (775)
T KOG1151|consen  545 TVLEYCEGNDLDFYLKQHK-------LMSEKEARSIIMQIVNALKYLN-EIKPPIIH  593 (775)
T ss_pred             eeeeecCCCchhHHHHhhh-------hhhHHHHHHHHHHHHHHHHHHh-ccCCCeee
Confidence            9999999999999999876       6899999999999999999999 56899999

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.47  E-value=3.2e-13  Score=130.06  Aligned_cols=119  Identities=18%  Similarity=0.232  Sum_probs=96.9

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-C--CCEEEEEEccccccc-cCHHHHHHHHHHHhcC-CCCCCcceeEEEecC----Cce
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-D--GSLVAVKRLKEERTQ-GGELQFQTEVEMISMA-VHRNLLRLRGFCMTP----TER  360 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~--g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~----~~~  360 (419)
                      |...+.||+|+||.||++... +  +..||+|++...... ...+.+.+|++++.++ .||||+++++++...    ...
T Consensus         2 y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~   81 (332)
T cd07857           2 YELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNEL   81 (332)
T ss_pred             ceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcE
Confidence            566788999999999999964 4  789999998643222 2245788999999999 599999999876433    346


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++++||++ ++|.+++....       .+++..+..++.||+.||+|||+.   +|+||
T Consensus        82 ~~~~e~~~-~~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---givH~  129 (332)
T cd07857          82 YLYEELME-ADLHQIIRSGQ-------PLTDAHFQSFIYQILCGLKYIHSA---NVLHR  129 (332)
T ss_pred             EEEEeccc-CCHHHHHhcCC-------CCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            88899987 58999987543       578889999999999999999998   99997

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.47  E-value=1.4e-13  Score=133.24  Aligned_cols=121  Identities=18%  Similarity=0.260  Sum_probs=101.4

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc-----
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE-----  359 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~-----  359 (419)
                      .++|.....||+|+||.||+|... +++.||||++.... .....+.+.+|+.++++++|+|++++.+++...+.     
T Consensus        14 ~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   93 (343)
T cd07851          14 PDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDFQ   93 (343)
T ss_pred             cCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccccc
Confidence            456888899999999999999974 68899999985432 12234567889999999999999999998876654     


Q ss_pred             -eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 -RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 -~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                       .++|+||+ +++|.+++...        .+++.++..++.|+++|++|||+.   +|+||
T Consensus        94 ~~~lv~e~~-~~~L~~~~~~~--------~l~~~~~~~~~~ql~~aL~~LH~~---gi~H~  142 (343)
T cd07851          94 DVYLVTHLM-GADLNNIVKCQ--------KLSDDHIQFLVYQILRGLKYIHSA---GIIHR  142 (343)
T ss_pred             cEEEEEecC-CCCHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence             89999999 56999988753        578889999999999999999998   99997

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.45  E-value=3.1e-14  Score=129.08  Aligned_cols=122  Identities=23%  Similarity=0.256  Sum_probs=104.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|+..+++|+|.||+|..++- .+|+.+|+|.++.+--  ......-..|-++|...+||.+..|...+...+..+.||
T Consensus       168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFVM  247 (516)
T KOG0690|consen  168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFVM  247 (516)
T ss_pred             chhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEEE
Confidence            5677789999999999999985 4799999999965432  112233567889999999999999998899999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||..+|.|.-+|.+.+       .+++.....+..+|+.||.|||++   +||.|
T Consensus       248 eyanGGeLf~HLsrer-------~FsE~RtRFYGaEIvsAL~YLHs~---~ivYR  292 (516)
T KOG0690|consen  248 EYANGGELFFHLSRER-------VFSEDRTRFYGAEIVSALGYLHSR---NIVYR  292 (516)
T ss_pred             EEccCceEeeehhhhh-------cccchhhhhhhHHHHHHhhhhhhC---Ceeee
Confidence            9999999999998876       677778888899999999999999   89876

>PRK10345 hypothetical protein; Provisional

Probab=99.45  E-value=7.8e-13  Score=117.93  Aligned_cols=114  Identities=16%  Similarity=0.219  Sum_probs=87.0

Q ss_pred             CCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcC-----CCCCCcceeEEEecCC---cee
Q 014778          290 FSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-----VHRNLLRLRGFCMTPT---ERL  361 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-----~H~niv~l~g~~~~~~---~~~  361 (419)
                      ++....||+|+||.||. .-.++.. +||++.... ....+++.+|+..+..+     .||||++++|++.++.   ..+
T Consensus         4 L~~~~~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~~-~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~   80 (210)
T PRK10345          4 LSEQSPLGTGRHRKCYA-HPEDAQR-CIKIVYHRG-DGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVY   80 (210)
T ss_pred             cCCcceecCCCceEEEE-CCCCcCe-EEEEEeccc-cchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEE
Confidence            45568999999999996 2234444 699885432 22456799999999999     6799999999998863   333


Q ss_pred             -EEecc--CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHH-HHhhhccccceecC
Q 014778          362 -LVYPF--MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSL-HFAKYSCVSILLFC  419 (419)
Q Consensus       362 -lv~e~--~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl-~yLH~~~~p~IiHR  419 (419)
                       +|+||  +++|+|.+++.+..        +++.  ..++.|++.++ +|||++   +||||
T Consensus        81 ~~I~e~~G~~~~tL~~~l~~~~--------~~e~--~~~~~~~L~~l~~yLh~~---~Ivhr  129 (210)
T PRK10345         81 DVIADFDGKPSITLTEFAEQCR--------YEED--VAQLRQLLKKLKRYLLDN---RIVTM  129 (210)
T ss_pred             EEEecCCCCcchhHHHHHHccc--------ccHh--HHHHHHHHHHHHHHHHHC---CEeec
Confidence             78999  66899999997532        3333  34578888888 999999   99998

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.45  E-value=2.2e-13  Score=138.38  Aligned_cols=127  Identities=13%  Similarity=0.157  Sum_probs=93.8

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCC--CCEEEEEEc--------------cc--cccccCHHHHHHHHHHHhcCCCCCCc
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTD--GSLVAVKRL--------------KE--ERTQGGELQFQTEVEMISMAVHRNLL  348 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~--g~~vAvK~l--------------~~--~~~~~~~~~f~~E~~~l~~l~H~niv  348 (419)
                      .++|...+.||+|+||+||++..+.  +..+++|.+              ..  .........+.+|+.+|.+++|+|||
T Consensus       147 ~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnIv  226 (501)
T PHA03210        147 LAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENIL  226 (501)
T ss_pred             hhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCcC
Confidence            4679999999999999999987632  222222211              00  00111234688999999999999999


Q ss_pred             ceeEEEecCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          349 RLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       349 ~l~g~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++++++...+..++|+|++. ++|.+++......  ........++..++.|++.||+|||+.   +||||
T Consensus       227 ~l~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~--~~~~~~~~~~~~i~~ql~~aL~yLH~~---gIiHr  291 (501)
T PHA03210        227 KIEEILRSEANTYMITQKYD-FDLYSFMYDEAFD--WKDRPLLKQTRAIMKQLLCAVEYIHDK---KLIHR  291 (501)
T ss_pred             cEeEEEEECCeeEEEEeccc-cCHHHHHhhcccc--ccccccHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            99999999999999999986 5788887654321  111233456778999999999999999   99998

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.45  E-value=1.2e-13  Score=133.73  Aligned_cols=122  Identities=14%  Similarity=0.129  Sum_probs=102.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc-------cCHHHHHHHHHHHhcCC---CCCCcceeEEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ-------GGELQFQTEVEMISMAV---HRNLLRLRGFCMT  356 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-------~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~  356 (419)
                      .+|+....+|+|+||.|+.|.++ +...|+||.+...+--       ..--..-.|+.+|+.++   |+||++++.++.+
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd  640 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED  640 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec
Confidence            45788899999999999999985 4568999998543211       00113457999999998   9999999999999


Q ss_pred             CCceeEEeccC-CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          357 PTERLLVYPFM-VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       357 ~~~~~lv~e~~-~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++..||++|-. ++-+|++++..++       .+++.++..|++||+.|+++||+.   +||||
T Consensus       641 dd~yyl~te~hg~gIDLFd~IE~kp-------~m~E~eAk~IFkQV~agi~hlh~~---~ivhr  694 (772)
T KOG1152|consen  641 DDYYYLETEVHGEGIDLFDFIEFKP-------RMDEPEAKLIFKQVVAGIKHLHDQ---GIVHR  694 (772)
T ss_pred             CCeeEEEecCCCCCcchhhhhhccC-------ccchHHHHHHHHHHHhcccccccc---Cceec
Confidence            99999999965 4459999999876       689999999999999999999999   99998

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.44  E-value=2e-13  Score=126.67  Aligned_cols=137  Identities=21%  Similarity=0.272  Sum_probs=111.9

Q ss_pred             HHHHHHHhhCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEE
Q 014778          280 LRELQVATDNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF  353 (419)
Q Consensus       280 ~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~  353 (419)
                      ..++....+.+....++-+|.||.||+|.++      +.+.|-||.++...++-....|..|...+..+.|||+.++.|+
T Consensus       276 ~~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V  355 (563)
T KOG1024|consen  276 LQELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGV  355 (563)
T ss_pred             HHhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEE
Confidence            3555666677888888999999999999764      3456778888766555556678999999999999999999999


Q ss_pred             EecC-CceeEEeccCCCCChhhhhcCCcc-ccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          354 CMTP-TERLLVYPFMVNGSVASCLRGMFI-VSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       354 ~~~~-~~~~lv~e~~~~GsL~~~L~~~~~-~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +.++ +..+.+|.++.-|+|..||.-.++ ....++.++-.+.+.++.|++.||+|||++   +|||.
T Consensus       356 ~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~---~ViHk  420 (563)
T KOG1024|consen  356 SIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNH---GVIHK  420 (563)
T ss_pred             EeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhc---Ccccc
Confidence            9875 557899999999999999984332 224455788889999999999999999999   99994

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.44  E-value=4.4e-13  Score=122.68  Aligned_cols=105  Identities=13%  Similarity=0.122  Sum_probs=90.0

Q ss_pred             CCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCChhhhhc
Q 014778          299 GGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR  377 (419)
Q Consensus       299 G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~GsL~~~L~  377 (419)
                      |.||.||++.. .+++.||+|+++...      .+.+|...+....|||++++++++.+.+..++||||+++|+|.+++.
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~   77 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS------EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHIS   77 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh------hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHH
Confidence            78999999996 478999999995432      34456666666789999999999999999999999999999999987


Q ss_pred             CCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          378 GMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ...       .+++.++..++.|++.||+|||+.   +|+||
T Consensus        78 ~~~-------~l~~~~~~~~~~ql~~~l~~lH~~---~i~H~  109 (237)
T cd05576          78 KFL-------NIPEECVKRWAAEMVVALDALHRE---GIVCR  109 (237)
T ss_pred             Hhc-------CCCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            643       478888999999999999999988   99997

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.43  E-value=1.8e-12  Score=114.93  Aligned_cols=115  Identities=24%  Similarity=0.368  Sum_probs=99.8

Q ss_pred             eCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCChhh
Q 014778          296 LGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVAS  374 (419)
Q Consensus       296 lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~GsL~~  374 (419)
                      ||+|.+|.||++... +++.+++|.+.........+.+.+|++.+..++|++++++++++......++++||+++++|.+
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~   80 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD   80 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence            689999999999975 4889999999644322134679999999999999999999999999999999999999999999


Q ss_pred             hhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          375 CLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       375 ~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++....      ..+++.++..++.+++++++|||+.   +++|+
T Consensus        81 ~~~~~~------~~~~~~~~~~~~~~l~~~l~~lh~~---~~~H~  116 (215)
T cd00180          81 LLKENE------GKLSEDEILRILLQILEGLEYLHSN---GIIHR  116 (215)
T ss_pred             HHHhcc------CCCCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            988652      1477888999999999999999998   99996

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.42  E-value=1.3e-12  Score=115.47  Aligned_cols=114  Identities=14%  Similarity=0.127  Sum_probs=86.2

Q ss_pred             CCeeCcCCceEEEEEEeCCCCEEEEEEccccccc--------------------cC-----HHHHHHHHHHHhcCCCCCC
Q 014778          293 RNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQ--------------------GG-----ELQFQTEVEMISMAVHRNL  347 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~--------------------~~-----~~~f~~E~~~l~~l~H~ni  347 (419)
                      ...||+|+||.||+|...+|+.||||.++.....                    ..     ...+.+|.+.+.+++|+++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3679999999999999878999999998643211                    00     1123578899999999998


Q ss_pred             cceeEEEecCCceeEEeccCCCCChhhh-hcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhh-ccccceecC
Q 014778          348 LRLRGFCMTPTERLLVYPFMVNGSVASC-LRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKY-SCVSILLFC  419 (419)
Q Consensus       348 v~l~g~~~~~~~~~lv~e~~~~GsL~~~-L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~-~~~p~IiHR  419 (419)
                      .....+...  ..++||||++++++... +...        .++..+...++.|++.++.|+|+ .   +|+||
T Consensus        82 ~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~~~--------~~~~~~~~~i~~~l~~~l~~lH~~~---givHr  142 (190)
T cd05145          82 PVPEPILLK--KNVLVMEFIGDDGSPAPRLKDV--------PLEEEEAEELYEQVVEQMRRLYQEA---GLVHG  142 (190)
T ss_pred             CCceEEEec--CCEEEEEEecCCCchhhhhhhc--------cCCHHHHHHHHHHHHHHHHHHHHhC---CEecC
Confidence            666555443  34899999998865433 3321        35567788999999999999999 8   99998

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.42  E-value=1.3e-13  Score=143.81  Aligned_cols=70  Identities=27%  Similarity=0.413  Sum_probs=57.8

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEE
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC  354 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~  354 (419)
                      +...+|...++||+|+||.|||++-+ ||+.||||++.-...........+|++++++++|||+|+++..+
T Consensus       476 RY~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAW  546 (1351)
T KOG1035|consen  476 RYLNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAW  546 (1351)
T ss_pred             hHhhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhh
Confidence            45567888899999999999999954 89999999996443333345688999999999999999987654

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.41  E-value=1.3e-13  Score=130.07  Aligned_cols=125  Identities=20%  Similarity=0.269  Sum_probs=107.6

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      -+.|..-++||+|+||.||-+..+ +|+.+|.|++....  ...++.--.+|-.+|.+++.+.||.+-..+.+.+..++|
T Consensus       184 ~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClV  263 (591)
T KOG0986|consen  184 KNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLV  263 (591)
T ss_pred             ccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEE
Confidence            356778899999999999999974 79999999995322  233455678899999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +..|.+|+|.-+|.....     ..+++..++.+|.+|+.||++||+.   +||.|
T Consensus       264 LtlMNGGDLkfHiyn~g~-----~gF~e~ra~FYAAEi~cGLehlH~~---~iVYR  311 (591)
T KOG0986|consen  264 LTLMNGGDLKFHIYNHGN-----PGFDEQRARFYAAEIICGLEHLHRR---RIVYR  311 (591)
T ss_pred             EEeecCCceeEEeeccCC-----CCCchHHHHHHHHHHHhhHHHHHhc---ceeec
Confidence            999999999999987653     2699999999999999999999998   88876

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.41  E-value=3.7e-14  Score=139.40  Aligned_cols=123  Identities=22%  Similarity=0.264  Sum_probs=106.7

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      +.++|.....+|.|.||.|||++. ..++..|||.++-.. ........+|+-+++.++|||||.++|.|...+..|+.|
T Consensus        13 P~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep-~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicM   91 (829)
T KOG0576|consen   13 PQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEP-GDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICM   91 (829)
T ss_pred             CccchhheeeecCCcccchhhhcccccCchhhheeeeccC-CccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEE
Confidence            456788889999999999999995 578999999996432 223445678999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||.+|+|.+.-+...       .+++.+..-++++..+|++|||+.   +-+||
T Consensus        92 EycgggslQdiy~~Tg-------plselqiayvcRetl~gl~ylhs~---gk~hR  136 (829)
T KOG0576|consen   92 EYCGGGSLQDIYHVTG-------PLSELQIAYVCRETLQGLKYLHSQ---GKIHR  136 (829)
T ss_pred             EecCCCcccceeeecc-------cchhHHHHHHHhhhhccchhhhcC---Ccccc
Confidence            9999999999877655       688888999999999999999999   77887

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.40  E-value=6.6e-13  Score=131.06  Aligned_cols=120  Identities=22%  Similarity=0.376  Sum_probs=102.7

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCC-C-----CCCcceeEEEecCCcee
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-H-----RNLLRLRGFCMTPTERL  361 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H-----~niv~l~g~~~~~~~~~  361 (419)
                      .|...++||+|.||.|.||.. .+++.||||+++....  -..+-..|+.+|..++ |     -|+|+++.|+.-.+..+
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~--f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hlc  264 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKR--FLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLC  264 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccChH--HHHHHHHHHHHHHHHhccCCCCCeeEEEeeecccccccee
Confidence            567789999999999999995 5799999999975432  2345677899999887 3     48999999999999999


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+|.+.. +|+++|+.+...     .++......|+.||+.||.+||+.   +|||+
T Consensus       265 iVfELL~~-NLYellK~n~f~-----Glsl~~ir~~~~Qil~~L~~L~~l---~IIHc  313 (586)
T KOG0667|consen  265 IVFELLST-NLYELLKNNKFR-----GLSLPLVRKFAQQILTALLFLHEL---GIIHC  313 (586)
T ss_pred             eeehhhhh-hHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHHHHHHhC---Ceeec
Confidence            99999987 999999976532     477788899999999999999999   99996

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.39  E-value=1.5e-13  Score=123.42  Aligned_cols=112  Identities=18%  Similarity=0.136  Sum_probs=95.2

Q ss_pred             CeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhc-CCCCCCcceeEEEec----CCceeEEeccC
Q 014778          294 NILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISM-AVHRNLLRLRGFCMT----PTERLLVYPFM  367 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~-l~H~niv~l~g~~~~----~~~~~lv~e~~  367 (419)
                      ++||-|-.|.|..+..+ +|+.+|+|.+...      ....+|+++--. -.|||||+++.+|..    ....++|||+|
T Consensus        68 qvLG~GinGkV~~C~~k~T~ekfALKvL~Ds------~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiVmE~m  141 (400)
T KOG0604|consen   68 QVLGAGINGKVVQCVHKRTQEKFALKVLLDS------PKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLIVMECM  141 (400)
T ss_pred             hhhccccCCceEEEEeccchhhhHHHHHhcC------HHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEeeeecc
Confidence            68999999999999964 7899999999532      345788886444 479999999998866    34568999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|++.+..++..     .+++.++..|+.||+.|+.|||+.   +|.||
T Consensus       142 eGGeLfsriq~~g~~-----afTErea~eI~~qI~~Av~~lH~~---nIAHR  185 (400)
T KOG0604|consen  142 EGGELFSRIQDRGDQ-----AFTEREASEIMKQIGLAVRYLHSM---NIAHR  185 (400)
T ss_pred             cchHHHHHHHHcccc-----cchHHHHHHHHHHHHHHHHHHHhc---chhhc
Confidence            999999999876532     699999999999999999999999   99998

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.39  E-value=1.6e-13  Score=142.16  Aligned_cols=129  Identities=17%  Similarity=0.230  Sum_probs=109.2

Q ss_pred             HHHHHHhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecC
Q 014778          281 RELQVATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP  357 (419)
Q Consensus       281 ~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~  357 (419)
                      .++....++|....+||+|+||.|...+.+ +++.||.|++....  ......-|..|-.+|..-+.+-||++...+.++
T Consensus        68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~  147 (1317)
T KOG0612|consen   68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDE  147 (1317)
T ss_pred             HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCc
Confidence            455556678999999999999999999974 68999999996432  122344688888999999999999999999999


Q ss_pred             CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .+.|+|||||+||+|-.++.+..       .+++.-+..++.+|+-||+-||+.   +.|||
T Consensus       148 ~~LYlVMdY~pGGDlltLlSk~~-------~~pE~~ArFY~aEiVlAldslH~m---gyVHR  199 (1317)
T KOG0612|consen  148 RYLYLVMDYMPGGDLLTLLSKFD-------RLPEDWARFYTAEIVLALDSLHSM---GYVHR  199 (1317)
T ss_pred             cceEEEEecccCchHHHHHhhcC-------CChHHHHHHHHHHHHHHHHHHHhc---cceec
Confidence            99999999999999999998764       477777788888999999999988   88887

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.38  E-value=2.7e-12  Score=116.70  Aligned_cols=110  Identities=22%  Similarity=0.304  Sum_probs=95.9

Q ss_pred             CceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCChhhhhcC
Q 014778          300 GFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRG  378 (419)
Q Consensus       300 ~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~GsL~~~L~~  378 (419)
                      +||.||+|... +|+.+|+|++.........+.+.+|++.+++++|+|++++.+++......++++||+++++|.+++..
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~   80 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK   80 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence            58999999975 58999999996543322257899999999999999999999999999999999999999999999876


Q ss_pred             CccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          379 MFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..       .+++..+..++.++++++.|||+.   +|+|+
T Consensus        81 ~~-------~~~~~~~~~~~~~l~~~l~~lh~~---~i~h~  111 (244)
T smart00220       81 RG-------RLSEDEARFYARQILSALEYLHSN---GIIHR  111 (244)
T ss_pred             cc-------CCCHHHHHHHHHHHHHHHHHHHHc---CeecC
Confidence            53       277788899999999999999998   99996

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.35  E-value=2.1e-14  Score=119.06  Aligned_cols=133  Identities=26%  Similarity=0.441  Sum_probs=117.6

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccC-CCCCcccCCCCCCCEEE
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLN-GPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~-g~~p~~~~~l~~L~~l~  147 (419)
                      .++..|++++|++. .+|.+++.++.|+.|+++-|.+. .+|..|+.++.|+.|||..|+++ ..+|..|..+..|+.|+
T Consensus        56 ~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly  133 (264)
T KOG0617|consen   56 KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY  133 (264)
T ss_pred             hhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence            35778899999998 58999999999999999999998 89999999999999999999995 46899999999999999


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCCCC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPP  204 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~~  204 (419)
                      |++|.|. .+|..++++++|+.|.+.+|.+-..+-..+.++.+..+.+.+|.+.-.|
T Consensus       134 l~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlp  189 (264)
T KOG0617|consen  134 LGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLP  189 (264)
T ss_pred             hcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence            9999997 8899999999999999999998765556788888899999999876543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.35  E-value=8.6e-14  Score=135.96  Aligned_cols=130  Identities=32%  Similarity=0.447  Sum_probs=96.9

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccC-------------------
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLN-------------------  130 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~-------------------  130 (419)
                      ....|+||+|+|.....+-+.+|+.|-+||||+|.+. .+|+.+..|.+|++|+||+|.+.                   
T Consensus       127 n~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms  205 (1255)
T KOG0444|consen  127 NSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS  205 (1255)
T ss_pred             CcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence            4566777777776433344567778888888888887 67888888888888888887543                   


Q ss_pred             ------CCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCC
Q 014778          131 ------GPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       131 ------g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~  201 (419)
                            ..+|.++..+.+|..+|||.|++. .+|+.+.++.+|+.|+||+|+++-.--..+.+.++.+++++.|++.
T Consensus       206 ~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt  281 (1255)
T KOG0444|consen  206 NTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT  281 (1255)
T ss_pred             cccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc
Confidence                  236777777788888888888887 7788888888888888888888765555566677778888888765

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.34  E-value=3.7e-14  Score=124.43  Aligned_cols=120  Identities=24%  Similarity=0.412  Sum_probs=98.4

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecC--------Cc
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP--------TE  359 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--------~~  359 (419)
                      |.....||+|.||.||+|+.. +|+.||+|++-.+. ..+-...-.+|+++|..++|+|++.++..|...        ..
T Consensus        19 yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t   98 (376)
T KOG0669|consen   19 YEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDRAT   98 (376)
T ss_pred             HHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcccccce
Confidence            444578999999999999964 68889998774322 222344678999999999999999999988652        34


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .|+|+++|+. +|.-.|.....      +++..++.+++.++..||.|+|++   .|+||
T Consensus        99 ~ylVf~~ceh-DLaGlLsn~~v------r~sls~Ikk~Mk~Lm~GL~~iHr~---kilHR  148 (376)
T KOG0669|consen   99 FYLVFDFCEH-DLAGLLSNRKV------RFSLSEIKKVMKGLMNGLYYIHRN---KILHR  148 (376)
T ss_pred             eeeeHHHhhh-hHHHHhcCccc------cccHHHHHHHHHHHHHHHHHHHHh---hHHhh
Confidence            7999999998 99998886542      678888899999999999999999   99998

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.33  E-value=4.1e-13  Score=116.37  Aligned_cols=116  Identities=16%  Similarity=0.342  Sum_probs=97.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEE-eCCCCEEEEEEccccccccCHHHHHHHHHHHhcCC-CCCCcceeEEEecCCc--eeE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-HRNLLRLRGFCMTPTE--RLL  362 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~--~~l  362 (419)
                      .++|+..+.+|+|.|+.|+.|. ..+.+.++||.+++-.    .+...+|+++|..++ ||||++|+....++..  ..|
T Consensus        37 ~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVk----kkKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaL  112 (338)
T KOG0668|consen   37 QDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVK----KKKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSL  112 (338)
T ss_pred             cchHHHHHHHcCccHhhHhcccccCCCceEEEeeechHH----HHHHHHHHHHHHhccCCCCeeehhhhhcCccccCchh
Confidence            3566777889999999999998 4677889999997542    457899999999997 9999999999988654  579


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+||+.|-+....-.          .++..+...++.|+++||.|.|++   +|+||
T Consensus       113 iFE~v~n~Dfk~ly~----------tl~d~dIryY~~elLkALdyCHS~---GImHR  156 (338)
T KOG0668|consen  113 IFEYVNNTDFKQLYP----------TLTDYDIRYYIYELLKALDYCHSM---GIMHR  156 (338)
T ss_pred             HhhhhccccHHHHhh----------hhchhhHHHHHHHHHHHHhHHHhc---Ccccc
Confidence            999999977665433          466677888999999999999999   99998

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.32  E-value=1e-11  Score=111.49  Aligned_cols=111  Identities=11%  Similarity=0.136  Sum_probs=91.2

Q ss_pred             CeeCcCCceEEEEEEeCCCCEEEEEEcccccccc-------CHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQG-------GELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~-------~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +.||+|++|.||+|.. +|..|+||.........       ....+.+|++++..++|+++.....++...+..++||||
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   80 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY   80 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence            5789999999999987 57789999864322111       123578899999999999999888888888888999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++++|.+++....          . .+..++.+++.+|.++|+.   +|+||
T Consensus        81 ~~G~~L~~~~~~~~----------~-~~~~i~~~i~~~l~~lH~~---~i~H~  119 (211)
T PRK14879         81 IEGEPLKDLINSNG----------M-EELELSREIGRLVGKLHSA---GIIHG  119 (211)
T ss_pred             eCCcCHHHHHHhcc----------H-HHHHHHHHHHHHHHHHHhC---CcccC
Confidence            99999999886432          1 6677899999999999998   99997

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.28  E-value=1.7e-11  Score=109.08  Aligned_cols=107  Identities=9%  Similarity=0.132  Sum_probs=85.9

Q ss_pred             eeCcCCceEEEEEEeCCCCEEEEEEcccccccc-------CHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          295 ILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQG-------GELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       295 ~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~-------~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      .||+|+||.||+|.+ +|..|++|.........       ....+.+|++++..++|+++.....++...+..++||||+
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   79 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI   79 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence            489999999999996 57889999864322111       1245788999999999998877777777777789999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++++|.+++....        .      .++.|++++|.+||+.   +|+||
T Consensus        80 ~g~~l~~~~~~~~--------~------~~~~~i~~~l~~lH~~---gi~H~  114 (199)
T TIGR03724        80 EGKPLKDVIEEGN--------D------ELLREIGRLVGKLHKA---GIVHG  114 (199)
T ss_pred             CCccHHHHHhhcH--------H------HHHHHHHHHHHHHHHC---CeecC
Confidence            9999998876432        1      5789999999999998   99997

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.28  E-value=6.6e-13  Score=123.75  Aligned_cols=117  Identities=31%  Similarity=0.476  Sum_probs=98.8

Q ss_pred             ccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCc
Q 014778           83 GQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLT  162 (419)
Q Consensus        83 g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~  162 (419)
                      +-+|..++.+++|..|+|++|.+. .+|.+++.+..|+.||+|+|+|. .+|..+-.+..|+++-.++|++...-|+.+.
T Consensus       425 sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~  502 (565)
T KOG0472|consen  425 SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLK  502 (565)
T ss_pred             ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhh
Confidence            456777888888888999888887 78888888888999999999887 7888777777777777777888755555599


Q ss_pred             CCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCC
Q 014778          163 NVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       163 ~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~  201 (419)
                      ++.+|+.||+.+|.+...+|..+.+++++++.+.||++.
T Consensus       503 nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  503 NMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            999999999999999988888899999999999999886

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.27  E-value=2.2e-11  Score=124.66  Aligned_cols=114  Identities=11%  Similarity=0.122  Sum_probs=89.0

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEc-cccccc------cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRL-KEERTQ------GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE  359 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l-~~~~~~------~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  359 (419)
                      ...|...+.||+|+||.||+|.+.+.. +++|+. ......      ...+.+.+|++++..++|++++....++...+.
T Consensus       332 ~~~~~~~~~iG~G~~g~Vy~~~~~~~~-~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~  410 (535)
T PRK09605        332 KRRKIPDHLIGKGAEADIKKGEYLGRD-AVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEE  410 (535)
T ss_pred             ccccCccceeccCCcEEEEEEeecCcc-ceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCC
Confidence            344566789999999999999985443 444432 111110      113468899999999999999998888888888


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++||||+++++|.+++.               ....++.|++++|.|||+.   +|+||
T Consensus       411 ~~lv~E~~~g~~L~~~l~---------------~~~~~~~~i~~~L~~lH~~---giiHr  452 (535)
T PRK09605        411 KTIVMEYIGGKDLKDVLE---------------GNPELVRKVGEIVAKLHKA---GIVHG  452 (535)
T ss_pred             CEEEEEecCCCcHHHHHH---------------HHHHHHHHHHHHHHHHHhC---CCccC
Confidence            899999999999998875               2345789999999999998   99998

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.25  E-value=3.1e-13  Score=125.93  Aligned_cols=123  Identities=29%  Similarity=0.394  Sum_probs=98.2

Q ss_pred             EEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccC-CCCCCCEEEcccC
Q 014778           73 RVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLG-KLSKLRFLRLNNN  151 (419)
Q Consensus        73 ~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~-~l~~L~~l~l~~N  151 (419)
                      .||...|-+ +++|++++.+.+|..|||..|.+. .+| +|+++..|..|+++.|++. .+|.+.. ++++|.+|||..|
T Consensus       187 ~ld~~~N~L-~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdN  262 (565)
T KOG0472|consen  187 HLDCNSNLL-ETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDN  262 (565)
T ss_pred             hcccchhhh-hcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccc
Confidence            344444333 467777787888888888888777 666 7778888888888888876 7787776 8899999999999


Q ss_pred             cCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCC
Q 014778          152 SLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       152 ~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~  201 (419)
                      +++ +.|+.+.-+.+|..||+|+|.+++.++..+.+ .+..+.+.||++.
T Consensus       263 klk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  263 KLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             ccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchH
Confidence            998 88999999999999999999999988888877 7778888888764

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.25  E-value=7.1e-12  Score=122.81  Aligned_cols=122  Identities=18%  Similarity=0.219  Sum_probs=104.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEE-eCCCCEEEEEEccccccc--cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ..|...+.||-|+||+|..+. .++...+|.|.++.....  ........|-.+|+..+.+-||+|+..+.+.+.+|+||
T Consensus       629 SmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFVM  708 (1034)
T KOG0608|consen  629 SMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVM  708 (1034)
T ss_pred             cceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEEE
Confidence            357777889999999999987 456778999999644321  12234677889999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|++-.+|.+.+       .|.+..+..++.++..|++|.|..   +.|||
T Consensus       709 dYIPGGDmMSLLIrmg-------IFeE~LARFYIAEltcAiesVHkm---GFIHR  753 (1034)
T KOG0608|consen  709 DYIPGGDMMSLLIRMG-------IFEEDLARFYIAELTCAIESVHKM---GFIHR  753 (1034)
T ss_pred             eccCCccHHHHHHHhc-------cCHHHHHHHHHHHHHHHHHHHHhc---cceec
Confidence            9999999999998876       688888889999999999999999   99998

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.24  E-value=5.4e-11  Score=112.53  Aligned_cols=121  Identities=12%  Similarity=0.165  Sum_probs=84.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCC----CCEEEEEEccccccccC----------HHHHHHHHHHHhcCCCCCCcceeEE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTD----GSLVAVKRLKEERTQGG----------ELQFQTEVEMISMAVHRNLLRLRGF  353 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~~~~~----------~~~f~~E~~~l~~l~H~niv~l~g~  353 (419)
                      +.|...+.||+|+||.||+|...+    +..+|+|..........          ......+...+..+.|+|+++++++
T Consensus        12 ~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~   91 (294)
T PHA02882         12 KEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYYGC   91 (294)
T ss_pred             CceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEEEe
Confidence            467778999999999999999753    34566665422111100          1122334455667899999999998


Q ss_pred             EecCC----ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          354 CMTPT----ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       354 ~~~~~----~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +....    ..++++|++.. ++.+.+....       ..++..+..++.|++.||+|||+.   +|+||
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~i~~qi~~~l~~lH~~---~iiHr  150 (294)
T PHA02882         92 GSFKRCRMYYRFILLEKLVE-NTKEIFKRIK-------CKNKKLIKNIMKDMLTTLEYIHEH---GISHG  150 (294)
T ss_pred             eeEecCCceEEEEEEehhcc-CHHHHHHhhc-------cCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            76643    34678887754 6666655432       245667788999999999999998   99998

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.24  E-value=6.5e-12  Score=107.44  Aligned_cols=131  Identities=18%  Similarity=0.265  Sum_probs=105.2

Q ss_pred             HHHHhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHH-hcCCCCCCcceeEEEecCCce
Q 014778          283 LQVATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMI-SMAVHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       283 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l-~~l~H~niv~l~g~~~~~~~~  360 (419)
                      ++.+.+++.....||+|+||.|-+-++ .+|+..|||+++..-..+..++...|+.+. +....|.+|+++|.+.+....
T Consensus        41 ~eV~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdv  120 (282)
T KOG0984|consen   41 FEVPADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDV  120 (282)
T ss_pred             cccchhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccE
Confidence            444555566667899999999988885 589999999997655555566788888864 456899999999999999999


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+.||.|.. ||+.+-+.--   +.+..+++...=+||..|.+||+|||++.  .||||
T Consensus       121 wIcME~M~t-Sldkfy~~v~---~~g~~ipE~vlGkIa~Svv~al~~L~~kL--~vIHR  173 (282)
T KOG0984|consen  121 WICMELMDT-SLDKFYRKVL---KKGGTIPEDVLGKIAVSVVHALEFLHSKL--SVIHR  173 (282)
T ss_pred             EEeHHHhhh-hHHHHHHHHH---hcCCcCchHHhhHhHHHHHHHHHHHHHHh--hhhhc
Confidence            999999987 8887765321   22336888888899999999999999886  69998

>smart00090 RIO RIO-like kinase

Probab=99.23  E-value=4.3e-11  Score=109.23  Aligned_cols=117  Identities=11%  Similarity=0.003  Sum_probs=85.1

Q ss_pred             CCCCCCeeCcCCceEEEEEE--eCCCCEEEEEEcccccccc-----------------------CHHHHHHHHHHHhcCC
Q 014778          289 NFSNRNILGRGGFGKVYKGR--LTDGSLVAVKRLKEERTQG-----------------------GELQFQTEVEMISMAV  343 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~--~~~g~~vAvK~l~~~~~~~-----------------------~~~~f~~E~~~l~~l~  343 (419)
                      .|...+.||+|+||.||+|.  ..+|+.||||.++......                       ....+.+|.+.+.++.
T Consensus        29 ~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~  108 (237)
T smart00090       29 LSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLY  108 (237)
T ss_pred             hHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            46667899999999999998  5689999999986432100                       0123568999999997


Q ss_pred             CCCC--cceeEEEecCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccc-eecC
Q 014778          344 HRNL--LRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSI-LLFC  419 (419)
Q Consensus       344 H~ni--v~l~g~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~-IiHR  419 (419)
                      +..+  .+.+++    ...++||||+++++|........       .....+...++.||+.+++|||+.   + |+||
T Consensus       109 ~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~~~-------~~~~~~~~~i~~qi~~~l~~LH~~---g~iiH~  173 (237)
T smart00090      109 EAGVPVPKPIAW----RRNVLVMEFIGGDGLPAPRLKDV-------EPEEEEEFELYDDILEEMRKLYKE---GELVHG  173 (237)
T ss_pred             hcCCCCCeeeEe----cCceEEEEEecCCcccccccccC-------CcchHHHHHHHHHHHHHHHHHHhc---CCEEeC
Confidence            6433  333332    23589999999988876543221       234455678999999999999999   8 9997

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.23  E-value=1.2e-12  Score=116.32  Aligned_cols=119  Identities=18%  Similarity=0.240  Sum_probs=95.1

Q ss_pred             CCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecC-----CceeE
Q 014778          290 FSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP-----TERLL  362 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~~~l  362 (419)
                      .+..+.||-|+||.||..+. ++|+.||.|++..-. .....+.+.+|+++|...+|.|++..+.....+     .+.|+
T Consensus        55 i~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV  134 (449)
T KOG0664|consen   55 IQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYV  134 (449)
T ss_pred             CCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHH
Confidence            34458899999999999996 479999999985321 122356789999999999999999998877664     35789


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|.|.. +|.+.+-...       .++..-..-+..||++||.|||+.   +|.||
T Consensus       135 ~TELmQS-DLHKIIVSPQ-------~Ls~DHvKVFlYQILRGLKYLHsA---~ILHR  180 (449)
T KOG0664|consen  135 LTELMQS-DLHKIIVSPQ-------ALTPDHVKVFVYQILRGLKYLHTA---NILHR  180 (449)
T ss_pred             HHHHHHh-hhhheeccCC-------CCCcchhhhhHHHHHhhhHHHhhc---chhhc
Confidence            9999975 8888776544       455555566789999999999999   99998

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.22  E-value=3.6e-11  Score=123.29  Aligned_cols=126  Identities=16%  Similarity=0.130  Sum_probs=83.3

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC-C----CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEE------E
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT-D----GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF------C  354 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~----g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~------~  354 (419)
                      ..++|...+.||+|+||.||+|++. +    +..||||++....   ..+.+..|  .+....+.+++.+...      +
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~---~~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~  204 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYG---AVEIWMNE--RVRRACPNSCADFVYGFLEPVSS  204 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccc---hhHHHHHH--HHHhhchhhHHHHHHhhhccccc
Confidence            4678889999999999999999974 5    7899999985321   11122222  1222222233222211      2


Q ss_pred             ecCCceeEEeccCCCCChhhhhcCCcccc-------------CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          355 MTPTERLLVYPFMVNGSVASCLRGMFIVS-------------GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       355 ~~~~~~~lv~e~~~~GsL~~~L~~~~~~~-------------~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ......++||||+++|+|.++++......             ..........+..++.|++.||+|||+.   +|+||
T Consensus       205 ~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~---gIiHR  279 (566)
T PLN03225        205 KKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHST---GIVHR  279 (566)
T ss_pred             ccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHC---CEEeC
Confidence            44567899999999999999987542100             0001122334567899999999999998   99998

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.22  E-value=2.7e-12  Score=114.02  Aligned_cols=112  Identities=21%  Similarity=0.325  Sum_probs=93.8

Q ss_pred             CeeCcCCceEEEEEEeCCCCEEEEEEcccc-ccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCCh
Q 014778          294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEE-RTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSV  372 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~-~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~GsL  372 (419)
                      ..|.+...|+.|+|++. |..+++|.+... ....-.++|..|.-.|+-+.||||..++|.|..+....++..|||.|||
T Consensus       196 tkl~e~hsgelwrgrwq-gndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gsl  274 (448)
T KOG0195|consen  196 TKLAESHSGELWRGRWQ-GNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGSL  274 (448)
T ss_pred             hhhccCCCccccccccc-CcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchHH
Confidence            45778888999999996 445666777432 2233356899999999999999999999999999999999999999999


Q ss_pred             hhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 014778          373 ASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYS  411 (419)
Q Consensus       373 ~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~  411 (419)
                      +..||...+.     .++-.++++++.+||+||+|||+-
T Consensus       275 ynvlhe~t~v-----vvd~sqav~faldiargmaflhsl  308 (448)
T KOG0195|consen  275 YNVLHEQTSV-----VVDHSQAVRFALDIARGMAFLHSL  308 (448)
T ss_pred             HHHHhcCccE-----EEecchHHHHHHHHHhhHHHHhhc
Confidence            9999987643     577788999999999999999964

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.21  E-value=8.1e-13  Score=128.38  Aligned_cols=112  Identities=27%  Similarity=0.246  Sum_probs=74.3

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN  149 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~  149 (419)
                      .+..|+|+.|+++..-...+.+|+.|+.|+||+|.|....++.+..+++|+.||||+|+++.--|.+|..|+.|+.|+|+
T Consensus       270 kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs  349 (873)
T KOG4194|consen  270 KMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLS  349 (873)
T ss_pred             ccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccc
Confidence            46778888888877666677788888888888888887777888888888888888888875445555555555555555


Q ss_pred             cCcCcccCCccCcCCCCCcEEEcccCcCCCCC
Q 014778          150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDI  181 (419)
Q Consensus       150 ~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~  181 (419)
                      +|.++-.--..|..+.+|++|||+.|.+++.|
T Consensus       350 ~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I  381 (873)
T KOG4194|consen  350 HNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI  381 (873)
T ss_pred             ccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence            55554333333444555555555555554443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.20  E-value=1e-12  Score=128.55  Aligned_cols=128  Identities=30%  Similarity=0.455  Sum_probs=88.2

Q ss_pred             EEEEEcCCCCccccchhhhhCCCCCCEEEcccCccc-ccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcc
Q 014778           71 VTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNIS-GKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN  149 (419)
Q Consensus        71 ~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~-g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~  149 (419)
                      +..|.+++|+|. .+..++..|+.|+.+++..|++. .-||+.+..|..|+.||||+|++. +.|..+..-+++-+|+||
T Consensus        57 LEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS  134 (1255)
T KOG0444|consen   57 LEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLS  134 (1255)
T ss_pred             hhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcc
Confidence            444555555554 23445555566666666666554 237777777777778888888777 777777777777778888


Q ss_pred             cCcCcccCCcc-CcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCC
Q 014778          150 NNSLMGEIPRS-LTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       150 ~N~l~g~~p~~-l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~  201 (419)
                      +|++. .||.. +-+|+.|-+||||+|++...+|....+..++++.+++|++.
T Consensus       135 ~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  135 YNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             cCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhh
Confidence            87776 56654 46777777788888888777777777777777777777654

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.17  E-value=5.8e-11  Score=113.41  Aligned_cols=121  Identities=12%  Similarity=0.196  Sum_probs=97.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCC-----C---CCCcceeEEEecC-
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-----H---RNLLRLRGFCMTP-  357 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-----H---~niv~l~g~~~~~-  357 (419)
                      ..|...+.||=|-|.+||.+.. .+.+.||+|+.+....  -.+.-..||++|++++     |   ..||+|+.++.-. 
T Consensus        78 gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqh--YtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsG  155 (590)
T KOG1290|consen   78 GRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQH--YTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSG  155 (590)
T ss_pred             ceEEEEEeccccccceeEEEeeccCCeEEEEEEEehhhH--HHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecC
Confidence            4577789999999999999995 5678999999864321  2346788999999874     2   3699999988663 


Q ss_pred             ---CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceec
Q 014778          358 ---TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLF  418 (419)
Q Consensus       358 ---~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiH  418 (419)
                         ...+||+|++-. +|..+|......     .++...+.+|+.||+.||.|||+.|  +|||
T Consensus       156 pNG~HVCMVfEvLGd-nLLklI~~s~Yr-----Glpl~~VK~I~~qvL~GLdYLH~ec--gIIH  211 (590)
T KOG1290|consen  156 PNGQHVCMVFEVLGD-NLLKLIKYSNYR-----GLPLSCVKEICRQVLTGLDYLHREC--GIIH  211 (590)
T ss_pred             CCCcEEEEEehhhhh-HHHHHHHHhCCC-----CCcHHHHHHHHHHHHHHHHHHHHhc--Cccc
Confidence               457999999954 899998865422     5777788999999999999999998  8998

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.16  E-value=4e-11  Score=121.20  Aligned_cols=119  Identities=23%  Similarity=0.210  Sum_probs=93.3

Q ss_pred             CCCCCCeeCcCCce-EEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFG-KVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg-~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      -|...+++|.|+-| .||+|.+. |+.||||++-..    ...-..+|+..|..- +|||||++++.-.++...||..|.
T Consensus       510 ~~~~~eilG~Gs~Gt~Vf~G~ye-~R~VAVKrll~e----~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalEL  584 (903)
T KOG1027|consen  510 FFSPKEILGYGSNGTVVFRGVYE-GREVAVKRLLEE----FFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALEL  584 (903)
T ss_pred             eeccHHHcccCCCCcEEEEEeeC-CceehHHHHhhH----hHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehH
Confidence            45666889999886 57999994 889999999432    223457899988887 699999998888888899999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |.- +|.+++............   .+.+.+..|+++|+++||+-   +||||
T Consensus       585 C~~-sL~dlie~~~~d~~~~~~---i~~~~~l~q~~~GlaHLHsl---~iVHR  630 (903)
T KOG1027|consen  585 CAC-SLQDLIESSGLDVEMQSD---IDPISVLSQIASGLAHLHSL---KIVHR  630 (903)
T ss_pred             hhh-hHHHHHhccccchhhccc---ccHHHHHHHHHHHHHHHHhc---ccccc
Confidence            976 999999875211111111   45677899999999999997   99998

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.15  E-value=2.8e-12  Score=113.63  Aligned_cols=122  Identities=16%  Similarity=0.233  Sum_probs=95.3

Q ss_pred             CCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHH-HhcCCCCCCcceeEEEecCCceeEEeccCCCC
Q 014778          293 RNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEM-ISMAVHRNLLRLRGFCMTPTERLLVYPFMVNG  370 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~-l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~G  370 (419)
                      ...||.|+||+|+|... +.|+..|||+++......+.+++..|.++ |+.-+-||||+++|.+..++..|+.||.|.- 
T Consensus        69 lg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd~-  147 (361)
T KOG1006|consen   69 LGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMDI-  147 (361)
T ss_pred             HHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHhh-
Confidence            36699999999999987 47999999999755544556788899875 5556889999999999999999999999976 


Q ss_pred             ChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          371 SVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       371 sL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |++.+-+.--.  .....+++.-.-.|+.-++.||+||-...  +||||
T Consensus       148 SlDklYk~vy~--vq~~~ipE~Ilg~ItvatV~AL~yLK~~l--kiIHR  192 (361)
T KOG1006|consen  148 SLDKLYKRVYS--VQKSRIPENILGHITVATVDALDYLKEEL--KIIHR  192 (361)
T ss_pred             hHHHHHHHHHH--HHhccCcHhhhhheeeeehhHHHHHHHHh--hhhhc
Confidence            77765542111  11125666666678888899999998765  68887

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.15  E-value=3.9e-10  Score=118.04  Aligned_cols=41  Identities=22%  Similarity=0.030  Sum_probs=30.1

Q ss_pred             HhhhccCChHHHHHHHHHHHhcCCCC---CCCCCCCCCCCCCCCc
Q 014778           19 DLLLRVASNAEGDALNALKTNLADPN---NVLQSWDATLVNPCTW   60 (419)
Q Consensus        19 ~~~~~~~~~~~~~~l~~~~~~~~~~~---~~l~~w~~~~~~~c~w   60 (419)
                      +.++....+.|...+.++.+.+..|.   ++-.+|++. .++|.-
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~-~~fc~~   97 (754)
T PRK15370         54 CHPPETASPEEIKSKFECLRMLAFPAYADNIQYSRGGA-DQYCIL   97 (754)
T ss_pred             hCCCCCCCHHHHHHHHHHHHHhcCCchhhccccccCCC-Cccccc
Confidence            44566777889999999999999885   233348865 588843

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.14  E-value=4.6e-11  Score=106.25  Aligned_cols=119  Identities=16%  Similarity=0.231  Sum_probs=94.8

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEE-EecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGF-CMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~-~~~~~~~~lv~  364 (419)
                      +.|...+.+|+|.||.+-.++.+ ..+.+++|.+....  ...++|.+|..-=-.+ .|.||+.-+.. +...+....++
T Consensus        24 d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~--tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~q  101 (378)
T KOG1345|consen   24 DVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQ--TTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQ  101 (378)
T ss_pred             hhhhHHHHhcccceeeEEeeeccCCceEEEeeccCcch--hhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEee
Confidence            34666789999999999999975 56789999985432  2356899998654444 58999987754 45567778999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+|.|||.+-+...        .+-+.....++.|+++|++|||+.   ++|||
T Consensus       102 E~aP~gdL~snv~~~--------GigE~~~K~v~~ql~SAi~fMHsk---nlVHR  145 (378)
T KOG1345|consen  102 EFAPRGDLRSNVEAA--------GIGEANTKKVFAQLLSAIEFMHSK---NLVHR  145 (378)
T ss_pred             ccCccchhhhhcCcc--------cccHHHHHHHHHHHHHHHHHhhcc---chhhc
Confidence            999999999877654        355666778999999999999999   99998

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.14  E-value=1.2e-11  Score=115.78  Aligned_cols=122  Identities=18%  Similarity=0.247  Sum_probs=101.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccccc--CHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQG--GELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~--~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  363 (419)
                      .+|....+||+|+||.|..+.-+ +.+.+|||+++.+--.+  ..+--+.|-++|+-- +-|.+|++..++.+.+..|.|
T Consensus       349 tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLyFV  428 (683)
T KOG0696|consen  349 TDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLYFV  428 (683)
T ss_pred             cccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhheeeE
Confidence            46888899999999999999865 46789999997543221  222346677777765 678999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+.+|+|--+++.-+       .+.+..++.+|.+||-||=+||++   +||.|
T Consensus       429 MEyvnGGDLMyhiQQ~G-------kFKEp~AvFYAaEiaigLFFLh~k---gIiYR  474 (683)
T KOG0696|consen  429 MEYVNGGDLMYHIQQVG-------KFKEPVAVFYAAEIAIGLFFLHSK---GIIYR  474 (683)
T ss_pred             EEEecCchhhhHHHHhc-------ccCCchhhhhhHHHHHHhhhhhcC---Ceeee
Confidence            99999999998888665       688888999999999999999999   99987

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.14  E-value=8.4e-11  Score=114.59  Aligned_cols=131  Identities=26%  Similarity=0.331  Sum_probs=97.9

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN  149 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~  149 (419)
                      ..+.||+++|.|+..-+..|.++++|+.++|.+|.++ .||.......+|+.|+|.+|.++..-.+++.-++.|+.||||
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            4677999999999988999999999999999999999 899877777778889988888876556667777788888888


Q ss_pred             cCcCcccCC-ccCcCCCCCcEEEcccCcCCCCCC-CCCCccccccccccCCCCCC
Q 014778          150 NNSLMGEIP-RSLTNVNSLQVLDLSNNKLTGDIP-TNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       150 ~N~l~g~~p-~~l~~l~~L~~l~l~~N~l~g~~p-~~~~~~~~~~~~~~~n~~~~  202 (419)
                      .|.++ ++| .+|..-.++++|+|++|+++..-- .+..++++..+.++.|.++.
T Consensus       158 rN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt  211 (873)
T KOG4194|consen  158 RNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT  211 (873)
T ss_pred             hchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc
Confidence            88777 444 345555667777777777764322 23444555666666666553

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.13  E-value=3.4e-11  Score=109.91  Aligned_cols=124  Identities=19%  Similarity=0.232  Sum_probs=103.5

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccC--HHHHHHHHHHHhcC-CCCCCcceeEEEecCCcee
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGG--ELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~--~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~  361 (419)
                      ...+|...++||+|+|++|..+++ ++.+.+|+|+++.+.....  .+-...|-.+..+. +||.+|-+..++.++...+
T Consensus       248 ~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlf  327 (593)
T KOG0695|consen  248 GLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLF  327 (593)
T ss_pred             ccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEE
Confidence            346788899999999999999996 4788999999975433222  23355666666654 7999999999999999999


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .|.||+++|+|--+.++++       .+++..+..+..+|+-||.|||++   +||.|
T Consensus       328 fvieyv~ggdlmfhmqrqr-------klpeeharfys~ei~lal~flh~r---giiyr  375 (593)
T KOG0695|consen  328 FVIEYVNGGDLMFHMQRQR-------KLPEEHARFYSAEICLALNFLHER---GIIYR  375 (593)
T ss_pred             EEEEEecCcceeeehhhhh-------cCcHHHhhhhhHHHHHHHHHHhhc---Ceeee
Confidence            9999999999988887766       688888888999999999999999   99976

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.11  E-value=3.2e-10  Score=101.79  Aligned_cols=114  Identities=9%  Similarity=0.010  Sum_probs=89.3

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccC--H------HHHHHHHHHHhcCCCCCCcceeEEEecC-
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGG--E------LQFQTEVEMISMAVHRNLLRLRGFCMTP-  357 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~--~------~~f~~E~~~l~~l~H~niv~l~g~~~~~-  357 (419)
                      .+.|...+++|+|+||.||.... ++..+|||.+++......  .      ..|.+|+..+.+++|++|..+..++... 
T Consensus        30 ~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~~  108 (232)
T PRK10359         30 SYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLAE  108 (232)
T ss_pred             hCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeecc
Confidence            56788899999999999999766 567899999965432211  1      1268999999999999999999886543 


Q ss_pred             -------CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 -------TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 -------~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                             ...++||||+++.+|.++..           ++.    ....+++.++..+|+.   +|+||
T Consensus       109 ~~~~~~~~~~~lvmEyi~G~tL~~~~~-----------~~~----~~~~~i~~~l~~lH~~---gi~H~  159 (232)
T PRK10359        109 RKTLRYAHTYIMLIEYIEGVELNDMPE-----------ISE----DVKAKIKASIESLHQH---GMVSG  159 (232)
T ss_pred             cccccccCCeEEEEEEECCccHHHhhh-----------ccH----HHHHHHHHHHHHHHHc---CCccC
Confidence                   35789999999999988732           111    2456999999999999   99997

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.09  E-value=1.6e-10  Score=112.08  Aligned_cols=121  Identities=14%  Similarity=0.199  Sum_probs=99.4

Q ss_pred             CCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccc-cccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKE-ERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~-~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      .|+..+.||+||...||++.-.+.+.+|+|++.. ..+.+....|.+|+..|.++ .|.+||+|+.|-..++..||||||
T Consensus       362 ~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE~  441 (677)
T KOG0596|consen  362 EYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVMEC  441 (677)
T ss_pred             hhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEeec
Confidence            4666788999999999999987778889888743 23344466899999999999 599999999999999999999997


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      =+- +|.++|+.....     ...| .+..+-.|++.++.++|.+   +|||.
T Consensus       442 Gd~-DL~kiL~k~~~~-----~~~~-~lk~ywkqML~aV~~IH~~---gIVHS  484 (677)
T KOG0596|consen  442 GDI-DLNKILKKKKSI-----DPDW-FLKFYWKQMLLAVKTIHQH---GIVHS  484 (677)
T ss_pred             ccc-cHHHHHHhccCC-----CchH-HHHHHHHHHHHHHHHHHHh---ceeec
Confidence            655 999999876532     1222 4566788999999999999   99993

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.09  E-value=1.6e-10  Score=108.62  Aligned_cols=119  Identities=18%  Similarity=0.312  Sum_probs=101.7

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEeC----CCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCc
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRLT----DGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTE  359 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~  359 (419)
                      ...+.|...+.||+|.|++||++++.    ....||+|.+.....   .....+|+++|..+ .+.||+++.++....+.
T Consensus        33 ~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~ts~---p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~  109 (418)
T KOG1167|consen   33 FISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRTSS---PSRILNELEMLYRLGGSDNIIKLNGCFRNNDQ  109 (418)
T ss_pred             hhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccccC---chHHHHHHHHHHHhccchhhhcchhhhccCCe
Confidence            34456778899999999999999953    467899999964432   34688999999998 58999999999999999


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..+|+||++.-+-.++...          ++..++..+......||.|+|..   +||||
T Consensus       110 v~ivlp~~~H~~f~~l~~~----------l~~~~i~~Yl~~ll~Al~~~h~~---GIvHR  156 (418)
T KOG1167|consen  110 VAIVLPYFEHDRFRDLYRS----------LSLAEIRWYLRNLLKALAHLHKN---GIVHR  156 (418)
T ss_pred             eEEEecccCccCHHHHHhc----------CCHHHHHHHHHHHHHHhhhhhcc---Ccccc
Confidence            9999999999888888763          55677788999999999999999   99998

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.08  E-value=4.8e-10  Score=99.66  Aligned_cols=118  Identities=16%  Similarity=0.036  Sum_probs=85.0

Q ss_pred             HHHHHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccc---------------------cCHHHHHHHHHHHh
Q 014778          282 ELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQ---------------------GGELQFQTEVEMIS  340 (419)
Q Consensus       282 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~---------------------~~~~~f~~E~~~l~  340 (419)
                      ++......+...+.||+|+||.||++..++|+.||||+++.....                     .....+.+|...+.
T Consensus         9 ~~~~~~~~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   88 (198)
T cd05144           9 TLVKRGVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALK   88 (198)
T ss_pred             HHHHcCchhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHH
Confidence            333333346667899999999999999888999999987532100                     01123677888899


Q ss_pred             cCCCCC--CcceeEEEecCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceec
Q 014778          341 MAVHRN--LLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLF  418 (419)
Q Consensus       341 ~l~H~n--iv~l~g~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiH  418 (419)
                      .+.|++  +.+.++    ....++||||+++++|.+....             .....++.+++.++.++|+.   +|+|
T Consensus        89 ~l~~~~i~v~~~~~----~~~~~lv~e~~~g~~L~~~~~~-------------~~~~~~~~~i~~~l~~lh~~---gi~H  148 (198)
T cd05144          89 ALYEEGFPVPKPID----WNRHAVVMEYIDGVELYRVRVL-------------EDPEEVLDEILEEIVKAYKH---GIIH  148 (198)
T ss_pred             HHHHcCCCCCceee----cCCceEEEEEeCCcchhhcccc-------------ccHHHHHHHHHHHHHHHHHC---CCCc
Confidence            888874  444443    2456899999999998765321             12345788999999999998   9999


Q ss_pred             C
Q 014778          419 C  419 (419)
Q Consensus       419 R  419 (419)
                      |
T Consensus       149 ~  149 (198)
T cd05144         149 G  149 (198)
T ss_pred             C
Confidence            7

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.08  E-value=6e-12  Score=128.34  Aligned_cols=126  Identities=29%  Similarity=0.450  Sum_probs=105.0

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCc-cccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPE-ELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~-~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .++.|.|-+|.|+...-+.|-+.++|+.|+|++|++. .+|. .+.++..|+.|+||+|.++ .+|..+.+++.|++|..
T Consensus       360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             HHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence            4677888899999888888888999999999999987 5664 5678888999999999998 88999999999999999


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCC-CCCCCCCCccccccccccCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLT-GDIPTNGSFSLFTPISFANNQ  199 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~-g~~p~~~~~~~~~~~~~~~n~  199 (419)
                      .+|++. .+| .+..++.|+++|+|.|+++ +.+|......++++++++||.
T Consensus       438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             cCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            999987 778 7888999999999999887 345554445788888888887

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=7.9e-11  Score=101.28  Aligned_cols=105  Identities=30%  Similarity=0.457  Sum_probs=41.1

Q ss_pred             CEEEEEcCCCCccccchhhhh-CCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCccc-CCCCCCCEEE
Q 014778           70 SVTRVDLGNANLSGQLVSQLG-QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTL-GKLSKLRFLR  147 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~-~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~-~~l~~L~~l~  147 (419)
                      +++.|+|++|.|+- + +.++ .+.+|+.|+|++|.|+ .++ .+..++.|+.|++++|+++ .+++.+ ..+++|+.|+
T Consensus        20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence            46788999998874 2 4566 5788999999999998 554 5788899999999999998 565544 3688999999


Q ss_pred             cccCcCcc-cCCccCcCCCCCcEEEcccCcCCC
Q 014778          148 LNNNSLMG-EIPRSLTNVNSLQVLDLSNNKLTG  179 (419)
Q Consensus       148 l~~N~l~g-~~p~~l~~l~~L~~l~l~~N~l~g  179 (419)
                      |++|++.. ..-..+..+++|+.|++.+|+++.
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            99998864 122456778899999999998864

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.06  E-value=1.7e-10  Score=113.85  Aligned_cols=117  Identities=18%  Similarity=0.213  Sum_probs=97.6

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEEe
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++.|.....+|+|+|+.|-++.. .+++..|||++....     .+-.+|+.++... .|+|++++.+.+.+..+.|+||
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~-----~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~  395 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRA-----DDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVM  395 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheeccccc-----cccccccchhhhhcCCCcceeecceecCCceeeeee
Confidence            56677778899999999999985 578899999995441     2345677665554 7999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |++.+|-+.+.+...+       .+. ..+..++.|++.|++|||++   +||||
T Consensus       396 e~l~g~ell~ri~~~~-------~~~-~e~~~w~~~lv~Av~~LH~~---gvvhR  439 (612)
T KOG0603|consen  396 ELLDGGELLRRIRSKP-------EFC-SEASQWAAELVSAVDYLHEQ---GVVHR  439 (612)
T ss_pred             hhccccHHHHHHHhcc-------hhH-HHHHHHHHHHHHHHHHHHhc---Ceeec
Confidence            9999999988887765       333 67778999999999999998   99998

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.03  E-value=2e-11  Score=118.65  Aligned_cols=102  Identities=32%  Similarity=0.497  Sum_probs=50.8

Q ss_pred             EEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCc
Q 014778           73 RVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNS  152 (419)
Q Consensus        73 ~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~  152 (419)
                      .|-+++|+++ .+|++++.+.+|..||.+.|.+. .+|..++.+.+|+.|++..|++. .+|+++..|+ |..||+|.|+
T Consensus       147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNk  222 (722)
T KOG0532|consen  147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNK  222 (722)
T ss_pred             eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCc
Confidence            3333344433 23444444444444444444444 34444444444444444444444 4444444332 5556666666


Q ss_pred             CcccCCccCcCCCCCcEEEcccCcCCC
Q 014778          153 LMGEIPRSLTNVNSLQVLDLSNNKLTG  179 (419)
Q Consensus       153 l~g~~p~~l~~l~~L~~l~l~~N~l~g  179 (419)
                      ++ .||-.|.+|+.|++|-|.+|.|+.
T Consensus       223 is-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  223 IS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             ee-ecchhhhhhhhheeeeeccCCCCC
Confidence            65 566666666666666666666654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.98  E-value=1.2e-09  Score=114.35  Aligned_cols=119  Identities=25%  Similarity=0.362  Sum_probs=80.1

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      ..++.|+|++|+|+ .+|..+.  .+|+.|+|++|+|+ .+|..+.  .+|+.|+|++|++. .+|..+.  ++|+.|+|
T Consensus       199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L  269 (754)
T PRK15370        199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL  269 (754)
T ss_pred             cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence            35778888888888 4565554  47888888888887 5776554  46788888888887 6777654  47888888


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~  201 (419)
                      ++|+++ .+|..+.  .+|+.|++++|+|++.++..  ...+..+++++|.+.
T Consensus       270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt  317 (754)
T PRK15370        270 FHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLT  317 (754)
T ss_pred             cCCccC-ccccccC--CCCcEEECCCCccccCcccc--hhhHHHHHhcCCccc
Confidence            888887 5676553  47888888888877532211  123444455555443

>PRK12274 serine/threonine protein kinase; Provisional

Probab=98.98  E-value=3.7e-09  Score=93.12  Aligned_cols=106  Identities=11%  Similarity=-0.007  Sum_probs=79.5

Q ss_pred             CCCeeCcCCceEEEEEEeCCCCEEEEEEccccccc---cCHHHHHHHHHHHhcCC-CCCCcceeEEEecCCceeEEeccC
Q 014778          292 NRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQ---GGELQFQTEVEMISMAV-HRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       292 ~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~---~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      ....+++|+||+||.+.- .+..++.+.+....-.   -...-|.+|+++|.++. |+++++++++    +..+++|||+
T Consensus         6 ~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvmeyI   80 (218)
T PRK12274          6 VNEPLKSDTFGRILLVRG-GERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRSYL   80 (218)
T ss_pred             cceeecCCCcceEEEeec-CCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEeee
Confidence            457899999999996665 5777887777433211   11225789999999995 5889999886    4579999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++.+|.+.+...              ...++.|++++++|+|+.   +|+||
T Consensus        81 ~G~~L~~~~~~~--------------~~~~~~qi~~~L~~lH~~---GIvHr  115 (218)
T PRK12274         81 AGAAMYQRPPRG--------------DLAYFRAARRLLQQLHRC---GVAHN  115 (218)
T ss_pred             cCccHHhhhhhh--------------hHHHHHHHHHHHHHHHHC---cCccC
Confidence            998987543211              123678999999999999   99998

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=98.97  E-value=4e-10  Score=100.49  Aligned_cols=117  Identities=15%  Similarity=0.276  Sum_probs=95.4

Q ss_pred             CeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCC-CCCCcceeEEEecCCceeEEeccCCCCC
Q 014778          294 NILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-HRNLLRLRGFCMTPTERLLVYPFMVNGS  371 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~e~~~~Gs  371 (419)
                      ..+|.|..|.|+++.++ +|..+|||.+.......+.+.....++++...+ .|.||+.+||+..+...++.||.|.. .
T Consensus        98 ~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelMs~-C  176 (391)
T KOG0983|consen   98 GDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELMST-C  176 (391)
T ss_pred             HhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHHHH-H
Confidence            56999999999999975 689999999976655555566777888776654 89999999999999999999999965 5


Q ss_pred             hhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          372 VASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       372 L~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++++|++-..      .+++.-+=++...+++||.||-++.  +||||
T Consensus       177 ~ekLlkrik~------piPE~ilGk~tva~v~AL~YLKeKH--~viHR  216 (391)
T KOG0983|consen  177 AEKLLKRIKG------PIPERILGKMTVAIVKALYYLKEKH--GVIHR  216 (391)
T ss_pred             HHHHHHHhcC------CchHHhhhhhHHHHHHHHHHHHHhc--ceeec
Confidence            6666665432      4777777788899999999998764  79998

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=98.96  E-value=3.6e-09  Score=88.84  Aligned_cols=109  Identities=12%  Similarity=0.028  Sum_probs=87.6

Q ss_pred             CCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCC--CCCcceeEEEecCCceeEEeccCCCC
Q 014778          293 RNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVH--RNLLRLRGFCMTPTERLLVYPFMVNG  370 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H--~niv~l~g~~~~~~~~~lv~e~~~~G  370 (419)
                      .+.+|+|.++.||++...+ ..+++|.......   ...+.+|+..+..++|  ..+.+++++....+..++++||++++
T Consensus         3 ~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~---~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~   78 (155)
T cd05120           3 IKLLKGGLTNRVYLLGTKD-EDYVLKINPSREK---GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGE   78 (155)
T ss_pred             ceecccccccceEEEEecC-CeEEEEecCCCCc---hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCe
Confidence            4679999999999999854 7899999854322   4579999999999977  48899998888888899999999988


Q ss_pred             ChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          371 SVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       371 sL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++..+              +......++.++++++.++|....++|+||
T Consensus        79 ~~~~~--------------~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~  113 (155)
T cd05120          79 TLDEV--------------SEEEKEDIAEQLAELLAKLHQLPLLVLCHG  113 (155)
T ss_pred             ecccC--------------CHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence            77654              223445678899999999998654578886

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.96  E-value=1e-09  Score=114.55  Aligned_cols=18  Identities=22%  Similarity=0.222  Sum_probs=10.6

Q ss_pred             CCccccccccccCCCCCC
Q 014778          185 GSFSLFTPISFANNQLNN  202 (419)
Q Consensus       185 ~~~~~~~~~~~~~n~~~~  202 (419)
                      ..+..+..+++++|++.+
T Consensus       442 ~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        442 IHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             hhccCCCeEECCCCCCCc
Confidence            344555666677776653

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=98.95  E-value=1.2e-10  Score=111.83  Aligned_cols=122  Identities=16%  Similarity=0.218  Sum_probs=101.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCCCC-EEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTDGS-LVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~g~-~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      .++.....+|-|+||.|-........ .+|+|.++...  .....+....|-.+|..++.|.||+++-.+.+..+.|++|
T Consensus       420 ~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLm  499 (732)
T KOG0614|consen  420 SDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLM  499 (732)
T ss_pred             hhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhH
Confidence            45556678999999999998875433 48999886433  2223345778999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |-|-+|.|...|++++       .|+...+..++.-+.+|++|||++   +||.|
T Consensus       500 EaClGGElWTiLrdRg-------~Fdd~tarF~~acv~EAfeYLH~k---~iIYR  544 (732)
T KOG0614|consen  500 EACLGGELWTILRDRG-------SFDDYTARFYVACVLEAFEYLHRK---GIIYR  544 (732)
T ss_pred             HhhcCchhhhhhhhcC-------CcccchhhhhHHHHHHHHHHHHhc---Cceec
Confidence            9999999999999887       566677777899999999999999   99987

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.94  E-value=1.3e-10  Score=104.81  Aligned_cols=127  Identities=27%  Similarity=0.334  Sum_probs=95.6

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN  149 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~  149 (419)
                      .++++|||+|.++ .+.++..-++.++.|++|+|.+. .+.. +..|.+|+.||||+|.++ ++-..=..+-+.++|.|+
T Consensus       285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            3677888888887 46677777788888888888887 4443 778888888888888887 555555567778888888


Q ss_pred             cCcCcccCCccCcCCCCCcEEEcccCcCCC--CCCCCCCccccccccccCCCCCC
Q 014778          150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTG--DIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       150 ~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g--~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      .|.+. . -+.++.+.+|..||+++|++..  .+-..+.+..+..+.+.+|++..
T Consensus       361 ~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  361 QNKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhHh-h-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            88875 2 2346778889999999998863  33345677777888888888764

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.92  E-value=5.8e-09  Score=99.98  Aligned_cols=121  Identities=17%  Similarity=0.170  Sum_probs=95.6

Q ss_pred             CCCCCCeeCcCCceEEEEEEeCCC--CEEEEEEccccccccCHHHHHHHHHHHhcCCC----CCCcceeEEE-ecCCcee
Q 014778          289 NFSNRNILGRGGFGKVYKGRLTDG--SLVAVKRLKEERTQGGELQFQTEVEMISMAVH----RNLLRLRGFC-MTPTERL  361 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~~g--~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H----~niv~l~g~~-~~~~~~~  361 (419)
                      .|.....||+|+||.||.+.....  ..+|+|.-......... .+..|+.++..+.+    +++.+++... ......+
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~-~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~   97 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPS-VLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNF   97 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCc-cchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeE
Confidence            688889999999999999996543  47888876443222222 67888888888863    5788888888 4777889


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||+.. +-+|.++.....     ...++..+.+.++.|++.+|+|||+.   ++|||
T Consensus        98 iVM~l~-G~sL~dl~~~~~-----~~~fs~~T~l~ia~q~l~~l~~lH~~---G~iHR  146 (322)
T KOG1164|consen   98 IVMSLL-GPSLEDLRKRNP-----PGRFSRKTVLRIAIQNLNALEDLHSK---GFIHR  146 (322)
T ss_pred             EEEecc-CccHHHHHHhCC-----CCCcCHhHHHHHHHHHHHHHHHHHhc---CcccC
Confidence            999977 559999765443     23788899999999999999999999   99998

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=98.92  E-value=1.4e-08  Score=95.86  Aligned_cols=121  Identities=21%  Similarity=0.313  Sum_probs=101.4

Q ss_pred             CCCCCeeCcCCceEEEEEEeCCCCEEEEEEcccccccc--CHHHHHHHHHHHhcCCCC-CCcceeEEEecCCceeEEecc
Q 014778          290 FSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQG--GELQFQTEVEMISMAVHR-NLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~--~~~~f~~E~~~l~~l~H~-niv~l~g~~~~~~~~~lv~e~  366 (419)
                      |.....+|.|+||.||++...  ..+|+|.+.......  ....|.+|+.+++.+.|+ +++++..++......++++||
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   79 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEY   79 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEec
Confidence            445678999999999999976  789999997554443  367899999999999988 799999999777778999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +.++++.+++......    ..+.......++.|++.++.|+|+.   +++||
T Consensus        80 ~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~H~~---~~~hr  125 (384)
T COG0515          80 VDGGSLEDLLKKIGRK----GPLSESEALFILAQILSALEYLHSK---GIIHR  125 (384)
T ss_pred             CCCCcHHHHHHhcccc----cCCCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            9999999777654311    2477788889999999999999999   89998

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.91  E-value=1.7e-09  Score=70.45  Aligned_cols=40  Identities=45%  Similarity=0.939  Sum_probs=31.0

Q ss_pred             hHHHHHHHHHHHhcC-CCCCCCCCCCCCC-CCCCCcceeEeC
Q 014778           27 NAEGDALNALKTNLA-DPNNVLQSWDATL-VNPCTWFHVTCN   66 (419)
Q Consensus        27 ~~~~~~l~~~~~~~~-~~~~~l~~w~~~~-~~~c~w~~v~c~   66 (419)
                      ++|.+||++||+++. +|...+.+|+.+. .+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence            579999999999998 5668899999874 799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.90  E-value=4.7e-10  Score=96.51  Aligned_cols=109  Identities=34%  Similarity=0.448  Sum_probs=39.7

Q ss_pred             hhhCCCCCCEEEcccCcccccCCcccc-CCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccC-cCCC
Q 014778           88 QLGQLTNLQYLELYSNNISGKVPEELG-NLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSL-TNVN  165 (419)
Q Consensus        88 ~~~~l~~L~~L~L~~N~l~g~~p~~~~-~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l-~~l~  165 (419)
                      .+.+...+++|+|++|.|+ .| +.++ .+.+|+.||||+|.++ .++ .+..+++|++|++++|+++ .++..+ ..++
T Consensus        14 ~~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp   88 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP   88 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-T
T ss_pred             ccccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence            4455667999999999998 45 4576 6899999999999998 565 5888999999999999998 455444 4689


Q ss_pred             CCcEEEcccCcCCCC--CCCCCCccccccccccCCCCC
Q 014778          166 SLQVLDLSNNKLTGD--IPTNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       166 ~L~~l~l~~N~l~g~--~p~~~~~~~~~~~~~~~n~~~  201 (419)
                      +|+.|++++|++...  +-....+..++.+++.+|+..
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            999999999999752  222345667788889988764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.89  E-value=1.4e-09  Score=113.52  Aligned_cols=104  Identities=22%  Similarity=0.303  Sum_probs=69.4

Q ss_pred             CEEEEEcCCCCccccchhhhhC-----------------CCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCC
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQ-----------------LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGP  132 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~-----------------l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~  132 (419)
                      .++.|+|++|+|++ +|....+                 ..+|+.|+|++|.|+ .+|..   .++|+.|++++|+|+ .
T Consensus       343 ~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-s  416 (788)
T PRK15387        343 GLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-S  416 (788)
T ss_pred             ccceEecCCCccCC-CCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-C
Confidence            46667777777764 3321111                 124555555566555 34432   245666777777776 4


Q ss_pred             CCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC
Q 014778          133 IPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT  183 (419)
Q Consensus       133 ~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~  183 (419)
                      +|..   ..+|+.|+|++|+++ .+|..+.++++|+.|++++|+|+|.+|.
T Consensus       417 IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        417 LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            6643   245777888888887 7899999999999999999999998764

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.89  E-value=2.7e-09  Score=93.78  Aligned_cols=111  Identities=16%  Similarity=0.138  Sum_probs=73.0

Q ss_pred             CCeeCcCCceEEEEEEeCCCCEEEEEEcccccccc-CHHH----------------------HHHHHHHHhcCCCCC--C
Q 014778          293 RNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQG-GELQ----------------------FQTEVEMISMAVHRN--L  347 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~-~~~~----------------------f~~E~~~l~~l~H~n--i  347 (419)
                      .+.||+|+||+||+|...+|+.||||+++...... ....                      ...|.+.+.++++..  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            36799999999999998889999999985432110 0111                      134555566655443  3


Q ss_pred             cceeEEEecCCceeEEeccCCCCChhhh-hcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhh-ccccceecC
Q 014778          348 LRLRGFCMTPTERLLVYPFMVNGSVASC-LRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKY-SCVSILLFC  419 (419)
Q Consensus       348 v~l~g~~~~~~~~~lv~e~~~~GsL~~~-L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~-~~~p~IiHR  419 (419)
                      .+.+++    ...++||||+++|++... +....        .. .++..++.+++.++.++|. .   +|+||
T Consensus        82 ~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~--------~~-~~~~~~~~~~~~~l~~lh~~~---~ivH~  139 (187)
T cd05119          82 PKPIDL----NRHVLVMEFIGGDGIPAPRLKDVR--------LL-EDPEELYDQILELMRKLYREA---GLVHG  139 (187)
T ss_pred             CceEec----CCCEEEEEEeCCCCccChhhhhhh--------hc-ccHHHHHHHHHHHHHHHhhcc---CcCcC
Confidence            333332    245899999999654321 11110        00 4567789999999999998 6   89997

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.88  E-value=1.5e-09  Score=76.74  Aligned_cols=59  Identities=41%  Similarity=0.635  Sum_probs=26.7

Q ss_pred             CCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCc
Q 014778           94 NLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNS  152 (419)
Q Consensus        94 ~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~  152 (419)
                      +|++|++++|+++..-+..|..+++|++|++++|.++..-|..|.++++|+.|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34445555554442222344444455555555444443333344444444444444443

...

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=98.87  E-value=2.6e-09  Score=99.45  Aligned_cols=121  Identities=19%  Similarity=0.192  Sum_probs=97.2

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCC------CCcceeEEEecCCc
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHR------NLLRLRGFCMTPTE  359 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~------niv~l~g~~~~~~~  359 (419)
                      ++.|.....+|+|.||.|.++... .+..||||+++.-..  -.+.-.-|++++.++.+.      -+|.+.+++.-.+.
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~k--YreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrgh  165 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNVDK--YREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGH  165 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHHHH--HhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCc
Confidence            566777889999999999999964 578999999964322  133567799999998432      35677777888899


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceec
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLF  418 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiH  418 (419)
                      .++|+|.+. -|+.++|+.+...     .++...+..++.|+++++.|||+.   +++|
T Consensus       166 iCivfellG-~S~~dFlk~N~y~-----~fpi~~ir~m~~QL~~sv~fLh~~---kl~H  215 (415)
T KOG0671|consen  166 ICIVFELLG-LSTFDFLKENNYI-----PFPIDHIRHMGYQLLESVAFLHDL---KLTH  215 (415)
T ss_pred             eEEEEeccC-hhHHHHhccCCcc-----ccchHHHHHHHHHHHHHHHHHHhc---ceee
Confidence            999999883 3999999986532     577778889999999999999999   8888

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=1.9e-09  Score=76.32  Aligned_cols=61  Identities=43%  Similarity=0.567  Sum_probs=54.8

Q ss_pred             CcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcC
Q 014778          117 TNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKL  177 (419)
Q Consensus       117 ~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l  177 (419)
                      ++|++|++++|+++..-+..|.++++|++|++++|+++...|..|..+++|+.|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999999954446789999999999999999977788999999999999999975

...

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.86  E-value=5.8e-10  Score=106.58  Aligned_cols=134  Identities=28%  Similarity=0.360  Sum_probs=87.3

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCC---CCEEEcccCcccc----cCCccccCC-CcCcEEeccccccCCC----CCc
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTN---LQYLELYSNNISG----KVPEELGNL-TNLVSLDLYLNNLNGP----IPT  135 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~---L~~L~L~~N~l~g----~~p~~~~~l-~~L~~L~ls~N~l~g~----~p~  135 (419)
                      ..+++.|++++|.+.+..+..+..+..   |++|++++|.+++    .+...+..+ ++|+.|++++|.+++.    ++.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            346788888888887666666666655   8888888887762    333445556 7788888888887743    333


Q ss_pred             ccCCCCCCCEEEcccCcCccc----CCccCcCCCCCcEEEcccCcCCCCCC-----CCCCccccccccccCCCCC
Q 014778          136 TLGKLSKLRFLRLNNNSLMGE----IPRSLTNVNSLQVLDLSNNKLTGDIP-----TNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       136 ~~~~l~~L~~l~l~~N~l~g~----~p~~l~~l~~L~~l~l~~N~l~g~~p-----~~~~~~~~~~~~~~~n~~~  201 (419)
                      .+..+.+|+.|++++|.+++.    ++..+..+++|+.|++++|.+++...     ....+..++.+++++|++.
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            455667788888888877742    33445556678888888887764322     1223455666777766543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=98.85  E-value=8.6e-09  Score=114.56  Aligned_cols=126  Identities=23%  Similarity=0.280  Sum_probs=102.7

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|+|++|...+.+|..++++++|+.|+|++|..-+.+|..+ ++++|+.|+|++|..-..+|..   ..+|+.|+|
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L  853 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL  853 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence            368889999998888899999999999999999876555888876 7899999999998766567753   367999999


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEccc-CcCCCCCCCCCCccccccccccCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSN-NKLTGDIPTNGSFSLFTPISFANNQ  199 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~-N~l~g~~p~~~~~~~~~~~~~~~n~  199 (419)
                      ++|.++ .+|.++..+++|+.|++++ |++++..+....+..++.++++++.
T Consensus       854 s~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        854 SRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            999997 7899999999999999988 6666644455666777777777664

syringae 6; Provisional

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.84  E-value=1e-08  Score=90.11  Aligned_cols=119  Identities=15%  Similarity=0.267  Sum_probs=97.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEE-eCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCC-CCCcceeEEEecCCceeEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVH-RNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H-~niv~l~g~~~~~~~~~lv~e  365 (419)
                      ..|...+.||.|+||.+|.|. ..+|..||||.=+...   ...+..-|.++...++| ..|..+..|..+.....+|||
T Consensus        15 gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a---~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMd   91 (341)
T KOG1163|consen   15 GKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKA---KHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMD   91 (341)
T ss_pred             cceEEEEeecCCchhheeeeeeccCCceEEEEeecccC---CCcchhHHHHHHHHhccCCCCchhhhhccccccceeeee
Confidence            468888999999999999999 5789999999753322   22367788888888876 567777888888888999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .. +-||.+...-..      +.++..+.+-+|-|++.-++|+|.+   ..|||
T Consensus        92 LL-GPsLEdLfnfC~------R~ftmkTvLMLaDQml~RiEyvH~r---~fiHR  135 (341)
T KOG1163|consen   92 LL-GPSLEDLFNFCS------RRFTMKTVLMLADQMLSRIEYVHLR---NFIHR  135 (341)
T ss_pred             cc-CccHHHHHHHHh------hhhhHHhHHHHHHHHHHHHHHHHhh---ccccc
Confidence            88 458888776432      2688899999999999999999999   89998

>PLN03210 Resistant to P

Probab=98.80  E-value=2.1e-08  Score=111.51  Aligned_cols=105  Identities=25%  Similarity=0.320  Sum_probs=49.0

Q ss_pred             CCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEE
Q 014778           92 LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLD  171 (419)
Q Consensus        92 l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~  171 (419)
                      +.+|+.|+|++|.+. .+|..+..+++|+.|+|++|...+.+|. ++.+++|+.|+|++|.....+|..++++++|+.|+
T Consensus       610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~  687 (1153)
T PLN03210        610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD  687 (1153)
T ss_pred             ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence            344555555555544 3444444555555555554443334442 44455555555555444444555555555555555


Q ss_pred             cccCcCCCCCCCCCCccccccccccCC
Q 014778          172 LSNNKLTGDIPTNGSFSLFTPISFANN  198 (419)
Q Consensus       172 l~~N~l~g~~p~~~~~~~~~~~~~~~n  198 (419)
                      +++|..-+.+|....++++..++++++
T Consensus       688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc  714 (1153)
T PLN03210        688 MSRCENLEILPTGINLKSLYRLNLSGC  714 (1153)
T ss_pred             CCCCCCcCccCCcCCCCCCCEEeCCCC
Confidence            554433334443333334444444433

syringae 6; Provisional

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.78  E-value=1.1e-09  Score=112.03  Aligned_cols=105  Identities=30%  Similarity=0.460  Sum_probs=93.5

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..+++.|+|++|.|+.-....+.++..|++|+||+|.++ .+|.++..+..|++|...+|++. ..| ++.+++.|+.+|
T Consensus       382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lD  458 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLD  458 (1081)
T ss_pred             ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEe
Confidence            457999999999998655677899999999999999999 89999999999999999999998 788 899999999999


Q ss_pred             cccCcCcc-cCCccCcCCCCCcEEEcccCc
Q 014778          148 LNNNSLMG-EIPRSLTNVNSLQVLDLSNNK  176 (419)
Q Consensus       148 l~~N~l~g-~~p~~l~~l~~L~~l~l~~N~  176 (419)
                      +|.|+|+- .+|...-. ++|++||+++|.
T Consensus       459 lS~N~L~~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  459 LSCNNLSEVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             cccchhhhhhhhhhCCC-cccceeeccCCc
Confidence            99999974 55554433 899999999996

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.75  E-value=1.2e-09  Score=106.43  Aligned_cols=130  Identities=32%  Similarity=0.502  Sum_probs=114.9

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      ..++.|||+.|+++ .+|..++.|+ |+.|-+++|+++ .+|++++.+..|..||.+.|++. ++|+.++.+.+|+.|.+
T Consensus       121 ~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~v  196 (722)
T KOG0532|consen  121 EALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNV  196 (722)
T ss_pred             hHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHH
Confidence            46788999999998 6788888886 899999999998 89999999999999999999998 89999999999999999


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPP  204 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~~  204 (419)
                      ..|++. .+|..+..| .|..||+|.|+++-.+-.+..++.++.+.+.+|++.++|
T Consensus       197 rRn~l~-~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  197 RRNHLE-DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             hhhhhh-hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCCh
Confidence            999998 788888844 588999999999864446778888999999999988554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.72  E-value=8.7e-10  Score=103.03  Aligned_cols=131  Identities=28%  Similarity=0.376  Sum_probs=110.0

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccc-cccCCCCC-cccCCCCCCCEEE
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYL-NNLNGPIP-TTLGKLSKLRFLR  147 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~-N~l~g~~p-~~~~~l~~L~~l~  147 (419)
                      ..+.|+|..|+|+...|..|+.+++|+.||||+|+|+-.-|..|.+|.+|..|-+-+ |+++ .+| ..|++|.+|+.|.
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHh
Confidence            578999999999988888999999999999999999988899999999988765555 9999 555 5688999999999


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCCCC-CCCCccccccccccCCCCC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP-TNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p-~~~~~~~~~~~~~~~n~~~  201 (419)
                      +.-|++.-...+.|..+++|..|.+-+|.+....- .+..+..++++.+..|++.
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i  201 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI  201 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc
Confidence            99999997778889999999999999998864322 2344556677777777754

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.72  E-value=8.5e-08  Score=87.70  Aligned_cols=111  Identities=11%  Similarity=0.037  Sum_probs=81.9

Q ss_pred             CCeeC-cCCceEEEEEEeCCCCEEEEEEccccc------------cccCHHHHHHHHHHHhcCCCCCC--cceeEEEecC
Q 014778          293 RNILG-RGGFGKVYKGRLTDGSLVAVKRLKEER------------TQGGELQFQTEVEMISMAVHRNL--LRLRGFCMTP  357 (419)
Q Consensus       293 ~~~lG-~G~fg~Vy~~~~~~g~~vAvK~l~~~~------------~~~~~~~f~~E~~~l~~l~H~ni--v~l~g~~~~~  357 (419)
                      ..++| .|+.|+||+.... +..++||++....            .......+.+|++++..++|+++  ++.+++....
T Consensus        36 ~~~lg~~~g~gtv~~v~~~-~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~  114 (239)
T PRK01723         36 ARVVGSAKGRGTTWFVQTP-GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVR  114 (239)
T ss_pred             CceeecCCCCccEEEEEeC-CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeee
Confidence            36788 8999999999885 6789999884311            01123467899999999999885  6777765443


Q ss_pred             Cc----eeEEeccCCC-CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 TE----RLLVYPFMVN-GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~~----~~lv~e~~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..    .++|+||+++ ++|.+++....        ++.    ..+.||+.++.+||+.   +|+||
T Consensus       115 ~~~~~~~~lV~e~l~G~~~L~~~l~~~~--------l~~----~~~~~i~~~l~~lH~~---GI~Hr  166 (239)
T PRK01723        115 HGLFYRADILIERIEGARDLVALLQEAP--------LSE----EQWQAIGQLIARFHDA---GVYHA  166 (239)
T ss_pred             cCcceeeeEEEEecCCCCCHHHHHhcCC--------CCH----HHHHHHHHHHHHHHHC---CCCCC
Confidence            22    2599999997 69998886531        222    2367899999999999   99997

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.71  E-value=1.8e-09  Score=103.09  Aligned_cols=133  Identities=25%  Similarity=0.254  Sum_probs=93.7

Q ss_pred             CCEEEEEcCCCCcc------ccchhhhhCCCCCCEEEcccCcccccCCccccCCCc---CcEEeccccccCC----CCCc
Q 014778           69 NSVTRVDLGNANLS------GQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTN---LVSLDLYLNNLNG----PIPT  135 (419)
Q Consensus        69 ~~~~~l~L~~~~l~------g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~---L~~L~ls~N~l~g----~~p~  135 (419)
                      ..++.++++++.+.      +.++..+..+++|+.|+|++|.+.+..+..+..+..   |+.|++++|++++    .+..
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            45778888887776      335567778888888888888887666666666665   8888888888873    2334


Q ss_pred             ccCCC-CCCCEEEcccCcCccc----CCccCcCCCCCcEEEcccCcCCCCC----C-CCCCccccccccccCCCCC
Q 014778          136 TLGKL-SKLRFLRLNNNSLMGE----IPRSLTNVNSLQVLDLSNNKLTGDI----P-TNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       136 ~~~~l-~~L~~l~l~~N~l~g~----~p~~l~~l~~L~~l~l~~N~l~g~~----p-~~~~~~~~~~~~~~~n~~~  201 (419)
                      .+..+ ++|+.|+|++|.+++.    ++..+..+.+|+.|++++|.+++..    + .......++.+++++|.+.
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  206 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT  206 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence            45566 7888888888888743    3445666778888888888887521    1 1122346777888877654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.69  E-value=1.2e-08  Score=107.66  Aligned_cols=123  Identities=15%  Similarity=0.267  Sum_probs=94.5

Q ss_pred             HHHHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCC---CCCCcceeEEEecCCc
Q 014778          283 LQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV---HRNLLRLRGFCMTPTE  359 (419)
Q Consensus       283 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~~~~  359 (419)
                      .+...+.|.....+|+|+||+||+|...+|+.||+|.=+.....    +|.-=.+++.+++   -+.|..+..++.-.+.
T Consensus       693 ~~~~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~W----EfYI~~q~~~RLk~~~~~~~~~~~~a~~~~~~  768 (974)
T KOG1166|consen  693 FEVGGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPW----EFYICLQVMERLKPQMLPSIMHISSAHVFQNA  768 (974)
T ss_pred             eeecceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCce----eeeehHHHHHhhchhhhcchHHHHHHHccCCc
Confidence            33445667778899999999999999888999999987543322    2332233444554   2345555555666778


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      -++|+||.+.|+|.+++...+       .++|.-.+.++.|++.-++.||..   +|||.
T Consensus       769 S~lv~ey~~~Gtlld~~N~~~-------~m~e~lv~~~~~qml~ive~lH~~---~IIHg  818 (974)
T KOG1166|consen  769 SVLVSEYSPYGTLLDLINTNK-------VMDEYLVMFFSCQMLRIVEHLHAM---GIIHG  818 (974)
T ss_pred             ceeeeeccccccHHHhhccCC-------CCCchhhhHHHHHHHHHHHHHHhc---ceecc
Confidence            899999999999999998554       688888899999999999999999   99995

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.66  E-value=9.4e-09  Score=101.46  Aligned_cols=127  Identities=34%  Similarity=0.563  Sum_probs=74.5

Q ss_pred             CEEEEEcCCCCccccchhhhhCCC-CCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLT-NLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~-~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .++.|++.+|+++ .+++..+.+. +|+.|+++.|.+. .+|..+..+++|+.|++++|+++ .+|...+.+++|+.|++
T Consensus       117 ~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         117 NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheec
Confidence            4566666666666 3555555553 6666666666666 55556666666666666666666 56655556666666666


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQL  200 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~  200 (419)
                      ++|+++ .+|.....+..|+++++++|+..-.+.....+.++..+.+.+|++
T Consensus       194 s~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         194 SGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL  244 (394)
T ss_pred             cCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee
Confidence            666665 555555555556666666664333333333344444444444444

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=98.66  E-value=1.8e-08  Score=91.92  Aligned_cols=116  Identities=16%  Similarity=0.163  Sum_probs=88.3

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecC------Ccee
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP------TERL  361 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~~~~  361 (419)
                      |.....+|.|.- .|..+... .++.||+|++.... .....+.-.+|..++..+.|+|+++++.++...      .+.|
T Consensus        19 y~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y   97 (369)
T KOG0665|consen   19 YVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVY   97 (369)
T ss_pred             eeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHH
Confidence            344466777766 45555532 57899999984322 223355678999999999999999999998764      3468


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|||||.. +|.+.++-         .++-.....+..|++.|+.|||+.   +|+||
T Consensus        98 ~v~e~m~~-nl~~vi~~---------elDH~tis~i~yq~~~~ik~lhs~---~IihR  142 (369)
T KOG0665|consen   98 LVMELMDA-NLCQVILM---------ELDHETISYILYQMLCGIKHLHSA---GIIHR  142 (369)
T ss_pred             HHHHhhhh-HHHHHHHH---------hcchHHHHHHHHHHHHHHHHHHhc---ceeec
Confidence            99999975 89988873         244555667899999999999999   99998

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.61  E-value=4.8e-09  Score=94.87  Aligned_cols=110  Identities=22%  Similarity=0.310  Sum_probs=88.5

Q ss_pred             hhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCC
Q 014778           87 SQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNS  166 (419)
Q Consensus        87 ~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~  166 (419)
                      ..+...+.|++||||+|.|+ .+.++..-++.++.|++|+|++. .+ .++..+++|+.||||+|.++ .+-.+-..+.+
T Consensus       278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN  353 (490)
T KOG1259|consen  278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGN  353 (490)
T ss_pred             EecchHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence            34445567899999999998 88888888999999999999997 33 44888999999999999998 55566677888


Q ss_pred             CcEEEcccCcCCCCCCCCCCccccccccccCCCCC
Q 014778          167 LQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       167 L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~  201 (419)
                      .+.|.|+.|.+.. ....+.+-.+..+++.+|++.
T Consensus       354 IKtL~La~N~iE~-LSGL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  354 IKTLKLAQNKIET-LSGLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             EeeeehhhhhHhh-hhhhHhhhhheeccccccchh
Confidence            9999999998753 223455667788899998875

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.59  E-value=1.7e-08  Score=99.69  Aligned_cols=131  Identities=37%  Similarity=0.531  Sum_probs=108.3

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN  149 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~  149 (419)
                      .++.|++++|.+. .+|..++.+++|+.|++++|.++ .+|...+.++.|+.|++++|+++ .+|..+..+..|+.|+++
T Consensus       141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence            6999999999998 46678999999999999999999 78888778999999999999998 899887777789999999


Q ss_pred             cCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCCCC
Q 014778          150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPP  204 (419)
Q Consensus       150 ~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~~  204 (419)
                      +|... .++..+.++.++..+.+++|++...+-....+..++.+++++|++...+
T Consensus       218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~  271 (394)
T COG4886         218 NNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSIS  271 (394)
T ss_pred             CCcce-ecchhhhhcccccccccCCceeeeccchhccccccceeccccccccccc
Confidence            99643 5667788888888888888887764334455566778888888776543

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.52  E-value=4.8e-07  Score=83.26  Aligned_cols=119  Identities=16%  Similarity=0.226  Sum_probs=91.8

Q ss_pred             hCCCCCCeeCcCCceEEEEEE-eCCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      -+|...+.||+|.||..+.|+ +-+++.||||.=... +  ...+...|-+..+.+ .-++|...+.|-.+.....||+|
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEPrk-S--~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVid  104 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEPRK-S--EAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVID  104 (449)
T ss_pred             ccceeccccccCcceeeecccccccCceEEEEecccc-C--CcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhh
Confidence            367888999999999999999 567999999964221 1  223567777776666 45788887777777778889999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .+- -||+++..-..      ++|+..+.+.+|.|++.-++|+|++   ..|.|
T Consensus       105 LLG-PSLEDLFD~Cg------R~FSvKTV~miA~Qmi~rie~vH~k---~LIYR  148 (449)
T KOG1165|consen  105 LLG-PSLEDLFDLCG------RRFSVKTVAMIAKQMITRIEYVHEK---DLIYR  148 (449)
T ss_pred             hhC-cCHHHHHHHhc------CcccHHhHHHHHHHHHHHHHHHHhc---ceeec
Confidence            884 48887765432      2799999999999999999999988   55544

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.48  E-value=3.8e-07  Score=90.80  Aligned_cols=118  Identities=19%  Similarity=0.146  Sum_probs=75.4

Q ss_pred             CCCCCCeeCcCCceEEEEEEeCCCCEEEEEEcccccccc---------------------------------------CH
Q 014778          289 NFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQG---------------------------------------GE  329 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~---------------------------------------~~  329 (419)
                      .|+ .+.||.|++|.||+|++++|+.||||+.+......                                       .+
T Consensus       119 ~fd-~~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~E  197 (437)
T TIGR01982       119 EFE-EKPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRE  197 (437)
T ss_pred             hCC-CcceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHH
Confidence            344 36799999999999999999999999986431000                                       01


Q ss_pred             HHHHHHHHHHhcC----CCCCCcceeEEEec-CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHH-
Q 014778          330 LQFQTEVEMISMA----VHRNLLRLRGFCMT-PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQ-  403 (419)
Q Consensus       330 ~~f~~E~~~l~~l----~H~niv~l~g~~~~-~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~-  403 (419)
                      -+|.+|.+.+.++    +|.+-|.+-..+.+ ....+|||||+++++|.++......      ..   +..+++.+++. 
T Consensus       198 ldf~~Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~------~~---~~~~ia~~~~~~  268 (437)
T TIGR01982       198 LDLRREAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEA------GL---DRKALAENLARS  268 (437)
T ss_pred             HCHHHHHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhc------CC---CHHHHHHHHHHH
Confidence            1355666655554    33333333333332 4567999999999999887653211      11   22345666655 


Q ss_pred             HHHHhhhccccceecC
Q 014778          404 SLHFAKYSCVSILLFC  419 (419)
Q Consensus       404 gl~yLH~~~~p~IiHR  419 (419)
                      .+.++|..   +++||
T Consensus       269 ~l~ql~~~---g~~H~  281 (437)
T TIGR01982       269 FLNQVLRD---GFFHA  281 (437)
T ss_pred             HHHHHHhC---CceeC
Confidence            46778877   88886

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.45  E-value=9.5e-07  Score=79.50  Aligned_cols=110  Identities=13%  Similarity=0.068  Sum_probs=84.5

Q ss_pred             CeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCC--CCcceeEEEecCC---ceeEEeccCC
Q 014778          294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHR--NLLRLRGFCMTPT---ERLLVYPFMV  368 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~--niv~l~g~~~~~~---~~~lv~e~~~  368 (419)
                      +.++.|.++.||++...+|+.+++|.............+.+|.+++..+++.  ++.+++++.....   ..++||||++
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~   83 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVD   83 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeC
Confidence            5689999999999998777889999985433222345789999999998764  4567777776542   5689999999


Q ss_pred             CCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 014778          369 NGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYS  411 (419)
Q Consensus       369 ~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~  411 (419)
                      ++++.+.+.. .       .++..+...++.++++.+.+||+-
T Consensus        84 G~~l~~~~~~-~-------~~~~~~~~~i~~~i~~~l~~lH~~  118 (223)
T cd05154          84 GRVLRDRLLR-P-------ELSPEERRALARALADTLAALHSV  118 (223)
T ss_pred             CEecCCCCCC-C-------CCCHHHHHHHHHHHHHHHHHHhCC
Confidence            9888765532 1       366667788999999999999965

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.44  E-value=1.5e-08  Score=81.49  Aligned_cols=83  Identities=27%  Similarity=0.366  Sum_probs=38.4

Q ss_pred             CCCCCEEEcccCcccccCCccccCC-CcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEE
Q 014778           92 LTNLQYLELYSNNISGKVPEELGNL-TNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVL  170 (419)
Q Consensus        92 l~~L~~L~L~~N~l~g~~p~~~~~l-~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l  170 (419)
                      ...|+..+|++|.|. .+|+.|... +.+++|+|++|.++ .+|.++..++.|+.|+++.|.+. ..|.-+..|.+|..|
T Consensus        52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML  128 (177)
T ss_pred             CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence            333444455555554 344443322 24445555555554 44555555555555555555544 334444444444444


Q ss_pred             EcccCcC
Q 014778          171 DLSNNKL  177 (419)
Q Consensus       171 ~l~~N~l  177 (419)
                      |..+|..
T Consensus       129 ds~~na~  135 (177)
T KOG4579|consen  129 DSPENAR  135 (177)
T ss_pred             cCCCCcc
Confidence            4444433

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.38  E-value=9.9e-08  Score=89.50  Aligned_cols=92  Identities=26%  Similarity=0.286  Sum_probs=78.1

Q ss_pred             hhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCC
Q 014778           87 SQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNS  166 (419)
Q Consensus        87 ~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~  166 (419)
                      ..|.+|++|+.|+|++|.+++.-+.+|..+.+++.|.|..|++.-.--..|.+++.|++|+|.+|+++-.-|..|..+.+
T Consensus       268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~  347 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS  347 (498)
T ss_pred             HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence            35788999999999999999888888889999999999999887555556778889999999999998888888888889


Q ss_pred             CcEEEcccCcCC
Q 014778          167 LQVLDLSNNKLT  178 (419)
Q Consensus       167 L~~l~l~~N~l~  178 (419)
                      |..|++-.|.+.
T Consensus       348 l~~l~l~~Np~~  359 (498)
T KOG4237|consen  348 LSTLNLLSNPFN  359 (498)
T ss_pred             eeeeehccCccc
Confidence            999988888764

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.37  E-value=1e-08  Score=82.44  Aligned_cols=111  Identities=28%  Similarity=0.393  Sum_probs=86.4

Q ss_pred             CCCEEEEEcCCCCccccchhhhh-CCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLG-QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFL  146 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~-~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l  146 (419)
                      ...++.++|++|.|.. +|+.|. ..+.++.|+|++|.|+ .+|.++..++.|+.|+++.|.|. ..|..+..|.+|-.|
T Consensus        52 ~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML  128 (177)
T ss_pred             CceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence            3468889999999985 555555 5568999999999998 79999999999999999999998 788888889999999


Q ss_pred             EcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCC
Q 014778          147 RLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP  182 (419)
Q Consensus       147 ~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p  182 (419)
                      |..+|.+. +||-.+-.-+.+-..++.++.+.+.-|
T Consensus       129 ds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~  163 (177)
T KOG4579|consen  129 DSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETK  163 (177)
T ss_pred             cCCCCccc-cCcHHHhccccHHHHHhcCCcccccCc
Confidence            99999876 666554433344444556666666544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.35  E-value=8.6e-09  Score=103.14  Aligned_cols=125  Identities=30%  Similarity=0.356  Sum_probs=80.1

Q ss_pred             EEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcc-cCCCCCCCEEEcc
Q 014778           71 VTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTT-LGKLSKLRFLRLN  149 (419)
Q Consensus        71 ~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~l~~L~~l~l~  149 (419)
                      +..++.+.|.|. ....++.-++.|+.|||++|+++. .. .+..|++|++|||+.|.+. .+|.. ...+ .|+.|.|+
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~-v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK-VD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh-hH-HHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence            445566666665 345667777778888888888873 33 6777788888888888876 55542 1222 37777888


Q ss_pred             cCcCcccCCccCcCCCCCcEEEcccCcCCCCCC--CCCCccccccccccCCCCCC
Q 014778          150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP--TNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       150 ~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p--~~~~~~~~~~~~~~~n~~~~  202 (419)
                      +|.++. + ..+.+|.+|+.||+++|-+++---  ....+..+..+.+.||++.+
T Consensus       241 nN~l~t-L-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  241 NNALTT-L-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             ccHHHh-h-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            877752 2 235677777778888887765321  12334455666777777654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.28  E-value=5.4e-07  Score=58.72  Aligned_cols=36  Identities=44%  Similarity=0.659  Sum_probs=16.0

Q ss_pred             CCCEEEcccCcccccCCccccCCCcCcEEeccccccC
Q 014778           94 NLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLN  130 (419)
Q Consensus        94 ~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~  130 (419)
                      +|++|+|++|+|+ .+|+++.+|++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 34444444444444444444444

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.22  E-value=1.1e-06  Score=57.29  Aligned_cols=37  Identities=38%  Similarity=0.565  Sum_probs=24.8

Q ss_pred             CcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCc
Q 014778          117 TNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLM  154 (419)
Q Consensus       117 ~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~  154 (419)
                      ++|++|++++|+++ .+|+.+++|++|+.|++++|+++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            35677777777776 56666777777777777777766

...

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.16  E-value=4.2e-06  Score=84.65  Aligned_cols=122  Identities=20%  Similarity=0.185  Sum_probs=75.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCC-CCEEEEEEccccccc---------------------c------------------
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTD-GSLVAVKRLKEERTQ---------------------G------------------  327 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~---------------------~------------------  327 (419)
                      ..|+. +.+|+|++|.||+|++++ |+.||||+++.....                     .                  
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~  198 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLH  198 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHH
Confidence            45665 789999999999999987 999999999643100                     0                  


Q ss_pred             CHHHHHHHHHHHhcC----CCCCCcceeEEEec-CCceeEEeccCCCCChhhh--hcCCccccCCCcchhhHHHHHHHHH
Q 014778          328 GELQFQTEVEMISMA----VHRNLLRLRGFCMT-PTERLLVYPFMVNGSVASC--LRGMFIVSGFPSFFSYLFFIAFVQS  400 (419)
Q Consensus       328 ~~~~f~~E~~~l~~l----~H~niv~l~g~~~~-~~~~~lv~e~~~~GsL~~~--L~~~~~~~~~~~~~~~~~~~~i~~q  400 (419)
                      .+-+|.+|+.-+.++    .+.+.+.+-.++.+ ....+|||||++++.+.+.  +.....   ....+....+..++.|
T Consensus       199 ~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~---d~~~la~~~v~~~~~Q  275 (537)
T PRK04750        199 DELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGT---DMKLLAERGVEVFFTQ  275 (537)
T ss_pred             HhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCC---CHHHHHHHHHHHHHHH
Confidence            012355565555444    24444444444443 4567899999999999874  222210   1113455455566667


Q ss_pred             HHHHHHHhhhcccc
Q 014778          401 LIQSLHFAKYSCVS  414 (419)
Q Consensus       401 ia~gl~yLH~~~~p  414 (419)
                      +.. -.+.|.+.+|
T Consensus       276 if~-~GffHaDpHP  288 (537)
T PRK04750        276 VFR-DGFFHADMHP  288 (537)
T ss_pred             HHh-CCeeeCCCCh
Confidence            664 4555555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=1.1e-06  Score=83.71  Aligned_cols=110  Identities=25%  Similarity=0.257  Sum_probs=63.1

Q ss_pred             CCCEEEEEcCCCCcccc-chhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCC--cccCCCCCCC
Q 014778           68 ENSVTRVDLGNANLSGQ-LVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIP--TTLGKLSKLR  144 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~-~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p--~~~~~l~~L~  144 (419)
                      ..++++|.|+.|+|+-. +-.-+-.+++|+.|+|..|..-+.--....-+..|+.|||++|++- ..+  ...+.++.|+
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLN  274 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchh
Confidence            34566666666666642 2233445666777777776422222222334556777777777765 333  3456667777


Q ss_pred             EEEcccCcCcc-cCCcc-----CcCCCCCcEEEcccCcCC
Q 014778          145 FLRLNNNSLMG-EIPRS-----LTNVNSLQVLDLSNNKLT  178 (419)
Q Consensus       145 ~l~l~~N~l~g-~~p~~-----l~~l~~L~~l~l~~N~l~  178 (419)
                      .|+++.+.+.. .+|+.     ...+++|++|+++.|++.
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            77777766653 23433     345667777777777664

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.11  E-value=1.1e-06  Score=93.77  Aligned_cols=106  Identities=28%  Similarity=0.406  Sum_probs=88.3

Q ss_pred             CEEEEEcCCCCc-cccch-hhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           70 SVTRVDLGNANL-SGQLV-SQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        70 ~~~~l~L~~~~l-~g~~~-~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      .+++|-+..|.. -..++ ..|..++.|+.||||+|.=-+.+|..++.|-+|++|+|++..++ .+|..+++|..|.+||
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            578888888862 22344 44778999999999998777799999999999999999999998 8999999999999999


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCc
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNK  176 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~  176 (419)
                      +..+.-...+|.-+..+.+|++|.+-...
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccccccccccchhhhcccccEEEeeccc
Confidence            99887666677777779999999876554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=5.2e-07  Score=85.79  Aligned_cols=131  Identities=24%  Similarity=0.222  Sum_probs=69.6

Q ss_pred             CCEEEEEcCCCCcccc--chhhhhCCCCCCEEEcccCcccccCCccc-cCCCcCcEEeccccccCCCCCc-ccCCCCCCC
Q 014778           69 NSVTRVDLGNANLSGQ--LVSQLGQLTNLQYLELYSNNISGKVPEEL-GNLTNLVSLDLYLNNLNGPIPT-TLGKLSKLR  144 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~--~~~~~~~l~~L~~L~L~~N~l~g~~p~~~-~~l~~L~~L~ls~N~l~g~~p~-~~~~l~~L~  144 (419)
                      ..++.|||+.|-|+--  +-.-...|++|+.|+|+.|.+.-...... ..+++|+.|.|+.+.|++.--. -...+++|+
T Consensus       146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~  225 (505)
T KOG3207|consen  146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE  225 (505)
T ss_pred             CcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence            3577777777776642  23344567777777777777763322222 1456677777777776643111 122456666


Q ss_pred             EEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCC--CCCCCccccccccccCCC
Q 014778          145 FLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDI--PTNGSFSLFTPISFANNQ  199 (419)
Q Consensus       145 ~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~--p~~~~~~~~~~~~~~~n~  199 (419)
                      .|+|..|..-+..-.....+..|+.|||++|++-...  +..+.++.+..++++.+.
T Consensus       226 ~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg  282 (505)
T KOG3207|consen  226 VLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG  282 (505)
T ss_pred             HhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC
Confidence            6666666422222223344556666666666654332  333444444444444443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.08  E-value=8.1e-08  Score=96.35  Aligned_cols=106  Identities=26%  Similarity=0.262  Sum_probs=85.1

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      +.+..|||++|.++..  ..+..|+.|++|||++|.+. .+|.--..=.+|+.|.+++|.++ ++ ..+.+|.+|+.|||
T Consensus       187 ~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~LksL~~LDl  261 (1096)
T KOG1859|consen  187 PALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TL-RGIENLKSLYGLDL  261 (1096)
T ss_pred             HHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hh-hhHHhhhhhhccch
Confidence            3578899999999864  38999999999999999998 67753222234999999999997 33 35789999999999


Q ss_pred             ccCcCccc-CCccCcCCCCCcEEEcccCcCCC
Q 014778          149 NNNSLMGE-IPRSLTNVNSLQVLDLSNNKLTG  179 (419)
Q Consensus       149 ~~N~l~g~-~p~~l~~l~~L~~l~l~~N~l~g  179 (419)
                      ++|-+++. --..++.|..|+.|+|.+|++-.
T Consensus       262 syNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  262 SYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            99999863 22346778899999999998753

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.06  E-value=1.3e-06  Score=80.44  Aligned_cols=78  Identities=14%  Similarity=0.281  Sum_probs=61.8

Q ss_pred             HHhcCCCCCCcceeEEEecCC-----ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhcc
Q 014778          338 MISMAVHRNLLRLRGFCMTPT-----ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSC  412 (419)
Q Consensus       338 ~l~~l~H~niv~l~g~~~~~~-----~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~  412 (419)
                      -+-.+.|.|||++..|+.+..     ...++.|||+.|++.++|++....   +..+....-.+++-||..||.||| .|
T Consensus       120 nllqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~---~~a~~~~~wkkw~tqIlsal~yLh-s~  195 (458)
T KOG1266|consen  120 NLLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKN---QKALFQKAWKKWCTQILSALSYLH-SC  195 (458)
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhhhhhhh-cc
Confidence            345667999999999987643     357899999999999999975422   224555556788999999999999 67


Q ss_pred             ccceecC
Q 014778          413 VSILLFC  419 (419)
Q Consensus       413 ~p~IiHR  419 (419)
                      .|+|+|.
T Consensus       196 ~Ppiihg  202 (458)
T KOG1266|consen  196 DPPIIHG  202 (458)
T ss_pred             CCccccC
Confidence            9999994

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.00  E-value=2.1e-06  Score=88.49  Aligned_cols=118  Identities=15%  Similarity=0.138  Sum_probs=86.0

Q ss_pred             CCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCH----HHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          291 SNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGE----LQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       291 ~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~----~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ...+++|.|++|.|+.... ......+.|..+... ....+    ..+..|..+-..++|+|++..+..+.+.....-.|
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~m  400 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSM  400 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhh
Confidence            3457899999997777663 234444444432100 11111    12556777778899999988877777766666669


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++ +|..++.+..       .+...++..++.|++.|+.|+|+.   +|.||
T Consensus       401 E~~~~-Dlf~~~~~~~-------~~~~~e~~c~fKqL~~Gv~y~h~~---Giahr  444 (601)
T KOG0590|consen  401 EYCPY-DLFSLVMSNG-------KLTPLEADCFFKQLLRGVKYLHSM---GLAHR  444 (601)
T ss_pred             hcccH-HHHHHHhccc-------ccchhhhhHHHHHHHHHHHHHHhc---Cceec
Confidence            99999 9999998763       577888899999999999999999   99998

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.00  E-value=1.9e-05  Score=67.91  Aligned_cols=106  Identities=15%  Similarity=0.078  Sum_probs=73.2

Q ss_pred             CeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCc-ceeEEEecCCceeEEeccCCCCCh
Q 014778          294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLL-RLRGFCMTPTERLLVYPFMVNGSV  372 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv-~l~g~~~~~~~~~lv~e~~~~GsL  372 (419)
                      +.++.|.++.||+++.. +..|++|.......  ....+.+|.+.+..+.+.+++ +++++.  .+..++||||+++.++
T Consensus         4 ~~l~~G~~~~vy~~~~~-~~~~~lK~~~~~~~--~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~~~lv~e~i~G~~l   78 (170)
T cd05151           4 SPLKGGMTNKNYRVEVA-NKKYVVRIPGNGTE--LLINRENEAENSKLAAEAGIGPKLYYFD--PETGVLITEFIEGSEL   78 (170)
T ss_pred             eecCCcccCceEEEEEC-CeEEEEEeCCCCcc--cccCHHHHHHHHHHHHHhCCCCceEEEe--CCCCeEEEEecCCCcc
Confidence            56889999999999975 77899998754321  223568899999888766655 344433  3346899999999887


Q ss_pred             hhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhcc--ccceecC
Q 014778          373 ASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSC--VSILLFC  419 (419)
Q Consensus       373 ~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~--~p~IiHR  419 (419)
                      .+.   ..        .    ....+.+++++++.||+..  .+.++|+
T Consensus        79 ~~~---~~--------~----~~~~~~~l~~~l~~LH~~~~~~~~~~Hg  112 (170)
T cd05151          79 LTE---DF--------S----DPENLEKIAKLLKKLHSSPLPDLVPCHN  112 (170)
T ss_pred             ccc---cc--------c----CHHHHHHHHHHHHHHhCCCCCCceeecC
Confidence            643   00        0    1124678999999999772  1235885

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=97.98  E-value=3.2e-06  Score=79.71  Aligned_cols=66  Identities=15%  Similarity=0.119  Sum_probs=54.0

Q ss_pred             CCCCCCcceeEEEecC---------------------------CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHH
Q 014778          342 AVHRNLLRLRGFCMTP---------------------------TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFF  394 (419)
Q Consensus       342 l~H~niv~l~g~~~~~---------------------------~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~  394 (419)
                      -+|||||++.+++.+.                           ...|+||.-.+. +|.+++..+        ..++..+
T Consensus       273 a~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~~--------~~s~r~~  343 (598)
T KOG4158|consen  273 AKHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWTR--------HRSYRTG  343 (598)
T ss_pred             CCCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhcC--------CCchHHH
Confidence            3699999999887541                           246888887766 899998865        4666777


Q ss_pred             HHHHHHHHHHHHHhhhccccceecC
Q 014778          395 IAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       395 ~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .-+..|+++|+.|||.+   +|.||
T Consensus       344 ~~~laQlLEav~hL~~h---gvAhR  365 (598)
T KOG4158|consen  344 RVILAQLLEAVTHLHKH---GVAHR  365 (598)
T ss_pred             HHHHHHHHHHHHHHHHc---cchhh
Confidence            88899999999999999   99998

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.96  E-value=1.8e-06  Score=85.76  Aligned_cols=123  Identities=28%  Similarity=0.445  Sum_probs=70.1

Q ss_pred             EEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCc
Q 014778           73 RVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNS  152 (419)
Q Consensus        73 ~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~  152 (419)
                      .++|..|.+.- +-..++.+++|..|+|..|.|. .+...+..+++|++|++++|.++.. . .+..++.|+.|++++|.
T Consensus        76 ~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i-~-~l~~l~~L~~L~l~~N~  151 (414)
T KOG0531|consen   76 ELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL-E-GLSTLTLLKELNLSGNL  151 (414)
T ss_pred             hhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc-c-chhhccchhhheeccCc
Confidence            34445555442 2334666667777777777776 3444366667777777777777633 2 24555667777777777


Q ss_pred             CcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCC
Q 014778          153 LMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLN  201 (419)
Q Consensus       153 l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~  201 (419)
                      ++ .+ ..+..+..|+.+++++|+++..-+. ...+..+..+.+.+|...
T Consensus       152 i~-~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  152 IS-DI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             ch-hc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence            65 22 2344566777777777766643331 234445555555555543

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=97.95  E-value=8.1e-06  Score=79.41  Aligned_cols=121  Identities=18%  Similarity=0.176  Sum_probs=89.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCC------CCCCcceeEEEecCCce
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAV------HRNLLRLRGFCMTPTER  360 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~------H~niv~l~g~~~~~~~~  360 (419)
                      ..|......|+|-|++|.+|... .|+.||||+++....  ..+.=..|+++|.++.      --+.++|+-.+...+..
T Consensus       432 ~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~--M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHL  509 (752)
T KOG0670|consen  432 SRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNEV--MHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHL  509 (752)
T ss_pred             ceeEEEeccccceeeeeeeccccCCCCeeEEEEeecchH--HhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhccee
Confidence            34666667899999999999964 588999999964322  2345578999999885      24788888888888999


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceec
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLF  418 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiH  418 (419)
                      +||+|-+.- +|.+.|+.-+...    .+....+..++.|+.-||..|-..   +|+|
T Consensus       510 ClVFE~Lsl-NLRevLKKyG~nv----GL~ikaVRsYaqQLflALklLK~c---~vlH  559 (752)
T KOG0670|consen  510 CLVFEPLSL-NLREVLKKYGRNV----GLHIKAVRSYAQQLFLALKLLKKC---GVLH  559 (752)
T ss_pred             EEEehhhhc-hHHHHHHHhCccc----ceeehHHHHHHHHHHHHHHHHHhc---Ceee
Confidence            999998765 8999998654211    344455666777777777777655   5665

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.87  E-value=7.3e-06  Score=87.71  Aligned_cols=104  Identities=33%  Similarity=0.488  Sum_probs=85.4

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      .+.++.|||++|.=-+.+|.++++|-+|++|+|+...++ .+|..+.+|..|.+||+..+.....+|..+..|.+|++|.
T Consensus       570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~  648 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR  648 (889)
T ss_pred             CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence            357899999998877899999999999999999999999 8999999999999999999987767777777799999999


Q ss_pred             cccCcC--cccCCccCcCCCCCcEEEc
Q 014778          148 LNNNSL--MGEIPRSLTNVNSLQVLDL  172 (419)
Q Consensus       148 l~~N~l--~g~~p~~l~~l~~L~~l~l  172 (419)
                      +-.-..  .+..-..+.++.+|+.+..
T Consensus       649 l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  649 LPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             eeccccccchhhHHhhhcccchhhhee
Confidence            876542  2223334555666666554

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=97.85  E-value=2.1e-05  Score=77.96  Aligned_cols=67  Identities=21%  Similarity=0.431  Sum_probs=60.4

Q ss_pred             HhcCCCCCCcceeEEEecCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 014778          339 ISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYS  411 (419)
Q Consensus       339 l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~  411 (419)
                      |+.+.|.|+.+++|.+.++...+.|.+|+..|+|.+.+.....      .++|.-...+.++|+.||+|||..
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~~------~~d~~F~~s~~rdi~~Gl~ylh~s   67 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNEDI------KLDYFFILSFIRDISKGLAYLHNS   67 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhcccc------CccHHHHHHHHHHHHHHHHHHhcC
Confidence            4578999999999999999999999999999999999987432      678888889999999999999977

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.82  E-value=4.9e-06  Score=82.61  Aligned_cols=105  Identities=31%  Similarity=0.370  Sum_probs=85.3

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..++..|+|.+|.|... ...+..+++|++|+|++|.|+...  .+..++.|+.|++++|.++ .+ ..+..+++|+.++
T Consensus        94 ~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~  168 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLD  168 (414)
T ss_pred             ccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcch-hc-cCCccchhhhccc
Confidence            35789999999999863 333788999999999999998543  3778888999999999997 33 4566789999999


Q ss_pred             cccCcCcccCCcc-CcCCCCCcEEEcccCcCC
Q 014778          148 LNNNSLMGEIPRS-LTNVNSLQVLDLSNNKLT  178 (419)
Q Consensus       148 l~~N~l~g~~p~~-l~~l~~L~~l~l~~N~l~  178 (419)
                      +++|.+...-+ . +..+.+|+.+++++|.+.
T Consensus       169 l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  169 LSYNRIVDIEN-DELSELISLEELDLGGNSIR  199 (414)
T ss_pred             CCcchhhhhhh-hhhhhccchHHHhccCCchh
Confidence            99999984433 2 578889999999999775

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.76  E-value=1.1e-05  Score=86.83  Aligned_cols=69  Identities=9%  Similarity=-0.018  Sum_probs=54.4

Q ss_pred             cCCC-CCCcceeEEE-------ecCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhcc
Q 014778          341 MAVH-RNLLRLRGFC-------MTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSC  412 (419)
Q Consensus       341 ~l~H-~niv~l~g~~-------~~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~  412 (419)
                      ..+| +||+++++++       ...+..+.++||++ ++|.++|+...      ..+++.++..++.||++||+|||++ 
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~L~~~l~~~~------~~~~~~~~~~i~~qi~~al~~lH~~-   99 (793)
T PLN00181         28 SLSHIDYVRSLLGSHKEGNLDGLDDDSIVRALECED-VSLRQWLDNPD------RSVDAFECFHVFRQIVEIVNAAHSQ-   99 (793)
T ss_pred             hhhHHHHHHHhhcccCCccccccccchhhhhhccCC-ccHHHHHhccc------ccccHHHHHHHHHHHHHHHHHHHhC-
Confidence            3445 5777888877       22345678889885 59999997532      1588899999999999999999999 


Q ss_pred             ccceecC
Q 014778          413 VSILLFC  419 (419)
Q Consensus       413 ~p~IiHR  419 (419)
                        +||||
T Consensus       100 --gIvHr  104 (793)
T PLN00181        100 --GIVVH  104 (793)
T ss_pred             --Ceeec
Confidence              99998

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=97.75  E-value=0.00013  Score=71.64  Aligned_cols=110  Identities=18%  Similarity=0.168  Sum_probs=80.3

Q ss_pred             ceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEec----CCceeEEeccCCC-CChhh
Q 014778          301 FGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT----PTERLLVYPFMVN-GSVAS  374 (419)
Q Consensus       301 fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~lv~e~~~~-GsL~~  374 (419)
                      -.+.||+.. .||..|..|+++.... ........-++.++++.|+|+|++..++..    +....+||+|.|+ ++|.+
T Consensus       289 ~~Ttyk~~s~~DG~~YvLkRlhg~r~-~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d  367 (655)
T KOG3741|consen  289 SITTYKATSNVDGNAYVLKRLHGDRD-QSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYD  367 (655)
T ss_pred             cceeEeeeeccCCceeeeeeeccccc-cCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHH
Confidence            357899985 4899999999943322 122234456788999999999999988764    4567899999986 57776


Q ss_pred             hhcCCc-cc-------cCCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 014778          375 CLRGMF-IV-------SGFPSFFSYLFFIAFVQSLIQSLHFAKYS  411 (419)
Q Consensus       375 ~L~~~~-~~-------~~~~~~~~~~~~~~i~~qia~gl~yLH~~  411 (419)
                      +--... ..       .......++...+.++.|+..||.++|+.
T Consensus       368 ~~F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHss  412 (655)
T KOG3741|consen  368 LYFANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSS  412 (655)
T ss_pred             HHccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            543221 11       23345678888999999999999999976

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=97.70  E-value=0.0003  Score=61.92  Aligned_cols=111  Identities=12%  Similarity=0.067  Sum_probs=73.7

Q ss_pred             CeeCcCCceEEEEEEeCC-------CCEEEEEEccccc------------c--------ccC-HHHHH----HHHHHHhc
Q 014778          294 NILGRGGFGKVYKGRLTD-------GSLVAVKRLKEER------------T--------QGG-ELQFQ----TEVEMISM  341 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~~-------g~~vAvK~l~~~~------------~--------~~~-~~~f~----~E~~~l~~  341 (419)
                      ..||.|.-+.||.|.-.+       +..+|||..+...            .        ... .+.+.    +|.+.|.+
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            468999999999998543       4799999874211            0        001 12233    78889988


Q ss_pred             CCCC--CCcceeEEEecCCceeEEeccCCCCChhh-hhcCCccccCCCcchhhHHHHHHHHHHHHHHHHh-hhcccccee
Q 014778          342 AVHR--NLLRLRGFCMTPTERLLVYPFMVNGSVAS-CLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFA-KYSCVSILL  417 (419)
Q Consensus       342 l~H~--niv~l~g~~~~~~~~~lv~e~~~~GsL~~-~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yL-H~~~~p~Ii  417 (419)
                      +...  ++.+++++    ...++||||+.++.+.. .+++.        .++..+...+..|++.+|.+| |..   +||
T Consensus        83 l~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd~--------~~~~~~~~~i~~~i~~~l~~l~H~~---glV  147 (197)
T cd05146          83 MQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKDA--------KLNDEEMKNAYYQVLSMMKQLYKEC---NLV  147 (197)
T ss_pred             HHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhcc--------ccCHHHHHHHHHHHHHHHHHHHHhC---Cee
Confidence            8643  45555553    46789999998754422 22221        233344566788999999999 777   899


Q ss_pred             cC
Q 014778          418 FC  419 (419)
Q Consensus       418 HR  419 (419)
                      |+
T Consensus       148 HG  149 (197)
T cd05146         148 HA  149 (197)
T ss_pred             cC
Confidence            96

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.66  E-value=1.6e-05  Score=83.96  Aligned_cols=119  Identities=17%  Similarity=0.138  Sum_probs=94.1

Q ss_pred             CCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHH--HhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEM--ISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~--l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ++...+.+|++.|=+|.||+.+.|. |.||++-.....-.-+.|.++++-  ...++|||.+++.-.-..+...|||-+|
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~kAAylvRqy  102 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQKVLVTDKAAYLVRQY  102 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHHHHHhhHHHHHHHHH
Confidence            4666688999999999999998886 889998544333344456555443  5567999999988776667778999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..+ +|+|.|.-++       .+...+..=||+|++.|+...|..   +|.|.
T Consensus       103 vkh-nLyDRlSTRP-------FL~~iEKkWiaFQLL~al~qcH~~---gVcHG  144 (1431)
T KOG1240|consen  103 VKH-NLYDRLSTRP-------FLVLIEKKWIAFQLLKALSQCHKL---GVCHG  144 (1431)
T ss_pred             Hhh-hhhhhhccch-------HHHHHHHHHHHHHHHHHHHHHHHc---Ccccc
Confidence            987 8999888665       566677777999999999999998   99995

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=97.66  E-value=0.00014  Score=73.45  Aligned_cols=95  Identities=17%  Similarity=0.113  Sum_probs=71.8

Q ss_pred             CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCChhhhhcCCccccCCCcch
Q 014778          310 TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFF  389 (419)
Q Consensus       310 ~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~  389 (419)
                      .++.+|.|...+.... .......+.++.|+.+|||||++++.....++..|||+|-+.  -|..++....         
T Consensus        35 ~~~~~vsVF~~~~~~~-~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~l~---------  102 (690)
T KOG1243|consen   35 ADGGPVSVFVYKRSNG-EVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKELG---------  102 (690)
T ss_pred             ccCCceEEEEEeCCCc-hhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHHhH---------
Confidence            4688899988854332 223346777889999999999999999999999999999875  3666666432         


Q ss_pred             hhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          390 SYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       390 ~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                       .....--+.||+.||.|||++|  +++|.
T Consensus       103 -~~~v~~Gl~qIl~AL~FL~~d~--~lvHg  129 (690)
T KOG1243|consen  103 -KEEVCLGLFQILAALSFLNDDC--NLVHG  129 (690)
T ss_pred             -HHHHHHHHHHHHHHHHHHhccC--Ceeec
Confidence             2223335899999999999776  68884

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=97.53  E-value=2.5e-05  Score=77.93  Aligned_cols=115  Identities=22%  Similarity=0.292  Sum_probs=92.6

Q ss_pred             eeCcCCceEEEEEE----eCCCCEEEEEEccccccccC-HHHHHHHHHHHhcCC-CCCCcceeEEEecCCceeEEeccCC
Q 014778          295 ILGRGGFGKVYKGR----LTDGSLVAVKRLKEERTQGG-ELQFQTEVEMISMAV-HRNLLRLRGFCMTPTERLLVYPFMV  368 (419)
Q Consensus       295 ~lG~G~fg~Vy~~~----~~~g~~vAvK~l~~~~~~~~-~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~e~~~  368 (419)
                      ++|+|.||.|+.+.    .+.|..+|.|.++....... ......|..++..++ ||.+|++...+..+...+++.+|..
T Consensus         1 vlg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~r   80 (612)
T KOG0603|consen    1 VLGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLR   80 (612)
T ss_pred             CCCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcc
Confidence            37899999998654    23577889998864332221 224556777888887 9999999999999999999999999


Q ss_pred             CCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          369 NGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       369 ~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|+|...+....       .+++.+...+...++-+++++|..   +||||
T Consensus        81 gg~lft~l~~~~-------~f~~~~~~~~~aelaLald~lh~l---~iiyr  121 (612)
T KOG0603|consen   81 GGDLFTRLSKEV-------MFDELDVAFYLAELALALDHLHKL---GIAYR  121 (612)
T ss_pred             cchhhhccccCC-------chHHHHHHHHHHHHHHHHhhcchh---HHHHh
Confidence            999999888765       688888888999999999999988   88876

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.25  E-value=0.0008  Score=65.39  Aligned_cols=69  Identities=17%  Similarity=0.364  Sum_probs=38.2

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEccc-CcccccCCccccCCCcCcEEecccc-ccCCCCCcccCCCCCCCEEE
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYS-NNISGKVPEELGNLTNLVSLDLYLN-NLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~-N~l~g~~p~~~~~l~~L~~L~ls~N-~l~g~~p~~~~~l~~L~~l~  147 (419)
                      .++.|++++|.|+. +| .+  ..+|++|.+++ +.++ .+|..+.  .+|++|++++| .+. .+|.      +|+.|+
T Consensus        53 ~l~~L~Is~c~L~s-LP-~L--P~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~  118 (426)
T PRK15386         53 ASGRLYIKDCDIES-LP-VL--PNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLE  118 (426)
T ss_pred             CCCEEEeCCCCCcc-cC-CC--CCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-cccc------ccceEE
Confidence            45677777776653 33 11  22577777766 4443 5555442  46777777776 333 4553      345555


Q ss_pred             cccCc
Q 014778          148 LNNNS  152 (419)
Q Consensus       148 l~~N~  152 (419)
                      ++.|.
T Consensus       119 L~~n~  123 (426)
T PRK15386        119 IKGSA  123 (426)
T ss_pred             eCCCC
Confidence            55544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.20  E-value=0.00058  Score=59.09  Aligned_cols=82  Identities=29%  Similarity=0.429  Sum_probs=48.9

Q ss_pred             CCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccC-CCCCCCEEEcccCcCc--ccCCccCcCCCCCcE
Q 014778           93 TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLG-KLSKLRFLRLNNNSLM--GEIPRSLTNVNSLQV  169 (419)
Q Consensus        93 ~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~-~l~~L~~l~l~~N~l~--g~~p~~l~~l~~L~~  169 (419)
                      .+...+||++|.+- .++ .|..++.|.+|.|++|+++ .|-+.+. -+++|..|.|.+|.+.  |.+ .-+..+++|++
T Consensus        42 d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~  117 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEY  117 (233)
T ss_pred             cccceecccccchh-hcc-cCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhc-chhccCCccce
Confidence            34556677777765 333 4566677777777777776 3333333 3456777777777664  122 22556667777


Q ss_pred             EEcccCcCC
Q 014778          170 LDLSNNKLT  178 (419)
Q Consensus       170 l~l~~N~l~  178 (419)
                      |.+-+|+.+
T Consensus       118 Ltll~Npv~  126 (233)
T KOG1644|consen  118 LTLLGNPVE  126 (233)
T ss_pred             eeecCCchh
Confidence            776666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.18  E-value=0.00023  Score=63.92  Aligned_cols=87  Identities=23%  Similarity=0.363  Sum_probs=58.9

Q ss_pred             hhCCCCCCEEEcccCcccccCCccccCCCcCcEEecccc--ccCCCCCcccCCCCCCCEEEcccCcCcccCCcc---CcC
Q 014778           89 LGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLN--NLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRS---LTN  163 (419)
Q Consensus        89 ~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N--~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~---l~~  163 (419)
                      .-.+..|+.|.+.+-.++ ++ ..+..|++|+.|++|.|  +.++.++.-..++++|++|+|++|++.  ++++   +..
T Consensus        39 ~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~  114 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKE  114 (260)
T ss_pred             cccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhh
Confidence            334455666666666665 22 24567788888888888  666666666667788888888888875  2444   345


Q ss_pred             CCCCcEEEcccCcCCC
Q 014778          164 VNSLQVLDLSNNKLTG  179 (419)
Q Consensus       164 l~~L~~l~l~~N~l~g  179 (419)
                      +.+|..|++.+|..+.
T Consensus       115 l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  115 LENLKSLDLFNCSVTN  130 (260)
T ss_pred             hcchhhhhcccCCccc
Confidence            5667778887776654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.13  E-value=0.00065  Score=58.80  Aligned_cols=102  Identities=29%  Similarity=0.395  Sum_probs=73.6

Q ss_pred             CEEEcccCcccccCCcccc-CCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEccc
Q 014778           96 QYLELYSNNISGKVPEELG-NLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSN  174 (419)
Q Consensus        96 ~~L~L~~N~l~g~~p~~~~-~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~  174 (419)
                      ++++|.+..+. .+ ..++ .+.+...+||++|.+. .+ ..|..++.|.+|.|++|+++..-|.--.-+++|..|.+.+
T Consensus        22 ~e~~LR~lkip-~i-enlg~~~d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   22 RELDLRGLKIP-VI-ENLGATLDQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             ccccccccccc-ch-hhccccccccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            45566655553 11 1222 2346778999999986 33 4577889999999999999966665445567899999999


Q ss_pred             CcCC--CCCCCCCCccccccccccCCCCC
Q 014778          175 NKLT--GDIPTNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       175 N~l~--g~~p~~~~~~~~~~~~~~~n~~~  201 (419)
                      |++.  |.+-....+..++.+.+-+|+..
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~  126 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVE  126 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchh
Confidence            9986  45555566778888888888765

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=97.13  E-value=0.0024  Score=59.54  Aligned_cols=126  Identities=17%  Similarity=0.203  Sum_probs=77.4

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCC----------CCCcceeEEEec
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVH----------RNLLRLRGFCMT  356 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H----------~niv~l~g~~~~  356 (419)
                      +...+.||.|+++.||.++.. +|+.+|||......  .....+++.+|.-....+.+          -.++-.+....-
T Consensus        14 l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i   93 (288)
T PF14531_consen   14 LVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRI   93 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEE
T ss_pred             EEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEE
Confidence            344578999999999999974 68999999884322  22235677777755555333          122222222211


Q ss_pred             ---------CC--------ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          357 ---------PT--------ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       357 ---------~~--------~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                               ..        ..+++|+-+ .+||.+++.--..............+..+..|+++.+++||+.   +|+|+
T Consensus        94 ~~~~~~~~~~~~~~~~~v~n~~~l~P~~-~~dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~---GlVHg  169 (288)
T PF14531_consen   94 PGKPPFFERGPGQSIYWVLNRFLLMPRA-QGDLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSY---GLVHG  169 (288)
T ss_dssp             TTS-SEEEECETTEEEEEESEEEEEE---SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TEEES
T ss_pred             cCCCcceecCCCCccceeehhhhccchh-hhcHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhc---ceEec
Confidence                     10        235677766 4588887652111111122455666677889999999999999   99995

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=97.10  E-value=0.0046  Score=57.39  Aligned_cols=117  Identities=7%  Similarity=-0.100  Sum_probs=77.0

Q ss_pred             CeeCcCCceEEEEEEeCCCCEEEEEEccccccc----------cCHHHHHHHHHHHhcCCCCCCc--ceeEEEec-----
Q 014778          294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQ----------GGELQFQTEVEMISMAVHRNLL--RLRGFCMT-----  356 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~----------~~~~~f~~E~~~l~~l~H~niv--~l~g~~~~-----  356 (419)
                      +++-+.....|++..+ +|+.+.||+.....-.          .....+.+|...+.++...+|.  +++++...     
T Consensus        28 e~v~~~~~rrvvr~~~-~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~  106 (268)
T PRK15123         28 EVFRELEGRRTLRFEL-AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPA  106 (268)
T ss_pred             cEEecCCCceEEEEEE-CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCc
Confidence            4444444455778777 5778999976322100          1112478899888877544443  44666643     


Q ss_pred             CCceeEEeccCCCC-ChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          357 PTERLLVYPFMVNG-SVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       357 ~~~~~lv~e~~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ....++|+|++++- +|.+++.....     ...+......++.+++..+.-||+.   +|+|+
T Consensus       107 ~~~s~LVte~l~~~~sL~~~~~~~~~-----~~~~~~~~~~ll~~la~~i~~LH~~---Gi~Hg  162 (268)
T PRK15123        107 TRTSFIITEDLAPTISLEDYCADWAT-----NPPDPRLKRMLIKRVATMVRDMHAA---GINHR  162 (268)
T ss_pred             cceeEEEEeeCCCCccHHHHHHhhcc-----cCCCHHHHHHHHHHHHHHHHHHHHC---cCccC
Confidence            23468999999976 79888753211     0233445667899999999999999   99996

>PLN02876 acyl-CoA dehydrogenase

Probab=97.02  E-value=0.0041  Score=67.29  Aligned_cols=110  Identities=7%  Similarity=0.075  Sum_probs=77.3

Q ss_pred             CCeeCcCCceEEEEEEeCCC---CEEEEEEccccccccCHHHHHHHHHHHhcCC-CCCC--cceeEEEecC---CceeEE
Q 014778          293 RNILGRGGFGKVYKGRLTDG---SLVAVKRLKEERTQGGELQFQTEVEMISMAV-HRNL--LRLRGFCMTP---TERLLV  363 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~~~g---~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H~ni--v~l~g~~~~~---~~~~lv  363 (419)
                      .+.++.|.+..+|+....++   ..+++|+............+.+|.++|..+. |.++  .+++++|.+.   +..|+|
T Consensus        43 v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~flV  122 (822)
T PLN02876         43 VSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAFYI  122 (822)
T ss_pred             EEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCceEE
Confidence            36688999999999887553   3677777643222223457889999999985 6765  6778888764   457899


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYS  411 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~  411 (419)
                      |||+++-.+.+    ..     ...++..++..++.++++.|..||+-
T Consensus       123 ME~v~G~~~~~----~~-----~~~~~~~~r~~l~~~l~~~La~LH~v  161 (822)
T PLN02876        123 MEYLEGRIFVD----PK-----LPGVAPERRRAIYRATAKVLAALHSA  161 (822)
T ss_pred             EEecCCcccCC----cc-----CCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            99999744321    10     01244556778899999999999963

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.96  E-value=0.0016  Score=63.34  Aligned_cols=95  Identities=27%  Similarity=0.377  Sum_probs=56.0

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccC-cccccCCccccCCCcCcEEeccccccC--CCCCcccCCC-----
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSN-NISGKVPEELGNLTNLVSLDLYLNNLN--GPIPTTLGKL-----  140 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N-~l~g~~p~~~~~l~~L~~L~ls~N~l~--g~~p~~~~~l-----  140 (419)
                      .+|+.|+++++.--..+|..+.  .+|++|++++| .+. .+|+.      |+.|+++.|...  +.+|.++..|     
T Consensus        72 ~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~s------Le~L~L~~n~~~~L~~LPssLk~L~I~~~  142 (426)
T PRK15386         72 NELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPES------VRSLEIKGSATDSIKNVPNGLTSLSINSY  142 (426)
T ss_pred             CCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccccc------cceEEeCCCCCcccccCcchHhheecccc
Confidence            3689999987443345565553  58899999988 554 56654      566666665531  3555544332     


Q ss_pred             -------------CCCCEEEcccCcCcccCCccCcCCCCCcEEEcccC
Q 014778          141 -------------SKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNN  175 (419)
Q Consensus       141 -------------~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N  175 (419)
                                   ++|++|++++|... .+|..+-  .+|+.|+++.|
T Consensus       143 n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        143 NPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             ccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence                         25666666666543 2333222  35666666655

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=96.83  E-value=0.0071  Score=52.04  Aligned_cols=119  Identities=8%  Similarity=0.056  Sum_probs=83.8

Q ss_pred             CCCeeCcCCceEEEEEEeCCCCEEEEEEccc-ccc------ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          292 NRNILGRGGFGKVYKGRLTDGSLVAVKRLKE-ERT------QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       292 ~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~-~~~------~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ....+-+|+-+.|+++.+. |+...||.=.. ...      .-..+...+|++.+.+++--.|.-..=++.+...-.|+|
T Consensus        11 ~l~likQGAEArv~~~~~~-Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~M   89 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSFS-GEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYM   89 (229)
T ss_pred             cceeeeccceeeEeeeccC-CceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEE
Confidence            3477889999999999985 66666664311 111      112346789999999987767776666777777778999


Q ss_pred             ccCCC-CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVN-GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++ -++.+++.......     ..-.....++.+|-+-+.-||.+   .|||.
T Consensus        90 E~~~g~~~vk~~i~~~~~~~-----~~d~~~~~~~~~iG~~igklH~n---diiHG  137 (229)
T KOG3087|consen   90 EFIDGASTVKDFILSTMEDE-----SEDEGLAELARRIGELIGKLHDN---DIIHG  137 (229)
T ss_pred             EeccchhHHHHHHHHHccCc-----ccchhHHHHHHHHHHHHHHhhhC---Ceecc
Confidence            99976 37888887543211     11112256899999999999999   99994

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.83  E-value=0.00053  Score=63.98  Aligned_cols=133  Identities=20%  Similarity=0.301  Sum_probs=89.4

Q ss_pred             CCEEEEEcCCCCccccchhh----hhCCCCCCEEEcccCcccc----c---------CCccccCCCcCcEEeccccccCC
Q 014778           69 NSVTRVDLGNANLSGQLVSQ----LGQLTNLQYLELYSNNISG----K---------VPEELGNLTNLVSLDLYLNNLNG  131 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~----~~~l~~L~~L~L~~N~l~g----~---------~p~~~~~l~~L~~L~ls~N~l~g  131 (419)
                      ++++.||||.|-|.-.-++.    |..+..|++|+|.||.+.-    .         .-.-+++-+.|+.++.+.|++..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            37999999999987554443    4567889999999998861    1         22335566789999999999852


Q ss_pred             C----CCcccCCCCCCCEEEcccCcCc--cc--CCccCcCCCCCcEEEcccCcCCCC--CC---CCCCccccccccccCC
Q 014778          132 P----IPTTLGKLSKLRFLRLNNNSLM--GE--IPRSLTNVNSLQVLDLSNNKLTGD--IP---TNGSFSLFTPISFANN  198 (419)
Q Consensus       132 ~----~p~~~~~l~~L~~l~l~~N~l~--g~--~p~~l~~l~~L~~l~l~~N~l~g~--~p---~~~~~~~~~~~~~~~n  198 (419)
                      .    +...+...+.|+.+.+..|.+.  |.  +-..+..+++|++||+.+|-|+-.  +-   ....|+.++.++++..
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            2    2234556678889999888774  11  223467889999999999988732  11   1233455666666655


Q ss_pred             CCC
Q 014778          199 QLN  201 (419)
Q Consensus       199 ~~~  201 (419)
                      .+.
T Consensus       252 ll~  254 (382)
T KOG1909|consen  252 LLE  254 (382)
T ss_pred             ccc
Confidence            443

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.78  E-value=0.0009  Score=66.75  Aligned_cols=126  Identities=12%  Similarity=0.086  Sum_probs=91.8

Q ss_pred             HHHhhCCCCCCeeCcCCceEEEEEEeC--CCCEEEEEEccccccccCHHH-HHHHHHHHhcC-CCCCCcceeEEEecCCc
Q 014778          284 QVATDNFSNRNILGRGGFGKVYKGRLT--DGSLVAVKRLKEERTQGGELQ-FQTEVEMISMA-VHRNLLRLRGFCMTPTE  359 (419)
Q Consensus       284 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~--~g~~vAvK~l~~~~~~~~~~~-f~~E~~~l~~l-~H~niv~l~g~~~~~~~  359 (419)
                      ...+.+|.....||.|.|+.|++...+  ++..+++|.+.........+. -..|+.+...+ .|.+.++....+.....
T Consensus       261 s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~  340 (524)
T KOG0601|consen  261 SCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQ  340 (524)
T ss_pred             eeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCcccccc
Confidence            345567888899999999999998753  678999999864432222222 23455555544 58888887777777777


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++--||+++|++...+.-       ...++....+++..|++.++.++|+.   .++|+
T Consensus       341 ~~ip~e~~~~~s~~l~~~~-------~~~~d~~~~~~~~~q~~~~l~~i~s~---~~~~~  390 (524)
T KOG0601|consen  341 GYIPLEFCEGGSSSLRSVT-------SQMLDEDPRLRLTAQILTALNVIHSK---LFVHL  390 (524)
T ss_pred             ccCchhhhcCcchhhhhHH-------HHhcCcchhhhhHHHHHhccccccch---hhhcc
Confidence            8899999999998766521       12566677788899999999999977   77774

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.76  E-value=0.00039  Score=63.55  Aligned_cols=88  Identities=31%  Similarity=0.366  Sum_probs=59.5

Q ss_pred             CCCCCCEEEcccCccccc--CCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcc-cCCccCcCCCCC
Q 014778           91 QLTNLQYLELYSNNISGK--VPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMG-EIPRSLTNVNSL  167 (419)
Q Consensus        91 ~l~~L~~L~L~~N~l~g~--~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g-~~p~~l~~l~~L  167 (419)
                      ..+.+++|||.+|.|+..  |-.-+-+|+.|++|+||.|.++..|-..-..+.+|++|-|.+-.+.- ..-..+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            356788888888888732  33335578888888888888874433222355678888888777654 334456777778


Q ss_pred             cEEEcccCcCC
Q 014778          168 QVLDLSNNKLT  178 (419)
Q Consensus       168 ~~l~l~~N~l~  178 (419)
                      +.|.+|.|++.
T Consensus       149 telHmS~N~~r  159 (418)
T KOG2982|consen  149 TELHMSDNSLR  159 (418)
T ss_pred             hhhhhccchhh
Confidence            88888887543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.75  E-value=0.00057  Score=37.15  Aligned_cols=12  Identities=58%  Similarity=0.520  Sum_probs=4.9

Q ss_pred             CcEEeccccccC
Q 014778          119 LVSLDLYLNNLN  130 (419)
Q Consensus       119 L~~L~ls~N~l~  130 (419)
                      |++|||++|+|+
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            334444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=96.68  E-value=0.015  Score=50.07  Aligned_cols=108  Identities=10%  Similarity=0.137  Sum_probs=79.1

Q ss_pred             CeeCcCCceEEEEEEeCCCCEEEEEE-cccccccc------CHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          294 NILGRGGFGKVYKGRLTDGSLVAVKR-LKEERTQG------GELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~~g~~vAvK~-l~~~~~~~------~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ..+++|+-+.+|.+.+. |..+.+|. +.......      ....-.+|.+++++++--.|-...=|..+++...|+|||
T Consensus         2 ~~i~~GAEa~i~~~~~~-g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~   80 (204)
T COG3642           2 DLIKQGAEAIIYLTDFL-GLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEY   80 (204)
T ss_pred             chhhCCcceeEEeeecc-CcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEE
Confidence            35788999999999774 43455553 22111111      123467899999998877777777788888889999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++-.|.+.+....              ..++..|-.-+.=||..   +|||.
T Consensus        81 I~G~~lkd~l~~~~--------------~~~~r~vG~~vg~lH~~---givHG  116 (204)
T COG3642          81 IEGELLKDALEEAR--------------PDLLREVGRLVGKLHKA---GIVHG  116 (204)
T ss_pred             eCChhHHHHHHhcc--------------hHHHHHHHHHHHHHHhc---CeecC
Confidence            99988888887641              23677888888889999   99994

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.65  E-value=0.0015  Score=58.81  Aligned_cols=90  Identities=23%  Similarity=0.313  Sum_probs=65.3

Q ss_pred             cCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccC--cCcccCCccCcCCCCCcEEEcccCcCCC--CCCC
Q 014778          108 KVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN--SLMGEIPRSLTNVNSLQVLDLSNNKLTG--DIPT  183 (419)
Q Consensus       108 ~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N--~l~g~~p~~l~~l~~L~~l~l~~N~l~g--~~p~  183 (419)
                      .+..-.-.+..|+.|.+.+-.++ ++ ..+-.|++|+.|+++.|  ..++.++.....+++|+++++++|+++-  .++.
T Consensus        34 ~~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p  111 (260)
T KOG2739|consen   34 KLGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP  111 (260)
T ss_pred             Ccccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence            35555556677778878777776 22 34667889999999999  6677777777778999999999999873  3444


Q ss_pred             CCCccccccccccCCC
Q 014778          184 NGSFSLFTPISFANNQ  199 (419)
Q Consensus       184 ~~~~~~~~~~~~~~n~  199 (419)
                      ...+.++..+++.++.
T Consensus       112 l~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCS  127 (260)
T ss_pred             hhhhcchhhhhcccCC
Confidence            4555666666666553

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.62  E-value=0.0008  Score=36.56  Aligned_cols=22  Identities=45%  Similarity=0.906  Sum_probs=15.7

Q ss_pred             CCCEEEcccCcccccCCccccCC
Q 014778           94 NLQYLELYSNNISGKVPEELGNL  116 (419)
Q Consensus        94 ~L~~L~L~~N~l~g~~p~~~~~l  116 (419)
                      +|++|||++|+|+ .+|++|++|
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT-
T ss_pred             CccEEECCCCcCE-eCChhhcCC
Confidence            4678888888888 777776543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.62  E-value=4.5e-05  Score=67.17  Aligned_cols=87  Identities=18%  Similarity=0.254  Sum_probs=47.8

Q ss_pred             hhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCC
Q 014778           88 QLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSL  167 (419)
Q Consensus        88 ~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L  167 (419)
                      ++......+.|||+.|++- .+-..|.-++.|..||++.|.+. .+|..++.+..+..+++.+|+++ ..|.+++.++.+
T Consensus        37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            3444445555555555554 34444555555555555555554 55555555555555555555554 555556666666


Q ss_pred             cEEEcccCcC
Q 014778          168 QVLDLSNNKL  177 (419)
Q Consensus       168 ~~l~l~~N~l  177 (419)
                      +++++..|.|
T Consensus       114 k~~e~k~~~~  123 (326)
T KOG0473|consen  114 KKNEQKKTEF  123 (326)
T ss_pred             chhhhccCcc
Confidence            6555555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	419
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		1e-67
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		5e-63
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-14
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-14
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		2e-13
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		2e-13
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		3e-11
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		3e-11
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		5e-11
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		1e-09
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-08
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-06
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		1e-06
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		1e-06
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		1e-06
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		2e-06
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		2e-06
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-06
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		4e-06
2yjs_A	342	Structure Of C1156y Mutant Anaplastic Lymphoma Kina		5e-06
4fnw_A	327	Crystal Structure Of The Apo F1174l Anaplastic Lymp		6e-06
2yjr_A	342	Structure Of F1174l Mutant Anaplastic Lymphoma Kina		6e-06
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		6e-06
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		6e-06
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		6e-06
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		6e-06
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		6e-06
2yhv_A	342	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		7e-06
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		7e-06
2yfx_A	327	Structure Of L1196m Mutant Anaplastic Lymphoma Kina		7e-06
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		7e-06
2xp2_A	327	Structure Of The Human Anaplastic Lymphoma Kinase I		7e-06
4fnx_A	327	Crystal Structure Of The Apo R1275q Anaplastic Lymp		8e-06
4dce_A	333	Crystal Structure Of Human Anaplastic Lymphoma Kina		8e-06
3l9p_A	367	Crystal Structure Of The Anaplastic Lymphoma Kinase		8e-06
2xb7_A	315	Structure Of Human Anaplastic Lymphoma Kinase In Co		8e-06
4fnz_A	327	Crystal Structure Of Human Anaplastic Lymphoma Kina		8e-06
3aox_A	344	X-Ray Crystal Structure Of Human Anaplastic Lymphom		8e-06
4fob_A	353	Crystal Structure Of Human Anaplastic Lymphoma Kina		9e-06
3lct_A	344	Crystal Structure Of The Anaplastic Lymphoma Kinase		9e-06
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		1e-05
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		1e-05
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		1e-05
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		2e-05
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		2e-05
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		2e-05
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-05
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		2e-05
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		2e-05
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-05
1fvr_A	327	Tie2 Kinase Domain Length = 327		2e-05
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		2e-05
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		2e-05
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		2e-05
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-05
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		3e-05
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		5e-05
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		5e-05
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		5e-05
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		6e-05
3f88_A	349	Glycogen Synthase Kinase 3beta Inhibitor Complex Le		7e-05
3f7z_A	350	X-ray Co-crystal Structure Of Glycogen Synthase Kin		7e-05
3sd0_A	350	Identification Of A Glycogen Synthase Kinase-3b Inh		7e-05
3zdi_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		7e-05
1r0e_A	391	Glycogen Synthase Kinase-3 Beta In Complex With 3-I		7e-05
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		7e-05
2o5k_A	372	Crystal Structure Of Gsk3beta In Complex With A Ben		7e-05
2ow3_A	352	Glycogen Synthase Kinase-3 Beta In Complex With Bis		7e-05
1gng_A	378	Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With		7e-05
4afj_A	367	5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selec		8e-05
3zrk_A	371	Identification Of 2-(4-Pyridyl)thienopyridinones As		8e-05
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		8e-05
3gb2_A	353	Gsk3beta Inhibitor Complex Length = 353		8e-05
1q5k_A	414	Crystal Structure Of Glycogen Synthase Kinase 3 In		8e-05
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		8e-05
4dit_A	382	Crystal Structure Of Gsk3beta In Complex With A Imi		9e-05
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		9e-05
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		9e-05
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		9e-05
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		9e-05
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		9e-05
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		9e-05
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		1e-04
1i09_A	420	Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Len		1e-04
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		1e-04
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		1e-04
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		1e-04
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		1e-04
3say_A	430	Crystal Structure Of Human Glycogen Synthase Kinase		1e-04
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		1e-04
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		1e-04
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		1e-04
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		1e-04
1pyx_A	422	Gsk-3 Beta Complexed With Amp-Pnp Length = 422		1e-04
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		1e-04
1q3d_A	424	Gsk-3 Beta Complexed With Staurosporine Length = 42		1e-04
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		1e-04
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		1e-04
4acc_A	465	Gsk3b In Complex With Inhibitor Length = 465		1e-04
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		1e-04
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		1e-04
2wtv_A	285	Aurora-A Inhibitor Structure Length = 285		1e-04
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		1e-04
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		1e-04
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		1e-04
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		1e-04
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		1e-04
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		1e-04
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		1e-04
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		1e-04
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		1e-04
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		1e-04
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		1e-04
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		1e-04
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		1e-04
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		1e-04
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		1e-04
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		1e-04
2y4i_B	319	Ksr2-Mek1 Heterodimer Length = 319		1e-04
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		1e-04
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		1e-04
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		2e-04
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		2e-04
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		2e-04
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		2e-04
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		2e-04
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		2e-04
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		2e-04
3coh_A	268	Crystal Structure Of Aurora-A In Complex With A Pen		2e-04
2xne_A	272	Structure Of Aurora-A Bound To An Imidazopyrazine I		3e-04
3unz_A	279	Aurora A In Complex With Rpm1679 Length = 279		3e-04
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		3e-04
2w1c_A	275	Structure Determination Of Aurora Kinase In Complex		3e-04
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		3e-04
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		3e-04
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		3e-04
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		3e-04
2w1d_A	275	Structure Determination Of Aurora Kinase In Complex		3e-04
3o50_A	267	Crystal Structure Of Benzamide 9 Bound To Auroraa L		3e-04
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		3e-04
1ol5_A	282	Structure Of Aurora-A 122-403, Phosphorylated On Th		3e-04
3h0y_A	268	Aurora A In Complex With A Bisanilinopyrimidine Len		3e-04
1ol6_A	282	Structure Of Unphosphorylated D274n Mutant Of Auror		3e-04
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		3e-04
2dwb_A	285	Aurora-A Kinase Complexed With Amppnp Length = 285		3e-04
3ha6_A	268	Crystal Structure Of Aurora A In Complex With Tpx2		3e-04
2x6d_A	285	Aurora-A Bound To An Inhibitor Length = 285		3e-04
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		3e-04
3e5a_A	268	Crystal Structure Of Aurora A In Complex With Vx-68		3e-04
2xru_A	280	Aurora-A T288e Complexed With Pha-828300 Length = 2		3e-04
2xng_A	283	Structure Of Aurora-A Bound To A Selective Imidazop		3e-04
2j50_A	280	Structure Of Aurora-2 In Complex With Pha-739358 Le		3e-04
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		3e-04
3nrm_A	283	Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibito		4e-04
2wqe_A	262	Structure Of S155r Aurora-A Somatic Mutant Length =		4e-04
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		4e-04
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		4e-04
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		5e-04
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		5e-04
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		8e-04
2rei_A	318	Kinase Domain Of Human Ephrin Type-a Receptor 7 (ep		8e-04
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		9e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score =  253 bits (646), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 117/127 (92%), Positives = 124/127 (97%)
Query: 251 RKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLT 310
           R++KP+DHFFDVPAEEDPEVHLGQLKRFSLRELQVA+DNFSN+NILGRGGFGKVYKGRL 
Sbjct: 1   RRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLA 60
Query: 311 DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNG 370
           DG+LVAVKRLKEER QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP+M NG
Sbjct: 61  DGTLVAVKRLKEERXQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANG 120
Query: 371 SVASCLR 377
           SVASCLR
Sbjct: 121 SVASCLR 127

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score =  238 bits (607), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 112/119 (94%), Positives = 115/119 (96%)
Query: 259 FFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVK 318
           FFDVPAEEDPEVHLGQLKRFSLRELQVA+DNF N+NILGRGGFGKVYKGRL DG LVAVK
Sbjct: 1   FFDVPAEEDPEVHLGQLKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVK 60
Query: 319 RLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           RLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP+M NGSVASCLR
Sbjct: 61  RLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLR 119

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 59/89 (66%)
Query: 95  LQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLM 154
           LQ L L +N  +GK+P  L N + LVSL L  N L+G IP++LG LSKLR L+L  N L 
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 155 GEIPRSLTNVNSLQVLDLSNNKLTGDIPT 183
           GEIP+ L  V +L+ L L  N LTG+IP+
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPS 481

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 59/89 (66%)
Query: 95  LQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLM 154
           LQ L L +N  +GK+P  L N + LVSL L  N L+G IP++LG LSKLR L+L  N L 
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 155 GEIPRSLTNVNSLQVLDLSNNKLTGDIPT 183
           GEIP+ L  V +L+ L L  N LTG+IP+
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPS 484

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 66/102 (64%), Gaps = 1/102 (0%)
Query: 277 RFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEV 336
           R  L +L+ AT+NF ++ ++G G FGKVYKG L DG+ VA+KR   E +Q G  +F+TE+
Sbjct: 28  RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQ-GIEEFETEI 86
Query: 337 EMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRG 378
           E +S   H +L+ L GFC    E +L+Y +M NG++   L G
Sbjct: 87  ETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYG 128

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 66/102 (64%), Gaps = 1/102 (0%)
Query: 277 RFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEV 336
           R  L +L+ AT+NF ++ ++G G FGKVYKG L DG+ VA+KR   E +Q G  +F+TE+
Sbjct: 28  RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQ-GIEEFETEI 86
Query: 337 EMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRG 378
           E +S   H +L+ L GFC    E +L+Y +M NG++   L G
Sbjct: 87  ETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYG 128

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 13/122 (10%)
Query: 269 EVHLGQLKRFSLRELQVATDNFSNR------NILGRGGFGKVYKGRLTDGSLVAVKRLK- 321
           EV   +   FS  EL+  T+NF  R      N +G GGFG VYKG + + + VAVK+L  
Sbjct: 6   EVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNN-TTVAVKKLAA 64
Query: 322 --EERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSV---ASCL 376
             +  T+  + QF  E+++++   H NL+ L GF     +  LVY +M NGS+    SCL
Sbjct: 65  MVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCL 124
Query: 377 RG 378
            G
Sbjct: 125 DG 126

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 66/122 (54%), Gaps = 13/122 (10%)
Query: 269 EVHLGQLKRFSLRELQVATDNFSNR------NILGRGGFGKVYKGRLTDGSLVAVKRLK- 321
           EV   +   FS  EL+  T+NF  R      N +G GGFG VYKG + + + VAVK+L  
Sbjct: 6   EVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNN-TTVAVKKLAA 64
Query: 322 --EERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSV---ASCL 376
             +  T+  + QF  E+++++   H NL+ L GF     +  LVY +M NGS+    SCL
Sbjct: 65  MVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCL 124
Query: 377 RG 378
            G
Sbjct: 125 DG 126

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 13/113 (11%)
Query: 278 FSLRELQVATDNFSNR------NILGRGGFGKVYKGRLTDGSLVAVKRLK---EERTQGG 328
           FS  EL+  T+NF  R      N +G GGFG VYKG + + + VAVK+L    +  T+  
Sbjct: 9   FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNN-TTVAVKKLAAMVDITTEEL 67
Query: 329 ELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSV---ASCLRG 378
           + QF  E+++++   H NL+ L GF     +  LVY +M NGS+    SCL G
Sbjct: 68  KQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDG 120

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 60/113 (53%), Gaps = 13/113 (11%)
Query: 278 FSLRELQVATDNFSNR------NILGRGGFGKVYKGRLTDGSLVAVKRLK---EERTQGG 328
           FS  EL+  T+NF  R      N  G GGFG VYKG + + + VAVK+L    +  T+  
Sbjct: 6   FSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNN-TTVAVKKLAAMVDITTEEL 64
Query: 329 ELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSV---ASCLRG 378
           + QF  E+++ +   H NL+ L GF     +  LVY +  NGS+    SCL G
Sbjct: 65  KQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVYXPNGSLLDRLSCLDG 117

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 35/187 (18%)
Query: 29  EGDALNALKTNLADPNNVLQSWDATLVNPC--TWFHVTCNSENSVTRV---DL------- 76
           +  AL  +K +L +P   L SW  T  + C  TW  V C+++    RV   DL       
Sbjct: 7   DKQALLQIKKDLGNPT-TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64
Query: 77  --------------------GNANXXXXXXXXXXXXTNLQYLELYSNNISGKVPEELGNL 116
                               G  N            T L YL +   N+SG +P+ L  +
Sbjct: 65  PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124
Query: 117 TNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSL-QVLDLSNN 175
             LV+LD   N L+G +P ++  L  L  +  + N + G IP S  + + L   + +S N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184
Query: 176 KLTGDIP 182
           +LTG IP
Sbjct: 185 RLTGKIP 191

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 98  LELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKL-RFLRLNNNSLMGE 156
           L+   N +SG +P  + +L NLV +    N ++G IP + G  SKL   + ++ N L G+
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189
Query: 157 IPRSLTNVNSLQVLDLSNNKLTGD 180
           IP +  N+N L  +DLS N L GD
Sbjct: 190 IPPTFANLN-LAFVDLSRNMLEGD 212

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 294 NILGRGGFGKVYKGRLT----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++G G FG+V +GRL       S VA+K LK   T+    +F +E  ++    H N++R
Sbjct: 22  EVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIR 81
Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLR---GMFIV-------SGFPSFFSYLFFIAFVQ 399
           L G        +++  FM NG++ S LR   G F V        G  S   YL  +++V 
Sbjct: 82  LEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSYVH 141

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 296 LGRGGFGKVYKGRL------TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
           LG G FGKV+           D  LVAVK LKE  ++     FQ E E+++M  H++++R
Sbjct: 26  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA-SESARQDFQREAELLTMLQHQHIVR 84
Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLR 377
             G C      L+V+ +M +G +   LR
Sbjct: 85  FFGVCTEGRPLLMVFEYMRHGDLNRFLR 112

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 296 LGRGGFGKVYKGRL------TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
           LG G FGKV+           D  LVAVK LKE  ++     FQ E E+++M  H++++R
Sbjct: 20  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA-SESARQDFQREAELLTMLQHQHIVR 78
Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLR 377
             G C      L+V+ +M +G +   LR
Sbjct: 79  FFGVCTEGRPLLMVFEYMRHGDLNRFLR 106

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 296 LGRGGFGKVYKGRL------TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
           LG G FGKV+           D  LVAVK LKE  ++     FQ E E+++M  H++++R
Sbjct: 49  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA-SESARQDFQREAELLTMLQHQHIVR 107
Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLR 377
             G C      L+V+ +M +G +   LR
Sbjct: 108 FFGVCTEGRPLLMVFEYMRHGDLNRFLR 135

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 294 NILGRGGFGKVYKGRLT----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++G G FG+V +GRL       S VA+K LK   T+    +F +E  ++    H N++R
Sbjct: 20  EVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHPNIIR 79
Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLR---GMFIV-------SGFPSFFSYLFFIAFVQ 399
           L G        +++  FM NG++ S LR   G F V        G  S   YL  +++V 
Sbjct: 80  LEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEMSYVH 139

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 64/155 (41%), Gaps = 20/155 (12%)
Query: 259 FFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSL---- 314
           F D    EDP   + +  +      ++   N S   ++G G FG+V  GRL   S     
Sbjct: 22  FVDPHTFEDPTQTVHEFAK------ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEIS 75
Query: 315 VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVAS 374
           VA+K LK   T+     F  E  ++    H N++RL G        ++V  +M NGS+ S
Sbjct: 76  VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDS 135
Query: 375 CLR---GMFIV-------SGFPSFFSYLFFIAFVQ 399
            LR     F V        G  S   YL  + FV 
Sbjct: 136 FLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGFVH 170

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 64/155 (41%), Gaps = 20/155 (12%)
Query: 259 FFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSL---- 314
           F D    EDP   + +  +      ++   N S   ++G G FG+V  GRL   S     
Sbjct: 22  FVDPHTYEDPTQTVHEFAK------ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEIS 75
Query: 315 VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVAS 374
           VA+K LK   T+     F  E  ++    H N++RL G        ++V  +M NGS+ S
Sbjct: 76  VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDS 135
Query: 375 CLR---GMFIV-------SGFPSFFSYLFFIAFVQ 399
            LR     F V        G  S   YL  + +V 
Sbjct: 136 FLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVH 170

>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLT----DGS--LVAVKRLKEERTQGGELQFQTEVE 337
           +V   N +    LG G FG+VY+G+++    D S   VAVK L E  ++  EL F  E  
Sbjct: 41  EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVYSEQDELDFLMEAL 100
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +IS   H+N++R  G  +    R ++   M  G + S LR
Sbjct: 101 IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLR 140

>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 6/130 (4%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLT----DGS--LVAVKRLKEERTQGGELQFQTEVE 337
           +V   N +    LG G FG+VY+G+++    D S   VAVK L E  ++  EL F  E  
Sbjct: 27  EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 86
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAF 397
           +IS   H+N++R  G  +    R ++   M  G + S LR        PS  + L  +  
Sbjct: 87  IISKLNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHV 146
Query: 398 VQSLIQSLHF 407
            + +     +
Sbjct: 147 ARDIACGCQY 156

>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLT----DGS--LVAVKRLKEERTQGGELQFQTEVE 337
           +V   N +    LG G FG+VY+G+++    D S   VAVK L E  ++  EL F  E  
Sbjct: 41  EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 100
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +IS   H+N++R  G  +    R ++   M  G + S LR
Sbjct: 101 IISKLNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLR 140

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 291 SNRNILGRGGFGKVYKGRLTDGS-----LVAVKRLKEERTQGGELQFQTEVEMISMAVHR 345
           + + ++G G FG+VYKG L   S      VA+K LK   T+   + F  E  ++    H 
Sbjct: 47  TRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHH 106
Query: 346 NLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           N++RL G        +++  +M NG++   LR
Sbjct: 107 NIIRLEGVISKYKPMMIITEYMENGALDKFLR 138

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 64/155 (41%), Gaps = 20/155 (12%)
Query: 259 FFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSL---- 314
           F D    EDP   + +  +      ++   N S   ++G G FG+V  GRL   S     
Sbjct: 22  FVDPHTFEDPTQTVHEFAK------ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEIS 75
Query: 315 VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVAS 374
           VA+K LK   T+     F  E  ++    H N++RL G        ++V  +M NGS+ S
Sbjct: 76  VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDS 135
Query: 375 CLR---GMFIV-------SGFPSFFSYLFFIAFVQ 399
            LR     F V        G  S   YL  + +V 
Sbjct: 136 FLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVH 170

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 64/155 (41%), Gaps = 20/155 (12%)
Query: 259 FFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSL---- 314
           F D    EDP   + +  +      ++   N S   ++G G FG+V  GRL   S     
Sbjct: 22  FVDPHTFEDPTQTVHEFAK------ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEIS 75
Query: 315 VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVAS 374
           VA+K LK   T+     F  E  ++    H N++RL G        ++V  +M NGS+ S
Sbjct: 76  VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDS 135
Query: 375 CLR---GMFIV-------SGFPSFFSYLFFIAFVQ 399
            LR     F V        G  S   YL  + +V 
Sbjct: 136 FLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVH 170

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 64/155 (41%), Gaps = 20/155 (12%)
Query: 259 FFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSL---- 314
           + D    EDP   + +  +      ++   N S   ++G G FG+V  GRL   S     
Sbjct: 22  YVDPHTYEDPTQTVHEFAK------ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEIS 75
Query: 315 VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVAS 374
           VA+K LK   T+     F  E  ++    H N++RL G        ++V  +M NGS+ S
Sbjct: 76  VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDS 135
Query: 375 CLR---GMFIV-------SGFPSFFSYLFFIAFVQ 399
            LR     F V        G  S   YL  + +V 
Sbjct: 136 FLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVH 170

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 64/155 (41%), Gaps = 20/155 (12%)
Query: 259 FFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSL---- 314
           F D    EDP   + +  +      ++   N S   ++G G FG+V  GRL   S     
Sbjct: 22  FVDPHTFEDPTQTVHEFAK------ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEIS 75
Query: 315 VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVAS 374
           VA+K LK   T+     F  E  ++    H N++RL G        ++V  +M NGS+ S
Sbjct: 76  VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDS 135
Query: 375 CLR---GMFIV-------SGFPSFFSYLFFIAFVQ 399
            LR     F V        G  S   YL  + +V 
Sbjct: 136 FLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVH 170

>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase Length = 342

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLT----DGS--LVAVKRLKEERTQGGELQFQTEVE 337
           +V   N +    LG G FG+VY+G+++    D S   VAVK L E  ++  EL F  E  
Sbjct: 41  EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 100
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +IS   H+N++R  G  +    R ++   M  G + S LR
Sbjct: 101 IISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLR 140

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 64/155 (41%), Gaps = 20/155 (12%)
Query: 259 FFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSL---- 314
           + D    EDP   + +  +      ++   N S   ++G G FG+V  GRL   S     
Sbjct: 20  YVDPHTYEDPTQTVHEFAK------ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEIS 73
Query: 315 VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVAS 374
           VA+K LK   T+     F  E  ++    H N++RL G        ++V  +M NGS+ S
Sbjct: 74  VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDS 133
Query: 375 CLR---GMFIV-------SGFPSFFSYLFFIAFVQ 399
            LR     F V        G  S   YL  + +V 
Sbjct: 134 FLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVH 168

>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In Complex With Crizotinib Length = 327

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLT----DGS--LVAVKRLKEERTQGGELQFQTEVE 337
           +V   N +    LG G FG+VY+G+++    D S   VAVK L E  ++  EL F  E  
Sbjct: 26  EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 85
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +IS   H+N++R  G  +    R ++   M  G + S LR
Sbjct: 86  IISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLR 125

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 296 LGRGGFGKVYKGR------LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
           +G G FG+V++ R          ++VAVK LKEE +   +  FQ E  +++   + N+++
Sbjct: 55  IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVK 114
Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
           L G C       L++ +M  G +   LR M
Sbjct: 115 LLGVCAVGKPMCLLFEYMAYGDLNEFLRSM 144

>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In Complex With Crizotinib (Pf-02341066) Length = 327

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLT----DGS--LVAVKRLKEERTQGGELQFQTEVE 337
           +V   N +    LG G FG+VY+G+++    D S   VAVK L E  ++  EL F  E  
Sbjct: 26  EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 85
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +IS   H+N++R  G  +    R ++   M  G + S LR
Sbjct: 86  IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLR 125

>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma Kinase Catalytic Domain Length = 327

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLT----DGS--LVAVKRLKEERTQGGELQFQTEVE 337
           +V   N +    LG G FG+VY+G+++    D S   VAVK L E  ++  EL F  E  
Sbjct: 27  EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 86
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +IS   H+N++R  G  +    R ++   M  G + S LR
Sbjct: 87  IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLR 126

>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With A Piperidine-Carboxamide Inhibitor Length = 333

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLT----DGS--LVAVKRLKEERTQGGELQFQTEVE 337
           +V   N +    LG G FG+VY+G+++    D S   VAVK L E  ++  EL F  E  
Sbjct: 33  EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 92
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +IS   H+N++R  G  +    R ++   M  G + S LR
Sbjct: 93  IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLR 132

>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 367

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLT----DGS--LVAVKRLKEERTQGGELQFQTEVE 337
           +V   N +    LG G FG+VY+G+++    D S   VAVK L E  ++  EL F  E  
Sbjct: 67  EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 126
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +IS   H+N++R  G  +    R ++   M  G + S LR
Sbjct: 127 IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLR 166

>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex With Nvp- Tae684 Length = 315

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLT----DGS--LVAVKRLKEERTQGGELQFQTEVE 337
           +V   N +    LG G FG+VY+G+++    D S   VAVK L E  ++  EL F  E  
Sbjct: 18  EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 77
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +IS   H+N++R  G  +    R ++   M  G + S LR
Sbjct: 78  IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLR 117

>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Piperidine-Carboxamide Inhibitor 2 Length = 327

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLT----DGS--LVAVKRLKEERTQGGELQFQTEVE 337
           +V   N +    LG G FG+VY+G+++    D S   VAVK L E  ++  EL F  E  
Sbjct: 27  EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 86
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +IS   H+N++R  G  +    R ++   M  G + S LR
Sbjct: 87  IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLR 126

>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Ch5424802 Length = 344

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLT----DGS--LVAVKRLKEERTQGGELQFQTEVE 337
           +V   N +    LG G FG+VY+G+++    D S   VAVK L E  ++  EL F  E  
Sbjct: 43  EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 102
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +IS   H+N++R  G  +    R ++   M  G + S LR
Sbjct: 103 IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLR 142

>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In Complex With Acyliminobenzimidazole Inhibitor 1 Length = 353

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLT----DGS--LVAVKRLKEERTQGGELQFQTEVE 337
           +V   N +    LG G FG+VY+G+++    D S   VAVK L E  ++  EL F  E  
Sbjct: 53  EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 112
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +IS   H+N++R  G  +    R ++   M  G + S LR
Sbjct: 113 IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLR 152

>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase Catalytic Domain Length = 344

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLT----DGS--LVAVKRLKEERTQGGELQFQTEVE 337
           +V   N +    LG G FG+VY+G+++    D S   VAVK L E  ++  EL F  E  
Sbjct: 44  EVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEAL 103
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +IS   H+N++R  G  +    R ++   M  G + S LR
Sbjct: 104 IISKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLR 143

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 64/155 (41%), Gaps = 20/155 (12%)
Query: 259 FFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSL---- 314
           + D    EDP   + +  +      ++   N S   ++G G FG+V  GRL   S     
Sbjct: 22  YVDPHTFEDPTQTVHEFAK------ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEIS 75
Query: 315 VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVAS 374
           VA+K LK   T+     F  E  ++    H N++RL G        ++V  +M NGS+ S
Sbjct: 76  VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDS 135
Query: 375 CLR---GMFIV-------SGFPSFFSYLFFIAFVQ 399
            LR     F V        G  S   YL  + +V 
Sbjct: 136 FLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVH 170

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 278 FSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEV 336
            SL + ++   + + ++ LG G FG+VY+G     SL VAVK LKE+  +  E  F  E 
Sbjct: 1   MSLDKWEMERTDITMKHKLGGGQFGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEA 58
Query: 337 EMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
            ++    H NL++L G C       ++  FM  G++   LR
Sbjct: 59  AVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLR 99

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL----VAVKRLKEERTQGGELQFQTEVEMISMAVH 344
           N S   ++G G FG+V  GRL   S     VA+K LK   T+     F  E  ++    H
Sbjct: 17  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDH 76
Query: 345 RNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR---GMFIV-------SGFPSFFSYLFF 394
            N++RL G        ++V  +M NGS+ S LR     F V        G  S   YL  
Sbjct: 77  PNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSD 136
Query: 395 IAFVQ 399
           + +V 
Sbjct: 137 MGYVH 141

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 296 LGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 354
           +GRG FG+V+ GRL  D +LVAVK  +E      + +F  E  ++    H N++RL G C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181
Query: 355 MTPTERLLVYPFMVNGSVASCLR 377
                  +V   +  G   + LR
Sbjct: 182 TQKQPIYIVMELVQGGDFLTFLR 204

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL----VAVKRLKEERTQGGELQFQTEVEMISMAVH 344
           N S   ++G G FG+V  GRL   S     VA+K LK   T+     F  E  ++    H
Sbjct: 34  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDH 93
Query: 345 RNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR---GMFIV-------SGFPSFFSYLFF 394
            N++RL G        ++V  +M NGS+ S LR     F V        G  S   YL  
Sbjct: 94  PNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSD 153
Query: 395 IAFVQ 399
           + +V 
Sbjct: 154 MGYVH 158

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 296 LGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 354
           +GRG FG+V+ GRL  D +LVAVK  +E      + +F  E  ++    H N++RL G C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181
Query: 355 MTPTERLLVYPFMVNGSVASCLR 377
                  +V   +  G   + LR
Sbjct: 182 TQKQPIYIVMELVQGGDFLTFLR 204

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 279 SLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVE 337
           SL + ++   + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  
Sbjct: 2   SLDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAA 59
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++    H NL++L G C       ++  FM  G++   LR
Sbjct: 60  VMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLR 99

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 293 RNILGRGGFGKVYKGRLTDGSL---VAVKRLKEERTQGGELQFQTEVEMI-SMAVHRNLL 348
           ++++G G FG+V K R+    L    A+KR+KE  ++     F  E+E++  +  H N++
Sbjct: 20  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 79
Query: 349 RLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFA 408
            L G C       L   +  +G++   LR   ++   P+ F+     A   S  Q LHFA
Sbjct: 80  NLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPA-FAIANSTASTLSSQQLLHFA 138

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 293 RNILGRGGFGKVYKGRLTDGSL---VAVKRLKEERTQGGELQFQTEVEMI-SMAVHRNLL 348
           ++++G G FG+V K R+    L    A+KR+KE  ++     F  E+E++  +  H N++
Sbjct: 27  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 86
Query: 349 RLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFA 408
            L G C       L   +  +G++   LR   ++   P+ F+     A   S  Q LHFA
Sbjct: 87  NLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPA-FAIANSTASTLSSQQLLHFA 145

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 14/142 (9%)
Query: 249 YWRKRKPEDHFFDVP-AEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKG 307
           Y++ + PE  F+  P   E+P    G+  R   RE++ +  +     I+G G  G+V  G
Sbjct: 15  YFQGKLPEPQFYAEPHTYEEP----GRAGRSFTREIEASRIHIEK--IIGSGDSGEVCYG 68
Query: 308 RL----TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV 363
           RL         VA+K LK   T+     F +E  ++    H N++RL G        ++V
Sbjct: 69  RLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIV 128
Query: 364 YPFMVNGSVASCLR---GMFIV 382
             +M NGS+ + LR   G F +
Sbjct: 129 TEYMENGSLDTFLRTHDGQFTI 150

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 293 RNILGRGGFGKVYKGRLTDGSL---VAVKRLKEERTQGGELQFQTEVEMI-SMAVHRNLL 348
           ++++G G FG+V K R+    L    A+KR+KE  ++     F  E+E++  +  H N++
Sbjct: 30  QDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNII 89
Query: 349 RLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFA 408
            L G C       L   +  +G++   LR   ++   P+ F+     A   S  Q LHFA
Sbjct: 90  NLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPA-FAIANSTASTLSSQQLLHFA 148

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 14/142 (9%)
Query: 249 YWRKRKPEDHFFDVP-AEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKG 307
           Y++ + PE  F+  P   E+P    G+  R   RE++ +  +     I+G G  G+V  G
Sbjct: 15  YFQGKLPEPQFYAEPHTYEEP----GRAGRSFTREIEASRIHIEK--IIGSGDSGEVCYG 68
Query: 308 RL----TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV 363
           RL         VA+K LK   T+     F +E  ++    H N++RL G        ++V
Sbjct: 69  RLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIV 128
Query: 364 YPFMVNGSVASCLR---GMFIV 382
             +M NGS+ + LR   G F +
Sbjct: 129 TEYMENGSLDTFLRTHDGQFTI 150

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 285 VATDNFSNRNI-----LGRGGFGKVYKGRL------TDGSLVAVKRLKEERTQGGELQFQ 333
           +   +   R+I     LG G FGKV+           D  LVAVK LK+  T      FQ
Sbjct: 7   IHVQHIKRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDP-TLAARKDFQ 65
Query: 334 TEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR-----GMFIVSGFP 386
            E E+++   H ++++  G C      ++V+ +M +G +   LR      M +V G P
Sbjct: 66  REAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQP 123

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 63/155 (40%), Gaps = 20/155 (12%)
Query: 259 FFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSL---- 314
           + D    EDP   + +  +      ++   N S   ++G G FG+V  GRL   S     
Sbjct: 22  YVDPHTYEDPTQTVHEFAK------ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEIS 75
Query: 315 VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVAS 374
           VA+K LK   T+     F  E  ++    H N++RL G        ++V   M NGS+ S
Sbjct: 76  VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDS 135
Query: 375 CLR---GMFIV-------SGFPSFFSYLFFIAFVQ 399
            LR     F V        G  S   YL  + +V 
Sbjct: 136 FLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVH 170

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 10/123 (8%)
Query: 259 FFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSL---- 314
           F D    EDP   + +  +      ++   N S   ++G G FG+V  GRL   S     
Sbjct: 22  FVDPHTFEDPTQTVHEFAK------ELDATNISIDKVVGAGEFGEVCSGRLKLPSKKEIS 75
Query: 315 VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVAS 374
           VA+K LK   T+     F  E  ++    H N++RL G        ++V   M NGS+ S
Sbjct: 76  VAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEXMENGSLDS 135
Query: 375 CLR 377
            LR
Sbjct: 136 FLR 138

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 278 FSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEV 336
            SL + ++   + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E 
Sbjct: 1   MSLDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEA 58
Query: 337 EMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
            ++    H NL++L G C       ++  FM  G++   LR
Sbjct: 59  AVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLR 99

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 293 RNILGRGGFGKVYKGRLT----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLL 348
             ++G G FG+V  G L         VA+K LK   T+     F +E  ++    H N++
Sbjct: 38  EQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVI 97
Query: 349 RLRGFCMTPTERLLVYPFMVNGSVASCLR---GMFIV 382
            L G     T  +++  FM NGS+ S LR   G F V
Sbjct: 98  HLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTV 134

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 53/125 (42%), Gaps = 14/125 (11%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL----VAVKRLKEERTQGGELQFQTEVEMISMAVH 344
           N S   ++G G FG+V  GRL   S     VA+K LK   T+     F  E  ++    H
Sbjct: 17  NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDH 76
Query: 345 RNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR---GMFIV-------SGFPSFFSYLFF 394
            N++RL G        ++V   M NGS+ S LR     F V        G  S   YL  
Sbjct: 77  PNIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSD 136
Query: 395 IAFVQ 399
           + +V 
Sbjct: 137 MGYVH 141

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 293 RNILGRGGFGKVYKGRLT----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLL 348
             ++G G FG+V  G L         VA+K LK   T+     F +E  ++    H N++
Sbjct: 12  EQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVI 71
Query: 349 RLRGFCMTPTERLLVYPFMVNGSVASCLR---GMFIV 382
            L G     T  +++  FM NGS+ S LR   G F V
Sbjct: 72  HLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTV 108

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 283 LQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLK----EERTQGGELQFQTEVEM 338
           L++     +   I+G GGFGKVY+     G  VAVK  +    E+ +Q  E   + E ++
Sbjct: 2   LEIDFAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIE-NVRQEAKL 59
Query: 339 ISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFI 381
            +M  H N++ LRG C+      LV  F   G +   L G  I
Sbjct: 60  FAMLKHPNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRI 102

>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex Length = 349

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTD-GSLVAVKR-LKEERTQGGELQFQTEVEMISMAVHRN 346
           ++++  ++G G FG VY+ +L D G LVA+K+ L+++R +  ELQ   +++      H N
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLD------HCN 74
Query: 347 LLRLRGFCMTPTER 360
           ++RLR F  +  E+
Sbjct: 75  IVRLRYFFYSSGEK 88

>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase 3beta In Complex With An Inhibitor Length = 350

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTD-GSLVAVKR-LKEERTQGGELQFQTEVEMISMAVHRN 346
           ++++  ++G G FG VY+ +L D G LVA+K+ L+++R +  ELQ   +++      H N
Sbjct: 22  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLD------HCN 75
Query: 347 LLRLRGFCMTPTER 360
           ++RLR F  +  E+
Sbjct: 76  IVRLRYFFYSSGEK 89

>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor That Attenuates Hyperactivity In Clock Mutant Mice Length = 350

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTD-GSLVAVKR-LKEERTQGGELQFQTEVEMISMAVHRN 346
           ++++  ++G G FG VY+ +L D G LVA+K+ L+++R +  ELQ   +++      H N
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLD------HCN 74
Query: 347 LLRLRGFCMTPTER 360
           ++RLR F  +  E+
Sbjct: 75  IVRLRYFFYSSGEK 88

>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide And Inhibitor 7d Length = 350

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTD-GSLVAVKR-LKEERTQGGELQFQTEVEMISMAVHRN 346
           ++++  ++G G FG VY+ +L D G LVA+K+ L+++R +  ELQ   +++      H N
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLD------HCN 74
Query: 347 LLRLRGFCMTPTER 360
           ++RLR F  +  E+
Sbjct: 75  IVRLRYFFYSSGEK 88

>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With 3-Indolyl-4- Arylmaleimide Inhibitor Length = 391

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTD-GSLVAVKR-LKEERTQGGELQFQTEVEMISMAVHRN 346
           ++++  ++G G FG VY+ +L D G LVA+K+ L+++R +  ELQ   +++      H N
Sbjct: 26  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLD------HCN 79
Query: 347 LLRLRGFCMTPTER 360
           ++RLR F  +  E+
Sbjct: 80  IVRLRYFFYSSGEK 93

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++    H NL
Sbjct: 19  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEIKHPNL 76
Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++L G C       ++  FM  G++   LR
Sbjct: 77  VQLLGVCTREPPFYIIIEFMTYGNLLDYLR 106

>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Benzoimidazol Inhibitor Length = 372

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTD-GSLVAVKR-LKEERTQGGELQFQTEVEMISMAVHRN 346
           ++++  ++G G FG VY+ +L D G LVA+K+ L+++R +  ELQ   +++      H N
Sbjct: 34  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLD------HCN 87
Query: 347 LLRLRGFCMTPTER 360
           ++RLR F  +  E+
Sbjct: 88  IVRLRYFFYSSGEK 101

>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis- (Indole)maleimide Pyridinophane Inhibitor Length = 352

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTD-GSLVAVKR-LKEERTQGGELQFQTEVEMISMAVHRN 346
           ++++  ++G G FG VY+ +L D G LVA+K+ L+++R +  ELQ   +++      H N
Sbjct: 21  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLD------HCN 74
Query: 347 LLRLRGFCMTPTER 360
           ++RLR F  +  E+
Sbjct: 75  IVRLRYFFYSSGEK 88

>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With Frattide Peptide Length = 378

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTD-GSLVAVKR-LKEERTQGGELQFQTEVEMISMAVHRN 346
           ++++  ++G G FG VY+ +L D G LVA+K+ L+++R +  ELQ   +++      H N
Sbjct: 40  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLD------HCN 93
Query: 347 LLRLRGFCMTPTER 360
           ++RLR F  +  E+
Sbjct: 94  IVRLRYFFYSSGEK 107

>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective Gsk-3 Inhibitors Length = 367

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTD-GSLVAVKR-LKEERTQGGELQFQTEVEMISMAVHRN 346
           ++++  ++G G FG VY+ +L D G LVA+K+ L+++R +  ELQ   +++      H N
Sbjct: 29  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLD------HCN 82
Query: 347 LLRLRGFCMTPTER 360
           ++RLR F  +  E+
Sbjct: 83  IVRLRYFFYSSGEK 96

>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-3beta Inhibitors Length = 371

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTD-GSLVAVKR-LKEERTQGGELQFQTEVEMISMAVHRN 346
           ++++  ++G G FG VY+ +L D G LVA+K+ L+++R +  ELQ   +++      H N
Sbjct: 33  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLD------HCN 86
Query: 347 LLRLRGFCMTPTER 360
           ++RLR F  +  E+
Sbjct: 87  IVRLRYFFYSSGEK 100

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++    H NL
Sbjct: 19  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEIKHPNL 76
Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++L G C       ++  FM  G++   LR
Sbjct: 77  VQLLGVCTREPPFYIITEFMTYGNLLDYLR 106

>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex Length = 353

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTD-GSLVAVKR-LKEERTQGGELQFQTEVEMISMAVHRN 346
           ++++  ++G G FG VY+ +L D G LVA+K+ L+++R +  ELQ   +++      H N
Sbjct: 25  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLD------HCN 78
Query: 347 LLRLRGFCMTPTER 360
           ++RLR F  +  E+
Sbjct: 79  IVRLRYFFYSSGEK 92

>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In Complexed With Inhibitor Length = 414

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTD-GSLVAVKR-LKEERTQGGELQFQTEVEMISMAVHRN 346
           ++++  ++G G FG VY+ +L D G LVA+K+ L+++R +  ELQ   +++      H N
Sbjct: 49  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLD------HCN 102
Query: 347 LLRLRGFCMTPTER 360
           ++RLR F  +  E+
Sbjct: 103 IVRLRYFFYSSGEK 116

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++    H NL
Sbjct: 15  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEIKHPNL 72
Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++L G C       ++  FM  G++   LR
Sbjct: 73  VQLLGVCTREPPFYIIIEFMTYGNLLDYLR 102

>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Imidazopyridine Inhibitor Length = 382

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTD-GSLVAVKR-LKEERTQGGELQFQTEVEMISMAVHRN 346
           ++++  ++G G FG VY+ +L D G LVA+K+ L+++R +  ELQ   +++      H N
Sbjct: 33  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLD------HCN 86
Query: 347 LLRLRGFCMTPTER 360
           ++RLR F  +  E+
Sbjct: 87  IVRLRYFFYSSGEK 100

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++    H NL
Sbjct: 14  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEIKHPNL 71
Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++L G C       ++  FM  G++   LR
Sbjct: 72  VQLLGVCTREPPFYIIIEFMTYGNLLDYLR 101

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++    H NL
Sbjct: 14  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEIKHPNL 71
Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++L G C       ++  FM  G++   LR
Sbjct: 72  VQLLGVCTREPPFYIITEFMTYGNLLDYLR 101

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++    H NL
Sbjct: 18  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEIKHPNL 75
Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++L G C       ++  FM  G++   LR
Sbjct: 76  VQLLGVCTREPPFYIITEFMTYGNLLDYLR 105

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++    H NL
Sbjct: 19  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEIKHPNL 76
Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++L G C       ++  FM  G++   LR
Sbjct: 77  VQLLGVCTREPPFYIITEFMTYGNLLDYLR 106

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++    H NL
Sbjct: 14  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEIKHPNL 71
Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++L G C       ++  FM  G++   LR
Sbjct: 72  VQLLGVCTREPPFYIITEFMTYGNLLDYLR 101

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++    H NL
Sbjct: 16  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEIKHPNL 73
Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++L G C       ++  FM  G++   LR
Sbjct: 74  VQLLGVCTREPPFYIITEFMTYGNLLDYLR 103

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++    H NL
Sbjct: 16  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEIKHPNL 73
Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++L G C       ++  FM  G++   LR
Sbjct: 74  VQLLGVCTREPPFYIITEFMTYGNLLDYLR 103

>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Length = 420

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTD-GSLVAVKR-LKEERTQGGELQFQTEVEMISMAVHRN 346
           ++++  ++G G FG VY+ +L D G LVA+K+ L+++R +  ELQ   +++      H N
Sbjct: 55  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLD------HCN 108
Query: 347 LLRLRGFCMTPTER 360
           ++RLR F  +  E+
Sbjct: 109 IVRLRYFFYSSGEK 122

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++    H NL
Sbjct: 27  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEIKHPNL 84
Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++L G C       ++  FM  G++   LR
Sbjct: 85  VQLLGVCTREPPFYIITEFMTYGNLLDYLR 114

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++    H NL
Sbjct: 15  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEIKHPNL 72
Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++L G C       ++  FM  G++   LR
Sbjct: 73  VQLLGVCTREPPFYIITEFMTYGNLLDYLR 102

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++    H NL
Sbjct: 16  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEIKHPNL 73
Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++L G C       ++  FM  G++   LR
Sbjct: 74  VQLLGVCTREPPFYIITEFMTYGNLLDYLR 103

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++    H NL
Sbjct: 14  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEIKHPNL 71
Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++L G C       ++  FM  G++   LR
Sbjct: 72  VQLLGVCTREPPFYIITEFMTYGNLLDYLR 101

>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta (Gsk3b) In Complex With Inhibitor 142 Length = 430

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 8/67 (11%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTD-GSLVAVKR-LKEERTQGGELQFQTEVEMISMAVHRN 346
           ++++  ++G G FG VY+ +L D G LVA+K+ L+++R +  ELQ   +++      H N
Sbjct: 55  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLD------HCN 108
Query: 347 LLRLRGF 353
           ++RLR F
Sbjct: 109 IVRLRYF 115

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 265 EEDPEVHLG-QLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKE 322
           E +PE  L  + K    ++ Q A ++F     LG+G FG VY  R      + A+K L +
Sbjct: 10  ENNPEEELASKQKNEESKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFK 69
Query: 323 ERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
            + +  G E Q + EVE+ S   H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 70  AQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 128

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++    H NL
Sbjct: 19  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEIKHPNL 76
Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++L G C       ++  FM  G++   LR
Sbjct: 77  VQLLGVCTREPPFYIITEFMTYGNLLDYLR 106

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 265 EEDPEVHLG-QLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKE 322
           E +PE  L  + K    ++ Q A ++F     LG+G FG VY  R      + A+K L +
Sbjct: 10  ENNPEEELASKQKNEESKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFK 69
Query: 323 ERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
            + +  G E Q + EVE+ S   H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 70  AQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 128

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 265 EEDPEVHLG-QLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKE 322
           E +PE  L  + K    ++ Q A ++F     LG+G FG VY  R      + A+K L +
Sbjct: 1   ENNPEEELASKQKNEESKKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFK 60
Query: 323 ERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
            + +  G E Q + EVE+ S   H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 61  AQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 119

>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp Length = 422

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTD-GSLVAVKR-LKEERTQGGELQFQTEVEMISMAVHRN 346
           ++++  ++G G FG VY+ +L D G LVA+K+ L+++R +  ELQ   +++      H N
Sbjct: 57  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLD------HCN 110
Query: 347 LLRLRGFCMTPTER 360
           ++RLR F  +  E+
Sbjct: 111 IVRLRYFFYSSGEK 124

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++    H NL
Sbjct: 14  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEIKHPNL 71
Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++L G C       ++  FM  G++   LR
Sbjct: 72  VQLLGVCTREPPFYIIIEFMTYGNLLDYLR 101

>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine Length = 424

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTD-GSLVAVKR-LKEERTQGGELQFQTEVEMISMAVHRN 346
           ++++  ++G G FG VY+ +L D G LVA+K+ L+++R +  ELQ   +++      H N
Sbjct: 59  SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLD------HCN 112
Query: 347 LLRLRGFCMTPTER 360
           ++RLR F  +  E+
Sbjct: 113 IVRLRYFFYSSGEK 126

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 294 NILGRGGFGKVYKGRL--TDGSLV--AVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++GRG FG VY G L   DG  +  AVK L      G   QF TE  ++    H N+L 
Sbjct: 41  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 100
Query: 350 LRGFCM-TPTERLLVYPFMVNGSVASCLR 377
           L G C+ +    L+V P+M +G + + +R
Sbjct: 101 LLGICLRSEGSPLVVLPYMKHGDLRNFIR 129

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 294 NILGRGGFGKVYKGRL--TDGSLV--AVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++GRG FG VY G L   DG  +  AVK L      G   QF TE  ++    H N+L 
Sbjct: 34  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 93
Query: 350 LRGFCM-TPTERLLVYPFMVNGSVASCLR 377
           L G C+ +    L+V P+M +G + + +R
Sbjct: 94  LLGICLRSEGSPLVVLPYMKHGDLRNFIR 122

>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor Length = 465

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTD-GSLVAVKR-LKEERTQGGELQFQTEVEMISMAVHRN 346
           ++++  ++G G FG VY+ +L D G LVA+K+ L+++R +  ELQ   +++      H N
Sbjct: 100 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLD------HCN 153
Query: 347 LLRLRGFCMTPTER 360
           ++RLR F  +  E+
Sbjct: 154 IVRLRYFFYSSGEK 167

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++    H NL
Sbjct: 19  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEIKHPNL 76
Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++L G C       ++  FM  G++   LR
Sbjct: 77  VQLLGVCTREPPFYIITEFMTYGNLLDYLR 106

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 289 NFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++    H NL
Sbjct: 14  DITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEIKHPNL 71
Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++L G C       ++  FM  G++   LR
Sbjct: 72  VQLLGVCTREPPFYIITEFMTYGNLLDYLR 101

>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure Length = 285

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 281 RELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVE 337
           ++ Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE
Sbjct: 6   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 65
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
           + S   H N+LRL G+    T   L+  +   G V   L+ +
Sbjct: 66  IQSHLRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKL 107

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMA 342
           ++   + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++   
Sbjct: 216 EMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEI 273
Query: 343 VHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
            H NL++L G C       ++  FM  G++   LR
Sbjct: 274 KHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLR 308

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 294 NILGRGGFGKVYKGRL--TDGSLV--AVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++GRG FG VY G L   DG  +  AVK L      G   QF TE  ++    H N+L 
Sbjct: 37  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 96
Query: 350 LRGFCM-TPTERLLVYPFMVNGSVASCLR 377
           L G C+ +    L+V P+M +G + + +R
Sbjct: 97  LLGICLRSEGSPLVVLPYMKHGDLRNFIR 125

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 294 NILGRGGFGKVYKGRL--TDGSLV--AVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++GRG FG VY G L   DG  +  AVK L      G   QF TE  ++    H N+L 
Sbjct: 36  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 95
Query: 350 LRGFCM-TPTERLLVYPFMVNGSVASCLR 377
           L G C+ +    L+V P+M +G + + +R
Sbjct: 96  LLGICLRSEGSPLVVLPYMKHGDLRNFIR 124

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 294 NILGRGGFGKVYKG-RLTDGSLV----AVKRLKEERTQGGELQFQTEVEMISMAVHRNLL 348
            +LG G FG VYKG  + +G  V    A+K L E       ++F  E  +++   H +L+
Sbjct: 21  KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLV 80
Query: 349 RLRGFCMTPTERLL 362
           RL G C++PT +L+
Sbjct: 81  RLLGVCLSPTIQLV 94

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 285 VATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRL----KEERTQGGE--LQFQTEVE 337
           +A +       +G+GGFG V+KGRL  D S+VA+K L     E  T+  E   +FQ EV 
Sbjct: 16  LADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVF 75
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVY 364
           ++S   H N+++L G    P   ++ +
Sbjct: 76  IMSNLNHPNIVKLYGLMHNPPRMVMEF 102

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 294 NILGRGGFGKVYKGRL--TDGSLV--AVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++GRG FG VY G L   DG  +  AVK L      G   QF TE  ++    H N+L 
Sbjct: 36  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 95
Query: 350 LRGFCM-TPTERLLVYPFMVNGSVASCLR 377
           L G C+ +    L+V P+M +G + + +R
Sbjct: 96  LLGICLRSEGSPLVVLPYMKHGDLRNFIR 124

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 294 NILGRGGFGKVYKGRL--TDGSLV--AVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++GRG FG VY G L   DG  +  AVK L      G   QF TE  ++    H N+L 
Sbjct: 95  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 154
Query: 350 LRGFCM-TPTERLLVYPFMVNGSVASCLR 377
           L G C+ +    L+V P+M +G + + +R
Sbjct: 155 LLGICLRSEGSPLVVLPYMKHGDLRNFIR 183

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 294 NILGRGGFGKVYKGRL--TDGSLV--AVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++GRG FG VY G L   DG  +  AVK L      G   QF TE  ++    H N+L 
Sbjct: 55  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 114
Query: 350 LRGFCM-TPTERLLVYPFMVNGSVASCLR 377
           L G C+ +    L+V P+M +G + + +R
Sbjct: 115 LLGICLRSEGSPLVVLPYMKHGDLRNFIR 143

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 294 NILGRGGFGKVYKGRL--TDGSLV--AVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++GRG FG VY G L   DG  +  AVK L      G   QF TE  ++    H N+L 
Sbjct: 37  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 96
Query: 350 LRGFCM-TPTERLLVYPFMVNGSVASCLR 377
           L G C+ +    L+V P+M +G + + +R
Sbjct: 97  LLGICLRSEGSPLVVLPYMKHGDLRNFIR 125

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 294 NILGRGGFGKVYKGRL--TDGSLV--AVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++GRG FG VY G L   DG  +  AVK L      G   QF TE  ++    H N+L 
Sbjct: 54  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 113
Query: 350 LRGFCM-TPTERLLVYPFMVNGSVASCLR 377
           L G C+ +    L+V P+M +G + + +R
Sbjct: 114 LLGICLRSEGSPLVVLPYMKHGDLRNFIR 142

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 294 NILGRGGFGKVYKGRL--TDGSLV--AVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++GRG FG VY G L   DG  +  AVK L      G   QF TE  ++    H N+L 
Sbjct: 36  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 95
Query: 350 LRGFCM-TPTERLLVYPFMVNGSVASCLR 377
           L G C+ +    L+V P+M +G + + +R
Sbjct: 96  LLGICLRSEGSPLVVLPYMKHGDLRNFIR 124

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 281 RELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVE 337
           ++ Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE
Sbjct: 6   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 65
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
           + S   H N+LRL G+    T   L+  +   G V   L+ +
Sbjct: 66  IQSHLRHPNILRLYGYFHDATRVYLILEYAPRGEVYKELQKL 107

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 294 NILGRGGFGKVYKGRL--TDGSLV--AVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++GRG FG VY G L   DG  +  AVK L      G   QF TE  ++    H N+L 
Sbjct: 35  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 94
Query: 350 LRGFCM-TPTERLLVYPFMVNGSVASCLR 377
           L G C+ +    L+V P+M +G + + +R
Sbjct: 95  LLGICLRSEGSPLVVLPYMKHGDLRNFIR 123

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 285 VATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRL----KEERTQGGE--LQFQTEVE 337
           +A +       +G+GGFG V+KGRL  D S+VA+K L     E  T+  E   +FQ EV 
Sbjct: 16  LADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVF 75
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVY 364
           ++S   H N+++L G    P   ++ +
Sbjct: 76  IMSNLNHPNIVKLYGLMHNPPRMVMEF 102

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 294 NILGRGGFGKVYKGRL--TDGSLV--AVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++GRG FG VY G L   DG  +  AVK L      G   QF TE  ++    H N+L 
Sbjct: 36  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 95
Query: 350 LRGFCM-TPTERLLVYPFMVNGSVASCLR 377
           L G C+ +    L+V P+M +G + + +R
Sbjct: 96  LLGICLRSEGSPLVVLPYMKHGDLRNFIR 124

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 285 VATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRL----KEERTQGGE--LQFQTEVE 337
           +A +       +G+GGFG V+KGRL  D S+VA+K L     E  T+  E   +FQ EV 
Sbjct: 16  LADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVF 75
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVY 364
           ++S   H N+++L G    P   ++ +
Sbjct: 76  IMSNLNHPNIVKLYGLMHNPPRMVMEF 102

>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer Length = 319

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 280 LRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQ-FQTEVEM 338
           L+E  +  +      ++G+G FG+VY GR      VA++ +  ER    +L+ F+ EV  
Sbjct: 25  LQEWDIPFEQLEIGELIGKGRFGQVYHGRWH--GEVAIRLIDIERDNEDQLKAFKREVMA 82
Query: 339 ISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIV 382
                H N++   G CM+P    ++       ++ S +R   IV
Sbjct: 83  YRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIV 126

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 294 NILGRGGFGKVYKGRL--TDGSLV--AVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++GRG FG VY G L   DG  +  AVK L      G   QF TE  ++    H N+L 
Sbjct: 33  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 92
Query: 350 LRGFCM-TPTERLLVYPFMVNGSVASCLR 377
           L G C+ +    L+V P+M +G + + +R
Sbjct: 93  LLGICLRSEGSPLVVLPYMKHGDLRNFIR 121

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 294 NILGRGGFGKVYKGRL--TDGSLV--AVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++GRG FG VY G L   DG  +  AVK L      G   QF TE  ++    H N+L 
Sbjct: 31  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 90
Query: 350 LRGFCM-TPTERLLVYPFMVNGSVASCLR 377
           L G C+ +    L+V P+M +G + + +R
Sbjct: 91  LLGICLRSEGSPLVVLPYMKHGDLRNFIR 119

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMA 342
           ++   + + ++ LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++   
Sbjct: 255 EMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEI 312
Query: 343 VHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
            H NL++L G C       ++  FM  G++   LR
Sbjct: 313 KHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLR 347

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 294 NILGRGGFGKVYKGRL--TDGSLV--AVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++GRG FG VY G L   DG  +  AVK L      G   QF TE  ++    H N+L 
Sbjct: 28  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 87
Query: 350 LRGFCM-TPTERLLVYPFMVNGSVASCLR 377
           L G C+ +    L+V P+M +G + + +R
Sbjct: 88  LLGICLRSEGSPLVVLPYMKHGDLRNFIR 116

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 294 NILGRGGFGKVYKGRL--TDGSLV--AVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++GRG FG VY G L   DG  +  AVK L      G   QF TE  ++    H N+L 
Sbjct: 34  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 93
Query: 350 LRGFCM-TPTERLLVYPFMVNGSVASCLR 377
           L G C+ +    L+V P+M +G + + +R
Sbjct: 94  LLGICLRSEGSPLVVLPYMKHGDLRNFIR 122

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 294 NILGRGGFGKVYKGRL--TDGSLV--AVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++GRG FG VY G L   DG  +  AVK L      G   QF TE  ++    H N+L 
Sbjct: 35  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 94
Query: 350 LRGFCM-TPTERLLVYPFMVNGSVASCLR 377
           L G C+ +    L+V P+M +G + + +R
Sbjct: 95  LLGICLRSEGSPLVVLPYMKHGDLRNFIR 123

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 279 SLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVE 337
           S+ + ++   + + ++ LG G +G+VY G     SL VAVK LKE+  +  E  F  E  
Sbjct: 23  SMDKWEMERTDITMKHKLGGGQYGEVYVGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAA 80
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++    H NL++L G C       +V  +M  G++   LR
Sbjct: 81  VMKEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNLLDYLR 120

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 294 NILGRGGFGKVYKG-RLTDGSLV----AVKRLKEERTQGGELQFQTEVEMISMAVHRNLL 348
            +LG G FG VYKG  + +G  V    A+K L E       ++F  E  +++   H +L+
Sbjct: 44  KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLV 103
Query: 349 RLRGFCMTPTERLL 362
           RL G C++PT +L+
Sbjct: 104 RLLGVCLSPTIQLV 117

>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A Pentacyclic Inhibitor Length = 268

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVEMIS 340
           Q A ++F     LG+G FG VY  R  +   + A+K L + + +  G E Q + EVE+ S
Sbjct: 4   QWALEDFEIGRPLGKGKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQS 63
Query: 341 MAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
              H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 64  HLRHPNILRLYGYFHDSTRVYLILEYAPLGTVYRELQKL 102

>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine Inhibitor Length = 272

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 281 RELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVE 337
           ++ Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE
Sbjct: 4   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 63
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
           + S   H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 64  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 105

>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679 Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 281 RELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVE 337
           ++ Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE
Sbjct: 2   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 61
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
           + S   H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 62  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 103

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 281 RELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVE 337
           ++ Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE
Sbjct: 2   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 61
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
           + S   H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 62  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 103

>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 281 RELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVE 337
           ++ Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE
Sbjct: 4   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 63
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
           + S   H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 64  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 105

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 281 RELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVE 337
           ++ Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE
Sbjct: 1   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 60
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
           + S   H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 61  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 102

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 296 LGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM 355
           +G G FG V+ G   +   VA+K +KE      E  F  E E++    H  L++L G C+
Sbjct: 35  IGSGQFGLVHLGYWLNKDKVAIKTIKEGSMS--EDDFIEEAEVMMKLSHPKLVQLYGVCL 92
Query: 356 TPTERLLVYPFMVNGSVASCLR 377
                 LV+ FM +G ++  LR
Sbjct: 93  EQAPICLVFEFMEHGCLSDYLR 114

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 281 RELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVE 337
           ++ Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE
Sbjct: 2   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 61
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
           + S   H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 62  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 103

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVEMIS 340
           Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE+ S
Sbjct: 7   QWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQS 66
Query: 341 MAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
              H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 67  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 105

>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 275

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 281 RELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVE 337
           ++ Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE
Sbjct: 4   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 63
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
           + S   H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 64  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 105

>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa Length = 267

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVEMIS 340
           Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE+ S
Sbjct: 3   QWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQS 62
Query: 341 MAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
              H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 63  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 101

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 281 RELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVE 337
           ++ Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE
Sbjct: 6   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 65
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
           + S   H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 66  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 107

>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287, Thr288 And Bound To Tpx2 1-43 Length = 282

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 281 RELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVE 337
           ++ Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE
Sbjct: 3   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 62
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
           + S   H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 63  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 104

>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine Length = 268

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVEMIS 340
           Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE+ S
Sbjct: 4   QWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQS 63
Query: 341 MAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
              H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 64  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 102

>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a Length = 282

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 281 RELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVE 337
           ++ Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE
Sbjct: 3   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 62
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
           + S   H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 63  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 104

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 273 GQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQF 332
           G L     +E++V         ++GRG FG V K +      VA+K+++ E  +     F
Sbjct: 1   GSLHMIDYKEIEV-------EEVVGRGAFGVVCKAKWRAKD-VAIKQIESESERKA---F 49
Query: 333 QTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRG 378
             E+  +S   H N+++L G C+ P    LV  +   GS+ + L G
Sbjct: 50  IVELRQLSRVNHPNIVKLYGACLNPV--CLVMEYAEGGSLYNVLHG 93

>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 281 RELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVE 337
           ++ Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE
Sbjct: 6   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 65
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
           + S   H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 66  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 107

>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And Compound 10 Length = 268

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVEMIS 340
           Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE+ S
Sbjct: 4   QWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQS 63
Query: 341 MAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
              H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 64  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 102

>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor Length = 285

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 281 RELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVE 337
           ++ Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE
Sbjct: 6   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 65
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
           + S   H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 66  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 107

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVEMIS 340
           Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE+ S
Sbjct: 4   QWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQS 63
Query: 341 MAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
              H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 64  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 102

>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And Tpx2 Length = 268

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVEMIS 340
           Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE+ S
Sbjct: 4   QWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQS 63
Query: 341 MAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
              H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 64  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 102

>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300 Length = 280

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVEMIS 340
           Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE+ S
Sbjct: 4   QWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQS 63
Query: 341 MAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
              H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 64  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 102

>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine Inhibitor Length = 283

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 281 RELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVE 337
           ++ Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE
Sbjct: 4   KKRQWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVE 63
Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
           + S   H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 64  IQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 105

>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358 Length = 280

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVEMIS 340
           Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE+ S
Sbjct: 4   QWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQS 63
Query: 341 MAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
              H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 64  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 102

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVEMIS 340
           Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE+ S
Sbjct: 8   QWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQS 67
Query: 341 MAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
              H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 68  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 106

>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors Length = 283

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVEMIS 340
           Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE+ S
Sbjct: 7   QWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQS 66
Query: 341 MAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
              H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 67  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 105

>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant Length = 262

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLTDGSLV-AVKRLKEERTQ--GGELQFQTEVEMIS 340
           Q A ++F     LG+G FG VY  R      + A+K L + + +  G E Q + EVE+ S
Sbjct: 1   QWALEDFEIGRPLGKGKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQS 60
Query: 341 MAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
              H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 61  HLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 99

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 296 LGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM 355
           +G G FG V+ G   +   VA+K ++E      E  F  E E++    H  L++L G C+
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIREGAM--SEEDFIEEAEVMMKLSHPKLVQLYGVCL 72
Query: 356 TPTERLLVYPFMVNGSVASCLR 377
                 LV+ FM +G ++  LR
Sbjct: 73  EQAPICLVFEFMEHGCLSDYLR 94

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 296 LGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM 355
           +G G FG V+ G   +   VA+K ++E      E  F  E E++    H  L++L G C+
Sbjct: 13  IGSGQFGLVHLGYWLNKDKVAIKTIREGAM--SEEDFIEEAEVMMKLSHPKLVQLYGVCL 70
Query: 356 TPTERLLVYPFMVNGSVASCLR 377
                 LV+ FM +G ++  LR
Sbjct: 71  EQAPICLVFEFMEHGCLSDYLR 92

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 296 LGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM 355
           +G G FG V+ G   +   VA+K ++E      E  F  E E++    H  L++L G C+
Sbjct: 15  IGSGQFGLVHLGYWLNKDKVAIKTIREGAM--SEEDFIEEAEVMMKLSHPKLVQLYGVCL 72
Query: 356 TPTERLLVYPFMVNGSVASCLR 377
                 LV+ FM +G ++  LR
Sbjct: 73  EQAPICLVFEFMEHGCLSDYLR 94

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 296 LGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM 355
           +G G FG V+ G   +   VA+K ++E      E  F  E E++    H  L++L G C+
Sbjct: 18  IGSGQFGLVHLGYWLNKDKVAIKTIREGAM--SEEDFIEEAEVMMKLSHPKLVQLYGVCL 75
Query: 356 TPTERLLVYPFMVNGSVASCLR 377
                 LV+ FM +G ++  LR
Sbjct: 76  EQAPICLVFEFMEHGCLSDYLR 97

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 14/120 (11%)
Query: 294 NILGRGGFGKVYKGRLTDGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++G G FG+V  GRL         VA+K LK   T      F +E  ++    H N++ 
Sbjct: 20  KVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIH 79
Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLR---GMFIV-------SGFPSFFSYLFFIAFVQ 399
           L G        +++  +M NGS+ + LR   G F V        G  S   YL  +++V 
Sbjct: 80  LEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSYVH 139

>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7) Length = 318

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 62/155 (40%), Gaps = 20/155 (12%)
Query: 259 FFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLT----DGSL 314
           + D    EDP   + Q  +    EL  +        ++G G FG+V  GRL         
Sbjct: 20  YIDPETYEDPNRAVHQFAK----ELDASC--IKIERVIGAGEFGEVCSGRLKLPGKRDVA 73
Query: 315 VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVAS 374
           VA+K LK   T+     F  E  ++    H N++ L G        ++V  FM NG++ +
Sbjct: 74  VAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHLEGVVTRGKPVMIVIEFMENGALDA 133
Query: 375 CLR---GMFIV-------SGFPSFFSYLFFIAFVQ 399
            LR   G F V        G  +   YL  + +V 
Sbjct: 134 FLRKHDGQFTVIQLVGMLRGIAAGMRYLADMGYVH 168

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 14/120 (11%)
Query: 294 NILGRGGFGKVYKGRLTDGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++G G FG+V  GRL         VA+K LK   T      F +E  ++    H N++ 
Sbjct: 14  KVIGVGEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIH 73
Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLR---GMFIV-------SGFPSFFSYLFFIAFVQ 399
           L G        +++  +M NGS+ + LR   G F V        G  S   YL  +++V 
Sbjct: 74  LEGVVTKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSYVH 133

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	419
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	1e-76
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-38
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-34
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-08
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	6e-48
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	6e-44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-31
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-26
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-11
3soc_A	322	Activin receptor type-2A; structural genomics cons	4e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-20
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-19
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-19
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-14
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	4e-19
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	4e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-15
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	1e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-09
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	4e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-12
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-10
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	8e-15
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	9e-15
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	1e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-13
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-06
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	3e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-12
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	3e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-12
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	5e-14
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	9e-14
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	1e-13
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	1e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-10
3pls_A	298	Macrophage-stimulating protein receptor; protein k	2e-13
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	2e-13
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	2e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-06
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	3e-13
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	3e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-09
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	5e-13
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	7e-13
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	7e-13
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	8e-13
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	8e-13
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	9e-13
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	1e-12
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	1e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-11
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-12
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	2e-12
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	3e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-07
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	3e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-05
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	3e-12
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	4e-12
4aoj_A	329	High affinity nerve growth factor receptor; transf	4e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-06
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	4e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-12
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	4e-12
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	5e-12
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	5e-12
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	5e-12
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	5e-12
3q4u_A	301	Activin receptor type-1; structural genomics conso	5e-12
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	7e-12
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	7e-12
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	1e-11
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	1e-11
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	1e-11
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	2e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-05
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	2e-11
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	2e-11
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	3e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	3e-11
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	3e-11
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	3e-11
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	3e-11
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	3e-11
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	4e-11
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	5e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-11
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-09
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	1e-10
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	1e-10
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-10
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-08
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	8e-10
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	1e-09
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	1e-09
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	2e-09
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	2e-09
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	4e-09
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	6e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-06
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-06
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	7e-09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	1e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-06
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-08
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	3e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	4e-08
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	4e-08
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	4e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-07
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	5e-08
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	5e-08
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	7e-08
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	9e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	1e-07
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	1e-07
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-07
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-05
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	3e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-07
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-07
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	4e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-06
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	7e-07
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	8e-07
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	9e-07
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	1e-06
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	1e-06
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	1e-06
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	1e-06
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	1e-06
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	2e-06
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-06
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	2e-06
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-05
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-04
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	2e-06
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	3e-06
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	3e-06
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	3e-06
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	3e-06
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	3e-06
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	5e-06
3niz_A	311	Rhodanese family protein; structural genomics, str	5e-06
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	6e-06
3bhy_A	283	Death-associated protein kinase 3; death associate	6e-06
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	8e-06
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	9e-06
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	9e-06
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	1e-05
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	1e-05
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	1e-05
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-05
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	1e-05
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	1e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	9e-04
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	1e-05
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	2e-05
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	2e-05
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-05
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	2e-05
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	2e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	3e-05
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	3e-05
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	3e-05
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	3e-05
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	3e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	3e-05
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	3e-05
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	4e-05
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	4e-05
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	5e-05
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	5e-05
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	5e-05
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	5e-05
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	5e-05
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	6e-05
3o0g_A	292	Cell division protein kinase 5; kinase activator c	6e-05
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	6e-05
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	9e-05
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	1e-04
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	1e-04
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	1e-04
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	1e-04
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	1e-04
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	1e-04
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	1e-04
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	1e-04
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	1e-04
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-04
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	2e-04
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	2e-04
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	2e-04
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	2e-04
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	2e-04
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	2e-04
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	2e-04
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	2e-04
3aln_A	327	Dual specificity mitogen-activated protein kinase;	2e-04
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	2e-04
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-04
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	3e-04
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	3e-04
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	4e-04
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	4e-04
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	6e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	6e-04
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	7e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  240 bits (614), Expect = 1e-76
 Identities = 113/120 (94%), Positives = 117/120 (97%)

Query: 259 FFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVK 318
           FFDVPAEEDPEVHLGQLKRFSLRELQVA+DNFSN+NILGRGGFGKVYKGRL DG+LVAVK
Sbjct: 1   FFDVPAEEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVK 60

Query: 319 RLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRG 378
           RLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP+M NGSVASCLR 
Sbjct: 61  RLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRE 120

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  168 bits (427), Expect = 5e-49
 Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 10/190 (5%)

Query: 26  SNAEGDALNALKTNLADPNNVLQSWDATL-VNPCTWFHVTCNSENSVTRV---DLGNANL 81
           +  +  AL  +K +L +P   L SW  T      TW  V C+++    RV   DL   NL
Sbjct: 4   NPQDKQALLQIKKDLGNPTT-LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 82  SGQLV--SQLGQLTNLQYLELYS-NNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLG 138
                  S L  L  L +L +   NN+ G +P  +  LT L  L +   N++G IP  L 
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122

Query: 139 KLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN-GSF-SLFTPISFA 196
           ++  L  L  + N+L G +P S++++ +L  +    N+++G IP + GSF  LFT ++ +
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182

Query: 197 NNQLNNPPPS 206
            N+L    P 
Sbjct: 183 RNRLTGKIPP 192

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  140 bits (355), Expect = 1e-38
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 2/133 (1%)

Query: 66  NSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLY 125
           +     T + +    L+G++      L NL +++L  N + G      G+  N   + L 
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229

Query: 126 LNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNG 185
            N+L   +   +G    L  L L NN + G +P+ LT +  L  L++S N L G+IP  G
Sbjct: 230 KNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288

Query: 186 SFSLFTPISFANN 198
           +   F   ++ANN
Sbjct: 289 NLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  129 bits (326), Expect = 2e-34
 Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 2/130 (1%)

Query: 72  TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLV-SLDLYLNNLN 130
             +D     LSG L   +  L NL  +    N ISG +P+  G+ + L  S+ +  N L 
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 131 GPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLF 190
           G IP T   L+ L F+ L+ N L G+      +  + Q + L+ N L  D+   G     
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNL 246

Query: 191 TPISFANNQL 200
             +   NN++
Sbjct: 247 NGLDLRNNRI 256

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.9 bits (128), Expect = 6e-08
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN 128
           ++  +DL N  + G L   L QL  L  L +  NN+ G++P+  GNL          N 
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  165 bits (419), Expect = 6e-48
 Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 10/123 (8%)

Query: 265 EEDPEVHLGQLKRFSLRELQVATDNFSNR------NILGRGGFGKVYKGRLTDGSLVAVK 318
            +  EV   +   FS  EL+  T+NF  R      N +G GGFG VYKG + + + VAVK
Sbjct: 2   NKSLEVSDTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVK 60

Query: 319 RLKEERTQG---GELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASC 375
           +L           + QF  E+++++   H NL+ L GF     +  LVY +M NGS+   
Sbjct: 61  KLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDR 120

Query: 376 LRG 378
           L  
Sbjct: 121 LSC 123

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  154 bits (392), Expect = 6e-44
 Identities = 46/116 (39%), Positives = 69/116 (59%), Gaps = 1/116 (0%)

Query: 263 PAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKE 322
            A     +   +  R  L +L+ AT+NF ++ ++G G FGKVYKG L DG+ VA+KR   
Sbjct: 14  DALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTP 73

Query: 323 ERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRG 378
           E +Q G  +F+TE+E +S   H +L+ L GFC    E +L+Y +M NG++   L G
Sbjct: 74  ESSQ-GIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYG 128

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  140 bits (356), Expect = 2e-36
 Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 1/142 (0%)

Query: 66  NSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLY 125
           N +N++  + L N   +G++   L   + L  L L  N +SG +P  LG+L+ L  L L+
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450

Query: 126 LNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN- 184
           LN L G IP  L  +  L  L L+ N L GEIP  L+N  +L  + LSNN+LTG+IP   
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510

Query: 185 GSFSLFTPISFANNQLNNPPPS 206
           G       +  +NN  +   P+
Sbjct: 511 GRLENLAILKLSNNSFSGNIPA 532

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  140 bits (354), Expect = 3e-36
 Identities = 47/158 (29%), Positives = 78/158 (49%), Gaps = 13/158 (8%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           +    ++ +    G          ++ +L++  N +SG +P+E+G++  L  L+L  N++
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSL 189
           +G IP  +G L  L  L L++N L G IP++++ +  L  +DLSNN L+G IP  G F  
Sbjct: 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFET 728

Query: 190 FTPISFANNQLNNPPPSPP----PPLQPTPPGASSGNS 223
           F P  F NN         P     PL    P  + G +
Sbjct: 729 FPPAKFLNN---------PGLCGYPLPRCDPSNADGYA 757

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  136 bits (345), Expect = 5e-35
 Identities = 46/133 (34%), Positives = 73/133 (54%), Gaps = 1/133 (0%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
            +  + L    LSG + S LG L+ L+ L+L+ N + G++P+EL  +  L +L L  N+L
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP-TNGSFS 188
            G IP+ L   + L ++ L+NN L GEIP+ +  + +L +L LSNN  +G+IP   G   
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538

Query: 189 LFTPISFANNQLN 201
               +    N  N
Sbjct: 539 SLIWLDLNTNLFN 551

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  135 bits (343), Expect = 9e-35
 Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 2/137 (1%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
            +  + L    L G++  +L  +  L+ L L  N+++G++P  L N TNL  + L  N L
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSL 189
            G IP  +G+L  L  L+L+NNS  G IP  L +  SL  LDL+ N   G IP   +   
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA--AMFK 560

Query: 190 FTPISFANNQLNNPPPS 206
            +    AN         
Sbjct: 561 QSGKIAANFIAGKRYVY 577

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  135 bits (343), Expect = 9e-35
 Identities = 60/139 (43%), Positives = 82/139 (58%), Gaps = 3/139 (2%)

Query: 66  NSENSVTRVDLGNANLSGQLVSQLGQ--LTNLQYLELYSNNISGKVPEELGNLTNLVSLD 123
           N   S+  +DL + N SG ++  L Q     LQ L L +N  +GK+P  L N + LVSL 
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLH 424

Query: 124 LYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT 183
           L  N L+G IP++LG LSKLR L+L  N L GEIP+ L  V +L+ L L  N LTG+IP+
Sbjct: 425 LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPS 484

Query: 184 N-GSFSLFTPISFANNQLN 201
              + +    IS +NN+L 
Sbjct: 485 GLSNCTNLNWISLSNNRLT 503

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  131 bits (332), Expect = 2e-33
 Identities = 51/237 (21%), Positives = 90/237 (37%), Gaps = 59/237 (24%)

Query: 25  ASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCN------------------ 66
           +   E   L + K  L D N +L  W +   NPCT+  VTC                   
Sbjct: 9   SLYREIHQLISFKDVLPDKN-LLPDWSSN-KNPCTFDGVTCRDDKVTSIDLSSKPLNVGF 66

Query: 67  ------------------SEN-------------SVTRVDLGNANLSGQL--VSQLGQLT 93
                             S +             S+T +DL   +LSG +  ++ LG  +
Sbjct: 67  SAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCS 126

Query: 94  NLQYLELYSNNISGKVP-EELGNLTNLVSLDLYLNNLNGPIPTTL---GKLSKLRFLRLN 149
            L++L + SN +           L +L  LDL  N+++G             +L+ L ++
Sbjct: 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186

Query: 150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPS 206
            N + G++   ++   +L+ LD+S+N  +  IP  G  S    +  + N+L+     
Sbjct: 187 GNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR 241

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  131 bits (331), Expect = 3e-33
 Identities = 44/136 (32%), Positives = 63/136 (46%), Gaps = 6/136 (4%)

Query: 72  TRVDLGNANLSGQL-VSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLN 130
             + L     +G++     G    L  L+L  N+  G VP   G+ + L SL L  NN +
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331

Query: 131 GPIPT-TLGKLSKLRFLRLNNNSLMGEIPRSLTNV-NSLQVLDLSNNKLTGDIPT---NG 185
           G +P  TL K+  L+ L L+ N   GE+P SLTN+  SL  LDLS+N  +G I       
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391

Query: 186 SFSLFTPISFANNQLN 201
             +    +   NN   
Sbjct: 392 PKNTLQELYLQNNGFT 407

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  128 bits (323), Expect = 3e-32
 Identities = 46/137 (33%), Positives = 69/137 (50%), Gaps = 5/137 (3%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEE-LGNLTNLVSLDLYLNN 128
           ++T +DL   +  G +    G  + L+ L L SNN SG++P + L  +  L  LDL  N 
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354

Query: 129 LNGPIPTTLGKLS-KLRFLRLNNNSLMGEIPRSLTNV--NSLQVLDLSNNKLTGDIPTN- 184
            +G +P +L  LS  L  L L++N+  G I  +L     N+LQ L L NN  TG IP   
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414

Query: 185 GSFSLFTPISFANNQLN 201
            + S    +  + N L+
Sbjct: 415 SNCSELVSLHLSFNYLS 431

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  126 bits (318), Expect = 2e-31
 Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           ++  +D+ + N S  +   LG  + LQ+L++  N +SG     +   T L  L++  N  
Sbjct: 201 NLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLT-NVNSLQVLDLSNNKLTGDIPTN-GSF 187
            GPIP     L  L++L L  N   GEIP  L+   ++L  LDLS N   G +P   GS 
Sbjct: 260 VGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317

Query: 188 SLFTPISFANNQLN 201
           SL   ++ ++N  +
Sbjct: 318 SLLESLALSSNNFS 331

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  108 bits (272), Expect = 1e-25
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 2/112 (1%)

Query: 75  DLGNANLSGQLVSQLGQLTNLQYLELYSN--NISGKVPEELGNLTNLVSLDLYLNNLNGP 132
            +    ++G+    +      +      N     G   E+L  L+     ++      G 
Sbjct: 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623

Query: 133 IPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN 184
              T      + FL ++ N L G IP+ + ++  L +L+L +N ++G IP  
Sbjct: 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  107 bits (270), Expect = 3e-25
 Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 7/140 (5%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           ++  + L N  L+G++   +G+L NL  L+L +N+ SG +P ELG+  +L+ LDL  N  
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNN--KLTGDIPTN-GS 186
           NG IP  + K S      +  N + G+    + N    +    + N  +  G        
Sbjct: 551 NGTIPAAMFKQSGK----IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606

Query: 187 FSLFTPISFANNQLNNPPPS 206
            S   P +  +         
Sbjct: 607 LSTRNPCNITSRVYGGHTSP 626

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.3 bits (121), Expect = 7e-07
 Identities = 14/71 (19%), Positives = 29/71 (40%)

Query: 138 GKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFAN 197
            K++ +       N     +  SL ++  L+ L LSN+ + G +      +  T +  + 
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109

Query: 198 NQLNNPPPSPP 208
           N L+ P  +  
Sbjct: 110 NSLSGPVTTLT 120

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  110 bits (276), Expect = 3e-26
 Identities = 24/140 (17%), Positives = 53/140 (37%), Gaps = 2/140 (1%)

Query: 69  NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN 128
            S   +DL    L             LQ L+L    I         +L++L +L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTG-DIPTN-GS 186
           +          LS L+ L     +L       + ++ +L+ L++++N +    +P    +
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 187 FSLFTPISFANNQLNNPPPS 206
            +    +  ++N++ +   +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCT 167

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 97.8 bits (244), Expect = 4e-22
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 1/115 (0%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKV-PEELGNLTNLVSLDLYLNN 128
           ++  +D+ + +           L++L+ L++  N+      P+    L NL  LDL    
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT 183
           L    PT    LS L+ L +++N+           +NSLQVLD S N +      
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 95.9 bits (239), Expect = 2e-21
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 2/110 (1%)

Query: 75  DLGNANLSGQLVSQ-LGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPI 133
            +   +     +     +L NL +L+L    +    P    +L++L  L++  NN     
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 510

Query: 134 PTTLGKLSKLRFLRLNNNSLMGEIPRSLTNV-NSLQVLDLSNNKLTGDIP 182
                 L+ L+ L  + N +M    + L +  +SL  L+L+ N       
Sbjct: 511 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 92.0 bits (229), Expect = 3e-20
 Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 4/130 (3%)

Query: 80  NLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPT-TLG 138
           +  G         T+L+YL+L  N +   +      L  L  LD   +NL          
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 139 KLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN--GSFSLFTPISFA 196
            L  L +L +++             ++SL+VL ++ N    +   +        T +  +
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 197 NNQLNNPPPS 206
             QL    P+
Sbjct: 479 QCQLEQLSPT 488

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 11/143 (7%)

Query: 70  SVTRVDL-GNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNL----VSLDL 124
           ++  +++  N   S +L      LTNL++L+L SN I      +L  L  +    +SLDL
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 125 YLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPR-SLTNVNSLQVLDLSNNKLTGDI-- 181
            LN +N   P    ++  L  L L NN     + +  +  +  L+V  L   +   +   
Sbjct: 185 SLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 182 --PTNGSFSLFTPISFANNQLNN 202
                 +      ++    +L  
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAY 266

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 25/166 (15%), Positives = 46/166 (27%), Gaps = 12/166 (7%)

Query: 57  PCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEE-LGN 115
            CT   V          +DL    ++  +     +   L  L L +N  S  V +  +  
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223

Query: 116 LTNLVSLDLYLNNLNG------PIPTTLGKLSKLRFLRLNNNSL---MGEIPRSLTNVNS 166
           L  L    L L              + L  L  L         L   + +I      + +
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283

Query: 167 LQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPPPPLQ 212
           +    L +  +      + +F     +   N +    P      L+
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFGWQH-LELVNCKFGQFPTLKLKSLK 328

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 71.2 bits (175), Expect = 2e-13
 Identities = 26/143 (18%), Positives = 44/143 (30%), Gaps = 14/143 (9%)

Query: 67  SENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYL 126
            E  +  +D         ++     LTN+    L S  I     ++         L+L  
Sbjct: 260 EEFRLAYLDY----YLDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVN 313

Query: 127 NNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGS 186
                     L  L +L F              S  ++ SL+ LDLS N L+     + S
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368

Query: 187 FSLFTP---ISFANNQLNNPPPS 206
               T    +  + N +     +
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSN 391

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  106 bits (266), Expect = 7e-25
 Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 5/149 (3%)

Query: 69  NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN 128
            ++T ++L +  L     +   + + L  L++  N IS   PE    L  L  L+L  N 
Sbjct: 25  TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFS 188
           L+     T    + L  L L +NS+            +L  LDLS+N L+      G+  
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL--GTQV 142

Query: 189 LFTP---ISFANNQLNNPPPSPPPPLQPT 214
                  +  +NN++             +
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANS 171

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  100 bits (252), Expect = 5e-23
 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 6/143 (4%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           ++T + L + ++     +   +  NL  L+L  N +S         L NL  L L  N +
Sbjct: 98  NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157

Query: 130 NGPIPTTLG--KLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSF 187
                  L     S L+ L L++N +    P     +  L  L L+N +L   +      
Sbjct: 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217

Query: 188 SLFTP----ISFANNQLNNPPPS 206
            L       +S +N+QL+    +
Sbjct: 218 ELANTSIRNLSLSNSQLSTTSNT 240

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 96.6 bits (241), Expect = 1e-21
 Identities = 36/135 (26%), Positives = 53/135 (39%), Gaps = 3/135 (2%)

Query: 75  DLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIP 134
           +L +  LS          TNL  L L SN+I            NL++LDL  N L+    
Sbjct: 79  NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138

Query: 135 TTLGKLSKLRFLRLNNNSLMGEIPRSLTNVN--SLQVLDLSNNKLTGDIPTN-GSFSLFT 191
            T  +L  L+ L L+NN +       L      SL+ L+LS+N++    P    +     
Sbjct: 139 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198

Query: 192 PISFANNQLNNPPPS 206
            +   N QL      
Sbjct: 199 GLFLNNVQLGPSLTE 213

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.9 bits (234), Expect = 8e-21
 Identities = 33/153 (21%), Positives = 55/153 (35%), Gaps = 17/153 (11%)

Query: 70  SVTRVDLGNANLSGQLVSQLG---QLTNLQYLELYSNNISGKVPEELGNL--TNLVSLDL 124
            +  + L N  L   L  +L      T+++ L L ++ +S         L  TNL  LDL
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 125 YLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN 184
             NNLN     +   L +L +  L  N++      SL  + +++ L+L  +     I   
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315

Query: 185 GSFSLFTPISFAN-----------NQLNNPPPS 206
            S       SF             N +     +
Sbjct: 316 -SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.5 bits (233), Expect = 1e-20
 Identities = 34/151 (22%), Positives = 55/151 (36%), Gaps = 14/151 (9%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLY---- 125
           ++T +DL   NL+         L  L+Y  L  NNI       L  L N+  L+L     
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308

Query: 126 -----LNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGD 180
                L +L      +   L  L  L + +N + G      T + +L+ L LSN+  +  
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 181 IPTNGSFSLFTPIS-----FANNQLNNPPPS 206
             TN +F               N+++     
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESD 399

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 92.0 bits (229), Expect = 3e-20
 Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 10/145 (6%)

Query: 72  TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNIS--------GKVPEELGNLTNLVSLD 123
           T +DL N N++      L  L  L+ L+L  NN++        G     L  L++L  L+
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 124 LYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT 183
           L  N  +         L +L+ + L  N+L         N  SL+ L+L  N +T     
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602

Query: 184 --NGSFSLFTPISFANNQLNNPPPS 206
               +F   T +    N  +    S
Sbjct: 603 VFGPAFRNLTELDMRFNPFDCTCES 627

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 91.2 bits (227), Expect = 6e-20
 Identities = 31/146 (21%), Positives = 53/146 (36%), Gaps = 8/146 (5%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           S    D  +  L+ Q+   L   TN+  L L  N +           + L SLD+  N +
Sbjct: 5   SHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSL 189
           +   P    KL  L+ L L +N L     ++     +L  L L +N +         F  
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN--NPFVK 119

Query: 190 FT---PISFANNQLNNPPPSPPPPLQ 212
                 +  ++N L++        L+
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLE 145

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 90.1 bits (224), Expect = 1e-19
 Identities = 28/114 (24%), Positives = 40/114 (35%), Gaps = 1/114 (0%)

Query: 75  DLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIP 134
            L      G  +  L  L++L  L L SN       E   +L  L  +DL LNNLN    
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 135 TTLGKLSKLRFLRLNNNSLMGEIPRSL-TNVNSLQVLDLSNNKLTGDIPTNGSF 187
           +       L+ L L  N +     +       +L  LD+  N       +   F
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWF 631

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 89.7 bits (223), Expect = 2e-19
 Identities = 30/156 (19%), Positives = 51/156 (32%), Gaps = 12/156 (7%)

Query: 69  NSVTRVDLGNANLSGQL-VSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLN 127
             +  +DLG   +  +L   +   L N+  + L  N            + +L  L L   
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV 464

Query: 128 NLNG--PIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT---GDIP 182
            L      P+    L  L  L L+NN++       L  +  L++LDL +N L        
Sbjct: 465 ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524

Query: 183 TNGSFSLFTP------ISFANNQLNNPPPSPPPPLQ 212
             G             ++  +N  +  P      L 
Sbjct: 525 PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLF 560

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 89.3 bits (222), Expect = 2e-19
 Identities = 28/119 (23%), Positives = 41/119 (34%), Gaps = 4/119 (3%)

Query: 92  LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIP-TTLGKLSKLRFLRLNN 150
            + L  L L  N IS    +    L +L  LDL LN +   +       L  +  + L+ 
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439

Query: 151 NSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTP---ISFANNQLNNPPPS 206
           N  +     S   V SLQ L L    L     +   F        +  +NN + N    
Sbjct: 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 65.4 bits (160), Expect = 1e-11
 Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 1/113 (0%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
            +  ++L +       V     L  L+ ++L  NN++        N  +L SL+L  N +
Sbjct: 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596

Query: 130 NGPIPTTLGK-LSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDI 181
                   G     L  L +  N            VN +     +  +L+   
Sbjct: 597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (261), Expect = 3e-24
 Identities = 31/152 (20%), Positives = 54/152 (35%), Gaps = 13/152 (8%)

Query: 66  NSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLY 125
           N        +   A            L +L  +ELY+     ++P+ L +L  L SL++ 
Sbjct: 464 NIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523

Query: 126 LNNLNGP---------IPTTLGKLSKLRFLRLNNNSLMGEIPRS--LTNVNSLQVLDLSN 174
            N              +        K++   +  N+L  E P S  L  +  L +LD  +
Sbjct: 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL-EEFPASASLQKMVKLGLLDCVH 582

Query: 175 NKLTGDIPTNGSFSLFTPISFANNQLNNPPPS 206
           NK+   +   G+    T +    NQ+   P  
Sbjct: 583 NKVR-HLEAFGTNVKLTDLKLDYNQIEEIPED 613

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.9 bits (228), Expect = 5e-20
 Identities = 20/142 (14%), Positives = 41/142 (28%), Gaps = 15/142 (10%)

Query: 76  LGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPT 135
               N    +   + +LT LQ +   ++  +           +    +            
Sbjct: 431 GNLTNRITFISKAIQRLTKLQIIYFANSPFTY-----DNIAVDWEDANSDYAKQYENEEL 485

Query: 136 TLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTP--- 192
           +   L  L  + L N   M ++P  L ++  LQ L+++ N+          ++       
Sbjct: 486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545

Query: 193 -------ISFANNQLNNPPPSP 207
                       N L   P S 
Sbjct: 546 TGPKIQIFYMGYNNLEEFPASA 567

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.1 bits (226), Expect = 8e-20
 Identities = 29/151 (19%), Positives = 53/151 (35%), Gaps = 10/151 (6%)

Query: 67  SENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISG-KVPEELGNLTNLVSLDLY 125
           + N         A+ + +L         +Q   +  NN+        L  +  L  LD  
Sbjct: 523 ACNRGISAAQLKADWT-RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCV 581

Query: 126 LNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSL-TNVNSLQVLDLSNNKLTGDIPTN 184
            N +        G   KL  L+L+ N +  EIP       + ++ L  S+NKL   IP  
Sbjct: 582 HNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNI 637

Query: 185 GSFSLFTP---ISFANNQLNNPPPSPPPPLQ 212
            +         + F+ N++ +   +    + 
Sbjct: 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 89.9 bits (223), Expect = 2e-19
 Identities = 27/156 (17%), Positives = 58/156 (37%), Gaps = 16/156 (10%)

Query: 67  SENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEEL--GNLTNLVSLDL 124
           S N +T +     N              L  ++L  N ++  + ++     L  L ++D+
Sbjct: 705 SNNLMTSI---PENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDV 760

Query: 125 YLNNLNGPIPTTLGKLSKLRFLRL------NNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
             N  +   PT     S+L+   +        N ++ + P  +T   SL  L + +N + 
Sbjct: 761 SYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819

Query: 179 GDIPTNGSFSLFTPISFANNQLNN-PPPSPPPPLQP 213
             +    +  L+  +  A+N   +    S  P ++ 
Sbjct: 820 K-VDEKLTPQLYI-LDIADNPNISIDVTSVCPYIEA 853

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 88.0 bits (218), Expect = 8e-19
 Identities = 22/159 (13%), Positives = 49/159 (30%), Gaps = 17/159 (10%)

Query: 64  TCNSENSVTRVDLGNANLSG-QLVSQLGQLTNLQYLELYSNNISGKVPE-----ELGNLT 117
            C   + V  +   +  L     +     +  +  ++   N I  +        +     
Sbjct: 614 FCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

Query: 118 NLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSL-------MGEIPRSLTNVNSLQVL 170
           N  ++ L  N +           S +  + L+NN +       +     +  N   L  +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

Query: 171 DLSNNKLTGDIPTNGSFSLFT---PISFANNQLNNPPPS 206
           DL  NKLT  +  +   +       +  + N  ++ P  
Sbjct: 734 DLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSSFPTQ 771

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.9 bits (210), Expect = 7e-18
 Identities = 28/180 (15%), Positives = 49/180 (27%), Gaps = 15/180 (8%)

Query: 25  ASNAEGDALNALKTNLADPNNVLQSWDA-TLVNPCTWFHVTCNSENSVTRVDLGNANLSG 83
               +  AL A+   L   N    S      ++   W              +        
Sbjct: 266 EYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNW------------NFNKELDMWGD 313

Query: 84  QLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKL 143
           Q    L     +  L L      G+VP+ +G LT L  L    ++          +    
Sbjct: 314 QPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTP 373

Query: 144 RFLRLNNNSLMGEIPR-SLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN 202
                  + +     +  L     L + DL  + +    P        + IS  + Q+ N
Sbjct: 374 DMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAIN-RNPEMKPIKKDSRISLKDTQIGN 432

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.7 bits (160), Expect = 1e-11
 Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 10/115 (8%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLEL------YSNNISGKVPEELGNLTNLVSLD 123
            ++ +D+     S    +Q    + L+   +        N I  + P  +    +L+ L 
Sbjct: 754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812

Query: 124 LYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
           +  N++   +   L    +L  L + +N  +     S+       +  L  +K  
Sbjct: 813 IGSNDIRK-VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 98.3 bits (245), Expect = 4e-23
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 278 FSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVE 337
                L   +       +  RG FG V+K +L     VAVK    +  Q    Q + EV 
Sbjct: 14  LGTENLYFQSMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQDKQ--SWQNEYEVY 70

Query: 338 MISMAVHRNLLRLRGFCMTP----TERLLVYPFMVNGSVASCLRG 378
            +    H N+L+  G          +  L+  F   GS++  L+ 
Sbjct: 71  SLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKA 115

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.0 bits (247), Expect = 2e-22
 Identities = 30/147 (20%), Positives = 55/147 (37%), Gaps = 15/147 (10%)

Query: 72  TRVDLGNANL-SGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLN 130
             + +G  NL +  + + L ++  L  LE   N + G      G+   L SL+L  N + 
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQIT 366

Query: 131 GPIPTTLGKLSKLRFLRLNNNSLMGEIPRSL--TNVNSLQVLDLSNNKLTGDIPTNGSFS 188
                  G   ++  L   +N L   IP      +V+ +  +D S N++   +       
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKL-KYIPNIFDAKSVSVMSAIDFSYNEIGS-VDGKNFDP 424

Query: 189 LFTPI---------SFANNQLNNPPPS 206
           L             + +NNQ++  P  
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKE 451

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 95.9 bits (239), Expect = 2e-21
 Identities = 15/148 (10%), Positives = 40/148 (27%), Gaps = 20/148 (13%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
            + +  + +      +            +   SNNI+  V + +  LT L    +  +  
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF 218

Query: 130 NGPIPTT-------------------LGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVL 170
                                        L  L  + + N   + ++P  L  +  +Q++
Sbjct: 219 VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

Query: 171 DLSNNKLTGDIPTNGSFSLFTPISFANN 198
           +++ N+          +           
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEK 306

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.7 bits (236), Expect = 4e-21
 Identities = 23/191 (12%), Positives = 45/191 (23%), Gaps = 7/191 (3%)

Query: 23  RVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANLS 82
            +  +A      +           L+     L               +    +       
Sbjct: 11  ALTDDAIVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWG 70

Query: 83  GQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGP----IPTTLG 138
            Q    L     +  L L     SG+VP+ +G LT L  L L  +          P  + 
Sbjct: 71  AQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGIS 130

Query: 139 KLSKLRFLRLNNNSLMGEIPRSLTNVN--SLQVLDLSNNKLTGDIPT-NGSFSLFTPISF 195
                   +                 +   L    ++++     I   +      T I  
Sbjct: 131 ANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQ 190

Query: 196 ANNQLNNPPPS 206
            +N +     +
Sbjct: 191 LSNNITFVSKA 201

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.3 bits (235), Expect = 5e-21
 Identities = 23/156 (14%), Positives = 48/156 (30%), Gaps = 19/156 (12%)

Query: 69  NSVTRVDLGNANLSG-QLVSQLGQLTNLQYLELYSNNISG-------KVPEELGNLTNLV 120
             V  +   +  L     +     ++ +  ++   N I          +        N+ 
Sbjct: 377 EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436

Query: 121 SLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSL-------MGEIPRSLTNVNSLQVLDLS 173
           S++L  N ++          S L  + L  N L       + +   +  N   L  +DL 
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 174 NNKLTGDIPTNGSFSLFTPISF---ANNQLNNPPPS 206
            NKLT  +  +   +    +     + N  +  P  
Sbjct: 497 FNKLTK-LSDDFRATTLPYLVGIDLSYNSFSKFPTQ 531

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.1 bits (224), Expect = 1e-19
 Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 11/121 (9%)

Query: 70  SVTRVDLGNANLSGQLVS-QLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSL------ 122
            +T +DL    L+      +   L  L  ++L  N+ S   P +  N + L         
Sbjct: 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547

Query: 123 DLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP 182
           D   N      P  +     L  L++ +N +  ++   +T   ++ VLD+ +N       
Sbjct: 548 DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITP--NISVLDIKDNPNISIDL 604

Query: 183 T 183
           +
Sbjct: 605 S 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.2 bits (180), Expect = 4e-14
 Identities = 15/110 (13%), Positives = 35/110 (31%), Gaps = 10/110 (9%)

Query: 75  DLGNANLSGQLVSQLGQLTNLQYLEL------YSNNISGKVPEELGNLTNLVSLDLYLNN 128
           DL   + S    +Q    + L+   +        N    + PE +    +L  L +  N+
Sbjct: 519 DLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
           +   +   +     +  L + +N  +      +       +  L  +K  
Sbjct: 578 IRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 97.4 bits (243), Expect = 6e-22
 Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 1/145 (0%)

Query: 69  NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN 128
           NS   ++     L     +   +L NL +L+L    I     +   +   L +L L  N 
Sbjct: 33  NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTG-DIPTNGSF 187
           L     T L     L+ L      +       L N  +L+ L L +N ++   +P     
Sbjct: 93  LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

Query: 188 SLFTPISFANNQLNNPPPSPPPPLQ 212
                + F NN ++         LQ
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQ 177

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 93.5 bits (233), Expect = 8e-21
 Identities = 30/145 (20%), Positives = 57/145 (39%), Gaps = 7/145 (4%)

Query: 66  NSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLY 125
             E SV  ++L          +     + LQ L+L + ++S ++P  L  L+ L  L L 
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLS 309

Query: 126 LNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEI-PRSLTNVNSLQVLDLSNNKLTGDIPTN 184
            N        +      L  L +  N+   E+    L N+ +L+ LDLS++ +      N
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 185 GSF----SLFTPISFANNQLNNPPP 205
                   L + ++ + N+  +   
Sbjct: 370 LQLRNLSHLQS-LNLSYNEPLSLKT 393

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.8 bits (218), Expect = 7e-19
 Identities = 26/150 (17%), Positives = 45/150 (30%), Gaps = 6/150 (4%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           ++  +      +S      L     L+ L L SN+IS     +      L  LD   N +
Sbjct: 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165

Query: 130 NGPIPTTLGKLSKLR--FLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSF 187
           +      +  L +     L LN N +   I     +    Q L+    +    I      
Sbjct: 166 HYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224

Query: 188 SLFT---PISFANNQLNNPPPSPPPPLQPT 214
           S        +F +    +  P+    L   
Sbjct: 225 STIQSLWLGTFEDMDDEDISPAVFEGLCEM 254

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.0 bits (216), Expect = 1e-18
 Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 7/143 (4%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEE-LGNLTNLVSLDLYLNN 128
           ++ ++ L                 +L +L +  N    ++    L NL NL  LDL  ++
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 129 LN--GPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGS 186
           +         L  LS L+ L L+ N  +     +      L++LDL+  +L         
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV-KDAQSP 420

Query: 187 FSLFT---PISFANNQLNNPPPS 206
           F        ++ +++ L+     
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQ 443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 86.2 bits (214), Expect = 3e-18
 Identities = 28/145 (19%), Positives = 45/145 (31%), Gaps = 13/145 (8%)

Query: 67  SENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYL 126
           S + +   D  N  L          L++LQ L L  N       E       L  LDL  
Sbjct: 358 SHDDIETSDCCNLQLRN--------LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409

Query: 127 NNLNG-PIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP-TN 184
             L      +    L  L+ L L+++ L     +    + +LQ L+L  N          
Sbjct: 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKT 469

Query: 185 GSFSLFTPISF---ANNQLNNPPPS 206
            S      +     +   L++    
Sbjct: 470 NSLQTLGRLEILVLSFCDLSSIDQH 494

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.8 bits (213), Expect = 3e-18
 Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 2/134 (1%)

Query: 75  DLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIP 134
            L    L     + L     L++L      IS      L N   L SL L  N+++    
Sbjct: 87  VLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL 146

Query: 135 TTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQV--LDLSNNKLTGDIPTNGSFSLFTP 192
                  KL+ L   NN++       ++++       L+L+ N + G  P     ++F  
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206

Query: 193 ISFANNQLNNPPPS 206
           ++F   Q       
Sbjct: 207 LNFGGTQNLLVIFK 220

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.5 bits (212), Expect = 4e-18
 Identities = 33/144 (22%), Positives = 56/144 (38%), Gaps = 4/144 (2%)

Query: 72  TRVDLGNANLSGQLV-SQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLN 130
             +DL    L  +   S    L  L+ L L  + +     +    L  L  L+L  N+  
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 131 GPI---PTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSF 187
                   +L  L +L  L L+   L      + T++  +  +DLS+N+LT       S 
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 188 SLFTPISFANNQLNNPPPSPPPPL 211
                ++ A+N ++   PS  P L
Sbjct: 523 LKGIYLNLASNHISIILPSLLPIL 546

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 85.1 bits (211), Expect = 5e-18
 Identities = 24/151 (15%), Positives = 45/151 (29%), Gaps = 10/151 (6%)

Query: 64  TCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLD 123
                N     +  N  L+ ++   L    + + LE   N +          L NL  LD
Sbjct: 9   IEKEVNKT--YNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLD 63

Query: 124 LYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT 183
           L    +      T     +L  L L  N L+     +L+   +L+ L      ++     
Sbjct: 64  LTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF- 122

Query: 184 NGSFSLFTP---ISFANNQLNNPPPSPPPPL 211
                       +   +N +++       P 
Sbjct: 123 -IPLHNQKTLESLYLGSNHISSIKLPKGFPT 152

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 4/135 (2%)

Query: 75  DLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIP 134
           D+ + ++S  +   L ++ +++ + L  +             + L  LDL   +L+  +P
Sbjct: 237 DMDDEDISPAVFEGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-LP 294

Query: 135 TTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLF--TP 192
           + L  LS L+ L L+ N        S +N  SL  L +  N    ++ T    +L     
Sbjct: 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354

Query: 193 ISFANNQLNNPPPSP 207
           +  +++ +       
Sbjct: 355 LDLSHDDIETSDCCN 369

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 4/115 (3%)

Query: 69  NSVTRVDLGNANLSG---QLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLY 125
            ++  ++L   +      Q  + L  L  L+ L L   ++S        +L  +  +DL 
Sbjct: 449 PALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508

Query: 126 LNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGD 180
            N L       L  L  +  L L +N +   +P  L  ++  + ++L  N L   
Sbjct: 509 HNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 8/135 (5%)

Query: 78  NANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGN--LTNLVSLDLYLNNLNGPIPT 135
           N N    +          Q L          + + L N  + +L        +     P 
Sbjct: 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246

Query: 136 TLGKLSK--LRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLF--T 191
               L +  +  + L  +        +    + LQ LDL+   L+ ++P +G   L    
Sbjct: 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP-SGLVGLSTLK 304

Query: 192 PISFANNQLNNPPPS 206
            +  + N+  N    
Sbjct: 305 KLVLSANKFENLCQI 319

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 96.3 bits (240), Expect = 1e-21
 Identities = 28/151 (18%), Positives = 53/151 (35%), Gaps = 4/151 (2%)

Query: 69  NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN 128
           +S   +DL    L           + LQ+L+L    I     +    L +L +L L  N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFS 188
           +    P +   L+ L  L      L       +  + +L+ L++++N +         FS
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFS 150

Query: 189 LFT---PISFANNQLNNPPPSPPPPLQPTPP 216
             T    +  + N +     +    L+  P 
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQ 181

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 85.9 bits (213), Expect = 3e-18
 Identities = 29/136 (21%), Positives = 49/136 (36%), Gaps = 6/136 (4%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEE-LGNLTNLVSLDLYLNN 128
            +  +D+   N           LT+L  L++  N+           N TNL  LDL    
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQ 484

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFS 188
           L          L +L+ L +++N+L+         + SL  LD S N++           
Sbjct: 485 LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET--SKGILQH 542

Query: 189 LFTPISF---ANNQLN 201
               ++F    NN + 
Sbjct: 543 FPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 79.7 bits (197), Expect = 3e-16
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 8/149 (5%)

Query: 70  SVTRVDLGNANLS--GQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLN 127
           S++ +DL    LS  G          +L++L+L  N     +      L  L  LD   +
Sbjct: 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHS 409

Query: 128 NLNGPIPT-TLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN-- 184
            L           L KL +L ++  +   +       + SL  L ++ N    +  +N  
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469

Query: 185 -GSFSLFTPISFANNQLNNPPPSPPPPLQ 212
             + +L   +  +  QL          L 
Sbjct: 470 ANTTNLTF-LDLSKCQLEQISWGVFDTLH 497

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 68.9 bits (169), Expect = 8e-13
 Identities = 28/165 (16%), Positives = 48/165 (29%), Gaps = 11/165 (6%)

Query: 57  PCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEE-LGN 115
                     +      +D+   N    +  Q  Q   L  L L  N  S  + +  L N
Sbjct: 169 TVNDLQFLRENPQVNLSLDMSL-NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQN 227

Query: 116 LTNLVSLDLY------LNNLNGPIPTTLGKLSKLRF--LRLNNNSLMGEIPRSLTNVNSL 167
           L  L    L         NL    P+ +  L  +     RL   +   +       + ++
Sbjct: 228 LAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANV 287

Query: 168 QVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPPPPLQ 212
             + L+   +         F   + +S    QL   P    P L+
Sbjct: 288 SAMSLAGVSIKYLEDVPKHFKWQS-LSIIRCQLKQFPTLDLPFLK 331

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 29/143 (20%), Positives = 55/143 (38%), Gaps = 11/143 (7%)

Query: 70  SVTRVDLGNANLSG-QLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNL----VSLDL 124
           ++ ++++ +  +   +L +    LTNL +++L  N I      +L  L       +SLD+
Sbjct: 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188

Query: 125 YLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPR-SLTNVNSLQVLDLSNNKLTGD--- 180
            LN ++  I     +  KL  L L  N     I +  L N+  L V  L   +   +   
Sbjct: 189 SLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

Query: 181 -IPTNGSFSLFTPISFANNQLNN 202
            I           ++    +L  
Sbjct: 248 EIFEPSIMEGLCDVTIDEFRLTY 270

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 29/139 (20%), Positives = 52/139 (37%), Gaps = 11/139 (7%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           +V+ + L   ++    +  + +    Q L +    +         +L  L SL L +N  
Sbjct: 286 NVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPT---LDLPFLKSLTLTMNKG 340

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVN--SLQVLDLSNNKLTGDIPT-NGS 186
           +  I      L  L +L L+ N+L      S +++   SL+ LDLS N          G 
Sbjct: 341 S--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGL 398

Query: 187 FSLFTPISFANNQLNNPPP 205
             L   + F ++ L     
Sbjct: 399 EELQH-LDFQHSTLKRVTE 416

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.4 bits (225), Expect = 2e-20
 Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 3/147 (2%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           ++  + L    +   L + +  L NL+ L++ ++ +S  +   + +L  L  LDL     
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN-GSFS 188
               P   G  + L+ L L + S +  +P  +  +  L+ LDL        +P+      
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301

Query: 189 LFTPISFANNQLNNPPPSPPPPLQPTP 215
               I    +         P      P
Sbjct: 302 ANCIILVPPHLQAQLDQHRPVARPAEP 328

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.7 bits (192), Expect = 5e-16
 Identities = 26/134 (19%), Positives = 48/134 (35%), Gaps = 15/134 (11%)

Query: 85  LVSQLGQLT--NLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSK 142
               L   T      LEL S  +  + P++   L++L  + +    L   +P T+ + + 
Sbjct: 71  TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAG 128

Query: 143 LRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN-GSFSLFTPISF------ 195
           L  L L  N L   +P S+ ++N L+ L +       ++P    S               
Sbjct: 129 LETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187

Query: 196 ---ANNQLNNPPPS 206
                  + + P S
Sbjct: 188 LRLEWTGIRSLPAS 201

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.3 bits (191), Expect = 7e-16
 Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 15/116 (12%)

Query: 80  NLSG-QLVS---QLGQLTNLQYLELYSNNISGKVPEELGN---------LTNLVSLDLYL 126
            L+   L +    +  L  L+ L + +     ++PE L +         L NL SL L  
Sbjct: 133 TLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192

Query: 127 NNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP 182
             +   +P ++  L  L+ L++ N+ L   +  ++ ++  L+ LDL       + P
Sbjct: 193 TGIRS-LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYP 246

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 74.2 bits (183), Expect = 7e-15
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 76  LGNANLSG-QLVSQLGQLTNLQYLELYSNNISGKVPEELGNLT--NLVSLDLYLNNLNGP 132
             NA+ +      +     N Q        +     + L + T    V+L+L    L   
Sbjct: 38  HYNADRNRWHSAWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLPQ- 95

Query: 133 IPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
            P    +LS L+ + ++   LM E+P ++     L+ L L+ N L 
Sbjct: 96  FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR 140

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 8/92 (8%), Positives = 20/92 (21%), Gaps = 7/92 (7%)

Query: 89  LGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL 148
               +  + L    +       + L       + D    +            +  +    
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETR 63

Query: 149 NNNSLMGEIPRSLTNVNS--LQVLDLSNNKLT 178
              +L       L +        L+L +  L 
Sbjct: 64  TGRALK-ATADLLEDATQPGRVALELRSVPLP 94

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 87.3 bits (217), Expect = 2e-20
 Identities = 21/107 (19%), Positives = 49/107 (45%), Gaps = 3/107 (2%)

Query: 72  TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNG 131
             + + N + +    + +  L+NL+ L +   +++      L  LT+L  LD+  +  + 
Sbjct: 69  KDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 132 PIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
            I T +  L K+  + L+ N  + +I   L  +  L+ L++  + + 
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 85.0 bits (211), Expect = 2e-19
 Identities = 23/134 (17%), Positives = 58/134 (43%), Gaps = 4/134 (2%)

Query: 69  NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN 128
           NS+T + L N N++   ++ +    N++ L + + + +      +  L+NL  L +   +
Sbjct: 44  NSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKD 99

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFS 188
           +       L  L+ L  L +++++    I   +  +  +  +DLS N    DI    +  
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLP 159

Query: 189 LFTPISFANNQLNN 202
               ++   + +++
Sbjct: 160 ELKSLNIQFDGVHD 173

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.1 bits (175), Expect = 1e-14
 Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 4/95 (4%)

Query: 90  GQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN 149
            Q+ +L Y+ L + N++      +    N+  L +   +     P  +  LS L  LR+ 
Sbjct: 41  AQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIM 96

Query: 150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN 184
              +  +   +L+ + SL +LD+S++     I T 
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 14/118 (11%), Positives = 41/118 (34%), Gaps = 8/118 (6%)

Query: 91  QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNN 150
                    L  ++ +         + +L  + L   N+       +     ++ L +NN
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINN 75

Query: 151 NSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN-GSFSLFTPISFANNQLNNPPPSP 207
                  P  ++ +++L+ L +    +T D   N    +  T +  +++  ++   + 
Sbjct: 76  IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 88.8 bits (221), Expect = 9e-20
 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 7/129 (5%)

Query: 72  TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNG 131
             + +GN  ++   +S L  L+ L +LE+ +N IS      + +LT L  L++  N ++ 
Sbjct: 224 NSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD 279

Query: 132 PIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFT 191
                L  LS+L  L LNNN L  E    +  + +L  L LS N +T   P      + +
Sbjct: 280 ISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDS 337

Query: 192 PISFANNQL 200
              FAN  +
Sbjct: 338 -ADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 88.0 bits (219), Expect = 2e-19
 Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 8/137 (5%)

Query: 69  NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN 128
            S+T++ +    ++   +  +  LTNL+YL L  N I+      L NL  L +L +  N 
Sbjct: 44  ESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNK 99

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFS 188
           +     + L  L+ LR L LN +++    P  L N+  +  L+L  N    D+    + +
Sbjct: 100 IT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMT 155

Query: 189 LFTPISFANNQLNNPPP 205
               ++   +++ +  P
Sbjct: 156 GLNYLTVTESKVKDVTP 172

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 87.2 bits (217), Expect = 3e-19
 Identities = 29/134 (21%), Positives = 61/134 (45%), Gaps = 9/134 (6%)

Query: 72  TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNG 131
             + +  + +    V+ +  LT+L  L L  N I       L +LT+L     Y+N +  
Sbjct: 158 NYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITD 213

Query: 132 PIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFT 191
             P  +  +++L  L++ NN +    P  L N++ L  L++  N+++ DI      +   
Sbjct: 214 ITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS-DINAVKDLTKLK 268

Query: 192 PISFANNQLNNPPP 205
            ++  +NQ+++   
Sbjct: 269 MLNVGSNQISDISV 282

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 84.9 bits (211), Expect = 2e-18
 Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 72  TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNG 131
           T +++G   +S   ++ +  LT L+ L + SN IS      L NL+ L SL L  N L  
Sbjct: 246 TWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGN 301

Query: 132 PIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
                +G L+ L  L L+ N +    P  L +++ +   D +N  + 
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.9 bits (185), Expect = 5e-15
 Identities = 21/120 (17%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 86  VSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRF 145
           +     L       L   +++         L ++  L +    +       +  L+ L +
Sbjct: 15  IFPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVASIQG--IEYLTNLEY 70

Query: 146 LRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPP 205
           L LN N +    P  L+N+  L  L +  NK+T DI    + +    +    + +++  P
Sbjct: 71  LNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISALQNLTNLRELYLNEDNISDISP 127

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 65.6 bits (161), Expect = 5e-12
 Identities = 16/111 (14%), Positives = 39/111 (35%), Gaps = 7/111 (6%)

Query: 95  LQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLM 154
              L      I+        +L   +   L   ++   +     +L  +  L +    + 
Sbjct: 2   AATLATLPAPIN--QIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV- 56

Query: 155 GEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPP 205
             I   +  + +L+ L+L+ N++T DI    +    T +    N++ +   
Sbjct: 57  ASIQ-GIEYLTNLEYLNLNGNQIT-DISPLSNLVKLTNLYIGTNKITDISA 105

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 89.8 bits (223), Expect = 1e-19
 Identities = 26/141 (18%), Positives = 52/141 (36%), Gaps = 4/141 (2%)

Query: 69  NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN 128
            S   +DL    L             LQ L+L    I         +L++L +L L  N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFS 188
           +          LS L+ L     +L       + ++ +L+ L++++N +         FS
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFS 146

Query: 189 LFT---PISFANNQLNNPPPS 206
             T    +  ++N++ +   +
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCT 167

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.3 bits (188), Expect = 3e-15
 Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 8/125 (6%)

Query: 87  SQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNG-PIPTTLGKLSKLRF 145
                 T+L+YL+L  N +   +      L  L  LD   +NL      +    L  L +
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425

Query: 146 LRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSF----SLFTPISFANNQLN 201
           L +++             ++SL+VL ++ N    +      F    +L   +  +  QL 
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTF-LDLSQCQLE 483

Query: 202 NPPPS 206
              P+
Sbjct: 484 QLSPT 488

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 1/114 (0%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEE-LGNLTNLVSLDLYLNN 128
           ++  +D+ + +           L++L+ L++  N+       +    L NL  LDL    
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP 182
           L    PT    LS L+ L + +N L          + SLQ + L  N      P
Sbjct: 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 31/148 (20%), Positives = 58/148 (39%), Gaps = 11/148 (7%)

Query: 70  SVTRVDLGNANL-SGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNL----VSLDL 124
           ++  +++ +  + S +L      LTNL++L+L SN I      +L  L  +    +SLDL
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 125 YLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPR-SLTNVNSLQVLDLSNNKLTGD--- 180
            LN +N  I     K  +L  L L NN     + +  +  +  L+V  L   +   +   
Sbjct: 185 SLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 181 -IPTNGSFSLFTPISFANNQLNNPPPSP 207
                 +      ++    +L       
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYL 271

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 39/172 (22%), Positives = 58/172 (33%), Gaps = 17/172 (9%)

Query: 38  TNLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQY 97
            NL      L   D  L +    F+   N    V+   L +  +    V         Q+
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTN----VSSFSLVSVTIER--VKDFSYNFGWQH 308

Query: 98  LELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSL--MG 155
           LEL +         +L +L     L    N        +   L  L FL L+ N L   G
Sbjct: 309 LELVNCKFGQFPTLKLKSLK---RLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKG 363

Query: 156 EIPRSLTNVNSLQVLDLSNNKLTGDIPTN--GSFSLFTPISFANNQLNNPPP 205
              +S     SL+ LDLS N +   + +N  G   L   + F ++ L     
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEH-LDFQHSNLKQMSE 413

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 27/160 (16%), Positives = 50/160 (31%), Gaps = 14/160 (8%)

Query: 56  NPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQ-LGQLTNLQYLELY------SNNISGK 108
           NP  +       E  + ++ L N   S  ++   +  L  L+   L         N+   
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 109 VPEELGNLTNLVSLDLYLNNLNG---PIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVN 165
               L  L NL   +  L  L+     I      L+ +    L + ++   +    +   
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVK-DFSYNF 304

Query: 166 SLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPP 205
             Q L+L N K                ++F +N+  N   
Sbjct: 305 GWQHLELVNCKFGQ--FPTLKLKSLKRLTFTSNKGGNAFS 342

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 88.1 bits (219), Expect = 4e-19
 Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 9/136 (6%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
              +  LG  N++         L  +  L+     I     + +  L NL  ++   N L
Sbjct: 25  EKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQL 80

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSL 189
               P  L  L+KL  + +NNN +    P  L N+ +L  L L NN++T DI    + + 
Sbjct: 81  TDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT-DIDPLKNLTN 135

Query: 190 FTPISFANNQLNNPPP 205
              +  ++N +++   
Sbjct: 136 LNRLELSSNTISDISA 151

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 87.7 bits (218), Expect = 5e-19
 Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 9/134 (6%)

Query: 72  TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNG 131
           T +DL N  +S   ++ L  LT L  L+L +N IS      L  LT L +L+L  N L  
Sbjct: 246 TDLDLANNQISN--LAPLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED 301

Query: 132 PIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFT 191
             P  +  L  L +L L  N++    P  ++++  LQ L   NNK++ D+ +  + +   
Sbjct: 302 ISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVS-DVSSLANLTNIN 356

Query: 192 PISFANNQLNNPPP 205
            +S  +NQ+++  P
Sbjct: 357 WLSAGHNQISDLTP 370

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 10/136 (7%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           ++ R++L +  +S   +S L  LT+LQ L    N ++    + L NLT L  LD+  N +
Sbjct: 135 NLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTD--LKPLANLTTLERLDISSNKV 189

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSL 189
           +      L KL+ L  L   NN +    P  L  + +L  L L+ N+L  DI T  S + 
Sbjct: 190 SDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIGTLASLTN 244

Query: 190 FTPISFANNQLNNPPP 205
            T +  ANNQ++N  P
Sbjct: 245 LTDLDLANNQISNLAP 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 32/136 (23%), Positives = 52/136 (38%), Gaps = 8/136 (5%)

Query: 69  NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN 128
            ++T ++L    L    +S +  L NL YL LY NNIS      + +LT L  L  Y N 
Sbjct: 287 TALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFYNNK 342

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFS 188
           ++      L  L+ + +L   +N +    P  L N+  +  L L++   T       +  
Sbjct: 343 VSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANV 398

Query: 189 LFTPISFANNQLNNPP 204
                          P
Sbjct: 399 SIPNTVKNVTGALIAP 414

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.9 bits (190), Expect = 2e-15
 Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 7/120 (5%)

Query: 86  VSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRF 145
           +     L       L   N++  V     +L  + +L      +       +  L+ L  
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQ 72

Query: 146 LRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPP 205
           +  +NN L    P  L N+  L  + ++NN++  DI    + +  T ++  NNQ+ +  P
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITPLANLTNLTGLTLFNNQITDIDP 129

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.2 bits (170), Expect = 6e-13
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 6/132 (4%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
            + R+   N  +S   VS L  LTN+ +L    N IS      L NLT +  L L     
Sbjct: 332 KLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAW 387

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSL 189
                     +S    ++    +L+   P ++++  S    D++ N  +     + +FS 
Sbjct: 388 TNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSYTNEVSYTFSQ 445

Query: 190 FTPISFANNQLN 201
              I       +
Sbjct: 446 PVTIGKGTTTFS 457

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.7 bits (148), Expect = 3e-10
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 5/107 (4%)

Query: 99  ELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIP 158
              + +           L   +   L   N+   +      L ++  L+ +   +  +  
Sbjct: 6   ATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI--KSI 61

Query: 159 RSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPP 205
             +  +N+L  ++ SNN+LT DI    + +    I   NNQ+ +  P
Sbjct: 62  DGVEYLNNLTQINFSNNQLT-DITPLKNLTKLVDILMNNNQIADITP 107

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 13/114 (11%), Positives = 32/114 (28%), Gaps = 5/114 (4%)

Query: 69  NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN 128
            ++  +  G+  +S   ++ L  LT +  L L     +        N++   ++      
Sbjct: 353 TNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGA 410

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP 182
           L    P T+          +  N             +    +       +G + 
Sbjct: 411 LI--APATISDGGSYTEPDITWNLP-SYTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 86.8 bits (215), Expect = 4e-19
 Identities = 31/107 (28%), Positives = 42/107 (39%), Gaps = 12/107 (11%)

Query: 278 FSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVE 337
            +  E  +  DN     ++GRG +G VYKG L D   VAVK       Q     F  E  
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQ----NFINEKN 57

Query: 338 MISMAV--HRNLLRLRGFCMTP-----TERLLVYPFMVNGSVASCLR 377
           +  + +  H N+ R              E LLV  +  NGS+   L 
Sbjct: 58  IYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLS 104

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 83.5 bits (207), Expect = 4e-18
 Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 9/137 (6%)

Query: 69  NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN 128
           N      + +++L   L S      N++ L+L  N +S     +L   T L  L+L  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFS 188
           L   +   L  LS LR L LNNN +     + L    S++ L  +NN ++  +  +    
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCS-RGQ 120

Query: 189 LFTPISFANNQLNNPPP 205
               I  ANN++     
Sbjct: 121 GKKNIYLANNKITMLRD 137

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 4/114 (3%)

Query: 89  LGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL 148
                 L++L L  N I   V  ++     L +LDL  N L   +       + + ++ L
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL 221

Query: 149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN 202
            NN L+  I ++L    +L+  DL  N        +         + A   +  
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 75.0 bits (185), Expect = 3e-15
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 92  LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN 151
               +  ++  +++   +     +  N+  LDL  N L+      L   +KL  L L++N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 152 SLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPPPPL 211
            L  E    L ++++L+ LDL+NN +  ++      S+   +  ANN ++    S     
Sbjct: 69  VL-YETL-DLESLSTLRTLDLNNNYVQ-ELLVGP--SI-ETLHAANNNISRVSCSRGQGK 122

Query: 212 Q 212
           +
Sbjct: 123 K 123

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.5 bits (181), Expect = 9e-15
 Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 5/120 (4%)

Query: 89  LGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNG-PIPTTLGKLSKLRFLR 147
             +    + + L +N I+     + G  + +  LDL LN ++             L  L 
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN-GSFSLFTPISFANNQLNNPPPS 206
           L  N +  ++         L+ LDLS+NKL   +     S +  T IS  NN+L     +
Sbjct: 176 LQYNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVLIEKA 232

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 1/98 (1%)

Query: 110 PEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQV 169
            E   N        +  ++L   + +       ++ L L+ N L       L     L++
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 170 LDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSP 207
           L+LS+N L  +     S S    +   NN +      P
Sbjct: 63  LNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQELLVGP 99

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 14/76 (18%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 133 IPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFT- 191
           I       ++ +  ++ ++SL   +     +  +++ LDLS N L+  I      + FT 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QIS-AADLAPFTK 59

Query: 192 --PISFANNQLNNPPP 205
              ++ ++N L     
Sbjct: 60  LELLNLSSNVLYETLD 75

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 84.1 bits (208), Expect = 1e-17
 Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 9/137 (6%)

Query: 69  NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN 128
           N      + +++L   L S      N++ L+L  N +S     +L   T L  L+L  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFS 188
           L   +   L  LS LR L LNNN +     + L    S++ L  +NN ++  +       
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSC-SRGQ 120

Query: 189 LFTPISFANNQLNNPPP 205
               I  ANN++     
Sbjct: 121 GKKNIYLANNKITMLRD 137

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 78.0 bits (192), Expect = 8e-16
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 4/124 (3%)

Query: 89  LGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL 148
                 L++L L  N I   V  ++     L +LDL  N L   +       + + ++ L
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISL 221

Query: 149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPP 208
            NN L+  I ++L    +L+  DL  N        +         + A   +        
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 209 PPLQ 212
               
Sbjct: 281 EECT 284

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 74.9 bits (184), Expect = 9e-15
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 92  LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN 151
               +  ++  +++   +     +  N+  LDL  N L+      L   +KL  L L++N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 152 SLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPPPPL 211
            L  E    L ++++L+ LDL+NN +  ++    S      +  ANN ++    S     
Sbjct: 69  VL-YETL-DLESLSTLRTLDLNNNYVQ-ELLVGPS---IETLHAANNNISRVSCSRGQGK 122

Query: 212 Q 212
           +
Sbjct: 123 K 123

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.6 bits (173), Expect = 2e-13
 Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 4/111 (3%)

Query: 69  NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISG-KVPEELGNLTNLVSLDLYLN 127
                + L N  ++       G  + +QYL+L  N I      E   +   L  L+L  N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 128 NLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
            +   +   +   +KL+ L L++N L   +     +   +  + L NNKL 
Sbjct: 180 FIYD-VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV 227

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.3 bits (172), Expect = 3e-13
 Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 14/135 (10%)

Query: 75  DLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIP 134
           +L +  L       L  L+ L+ L+L +N +      EL    ++ +L    NN++  + 
Sbjct: 64  NLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR-VS 115

Query: 135 TTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFT--- 191
               +    + + L NN +           + +Q LDL  N++   +      +      
Sbjct: 116 --CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLE 172

Query: 192 PISFANNQLNNPPPS 206
            ++   N + +    
Sbjct: 173 HLNLQYNFIYDVKGQ 187

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.6 bits (152), Expect = 8e-11
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 1/99 (1%)

Query: 109 VPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQ 168
           + E   N        +  ++L   + +       ++ L L+ N L       L     L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 169 VLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSP 207
           +L+LS+N L  +     S S    +   NN +      P
Sbjct: 62  LLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQELLVGP 99

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 12/102 (11%), Positives = 25/102 (24%), Gaps = 1/102 (0%)

Query: 78  NANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYL-NNLNGPIPTT 136
              L+GQ   +    T   Y      ++     + L  L       L    +    +   
Sbjct: 272 VKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECE 331

Query: 137 LGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
               ++ R +          I +      +   L+     L 
Sbjct: 332 RENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 13/158 (8%), Positives = 40/158 (25%), Gaps = 1/158 (0%)

Query: 21  LLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNAN 80
           +  VA           +     P             P  +       +     +  G  +
Sbjct: 264 VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGS 323

Query: 81  LSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKL 140
            + +L  +       + ++         + +        ++L+     L+  +       
Sbjct: 324 ETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAH 383

Query: 141 SKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
           ++L          + E+  +    + LQ+L     +  
Sbjct: 384 AELDGTLQQAVGQI-ELQHATEEQSPLQLLRAIVKRYE 420

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 3/126 (2%)

Query: 254 KPEDHFFDVPAEEDPEVHLGQLK-RFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDG 312
           K   H   +   + P       +      ++ +   + + +  +G G FG V++     G
Sbjct: 2   KHHHHHHPMSDYDIPTTENLYFQGAMDGDDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HG 60

Query: 313 SLVAVKRLKEERTQGGELQ-FQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGS 371
           S VAVK L E+      +  F  EV ++    H N++   G    P    +V  ++  GS
Sbjct: 61  SDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEYLSRGS 120

Query: 372 VASCLR 377
           +   L 
Sbjct: 121 LYRLLH 126

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 78.6 bits (193), Expect = 7e-16
 Identities = 27/135 (20%), Positives = 57/135 (42%), Gaps = 9/135 (6%)

Query: 71  VTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLN 130
             + +L   +++        +L ++  +   +++I   V + +  L N+  L L  N L 
Sbjct: 23  TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT 78

Query: 131 GPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLF 190
              P  L  L  L +L L+ N +  ++  SL ++  L+ L L +N ++ DI         
Sbjct: 79  DIKP--LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGIS-DINGLVHLPQL 133

Query: 191 TPISFANNQLNNPPP 205
             +   NN++ +   
Sbjct: 134 ESLYLGNNKITDITV 148

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 76.7 bits (188), Expect = 3e-15
 Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 7/126 (5%)

Query: 86  VSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRF 145
           +S L  L  L+ L L  N IS      L +L  L SL L  N +       L +L+KL  
Sbjct: 102 LSSLKDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDT 157

Query: 146 LRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPP 205
           L L +N +  +I   L  +  LQ L LS N ++ D+           +   + +  N P 
Sbjct: 158 LSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPI 214

Query: 206 SPPPPL 211
           +    L
Sbjct: 215 NHQSNL 220

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 76.3 bits (187), Expect = 4e-15
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 9/143 (6%)

Query: 63  VTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSL 122
           VT N  NS+ ++   N+++    V  +  L N+  L L  N ++    + L NL NL  L
Sbjct: 37  VTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNGNKLT--DIKPLTNLKNLGWL 92

Query: 123 DLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP 182
            L  N +       L  L KL+ L L +N +  +I   L ++  L+ L L NNK+T DI 
Sbjct: 93  FLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-DIN-GLVHLPQLESLYLGNNKIT-DIT 147

Query: 183 TNGSFSLFTPISFANNQLNNPPP 205
                +    +S  +NQ+++  P
Sbjct: 148 VLSRLTKLDTLSLEDNQISDIVP 170

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 4/88 (4%)

Query: 294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGEL---QFQTEVEMISMAVHRNLLRL 350
            I+G GGFGKVY+     G  VAVK  + +  +         + E ++ +M  H N++ L
Sbjct: 13  EIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIAL 71

Query: 351 RGFCMTPTERLLVYPFMVNGSVASCLRG 378
           RG C+      LV  F   G +   L G
Sbjct: 72  RGVCLKEPNLCLVMEFARGGPLNRVLSG 99

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.5 bits (191), Expect = 2e-15
 Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 8/150 (5%)

Query: 70  SVTRVDLGNANLSG-QLVSQLGQLTNLQYLELYSNNISGKVPEEL-GNLTNLVSLDLYLN 127
           +   + L    L    ++  L ++ +LQ L L  N  S    ++      +L  L L  N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461

Query: 128 NLNGPIPT-----TLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP 182
            L     T         LS L+ L LN+N L    P   +++ +L+ L L++N+LT  + 
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLS 520

Query: 183 TNGSFSLFTPISFANNQLNNPPPSPPPPLQ 212
            N   +    +  + NQL  P P     L 
Sbjct: 521 HNDLPANLEILDISRNQLLAPNPDVFVSLS 550

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 10/148 (6%)

Query: 64  TCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLD 123
           +C+ +  +        NL+   V Q+  L   + L L  N I          L  L  L+
Sbjct: 1   SCSFDGRI--AFYRFCNLTQ--VPQV--LNTTERLLLSFNYIRTVTASSFPFLEQLQLLE 54

Query: 124 LYLNNLNGPI-PTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP 182
           L        I       L  LR L L ++ +    P +   +  L  L L    L+  + 
Sbjct: 55  LGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVL 114

Query: 183 TNGSFSLFT---PISFANNQLNNPPPSP 207
            +G F        +  + NQ+ +    P
Sbjct: 115 KDGYFRNLKALTRLDLSKNQIRSLYLHP 142

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 76.0 bits (187), Expect = 6e-15
 Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 4/135 (2%)

Query: 68  ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLN 127
            +SV  +DL +  +          L +L+ L L  N I+    E    L NL  L+L  N
Sbjct: 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324

Query: 128 NLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSF 187
            L     +    L K+ ++ L  N +     ++   +  LQ LDL +N LT         
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIP 384

Query: 188 SLFTPISFANNQLNN 202
            +F     + N+L  
Sbjct: 385 DIF----LSGNKLVT 395

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.2 bits (159), Expect = 2e-11
 Identities = 30/153 (19%), Positives = 51/153 (33%), Gaps = 9/153 (5%)

Query: 67  SENSVTRVDLGNA--NLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNL--TNLVSL 122
           S N  T    GN    +S      L    ++       +NI          L  +++  L
Sbjct: 212 SGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHL 271

Query: 123 DLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP 182
           DL    +          L  L+ L L  N +      +   +++LQVL+LS N L  ++ 
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-ELY 330

Query: 183 TNGSFSLFTP---ISFANNQLNNPPPSPPPPLQ 212
            + +F        I    N +          L+
Sbjct: 331 -SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.0 bits (122), Expect = 5e-07
 Identities = 29/163 (17%), Positives = 53/163 (32%), Gaps = 28/163 (17%)

Query: 70  SVTRVDLGNANLSG-QLVSQLGQLTNLQYLELYSNNISGKVPEELGNLT--NLVSLDLYL 126
           ++TR+DL    +    L    G+L +L+ ++  SN I      EL  L    L    L  
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183

Query: 127 NNLNGPIPTTLGKLSK------LRFLRLNNNSLMGEIPR------------SLTNVNSLQ 168
           N+L   +    GK         L  L ++ N    +I              SL   + + 
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243

Query: 169 VLDLSNNKLTGDIPTNGSFSLFTPIS-----FANNQLNNPPPS 206
                 + +    P   +F+     S      ++  + +    
Sbjct: 244 GAGFGFHNIK--DPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 17/96 (17%)

Query: 294 NILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGEL------QFQTEVEMISMAVHRN 346
             +G+GGFG V+KGR + D S+VA+K L    ++G         +FQ EV ++S   H N
Sbjct: 25  KQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPN 84

Query: 347 LLRLRGFCMTP----TERLLVYPFMVNGSVASCLRG 378
           +++L G    P     E      F+  G +   L  
Sbjct: 85  IVKLYGLMHNPPRMVME------FVPCGDLYHRLLD 114

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 74.7 bits (184), Expect = 3e-15
 Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 7/126 (5%)

Query: 86  VSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRF 145
           +S L  L  L+ L L  N IS      L +L  L SL L  N +     T L +L+KL  
Sbjct: 105 LSSLKDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDT 160

Query: 146 LRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPP 205
           L L +N +  +I   L  +  LQ L LS N ++ D+           +   + +  N P 
Sbjct: 161 LSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS-DLRALAGLKNLDVLELFSQECLNKPI 217

Query: 206 SPPPPL 211
           +    L
Sbjct: 218 NHQSNL 223

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.8 bits (166), Expect = 7e-13
 Identities = 27/135 (20%), Positives = 57/135 (42%), Gaps = 9/135 (6%)

Query: 71  VTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLN 130
             + +L   +++        +L ++  +   +++I   V + +  L N+  L L  N L 
Sbjct: 26  TIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT 81

Query: 131 GPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLF 190
              P  L  L  L +L L+ N +  ++  SL ++  L+ L L +N ++ DI         
Sbjct: 82  DIKP--LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DINGLVHLPQL 136

Query: 191 TPISFANNQLNNPPP 205
             +   NN++ +   
Sbjct: 137 ESLYLGNNKITDITV 151

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 20/117 (17%), Positives = 43/117 (36%), Gaps = 7/117 (5%)

Query: 86  VSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRF 145
           +             L   +++  V      L ++  +    +++       +  L  +  
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTK 72

Query: 146 LRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN 202
           L LN N L  +I   L N+ +L  L L  NK+  D+ +         +S  +N +++
Sbjct: 73  LFLNGNKL-TDIK-PLANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSLEHNGISD 126

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 6/107 (5%)

Query: 72  TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNG 131
             + LGN  ++   ++ L +LT L  L L  N IS  VP  L  LT L +L L  N+++ 
Sbjct: 137 ESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192

Query: 132 PIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
                L  L  L  L L +   + +     +N+     +  ++  L 
Sbjct: 193 LRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.7 bits (184), Expect = 4e-15
 Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 9/143 (6%)

Query: 63  VTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSL 122
           VT    + +T +      ++   +  +  L NL  LEL  N I+      L NLT +  L
Sbjct: 35  VTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQIT--DLAPLKNLTKITEL 90

Query: 123 DLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP 182
           +L  N L       +  L  ++ L L +  +    P  L  +++LQVL L  N++T +I 
Sbjct: 91  ELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT-NIS 145

Query: 183 TNGSFSLFTPISFANNQLNNPPP 205
                +    +S  N Q+++  P
Sbjct: 146 PLAGLTNLQYLSIGNAQVSDLTP 168

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.0 bits (182), Expect = 7e-15
 Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 9/136 (6%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           +  ++  G +N++         L  +  L  +   ++    E +  L NL+ L+L  N +
Sbjct: 20  NAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQI 75

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSL 189
               P  L  L+K+  L L+ N L   +  ++  + S++ LDL++ ++T D+      S 
Sbjct: 76  TDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQIT-DVTPLAGLSN 130

Query: 190 FTPISFANNQLNNPPP 205
              +    NQ+ N  P
Sbjct: 131 LQVLYLDLNQITNISP 146

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 69.3 bits (170), Expect = 2e-13
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 9/138 (6%)

Query: 69  NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN 128
           +++  + L    ++   +S L  LTNLQYL + +  +S      L NL+ L +L    N 
Sbjct: 129 SNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNK 184

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFS 188
           ++   P  L  L  L  + L NN +    P  L N ++L ++ L+N  +T + P   + +
Sbjct: 185 ISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT-NQPVFYNNN 239

Query: 189 LFTPISFANNQLNNPPPS 206
           L  P            P+
Sbjct: 240 LVVPNVVKGPSGAPIAPA 257

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 7/120 (5%)

Query: 86  VSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRF 145
           +     L N   +    +N++        +L  + +L  +   +       +  L+ L  
Sbjct: 12  IFPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIG 67

Query: 146 LRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPP 205
           L L +N +  ++   L N+  +  L+LS N L  ++           +   + Q+ +  P
Sbjct: 68  LELKDNQIT-DLA-PLKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQITDVTP 124

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 8/121 (6%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           ++  + +GNA +S   ++ L  L+ L  L+   N IS      L +L NL+ + L  N +
Sbjct: 152 NLQYLSIGNAQVSD--LTPLANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQI 207

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT--GDIPTNGSF 187
           +   P  L   S L  + L N ++  +      N+    V+   +        I  NG++
Sbjct: 208 SDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTY 265

Query: 188 S 188
           +
Sbjct: 266 A 266

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 74.7 bits (184), Expect = 4e-15
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 5/125 (4%)

Query: 255 PEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSL 314
           PE +   + A   P           L+E  +  +      ++G+G FG+VY GR   G  
Sbjct: 2   PEMNLSLLSARSFPRKA--SQTSIFLQEWDIPFEQLEIGELIGKGRFGQVYHGRW-HGE- 57

Query: 315 VAVKRLKEERTQGGELQ-FQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVA 373
           VA++ +  ER    +L+ F+ EV       H N++   G CM+P    ++       ++ 
Sbjct: 58  VAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLY 117

Query: 374 SCLRG 378
           S +R 
Sbjct: 118 SVVRD 122

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 74.3 bits (183), Expect = 7e-15
 Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 5/145 (3%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
             T +DL N ++S         L +L  L L +N IS    +    L  L  L +  N+L
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSL 189
              IP  L   S L  LR+++N +        + + ++  +++  N L       G+F  
Sbjct: 115 VE-IPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 190 F--TPISFANNQLNNPPPSPPPPLQ 212
                +  +  +L   P   P  L 
Sbjct: 172 LKLNYLRISEAKLTGIPKDLPETLN 196

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 64.7 bits (158), Expect = 9e-12
 Identities = 27/121 (22%), Positives = 42/121 (34%), Gaps = 12/121 (9%)

Query: 89  LGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL 148
           L + + L  L L  N I       L  L  L  L L  N L+  +P  L  L  L+ + L
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYL 271

Query: 149 NNNSLMGEIP-------RSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFT---PISFANN 198
           + N++  ++                   + L NN +        +F   T    I F N 
Sbjct: 272 HTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

Query: 199 Q 199
           +
Sbjct: 331 K 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 8/121 (6%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNI-SGKVPEELGNLTNLVSLDLYLNN 128
           S+  + + +  +          L N+  +E+  N + +        +   L  L +    
Sbjct: 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK 183

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPR-SLTNVNSLQVLDLSNNKLTGDIPTNGSF 187
           L G IP  L     L  L L++N +   I    L   + L  L L +N++   I  NGS 
Sbjct: 184 LTG-IPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIE-NGSL 237

Query: 188 S 188
           S
Sbjct: 238 S 238

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 73.9 bits (182), Expect = 8e-15
 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 6/120 (5%)

Query: 264 AEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGS------LVAV 317
              +P               +V   N +    LG G FG+VY+G+++          VAV
Sbjct: 6   HHHNPNYCFAGKTSSISDLKEVPRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAV 65

Query: 318 KRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           K L E  ++  EL F  E  +IS   H+N++R  G  +    R ++   M  G + S LR
Sbjct: 66  KTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLR 125

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 73.5 bits (181), Expect = 9e-15
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 14/89 (15%)

Query: 294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 353
            ++GRG FG V K +      VA+K+++ E  +     F  E+  +S   H N+++L G 
Sbjct: 14  EVVGRGAFGVVCKAKW-RAKDVAIKQIESESERK---AFIVELRQLSRVNHPNIVKLYGA 69

Query: 354 CMTP----TERLLVYPFMVNGSVASCLRG 378
           C+ P     E      +   GS+ + L G
Sbjct: 70  CLNPVCLVME------YAEGGSLYNVLHG 92

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 294 NILGRGGFGKVYKGRLTDGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++GRG FG VY G L D        AVK L      G   QF TE  ++    H N+L 
Sbjct: 31  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 90

Query: 350 LRGFCMTPTE-RLLVYPFMVNGSVASCLR 377
           L G C+      L+V P+M +G + + +R
Sbjct: 91  LLGICLRSEGSPLVVLPYMKHGDLRNFIR 119

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 12/137 (8%)

Query: 80  NLSGQLVSQL-----GQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNG-PI 133
            L    ++ +       L +L++L+L  N++S       G L++L  L+L  N      +
Sbjct: 56  ILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGV 115

Query: 134 PTTLGKLSKLRFLRLNNNSLMGEIPR-SLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTP 192
            +    L+ L+ LR+ N     EI R     + SL  L++    L  +   + S      
Sbjct: 116 TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQ-SQSLKSIRD 173

Query: 193 I---SFANNQLNNPPPS 206
           I   +   ++       
Sbjct: 174 IHHLTLHLSESAFLLEI 190

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 21/137 (15%)

Query: 89  LGQLTNLQYLELYSNNIS--GKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFL 146
            G   +LQ L L  N++    K  E L  L NL SLD+  N  + P+P +     K+RFL
Sbjct: 357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFL 415

Query: 147 RLNNN---SLMGEIPRSLTNVN--------------SLQVLDLSNNKLTGDIPTNGSFSL 189
            L++     +   IP++L  ++               LQ L +S NKL   +P    F +
Sbjct: 416 NLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPDASLFPV 474

Query: 190 FTPISFANNQLNNPPPS 206
              +  + NQL + P  
Sbjct: 475 LLVMKISRNQLKSVPDG 491

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 26/126 (20%), Positives = 48/126 (38%), Gaps = 7/126 (5%)

Query: 63  VTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSL 122
           ++C++       D  + + +  + S L     ++ L+L  N I+     +L    NL  L
Sbjct: 2   LSCDASGVC---DGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVL 55

Query: 123 DLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP 182
            L  + +N         L  L  L L++N L          ++SL+ L+L  N     + 
Sbjct: 56  ILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLG 114

Query: 183 TNGSFS 188
               F 
Sbjct: 115 VTSLFP 120

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.8 bits (171), Expect = 5e-13
 Identities = 28/151 (18%), Positives = 54/151 (35%), Gaps = 11/151 (7%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           ++ R+ +    L   L +    L  ++ + + ++ +         +L +L  LDL  N +
Sbjct: 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346

Query: 130 NGPIPTT---LGKLSKLRFLRLNNNSL--MGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN 184
                      G    L+ L L+ N L  M +    L  + +L  LD+S N      P  
Sbjct: 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH---PMP 403

Query: 185 GSFSLFTPISF---ANNQLNNPPPSPPPPLQ 212
            S      + F   ++  +       P  L+
Sbjct: 404 DSCQWPEKMRFLNLSSTGIRVVKTCIPQTLE 434

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 69.0 bits (169), Expect = 9e-13
 Identities = 22/134 (16%), Positives = 54/134 (40%), Gaps = 3/134 (2%)

Query: 70  SVTRVDLGNANLSGQLVSQ-LGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN 128
           ++  + +GN     ++       LT+L  LE+ + ++     + L ++ ++  L L+L+ 
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFS 188
               +      LS +R+L L + +L       L        +     + +  + T+ SF+
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS--VLTDESFN 241

Query: 189 LFTPISFANNQLNN 202
               +     +L+ 
Sbjct: 242 ELLKLLRYILELSE 255

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 27/198 (13%), Positives = 67/198 (33%), Gaps = 13/198 (6%)

Query: 22  LRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANL 81
                    D L++++  L   +  L  +  + +                + +   + N 
Sbjct: 184 SAFLLEIFADILSSVRY-LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 82  SGQLVSQLGQLTNLQYLELYSNNISGKVPEELG--------NLTNLVSLDLYLNNLNGPI 133
             +L+  + +L+ +++ +   N +    P E              +  L +    L   +
Sbjct: 243 LLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302

Query: 134 PTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTP- 192
            T    L K++ + + N+ +         ++ SL+ LDLS N +  +   N +     P 
Sbjct: 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362

Query: 193 ---ISFANNQLNNPPPSP 207
              +  + N L +   + 
Sbjct: 363 LQTLVLSQNHLRSMQKTG 380

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 6e-09
 Identities = 22/125 (17%), Positives = 42/125 (33%), Gaps = 9/125 (7%)

Query: 56  NPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGN 115
           N       +C     +  ++L +  +    V +      L+ L++ +NN+          
Sbjct: 397 NTFHPMPDSCQWPEKMRFLNLSSTGIR---VVKTCIPQTLEVLDVSNNNLD-SFSL---F 449

Query: 116 LTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNN 175
           L  L  L +  N L      +L     L  ++++ N L          + SLQ + L  N
Sbjct: 450 LPRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

Query: 176 KLTGD 180
                
Sbjct: 508 PWDCS 512

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 16/144 (11%), Positives = 50/144 (34%), Gaps = 11/144 (7%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           S+  +++   +L       L  + ++ +L L+ +  +  +      L+++  L+L   NL
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSL----------MGEIPRSLTNVNSLQVLDLSNNKLTG 179
                + L        ++                + ++ R +  ++ ++  D + N L  
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD 268

Query: 180 -DIPTNGSFSLFTPISFANNQLNN 202
            +   +   S    +     +  +
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLH 292

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 27/109 (24%), Positives = 46/109 (42%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
               +DLG   +      +     +L+ LEL  N +S   P    NL NL +L L  N L
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
                     LS L  L ++ N ++  +     ++ +L+ L++ +N L 
Sbjct: 93  KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 72.1 bits (177), Expect = 8e-14
 Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 7/125 (5%)

Query: 92  LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN 151
           L NL+ L L SN +          L+NL  LD+  N +   +      L  L+ L + +N
Sbjct: 79  LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138

Query: 152 SLMGEIP-RSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFT---PISFANNQLNNPPPSP 207
            L+  I  R+ + +NSL+ L L    LT  IPT  + S       +   +  +N      
Sbjct: 139 DLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPT-EALSHLHGLIVLRLRHLNINAIRDYS 195

Query: 208 PPPLQ 212
              L 
Sbjct: 196 FKRLY 200

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 9/135 (6%)

Query: 72  TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEE-LGNLTNLVSLDLYLNNLN 130
             +++ +      +        NL  L +   N++  VP   + +L  L  L+L  N ++
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261

Query: 131 GPIPTTLGKLSKLRFLRLNNNSLMGEIPR-SLTNVNSLQVLDLSNNKLTGDIPTNGSFSL 189
               + L +L +L+ ++L    L   +   +   +N L+VL++S N+LT  +     F  
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRGLNYLRVLNVSGNQLT-TLE-ESVFHS 318

Query: 190 FTP---ISFANNQLN 201
                 +   +N L 
Sbjct: 319 VGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 92  LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN 151
           L +L+ L L   N++    E L +L  L+ L L   N+N     +  +L +L+ L +++ 
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 152 SLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN 184
             +  +  +     +L  L +++  LT  +P  
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYL 242

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.0 bits (169), Expect = 6e-13
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 4/121 (3%)

Query: 69  NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN 128
           NS+ ++ L   NL+      L  L  L  L L   NI+         L  L  L++    
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPR-SLTNVNSLQVLDLSNNKLTGDIPTNGSF 187
               +         L  L + + +L   +P  ++ ++  L+ L+LS N ++  I      
Sbjct: 212 YLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIE-GSML 268

Query: 188 S 188
            
Sbjct: 269 H 269

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 294 NILGRGGFGKVYKGRLTD-----GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLL 348
             LG G FGKV            G +VAVK LK +        ++ E++++    H +++
Sbjct: 37  RDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHII 96

Query: 349 RLRGFCMTPTER--LLVYPFMVNGSVASCLR 377
           + +G C         LV  ++  GS+   L 
Sbjct: 97  KYKGCCEDAGAASLQLVMEYVPLGSLRDYLP 127

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 10/148 (6%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
               +DL N  ++         L NL  L L +N IS   P     L  L  L L  N L
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPR-SLTNVNSLQVLDLSNNKLTGDIPTNGSF- 187
              +P  +     L+ LR++ N +  ++ +     +N + V++L  N L      NG+F 
Sbjct: 113 KE-LPEKM--PKTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 188 ---SLFTPISFANNQLNNPPPSPPPPLQ 212
               L + I  A+  +   P   PP L 
Sbjct: 169 GMKKL-SYIRIADTNITTIPQGLPPSLT 195

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 71.2 bits (175), Expect = 6e-14
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 90  GQLTNLQYLELYSNNISGKVPEE-LGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL 148
           G   +L  L L  N I+ KV    L  L NL  L L  N+++     +L     LR L L
Sbjct: 189 GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247

Query: 149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
           NNN L+ ++P  L +   +QV+ L NN ++
Sbjct: 248 NNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 9/107 (8%)

Query: 89  LGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL 148
           L  L NL  L L  N+IS      L N  +L  L L  N L   +P  L     ++ + L
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYL 270

Query: 149 NNNSLMGEIPRS-------LTNVNSLQVLDLSNNKLTGDIPTNGSFS 188
           +NN++   I  +        T   S   + L +N +        +F 
Sbjct: 271 HNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR 316

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.0 bits (159), Expect = 7e-12
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 92  LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNG------PIPTTLGKLSKLRF 145
             +L+ L L +N +  KVP  L +   +  + L+ NN++         P    K +    
Sbjct: 239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297

Query: 146 LRLNNNSL-MGEIPRSL-TNVNSLQVLDLSNNK 176
           + L +N +   EI  S    V     + L N K
Sbjct: 298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 31/143 (21%), Positives = 57/143 (39%), Gaps = 14/143 (9%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNI-SGKVPEE-LGNLTNLVSLDLYLN 127
           ++  + +    ++    S    L  +  +EL +N + S  +       +  L  + +   
Sbjct: 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 128 NLNGPIPTTLGKLSKLRFLRLNNNSLMGEIP-RSLTNVNSLQVLDLSNNKLTGDIPTNGS 186
           N+   IP  L     L  L L+ N +  ++   SL  +N+L  L LS N ++  +  NGS
Sbjct: 182 NITT-IPQGL--PPSLTELHLDGNKI-TKVDAASLKGLNNLAKLGLSFNSIS-AVD-NGS 235

Query: 187 F----SLFTPISFANNQLNNPPP 205
                 L   +   NN+L   P 
Sbjct: 236 LANTPHLRE-LHLNNNKLVKVPG 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.0 bits (177), Expect = 3e-14
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 1/88 (1%)

Query: 92  LTNLQYLELYSNNISGKVPEE-LGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNN 150
           L++L+ L++  N+       +    L NL  LDL    L    PT    LS L+ L +++
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208

Query: 151 NSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
           N+           +NSLQVLD S N + 
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.2 bits (175), Expect = 5e-14
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 7/121 (5%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           S T +   +  L+   V   G  ++   LEL SN +          LT L  L L  N L
Sbjct: 8   SGTEIRCNSKGLTS--VPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 130 N--GPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSF 187
           +  G    +    + L++L L+ N +   +  +   +  L+ LD  ++ L   +     F
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVF 122

Query: 188 S 188
            
Sbjct: 123 L 123

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.2 bits (175), Expect = 6e-14
 Identities = 29/141 (20%), Positives = 54/141 (38%), Gaps = 6/141 (4%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEEL-GNLTNLVSLDLYLNN 128
           S+  +DL    +   + S    L  L++L+   +N+       +  +L NL+ LD+   +
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPR-SLTNVNSLQVLDLSNNKLTGDIPTNGSF 187
                      LS L  L++  NS          T + +L  LDLS  +L   +      
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFN 196

Query: 188 SLF--TPISFANNQLNNPPPS 206
           SL     ++ ++N   +    
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTF 217

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 72.6 bits (178), Expect = 3e-14
 Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 15/152 (9%)

Query: 70  SVTRVDLGNANLSGQLVSQ--LGQLTNLQYLELYSNNISGKVPEE-LGNLTNLVSLDLYL 126
               +DL + NLS +L ++    +LTNL  L L  N+++  +  E    + NL  LDL  
Sbjct: 40  YTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97

Query: 127 NNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPR-SLTNVNSLQVLDLSNNKLTGDIPTNG 185
           N+L+         L  L  L L NN +   + R +  ++  LQ L LS N+++   P   
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQIS-RFP-VE 154

Query: 186 SFSLFTPISF------ANNQLNNPPPSPPPPL 211
                  +        ++N+L   P +    L
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKL 186

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 65.2 bits (159), Expect = 7e-12
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 10/119 (8%)

Query: 91  QLTNLQYLELYSNNISGKVPEE-LGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN 149
            + NL+YL+L SN++   + E    +L  L  L LY N++          +++L+ L L+
Sbjct: 86  PVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144

Query: 150 NNSLMGEIP----RSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQL-NNP 203
            N +    P    +    +  L +LDLS+NKL   +P                 L NNP
Sbjct: 145 QNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK-KLP-LTDLQKLPAWVKNGLYLHNNP 200

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 8/118 (6%)

Query: 93  TNLQYLELYSNNISGKVPEE-LGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN 151
           +    L+L  NN+S    E     LTNL SL L  N+LN         +  LR+L L++N
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 152 SLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSF----SLFTPISFANNQLNNPPP 205
            L        +++ +L+VL L NN +   +    +F     L   +  + NQ++  P 
Sbjct: 99  HLHTLDEFLFSDLQALEVLLLYNNHIV-VVD-RNAFEDMAQL-QKLYLSQNQISRFPV 153

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.4 bits (110), Expect = 9e-06
 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 92  LTNLQYLELYSNNISGKVPEE----LGNLTNLVSLDLYLNNLNGPIPTTLGKLSKL--RF 145
           +  LQ L L  N IS + P E       L  L+ LDL  N L     T L KL       
Sbjct: 135 MAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG 193

Query: 146 LRLNNNSL 153
           L L+NN L
Sbjct: 194 LYLHNNPL 201

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 72.5 bits (178), Expect = 3e-14
 Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 7/90 (7%)

Query: 294 NILGRGGFGKVYKGRLTDGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++GRG FG VY G L D        AVK L      G   QF TE  ++    H N+L 
Sbjct: 95  EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 154

Query: 350 LRGFCMTPTE--RLLVYPFMVNGSVASCLR 377
           L G C   +E   L+V P+M +G + + +R
Sbjct: 155 LLGIC-LRSEGSPLVVLPYMKHGDLRNFIR 183

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 73.4 bits (180), Expect = 3e-14
 Identities = 38/148 (25%), Positives = 61/148 (41%), Gaps = 9/148 (6%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNIS--GKVPEELGNLTNLVSLDLYLN 127
               +D  N  L+  +    G LT L+ L L  N +    K+ E    + +L  LD+  N
Sbjct: 325 PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384

Query: 128 NLN-GPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGS 186
           +++             L  L +++N L   I R L     ++VLDL +NK+   IP    
Sbjct: 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIK-SIP-KQV 440

Query: 187 FSL--FTPISFANNQLNNPPPSPPPPLQ 212
             L     ++ A+NQL + P      L 
Sbjct: 441 VKLEALQELNVASNQLKSVPDGIFDRLT 468

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 68.4 bits (167), Expect = 1e-12
 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 7/124 (5%)

Query: 93  TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNS 152
                L +  N IS     ++ +L+ L  L +  N +     +      +L +L L++N 
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 153 LMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFT---PISFANNQLNNPPPSPPP 209
           L+        N   L+ LDLS N     +P    F   +    +  +   L      P  
Sbjct: 81  LVKISCHPTVN---LKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 210 PLQP 213
            L  
Sbjct: 137 HLNI 140

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 65.7 bits (160), Expect = 9e-12
 Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 11/135 (8%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
             T +++    +S    S +  L+ L+ L +  N I             L  LDL  N L
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRS--LTNVNSLQVLDLSNNKLTGDIPTNGSF 187
              I         L+ L L+ N+    +P      N++ L+ L LS   L        S 
Sbjct: 82  VK-IS--CHPTVNLKHLDLSFNAF-DALPICKEFGNMSQLKFLGLSTTHL-----EKSSV 132

Query: 188 SLFTPISFANNQLNN 202
                ++ +   L  
Sbjct: 133 LPIAHLNISKVLLVL 147

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 64.1 bits (156), Expect = 3e-11
 Identities = 30/156 (19%), Positives = 55/156 (35%), Gaps = 6/156 (3%)

Query: 61  FHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLV 120
           F  +  S  +++   + +              +N+       +            ++  +
Sbjct: 268 FDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFL 327

Query: 121 SLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSL--MGEIPRSLTNVNSLQVLDLSNNKLT 178
            LD   N L   +    G L++L  L L  N L  + +I    T + SLQ LD+S N ++
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387

Query: 179 GDIPTNGSFSLFTPISF---ANNQLNNPPPSPPPPL 211
            D    G  S    +     ++N L +      PP 
Sbjct: 388 YDEK-KGDCSWTKSLLSLNMSSNILTDTIFRCLPPR 422

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.0 bits (153), Expect = 7e-11
 Identities = 27/117 (23%), Positives = 41/117 (35%), Gaps = 5/117 (4%)

Query: 91  QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNG-PIPTTLGKLSKLRFLRLN 149
               L+YL+L  N +  K+        NL  LDL  N  +  PI    G +S+L+FL L+
Sbjct: 67  FNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123

Query: 150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPS 206
              L       + ++N  +VL +                 F   S       N    
Sbjct: 124 TTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP-EGLQDFNTESLHIVFPTNKEFH 179

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.5 bits (144), Expect = 8e-10
 Identities = 27/198 (13%), Positives = 55/198 (27%), Gaps = 5/198 (2%)

Query: 12  LVSILFFDLLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENSV 71
           +  +L  +      S       N   +NL   N          +    W   T     S+
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW--HTTVWYFSI 254

Query: 72  TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNG 131
           + V L               L  L   ++ S+             +N+   +  ++    
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 132 PIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFT 191
                  K+S    L  +NN L   +  +  ++  L+ L L  N+L          +   
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK 374

Query: 192 P---ISFANNQLNNPPPS 206
               +  + N ++     
Sbjct: 375 SLQQLDISQNSVSYDEKK 392

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 6/108 (5%)

Query: 70  SVTRVDLGNANLSGQL-VSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN 128
           S+ ++D+   ++S            +L  L + SN ++  +   L     +  LDL+ N 
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNK 432

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPR-SLTNVNSLQVLDLSNN 175
           +   IP  + KL  L+ L + +N L   +P      + SLQ + L  N
Sbjct: 433 IKS-IPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 64  TCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLD 123
            C+   S+  +++ +  L+  +   L     ++ L+L+SN I   +P+++  L  L  L+
Sbjct: 394 DCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELN 450

Query: 124 LYLNNLNGPIPTTLGKLSKLRFLRLNNNSL 153
           +  N L         +L+ L+ + L+ N  
Sbjct: 451 VASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 12/106 (11%), Positives = 34/106 (32%), Gaps = 2/106 (1%)

Query: 89  LGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL 148
            G ++ L++L L + ++       + +L     L +               L       L
Sbjct: 111 FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED--PEGLQDFNTESL 168

Query: 149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPIS 194
           +      +    + +V+   V +L  + +   +  N      + ++
Sbjct: 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA 214

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 17/118 (14%)

Query: 266 EDP-EVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSL-----VAVKR 319
           E P +  L  LK    ++++V          LG G FG VYKG            VA+K 
Sbjct: 2   EAPNQALLRILKETEFKKIKV----------LGSGAFGTVYKGLWIPEGEKVKIPVAIKE 51

Query: 320 LKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           L+E  +     +   E  +++   + ++ RL G C+T T   L+   M  G +   +R
Sbjct: 52  LREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVR 108

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.2 bits (175), Expect = 4e-14
 Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 15/139 (10%)

Query: 62  HVTCNSEN----------SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPE 111
             +C  +           +  R+ L    +S    +      NL  L L+SN ++     
Sbjct: 15  TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 112 ELGNLTNLVSLDLYLNNLNGPIP-TTLGKLSKLRFLRLNNNSLMGEIP-RSLTNVNSLQV 169
               L  L  LDL  N     +   T   L +L  L L+   L  E+       + +LQ 
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQY 133

Query: 170 LDLSNNKLTGDIPTNGSFS 188
           L L +N L   +P + +F 
Sbjct: 134 LYLQDNALQ-ALP-DDTFR 150

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 92  LTNLQYLELYSNNISGKVPEE-LGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNN 150
           L  LQYL L  N +   +P++   +L NL  L L+ N ++         L  L  L L+ 
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186

Query: 151 NSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
           N +    P +  ++  L  L L  N L+
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 62.3 bits (152), Expect = 4e-11
 Identities = 26/84 (30%), Positives = 38/84 (45%)

Query: 92  LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN 151
           L NL +L L+ N IS         L +L  L L+ N +    P     L +L  L L  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 152 SLMGEIPRSLTNVNSLQVLDLSNN 175
           +L      +L  + +LQ L L++N
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.2 bits (118), Expect = 9e-07
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 92  LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN 151
           L +L  L L+ N ++   P    +L  L++L L+ NNL+      L  L  L++LRLN+N
Sbjct: 176 LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

Query: 152 SL 153
             
Sbjct: 236 PW 237

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.0 bits (179), Expect = 5e-14
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 6/143 (4%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           +V  +D  + +++   V +      L  L+L  NN++      L N   LV +DL  N L
Sbjct: 212 AVEELDASHNSIN---VVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNEL 266

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSL 189
              +     K+ +L  L ++NN L+  +      + +L+VLDLS+N L         F  
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 325

Query: 190 FTPISFANNQLNNPPPSPPPPLQ 212
              +   +N +     S    L+
Sbjct: 326 LENLYLDHNSIVTLKLSTHHTLK 348

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.0 bits (166), Expect = 2e-12
 Identities = 16/87 (18%), Positives = 31/87 (35%)

Query: 92  LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN 151
           L N + +   ++ +       L +   +  L+L    +             ++ L +  N
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

Query: 152 SLMGEIPRSLTNVNSLQVLDLSNNKLT 178
           ++    P    NV  L VL L  N L+
Sbjct: 110 AIRYLPPHVFQNVPLLTVLVLERNDLS 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 67.6 bits (165), Expect = 2e-12
 Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 5/109 (4%)

Query: 72  TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNG 131
             VDL    L   +     ++  L+ L + +N +   +      +  L  LDL  N+L  
Sbjct: 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH 315

Query: 132 PIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGD 180
            +     +  +L  L L++NS++  +   L+  ++L+ L LS+N    +
Sbjct: 316 -VERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCN 360

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.2 bits (156), Expect = 3e-11
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 10/116 (8%)

Query: 89  LGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL 148
                 L  L + +NN+     +     T+L +L L  N L   +   L  +  L    +
Sbjct: 143 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANV 199

Query: 149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPP 204
           + N L      +L    +++ LD S+N +   +    +  L T +   +N L +  
Sbjct: 200 SYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVNVEL-TILKLQHNNLTDTA 248

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 72.5 bits (178), Expect = 5e-14
 Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 3/105 (2%)

Query: 75  DLGNANLSGQLVSQ-LGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPI 133
           DLG       +       L NL+YL L   NI   +P  L  L  L  L++  N+     
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIR 234

Query: 134 PTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
           P +   LS L+ L + N+ +      +   + SL  L+L++N L+
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 66.3 bits (162), Expect = 5e-12
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 11/127 (8%)

Query: 65  CNSENSVTRVDLGNANLSG--QLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSL 122
           C+  N  ++V      LS   Q +      +N +YL L  NNI     +   +L +L  L
Sbjct: 50  CSCSNQFSKVVCTRRGLSEVPQGIP-----SNTRYLNLMENNIQMIQADTFRHLHHLEVL 104

Query: 123 DLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPR-SLTNVNSLQVLDLSNNKLTGDI 181
            L  N++          L+ L  L L +N L   IP  +   ++ L+ L L NN +   I
Sbjct: 105 QLGRNSIRQIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNPIE-SI 162

Query: 182 PTNGSFS 188
           P + +F+
Sbjct: 163 P-SYAFN 168

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 2/101 (1%)

Query: 75  DLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIP 134
           +LG  N+    +  L  L  L+ LE+  N+     P     L++L  L +  + ++    
Sbjct: 202 NLGMCNIKD--MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259

Query: 135 TTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNN 175
                L+ L  L L +N+L        T +  L  L L +N
Sbjct: 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 3/110 (2%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEE-LGNLTNLVSLDLYLNN 128
            +  + L N  +         ++ +L  L+L        + E     L NL  L+L + N
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN 207

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
           +   +P  L  L  L  L ++ N      P S   ++SL+ L + N++++
Sbjct: 208 IKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 72.0 bits (177), Expect = 5e-14
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 5/124 (4%)

Query: 90  GQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN 149
                L  L+L  NN++      L N   LV +DL  N L   +     K+ +L  L ++
Sbjct: 223 PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280

Query: 150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN-GSFSLFTPISFANNQLNNPPPSPP 208
           NN L+  +      + +L+VLDLS+N L   +  N   F     +   +N +     S  
Sbjct: 281 NNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTH 338

Query: 209 PPLQ 212
             L+
Sbjct: 339 HTLK 342

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 16/87 (18%), Positives = 31/87 (35%)

Query: 92  LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN 151
           L N + +   ++ +       L +   +  L+L    +             ++ L +  N
Sbjct: 44  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 103

Query: 152 SLMGEIPRSLTNVNSLQVLDLSNNKLT 178
           ++    P    NV  L VL L  N L+
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLS 130

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 5/109 (4%)

Query: 72  TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNG 131
             VDL    L   +     ++  L+ L + +N +   +      +  L  LDL  N+L  
Sbjct: 251 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH 309

Query: 132 PIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGD 180
            +     +  +L  L L++NS++  +  S    ++L+ L LS+N    +
Sbjct: 310 -VERNQPQFDRLENLYLDHNSIV-TLKLS--THHTLKNLTLSHNDWDCN 354

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 10/116 (8%)

Query: 89  LGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL 148
                 L  L + +NN+     +     T+L +L L  N L   +   L  +  L    +
Sbjct: 137 FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LSLIPSLFHANV 193

Query: 149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPP 204
           + N L      +L    +++ LD S+N +   +    +  L T +   +N L +  
Sbjct: 194 SYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVNVEL-TILKLQHNNLTDTA 242

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 71.2 bits (175), Expect = 5e-14
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 294 NILGRGGFGKVYKGRLT-----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLL 348
             LG G FGKV   R        G  VAVK LK E         + E+E++    H N++
Sbjct: 27  RDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIV 86

Query: 349 RLRGFCMTPTER--LLVYPFMVNGSVASCLR 377
           + +G C         L+  F+ +GS+   L 
Sbjct: 87  KYKGICTEDGGNGIKLIMEFLPSGSLKEYLP 117

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 70.0 bits (172), Expect = 9e-14
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQ-FQTEVEMISMAVHRNLLRLRG 352
             L     G+++KGR   G+ + VK LK       + + F  E   + +  H N+L + G
Sbjct: 16  TKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLG 74

Query: 353 FCMTPTERLL--VYPFMVNGSVASCLR 377
            C +P       +  +M  GS+ + L 
Sbjct: 75  ACQSPPAPHPTLITHWMPYGSLYNVLH 101

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 6/90 (6%)

Query: 294 NILGRGGFGKVYKGRLTDGS------LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
             LG G FG+VY+G+++          VAVK L E  ++  EL F  E  +IS   H+N+
Sbjct: 77  RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNI 136

Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +R  G  +    R ++   M  G + S LR
Sbjct: 137 VRCIGVSLQSLPRFILLELMAGGDLKSFLR 166

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 16/132 (12%)

Query: 252 KRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTD 311
           +  P   +  +P   +P+          L  L+   +N      +G G FG+V++ R   
Sbjct: 21  RLHPNPMYQRMPLLLNPK----------LLSLEYPRNNIEYVRDIGEGAFGRVFQARAPG 70

Query: 312 G------SLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP 365
                  ++VAVK LKEE +   +  FQ E  +++   + N+++L G C       L++ 
Sbjct: 71  LLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKPMCLLFE 130

Query: 366 FMVNGSVASCLR 377
           +M  G +   LR
Sbjct: 131 YMAYGDLNEFLR 142

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 27/162 (16%), Positives = 54/162 (33%), Gaps = 16/162 (9%)

Query: 58  CTWFHVTCNSEN----------SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISG 107
                  C   N          S   +DL    L             LQ L+L    I  
Sbjct: 7   VPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ- 65

Query: 108 KVPEEL-GNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNS 166
            + +    +L++L +L L  N +          LS L+ L     +L       + ++ +
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 167 LQVLDLSNNKLTGDIPTNGSFS---LFTPISFANNQLNNPPP 205
           L+ L++++N +         FS       +  ++N++ +   
Sbjct: 126 LKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.4 bits (142), Expect = 7e-10
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 6/94 (6%)

Query: 90  GQLTNLQYLELYSNNI-SGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRF--- 145
           G L  L+ L +  N I S K+PE   NLTNL  LDL  N +     T L  L ++     
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 146 -LRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
            L L+ N +   I         L+ L L  N+L 
Sbjct: 181 SLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK 213

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 294 NILGRGGFGKVYKGRLTDGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++G+G FG VY G   D +      A+K L           F  E  ++    H N+L 
Sbjct: 27  RVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLA 86

Query: 350 LRGFCMTPTE--RLLVYPFMVNGSVASCLR 377
           L G    P E    ++ P+M +G +   +R
Sbjct: 87  LIGIM-LPPEGLPHVLLPYMCHGDLLQFIR 115

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 10/94 (10%)

Query: 294 NILGRGGFGKVYKGRLTDGS----LVAVKRLKEERTQGGELQ-FQTEVEMISMAVHRNLL 348
            ILG G FG V +G L         VAVK +K + +   E++ F +E   +    H N++
Sbjct: 40  KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVI 99

Query: 349 RLRGFC-----MTPTERLLVYPFMVNGSVASCLR 377
           RL G C         + +++ PFM  G + + L 
Sbjct: 100 RLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLL 133

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 294 NILGRGGFGKVYKGRLTDGS------LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
             LG+G FG VY+G             VA+K + E  +    ++F  E  ++      ++
Sbjct: 31  RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHV 90

Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +RL G        L++   M  G + S LR
Sbjct: 91  VRLLGVVSQGQPTLVIMELMTRGDLKSYLR 120

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.9 bits (173), Expect = 2e-13
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 12/122 (9%)

Query: 61  FHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLV 120
             V       V  + L + +L+  ++  L QL  + +L+L  N +   +P  L  L  L 
Sbjct: 433 NSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLE 489

Query: 121 SLDL---YLNNLNGPIPTTLGKLSKLRFLRLNNNSLMG-EIPRSLTNVNSLQVLDLSNNK 176
            L      L N++G     +  L +L+ L L NN L      + L +   L +L+L  N 
Sbjct: 490 VLQASDNALENVDG-----VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544

Query: 177 LT 178
           L 
Sbjct: 545 LC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.4 bits (130), Expect = 4e-08
 Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 2/130 (1%)

Query: 75  DLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIP 134
            L     + Q  S L  +  ++   L        +   +  +       L+L + +  + 
Sbjct: 397 PLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL 456

Query: 135 TTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPIS 194
             L +L  +  L L++N L   +P +L  +  L+VL  S+N L  ++    +      + 
Sbjct: 457 CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDGVANLPRLQELL 514

Query: 195 FANNQLNNPP 204
             NN+L    
Sbjct: 515 LCNNRLQQSA 524

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 2e-13
 Identities = 32/158 (20%), Positives = 53/158 (33%), Gaps = 15/158 (9%)

Query: 69  NSVTRVDLGNANLSG--QLVSQLGQL--TNLQYLELYSNNISGKVPEELGNLTNLVSLDL 124
             +  ++L N + +     +++L Q     L+ L +   +      E++     L +LDL
Sbjct: 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL 180

Query: 125 YLNNLNGPIP----TTLGKLSKLRFLRLNNN---SLMGEIPRSLTNVNSLQVLDLSNNKL 177
             N   G           K   L+ L L N    +  G           LQ LDLS+N L
Sbjct: 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240

Query: 178 TGDIPTNGSFSLFTPISF---ANNQLNNPPPSPPPPLQ 212
                   S    + ++    +   L   P   P  L 
Sbjct: 241 RD-AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLS 277

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.5 bits (162), Expect = 3e-12
 Identities = 30/119 (25%), Positives = 43/119 (36%), Gaps = 8/119 (6%)

Query: 89  LGQLTNLQYLELYSNN---ISGKVPEELGNLTNLVSLDLYLNNLNG-PIPTTLGKLSKLR 144
             +   LQ L L +      SG           L  LDL  N+L       +    S+L 
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256

Query: 145 FLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNP 203
            L L+   L  ++P+ L     L VLDLS N+L    P+         +S   N   + 
Sbjct: 257 SLNLSFTGL-KQVPKGLPA--KLSVLDLSYNRLDR-NPSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 30/169 (17%), Positives = 51/169 (30%), Gaps = 13/169 (7%)

Query: 57  PCTWFHVTCNSENSVTRVDLGNAN--LSGQLVSQLGQLTNLQYLELYSNNISGKVP-EEL 113
           PC     +C+   S  + D  +A   L    V   G   +L+YL    +  +      ++
Sbjct: 5   PCELDEESCSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDI 64

Query: 114 GNLTNLVSLDLYLNNLNGPIPTTLGKL---SKLRFLRLNNNSLMGEIPRSLTNV--NSLQ 168
               +L  L +    +   I     ++   S L+ L L N  + G  P  L       L 
Sbjct: 65  IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLN 124

Query: 169 VLDLSNNKLTGDIPTNGSFSLFTP-----ISFANNQLNNPPPSPPPPLQ 212
           +L+L N               +       +S A     N          
Sbjct: 125 ILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 13/126 (10%)

Query: 256 EDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSL- 314
           + H      + +P+  +         +++        ++++G G FG+V K R+    L 
Sbjct: 2   KKHHHHHHGKNNPDPTI--YPVLDWNDIKF-------QDVIGEGNFGQVLKARIKKDGLR 52

Query: 315 --VAVKRLKEERTQGGELQFQTEVE-MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGS 371
              A+KR+KE  ++     F  E+E +  +  H N++ L G C       L   +  +G+
Sbjct: 53  MDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGN 112

Query: 372 VASCLR 377
           +   LR
Sbjct: 113 LLDFLR 118

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 68.9 bits (169), Expect = 3e-13
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 11/95 (11%)

Query: 294 NILGRGGFGKVYKGRLTDGS----LVAVKRLKEERTQGGELQ-FQTEVEMISMAVHRNLL 348
            +LG+G FG V + +L         VAVK LK +     +++ F  E   +    H ++ 
Sbjct: 29  RMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVA 88

Query: 349 RLRGFC------MTPTERLLVYPFMVNGSVASCLR 377
           +L G              +++ PFM +G + + L 
Sbjct: 89  KLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLL 123

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.8 bits (171), Expect = 4e-13
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 92  LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN 151
           L+NL+YL L   N+  ++P  L  L  L  LDL  N+L+   P +   L  L+ L +  +
Sbjct: 184 LSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241

Query: 152 SLMGEIPRSLTNVNSLQVLDLSNNKLT 178
            +      +  N+ SL  ++L++N LT
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 2/122 (1%)

Query: 92  LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN 151
           L NL  LEL+ N ++         L+ L  L L  N +         ++  LR L L   
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170

Query: 152 SLMGEIPR-SLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPPPP 210
             +  I   +   +++L+ L+L+   L  +IP          +  + N L+   P     
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSAIRPGSFQG 229

Query: 211 LQ 212
           L 
Sbjct: 230 LM 231

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 66.3 bits (162), Expect = 5e-12
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 2/96 (2%)

Query: 93  TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNS 152
           TN + L L+ N I         +L +L  L L  N++          L+ L  L L +N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 153 LMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFS 188
           L      +   ++ L+ L L NN +   IP+  +F+
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIE-SIPS-YAFN 157

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 35/124 (28%), Positives = 52/124 (41%), Gaps = 8/124 (6%)

Query: 92  LTNLQYLELYSNNISGKVPEE-LGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNN 150
           + +L+ L+L        + E     L+NL  L+L + NL   IP  L  L KL  L L+ 
Sbjct: 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSG 216

Query: 151 NSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTP---ISFANNQLNNPPPSP 207
           N L    P S   +  LQ L +  +++   I    +F        I+ A+N L   P   
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIE-RNAFDNLQSLVEINLAHNNLTLLPHDL 274

Query: 208 PPPL 211
             PL
Sbjct: 275 FTPL 278

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 2/106 (1%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           ++  ++L   NL    +  L  L  L  L+L  N++S   P     L +L  L +  + +
Sbjct: 186 NLRYLNLAMCNLRE--IPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNN 175
                     L  L  + L +N+L        T ++ L+ + L +N
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 17/62 (27%), Positives = 26/62 (41%)

Query: 92  LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN 151
           L +LQ L +  + I         NL +LV ++L  NNL          L  L  + L++N
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

Query: 152 SL 153
             
Sbjct: 290 PW 291

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.9 bits (171), Expect = 4e-13
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 18/141 (12%)

Query: 68  ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLN 127
            N    +++G + L+  L   L    ++  L +  NN++  +P     L     L++  N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPELRT---LEVSGN 91

Query: 128 NLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSF 187
            L   +P     L +L         L    P   +    L  L +  N+LT  +P     
Sbjct: 92  QLTS-LPVLPPGLLELSIFSNPLTHL----PALPSG---LCKLWIFGNQLT-SLPV--LP 140

Query: 188 SLFTPISFANNQLNNPPPSPP 208
                +S ++NQL + P  P 
Sbjct: 141 PGLQELSVSDNQLASLPALPS 161

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 68.4 bits (167), Expect = 1e-12
 Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 15/125 (12%)

Query: 84  QLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKL 143
            L S       L+ LE+  N ++  +P     L  L      L +L       L   S L
Sbjct: 72  NLTSLPALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL-----PAL--PSGL 123

Query: 144 RFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNP 203
             L +  N L   +P        LQ L +S+N+L   +P     S    +   NNQL + 
Sbjct: 124 CKLWIFGNQL-TSLPVLPPG---LQELSVSDNQLA-SLP--ALPSELCKLWAYNNQLTSL 176

Query: 204 PPSPP 208
           P  P 
Sbjct: 177 PMLPS 181

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 65.3 bits (159), Expect = 1e-11
 Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 22/136 (16%)

Query: 92  LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKL----------- 140
            + LQ L +  N ++  +P     L  L + +  L +L   +P+ L +L           
Sbjct: 180 PSGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLP-ALPSGLKELIVSGNRLTSLP 237

Query: 141 ---SKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN-GSFSLFTPISFA 196
              S+L+ L ++ N L   +P   +    L  L +  N+LT  +P +    S  T ++  
Sbjct: 238 VLPSELKELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292

Query: 197 NNQLNNPPPSPPPPLQ 212
            N L+         + 
Sbjct: 293 GNPLSERTLQALREIT 308

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.8 bits (155), Expect = 4e-11
 Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 15/125 (12%)

Query: 84  QLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKL 143
           QL S     + L  L  Y+N ++  +P     L     L +  N L   +PT   +L K 
Sbjct: 152 QLASLPALPSELCKLWAYNNQLT-SLPMLPSGLQ---ELSVSDNQLAS-LPTLPSELYK- 205

Query: 144 RFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNP 203
             L   NN L   +P   +    L+ L +S N+LT  +P     S    +  + N+L + 
Sbjct: 206 --LWAYNNRLT-SLPALPSG---LKELIVSGNRLT-SLPV--LPSELKELMVSGNRLTSL 256

Query: 204 PPSPP 208
           P  P 
Sbjct: 257 PMLPS 261

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 9/115 (7%)

Query: 92  LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN 151
            + L+ L +  N ++  +P     L    SL +Y N L   +P +L  LS    + L  N
Sbjct: 240 PSELKELMVSGNRLT-SLPMLPSGLL---SLSVYRNQLTR-LPESLIHLSSETTVNLEGN 294

Query: 152 SLMGEIPRSLTNVNSLQVLDLSNNKLT-GDIPTNGSFSLFTPISFANNQLNNPPP 205
            L  E       +  +      +  +   D+    +      +  A      P  
Sbjct: 295 PLS-ERTLQ--ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 68.5 bits (168), Expect = 5e-13
 Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 17/118 (14%)

Query: 266 EDP-EVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGS-----LVAVKR 319
           E P +  L  LK    ++++V          LG G FG VYKG            VA+K 
Sbjct: 2   EAPNQALLRILKETEFKKIKV----------LGSGAFGTVYKGLWIPEGEKVKIPVAIKE 51

Query: 320 LKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           L+E  +     +   E  +++   + ++ RL G C+T T   L+   M  G +   +R
Sbjct: 52  LREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQLITQLMPFGCLLDYVR 108

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 69.2 bits (169), Expect = 7e-13
 Identities = 37/194 (19%), Positives = 59/194 (30%), Gaps = 17/194 (8%)

Query: 188 SLFTPISFANNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAAPAIAL 247
            L      ++    +   +P  P  P+          T    G              I  
Sbjct: 249 CLKEACPNSSASNASGAAAPTLPAHPSTLTHPQRRIDTLNSDG-------YTPEPARITS 301

Query: 248 AYWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKG 307
               +  P D         DPE    +LK   L   +   +       LG G FG V +G
Sbjct: 302 PDKPRPMPMDTSVFESPFSDPE----ELKDKKLFLKR--DNLLIADIELGCGNFGSVRQG 355

Query: 308 RLTDGS---LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY 364
                     VA+K LK+   +    +   E +++    +  ++RL G C      +LV 
Sbjct: 356 VYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEA-LMLVM 414

Query: 365 PFMVNGSVASCLRG 378
                G +   L G
Sbjct: 415 EMAGGGPLHKFLVG 428

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 68.1 bits (167), Expect = 7e-13
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 294 NILGRGGFGKVYKGRLT-----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLL 348
           + LG+G FG V   R        G+LVAVK+L+       +  FQ E++++       ++
Sbjct: 29  SQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPD-QQRDFQREIQILKALHSDFIV 87

Query: 349 RLRGFCMTPTER--LLVYPFMVNGSVASCLR 377
           + RG    P  +   LV  ++ +G +   L+
Sbjct: 88  KYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQ 118

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 68.2 bits (167), Expect = 8e-13
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 294 NILGRGGFGKVYKGRLT-----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLL 348
             LG+G FG V   R        G +VAVK+L+   T+     F+ E+E++    H N++
Sbjct: 47  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS-TEEHLRDFEREIEILKSLQHDNIV 105

Query: 349 RLRGFCMTPTER--LLVYPFMVNGSVASCLR 377
           + +G C +   R   L+  ++  GS+   L+
Sbjct: 106 KYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 136

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 67.7 bits (166), Expect = 8e-13
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 293 RNILGRGGFGKVYKGRLTDGS---LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
              LG G FG V +G          VA+K LK+   +    +   E +++    +  ++R
Sbjct: 15  DIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVR 74

Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLRG 378
           L G C      +LV      G +   L G
Sbjct: 75  LIGVCQAEA-LMLVMEMAGGGPLHKFLVG 102

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 67.6 bits (166), Expect = 9e-13
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 294 NILGRGGFGKVYKGRLTDG------SLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
             LG G FGKV K            + VAVK LKE  +        +E  ++    H ++
Sbjct: 29  KTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHV 88

Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++L G C      LL+  +   GS+   LR
Sbjct: 89  IKLYGACSQDGPLLLIVEYAKYGSLRGFLR 118

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 294 NILGRGGFGKVYKGRLT-----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLL 348
             LG+G FG V   R        G +VAVK+L+   T+     F+ E+E++    H N++
Sbjct: 16  QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS-TEEHLRDFEREIEILKSLQHDNIV 74

Query: 349 RLRGFCMTPTER--LLVYPFMVNGSVASCLR 377
           + +G C +   R   L+  ++  GS+   L+
Sbjct: 75  KYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 105

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 66.8 bits (164), Expect = 1e-12
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 294 NILGRGGFGKVYKGRLTDGS------LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
             LG   FGKVYKG L   +       VA+K LK++       +F+ E  + +   H N+
Sbjct: 15  EELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNV 74

Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           + L G         +++ +  +G +   L 
Sbjct: 75  VCLLGVVTKDQPLSMIFSYCSHGDLHEFLV 104

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 7/141 (4%)

Query: 72  TRVDLGNANLSGQLVSQL-GQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLN 130
             + +        + +     L++L  L+L  N            L NL  L L   NL+
Sbjct: 57  QFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116

Query: 131 GPI--PTTLGKLSKLRFLRLNNNSLMGEIPRSL-TNVNSLQVLDLSNNKLT---GDIPTN 184
           G +        L+ L  L L +N++    P S   N+    VLDL+ NK+     +   N
Sbjct: 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176

Query: 185 GSFSLFTPISFANNQLNNPPP 205
                FT +  ++  L +   
Sbjct: 177 FQGKHFTLLRLSSITLQDMNE 197

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 67.8 bits (166), Expect = 2e-12
 Identities = 28/142 (19%), Positives = 53/142 (37%), Gaps = 7/142 (4%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEEL-GNLTNLVSLDLYLNN 128
            V  VDL   +++    +   +L +LQ+L++        +       L++L+ L L  N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEI--PRSLTNVNSLQVLDLSNNKLTGDIPTNGS 186
                      L+ L  L L   +L G +        + SL++L L +N +   I     
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPASF 149

Query: 187 FSL---FTPISFANNQLNNPPP 205
           F     F  +    N++ +   
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICE 171

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 4/123 (3%)

Query: 67  SENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEE-LGNLTNLVSLDLY 125
             + V   DL  + +   L S     T+L+ L L  N I+ K+ +     LT+L+ L+L 
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLS 331

Query: 126 LNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNG 185
            N L          L KL  L L+ N +     +S   + +L+ L L  N+L   +P +G
Sbjct: 332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVP-DG 389

Query: 186 SFS 188
            F 
Sbjct: 390 IFD 392

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 65.9 bits (161), Expect = 7e-12
 Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 6/113 (5%)

Query: 93  TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPT-TLGKLSKLRFLRLNNN 151
            ++ Y++L  N+I+         L +L  L +        I   T   LS L  L+L+ N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 152 SLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSF----SLFTPISFANNQL 200
             +     +   + +L+VL L+   L G + +   F    SL   +   +N +
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL-EMLVLRDNNI 141

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 91  QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNN 150
            LT+L  L L  N +         NL  L  LDL  N++      +   L  L+ L L+ 
Sbjct: 321 GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380

Query: 151 NSLMGEIPRS-LTNVNSLQVLDLSNN 175
           N L   +P      + SLQ + L  N
Sbjct: 381 NQLK-SVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.1 bits (138), Expect = 5e-09
 Identities = 34/147 (23%), Positives = 48/147 (32%), Gaps = 14/147 (9%)

Query: 70  SVTRVDLGNANLSGQLVSQ--LGQLTNLQYLELYSNNISGKVPEEL-GNLTNLVSLDLYL 126
           ++  + L   NL G ++S      LT+L+ L L  NNI    P     N+     LDL  
Sbjct: 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163

Query: 127 NNLNGPIPTTLGKLSKLRFLRL----------NNNSLMGEIPRSLTNVNSLQVLDLSNNK 176
           N +       L       F  L          N   L  E   +     S+  LDLS N 
Sbjct: 164 NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG 223

Query: 177 LTGDIPTNGSFSLFTPISFANNQLNNP 203
              +      F         +  L+N 
Sbjct: 224 FK-ESMAKRFFDAIAGTKIQSLILSNS 249

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 24/167 (14%), Positives = 52/167 (31%), Gaps = 24/167 (14%)

Query: 31  DALNALKT-NLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQL 89
             +      +L    N ++S     +      H T    +S+T  D+    L  +     
Sbjct: 151 LNMRRFHVLDLT--FNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 90  GQLTNLQYLELYSNNISGKVPEELGNLTNLVSL-------------DLYLNNLNGPIPTT 136
            + T++  L+L  N     + +   +      +                  N   P   T
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 137 LGKL--SKLRFLRLNNNSLM---GEIPRSLTNVNSLQVLDLSNNKLT 178
              L  S ++   L+ + +      +    T+   L+ L L+ N++ 
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTD---LEQLTLAQNEIN 312

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 17/63 (26%), Positives = 26/63 (41%)

Query: 91  QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNN 150
            L  L+ L+L  N+I     +    L NL  L L  N L         +L+ L+ + L+ 
Sbjct: 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404

Query: 151 NSL 153
           N  
Sbjct: 405 NPW 407

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 7/88 (7%)

Query: 295 ILGRGGFGKVYKGRLTDGSL----VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRL 350
           ILG G FG+VY+G  T+       VAVK  K++ T   + +F +E  ++    H ++++L
Sbjct: 19  ILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKL 78

Query: 351 RGFCMT-PTERLLVYPFMVNGSVASCLR 377
            G     PT   ++      G +   L 
Sbjct: 79  IGIIEEEPT--WIIMELYPYGELGHYLE 104

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 8/123 (6%)

Query: 92  LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN 151
           LT L+ LE+ ++++    P+ L ++ N+  L L++      +   +   S +  L L + 
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232

Query: 152 SL----MGEIP----RSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNP 203
            L      E+      SL    + + + +++  L   +      S    + F+ NQL + 
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292

Query: 204 PPS 206
           P  
Sbjct: 293 PDG 295

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 7/118 (5%)

Query: 93  TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNS 152
             ++ L+L +N I+     +L    NL +L L  N +N     +   L  L  L L+ N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 153 LMGEIPRSL-TNVNSLQVLDLSNNKLTGDIPTNGSF----SLFTPISFANNQLNNPPP 205
           L   +  S    ++SL  L+L  N     +     F     L        +       
Sbjct: 112 L-SNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.4 bits (152), Expect = 7e-11
 Identities = 19/113 (16%), Positives = 48/113 (42%), Gaps = 9/113 (7%)

Query: 75  DLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIP 134
           ++  ++L       L  + N+ +L L+       +   +   +++  L+L   +L+    
Sbjct: 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239

Query: 135 T--------TLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTG 179
           +        +L K    R +++ + SL  ++ + L  ++ L  L+ S N+L  
Sbjct: 240 SELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS 291

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 22/125 (17%), Positives = 44/125 (35%), Gaps = 7/125 (5%)

Query: 92  LTNLQYLELYSNNISGKVPEEL-GNLTNLVSLDLYLNNLNGPIPT-TLGKLSKLRFLRLN 149
           L++L +L L  N         L  +LT L  L +   +    I       L+ L  L ++
Sbjct: 123 LSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID 182

Query: 150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTP---ISFANNQLNNPPPS 206
            + L    P+SL ++ ++  L L   +    +       + +    +   +  L+    S
Sbjct: 183 ASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLL-EIFVDVTSSVECLELRDTDLDTFHFS 240

Query: 207 PPPPL 211
                
Sbjct: 241 ELSTG 245

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 5/140 (3%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           +V  +DL N  ++    S L +  NLQ L L SN I+    +   +L +L  LDL  N L
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSL-TNVNSLQVLDLSNNKLTGDIPTNGSFS 188
           +    +    LS L FL L  N        SL +++  LQ+L + N      I     F+
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-RKDFA 171

Query: 189 LFT---PISFANNQLNNPPP 205
             T    +    + L +  P
Sbjct: 172 GLTFLEELEIDASDLQSYEP 191

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 53.2 bits (128), Expect = 6e-08
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 11/96 (11%)

Query: 92  LTNLQYLELYSNNISGK--------VPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKL 143
            ++++ LEL   ++               L       ++ +   +L   +   L ++S L
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGL 279

Query: 144 RFLRLNNNSLMGEIPRS-LTNVNSLQVLDLSNNKLT 178
             L  + N L   +P      + SLQ + L  N   
Sbjct: 280 LELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.8 bits (161), Expect = 2e-12
 Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 8/119 (6%)

Query: 86  VSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRF 145
           +S L  LT L+ L +  N +       + +   L  L L  N L       L  L  L  
Sbjct: 78  LSPLKDLTKLEELSVNRNRLK--NLNGIPSA-CLSRLFLDNNELRDTDS--LIHLKNLEI 132

Query: 146 LRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPP 204
           L + NN L   I   L  ++ L+VLDL  N++T +            I     +  N P
Sbjct: 133 LSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT-NTGGLTRLKKVNWIDLTGQKCVNEP 188

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.0 bits (159), Expect = 4e-12
 Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 14/135 (10%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           +  + +LG  +++   +    +L+ +Q     ++NI  +    +   TNL  L L  N +
Sbjct: 20  NAVKQNLGKQSVTD--LVSQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSHNQI 75

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVN--SLQVLDLSNNKLTGDIPTNGSF 187
           +   P  L  L+KL  L +N N L     ++L  +    L  L L NN+L  D  +    
Sbjct: 76  SDLSP--LKDLTKLEELSVNRNRL-----KNLNGIPSACLSRLFLDNNELR-DTDSLIHL 127

Query: 188 SLFTPISFANNQLNN 202
                +S  NN+L +
Sbjct: 128 KNLEILSIRNNKLKS 142

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.5 bits (155), Expect = 1e-11
 Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 8/120 (6%)

Query: 86  VSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRF 145
           V     L N     L   +++  V      L+ + + +   +N+       +   + L+ 
Sbjct: 12  VFPDPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKE 67

Query: 146 LRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPP 205
           L L++N +  ++   L ++  L+ L ++ N+L  ++    S  L + +   NN+L +   
Sbjct: 68  LHLSHNQIS-DLS-PLKDLTKLEELSVNRNRLK-NLNGIPSACL-SRLFLDNNELRDTDS 123

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 294 NILGRGGFGKVYKGRLTDGSL-----VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLL 348
            +LG G FG V+KG            V +K ++++  +         +  I    H +++
Sbjct: 19  KVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIV 78

Query: 349 RLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           RL G C   +   LV  ++  GS+   +R
Sbjct: 79  RLLGLCPGSS-LQLVTQYLPLGSLLDHVR 106

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 11/134 (8%)

Query: 249 YWRKRKPEDHFFDVPAE-EDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKG 307
           Y++ + PE  F+  P   E+P     +  R   RE++          I+G G  G+V  G
Sbjct: 15  YFQGKLPEPQFYAEPHTYEEPG----RAGRSFTREIEA--SRIHIEKIIGSGDSGEVCYG 68

Query: 308 RLTDGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV 363
           RL         VA+K LK   T+     F +E  ++    H N++RL G        ++V
Sbjct: 69  RLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIV 128

Query: 364 YPFMVNGSVASCLR 377
             +M NGS+ + LR
Sbjct: 129 TEYMENGSLDTFLR 142

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.9 bits (164), Expect = 3e-12
 Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 21/131 (16%)

Query: 91  QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLS--------- 141
             T LQ    +S+N++ ++P E  N+ +        +      P   G+           
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 142 ----KLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFAN 197
               +   L LNN  L   +P    +   L+ L  S N LT ++P          +   N
Sbjct: 68  CLDRQAHELELNNLGL-SSLPELPPH---LESLVASCNSLT-ELPE--LPQSLKSLLVDN 120

Query: 198 NQLNNPPPSPP 208
           N L      PP
Sbjct: 121 NNLKALSDLPP 131

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 13/120 (10%)

Query: 90  GQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTL-GKLSKLRFLRL 148
               +L+++   +N +  ++PE L NL  L ++    N+L       L      L  +  
Sbjct: 170 DLPPSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSL-----KKLPDLPLSLESIVA 222

Query: 149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPP 208
            NN L  E    L N+  L  +   NN L   +P          ++  +N L + P  P 
Sbjct: 223 GNNIL--EELPELQNLPFLTTIYADNNLLK-TLPD--LPPSLEALNVRDNYLTDLPELPQ 277

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 38/152 (25%), Positives = 61/152 (40%), Gaps = 29/152 (19%)

Query: 76  LGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPT 135
           L   N + + +S L     L+YL + +N +  K+PE L N + L  +D+  N+L   +P 
Sbjct: 116 LLVDNNNLKALSDL--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPD 170

Query: 136 TL-------------------GKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNK 176
                                  L  L  +  +NNSL  ++P    +   L+ +   NN 
Sbjct: 171 LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNI 226

Query: 177 LTGDIPTNGSFSLFTPISFANNQLNNPPPSPP 208
           L  ++P   +    T I   NN L   P  PP
Sbjct: 227 LE-ELPELQNLPFLTTIYADNNLLKTLPDLPP 257

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 31/143 (21%), Positives = 52/143 (36%), Gaps = 24/143 (16%)

Query: 80  NLSG-QLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLG 138
                 L +      +L+ L +  N ++  +PE   +LT L   +   + L+  +P  L 
Sbjct: 243 YADNNLLKTLPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLS-ELPPNLY 300

Query: 139 KL--------------SKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN 184
            L                L  L ++NN L+ E+P        L+ L  S N L  ++P  
Sbjct: 301 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPEL 355

Query: 185 GSFSLFTPISFANNQLNNPPPSP 207
              +L   +    N L   P  P
Sbjct: 356 PQ-NL-KQLHVEYNPLREFPDIP 376

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 29/172 (16%), Positives = 51/172 (29%), Gaps = 35/172 (20%)

Query: 66  NSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNL--------- 116
            S   +      ++NL+ ++  +   + +        +      P   G           
Sbjct: 8   VSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66

Query: 117 ----TNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDL 172
                    L+L    L+  +P     L     L  + NSL  E+P    ++ SL V + 
Sbjct: 67  DCLDRQAHELELNNLGLS-SLPELPPHLES---LVASCNSLT-ELPELPQSLKSLLVDNN 121

Query: 173 SNNKLTG----------------DIPTNGSFSLFTPISFANNQLNNPPPSPP 208
           +   L+                  +P   + S    I   NN L   P  PP
Sbjct: 122 NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPP 173

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 34/195 (17%), Positives = 68/195 (34%), Gaps = 34/195 (17%)

Query: 38  TNLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRV--DLGNANLSG-QLVSQLGQLTN 94
             L   +N L        +  T+  V+ N  + ++ +  +L   N S  ++ S      +
Sbjct: 260 EALNVRDNYLTDLPELPQS-LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPS 318

Query: 95  LQYLELYSNNISGKVPEELGNLT-----------------NLVSLDLYLNNLNGPIPTTL 137
           L+ L + +N +  ++P     L                  NL  L +  N L    P   
Sbjct: 319 LEELNVSNNKLI-ELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLRE-FPDIP 376

Query: 138 GKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFAN 197
             +  LR   +N++    E+P    N   L+ L +  N L  + P +   S+   +   +
Sbjct: 377 ESVEDLR---MNSHL--AEVPELPQN---LKQLHVETNPLR-EFP-DIPESV-EDLRMNS 425

Query: 198 NQLNNPPPSPPPPLQ 212
            ++ +P         
Sbjct: 426 ERVVDPYEFAHETTD 440

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 20/168 (11%)

Query: 44  NNVLQSWDATLVNPCTWFHVTCNSENSVTRV--DLGNANLSGQLVSQLGQL-TNLQYLEL 100
           NN+L++      +     +V  N    +  +   L   ++S  + S L +L  NL YL  
Sbjct: 246 NNLLKTLPDLPPS-LEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 304

Query: 101 YSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRS 160
            SN I   + +   +L     L++  N L   +P    +L +L     + N L  E+P  
Sbjct: 305 SSNEIR-SLCDLPPSLE---ELNVSNNKLIE-LPALPPRLERLI---ASFNHLA-EVPEL 355

Query: 161 LTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPP 208
             N   L+ L +  N L  + P          +   N+ L   P  P 
Sbjct: 356 PQN---LKQLHVEYNPLR-EFPD--IPESVEDLRM-NSHLAEVPELPQ 396

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.0 bits (120), Expect = 8e-07
 Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 23/105 (21%)

Query: 91  QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKL---------- 140
              NL+ L +  N +  + P+   ++ +L      +N+    +P     L          
Sbjct: 355 LPQNLKQLHVEYNPLR-EFPDIPESVEDL-----RMNSHLAEVPELPQNLKQLHVETNPL 408

Query: 141 -------SKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
                    +  LR+N+  ++     +    + L+     ++   
Sbjct: 409 REFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV--HRNLLRLR 351
             +G+G +G+V+ G+   G  VAVK          E  +  E E+    +  H N+L   
Sbjct: 43  KQIGKGRYGEVWMGKW-RGEKVAVKVFFTTE----EASWFRETEIYQTVLMRHENILGFI 97

Query: 352 GFCMTP----TERLLVYPFMVNGSVASCLR 377
              +      T+  L+  +  NGS+   L+
Sbjct: 98  AADIKGTGSWTQLYLITDYHENGSLYDYLK 127

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 13/137 (9%)

Query: 69  NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN 128
            ++T +D  N++++   ++ + +LT L  L   SNNI+     +L   TNL  L    N 
Sbjct: 42  ATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNK 96

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFS 188
           L   +   +  L+KL +L  + N L  ++   ++    L  L+ + N LT +I  + +  
Sbjct: 97  LTN-LD--VTPLTKLTYLNCDTNKL-TKLD--VSQNPLLTYLNCARNTLT-EIDVSHNTQ 149

Query: 189 LFTPISFANNQLNNPPP 205
           L T +    N+      
Sbjct: 150 L-TELDCHLNKKITKLD 165

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 66.6 bits (163), Expect = 4e-12
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 11/145 (7%)

Query: 68  ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLN 127
           +N  + V       +   +S   QL  L  L+ ++++I+      +  LT L  L    N
Sbjct: 18  DNFASEVAAAFEMQATDTIS-EEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSN 74

Query: 128 NLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSF 187
           N+   +   L + + L +L  ++N L   +   +T +  L  L+   NKLT  +  + + 
Sbjct: 75  NITT-LD--LSQNTNLTYLACDSNKL-TNLD--VTPLTKLTYLNCDTNKLT-KLDVSQNP 127

Query: 188 SLFTPISFANNQLNNPPPSPPPPLQ 212
            L T ++ A N L     S    L 
Sbjct: 128 LL-TYLNCARNTLTEIDVSHNTQLT 151

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.9 bits (161), Expect = 7e-12
 Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 10/124 (8%)

Query: 89  LGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL 148
           +   T L  L+ + N        ++   T L +LD   N +       + +   L  L  
Sbjct: 144 VSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNC 198

Query: 149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPP 208
           + N++  ++   L     L  LD S+NKLT +I       L      + N L     S  
Sbjct: 199 DTNNIT-KLD--LNQNIQLTFLDCSSNKLT-EIDVTPLTQLTY-FDCSVNPLTELDVSTL 253

Query: 209 PPLQ 212
             L 
Sbjct: 254 SKLT 257

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 9/118 (7%)

Query: 89  LGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL 148
           L   T L Y +        ++  ++ + T L  LD     +   +   L +  KL +L L
Sbjct: 271 LTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYL 325

Query: 149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPS 206
           NN  L  E+   +++   L+ L   N  +  D  + G          A  Q    P  
Sbjct: 326 NNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEGQTITMPKE 379

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 18/154 (11%)

Query: 67  SENSVTRVDLGNA------NLSG-QLVS-QLGQLTNLQYLELYSNNISGKVPEELGNLTN 118
           + N++T +DL              +L +  +  LT L YL   +N ++     ++     
Sbjct: 72  TSNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLT---KLDVSQNPL 128

Query: 119 LVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
           L  L+   N L       +   ++L  L  + N  + ++   +T    L  LD S NK+T
Sbjct: 129 LTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183

Query: 179 GDIPTNGSFSLFTPISFANNQLNNPPPSPPPPLQ 212
            ++  + +  L   ++   N +     +    L 
Sbjct: 184 -ELDVSQNKLL-NRLNCDTNNITKLDLNQNIQLT 215

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 17/142 (11%)

Query: 89  LGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTL--GKLSKLRFL 146
           +   T L  L+  +  I+     +L     LV L L    L     T L     +KL+ L
Sbjct: 293 VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTEL-----TELDVSHNTKLKSL 344

Query: 147 RLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPS 206
              N  +  +   S+  + +L     +  +    +P     +    I+ + + L+     
Sbjct: 345 SCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTI-TMPKETLTNNSLTIAVSPDLLDQ---- 397

Query: 207 PPPPLQPTPPGASSGNSATGAI 228
              P+   P      + AT  I
Sbjct: 398 FGNPMNIEPGDGGVYDQATNTI 419

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 29/154 (18%), Positives = 62/154 (40%), Gaps = 18/154 (11%)

Query: 67  SENSVTRVDLGNA------NLSG-QLVS-QLGQLTNLQYLELYSNNISGKVPEELGNLTN 118
             N++T++DL         + S  +L    +  LT L Y +   N ++ ++   +  L+ 
Sbjct: 199 DTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLT-ELD--VSTLSK 255

Query: 119 LVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
           L +L     +L   I   L   ++L + +      + E+   +T+   L +LD     +T
Sbjct: 256 LTTLHCIQTDLLE-ID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT 310

Query: 179 GDIPTNGSFSLFTPISFANNQLNNPPPSPPPPLQ 212
            ++  + +  L   +   N +L     S    L+
Sbjct: 311 -ELDLSQNPKLVY-LYLNNTELTELDVSHNTKLK 342

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 19/111 (17%), Positives = 50/111 (45%), Gaps = 9/111 (8%)

Query: 102 SNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSL 161
           + + +   P++  N  + V+    +   +     +  +L+ L  L  +N+S+  ++   +
Sbjct: 8   TQSFNDWFPDD--NFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSI-TDMT-GI 60

Query: 162 TNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPPPPLQ 212
             +  L  L  ++N +T  +  + + +L T ++  +N+L N   +P   L 
Sbjct: 61  EKLTGLTKLICTSNNIT-TLDLSQNTNL-TYLACDSNKLTNLDVTPLTKLT 109

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 65.7 bits (161), Expect = 3e-12
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 7/88 (7%)

Query: 296 LGRGGFGKVYKGRLTDGS------LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
           LG G FGKV+     + S      LVAVK LK+  T      FQ E E+++   H ++++
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDP-TLAARKDFQREAELLTNLQHEHIVK 81

Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLR 377
             G C      ++V+ +M +G +   LR
Sbjct: 82  FYGVCGDGDPLIMVFEYMKHGDLNKFLR 109

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 23/100 (23%), Positives = 47/100 (47%), Gaps = 2/100 (2%)

Query: 282 ELQVATDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMIS 340
           E     D   +R +LG+G +G VY GR L++   +A+K + E  ++  +     E+ +  
Sbjct: 16  EYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQ-PLHEEIALHK 74

Query: 341 MAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMF 380
              H+N+++  G         +    +  GS+++ LR  +
Sbjct: 75  HLKHKNIVQYLGSFSENGFIKIFMEQVPGGSLSALLRSKW 114

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 7/90 (7%)

Query: 294 NILGRGGFGKVYKGRLTDGS------LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
             LG G FGKV+     +        LVAVK LKE  ++     FQ E E+++M  H+++
Sbjct: 47  WELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA-SESARQDFQREAELLTMLQHQHI 105

Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +R  G C      L+V+ +M +G +   LR
Sbjct: 106 VRFFGVCTEGRPLLMVFEYMRHGDLNRFLR 135

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 66.8 bits (163), Expect = 4e-12
 Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 10/158 (6%)

Query: 61  FHVTC-NSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNIS--GKVPEELGNLT 117
            H+ C  S +S T ++      +  +      L  LQ L L  N +    KV     N++
Sbjct: 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS 403

Query: 118 NLVSLDLYLNNLN-GPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNK 176
           +L +LD+ LN+LN      T      +  L L++N L G + R L     ++VLDL NN+
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNR 461

Query: 177 LTGDIPTNGSFSLF--TPISFANNQLNNPPPSPPPPLQ 212
           +   IP      L     ++ A+NQL + P      L 
Sbjct: 462 IM-SIP-KDVTHLQALQELNVASNQLKSVPDGVFDRLT 497

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 60.3 bits (146), Expect = 4e-10
 Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 7/123 (5%)

Query: 93  TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNS 152
              + L L  N+IS     ++  L+ L  L L  N +             L +L +++N 
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 153 LMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFT---PISFANNQLNNPPPSPPP 209
           L   I      + SL+ LDLS N     +P    F   T    +  +  +       P  
Sbjct: 112 L-QNISCC--PMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 210 PLQ 212
            L 
Sbjct: 168 HLH 170

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 15/145 (10%), Positives = 35/145 (24%)

Query: 67  SENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYL 126
              ++  + +       +       L +L    + +                +    L +
Sbjct: 279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338

Query: 127 NNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGS 186
           ++            S   FL    N     + +  + +  LQ L L  N L         
Sbjct: 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM 398

Query: 187 FSLFTPISFANNQLNNPPPSPPPPL 211
               + +   +  LN+         
Sbjct: 399 TKNMSSLETLDVSLNSLNSHAYDRT 423

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.4 bits (136), Expect = 8e-09
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)

Query: 92  LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN 151
             ++  L L SN ++G V   L     +  LDL+ N +   IP  +  L  L+ L + +N
Sbjct: 427 AESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASN 483

Query: 152 SLMGEIPR-SLTNVNSLQVLDLSNN 175
            L   +P      + SLQ + L +N
Sbjct: 484 QLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 2/115 (1%)

Query: 90  GQLTNLQYLELYSNNI-SGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLS-KLRFLR 147
             + +L++L+L  N+     V +E GNLT L  L L            +  L      L 
Sbjct: 118 CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177

Query: 148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN 202
           L +  + G    SL   N+  +  + +      +  N S +    +  +N +LN+
Sbjct: 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 294 NILGRGGFGKVYKGRLTD--------GSLVAVKRLKEERTQGGELQFQTEVE-MISMAVH 344
             LG G FG+V                  VAVK LK++ T+       +E+E M  +  H
Sbjct: 41  KPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 100

Query: 345 RNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +N++ L G C       ++  +   G++   LR
Sbjct: 101 KNIINLLGACTQDGPLYVIVEYASKGNLREYLR 133

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 66.3 bits (161), Expect = 4e-12
 Identities = 24/116 (20%), Positives = 39/116 (33%), Gaps = 6/116 (5%)

Query: 64  TCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEE-LGNLTNLVSL 122
             +  + +     G  +     +  L    NL  L + +      +    L  L  L +L
Sbjct: 6   CPHGSSGLRCTRDGALDS----LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61

Query: 123 DLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
            +  + L    P       +L  L L+ N+L   +        SLQ L LS N L 
Sbjct: 62  TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 8/92 (8%)

Query: 294 NILGRGGFGKVYKGRLTD------GSLVAVKRLKEERTQGGELQFQTEVE-MISMAVHRN 346
             LGRG FG+V +              VAVK LKE  T        +E++ +I +  H N
Sbjct: 33  KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN 92

Query: 347 LLRLRGFCMTPTE-RLLVYPFMVNGSVASCLR 377
           ++ L G C  P    +++  F   G++++ LR
Sbjct: 93  VVNLLGACTKPGGPLMVIVEFCKFGNLSTYLR 124

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 65.8 bits (161), Expect = 5e-12
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 294 NILGRGGFGKVYKGRLTD--------GSLVAVKRLKEERTQGGELQFQTEVE-MISMAVH 344
             LG G FG+V                  VAVK LK++ T+       +E+E M  +  H
Sbjct: 87  KPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKH 146

Query: 345 RNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +N++ L G C       ++  +   G++   LR
Sbjct: 147 KNIINLLGACTQDGPLYVIVEYASKGNLREYLR 179

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 64.9 bits (159), Expect = 5e-12
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 353
             +G G FG V+ G   +   VA+K ++E      E  F  E E++    H  L++L G 
Sbjct: 14  QEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS--EEDFIEEAEVMMKLSHPKLVQLYGV 71

Query: 354 CMTPTERLLVYPFMVNGSVASCLR 377
           C+      LV  FM +G ++  LR
Sbjct: 72  CLEQAPICLVTEFMEHGCLSDYLR 95

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 65.0 bits (159), Expect = 5e-12
 Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 14/88 (15%)

Query: 296 LGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQ-FQTEVEMISMAVHRNLLRLRGFC 354
           +G G FG VYKG+      VAVK L        +LQ F+ EV ++    H N+L   G+ 
Sbjct: 32  IGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS 89

Query: 355 MTP-----TERLLVYPFMVNGSVASCLR 377
             P     T+      +    S+   L 
Sbjct: 90  TAPQLAIVTQ------WCEGSSLYHHLH 111

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 64.9 bits (159), Expect = 5e-12
 Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 7/117 (5%)

Query: 262 VPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLK 321
           + ++  P               ++   + +    LG G FG V  G+      VA+K +K
Sbjct: 3   LGSKNAP-----STAGLGYGSWEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIK 57

Query: 322 EERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRG 378
           E      E +F  E +++    H  L++L G C       ++  +M NG + + LR 
Sbjct: 58  EGSMS--EDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLRE 112

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 65.1 bits (159), Expect = 5e-12
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 11/90 (12%)

Query: 294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV--HRNLLRLR 351
             +G+G +G+V++G    G  VAVK          E  +  E E+ +  +  H N+L   
Sbjct: 14  ECVGKGRYGEVWRGSW-QGENVAVKIFSSR----DEKSWFRETELYNTVMLRHENILGFI 68

Query: 352 GFCMT----PTERLLVYPFMVNGSVASCLR 377
              MT     T+  L+  +   GS+   L+
Sbjct: 69  ASDMTSRHSSTQLWLITHYHEMGSLYDYLQ 98

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 296 LGRGGFGKVYKGRLTD--------GSLVAVKRLKEERTQGGELQFQTEVE-MISMAVHRN 346
           LG G FG+V                + VAVK LK + T+       +E+E M  +  H+N
Sbjct: 77  LGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN 136

Query: 347 LLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++ L G C       ++  +   G++   L+
Sbjct: 137 IINLLGACTQDGPLYVIVEYASKGNLREYLQ 167

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 64.6 bits (158), Expect = 7e-12
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 295 ILGRGGFGKVYKGRLTDGSL--------VAVKRLKEERTQGGELQFQTEVEMISMAVHRN 346
            LG+G F K++KG   +           V +K L +   +     F     M+S   H++
Sbjct: 15  SLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKA-HRNYSESFFEAASMMSKLSHKH 73

Query: 347 LLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           L+   G C+   E +LV  F+  GS+ + L+
Sbjct: 74  LVLNYGVCVCGDENILVQEFVKFGSLDTYLK 104

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 63.8 bits (156), Expect = 1e-11
 Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 5/104 (4%)

Query: 278 FSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGS----LVAVKRLKEERTQGGELQFQ 333
            S R+ ++  +       +G G FG V++G           VA+K  K   +     +F 
Sbjct: 5   SSTRDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFL 64

Query: 334 TEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
            E   +    H ++++L G         ++      G + S L+
Sbjct: 65  QEALTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFLQ 107

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 294 NILGRGGFGKVYKGRLTDGS------LVAVKRLKEERTQGGELQFQTEVE-MISMAVHRN 346
            +LG G FGKV        S       VAVK LKE+          +E++ M  +  H N
Sbjct: 51  KVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHEN 110

Query: 347 LLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++ L G C       L++ +   G + + LR
Sbjct: 111 IVNLLGACTLSGPIYLIFEYCCYGDLLNYLR 141

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 295 ILGRGGFGKVYKGRLTDGSL---VAVKRLKEERTQGGELQ-FQTEVEMISMAVHRNLLRL 350
            LG G FG V KG      +   VAVK LK E            E  ++    +  ++R+
Sbjct: 24  ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRM 83

Query: 351 RGFCMTPTERLLVYPFMVNGSVASCLR 377
            G C   +  +LV      G +   L+
Sbjct: 84  IGICEAES-WMLVMEMAELGPLNKYLQ 109

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 38/142 (26%), Positives = 55/142 (38%), Gaps = 18/142 (12%)

Query: 72  TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNG 131
           T+++L  A L    +   G L  L  L+L  N +   +P     L  L  LD+  N L  
Sbjct: 58  TQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS 114

Query: 132 PIPTTLGKLSKLRFLRLNNNSLMGEIP----RSLTNVNSLQVLDLSNNKLTGDIPTNGSF 187
                L  L +L+ L L  N L   +P            L+ L L+NN LT ++P  G  
Sbjct: 115 LPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPK---LEKLSLANNNLT-ELP-AGLL 168

Query: 188 ----SLFTPISFANNQLNNPPP 205
               +L   +    N L   P 
Sbjct: 169 NGLENL-DTLLLQENSLYTIPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 35/145 (24%), Positives = 54/145 (37%), Gaps = 11/145 (7%)

Query: 64  TCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLD 123
             +   S   V+    NL+   +       +   L L  N +       L   T L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLTA--LPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 124 LYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT 183
           L    L   +    G L  L  L L++N L   +P     + +L VLD+S N+LT  +P 
Sbjct: 62  LDRAELTK-LQ-VDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLT-SLP- 116

Query: 184 NGSFSLFTPI---SFANNQLNNPPP 205
            G+      +       N+L   PP
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPP 141

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 27/85 (31%), Positives = 30/85 (35%), Gaps = 1/85 (1%)

Query: 91  QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNN 150
            L  LQ L L  N +    P  L     L  L L  NNL       L  L  L  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 151 NSLMGEIPRSLTNVNSLQVLDLSNN 175
           NSL   IP+     + L    L  N
Sbjct: 182 NSLYT-IPKGFFGSHLLPFAFLHGN 205

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.6 bits (157), Expect = 2e-11
 Identities = 37/140 (26%), Positives = 56/140 (40%), Gaps = 18/140 (12%)

Query: 69  NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN 128
           N  + + L   NLS  L   L     +  LE+  N +   +PE   +L  L   D   N 
Sbjct: 59  NQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPASLEYL---DACDNR 111

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFS 188
           L+  +P     L  L    ++NN L   +P        L+ ++  NN+LT  +P     +
Sbjct: 112 LST-LPELPASLKHLD---VDNNQLT-MLPELPAL---LEYINADNNQLT-MLPE--LPT 160

Query: 189 LFTPISFANNQLNNPPPSPP 208
               +S  NNQL   P  P 
Sbjct: 161 SLEVLSVRNNQLTFLPELPE 180

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 62.3 bits (151), Expect = 1e-10
 Identities = 27/142 (19%), Positives = 50/142 (35%), Gaps = 11/142 (7%)

Query: 80  NLSG-QLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLG 138
           N    QL       T+L+ L + +N ++  +PE   +L    +LD+  N L   +P    
Sbjct: 146 NADNNQLTMLPELPTSLEVLSVRNNQLT-FLPELPESLE---ALDVSTNLLES-LPAVPV 200

Query: 139 KLSKLR----FLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPIS 194
           +         F R   N +   IP ++ +++    + L +N L+  I  + S     P  
Sbjct: 201 RNHHSEETEIFFRCRENRI-THIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDY 259

Query: 195 FANNQLNNPPPSPPPPLQPTPP 216
                  +        L     
Sbjct: 260 HGPRIYFSMSDGQQNTLHRPLA 281

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 58.8 bits (142), Expect = 2e-09
 Identities = 15/119 (12%), Positives = 34/119 (28%), Gaps = 4/119 (3%)

Query: 91  QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYL---NNLNGPIPTTLGKLSKLRFLR 147
              +L+ L++ +N +   +P       +    +++     N    IP  +  L     + 
Sbjct: 178 LPESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTII 236

Query: 148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPS 206
           L +N L   I  SL+   +           +       +       +       N    
Sbjct: 237 LEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSD 295

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.4 bits (120), Expect = 8e-07
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 9/113 (7%)

Query: 98  LELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTL--GKLSKLRFLRLNNNSLMG 155
              + N ISG   +            L   N N    + L    +++   L+LN  +L  
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNE-AVSLLKECLINQFSELQLNRLNLS- 72

Query: 156 EIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPP 208
            +P +L     + VL+++ N L   +P     +    +   +N+L+  P  P 
Sbjct: 73  SLPDNLP--PQITVLEITQNALI-SLPE--LPASLEYLDACDNRLSTLPELPA 120

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 15/101 (14%), Positives = 33/101 (32%), Gaps = 6/101 (5%)

Query: 72  TRVDLGNANLSGQLVSQLGQLTNLQ----YLELYSNNISGKVPEELGNLTNLVSLDLYLN 127
             +D+    L   L +   +  + +    +     N I+  +PE + +L    ++ L  N
Sbjct: 183 EALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240

Query: 128 NLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQ 168
            L+  I  +L + +                 +  T    L 
Sbjct: 241 PLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLA 281

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.6 bits (105), Expect = 5e-05
 Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 6/97 (6%)

Query: 114 GNLTNLVSLDLY--LNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLD 171
            N  +L     Y  ++       +   K  K      N N  +  +   L  +N    L 
Sbjct: 8   NNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQ 65

Query: 172 LSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPP 208
           L+   L+  +P N    + T +    N L + P  P 
Sbjct: 66  LNRLNLS-SLPDNLPPQI-TVLEITQNALISLPELPA 100

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)

Query: 294 NILGRGGFGKVYKGRLTDGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
            ++G G FG+V  GRL   S     VA+K LK   T+     F  E  ++    H N++R
Sbjct: 51  KVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIR 110

Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLR 377
           L G        ++V  +M NGS+ S LR
Sbjct: 111 LEGVVTKSKPVMIVTEYMENGSLDSFLR 138

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 64.5 bits (157), Expect = 2e-11
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 5/101 (4%)

Query: 281 RELQVATDNFSNRNILGRGGFGKVYKGRLTDGS----LVAVKRLKEERTQGGELQFQTEV 336
           R+ ++  +       +G G FG V++G           VA+K  K   +     +F  E 
Sbjct: 383 RDYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEA 442

Query: 337 EMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
             +    H ++++L G         ++      G + S L+
Sbjct: 443 LTMRQFDHPHIVKLIGVITENP-VWIIMELCTLGELRSFLQ 482

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 63.4 bits (155), Expect = 3e-11
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 7/91 (7%)

Query: 294 NILGRGGFGKVYKGRLTD------GSLVAVKRLKEERTQGGELQFQTEVE-MISMAVHRN 346
             LG G FGKV +              VAVK LK       +    +E++ M  +  H N
Sbjct: 52  KTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHEN 111

Query: 347 LLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++ L G C      L++  +   G + + LR
Sbjct: 112 IVNLLGACTHGGPVLVITEYCCYGDLLNFLR 142

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 14/148 (9%)

Query: 64  TCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLD 123
            C+ E       +   ++    +  L    + Q L+L   ++         NL N+  + 
Sbjct: 9   ECHQE---EDFRVTCKDIQR--IPSL--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIY 61

Query: 124 LYLNNLNGPIPT-TLGKLSKLRFLRLNNNSLMGEIPRS-LTNVNSLQVLDLSNNKLTGDI 181
           + ++     + + +   LSK+  + + N   +  I    L  +  L+ L + N  L    
Sbjct: 62  VSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MF 120

Query: 182 PTNGSF----SLFTPISFANNQLNNPPP 205
           P           F      N  + + P 
Sbjct: 121 PDLTKVYSTDIFFILEITDNPYMTSIPV 148

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 86  VSQLGQLTNLQYLELYSNNISGKVPEE-LGNLTN-LVSLDLYLNNLNGPIPTTLGKLSKL 143
           ++++        LE+  N     +P      L N  ++L LY N     +       +KL
Sbjct: 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKL 181

Query: 144 RFLRLNNNSLMGEIPR-SLTNVNS-LQVLDLSNNKLTGDIPTNG 185
             + LN N  +  I + +   V S   +LD+S   +T  +P+ G
Sbjct: 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG 224

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 295 ILGRGGFGKVYKGRLTDGS-----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
           ++G G FG+VYKG L   S      VA+K LK   T+   + F  E  ++    H N++R
Sbjct: 51  VIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIR 110

Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLR 377
           L G        +++  +M NG++   LR
Sbjct: 111 LEGVISKYKPMMIITEYMENGALDKFLR 138

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 63.3 bits (154), Expect = 3e-11
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV--HRNLLRLR 351
             +G+G FG+V++G+   G  VAVK          E  +  E E+    +  H N+L   
Sbjct: 48  ESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE----ERSWFREAEIYQTVMLRHENILGFI 102

Query: 352 GFCM----TPTERLLVYPFMVNGSVASCLR 377
                   T T+  LV  +  +GS+   L 
Sbjct: 103 AADNKDNGTWTQLWLVSDYHEHGSLFDYLN 132

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 63.0 bits (154), Expect = 3e-11
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 7/91 (7%)

Query: 294 NILGRGGFGKVYKGRLTD------GSLVAVKRLKEERTQGGELQFQTEVE-MISMAVHRN 346
             LG G FGKV +              VAVK LK            +E++ +  +  H N
Sbjct: 29  KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMN 88

Query: 347 LLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           ++ L G C      L++  +   G + + LR
Sbjct: 89  IVNLLGACTIGGPTLVITEYCCYGDLLNFLR 119

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 63.4 bits (155), Expect = 3e-11
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 296 LGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 354
           +GRG FG+V+ GRL   +  VAVK  +E      + +F  E  ++    H N++RL G C
Sbjct: 122 IGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 181

Query: 355 MTPTERLLVYPFMVNGSVASCLR 377
                  +V   +  G   + LR
Sbjct: 182 TQKQPIYIVMELVQGGDFLTFLR 204

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 32/89 (35%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 295 ILGRGGFGKVYKGRLTDGSL----VAVKRLKEERTQGGELQ--FQTEVEMISMAVHRNLL 348
            LG G FG V +G     S     VAVK LK +     E    F  EV  +    HRNL+
Sbjct: 25  KLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLI 84

Query: 349 RLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           RL G  +TP    +V      GS+   LR
Sbjct: 85  RLYGVVLTPP-MKMVTELAPLGSLLDRLR 112

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 294 NILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG 352
            +LG+G FG+  K      G ++ +K L     +  +  F  EV+++    H N+L+  G
Sbjct: 16  EVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEE-TQRTFLKEVKVMRCLEHPNVLKFIG 74

Query: 353 FCMTPTERLLVYPFMVNGSVASCLR 377
                     +  ++  G++   ++
Sbjct: 75  VLYKDKRLNFITEYIKGGTLRGIIK 99

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 61.8 bits (151), Expect = 5e-11
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 295 ILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 354
            LG G FG V  G+      VAVK +KE      E +F  E + +    H  L++  G C
Sbjct: 15  ELGSGQFGVVKLGKWKGQYDVAVKMIKEGSMS--EDEFFQEAQTMMKLSHPKLVKFYGVC 72

Query: 355 MTPTERLLVYPFMVNGSVASCLRG 378
                  +V  ++ NG + + LR 
Sbjct: 73  SKEYPIYIVTEYISNGCLLNYLRS 96

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 61.1 bits (149), Expect = 8e-11
 Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 15/123 (12%)

Query: 91  QLTNLQYLELYSNNISGKVPEEL-GNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN 149
           +L NL+ L +  N +   +P  +   L NL  L L  N L    P     L+KL +L L 
Sbjct: 83  ELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141

Query: 150 NNSLMGEIP----RSLTNVNSLQVLDLSNNKLTGDIPTNGSF---SLFTPISFANNQLNN 202
            N L   +P      LT+   L+ L L NN+L   +P  G+F   +    +   NNQL  
Sbjct: 142 YNEL-QSLPKGVFDKLTS---LKELRLYNNQLKR-VP-EGAFDKLTELKTLKLDNNQLKR 195

Query: 203 PPP 205
            P 
Sbjct: 196 VPE 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 5e-10
 Identities = 39/123 (31%), Positives = 52/123 (42%), Gaps = 15/123 (12%)

Query: 91  QLTNLQYLELYSNNISGKVPEEL-GNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN 149
           +LT L+ L L  N +   +P  +   L NL +L +  N L         +L  L  LRL+
Sbjct: 59  RLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117

Query: 150 NN---SLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSF----SLFTPISFANNQLNN 202
            N   SL   +  SLT    L  L L  N+L   +P  G F    SL   +   NNQL  
Sbjct: 118 RNQLKSLPPRVFDSLTK---LTYLSLGYNELQ-SLP-KGVFDKLTSL-KELRLYNNQLKR 171

Query: 203 PPP 205
            P 
Sbjct: 172 VPE 174

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 11/119 (9%)

Query: 93  TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNS 152
            + + L+L SN +S    +    LT L  L L  N L         +L  L  L + +N 
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96

Query: 153 LM---GEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISF---ANNQLNNPPP 205
           L      +   L N   L  L L  N+L   +P    F   T +++     N+L + P 
Sbjct: 97  LQALPIGVFDQLVN---LAELRLDRNQLK-SLP-PRVFDSLTKLTYLSLGYNELQSLPK 150

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 55.0 bits (133), Expect = 9e-09
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 92  LTNLQYLELYSNNISGKVPEEL-GNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNN 150
           LT L YL L  N +   +P+ +   LT+L  L LY N L         KL++L+ L+L+N
Sbjct: 132 LTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN 190

Query: 151 NSLMGEIPRSLTNVNSLQVLDLSNN 175
           N L      +  ++  L++L L  N
Sbjct: 191 NQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 20/61 (32%), Positives = 28/61 (45%)

Query: 91  QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNN 150
           +LT+L+ L LY+N +          LT L +L L  N L          L KL+ L+L  
Sbjct: 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214

Query: 151 N 151
           N
Sbjct: 215 N 215

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.4 bits (147), Expect = 9e-11
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 92  LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN 151
              L+ ++L +N IS   P+    L +L SL LY N +     +    L  L+ L LN N
Sbjct: 55  YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN 114

Query: 152 SLMGEIPR-SLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPIS 194
            +   +   +  ++++L +L L +NKL   I   G+FS    I 
Sbjct: 115 KI-NCLRVDAFQDLHNLNLLSLYDNKLQT-IA-KGTFSPLRAIQ 155

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 22/85 (25%), Positives = 34/85 (40%)

Query: 91  QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNN 150
            L +L  L LY N I+         L +L  L L  N +N         L  L  L L +
Sbjct: 78  GLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

Query: 151 NSLMGEIPRSLTNVNSLQVLDLSNN 175
           N L      + + + ++Q + L+ N
Sbjct: 138 NKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 27/120 (22%), Positives = 43/120 (35%), Gaps = 13/120 (10%)

Query: 93  TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN- 151
             +  + L  N I    P        L  +DL  N ++   P     L  L  L L  N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 152 --SLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSF----SLFTPISFANNQLNNPPP 205
              L   +   L +   LQ+L L+ NK+   +    +F    +L   +S  +N+L     
Sbjct: 92  ITELPKSLFEGLFS---LQLLLLNANKINC-LR-VDAFQDLHNL-NLLSLYDNKLQTIAK 145

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 25/143 (17%), Positives = 53/143 (37%), Gaps = 15/143 (10%)

Query: 58  CTWFHVTCNSEN----------SVTRVDLGNANLSG-QLVSQLGQLTNLQYLELYSNNIS 106
           C    V C+++               + L N   +  +      +L  L+ +   +N I+
Sbjct: 11  CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT 70

Query: 107 GKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPR-SLTNVN 165
                     + +  + L  N L          L  L+ L L +N +   +   S   ++
Sbjct: 71  DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLS 129

Query: 166 SLQVLDLSNNKLTGDIPTNGSFS 188
           S+++L L +N++T  +   G+F 
Sbjct: 130 SVRLLSLYDNQITT-VA-PGAFD 150

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 19/86 (22%), Positives = 36/86 (41%), Gaps = 2/86 (2%)

Query: 91  QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNN 150
             + +  + L SN +     +    L +L +L L  N +      +   LS +R L L +
Sbjct: 79  GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD 138

Query: 151 NSLMGEIPR-SLTNVNSLQVLDLSNN 175
           N +   +   +   ++SL  L+L  N
Sbjct: 139 NQI-TTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 55.8 bits (135), Expect = 3e-09
 Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 14/121 (11%)

Query: 93  TNLQYLELYSNNISGKVPE-ELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN 151
                L L +N  +          L  L  ++   N +           S +  + L +N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 152 SLMGEIP----RSLTNVNSLQVLDLSNNKLTGDIPTNGSF---SLFTPISFANNQLNNPP 204
            L   +     + L +   L+ L L +N++T  +  N SF   S    +S  +NQ+    
Sbjct: 92  RL-ENVQHKMFKGLES---LKTLMLRSNRIT-CVG-NDSFIGLSSVRLLSLYDNQITTVA 145

Query: 205 P 205
           P
Sbjct: 146 P 146

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 294 NILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG 352
           + LG G +G+VY+G     SL VAVK LKE+  +  E  F  E  ++    H NL++L G
Sbjct: 19  HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLKEAAVMKEIKHPNLVQLLG 76

Query: 353 FCMTPTERLLVYPFMVNGSVASCLR 377
            C       ++  FM  G++   LR
Sbjct: 77  VCTREPPFYIITEFMTYGNLLDYLR 101

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 353
             LG G FG+V+ G     + VAVK LK+         F  E  ++    H+ L+RL   
Sbjct: 19  ERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMSPDA--FLAEANLMKQLQHQRLVRLYAV 76

Query: 354 CMTPTER--LLVYPFMVNGSVASCLR 377
               T+    ++  +M NGS+   L+
Sbjct: 77  V---TQEPIYIITEYMENGSLVDFLK 99

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 353
             +G+G FG V  G    G+ VAVK +K + T      F  E  +++   H NL++L G 
Sbjct: 27  QTIGKGEFGDVMLGDYR-GNKVAVKCIKNDAT---AQAFLAEASVMTQLRHSNLVQLLGV 82

Query: 354 CMTPTERL-LVYPFMVNGSVASCLR 377
            +     L +V  +M  GS+   LR
Sbjct: 83  IVEEKGGLYIVTEYMAKGSLVDYLR 107

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.5 bits (144), Expect = 6e-10
 Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 6/118 (5%)

Query: 93  TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPT-TLGKLSKLRFLRLNNN 151
            N   L      +            +L  +++  N++   I       L KL  +R+   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 152 SLMGEIP-RSLTNVNSLQVLDLSNNKLTGDIPTN---GSFSLFTPISFANNQLNNPPP 205
           + +  I   +  N+ +LQ L +SN  +   +P      S          N  ++    
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIER 146

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.1 bits (143), Expect = 7e-10
 Identities = 26/166 (15%), Positives = 52/166 (31%), Gaps = 19/166 (11%)

Query: 58  CTWFHVTCNSEN----------SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISG 107
           C+     C              +   +      L            +L+ +E+  N++  
Sbjct: 9   CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 108 KVPEE-LGNLTNLVSLDL-YLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPR-SLTNV 164
            +  +   NL  L  + +   NNL    P     L  L++L ++N  +   +P     + 
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHS 127

Query: 165 NSLQVLDLSNNKLTGDIPTNGSFSLFTP----ISFANNQLNNPPPS 206
               +LD+ +N     I    SF   +     +    N +     S
Sbjct: 128 LQKVLLDIQDNINIHTIE-RNSFVGLSFESVILWLNKNGIQEIHNS 172

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.5 bits (126), Expect = 9e-08
 Identities = 26/122 (21%), Positives = 42/122 (34%), Gaps = 12/122 (9%)

Query: 92  LTNLQYLEL-YSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNN 150
           L  L  + +  +NN+    PE   NL NL  L +    +            +   L + +
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 137

Query: 151 NSLMGEIP----RSLTNVNSLQVLDLSNNKLTGDIPTNGSF---SLFTPISFANNQLNNP 203
           N  +  I       L+      +L L+ N +  +I  N +F    L       NN L   
Sbjct: 138 NINIHTIERNSFVGLS--FESVILWLNKNGIQ-EIH-NSAFNGTQLDELNLSDNNNLEEL 193

Query: 204 PP 205
           P 
Sbjct: 194 PN 195

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 51.8 bits (124), Expect = 2e-07
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 5/118 (4%)

Query: 91  QLTNLQYLELYSNNISGKVPEEL--GNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL 148
                  L++  N     +      G     V L L  N +     +             
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185

Query: 149 NNNSLMGEIPR-SLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPP 205
           +NN+L  E+P       +   +LD+S  ++   +P+ G  +L    + +   L   P 
Sbjct: 186 DNNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPT 241

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 5/86 (5%)

Query: 91  QLTNLQYLELYSNNISGKVPEE-LGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN 149
             T L  L L  NN   ++P +     +  V LD+    ++      L  L KLR     
Sbjct: 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 234

Query: 150 NNSLMGEIPRSLTNVNSLQVLDLSNN 175
           N     ++P +L  + +L    L+  
Sbjct: 235 NLK---KLP-TLEKLVALMEASLTYP 256

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.4 bits (139), Expect = 6e-10
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 11/95 (11%)

Query: 87  SQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFL 146
           + L  L   ++L L +NNI  K+   L  + NL  L L  N +   I         L  L
Sbjct: 42  ATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIKK-IENLDAVADTLEEL 98

Query: 147 RLNNNSLMGEIPRSLTNVN---SLQVLDLSNNKLT 178
            ++ N +      SL+ +    +L+VL +SNNK+T
Sbjct: 99  WISYNQI-----ASLSGIEKLVNLRVLYMSNNKIT 128

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 14/106 (13%)

Query: 89  LGQLTNLQYLELYSNNISGKVPEELGNLTN-LVSLDLYLNN---LNGPIPTTLGKLSKLR 144
           L  + NL+ L L  N I  K  E L  + + L  L +  N    L+G     + KL  LR
Sbjct: 66  LSGMENLRILSLGRNLI--KKIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLR 118

Query: 145 FLRLNNNSL--MGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFS 188
            L ++NN +   GEI   L  ++ L+ L L+ N L  D   N + S
Sbjct: 119 VLYMSNNKITNWGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 92  LTNLQYLELY--SNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPT--TLGKLSKLRFLR 147
            T  + +EL+     I  K+   L  L     L L  NN    I    +L  +  LR L 
Sbjct: 22  ATEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNN----IEKISSLSGMENLRILS 76

Query: 148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
           L  N +  +I       ++L+ L +S N++ 
Sbjct: 77  LGRNLIK-KIENLDAVADTLEELWISYNQIA 106

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 59.3 bits (144), Expect = 8e-10
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 353
             LG G FG+V+       + VAVK +K          F  E  ++    H  L++L   
Sbjct: 194 KKLGAGQFGEVWMATYNKHTKVAVKTMKPGSMSVEA--FLAEANVMKTLQHDKLVKLHAV 251

Query: 354 CMTPTERLLVYPFMVNGSVASCLR 377
             T     ++  FM  GS+   L+
Sbjct: 252 V-TKEPIYIITEFMAKGSLLDFLK 274

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 353
             LG+G FG+V+ G     + VA+K LK          F  E +++    H  L++L   
Sbjct: 190 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS--PEAFLQEAQVMKKLRHEKLVQLYAV 247

Query: 354 CMTPTERLLVYPFMVNGSVASCLR 377
             +     +V  +M  GS+   L+
Sbjct: 248 V-SEEPIYIVTEYMSKGSLLDFLK 270

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 58.4 bits (141), Expect = 1e-09
 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 8/98 (8%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLTD------GSLVAVKRLKEERTQGGELQFQTEVE-MIS 340
           D       LGRG FG+V +              VAVK LKE  T        +E++ +I 
Sbjct: 22  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 81

Query: 341 MAVHRNLLRLRGFCMTPTERLLV-YPFMVNGSVASCLR 377
           +  H N++ L G C  P   L+V   F   G++++ LR
Sbjct: 82  IGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLR 119

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)

Query: 294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 353
             +G+G FG V  G    G+ VAVK +K + T      F  E  +++   H NL++L G 
Sbjct: 199 QTIGKGEFGDVMLGDYR-GNKVAVKCIKNDAT---AQAFLAEASVMTQLRHSNLVQLLGV 254

Query: 354 CMTPTERL-LVYPFMVNGSVASCLR 377
            +     L +V  +M  GS+   LR
Sbjct: 255 IVEEKGGLYIVTEYMAKGSLVDYLR 279

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 44/149 (29%), Positives = 68/149 (45%), Gaps = 21/149 (14%)

Query: 66  NSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELG---NLTNLVSL 122
           N  NS+ ++   N+++  + V  +  L N++YL L  N +      ++     LTNL  L
Sbjct: 38  NELNSIDQIIANNSDI--KSVQGIQYLPNVRYLALGGNKLH-----DISALKELTNLTYL 90

Query: 123 DLYLNNLNGPIPTTLGKLSKLRFLRLNNN---SLMGEIPRSLTNVNSLQVLDLSNNKLTG 179
            L  N L         KL+ L+ L L  N   SL   +   LTN   L  L+L++N+L  
Sbjct: 91  ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN---LTYLNLAHNQLQ- 146

Query: 180 DIPTNGSF-SL--FTPISFANNQLNNPPP 205
            +P  G F  L   T +  + NQL + P 
Sbjct: 147 SLP-KGVFDKLTNLTELDLSYNQLQSLPE 174

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 12/121 (9%)

Query: 72  TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGN-LTNLVSLDLYLNNLN 130
           T + L    L         +LTNL+ L L  N +   +P+ + + LTNL  L+L  N L 
Sbjct: 88  TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ 146

Query: 131 GPIPTTLGKLSKLRFLRLNNNSLMGEIPR----SLTNVNSLQVLDLSNNKLTGDIPTNGS 186
                   KL+ L  L L+ N L   +P      LT    L+ L L  N+L   +P +G 
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQ---LKDLRLYQNQLKS-VP-DGV 200

Query: 187 F 187
           F
Sbjct: 201 F 201

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 6/88 (6%)

Query: 91  QLTNLQYLELYSNNISGKVPEEL-GNLTNLVSLDLYLNNLNGPIPT-TLGKLSKLRFLRL 148
           +LTNL YL L  N +   +P+ +   LTNL  LDL  N L   +P     KL++L+ LRL
Sbjct: 131 KLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRL 188

Query: 149 NNNSLMGEIPR-SLTNVNSLQVLDLSNN 175
             N L   +P      + SLQ + L +N
Sbjct: 189 YQNQLKS-VPDGVFDRLTSLQYIWLHDN 215

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 58.4 bits (141), Expect = 2e-09
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 7/86 (8%)

Query: 294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 353
             LG+G FG+V+ G     + VA+K LK          F  E +++    H  L++L   
Sbjct: 273 VKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS--PEAFLQEAQVMKKLRHEKLVQLYAV 330

Query: 354 CMTPTER--LLVYPFMVNGSVASCLR 377
               +E    +V  +M  GS+   L+
Sbjct: 331 V---SEEPIYIVTEYMSKGSLLDFLK 353

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 57.7 bits (139), Expect = 2e-09
 Identities = 21/155 (13%), Positives = 49/155 (31%), Gaps = 9/155 (5%)

Query: 260 FDVPAEEDPEVHLGQLKRFSL-RELQVATDNFSNRNILGRGGFGKVYKGRLTD------G 312
             V +  +      +L       E Q+ +      ++LG G F +VY+    D       
Sbjct: 36  KPVSSYPNTFEWQCKLPAIKPKTEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNK 95

Query: 313 SLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSV 372
               +K  K        +  Q  +E +  ++    ++     +     +LV      G++
Sbjct: 96  QKFVLKVQKPANPWEFYIGTQ-LMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTL 154

Query: 373 ASCLRGMFIVSGFP-SFFSYLFFIAFVQSLIQSLH 406
            + +                + F   +  +I+ +H
Sbjct: 155 LNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVH 189

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 21/129 (16%), Positives = 48/129 (37%), Gaps = 7/129 (5%)

Query: 250 WRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGR- 308
           W     +        E++  V L +  +    E +      +++  +GRG FG+V++ + 
Sbjct: 20  WSSGSAKLQRLGPETEDNEGVLLTEKLKPVDYEYREEVHWMTHQPRVGRGSFGEVHRMKD 79

Query: 309 LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMV 368
              G   AVK+++ E  +        E+   +      ++ L G         +    + 
Sbjct: 80  KQTGFQCAVKKVRLEVFR------VEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLE 133

Query: 369 NGSVASCLR 377
            GS+   ++
Sbjct: 134 GGSLGQLIK 142

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 56.9 bits (136), Expect = 4e-09
 Identities = 25/138 (18%), Positives = 46/138 (33%), Gaps = 16/138 (11%)

Query: 59  TWFHVTCNSENSVTRVDLGNANLS--GQLVSQLGQLTNLQYLELYSNNISGKVPEELG-- 114
           +W      S        L N  +     L        NL+ LE+ S  +   V E++   
Sbjct: 157 SWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGS 216

Query: 115 NLTNLVSLDLYLNNLNGPIPTTLGKLS---------KLRFLRLNNNSLMGEIPRSL---T 162
           +L NL  L LY+   +      +              L++L + +      +        
Sbjct: 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD 276

Query: 163 NVNSLQVLDLSNNKLTGD 180
            +  L+ +D+S   LT +
Sbjct: 277 ILPQLETMDISAGVLTDE 294

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.3 bits (119), Expect = 6e-07
 Identities = 20/164 (12%), Positives = 50/164 (30%), Gaps = 21/164 (12%)

Query: 38  TNLADPNNVLQSWDA---TLVNPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLG--QL 92
               D + VL +        +       +      ++  +++ +  L   +V  +    L
Sbjct: 159 IEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDL 218

Query: 93  TNLQYLELY---SNNISGKVPEEL------GNLTNLVSLDLYLNNLNGPIPTTLGK---L 140
            NL+ L LY    +                    NL  L +        +     +   L
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDIL 278

Query: 141 SKLRFLRLNNNSL----MGEIPRSLTNVNSLQVLDLSNNKLTGD 180
            +L  + ++   L       +   +  +  L+ +++  N L+ +
Sbjct: 279 PQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 45.7 bits (107), Expect = 2e-05
 Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 10/101 (9%)

Query: 88  QLGQLTNLQYLELYSNNISGKVPEELGN---LTNLVSLDLYLNNLNG----PIPTTLGKL 140
              +  NL++L +        V E       L  L ++D+    L       +   + K+
Sbjct: 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI 306

Query: 141 SKLRFLRLNNNSLMGEIPRSLTNVNSLQV-LDLSNNKLTGD 180
             L+F+ +  N L  E+ + L    SL + +D+S+++   D
Sbjct: 307 KHLKFINMKYNYLSDEMKKELQ--KSLPMKIDVSDSQEYDD 345

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 56.7 bits (137), Expect = 6e-09
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 294 NILGRGGFGKVYKGRLTDGSL-VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG 352
           + LG G +G+VY+G     SL VAVK LKE+  +    +F  E  ++    H NL++L G
Sbjct: 226 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTME--VEEFLKEAAVMKEIKHPNLVQLLG 283

Query: 353 FCMTPTERLLVYPFMVNGSVASCLR 377
            C       ++  FM  G++   LR
Sbjct: 284 VCTREPPFYIITEFMTYGNLLDYLR 308

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 27/125 (21%), Positives = 46/125 (36%), Gaps = 14/125 (11%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQ-LTNLQYLELYSNNISGK----VPEELGNLTNLVSLDL 124
            +  +D+    LS    ++L   L   Q + L    ++      +   L     L  L+L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 125 YLNNLNGPIPTTLGKL-----SKLRFLRLNNNSLMGE----IPRSLTNVNSLQVLDLSNN 175
             N L       + +       K++ L L N  L G     +  +L  + +LQ L LS+N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 176 KLTGD 180
            L   
Sbjct: 124 LLGDA 128

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 28/127 (22%), Positives = 49/127 (38%), Gaps = 18/127 (14%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQL-----TNLQYLELYSNNISGK----VPEELGNLTNLV 120
               + + N +++   V  L Q        L+ L+L S  ++      +   + +  +L 
Sbjct: 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230

Query: 121 SLDLYLNNLNGP-----IPTTLGKLSKLRFLRLNNNSL----MGEIPRSLTNVNSLQVLD 171
            L L  N L         P  L   S+LR L +    +     G++ R L    SL+ L 
Sbjct: 231 ELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS 290

Query: 172 LSNNKLT 178
           L+ N+L 
Sbjct: 291 LAGNELG 297

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 93  TNLQYLELYSNNISGKVPEELG-NLTNLVSLDLYLNNLN----GPIPTTLGKLSKLRFLR 147
            ++Q L++    +S     EL   L     + L    L       I + L     L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 148 LNNNSL----MGEIPRSLTNVN-SLQVLDLSNNKLTGD 180
           L +N L    +  + + L   +  +Q L L N  LTG 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 100

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 18/128 (14%)

Query: 69  NSVTRVDLGNANLSGQLVSQLGQL-----TNLQYLELYSNNISGK----VPEELGNLTNL 119
            S+  + L    L  +    L +        L+ L + S + +          L     L
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343

Query: 120 VSLDLYLNNLNGPIPTTLGKL-----SKLRFLRLNNNSLMGE----IPRSLTNVNSLQVL 170
           + L +  N L       L +      S LR L L +  +       +  +L   +SL+ L
Sbjct: 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLREL 403

Query: 171 DLSNNKLT 178
           DLSNN L 
Sbjct: 404 DLSNNCLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 18/134 (13%)

Query: 65  CNSENSVTRVDLGNANLSGQ----LVSQLGQLTNLQYLELYSNNISGKVPEELGN----- 115
            +S   +  + L +  ++      L   +    +L+ L L SN +      EL       
Sbjct: 195 KDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 254

Query: 116 LTNLVSLDLYLNNLNGP----IPTTLGKLSKLRFLRLNNNSLMGE----IPRSLTNVN-S 166
            + L +L ++   +       +   L     L+ L L  N L  E    +  +L      
Sbjct: 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314

Query: 167 LQVLDLSNNKLTGD 180
           L+ L + +   T  
Sbjct: 315 LESLWVKSCSFTAA 328

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 18/134 (13%)

Query: 65  CNSENSVTRVDLGNANLSGQ----LVSQLGQLTNLQYLELYSNNISGKVPEELGNL---- 116
            +  + +  + +    ++ +    L   L    +L+ L L  N +  +    L       
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP 311

Query: 117 -TNLVSLDLYLNNLNG----PIPTTLGKLSKLRFLRLNNNSLMGE----IPRSLTNVNS- 166
              L SL +   +          + L +   L  L+++NN L       + + L    S 
Sbjct: 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371

Query: 167 LQVLDLSNNKLTGD 180
           L+VL L++  ++  
Sbjct: 372 LRVLWLADCDVSDS 385

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 18/127 (14%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQ-----LTNLQYLELYSNNISGK----VPEELGNLTNLV 120
           S+  + LG+  L    +++L        + L+ L ++   I+ K    +   L    +L 
Sbjct: 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLK 287

Query: 121 SLDLYLNNLNGPIPTTLGKL-----SKLRFLRLNNNSL----MGEIPRSLTNVNSLQVLD 171
            L L  N L       L +       +L  L + + S            L     L  L 
Sbjct: 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347

Query: 172 LSNNKLT 178
           +SNN+L 
Sbjct: 348 ISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 18/127 (14%)

Query: 70  SVTRVDLGNANLSGQ----LVSQLGQLTNLQYLELYSNNISGKVPEELG-----NLTNLV 120
            +  + + + + +        S L Q   L  L++ +N +      EL        + L 
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373

Query: 121 SLDLYLNNLN----GPIPTTLGKLSKLRFLRLNNNSL----MGEIPRSLTNVNS-LQVLD 171
            L L   +++      +  TL     LR L L+NN L    + ++  S+      L+ L 
Sbjct: 374 VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 433

Query: 172 LSNNKLT 178
           L +   +
Sbjct: 434 LYDIYWS 440

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.9 bits (130), Expect = 7e-09
 Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 8/103 (7%)

Query: 80  NLSGQLV---SQLGQLTNLQYLELYSNNISGKVPEELG-NLTNLVSLDLYLNNLNGPIPT 135
            L+ +L+   +Q       + L+L    I   V E LG  L    ++D   N +   +  
Sbjct: 3   KLTAELIEQAAQYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIR-KL-D 58

Query: 136 TLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
               L +L+ L +NNN +          +  L  L L+NN L 
Sbjct: 59  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 92  LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN 151
           L     ++   N I  K+ +    L  L +L +  N +          L  L  L L NN
Sbjct: 41  LDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN 98

Query: 152 SL--MGEIPRSLTNVNSLQVLDLSNNKLT 178
           SL  +G++   L ++ SL  L +  N +T
Sbjct: 99  SLVELGDL-DPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.0 bits (107), Expect = 7e-06
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 1/67 (1%)

Query: 86  VSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGP-IPTTLGKLSKLR 144
           +     L  L+ L + +N I          L +L  L L  N+L        L  L  L 
Sbjct: 57  LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 145 FLRLNNN 151
           +L +  N
Sbjct: 117 YLCILRN 123

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 56.1 bits (135), Expect = 7e-09
 Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 4/114 (3%)

Query: 271 HLGQLKRFSLRELQVATDNFSNRNILGRG--GFGKVYKGR-LTDGSLVAVKRLKEERTQG 327
           H+  L    +         +    ++G+G      V   R    G  V V+R+  E    
Sbjct: 8   HMENLYFQGMSSFLPEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSN 67

Query: 328 GELQF-QTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMF 380
             + F Q E+ +  +  H N++  R   +   E  +V  FM  GS    +   F
Sbjct: 68  EMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHF 121

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 5/105 (4%)

Query: 76  LGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPT 135
             + +  G+L     +   L++L   +  ++  +   L  L  L  L+L  N ++G +  
Sbjct: 25  DNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEV 82

Query: 136 TLGKLSKLRFLRLNNNSL--MGEIPRSLTNVNSLQVLDLSNNKLT 178
              K   L  L L+ N +  +  I   L  + +L+ LDL N ++T
Sbjct: 83  LAEKCPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 9/91 (9%)

Query: 92  LTNLQYLELYSNNIS-GKVPEELGNLTNLVSLDL---YLNNLNGPIPTTLGKLSKLRFLR 147
            ++++ L L ++  + GK+         L  L      L ++       L KL+KL+ L 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-----LPKLNKLKKLE 70

Query: 148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
           L++N + G +        +L  L+LS NK+ 
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK 101

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 10/94 (10%)

Query: 115 NLTNLVSLDLYLNNLN-GPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNV---NSLQVL 170
             +++  L L  +  N G +     +  +L FL   N  L      S+ N+   N L+ L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-----TSIANLPKLNKLKKL 69

Query: 171 DLSNNKLTGDIPT-NGSFSLFTPISFANNQLNNP 203
           +LS+N+++G +          T ++ + N++ + 
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDL 103

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 276 KRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRL-KEERTQGGELQFQT 334
           +    + + V    +S    +G GG  KV++       + A+K +  EE        ++ 
Sbjct: 16  ENLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRN 75

Query: 335 EVEMISMAVHRNL--LRLRGFCMTPTERLLVYPFM--VNGSVASCLR 377
           E+  ++     +   +RL  + +T      +Y  M   N  + S L+
Sbjct: 76  EIAYLNKLQQHSDKIIRLYDYEITDQY---IYMVMECGNIDLNSWLK 119

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 11/114 (9%)

Query: 93  TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN- 151
            + + L+L S  ++         LT L  L+L  N L          L++L  L L NN 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94

Query: 152 --SLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSF-SL--FTPISFANNQL 200
             SL   +   LT    L  L L  N+L   +P +G F  L     +    NQL
Sbjct: 95  LASLPLGVFDHLTQ---LDKLYLGGNQLKS-LP-SGVFDRLTKLKELRLNTNQL 143

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 38/102 (37%), Positives = 51/102 (50%), Gaps = 12/102 (11%)

Query: 91  QLTNLQYLELYSNNISGKVPEEL-GNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN 149
            LT L  L L +N ++  +P  +  +LT L  L L  N L         +L+KL+ LRLN
Sbjct: 81  DLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139

Query: 150 NNSLMGEIP----RSLTNVNSLQVLDLSNNKLTGDIPTNGSF 187
            N L   IP      LTN   LQ L LS N+L   +P +G+F
Sbjct: 140 TNQLQ-SIPAGAFDKLTN---LQTLSLSTNQLQS-VP-HGAF 175

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 91  QLTNLQYLELYSNNISGKVPEEL-GNLTNLVSLDLYLNNLNGPIPT-TLGKLSKLRFLRL 148
            LT L  L L  N +   +P  +   LT L  L L  N L   IP     KL+ L+ L L
Sbjct: 105 HLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSL 162

Query: 149 NNNSLMGEIPR-SLTNVNSLQVLDLSNN 175
           + N L   +P  +   +  LQ + L  N
Sbjct: 163 STNQLQS-VPHGAFDRLGKLQTITLFGN 189

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHR 345
             +F    +LG+G FG+V K R   D    A+K+++   T+       +EV +++   H+
Sbjct: 5   ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIR--HTEEKLSTILSEVMLLASLNHQ 62

Query: 346 NLLRLRGF 353
            ++R    
Sbjct: 63  YVVRYYAA 70

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 6/89 (6%)

Query: 295 ILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGEL-QFQTEVEMISMAVHRNLLRLRG 352
            +GRG F  VYKG        VA   L++ +    E  +F+ E EM+    H N++R   
Sbjct: 33  EIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYD 92

Query: 353 FCMTPTE---RLLVYP-FMVNGSVASCLR 377
              +  +    +++    M +G++ + L+
Sbjct: 93  SWESTVKGKKCIVLVTELMTSGTLKTYLK 121

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 77  GNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTT 136
              +  G++     +  NL++L L +  +   V   L  L  L  L+L  N + G +   
Sbjct: 33  NCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGLDML 90

Query: 137 LGKLSKLRFLRLNNNSL--MGEIPRSLTNVNSLQVLDLSNNKLT 178
             KL  L  L L+ N L  +  +   L  +  L+ LDL N ++T
Sbjct: 91  AEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 7/101 (6%)

Query: 78  NANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTL 137
           +  L  +  + + +L     L+   +N  GK+        NL  L L    L     + L
Sbjct: 15  HLELRNRTPAAVRELV----LDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI--SVSNL 67

Query: 138 GKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
            KL KL+ L L+ N + G +      + +L  L+LS NKL 
Sbjct: 68  PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 115 NLTNLVSLDLYLNNLN-GPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLS 173
               +  L L     N G I     +   L FL L N  L+  +  +L  +  L+ L+LS
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELS 79

Query: 174 NNKLTGDIPTNG-SFSLFTPISFANNQLNNP 203
            N++ G +          T ++ + N+L + 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 110

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 6/102 (5%)

Query: 281 RELQVATDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMI 339
             + +   ++     LG GGF  V     L DG   A+KR+     Q  E + Q E +M 
Sbjct: 22  HMVIIDNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDRE-EAQREADMH 80

Query: 340 SMAVHRNLLRLRGFCMTPTER----LLVYPFMVNGSVASCLR 377
            +  H N+LRL  +C+          L+ PF   G++ + + 
Sbjct: 81  RLFNHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIE 122

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 20/94 (21%), Positives = 39/94 (41%), Gaps = 1/94 (1%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRN 346
           D++  + ++G G    V           VA+KR+  E+ Q    +   E++ +S   H N
Sbjct: 15  DDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPN 74

Query: 347 LLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMF 380
           ++      +   E  LV   +  GSV   ++ + 
Sbjct: 75  IVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIV 108

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 284 QVATDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRL-KEERTQGG-ELQFQTEVEMIS 340
           Q A ++F     LG+G FG VY  R      ++A+K L K +  + G E Q + EVE+ S
Sbjct: 5   QWALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQS 64

Query: 341 MAVHRNLLRLRGFCMTPTERLLVYPFMVNG 370
              H N+LRL G+    T   L+  +   G
Sbjct: 65  HLRHPNILRLYGYFHDATRVYLILEYAPLG 94

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 16/117 (13%)

Query: 93  TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNS 152
            ++  L L  N  +  VP+EL N  +L  +DL  N ++     +   +++L  L L+ N 
Sbjct: 31  RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89

Query: 153 LMGEIPR----SLTNVNSLQVLDLSNNKLTGDIPTNGSF----SLFTPISFANNQLN 201
           L   IP      L +   L++L L  N ++  +P  G+F    +L + ++   N L 
Sbjct: 90  LR-CIPPRTFDGLKS---LRLLSLHGNDISV-VP-EGAFNDLSAL-SHLAIGANPLY 139

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
            VT + L + N    +  +L    +L  ++L +N IS    +   N+T L++L L  N L
Sbjct: 32  DVTELYL-DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPR-SLTNVNSLQVLDLSNN 175
               P T   L  LR L L+ N +   +P  +  ++++L  L +  N
Sbjct: 91  RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 53.7 bits (129), Expect = 5e-08
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 8/89 (8%)

Query: 294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQ-FQTEVEMISMAVHRNL--LRL 350
             +G GG  KV++       + A+K +  E      L  ++ E+  ++     +   +RL
Sbjct: 62  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 121

Query: 351 RGFCMTPTERLLVYPFM--VNGSVASCLR 377
             + +T      +Y  M   N  + S L+
Sbjct: 122 YDYEITDQY---IYMVMECGNIDLNSWLK 147

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 53.2 bits (128), Expect = 5e-08
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 8/89 (8%)

Query: 294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQ-FQTEVEMISMAVHRNL--LRL 350
             +G GG  KV++       + A+K +  E      L  ++ E+  ++     +   +RL
Sbjct: 15  KQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRL 74

Query: 351 RGFCMTPTERLLVYPFM--VNGSVASCLR 377
             + +T      +Y  M   N  + S L+
Sbjct: 75  YDYEITDQY---IYMVMECGNIDLNSWLK 100

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 53.2 bits (128), Expect = 7e-08
 Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 20/180 (11%)

Query: 194 SFANNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAAPAIALAYWRKR 253
           S  +N+ N         ++  P   +         +       +    A A  L   + +
Sbjct: 9   SGVDNKFNKERRRARREIRHLP-NLNREQRRAFIRSLRDDPSQSANLLAEAKKLNDAQPK 67

Query: 254 KPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKG--RLTD 311
             E+ +F     ED        K F           +  ++++GRG    V +   R T 
Sbjct: 68  GTENLYFQSMGPEDELPDWAAAKEF--------YQKYDPKDVIGRGVSSVVRRCVHRAT- 118

Query: 312 GSLVAVK-------RLKEERTQGGELQFQTEVE-MISMAVHRNLLRLRGFCMTPTERLLV 363
           G   AVK       RL  E+ +      + E   +  +A H +++ L     + +   LV
Sbjct: 119 GHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYESSSFMFLV 178

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 52.5 bits (126), Expect = 9e-08
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 284 QVATDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMA 342
             +   +   +ILG+G    V++GR    G L A+K                E E++   
Sbjct: 5   STSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL 64

Query: 343 VHRNLLRLRGFCMTPTERLLVYPFMV 368
            H+N+++L       T R   +  ++
Sbjct: 65  NHKNIVKLFAIEEETTTR---HKVLI 87

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 71/483 (14%), Positives = 138/483 (28%), Gaps = 173/483 (35%)

Query: 37  KTNLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQ 96
           KT +A   +V  S+            V C  +  +  ++L N N    +   L  L  L 
Sbjct: 163 KTWVA--LDVCLSYK-----------VQCKMDFKIFWLNLKNCNSPETV---LEMLQKLL 206

Query: 97  YLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGE 156
           Y       I            N  S   + +N+   I +   +L +L   +   N L+  
Sbjct: 207 Y------QIDP----------NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-- 248

Query: 157 IPRSLTNVNSLQVL-------------------DLSNNKLTGDIPTNGSFSLFTPIS--- 194
           +   L NV + +                     D  +   T  I  +      TP     
Sbjct: 249 V---LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 195 -FANNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAAPAIALAYWRKR 253
                 L+  P      L   P    + N    +I          +    A     W+  
Sbjct: 306 LLLKY-LDCRPQD----L---PREVLTTNPRRLSIIA------ESIRDGLAT-WDNWKHV 350

Query: 254 KPE------DHFFDV--PAE------------ED---PEVHLGQL-KRFSLRELQVATDN 289
             +      +   +V  PAE                 P + L  +       ++ V  + 
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410

Query: 290 FSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISM-AVHRNLL 348
                                  SLV  K+ KE       +  + +V++ +  A+HR+++
Sbjct: 411 LHKY-------------------SLVE-KQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 349 R----LRGFC-----------------------MTPTERLLVYP-------FM------- 367
                 + F                        +   ER+ ++        F+       
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD 510

Query: 368 -----VNGSVASCLRGM-----FIVSGFPSFFSYLF-FIAFVQSLIQSLHFAKYSC-VSI 415
                 +GS+ + L+ +     +I    P +   +   + F+  + ++L  +KY+  + I
Sbjct: 511 STAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570

Query: 416 LLF 418
            L 
Sbjct: 571 ALM 573

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 1/92 (1%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHR 345
            + F+    +G+G FG+V+KG       +VA+K +  E  +      Q E+ ++S     
Sbjct: 21  EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSP 80

Query: 346 NLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
            + +  G  +  T+  ++  ++  GS    L 
Sbjct: 81  YVTKYYGSYLKDTKLWIIMEYLGGGSALDLLE 112

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 296 LGRGGFGKVYKGR-LTDGSLVAVKRL-KEERTQGG-ELQFQTEVEMISMAVHRNLLRLRG 352
           LG+G FG VY  R   +  ++A+K L K +  + G E Q + E+E+ S   H N+LR+  
Sbjct: 22  LGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYN 81

Query: 353 FCMTPTERLLVYPFMVNG 370
           +        L+  F   G
Sbjct: 82  YFHDRKRIYLMLEFAPRG 99

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRN 346
            +F    ++G GGFG+V+K +   DG    +KR+K         + + EV+ ++   H N
Sbjct: 11  MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN-----EKAEREVKALAKLDHVN 65

Query: 347 LLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIV 382
           ++   G                + S   CL   FI 
Sbjct: 66  IVHYNGCWDGFDYDPETSSKNSSRSKTKCL---FIQ 98

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 92  LTNLQYLELYSNNISGKVPEEL-GNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNN 150
           L NL+ L L SN +   +P  +  +LT L  LDL  N L         +L  L+ L +  
Sbjct: 63  LINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC 121

Query: 151 NSLMGEIPRSLTNVNSLQVLDLSNNKL 177
           N L  E+PR +  +  L  L L  N+L
Sbjct: 122 NKL-TELPRGIERLTHLTHLALDQNQL 147

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 91  QLTNLQYLELYSNNISGKVPEEL-GNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN 149
            LT L  L+L +N ++  +P  +   L +L  L +  N L   +P  + +L+ L  L L+
Sbjct: 86  SLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALD 143

Query: 150 NNSLMGEIPRSLTNVNSLQVLDLSNN 175
            N L      +   ++SL    L  N
Sbjct: 144 QNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 37/122 (30%), Positives = 49/122 (40%), Gaps = 20/122 (16%)

Query: 93  TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTL-----GKLSKLRFLR 147
           TN Q L L+ N I+   P    +L NL  L L  N L       L       L++L  L 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-----GALPVGVFDSLTQLTVLD 94

Query: 148 LNNNSLMGEIPR---SLTNVNSLQVLDLSNNKLTGDIPTNGSFSL--FTPISFANNQLNN 202
           L  N L          L +   L+ L +  NKLT  +P  G   L   T ++   NQL +
Sbjct: 95  LGTNQLTVLPSAVFDRLVH---LKELFMCCNKLTE-LP-RGIERLTHLTHLALDQNQLKS 149

Query: 203 PP 204
            P
Sbjct: 150 IP 151

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 10/85 (11%)

Query: 296 LGRGGFGKVYKGR-LTDGSLVAVK-----RLKEERTQGGELQFQTEVEMISM----AVHR 345
           LG+GGFG V+ G  LTD   VA+K     R+         +    EV ++        H 
Sbjct: 39  LGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHP 98

Query: 346 NLLRLRGFCMTPTERLLVYPFMVNG 370
            ++RL  +  T    +LV    +  
Sbjct: 99  GVIRLLDWFETQEGFMLVLERPLPA 123

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 22/131 (16%)

Query: 70  SVTRVDLGNANLSGQ----LVSQLGQLTNLQYLELYSNNISGK----VPEELGNLTNLVS 121
           S+    L    ++ +    + + L +  +++ + L  N I  +    + E + +  +L  
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 122 LDLYLNNLNGPIPTT----------LGKLSKLRFLRLNNNSL----MGEIPRSLTNVNSL 167
            +                       L K  KL  +RL++N+        +   L+    L
Sbjct: 65  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 168 QVLDLSNNKLT 178
           + L L NN L 
Sbjct: 125 EHLYLHNNGLG 135

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 15/118 (12%), Positives = 40/118 (33%), Gaps = 13/118 (11%)

Query: 76  LGNANLSGQLVSQLGQLTNLQYLELYSNNISGK----VPEELGNLTNLVSLDLYLNNLN- 130
           +  A     +  +      L+ +    N +         +   +   L ++ +  N +  
Sbjct: 142 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 201

Query: 131 ----GPIPTTLGKLSKLRFLRLNNNSL----MGEIPRSLTNVNSLQVLDLSNNKLTGD 180
                 +   L    +L+ L L +N+        +  +L +  +L+ L L++  L+  
Sbjct: 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 25/131 (19%), Positives = 40/131 (30%), Gaps = 21/131 (16%)

Query: 70  SVTRVDLGNANLSGQ----LVSQLGQLTNLQYLELYSNNISGK-----VPEELGNLTNLV 120
            +  +  G   L                 L  +++  N I  +     + E L     L 
Sbjct: 160 PLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELK 219

Query: 121 SLDLYLNNLNGP-----IPTTLGKLSKLRFLRLNNNSL----MGEIPRSLTNVN--SLQV 169
            LDL  N          +   L     LR L LN+  L       +  + + +    LQ 
Sbjct: 220 VLDLQDNTF-THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 278

Query: 170 LDLSNNKLTGD 180
           L L  N++  D
Sbjct: 279 LRLQYNEIELD 289

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 24/135 (17%), Positives = 39/135 (28%), Gaps = 21/135 (15%)

Query: 67  SENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNL----TNLVSL 122
           S+    RV          L+  L +   L  + L  N       E L +     T L  L
Sbjct: 68  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 127

Query: 123 DLYLNNL-------------NGPIPTTLGKLSKLRFLRLNNNSL----MGEIPRSLTNVN 165
            L+ N L                +         LR +    N L    M E  ++  +  
Sbjct: 128 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187

Query: 166 SLQVLDLSNNKLTGD 180
            L  + +  N +  +
Sbjct: 188 LLHTVKMVQNGIRPE 202

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 15/119 (12%)

Query: 75  DLGNANLSGQLVSQLGQLTNLQYLELYSNNISGK----VPEELGNLTNLVSLDLYLNNLN 130
            +    +   L+  L     L+ L+L  N  +      +   L +  NL  L L    L+
Sbjct: 198 GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257

Query: 131 GP----IPTTLGKLS--KLRFLRLNNNSLMGE----IPRSL-TNVNSLQVLDLSNNKLT 178
                 +     KL    L+ LRL  N +  +    +   +   +  L  L+L+ N+ +
Sbjct: 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 284 QVATDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMA 342
             +   +   +ILG+G    V++GR    G L A+K                E E++   
Sbjct: 5   STSNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL 64

Query: 343 VHRNLLRLRGFCMTPTERLLVYPFMV 368
            H+N+++L       T R   +  ++
Sbjct: 65  NHKNIVKLFAIEEETTTR---HKVLI 87

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 91  QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPT-TLGKLSKLRFLRLN 149
           +L +L  LEL  N ++G  P      +++  L L  N +   I       L +L+ L L 
Sbjct: 52  RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTLNLY 110

Query: 150 NNSLMGEIPR-SLTNVNSLQVLDLSNN 175
           +N +   +   S  ++NSL  L+L++N
Sbjct: 111 DNQISC-VMPGSFEHLNSLTSLNLASN 136

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 24/176 (13%)

Query: 197 NNQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAAPAIALAYWRKRKPE 256
           N    + P  P  P+                  G +  G                    +
Sbjct: 86  NKHGQSKPCEPTAPVLIPGDERKRRRGYDVDEQGKIVRGKGT------------VSSNYD 133

Query: 257 DHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKG--RLTDGSL 314
           ++ FD+  +  P+    +             D++     LG G FG V++   R T G+ 
Sbjct: 134 NYVFDIWKQYYPQPVEIKHDHVL--------DHYDIHEELGTGAFGVVHRVTERAT-GNN 184

Query: 315 VAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNG 370
            A K +        E   + E++ +S+  H  L+ L        E +++Y FM  G
Sbjct: 185 FAAKFVMTPHESDKE-TVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGG 239

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRN 346
            +F     +GRGGFG V++ +   D    A+KR++    +    +   EV+ ++   H  
Sbjct: 6   TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 65

Query: 347 LLRLRGFCMT 356
           ++R     + 
Sbjct: 66  IVRYFNAWLE 75

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 12/123 (9%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGN-LTNLVSLDLYLNN 128
             T +DL   +L         +LT+L  L L  N +   +P  + N LT+L  L+L  N 
Sbjct: 29  QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ 87

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPR----SLTNVNSLQVLDLSNNKLTGDIPTN 184
           L         KL++L+ L LN N L   +P      LT    L+ L L  N+L   +P +
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQ---LKDLRLYQNQLKS-VP-D 141

Query: 185 GSF 187
           G F
Sbjct: 142 GVF 144

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 13/119 (10%)

Query: 93  TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNS 152
               YL+L +N++          LT+L  L L  N L         KL+ L +L L+ N 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 153 LMGEIPR----SLTNVNSLQVLDLSNNKLTGDIPTNGSF---SLFTPISFANNQLNNPP 204
           L   +P      LT    L+ L L+ N+L   +P +G F   +    +    NQL + P
Sbjct: 88  LQ-SLPNGVFDKLTQ---LKELALNTNQLQS-LP-DGVFDKLTQLKDLRLYQNQLKSVP 140

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 91  QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPT-TLGKLSKLRFLRLN 149
           +LT+L YL L +N +          LT L  L L  N L   +P     KL++L+ LRL 
Sbjct: 74  KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLY 132

Query: 150 NNSLMGEIPR-SLTNVNSLQVLDLSNN 175
            N L   +P      + SLQ + L +N
Sbjct: 133 QNQLKS-VPDGVFDRLTSLQYIWLHDN 158

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 3/85 (3%)

Query: 296 LGRGGFGKVYKGR-LTDGSLVAVKRL-KEERTQGG-ELQFQTEVEMISMAVHRNLLRLRG 352
           LG+G F  VY+   +  G  VA+K + K+   + G   + Q EV++     H ++L L  
Sbjct: 19  LGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYN 78

Query: 353 FCMTPTERLLVYPFMVNGSVASCLR 377
           +        LV     NG +   L+
Sbjct: 79  YFEDSNYVYLVLEMCHNGEMNRYLK 103

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 9/117 (7%)

Query: 240 FAAPAIALAYWRKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRG 299
                +      + +P    F   A E  +       R      Q    +F   + LG G
Sbjct: 13  LGTENLYFQSMHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQ----SFQRLSRLGHG 68

Query: 300 GFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV---HRNLLRLRG 352
            +G+V+K R   DG L AVKR         +   +   E+ S      H   +RL  
Sbjct: 69  SYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRA-RKLAEVGSHEKVGQHPCCVRLEQ 124

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRN 346
            +F     LGRGGFG V++ +   D    A+KR++    +    +   EV+ ++   H  
Sbjct: 5   TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG 64

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 296 LGRGGFGKVYKGR-LTDGSLVAVK-----RLKEERTQGGELQFQTEVEMISMAVHR--NL 347
           LG GGFG VY G  ++D   VA+K     R+ +        +   EV ++         +
Sbjct: 51  LGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGV 110

Query: 348 LRLRGFCMTPTERLLV 363
           +RL  +   P   +L+
Sbjct: 111 IRLLDWFERPDSFVLI 126

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 9/69 (13%)

Query: 296 LGRGGFGKVYKGRLTD-GSLVAVK-----RLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
           LG+GGF K ++    D   + A K      L +   +    +   E+ +     H++++ 
Sbjct: 23  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQRE---KMSMEISIHRSLAHQHVVG 79

Query: 350 LRGFCMTPT 358
             GF     
Sbjct: 80  FHGFFEDND 88

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 28/173 (16%), Positives = 56/173 (32%), Gaps = 21/173 (12%)

Query: 198 NQLNNPPPSPPPPLQPTPPGASSGNSATGAIAGGVAAGAALLFAAPAIALAYWRKRKPED 257
           +  ++        L       S    +           +              + ++   
Sbjct: 6   HHHSSGVDLGTENLYFQSMKNSGDQDSRSGHNEAKEVWSNADLTERMPV----KSKRTSA 61

Query: 258 HFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSN------RNILGRGGFGKVYKGR-LT 310
              D+PA   P         F  R +       ++        ILG G FG+V+K     
Sbjct: 62  LAVDIPAPPAP---------FDHRIVTAKQGAVNSFYTVSKTEILGGGRFGQVHKCEETA 112

Query: 311 DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV 363
            G  +A K +K    +  E + + E+ +++   H NL++L     +  + +LV
Sbjct: 113 TGLKLAAKIIKTRGMKDKE-EVKNEISVMNQLDHANLIQLYDAFESKNDIVLV 164

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-- 343
           T  F     +G G FG V+K     DG + A+KR K+      + Q     E+ + AV  
Sbjct: 10  TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQ-NALREVYAHAVLG 68

Query: 344 -HRNLLRLRG 352
            H +++R   
Sbjct: 69  QHSHVVRYFS 78

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 2/84 (2%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHR 345
              +  +  LG GGFG V +      G  VA+K+ ++E +     ++  E++++    H 
Sbjct: 13  CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHP 72

Query: 346 NLLRLRGFCMTPTE-RLLVYPFMV 368
           N++  R       +      P + 
Sbjct: 73  NVVSAREVPDGLQKLAPNDLPLLA 96

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 5/77 (6%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVE-MISMAVHRN 346
           +   +  ILG G  G V       G  VAVKR+  +           E++ +     H N
Sbjct: 15  NLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFCD----IALMEIKLLTESDDHPN 70

Query: 347 LLRLRGFCMTPTERLLV 363
           ++R      T     + 
Sbjct: 71  VIRYYCSETTDRFLYIA 87

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 17/117 (14%)

Query: 253 RKPEDHFFDVPAEEDP-----------EVHLGQLKRFSLRELQVATD---NFSNRNILGR 298
                H +D+P  E+                G LK   + EL    D    FS+   +G 
Sbjct: 5   HHHHHHDYDIPTTENLYFQGAMDPMPAGGRAGSLKDPDVAELFFKDDPEKLFSDLREIGH 64

Query: 299 GGFGKVYKGR-LTDGSLVAVKR--LKEERTQGGELQFQTEVEMISMAVHRNLLRLRG 352
           G FG VY  R + +  +VA+K+     +++         EV  +    H N ++ RG
Sbjct: 65  GSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRG 121

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 296 LGRGGFGKVYKGRLTD-GSLVAVK-----RLKEERTQGGELQFQTEVEMISMAVHRNLLR 349
           LG+GGF K ++    D   + A K      L +   +    +   E+ +     H++++ 
Sbjct: 49  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQRE---KMSMEISIHRSLAHQHVVG 105

Query: 350 LRGFCMTPTERLLVYPFMVNGSV 372
             GF        +V       S+
Sbjct: 106 FHGFFEDNDFVFVVLELCRRRSL 128

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 20/129 (15%), Positives = 45/129 (34%), Gaps = 18/129 (13%)

Query: 296 LGRGGFGKVYKGRLTDGSLVAVKRLK----------------EERTQGGELQFQTEVEMI 339
           L +G F K+           A+K+ +                +   +     F+ E+++I
Sbjct: 39  LNQGKFNKIILCEKD-NKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQII 97

Query: 340 SMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPS-FFSYLFFIAFV 398
           +   +   L   G      E  ++Y +M N S+       F++    + F         +
Sbjct: 98  TDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCII 157

Query: 399 QSLIQSLHF 407
           +S++ S  +
Sbjct: 158 KSVLNSFSY 166

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 20/129 (15%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQL-----TNLQYLELYSNNISGKVPEELG-----NLTNL 119
            VT +DL   NL      +L Q       ++  L L  N++  K  +EL         N+
Sbjct: 23  GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82

Query: 120 VSLDLYLNNLNGPIPTTLGKL-----SKLRFLRLNNNSL----MGEIPRSLTNVN-SLQV 169
            SL+L  N L+      L K        +  L L  N        E  ++ +N+  S+  
Sbjct: 83  TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142

Query: 170 LDLSNNKLT 178
           L+L  N L 
Sbjct: 143 LNLRGNDLG 151

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 15/105 (14%)

Query: 89  LGQLTNLQYLELYSNNISGKVPEELG-----NLTNLVSLDLYLNNLNGPIPTTLGKL--- 140
                 +  L+L  NN+      EL         ++ SL+L  N+L       L ++   
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 141 --SKLRFLRLNNNSL----MGEIPRSLTNVN-SLQVLDLSNNKLT 178
             + +  L L+ N L      E+ ++L  +  ++ VLDL  N  +
Sbjct: 78  IPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 25/132 (18%), Positives = 57/132 (43%), Gaps = 21/132 (15%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQL-----TNLQYLELYSNNISGKVPEELG-----NLTNL 119
           +V  ++L   NL+ +  ++L +       ++  L+L +N +  K   EL         ++
Sbjct: 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227

Query: 120 VSLDLYLNNLNGP----IPTTLGKLSKLRFLRLNNNSL-------MGEIPRSLTNVNSLQ 168
           VSL+L LN L+GP    +      L  L+ + L+ + +          +  +  N+  + 
Sbjct: 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287

Query: 169 VLDLSNNKLTGD 180
           ++D +  ++   
Sbjct: 288 LVDKNGKEIHPS 299

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 19/128 (14%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQL-----TNLQYLELYSNNISGKVPEELGNL-----TNL 119
           S+T ++L   +L  +   +L Q+      N+  L L  NN++ K   EL         ++
Sbjct: 139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASV 198

Query: 120 VSLDLYLNNLNGPIPTTLGKL-----SKLRFLRLNNNSL----MGEIPRSLTNVNSLQVL 170
            SLDL  N L       L  +     + +  L L  N L    +  +     ++  LQ +
Sbjct: 199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV 258

Query: 171 DLSNNKLT 178
            L  + + 
Sbjct: 259 YLDYDIVK 266

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 12/110 (10%)

Query: 273 GQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQ 331
             L    L  L+     F    ++G G +G+VYKGR +  G L A+K +      G E +
Sbjct: 9   RSLDEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT---GDEEE 65

Query: 332 -FQTEVEMIS-MAVHRNLLR-----LRGFCMTPTERL-LVYPFMVNGSVA 373
             + E+ M+   + HRN+       ++       ++L LV  F   GSV 
Sbjct: 66  EIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVT 115

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 13/94 (13%)

Query: 281 RELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKR-LKEERTQGGELQFQTEVEMI 339
           +  +     ++N  ++G G FG V++ +L +   VA+K+ L+++R +  ELQ    V+  
Sbjct: 33  KTGEQREIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNRELQIMRIVK-- 90

Query: 340 SMAVHRNLLRLRGFCMTPTERL------LVYPFM 367
               H N++ L+ F  +  ++       LV  ++
Sbjct: 91  ----HPNVVDLKAFFYSNGDKKDEVFLNLVLEYV 120

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 13/95 (13%)

Query: 286 ATDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQF-QT---EV---E 337
           AT  +     +G G +G VYK R    G  VA+K ++     GG      +   EV    
Sbjct: 7   ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLR 66

Query: 338 MISMAVHRNLLRLRGFCMTPTERL-----LVYPFM 367
            +    H N++RL   C T          LV+  +
Sbjct: 67  RLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHV 101

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 5/114 (4%)

Query: 251 RKRKPEDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGR-L 309
           +   P+ + +D   E+  + ++ Q        +    D +     LG G FG V++    
Sbjct: 17  KYDGPKINDYDKFYEDIWKKYVPQPVEVKQGSV---YDYYDILEELGSGAFGVVHRCVEK 73

Query: 310 TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV 363
             G +   K +            + E+ +++   H  L+ L        E +L+
Sbjct: 74  ATGRVFVAKFINTPYPLDKY-TVKNEISIMNQLHHPKLINLHDAFEDKYEMVLI 126

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHR 345
            + +     LG G FGKVYK +    G+L A K ++ +  +  E  +  E+E+++   H 
Sbjct: 18  NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELED-YIVEIEILATCDHP 76

Query: 346 NLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
            +++L G      +  ++  F   G+V + + 
Sbjct: 77  YIVKLLGAYYHDGKLWIMIEFCPGGAVDAIML 108

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVE-MISMA 342
            V   +F  +++LG G  G +    + D   VAVKR+  E           EV+ +    
Sbjct: 20  IVGKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFS----FADREVQLLRESD 75

Query: 343 VHRNLLRLRGFCMTPTERLLV 363
            H N++R          + + 
Sbjct: 76  EHPNVIRYFCTEKDRQFQYIA 96

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 47.4 bits (112), Expect = 5e-06
 Identities = 8/63 (12%), Positives = 18/63 (28%), Gaps = 3/63 (4%)

Query: 295 ILGRGGFGKVYKGR-LTDGSLVAVK--RLKEERTQGGELQFQTEVEMISMAVHRNLLRLR 351
            L  G    V+  R +      A+K   +  E ++    +        +  +  +    R
Sbjct: 69  PLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEAR 128

Query: 352 GFC 354
              
Sbjct: 129 DRR 131

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQT--EVEMISMAVHR 345
           + +     +G G +G VYK + + G +VA+KR++ +    G +      E+ ++    H 
Sbjct: 21  EKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEG-IPSTAIREISLLKELHHP 79

Query: 346 NLLRLRGFCMTPTERLLVYPFM 367
           N++ L     +     LV+ FM
Sbjct: 80  NIVSLIDVIHSERCLTLVFEFM 101

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLK-EERTQGGELQF-QTEVEMISMAVH 344
            NF     +GRG F +VY+   L DG  VA+K+++  +            E++++    H
Sbjct: 32  ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNH 91

Query: 345 RNLLRLRGFCMT 356
            N+++     + 
Sbjct: 92  PNVIKYYASFIE 103

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 46.8 bits (112), Expect = 6e-06
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVK-----RLKEERTQGGELQFQTEVEMIS 340
            D++     LG G F  V K R    G   A K     RL   R      + + EV ++ 
Sbjct: 4   EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILR 63

Query: 341 MAVHRNLLRLRGFCMTPTERLLV 363
              H N++ L       T+ +L+
Sbjct: 64  EIRHPNIITLHDIFENKTDVVLI 86

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQF-QTEVEMISMAVHR 345
           + +     +G G FGK    +   DG    +K +   R    E +  + EV +++   H 
Sbjct: 24  EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHP 83

Query: 346 NLLRLRGFCMT 356
           N+++ R     
Sbjct: 84  NIVQYRESFEE 94

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 46.1 bits (110), Expect = 9e-06
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 12/88 (13%)

Query: 287 TDNFSNRNILGRGGFGKVYKG--RLTDGSLVAVK--------RLKEERTQGGELQFQTEV 336
            +N+  + ILGRG    V +   + T     AVK            E  Q        EV
Sbjct: 16  YENYEPKEILGRGVSSVVRRCIHKPT-CKEYAVKIIDVTGGGSFSAEEVQELREATLKEV 74

Query: 337 E-MISMAVHRNLLRLRGFCMTPTERLLV 363
           + +  ++ H N+++L+    T T   LV
Sbjct: 75  DILRKVSGHPNIIQLKDTYETNTFFFLV 102

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 46.4 bits (109), Expect = 9e-06
 Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 12/112 (10%)

Query: 273 GQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQF 332
            Q          + T+       +G G FG+V++    D + VA+K +  E         
Sbjct: 6   SQKGPVPFSHC-LPTEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSH 63

Query: 333 QTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSG 384
           Q   E I       ++  +   +   E        +       L  +  V G
Sbjct: 64  QKTFEEI----LPEIIISKELSLLSGEVCNRTEGFIG------LNSVHCVQG 105

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVK-----RLKEERTQGGELQFQTEVEMIS 340
            D +     LG G F  V K R  + G   A K     + +  R      + + EV ++ 
Sbjct: 11  EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILR 70

Query: 341 MAVHRNLLRLRGFCMTPTERLLV 363
             +H N++ L       T+ +L+
Sbjct: 71  QVLHPNIITLHDVYENRTDVVLI 93

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 281 RELQVATDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRL---KEERTQGGELQFQTEV 336
           + +++       R +L  GGF  VY+ + +  G   A+KRL   +EE+ +        EV
Sbjct: 21  QTVELGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNR----AIIQEV 76

Query: 337 E-MISMAVHRNLLRLRGFCMTPTERL 361
             M  ++ H N+++         E  
Sbjct: 77  CFMKKLSGHPNIVQFCSAASIGKEES 102

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVK-----RLKEERTQGGELQFQTEVEMIS 340
            D +     LG G F  V K R  + G   A K     R K  R        + EV ++ 
Sbjct: 10  DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILK 69

Query: 341 MAVHRNLLRLRGFCMTPTERLLV 363
              H N++ L       T+ +L+
Sbjct: 70  EIQHPNVITLHEVYENKTDVILI 92

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 5/90 (5%)

Query: 279 SLRELQVATDNFSNR----NILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQ 333
           S RE         +       LG G FG V+     + G    +K + ++R+Q    Q +
Sbjct: 9   SGRENLYFQGTIDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIE 68

Query: 334 TEVEMISMAVHRNLLRLRGFCMTPTERLLV 363
            E+E++    H N++++           +V
Sbjct: 69  AEIEVLKSLDHPNIIKIFEVFEDYHNMYIV 98

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 27/89 (30%), Positives = 50/89 (56%), Gaps = 14/89 (15%)

Query: 287 TDNFSNRNILGRGGFGKVYKGRLTD-GSLVAVKR-LKEERTQGGELQFQTEVEMISMAVH 344
             ++++  ++G G FG VY+ +L D G LVA+K+ L+++R +  ELQ   +++      H
Sbjct: 53  EVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLD------H 106

Query: 345 RNLLRLRGFCMTPTERL------LVYPFM 367
            N++RLR F  +  E+       LV  ++
Sbjct: 107 CNIVRLRYFFYSSGEKKDEVYLNLVLDYV 135

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQF-QTEVEMISMAVHR 345
           +++     +G G +G+  K R  +DG ++  K L        E Q   +EV ++    H 
Sbjct: 6   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 65

Query: 346 NLLRLR 351
           N++R  
Sbjct: 66  NIVRYY 71

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 91  QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPT-TLGKLSKLRFLRLN 149
           +LT L  L L  N I          LT L  L L+ N L   +P     KL++L+ L L+
Sbjct: 50  KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELALD 108

Query: 150 NNSLMGEIPR-SLTNVNSLQVLDLSNN 175
            N L   +P      + SLQ + L  N
Sbjct: 109 TNQLKS-VPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 11/94 (11%)

Query: 117 TNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPR---SLTNVNSLQVLDLS 173
           ++   L+L  N L         KL++L  L L+ N +          LT    L +L L 
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTK---LTILYLH 84

Query: 174 NNKLTGDIPTNGSF---SLFTPISFANNQLNNPP 204
            NKL   +P NG F   +    ++   NQL + P
Sbjct: 85  ENKLQS-LP-NGVFDKLTQLKELALDTNQLKSVP 116

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHR 345
                +   +G G  G V   R    G  VAVK +   + Q  EL    EV ++    H 
Sbjct: 44  RLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRREL-LFNEVVIMRDYQHF 102

Query: 346 NLLRLRGFCMTPTERLLVYPFMVNGSVA 373
           N++ +    +   E  ++  F+  G++ 
Sbjct: 103 NVVEMYKSYLVGEELWVLMEFLQGGALT 130

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 6/83 (7%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVK-----RLKEERTQGGELQFQTEVEMIS 340
            D +     LG G F  V K R  + G   A K     + +  R      + + EV ++ 
Sbjct: 11  EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILR 70

Query: 341 MAVHRNLLRLRGFCMTPTERLLV 363
             +H N++ L       T+ +L+
Sbjct: 71  QVLHHNVITLHDVYENRTDVVLI 93

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQT--EVEMISMAVH 344
           + + N  ++G G +G V K R    G +VA+K+  E       ++     E++++    H
Sbjct: 25  EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKM-VKKIAMREIKLLKQLRH 83

Query: 345 RNLLRLRGFCMTPTERLLVYPFM 367
            NL+ L   C       LV+ F+
Sbjct: 84  ENLVNLLEVCKKKKRWYLVFEFV 106

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 33/84 (39%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 93  TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNS 152
           T  Q L LY N I+   P     LT L  LDL  N L         KL++L  L LN+N 
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89

Query: 153 LMGEIPR-SLTNVNSLQVLDLSNN 175
           L   IPR +  N+ SL  + L NN
Sbjct: 90  LKS-IPRGAFDNLKSLTHIWLLNN 112

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 296 LGRGGFGKVYKGR-LTDGSLVAVK---RLKEERTQGGELQFQTEVEMISMAVHRNLLRL 350
           LG G +GKV +          AVK   + K  R   GE   + E++++    H+N+++L
Sbjct: 13  LGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQL 71

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 296 LGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 354
           +G G FG     R      LVAVK +  ER    +   Q E+       H N++R +   
Sbjct: 28  IGSGNFGVARLMRDKLTKELVAVKYI--ERGAAIDENVQREIINHRSLRHPNIVRFKEVI 85

Query: 355 MTPTERLLV 363
           +TPT   ++
Sbjct: 86  LTPTHLAII 94

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 24/124 (19%), Positives = 42/124 (33%), Gaps = 15/124 (12%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQL-----TNLQYLELYSNNISGKVPEELGN-LTNLVSLD 123
           S+ +++L    ++    + +  +       L  + L S  +       L         L 
Sbjct: 73  SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG 132

Query: 124 LYLNNLNGPIPTTLGKL-----SKLRFLRLNNNSLMGE----IPRSLTNVNSLQVLDLSN 174
           L LN+L       L  L      ++  LRL+NN L       +   L    S+  L L +
Sbjct: 133 LQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH 192

Query: 175 NKLT 178
             L 
Sbjct: 193 TGLG 196

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 24/126 (19%), Positives = 46/126 (36%), Gaps = 17/126 (13%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQL-----TNLQYLELYSNNISGK----VPEELGNLTNLV 120
              ++ L   +L  +    L  L       +  L L +N ++      + E L   T++ 
Sbjct: 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVT 186

Query: 121 SLDLYLNNLNGP----IPTTLGKLSKLRFLRLNNNSLMGE----IPRSLTNVNSLQVLDL 172
            L L    L       +   L +  +L+ L +  N         + R+     SL++L L
Sbjct: 187 HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHL 246

Query: 173 SNNKLT 178
             N+L+
Sbjct: 247 YFNELS 252

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQT--EVEMISMAVHR 345
           + +     +G G +G VYK +   G   A+K+++ E+   G +   T  E+ ++    H 
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEG-IPSTTIREISILKELKHS 60

Query: 346 NLLRLRGFCMTPTERLLVYPFM 367
           N+++L     T    +LV+  +
Sbjct: 61  NIVKLYDVIHTKKRLVLVFEHL 82

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQ-FQTEVEMISMAVH 344
           ++ +     LG G +G+V   R        A+K +++             EV ++ +  H
Sbjct: 36  SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDH 95

Query: 345 RNLLRLRGFC 354
            N+++L  F 
Sbjct: 96  PNIMKLYDFF 105

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 296 LGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 354
           LG G +G+V           VAVK +  +R        + E+ +  M  H N+++  G  
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 74

Query: 355 MTPTERLLV 363
                + L 
Sbjct: 75  REGNIQYLF 83

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 8/83 (9%)

Query: 296 LGRGGFGKVYKGR-LTDGSLVAVKRLKEER-------TQGGELQFQTEVEMISMAVHRNL 347
           LG G FG V+          V VK +K+E+             +   E+ ++S   H N+
Sbjct: 32  LGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANI 91

Query: 348 LRLRGFCMTPTERLLVYPFMVNG 370
           +++           LV     +G
Sbjct: 92  IKVLDIFENQGFFQLVMEKHGSG 114

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHR 345
              ++    +G+G  G VY    +  G  VA++++  ++    EL    E+ ++    + 
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKEL-IINEILVMRENKNP 77

Query: 346 NLLRLRGFCMTPTERLLVYPFMVNGSVA 373
           N++      +   E  +V  ++  GS+ 
Sbjct: 78  NIVNYLDSYLVGDELWVVMEYLAGGSLT 105

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 2/84 (2%)

Query: 93  TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNS 152
           T+ Q L L +N I+   P    +L NL  L    N L         KL++L  L LN+N 
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92

Query: 153 LMGEIPR-SLTNVNSLQVLDLSNN 175
           L   IPR +  N+ SL  + L NN
Sbjct: 93  LKS-IPRGAFDNLKSLTHIYLYNN 115

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 10/80 (12%)

Query: 287 TDNFSNRNILGRGGFGKVYKG--RLTDGSLVAVK-------RLKEERTQGGELQFQTEVE 337
            D +     LG G  G+V     R T    VA++        +   R     L  +TE+E
Sbjct: 134 RDEYIMSKTLGSGACGEVKLAFERKT-CKKVAIRIISKRKFAIGSAREADPALNVETEIE 192

Query: 338 MISMAVHRNLLRLRGFCMTP 357
           ++    H  +++++ F    
Sbjct: 193 ILKKLNHPCIIKIKNFFDAE 212

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 12/90 (13%)

Query: 287 TDNFSNRNILGRGGFGKVYKGRLTD-GSLVAVKR-LKEERTQGGELQFQTEVEMISMAVH 344
            D F    + G+G FG V  G+    G  VA+K+ +++ R +  ELQ    ++ +++  H
Sbjct: 22  MDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQ---IMQDLAVLHH 78

Query: 345 RNLLRLRGFCMTPTER-------LLVYPFM 367
            N+++L+ +  T  ER        +V  ++
Sbjct: 79  PNIVQLQSYFYTLGERDRRDIYLNVVMEYV 108

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 4/83 (4%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQT--EVEMISMAVH 344
           +NF     +G G +G VYK R    G +VA+K+++ +    G +      E+ ++    H
Sbjct: 3   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEG-VPSTAIREISLLKELNH 61

Query: 345 RNLLRLRGFCMTPTERLLVYPFM 367
            N+++L     T  +  LV+ F+
Sbjct: 62  PNIVKLLDVIHTENKLYLVFEFL 84

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 5/80 (6%)

Query: 296 LGRGGFGKVYKGR-LTDGSLVAVK----RLKEERTQGGELQFQTEVEMISMAVHRNLLRL 350
           +G+G +G V         ++ A+K        +       + +TEV ++    H N+ RL
Sbjct: 34  IGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARL 93

Query: 351 RGFCMTPTERLLVYPFMVNG 370
                      LV      G
Sbjct: 94  YEVYEDEQYICLVMELCHGG 113

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRN 346
           + +   + LG G +  VYKG+     +LVA+K ++ E  +G       EV ++    H N
Sbjct: 2   ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHAN 61

Query: 347 LLRLRGFCMTPTERLLVYPFM 367
           ++ L     T     LV+ ++
Sbjct: 62  IVTLHDIIHTEKSLTLVFEYL 82

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQT---EVEMISMAV 343
           + +     +G G +G V+K R    G +VA+K+  E          +    E+ M+    
Sbjct: 3   EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIK--KIALREIRMLKQLK 60

Query: 344 HRNLLRLRGFCMTPTERLLVYPFM 367
           H NL+ L           LV+ + 
Sbjct: 61  HPNLVNLLEVFRRKRRLHLVFEYC 84

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 1/69 (1%)

Query: 296 LGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 354
           LG G +G+V           VAVK +  +R        + E+ +  M  H N+++  G  
Sbjct: 15  LGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHR 74

Query: 355 MTPTERLLV 363
                + L 
Sbjct: 75  REGNIQYLF 83

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQ-FQTEVEMISMAVH 344
            + ++   +LG+G FG+V K +        AVK + +   +  +      EVE++    H
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDH 80

Query: 345 RNLLRLRGFC 354
            N+++L    
Sbjct: 81  PNIMKLFEIL 90

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 8/84 (9%)

Query: 287 TDNFSNR----NILGRGGFGKVYKG--RLTDGSLVAVKRLKEERTQGGELQ-FQTEVEMI 339
           +  FS+       LG+G F  V +   + T G   A K +  ++    + Q  + E  + 
Sbjct: 1   STKFSDNYDVKEELGKGAFSVVRRCVHKTT-GLEFAAKIINTKKLSARDFQKLEREARIC 59

Query: 340 SMAVHRNLLRLRGFCMTPTERLLV 363
               H N++RL       +   LV
Sbjct: 60  RKLQHPNIVRLHDSIQEESFHYLV 83

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQT--EVEMISMAVH 344
             +     +G G +G V+K +      +VA+KR++ +    G +      E+ ++    H
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEG-VPSSALREICLLKELKH 60

Query: 345 RNLLRLRGFCMTPTERLLVYPFM 367
           +N++RL     +  +  LV+ F 
Sbjct: 61  KNIVRLHDVLHSDKKLTLVFEFC 83

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQ-FQTEVEMISMAVH 344
            + ++   +LG+G FG+V K +        AVK + +   +  +      EVE++    H
Sbjct: 21  AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDH 80

Query: 345 RNLLRLRGFCMTPTERLLV 363
            N+++L       +   +V
Sbjct: 81  PNIMKLFEILEDSSSFYIV 99

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLK-EERTQGGELQFQTEVEMISMAVH 344
            + F     LG G +G VYK      G +VA+K++  E   Q    +   E+ ++     
Sbjct: 28  EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVESDLQ----EIIKEISIMQQCDS 83

Query: 345 RNLLRLRGFCMTPTERLLVYPFMVNGSVA 373
            ++++  G     T+  +V  +   GSV+
Sbjct: 84  PHVVKYYGSYFKNTDLWIVMEYCGAGSVS 112

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 10/107 (9%)

Query: 268 PEVHLGQLKRFSLRELQVAT--DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEER 324
            E         S+     AT  D +     LG G +G+VYK         VA+KR++ E 
Sbjct: 12  LEAQTQGPGSMSVSAAPSATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEH 71

Query: 325 TQGGELQF-QT---EVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM 367
            + G      T   EV ++    HRN++ L+          L++ + 
Sbjct: 72  EEEG---VPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIFEYA 115

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 2/78 (2%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHR 345
              F    +LG G F +V+  +    G L A+K +K +     +   + E+ ++    H 
Sbjct: 8   RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIK-KSPAFRDSSLENEIAVLKKIKHE 66

Query: 346 NLLRLRGFCMTPTERLLV 363
           N++ L     + T   LV
Sbjct: 67  NIVTLEDIYESTTHYYLV 84

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQ-FQTEVEMISMAVH 344
           T+ +     LG+G F  V +   +  G   A   +  ++    + Q  + E  +  +  H
Sbjct: 10  TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKH 69

Query: 345 RNLLRLRGFCMTPTERLLV 363
            N++RL           L+
Sbjct: 70  PNIVRLHDSISEEGHHYLI 88

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 12/89 (13%)

Query: 286 ATDNFS---------NRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTE 335
           +TD+FS           ++LG G   +V     L      AVK ++++       +   E
Sbjct: 2   STDSFSGRFEDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRS-RVFRE 60

Query: 336 VE-MISMAVHRNLLRLRGFCMTPTERLLV 363
           VE +     HRN+L L  F        LV
Sbjct: 61  VEMLYQCQGHRNVLELIEFFEEEDRFYLV 89

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 1/83 (1%)

Query: 286 ATDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVH 344
           ++  F     LG G +  VYKG   T G  VA+K +K +  +G       E+ ++    H
Sbjct: 3   SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKH 62

Query: 345 RNLLRLRGFCMTPTERLLVYPFM 367
            N++RL     T  +  LV+ FM
Sbjct: 63  ENIVRLYDVIHTENKLTLVFEFM 85

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 8/117 (6%)

Query: 260 FDVPAEEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTD-GSLVAVK 318
           F    E D      Q K   L    +  ++FS   I+GRGGFG+VY  R  D G + A+K
Sbjct: 162 FQKFIESDKFTRFCQWKNVELNI-HLTMNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMK 220

Query: 319 RLKEER--TQGGELQFQTE---VEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNG 370
            L ++R   + GE     E   + ++S      ++ +     TP +   +   M NG
Sbjct: 221 CLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLM-NG 276

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 287 TDNFSNRNILGRGGFGKVYKG--RLTDGSLVAVK-------RLKEERTQGGELQFQTEVE 337
            D +     LG G  G+V     R T    VA+K        +   R     L  +TE+E
Sbjct: 9   RDEYIMSKTLGSGACGEVKLAFERKT-CKKVAIKIISKRKFAIGSAREADPALNVETEIE 67

Query: 338 MISMAVHRNLLRLRGF 353
           ++    H  +++++ F
Sbjct: 68  ILKKLNHPCIIKIKNF 83

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQF-QT---EVEMISMA 342
             +   + LG G F  VYK R      +VA+K++K       +    +T   E++++   
Sbjct: 10  KRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQEL 69

Query: 343 VHRNLLRLRGFCMTPTERLLVYPFM 367
            H N++ L       +   LV+ FM
Sbjct: 70  SHPNIIGLLDAFGHKSNISLVFDFM 94

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 272 LGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGEL 330
           +G+   F +      +DN+  +  LG+G F  V +    T G   A K +  ++    + 
Sbjct: 13  MGRGSEFMMNASTKFSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDF 72

Query: 331 Q-FQTEVEMISMAVHRNLLRLRGFCMTPTERLLV 363
           Q  + E  +     H N++RL       +   LV
Sbjct: 73  QKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 106

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGE--LQFQTEVEMISMAV 343
           +D +  + +LG+G FG+V   +    G   AVK + + + +          EV+++    
Sbjct: 25  SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLD 84

Query: 344 HRNLLRLRGFCMTPTERLLV 363
           H N+++L  F        LV
Sbjct: 85  HPNIMKLYEFFEDKGYFYLV 104

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 296 LGRGGFGKVYKGR--LTDGSLVAVKRL-KEERTQGGELQFQTEVEMISMAVHRNLLRLRG 352
           +G+G F KV   R  LT G  VA+K + K +       +   EV ++ +  H N+++L  
Sbjct: 23  IGKGNFAKVKLARHILT-GREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFE 81

Query: 353 FCMTPTERLLV 363
              T     L+
Sbjct: 82  VIETEKTLYLI 92

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 3/78 (3%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHR 345
            + +     LGRG FG V++    +       K +K       ++  + E+ ++++A HR
Sbjct: 4   YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVK--VKGTDQVLVKKEISILNIARHR 61

Query: 346 NLLRLRGFCMTPTERLLV 363
           N+L L     +  E +++
Sbjct: 62  NILHLHESFESMEELVMI 79

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLTD-GSLVAVKRLKEER--TQGGELQFQTEVEMIS 340
            V  + F    +LG+GGFG+V   ++   G + A K+L+++R   + GE     E +++ 
Sbjct: 180 PVTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILE 239

Query: 341 MAVHRNLLRLRGFCMTPTERLLVYPFMVNG 370
               R ++ L     T     LV   M NG
Sbjct: 240 KVNSRFVVSLAYAYETKDALCLVLTLM-NG 268

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 23/97 (23%)

Query: 288 DNFSNRNILGRGGFGKVYKGR--LTDGSLVAVKRLKEERTQGG-------E---LQFQTE 335
             +     +G G +GKV+K R     G  VA+KR++ +  + G       E   L+    
Sbjct: 11  QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLR---- 66

Query: 336 VEMISMAVHRNLLRLRGFCMTPTERL-----LVYPFM 367
              +    H N++RL   C            LV+  +
Sbjct: 67  --HLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHV 101

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 296 LGRGGFGKVYKGR-LTDGSLVAVKRL-KEERTQGGELQFQTEVE-MISMAVHRNLLRLRG 352
           LGRG F  V +    + G   A K L K  R Q    +   E+  +        ++ L  
Sbjct: 37  LGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHE 96

Query: 353 FCMTPTERLLV 363
                +E +L+
Sbjct: 97  VYENTSEIILI 107

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 16/93 (17%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQF-QT---EVEMISMA 342
             +     +G+G FG+V+K R    G  VA+K++  E  + G   F  T   E++++ + 
Sbjct: 17  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEG---FPITALREIKILQLL 73

Query: 343 VHRNLLRLRGFCMTPTERL--------LVYPFM 367
            H N++ L   C T             LV+ F 
Sbjct: 74  KHENVVNLIEICRTKASPYNRCKGSIYLVFDFC 106

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 281 RELQVATDNFSNR----NILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTE 335
           ++L   +  F++       +G G +    +          AVK + + +    E     E
Sbjct: 11  QQLHRNSIQFTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRDPTE-----E 65

Query: 336 VEMISMAV-HRNLLRLRGFCMTPTERLLV 363
           +E++     H N++ L+          +V
Sbjct: 66  IEILLRYGQHPNIITLKDVYDDGKYVYVV 94

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 6/82 (7%)

Query: 287 TDNFSNR----NILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISM 341
             + +      N +GRG +G+V            A K++ +   +  + +F+ E+E++  
Sbjct: 4   KGDINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVD-RFKQEIEIMKS 62

Query: 342 AVHRNLLRLRGFCMTPTERLLV 363
             H N++RL       T+  LV
Sbjct: 63  LDHPNIIRLYETFEDNTDIYLV 84

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 19/116 (16%), Positives = 47/116 (40%), Gaps = 3/116 (2%)

Query: 273 GQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQ 331
           G+LK    +      ++  +   +GRG +G V K      G ++AVKR++    +  + Q
Sbjct: 7   GKLKISPEQHWDFTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQ 66

Query: 332 FQTEVEMI-SMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFP 386
              +++++   +    +++  G      +  +    M + S     + ++ V    
Sbjct: 67  LLMDLDVVMRSSDCPYIVQFYGALFREGDCWICMELM-STSFDKFYKYVYSVLDDV 121

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 1/54 (1%)

Query: 295 ILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           +LG+       +      G    V               Q + E++ + + R +
Sbjct: 80  VLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGI 133

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLTD-GSLVAVKRLKEER--TQGGELQFQTEVEMIS 340
            +  D F +  +LGRGGFG+V+  ++   G L A K+L ++R   + G      E ++++
Sbjct: 181 PMGEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILA 240

Query: 341 MAVHRNLLRLRGFCMTPTERL-LVYPFMVNG 370
               R ++ L  +       L LV   M NG
Sbjct: 241 KVHSRFIVSLA-YAFETKTDLCLVMTIM-NG 269

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 296 LGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQT--EVEMISMAVHRNLLRLRG 352
           LG G FGKV           VA+K +  +  +  ++  +   E+  + +  H ++++L  
Sbjct: 17  LGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYD 76

Query: 353 FCMTPTERLLV 363
              TPT+ ++V
Sbjct: 77  VITTPTDIVMV 87

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 7/54 (12%), Positives = 16/54 (29%), Gaps = 1/54 (1%)

Query: 295 ILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           +LG+       +      G    V               Q + E++ + + R +
Sbjct: 85  VLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGI 138

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 296 LGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGEL--QFQTEVEMISMAVHRNLLRLRG 352
           LG G FGKV  G     G  VAVK L  ++ +  ++  + + E++ + +  H ++++L  
Sbjct: 19  LGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQ 78

Query: 353 FCMTPTERLLV 363
              TPT+  +V
Sbjct: 79  VISTPTDFFMV 89

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 8/77 (10%)

Query: 296 LGRGGFGKVYKGR---LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG 352
           +GRG +G VYK +     D    A+K+++     G  +    E+ ++    H N++ L+ 
Sbjct: 29  VGRGTYGHVYKAKRKDGKDDKDYALKQIEGT---GISMSACREIALLRELKHPNVISLQK 85

Query: 353 FCMTPTERL--LVYPFM 367
             ++  +R   L++ + 
Sbjct: 86  VFLSHADRKVWLLFDYA 102

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 41.0 bits (96), Expect = 6e-04
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 296 LGRGGFGKVYKGR--LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 353
           +  GG G +Y       +G  V +K L        +     E + ++  VH +++++  F
Sbjct: 88  IAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNF 147

Query: 354 CMTPTERLLVYPFMV 368
                       ++V
Sbjct: 148 VEHTDRHGDPVGYIV 162

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 13/81 (16%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLK------------EERTQGGELQFQ 333
            +++     LG G +G+V   +     S  A+K +K             +  +    +  
Sbjct: 35  GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIY 94

Query: 334 TEVEMISMAVHRNLLRLRGFC 354
            E+ ++    H N+++L    
Sbjct: 95  NEISLLKSLDHPNIIKLFDVF 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	419
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.93
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.93
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.93
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.92
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.91
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.91
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.9
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.9
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.9
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.9
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.9
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.89
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.89
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.89
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.89
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.88
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.88
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.85
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.84
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.83
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.82
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.82
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.82
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.81
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.8
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.8
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.8
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.8
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.8
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.8
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.79
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.79
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.79
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.79
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.79
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.79
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.79
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.79
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.79
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.79
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.79
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.78
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.78
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.78
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.78
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.78
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.78
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.78
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.78
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.78
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.78
3uqc_A	286	Probable conserved transmembrane protein; structur	99.78
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.78
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.77
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.77
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.77
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.77
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.77
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.77
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.77
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.77
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.77
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.77
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.77
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.77
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.77
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.77
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.77
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.77
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.77
3niz_A	311	Rhodanese family protein; structural genomics, str	99.76
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.76
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.76
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.76
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.76
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.76
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.76
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.76
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.76
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.76
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.76
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.76
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.76
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.76
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.76
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.76
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.76
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.76
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.76
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.76
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.76
3bhy_A	283	Death-associated protein kinase 3; death associate	99.76
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.76
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.76
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.76
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.76
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.76
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.75
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.75
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.75
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.75
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.75
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.75
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.75
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.75
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.75
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.75
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.75
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.75
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.75
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.75
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.75
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.75
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.75
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.75
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.75
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.75
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.75
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.74
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.74
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.74
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.74
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.74
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.74
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.74
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.74
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.74
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.74
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.74
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.74
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.74
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.74
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.74
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.74
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.74
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.74
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.74
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.74
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.74
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.74
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.74
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.74
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.74
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.73
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.73
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.73
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.73
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.73
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.73
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.73
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.73
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.73
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.73
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.73
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.73
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.73
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.73
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.73
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.73
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.73
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.73
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.73
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.73
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.73
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.73
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.72
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.72
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.72
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.72
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.72
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.72
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.72
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.72
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.72
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.72
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.72
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.72
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.71
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.71
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.71
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.71
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.71
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.71
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.71
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.71
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.71
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.71
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.71
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.71
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.71
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.71
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.71
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.71
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.7
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.7
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.7
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.7
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.7
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.7
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.7
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.7
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.7
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.7
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.7
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.7
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.7
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.7
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.69
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.69
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.69
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.69
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.69
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.69
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.69
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.69
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.69
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.69
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.69
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.69
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.69
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.69
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.69
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.69
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.68
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.68
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.68
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.68
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.68
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.68
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.68
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.68
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.68
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.67
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.67
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.67
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.67
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.67
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.66
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.66
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.66
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.66
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.66
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.66
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.66
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.66
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.66
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.66
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.66
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.66
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.65
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.65
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.65
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.65
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.65
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.65
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.65
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.65
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.65
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.64
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.64
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.64
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.64
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.63
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.63
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.63
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.63
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.63
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.63
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.63
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.63
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.63
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.63
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.63
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.62
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.62
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.62
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.62
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.62
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.62
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.61
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.61
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.61
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.61
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.6
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.6
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.6
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.6
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.59
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.59
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.59
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.59
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.59
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.58
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.58
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.58
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.58
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.58
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.57
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.57
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.57
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.56
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.56
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.56
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.56
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.56
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.56
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.56
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.55
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.55
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.55
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.55
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.55
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.54
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.54
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.54
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.54
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.53
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.53
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.53
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.53
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.52
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.51
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.51
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.51
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.51
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.5
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.49
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.49
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.48
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.48
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.46
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.46
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.45
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.42
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.42
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.42
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.41
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.41
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.4
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.4
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.38
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.36
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.36
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.35
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.33
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.31
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.31
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.31
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.31
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.28
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.24
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.22
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.97
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.89
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.89
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.87
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.84
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.67
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.65
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.64
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.42
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.39
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.39
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.26
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.18
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.16
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.12
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.03
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.79
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	97.77
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	97.76
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.64
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.59
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.57
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.5
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.4
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.21
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.13
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	96.73
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.26
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	96.02
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	95.74
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	95.73
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	95.68
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.59
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.58
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	95.41
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.34
3ats_A	357	Putative uncharacterized protein; hypothetical pro	95.25
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	95.17
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	95.11
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.05
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.95
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	94.83
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	94.75
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.58
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	91.11
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	88.34
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	86.34
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	85.8
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	85.18
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	82.19
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	80.2
2k9y_A	41	Ephrin type-A receptor 2; receptor tyrosine kinase	80.02

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=2.7e-28  Score=231.66  Aligned_cols=177  Identities=32%  Similarity=0.613  Sum_probs=162.7

Q ss_pred             cCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC--cceeEeCCC---CCEEEEEcCCCCccc--cchhhhhCCCCCC
Q 014778           24 VASNAEGDALNALKTNLADPNNVLQSWDATLVNPCT--WFHVTCNSE---NSVTRVDLGNANLSG--QLVSQLGQLTNLQ   96 (419)
Q Consensus        24 ~~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c~--w~~v~c~~~---~~~~~l~L~~~~l~g--~~~~~~~~l~~L~   96 (419)
                      .|.+.|.+||++||+++.+|. .+.+|+.+ .+||.  |.||+|+..   ++|+.|+|++|+++|  .+|+.|+++++|+
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~-~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~   79 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN   79 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTT-SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-cccCCCCC-CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCC
Confidence            467889999999999998886 78899764 68998  999999854   789999999999999  9999999999999


Q ss_pred             EEEccc-CcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccC
Q 014778           97 YLELYS-NNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNN  175 (419)
Q Consensus        97 ~L~L~~-N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N  175 (419)
                      +|+|++ |.+.+.+|..|+.+++|++|+|++|++++.+|..++++++|++|+|++|++++.+|..+..+++|++|++++|
T Consensus        80 ~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  159 (313)
T 1ogq_A           80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             eeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC
Confidence            999995 9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC-CCCcc-ccccccccCCCCCC
Q 014778          176 KLTGDIPT-NGSFS-LFTPISFANNQLNN  202 (419)
Q Consensus       176 ~l~g~~p~-~~~~~-~~~~~~~~~n~~~~  202 (419)
                      +++|.+|. ...+. .++.+++++|.+.+
T Consensus       160 ~l~~~~p~~l~~l~~~L~~L~L~~N~l~~  188 (313)
T 1ogq_A          160 RISGAIPDSYGSFSKLFTSMTISRNRLTG  188 (313)
T ss_dssp             CCEEECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred             cccCcCCHHHhhhhhcCcEEECcCCeeec
Confidence            99998884 45555 78889999998764

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.93  E-value=3e-26  Score=216.23  Aligned_cols=128  Identities=20%  Similarity=0.262  Sum_probs=107.9

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      ++...+.||+|+||+||+|++.      +++.||||+++........++|.+|+.+|++++|||||+++|+|.+++..+|
T Consensus        27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l  106 (308)
T 4gt4_A           27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM  106 (308)
T ss_dssp             GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             HCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEE
Confidence            3445678999999999999973      4678999999765555556789999999999999999999999999999999


Q ss_pred             EeccCCCCChhhhhcCCccc---------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIV---------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~---------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||||++|||.++|+.....         ......++|.+++.++.|||+||+|||+.   +||||
T Consensus       107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHR  169 (308)
T 4gt4_A          107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHK  169 (308)
T ss_dssp             EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCC
Confidence            99999999999999754311         11123589999999999999999999999   99998

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.93  E-value=3.1e-26  Score=215.20  Aligned_cols=128  Identities=23%  Similarity=0.413  Sum_probs=106.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCcee
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  361 (419)
                      ++|...+.||+|+||+||+|++.      +++.||||+++.. .....++|.+|+++|++++|||||+++|+|.+++..+
T Consensus        13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~-~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~   91 (299)
T 4asz_A           13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDA-SDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI   91 (299)
T ss_dssp             GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCC-ChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEE
Confidence            46677789999999999999863      4778999999643 2334568999999999999999999999999999999


Q ss_pred             EEeccCCCCChhhhhcCCcc------ccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFI------VSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~------~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||||++|||.++|+....      .......++|.+++.++.|||+||+|||++   +||||
T Consensus        92 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHR  152 (299)
T 4asz_A           92 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHR  152 (299)
T ss_dssp             EEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            99999999999999986431      112334689999999999999999999998   99998

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.93  E-value=8e-26  Score=215.24  Aligned_cols=128  Identities=26%  Similarity=0.399  Sum_probs=108.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCcee
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  361 (419)
                      ++|...+.||+|+||+||+|+++      +++.||||+++.. .....++|.+|+++|++++|||||+++|+|.+++..+
T Consensus        41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~-~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~  119 (329)
T 4aoj_A           41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEA-SESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLL  119 (329)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCC-SHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred             HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcC-CHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            45666788999999999999864      4789999999643 2334568999999999999999999999999999999


Q ss_pred             EEeccCCCCChhhhhcCCccc--------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIV--------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~--------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||||++|+|.++|+.....        ......++|.+++.++.|||+||+|||+.   +||||
T Consensus       120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHR  182 (329)
T 4aoj_A          120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHR  182 (329)
T ss_dssp             EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---Ceecc
Confidence            999999999999999865321        11223589999999999999999999998   99998

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.93  E-value=8.8e-26  Score=239.57  Aligned_cols=178  Identities=29%  Similarity=0.385  Sum_probs=130.9

Q ss_pred             hhhccCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcceeEeCCCCCEEEEEcCCCCcccc---chh---------
Q 014778           20 LLLRVASNAEGDALNALKTNLADPNNVLQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANLSGQ---LVS---------   87 (419)
Q Consensus        20 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c~w~~v~c~~~~~~~~l~L~~~~l~g~---~~~---------   87 (419)
                      .+++.+.+.|.+||++||+++.||. .+.+|+. +.+||.|.||+|+ .++|+.|||++++++|.   +|+         
T Consensus         4 ~~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~-~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~   80 (768)
T 3rgz_A            4 ASPSQSLYREIHQLISFKDVLPDKN-LLPDWSS-NKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE   80 (768)
T ss_dssp             ----CCHHHHHHHHHHHHTTCSCTT-SSTTCCT-TSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred             CccccCCHHHHHHHHHHHhhCCCcc-cccCCCC-CCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence            3455567789999999999999998 8999984 4689999999998 78999999999999997   654         


Q ss_pred             --------------hhhCCCCCCEEEcccCcccccCCc--cccCCCcCcEEeccccccCCCCCccc-CCCCCCCEEEccc
Q 014778           88 --------------QLGQLTNLQYLELYSNNISGKVPE--ELGNLTNLVSLDLYLNNLNGPIPTTL-GKLSKLRFLRLNN  150 (419)
Q Consensus        88 --------------~~~~l~~L~~L~L~~N~l~g~~p~--~~~~l~~L~~L~ls~N~l~g~~p~~~-~~l~~L~~l~l~~  150 (419)
                                    .|+.+++|++|+|++|.++|.+|.  .++++++|++|||++|.+++.+|..+ .++++|++|||++
T Consensus        81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~  160 (768)
T 3rgz_A           81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA  160 (768)
T ss_dssp             EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred             ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence                          566778888888888888888887  88888888888888888888888766 6777888888888


Q ss_pred             CcCcccCCcc---CcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCC
Q 014778          151 NSLMGEIPRS---LTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       151 N~l~g~~p~~---l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~  201 (419)
                      |++++..|..   +.++++|++|++++|++++.+|. ..+.+++.+++++|.+.
T Consensus       161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~  213 (768)
T 3rgz_A          161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFS  213 (768)
T ss_dssp             SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCC
T ss_pred             CccCCcCChhhhhhccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcCC
Confidence            8777766654   45555555555555544444332 33344444444444433

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.92  E-value=2.5e-25  Score=236.47  Aligned_cols=172  Identities=20%  Similarity=0.256  Sum_probs=150.2

Q ss_pred             CChHHHHHHHHHHHhcCCCCCCCCCCCCCC----CCC--CCc------------ceeEeCCCCCEEEEEcCCCCccccch
Q 014778           25 ASNAEGDALNALKTNLADPNNVLQSWDATL----VNP--CTW------------FHVTCNSENSVTRVDLGNANLSGQLV   86 (419)
Q Consensus        25 ~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~----~~~--c~w------------~~v~c~~~~~~~~l~L~~~~l~g~~~   86 (419)
                      +...|..||++||+++.+|     +|+.+.    .+|  |.|            .||+|+..++|+.|+|++|+++|.+|
T Consensus       266 ~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip  340 (876)
T 4ecn_A          266 EYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP  340 (876)
T ss_dssp             HHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEEC
T ss_pred             cchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCc
Confidence            3456999999999999887     787554    467  999            99999988899999999999999999


Q ss_pred             hhhhCCCCCCEEEc-ccCccccc---------------------------------------------------------
Q 014778           87 SQLGQLTNLQYLEL-YSNNISGK---------------------------------------------------------  108 (419)
Q Consensus        87 ~~~~~l~~L~~L~L-~~N~l~g~---------------------------------------------------------  108 (419)
                      ++|++|++|++|+| ++|.++|.                                                         
T Consensus       341 ~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~  420 (876)
T 4ecn_A          341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD  420 (876)
T ss_dssp             GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred             hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence            99999999999999 88876655                                                         


Q ss_pred             -------------------CCccccCCCcCcEEeccccccCC-----------------CCCcccC--CCCCCCEEEccc
Q 014778          109 -------------------VPEELGNLTNLVSLDLYLNNLNG-----------------PIPTTLG--KLSKLRFLRLNN  150 (419)
Q Consensus       109 -------------------~p~~~~~l~~L~~L~ls~N~l~g-----------------~~p~~~~--~l~~L~~l~l~~  150 (419)
                                         +|.+|+++++|+.|+|++|+|+|                 .+|..++  ++++|+.|+|++
T Consensus       421 ~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~  500 (876)
T 4ecn_A          421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN  500 (876)
T ss_dssp             CCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred             cccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC
Confidence                               89999999999999999999998                 4999988  999999999999


Q ss_pred             CcCcccCCccCcCCCCCcEEEcccCc-CCC-CCCC-C-------CCccccccccccCCCCC
Q 014778          151 NSLMGEIPRSLTNVNSLQVLDLSNNK-LTG-DIPT-N-------GSFSLFTPISFANNQLN  201 (419)
Q Consensus       151 N~l~g~~p~~l~~l~~L~~l~l~~N~-l~g-~~p~-~-------~~~~~~~~~~~~~n~~~  201 (419)
                      |++.|.+|..++++++|+.|++++|+ ++| .+|. .       ..+.+++.+++++|.+.
T Consensus       501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            99999999999999999999999998 988 6663 1       22336777777777766

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.91  E-value=7.4e-25  Score=206.04  Aligned_cols=122  Identities=23%  Similarity=0.304  Sum_probs=104.7

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ..+++...+.||+|+||+||+|++.+  .||||+++... .....++|.+|+++|++++|||||+++|+|.+ +..+|||
T Consensus        34 ~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm  110 (307)
T 3omv_A           34 EASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT  110 (307)
T ss_dssp             CTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred             cHHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEE
Confidence            44567778899999999999999753  59999996432 22335679999999999999999999999865 5689999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||++|||.++|+....      .++|.+++.++.|||+||+|||++   +||||
T Consensus       111 Ey~~gGsL~~~l~~~~~------~l~~~~~~~i~~qia~gL~yLH~~---~IiHR  156 (307)
T 3omv_A          111 QWCEGSSLYKHLHVQET------KFQMFQLIDIARQTAQGMDYLHAK---NIIHR  156 (307)
T ss_dssp             ECCSSCBHHHHHHTSCC------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCS
T ss_pred             EcCCCCCHHHHHhhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---CccCC
Confidence            99999999999986542      589999999999999999999998   99998

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.91  E-value=2.7e-25  Score=230.94  Aligned_cols=174  Identities=23%  Similarity=0.282  Sum_probs=153.1

Q ss_pred             ChHHHHHHHHHHHhcCCCCCC--------CCCCCCCCCCCCCc---ceeEeCCCCCEEEEEcCCCCccccchhhhhCCCC
Q 014778           26 SNAEGDALNALKTNLADPNNV--------LQSWDATLVNPCTW---FHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTN   94 (419)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~~~~--------l~~w~~~~~~~c~w---~~v~c~~~~~~~~l~L~~~~l~g~~~~~~~~l~~   94 (419)
                      ...|..||.++++++.+++..        ..+|+.. .++|.|   .||+|+..++|+.|+|++++++|.+|++|++|++
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~~  106 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTE  106 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS-SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC-CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCcc
Confidence            346899999999999766432        2369865 789999   9999987789999999999999999999999999


Q ss_pred             CCEEEcccC-----------------------------------------------------------------------
Q 014778           95 LQYLELYSN-----------------------------------------------------------------------  103 (419)
Q Consensus        95 L~~L~L~~N-----------------------------------------------------------------------  103 (419)
                      |++|+|++|                                                                       
T Consensus       107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l  186 (636)
T 4eco_A          107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDT  186 (636)
T ss_dssp             CCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTT
T ss_pred             ceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhh
Confidence            999999998                                                                       


Q ss_pred             -------cccccCCccccCCCcCcEEeccccccCCC-----------------CCcccC--CCCCCCEEEcccCcCcccC
Q 014778          104 -------NISGKVPEELGNLTNLVSLDLYLNNLNGP-----------------IPTTLG--KLSKLRFLRLNNNSLMGEI  157 (419)
Q Consensus       104 -------~l~g~~p~~~~~l~~L~~L~ls~N~l~g~-----------------~p~~~~--~l~~L~~l~l~~N~l~g~~  157 (419)
                             .++| +|++++++++|++|+|++|+++|.                 +|..++  ++++|++|+|++|++.|.+
T Consensus       187 ~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~  265 (636)
T 4eco_A          187 QIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL  265 (636)
T ss_dssp             TTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC
T ss_pred             hhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccC
Confidence                   4456 899999999999999999999986                 999999  9999999999999999999


Q ss_pred             CccCcCCCCCcEEEcccCc-CCC-CCCC-CCCc------cccccccccCCCCC
Q 014778          158 PRSLTNVNSLQVLDLSNNK-LTG-DIPT-NGSF------SLFTPISFANNQLN  201 (419)
Q Consensus       158 p~~l~~l~~L~~l~l~~N~-l~g-~~p~-~~~~------~~~~~~~~~~n~~~  201 (419)
                      |..++++++|++|++++|+ ++| .+|. .+.+      ++++.+++++|.+.
T Consensus       266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             hHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            9999999999999999998 998 7774 2232      67788888888776

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.90  E-value=3.5e-24  Score=204.47  Aligned_cols=124  Identities=15%  Similarity=0.233  Sum_probs=102.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      ++|...+.||+|+||+||+|+. .+|+.||||+++... .....+.|.+|+++|++++|||||++++++.+++..|||||
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE  103 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD  103 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence            5688889999999999999996 479999999995432 22234679999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||++|+|.++|+....     ..+++.++..++.||+.||+|||++   +||||
T Consensus       104 y~~gg~L~~~i~~~~~-----~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHR  149 (350)
T 4b9d_A          104 YCEGGDLFKRINAQKG-----VLFQEDQILDWFVQICLALKHVHDR---KILHR  149 (350)
T ss_dssp             CCTTCBHHHHHHHTTT-----CCCCHHHHHHHHHHHHHHHHHHHHT---TCEET
T ss_pred             CCCCCcHHHHHHHcCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            9999999999975432     1468888999999999999999999   99998

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.90  E-value=3.5e-24  Score=201.14  Aligned_cols=122  Identities=16%  Similarity=0.211  Sum_probs=109.8

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...+.||+|+||+||+|+. .+|+.||||+++...  .....+.+.+|+++|++++|||||++++++.+++..|+||
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm  111 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL  111 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            4688889999999999999996 479999999996432  2334568999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.++++...       .+++.++..++.||+.||+|||++   +||||
T Consensus       112 Ey~~gG~L~~~i~~~~-------~l~e~~~~~~~~qi~~al~ylH~~---~IiHR  156 (311)
T 4aw0_A          112 SYAKNGELLKYIRKIG-------SFDETCTRFYTAEIVSALEYLHGK---GIIHR  156 (311)
T ss_dssp             CCCTTEEHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             ecCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCccC
Confidence            9999999999998654       688999999999999999999999   99998

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.90  E-value=4.1e-24  Score=203.65  Aligned_cols=120  Identities=19%  Similarity=0.240  Sum_probs=107.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +.|+..+.||+|+||+||+|+.. +|+.||||+++... ....+.+.+|+++|++++|||||++++++.+++..||||||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~-~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy  152 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRK-QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF  152 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGG-CSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCc-hhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeC
Confidence            45777789999999999999974 79999999995432 33455789999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |++|+|.+++++.        .+++.++..++.||+.||+|||++   +||||
T Consensus       153 ~~gg~L~~~l~~~--------~l~e~~~~~~~~qi~~aL~ylH~~---~IiHR  194 (346)
T 4fih_A          153 LEGGALTDIVTHT--------RMNEEQIAAVCLAVLQALSVLHAQ---GVIHR  194 (346)
T ss_dssp             CTTEEHHHHHHHS--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             CCCCcHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            9999999999753        488999999999999999999999   99998

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.90  E-value=6.7e-24  Score=200.15  Aligned_cols=120  Identities=20%  Similarity=0.239  Sum_probs=99.3

Q ss_pred             CCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC----ceeEEe
Q 014778          289 NFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT----ERLLVY  364 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~----~~~lv~  364 (419)
                      ++...+.||+|+||+||+|++ +|+.||||+++....  ....+..|+..+.+++|||||+++|+|.+++    ..+|||
T Consensus         4 ~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~--~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~   80 (303)
T 3hmm_A            4 TIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE--RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS   80 (303)
T ss_dssp             GEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH--HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred             EEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch--hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence            355668999999999999998 589999999964321  1122345566667899999999999998754    479999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhcc-----ccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSC-----VSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~-----~p~IiHR  419 (419)
                      |||++|||.++|+..        .++|.++++++.|+|+||+|||+++     +|+||||
T Consensus        81 Ey~~~gsL~~~l~~~--------~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHR  132 (303)
T 3hmm_A           81 DYHEHGSLFDYLNRY--------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHR  132 (303)
T ss_dssp             ECCTTCBHHHHHHHC--------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECS
T ss_pred             cCCCCCcHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeec
Confidence            999999999999864        4788999999999999999999763     6799998

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.90  E-value=3.5e-24  Score=205.63  Aligned_cols=139  Identities=22%  Similarity=0.350  Sum_probs=114.9

Q ss_pred             ccHHHHHHHhhCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCC-CCCcce
Q 014778          278 FSLRELQVATDNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVH-RNLLRL  350 (419)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H-~niv~l  350 (419)
                      +..++++.+.++|...+.||+|+||+||+|.+.      +++.||||+++........++|.+|+++|.+++| ||||++
T Consensus        54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l  133 (353)
T 4ase_A           54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL  133 (353)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEE
Confidence            345667778889999999999999999999863      2468999999765444446689999999999965 899999


Q ss_pred             eEEEecC-CceeEEeccCCCCChhhhhcCCccc---------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          351 RGFCMTP-TERLLVYPFMVNGSVASCLRGMFIV---------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       351 ~g~~~~~-~~~~lv~e~~~~GsL~~~L~~~~~~---------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|+|..+ +..++|||||++|+|.++|+.....         ......+++.+++.++.|||+||+|||++   +||||
T Consensus       134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHR  209 (353)
T 4ase_A          134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHR  209 (353)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecC
Confidence            9999775 5689999999999999999864321         01123588999999999999999999999   99998

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.89  E-value=1.2e-23  Score=205.32  Aligned_cols=121  Identities=19%  Similarity=0.238  Sum_probs=108.2

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .+.|...+.||+|+||.||+|+.. +|+.||||+++... ....+.+.+|+.+|++++|||||++++++.+++..|||||
T Consensus       150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~-~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmE  228 (423)
T 4fie_A          150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRK-QQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME  228 (423)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTT-CSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccc-hhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEe
Confidence            356888899999999999999974 79999999995432 3345578999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||++|+|.++++..        .+++.++..++.||+.||+|||++   +||||
T Consensus       229 y~~gG~L~~~i~~~--------~l~e~~~~~~~~qil~aL~ylH~~---~IiHR  271 (423)
T 4fie_A          229 FLEGGALTDIVTHT--------RMNEEQIAAVCLAVLQALSVLHAQ---GVIHR  271 (423)
T ss_dssp             CCTTEEHHHHHHHS--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             CCCCCcHHHHHhcc--------CCCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            99999999999754        488899999999999999999999   99998

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.89  E-value=1.2e-23  Score=196.28  Aligned_cols=120  Identities=22%  Similarity=0.333  Sum_probs=101.4

Q ss_pred             CCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEec----CCceeEEec
Q 014778          292 NRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMT----PTERLLVYP  365 (419)
Q Consensus       292 ~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~lv~e  365 (419)
                      ..+.||+|+||+||+|... ++..||||++..... ....+.|.+|+++|++++|||||++++++.+    ++..+||||
T Consensus        30 ~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvmE  109 (290)
T 3fpq_A           30 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTE  109 (290)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEEE
T ss_pred             eeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEEe
Confidence            3467999999999999974 689999999964332 2234579999999999999999999999865    345799999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||++|+|.+++++..       .+++..+..++.||+.||+|||++ .|+||||
T Consensus       110 y~~gg~L~~~l~~~~-------~l~~~~~~~~~~qi~~aL~ylH~~-~~~IiHR  155 (290)
T 3fpq_A          110 LMTSGTLKTYLKRFK-------VMKIKVLRSWCRQILKGLQFLHTR-TPPIIHR  155 (290)
T ss_dssp             CCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCC
T ss_pred             CCCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC-CCCEEec
Confidence            999999999998654       588899999999999999999977 2349998

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.89  E-value=2.4e-23  Score=195.68  Aligned_cols=125  Identities=16%  Similarity=0.255  Sum_probs=102.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC--------
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT--------  358 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--------  358 (419)
                      ++|+..+.||+|+||+||+|+.. +|+.||||+++........+.+.+|+++|++++|||||++++++.+.+        
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~   84 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS   84 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence            46888899999999999999964 799999999964433334567999999999999999999999987643        


Q ss_pred             ----ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 ----ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 ----~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                          ..|+|||||++|+|.++++......    ...+..+..++.||++||+|||++   +||||
T Consensus        85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~----~~~~~~~~~i~~qi~~al~ylH~~---~IiHR  142 (299)
T 4g31_A           85 SPKVYLYIQMQLCRKENLKDWMNGRCTIE----ERERSVCLHIFLQIAEAVEFLHSK---GLMHR  142 (299)
T ss_dssp             --CEEEEEEEECCCSCCHHHHHHTCCSGG----GSCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             CCCcEEEEEEecCCCCcHHHHHHhcCCCC----hhHHHHHHHHHHHHHHHHHHHHHC---cCccc
Confidence                3689999999999999998754211    234556788999999999999999   99998

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.89  E-value=1.5e-23  Score=199.16  Aligned_cols=117  Identities=16%  Similarity=0.188  Sum_probs=104.2

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .+.|...+.||+|+||+||+|+. .+|+.||||+++....      +.+|+.+|++++|||||++++++.+++..|||||
T Consensus        57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~------~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmE  130 (336)
T 4g3f_A           57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF------RVEELVACAGLSSPRIVPLYGAVREGPWVNIFME  130 (336)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC------CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh------HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            34567778899999999999997 4799999999964321      2579999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||++|+|.++|+...       .+++.++..++.||+.||+|||++   +||||
T Consensus       131 y~~gg~L~~~l~~~~-------~l~e~~~~~~~~qi~~aL~ylH~~---~IiHR  174 (336)
T 4g3f_A          131 LLEGGSLGQLIKQMG-------CLPEDRALYYLGQALEGLEYLHTR---RILHG  174 (336)
T ss_dssp             CCTTCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHTT---TEECS
T ss_pred             ccCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Cceec
Confidence            999999999998654       588999999999999999999999   99998

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.88  E-value=4.9e-23  Score=190.59  Aligned_cols=121  Identities=18%  Similarity=0.268  Sum_probs=103.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...+.||+|+||+||+|+. .+|+.||||+++...  .....+.+.+|+++|++++|||||++++++.+++..++||
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm   92 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI   92 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence            5788899999999999999996 479999999995432  2233567999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+ +|+|.+++....       .+++.++..++.||+.||+|||++   +||||
T Consensus        93 Ey~-~g~L~~~l~~~~-------~l~e~~~~~~~~qi~~al~ylH~~---~IiHR  136 (275)
T 3hyh_A           93 EYA-GNELFDYIVQRD-------KMSEQEARRFFQQIISAVEYCHRH---KIVHR  136 (275)
T ss_dssp             ECC-CEEHHHHHHHSC-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             eCC-CCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            999 689999997654       688999999999999999999999   99998

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.88  E-value=1.1e-23  Score=197.62  Aligned_cols=122  Identities=20%  Similarity=0.280  Sum_probs=101.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC----CCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT----DGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      ++|...+.||+|+||+||+|+..    +++.||||+++... .......+.+|+++|++++|||||++++++.+++..|+
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i  103 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL  103 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            46888899999999999999852    47899999996432 12223468899999999999999999999999999999


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||||++|+|.+++++..       .+++.++..++.||+.||+|||++   +||||
T Consensus       104 vmEy~~gg~L~~~l~~~~-------~l~e~~~~~~~~qi~~aL~ylH~~---~IiHR  150 (304)
T 3ubd_A          104 ILDFLRGGDLFTRLSKEV-------MFTEEDVKFYLAELALALDHLHSL---GIIYR  150 (304)
T ss_dssp             EECCCTTCEEHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEEcCCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCcCC
Confidence            999999999999998654       588999999999999999999999   99998

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=1.7e-23  Score=199.92  Aligned_cols=176  Identities=20%  Similarity=0.322  Sum_probs=150.5

Q ss_pred             ccCChHHHHHHHHHHHhc-CCCCCCCCCCC---CCCCCCCCcceeEeC---------CCCCEEEEEcCCCCccccchhhh
Q 014778           23 RVASNAEGDALNALKTNL-ADPNNVLQSWD---ATLVNPCTWFHVTCN---------SENSVTRVDLGNANLSGQLVSQL   89 (419)
Q Consensus        23 ~~~~~~~~~~l~~~~~~~-~~~~~~l~~w~---~~~~~~c~w~~v~c~---------~~~~~~~l~L~~~~l~g~~~~~~   89 (419)
                      ..+..+|.+||++||+.+ .++.+.+..|.   ....++|.|.|+.|.         ...+|+.|+|++|+++ .+|+.+
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l  100 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA  100 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence            345678999999999988 57777778894   345689999999995         2468999999999998 788889


Q ss_pred             hCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcC------
Q 014778           90 GQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTN------  163 (419)
Q Consensus        90 ~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~------  163 (419)
                      +++++|++|+|++|.++ .+|..++.+++|++|+|++|+++ .+|..++++++|++|+|++|++.+.+|..+..      
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~  178 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE  178 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence            99999999999999999 89999999999999999999998 89999999999999999999998999988765      


Q ss_pred             ---CCCCcEEEcccCcCCCCCC-CCCCccccccccccCCCCCC
Q 014778          164 ---VNSLQVLDLSNNKLTGDIP-TNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       164 ---l~~L~~l~l~~N~l~g~~p-~~~~~~~~~~~~~~~n~~~~  202 (419)
                         +++|++|++++|+++ .+| ....+.+++.+++++|.+..
T Consensus       179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~  220 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA  220 (328)
T ss_dssp             EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred             hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence               889999999999988 555 45667778888888888764

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.88  E-value=1.9e-22  Score=192.05  Aligned_cols=152  Identities=72%  Similarity=1.058  Sum_probs=126.6

Q ss_pred             CCCcccccCccccccHHHHHHHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCC
Q 014778          265 EEDPEVHLGQLKRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVH  344 (419)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H  344 (419)
                      .+.+....+....+++.++...+++|...+.||+|+||.||+|...+|+.||||++...........|.+|+++++.++|
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h   86 (326)
T 3uim_A            7 EEDPEVHLGQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVH   86 (326)
T ss_dssp             --------CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCC
T ss_pred             ccCcccccCccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccC
Confidence            34444556667789999999999999999999999999999999888999999999755444444579999999999999


Q ss_pred             CCCcceeEEEecCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          345 RNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       345 ~niv~l~g~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++++++..++..++||||+++|+|.++++....   ....+++..+..++.|++.||+|||+.+.|+|+||
T Consensus        87 ~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~  158 (326)
T 3uim_A           87 RNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPE---SQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHR  158 (326)
T ss_dssp             TTBCCCCEEECCSSCCEEEEECCTTCBHHHHHHCCST---TCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECC
T ss_pred             CCccceEEEEecCCceEEEEEeccCCCHHHHHHhccc---cCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeC
Confidence            9999999999999999999999999999999987542   22258899999999999999999999988899997

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.85  E-value=2.1e-21  Score=189.44  Aligned_cols=121  Identities=15%  Similarity=0.276  Sum_probs=104.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecC------Cc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTP------TE  359 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~~  359 (419)
                      ++|...+.||+|+||+||+|.. .+|+.||||+++.... ....+.+.+|+++|+.++|||||++++++...      +.
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            4678889999999999999996 4799999999964322 22245788999999999999999999998643      56


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .|||||||+ |+|.+++....       .+++.++..++.||+.||+|||++   +||||
T Consensus       134 ~~ivmE~~~-g~L~~~i~~~~-------~l~~~~~~~~~~qil~al~ylH~~---~iiHR  182 (398)
T 4b99_A          134 VYVVLDLME-SDLHQIIHSSQ-------PLTLEHVRYFLYQLLRGLKYMHSA---QVIHR  182 (398)
T ss_dssp             EEEEEECCS-EEHHHHHTSSS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCC
T ss_pred             EEEEEeCCC-CCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---cCcCC
Confidence            899999996 78999998754       688999999999999999999999   99998

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.84  E-value=5.2e-21  Score=195.46  Aligned_cols=122  Identities=18%  Similarity=0.257  Sum_probs=108.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ++|...+.||+|+||+||+|... +|+.||+|.+.... ....+.+.+|+.+|+.++|||||++++++.+++..++||||
T Consensus       157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~-~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~  235 (573)
T 3uto_A          157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH-ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  235 (573)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-HHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccc-hhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence            57888899999999999999974 79999999985432 22345789999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |++|+|.++|.....      .+++.++..++.||+.||+|||++   +|+||
T Consensus       236 ~~gg~L~~~i~~~~~------~l~e~~~~~~~~qi~~al~ylH~~---~iiHR  279 (573)
T 3uto_A          236 MSGGELFEKVADEHN------KMSEDEAVEYMRQVCKGLCHMHEN---NYVHL  279 (573)
T ss_dssp             CCCCBHHHHHTCTTS------CEEHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             cCCCcHHHHHHHhCC------CCCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            999999999975432      588999999999999999999999   99998

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=3.3e-20  Score=167.82  Aligned_cols=147  Identities=24%  Similarity=0.267  Sum_probs=130.6

Q ss_pred             CCCCCcceeEeCCC----------CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEec
Q 014778           55 VNPCTWFHVTCNSE----------NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDL  124 (419)
Q Consensus        55 ~~~c~w~~v~c~~~----------~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~l  124 (419)
                      .+.|+|.+|.|...          .+++.|+|++|++++..|..|..+++|++|+|++|.|++..+..|..+++|++|+|
T Consensus        16 ~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           16 QCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             TCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            57899999999842          36899999999999998999999999999999999998555566799999999999


Q ss_pred             cccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCC
Q 014778          125 YLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       125 s~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~  202 (419)
                      ++|++++..+..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..+. ...+..++.+++.+|++.+
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            999999766667899999999999999999 8999999999999999999999977664 5667888999999998764

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.83  E-value=8.6e-21  Score=201.24  Aligned_cols=115  Identities=37%  Similarity=0.636  Sum_probs=109.8

Q ss_pred             CCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEE
Q 014778           91 QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVL  170 (419)
Q Consensus        91 ~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l  170 (419)
                      .+++|++|||++|.++|.+|.+|+.+++|+.|||++|+++|.+|..++++++|+.|||++|+++|.+|..+.++++|++|
T Consensus       630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  709 (768)
T 3rgz_A          630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI  709 (768)
T ss_dssp             SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred             ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcccCcCCCCCCCCCCccccccccccCCCCCCCCC
Q 014778          171 DLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPP  205 (419)
Q Consensus       171 ~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~~~  205 (419)
                      |+++|+++|.||..+.+..+...++.+|+..|+++
T Consensus       710 ~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~  744 (768)
T 3rgz_A          710 DLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP  744 (768)
T ss_dssp             ECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT
T ss_pred             ECcCCcccccCCCchhhccCCHHHhcCCchhcCCC
Confidence            99999999999999999999999999999887654

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.82  E-value=1.5e-20  Score=178.66  Aligned_cols=135  Identities=34%  Similarity=0.557  Sum_probs=116.3

Q ss_pred             ccHHHHHHHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecC
Q 014778          278 FSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP  357 (419)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~  357 (419)
                      +++.++...+++|...+.||+|+||.||+|..++|+.||||++.... ....+.|.+|+.+++.++||||+++++++...
T Consensus        29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  107 (321)
T 2qkw_B           29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPES-SQGIEEFETEIETLSFCRHPHLVSLIGFCDER  107 (321)
T ss_dssp             -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCC-SSHHHHHHHHHHGGGSCCCTTBCCEEEECCCT
T ss_pred             ecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccC-hHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC
Confidence            34445556788999999999999999999998889999999986432 23356899999999999999999999999999


Q ss_pred             CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +..++||||+++|+|.+++.....   ....+++.++..++.|+++||+|||+.   +|+||
T Consensus       108 ~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~  163 (321)
T 2qkw_B          108 NEMILIYKYMENGNLKRHLYGSDL---PTMSMSWEQRLEICIGAARGLHYLHTR---AIIHR  163 (321)
T ss_dssp             TCCEEEEECCTTCBTGGGSSSSCC---CSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             CeEEEEEEcCCCCcHHHHHhccCC---CccccCHHHHHHHHHHHHHHHHHhcCC---CeecC
Confidence            999999999999999999976532   122588999999999999999999998   99997

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.82  E-value=2.5e-20  Score=179.81  Aligned_cols=118  Identities=15%  Similarity=0.266  Sum_probs=104.2

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC----CCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCce
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT----DGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~  360 (419)
                      ..+.|...+.||+|+||+||+|+.+    +++.||||++...   .....+.+|+++|..+ +|||||++++++.+.+..
T Consensus        19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~---~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~   95 (361)
T 4f9c_A           19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT---SHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHV   95 (361)
T ss_dssp             GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT---SCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEE
T ss_pred             ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc---cCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEE
Confidence            4567999999999999999999852    4678999998543   2355789999999988 699999999999999999


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++|+|.++++          .+++.++..++.|++.||+|||++   +||||
T Consensus        96 ~lvmE~~~g~~L~~~~~----------~l~~~~~~~~~~qll~al~ylH~~---gIiHR  141 (361)
T 4f9c_A           96 VIAMPYLEHESFLDILN----------SLSFQEVREYMLNLFKALKRIHQF---GIVHR  141 (361)
T ss_dssp             EEEEECCCCCCHHHHHT----------TCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEEEeCCCcccHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeC
Confidence            99999999999999984          377888999999999999999999   99998

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.82  E-value=2.2e-20  Score=190.82  Aligned_cols=123  Identities=24%  Similarity=0.354  Sum_probs=105.1

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHH---HHHHHhcCCCCCCcceeEEEecCCce
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQT---EVEMISMAVHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~---E~~~l~~l~H~niv~l~g~~~~~~~~  360 (419)
                      .++|...++||+|+||+||+|+.. +|+.||||+++...  .........+   ++.+++.++|||||++++++.+++..
T Consensus       188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l  267 (689)
T 3v5w_A          188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL  267 (689)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence            367888999999999999999974 79999999995332  1222333333   46677889999999999999999999


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|||||++|+|.++|....       .+++..+..++.||+.||+|||++   +||||
T Consensus       268 ylVmEy~~GGdL~~~l~~~~-------~l~E~~a~~y~~qIl~aL~yLH~~---gIiHR  316 (689)
T 3v5w_A          268 SFILDLMNGGDLHYHLSQHG-------VFSEADMRFYAAEIILGLEHMHNR---FVVYR  316 (689)
T ss_dssp             EEEECCCCSCBHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHTT---TEECC
T ss_pred             EEEEecCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            99999999999999998654       688999999999999999999999   99998

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.82  E-value=6.9e-20  Score=164.64  Aligned_cols=146  Identities=22%  Similarity=0.306  Sum_probs=130.1

Q ss_pred             CCCcceeEeCCC----------CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccc
Q 014778           57 PCTWFHVTCNSE----------NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYL  126 (419)
Q Consensus        57 ~c~w~~v~c~~~----------~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~  126 (419)
                      .|.|..+.|...          ..++.|+|++|++++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++
T Consensus        10 ~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           10 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             EEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             EECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            357999999742          3689999999999988888999999999999999999988899999999999999999


Q ss_pred             cccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCC
Q 014778          127 NNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       127 N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~  202 (419)
                      |++++..+..+..+++|+.|+|++|++++..|..|..+++|+.|++++|++++..+. ...+..++.+++++|++.+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            999954444578999999999999999998899999999999999999999988775 5667888999999998764

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.81  E-value=3.8e-20  Score=179.79  Aligned_cols=124  Identities=26%  Similarity=0.402  Sum_probs=108.3

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC----CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      .++|...+.||+|+||.||+|+..    ++..||||.++........++|.+|+.++++++||||+++++++...+..++
T Consensus        44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  123 (373)
T 2qol_A           44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI  123 (373)
T ss_dssp             GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred             HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence            357888899999999999999864    5678999999654333345689999999999999999999999999999999


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||+++|+|.++++....      .+++.++..++.||++||+|||+.   +|+||
T Consensus       124 v~e~~~~~sL~~~l~~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~  171 (373)
T 2qol_A          124 VTEYMENGSLDSFLRKHDA------QFTVIQLVGMLRGIASGMKYLSDM---GYVHR  171 (373)
T ss_dssp             EEECCTTCBHHHHHHTTTT------CSCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEeCCCCCcHHHHHHhCCC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeCC
Confidence            9999999999999986532      588889999999999999999999   99998

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=9.4e-20  Score=163.76  Aligned_cols=146  Identities=18%  Similarity=0.260  Sum_probs=129.7

Q ss_pred             CCCcceeEeCCC----------CCEEEEEcCCCCccccch-hhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEecc
Q 014778           57 PCTWFHVTCNSE----------NSVTRVDLGNANLSGQLV-SQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLY  125 (419)
Q Consensus        57 ~c~w~~v~c~~~----------~~~~~l~L~~~~l~g~~~-~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls  125 (419)
                      .|.|..+.|+..          ..++.|+|++|+|++..+ ..|..+++|++|+|++|.|++..|..|..+++|++|+|+
T Consensus        10 ~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           10 RCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            357999999742          257899999999998765 458999999999999999998777799999999999999


Q ss_pred             ccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCC
Q 014778          126 LNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       126 ~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~  202 (419)
                      +|++++..|..+.++++|+.|+|++|++++..|..|..+++|+.|++++|++++.+|. ...+.+++.+++++|++.+
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            9999987788899999999999999999998899999999999999999999998774 5667888999999998764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=2.7e-19  Score=159.17  Aligned_cols=147  Identities=24%  Similarity=0.266  Sum_probs=128.2

Q ss_pred             CCCCcceeEeCCC----------CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEecc
Q 014778           56 NPCTWFHVTCNSE----------NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLY  125 (419)
Q Consensus        56 ~~c~w~~v~c~~~----------~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls  125 (419)
                      ..|.|.+|.|...          .+++.|+|++|++++..+..+..+++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus         5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A            5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence            3468999999742          368999999999998777788999999999999999996656667899999999999


Q ss_pred             ccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCC
Q 014778          126 LNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       126 ~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~  202 (419)
                      +|++++..+..+.++++|+.|+|++|++++..+..+..+++|+.|++++|++++.++. ...+.+++.+++++|++.+
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence            9999966666689999999999999999977777789999999999999999987765 4668889999999997764

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.81  E-value=1.9e-19  Score=171.14  Aligned_cols=132  Identities=16%  Similarity=0.196  Sum_probs=114.6

Q ss_pred             ccccHHHHHHHhhC----------CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCC
Q 014778          276 KRFSLRELQVATDN----------FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVH  344 (419)
Q Consensus       276 ~~~~~~~~~~~~~~----------~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H  344 (419)
                      ..++++++..+++.          |...+.||+|+||.||+|... +|+.||||+++.. .....+.+.+|+.++++++|
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h  101 (321)
T 2c30_A           23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLR-KQQRRELLFNEVVIMRDYQH  101 (321)
T ss_dssp             --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETT-TCCSHHHHHHHHHHHTTCCC
T ss_pred             CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEecc-chhHHHHHHHHHHHHHhCCC
Confidence            35778888877764          555678999999999999975 7999999999543 23446679999999999999


Q ss_pred             CCCcceeEEEecCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          345 RNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       345 ~niv~l~g~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++++++...+..++||||+++|+|.+++...        .+++.++..++.|++.||+|||+.   +|+||
T Consensus       102 ~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~--------~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~  165 (321)
T 2c30_A          102 FNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV--------RLNEEQIATVCEAVLQALAYLHAQ---GVIHR  165 (321)
T ss_dssp             TTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             CCcceEEEEEEECCEEEEEEecCCCCCHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            99999999999999999999999999999998754        478899999999999999999998   99997

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.80  E-value=4e-20  Score=179.88  Aligned_cols=125  Identities=23%  Similarity=0.391  Sum_probs=109.1

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ..++|...+.||+|+||.||+|... +++.||||.++........++|.+|+++|++++|||||+++|+|...+..++||
T Consensus       112 ~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  191 (377)
T 3cbl_A          112 NHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVM  191 (377)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             chHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEE
Confidence            4567788899999999999999985 789999999965433223446899999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.++++....      .+++.++..++.||++||+|||+.   +|+||
T Consensus       192 e~~~~g~L~~~l~~~~~------~~~~~~~~~~~~qi~~~l~~LH~~---~ivHr  237 (377)
T 3cbl_A          192 ELVQGGDFLTFLRTEGA------RLRVKTLLQMVGDAAAGMEYLESK---CCIHR  237 (377)
T ss_dssp             ECCTTCBHHHHHHHHGG------GCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EcCCCCCHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---CcCCc
Confidence            99999999999985431      478889999999999999999999   99998

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.80  E-value=4.8e-19  Score=166.93  Aligned_cols=137  Identities=31%  Similarity=0.481  Sum_probs=119.3

Q ss_pred             cccccHHHHHHHhhCCCCC------CeeCcCCceEEEEEEeCCCCEEEEEEcccccc---ccCHHHHHHHHHHHhcCCCC
Q 014778          275 LKRFSLRELQVATDNFSNR------NILGRGGFGKVYKGRLTDGSLVAVKRLKEERT---QGGELQFQTEVEMISMAVHR  345 (419)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~------~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~---~~~~~~f~~E~~~l~~l~H~  345 (419)
                      ...+++.++..++++|...      +.||+|+||.||+|.. +++.||||++.....   ....+.|.+|+.++++++||
T Consensus        12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~   90 (307)
T 2nru_A           12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE   90 (307)
T ss_dssp             CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred             CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence            4578999999999999988      8999999999999997 588999999864321   22256799999999999999


Q ss_pred             CCcceeEEEecCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          346 NLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       346 niv~l~g~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++++++...+..++||||+++|+|.+++.....    ...+++..+..++.|+++||+|||+.   +|+||
T Consensus        91 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~  157 (307)
T 2nru_A           91 NLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDG----TPPLSWHMRCKIAQGAANGINFLHEN---HHIHR  157 (307)
T ss_dssp             TBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGG----CCCCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             CeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccC----CCCCCHHHHHHHHHHHHHHHHHHhcC---CeecC
Confidence            999999999999999999999999999999975431    12588899999999999999999999   99997

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.80  E-value=6.8e-20  Score=177.59  Aligned_cols=130  Identities=26%  Similarity=0.392  Sum_probs=111.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCce
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  360 (419)
                      .++|...+.||+|+||.||+|.+.      +++.||||+++.........++.+|+.++++++|||||++++++......
T Consensus        70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~  149 (367)
T 3l9p_A           70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR  149 (367)
T ss_dssp             GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence            356778899999999999999953      46689999996544444456799999999999999999999999999999


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++|+|.++++...........+++.+++.++.||++||+|||+.   +|+||
T Consensus       150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHr  205 (367)
T 3l9p_A          150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHR  205 (367)
T ss_dssp             EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCC
Confidence            999999999999999986543333444689999999999999999999999   99998

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.80  E-value=1.2e-19  Score=172.90  Aligned_cols=123  Identities=24%  Similarity=0.344  Sum_probs=107.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC----CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      +.|...+.||+|+||.||+|...    .+..||||.++........+.|.+|+.++++++||||+++++++.+.+..++|
T Consensus        49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  128 (325)
T 3kul_A           49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIV  128 (325)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEE
T ss_pred             hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEE
Confidence            45667789999999999999974    34569999997544444456899999999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.++++....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus       129 ~e~~~~~~L~~~l~~~~~------~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~  175 (325)
T 3kul_A          129 TEYMENGSLDTFLRTHDG------QFTIMQLVGMLRGVGAGMRYLSDL---GYVHR  175 (325)
T ss_dssp             EECCTTCBHHHHHHTTTT------CSCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             eeCCCCCcHHHHHHhccc------CCCHHHHHHHHHHHHHHHHHHHHC---CeeCC
Confidence            999999999999975432      588899999999999999999999   99997

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.80  E-value=2.1e-19  Score=169.79  Aligned_cols=122  Identities=16%  Similarity=0.331  Sum_probs=107.6

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ++|...+.||+|+||+||+|... +++.||+|++... .....+.|.+|++++.+++||||+++++++.+++..++||||
T Consensus        10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~-~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~   88 (310)
T 3s95_A           10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRF-DEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY   88 (310)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCC-CHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccC-CHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence            46777899999999999999974 6899999998432 223456799999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.++++....      .+++.++..++.|+++||+|||+.   +|+||
T Consensus        89 ~~~~~L~~~l~~~~~------~~~~~~~~~i~~qi~~al~~lH~~---~ivH~  132 (310)
T 3s95_A           89 IKGGTLRGIIKSMDS------QYPWSQRVSFAKDIASGMAYLHSM---NIIHR  132 (310)
T ss_dssp             CTTCBHHHHHHHCCT------TSCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             cCCCcHHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHhC---CccCC
Confidence            999999999986432      588899999999999999999999   99997

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.79  E-value=3.2e-19  Score=169.70  Aligned_cols=126  Identities=14%  Similarity=0.217  Sum_probs=105.2

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc------
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE------  359 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~------  359 (419)
                      .++|...+.||+|+||.||+|+.. +|+.||||+++........+.+.+|++++++++|||||++++++.+.+.      
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   84 (332)
T 3qd2_B            5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE   84 (332)
T ss_dssp             HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred             hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence            356788899999999999999975 7999999999644433445789999999999999999999999866432      


Q ss_pred             ---------------------------------------------------eeEEeccCCCCChhhhhcCCccccCCCcc
Q 014778          360 ---------------------------------------------------RLLVYPFMVNGSVASCLRGMFIVSGFPSF  388 (419)
Q Consensus       360 ---------------------------------------------------~~lv~e~~~~GsL~~~L~~~~~~~~~~~~  388 (419)
                                                                         .++||||+++|+|.+++......    ..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~----~~  160 (332)
T 3qd2_B           85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSL----ED  160 (332)
T ss_dssp             HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSG----GG
T ss_pred             hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCc----cc
Confidence                                                               78999999999999999876421    13


Q ss_pred             hhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          389 FSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       389 ~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..+..+..++.||+.||+|||+.   +|+||
T Consensus       161 ~~~~~~~~i~~qi~~aL~~LH~~---~ivH~  188 (332)
T 3qd2_B          161 REHGVCLHIFIQIAEAVEFLHSK---GLMHR  188 (332)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhC---Ceeec
Confidence            45566889999999999999999   99998

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.79  E-value=1.8e-19  Score=174.85  Aligned_cols=130  Identities=21%  Similarity=0.324  Sum_probs=108.8

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe--------CCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecC
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL--------TDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTP  357 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~--------~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  357 (419)
                      .++|...+.||+|+||.||+|+.        .++..||||+++........+.+.+|++++.++ +||||++++++|...
T Consensus        80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  159 (370)
T 2psq_A           80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD  159 (370)
T ss_dssp             GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred             HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence            45677889999999999999985        235679999997554333456799999999999 899999999999999


Q ss_pred             CceeEEeccCCCCChhhhhcCCccc---------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIV---------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~---------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +..++||||+++|+|.++++.....         ......+++.++..++.||++||+|||+.   +|+||
T Consensus       160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHr  227 (370)
T 2psq_A          160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHR  227 (370)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            9999999999999999999864311         01123578889999999999999999999   99998

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.79  E-value=1.5e-19  Score=172.01  Aligned_cols=122  Identities=16%  Similarity=0.180  Sum_probs=105.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ++|...+.||+|+||.||+|... +++.||||.+.........+.+.+|+.+++.++||||+++++++.+.+..++||||
T Consensus         7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~   86 (323)
T 3tki_A            7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY   86 (323)
T ss_dssp             TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEc
Confidence            56788899999999999999975 78999999986443333345789999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus        87 ~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~aL~~LH~~---givH~  129 (323)
T 3tki_A           87 CSGGELFDRIEPDI-------GMPEPDAQRFFHQLMAGVVYLHGI---GITHR  129 (323)
T ss_dssp             CTTEEGGGGSBTTT-------BCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             CCCCcHHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            99999999998654       588889999999999999999999   99997

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.79  E-value=3.7e-19  Score=171.93  Aligned_cols=123  Identities=19%  Similarity=0.271  Sum_probs=108.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc-----cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCce
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ-----GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-----~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  360 (419)
                      .+.|...+.||+|+||.||+|... +|+.||||.++.....     ...+.+.+|+.++.+++||||+++++++.+.+..
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~   90 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV   90 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence            356788899999999999999975 6999999999643221     1356899999999999999999999999999999


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus        91 ~lv~e~~~gg~L~~~l~~~~-------~l~~~~~~~i~~qi~~aL~~LH~~---givHr  139 (361)
T 2yab_A           91 VLILELVSGGELFDFLAQKE-------SLSEEEATSFIKQILDGVNYLHTK---KIAHF  139 (361)
T ss_dssp             EEEEECCCSCBHHHHHTTCS-------CCBHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EEEEEcCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            99999999999999997654       588999999999999999999999   99998

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.79  E-value=3.9e-19  Score=164.33  Aligned_cols=122  Identities=22%  Similarity=0.375  Sum_probs=108.6

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      .++|...+.||+|+||.||+|...+++.||+|++....  ...+++.+|++++.+++||||+++++++.+.+..++||||
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   86 (269)
T 4hcu_A            9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA--MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEF   86 (269)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTS--BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             hhhceeeheecCCCccEEEEEEecCCCeEEEEEecccc--cCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEe
Confidence            35677789999999999999998888899999996432  2456899999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.++++....      .+++..+..++.|+++||+|||+.   +|+||
T Consensus        87 ~~~~~L~~~l~~~~~------~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~  130 (269)
T 4hcu_A           87 MEHGCLSDYLRTQRG------LFAAETLLGMCLDVCEGMAYLEEA---CVIHR  130 (269)
T ss_dssp             CTTCBHHHHHHTTTT------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             CCCCcHHHHHHhcCc------ccCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            999999999976532      578888999999999999999999   99997

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.79  E-value=8.3e-19  Score=160.75  Aligned_cols=136  Identities=24%  Similarity=0.282  Sum_probs=122.5

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN  149 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~  149 (419)
                      .++.|+|++|++++..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..+..+++|++|+|+
T Consensus        36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  115 (251)
T 3m19_A           36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG  115 (251)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence            58899999999999888899999999999999999998888889999999999999999997777788999999999999


Q ss_pred             cCcCcccCCccCcCCCCCcEEEcccCcCCCCCC-CCCCccccccccccCCCCCCCCC
Q 014778          150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP-TNGSFSLFTPISFANNQLNNPPP  205 (419)
Q Consensus       150 ~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p-~~~~~~~~~~~~~~~n~~~~~~~  205 (419)
                      +|++++..+..+..+++|+.|++++|++++.+| ....+.+++.+++++|.+...++
T Consensus       116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A          116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            999997777778999999999999999998777 36678899999999999875543

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.79  E-value=2.3e-19  Score=171.13  Aligned_cols=123  Identities=17%  Similarity=0.234  Sum_probs=108.5

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      .++|...+.||+|+||.||+|.. .+|+.||||++..... ....+.+.+|+++++.++||||+++++++...+..++||
T Consensus        14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~   93 (328)
T 3fe3_A           14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM   93 (328)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence            45788889999999999999997 5799999999954332 223457889999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.|+++||+|||+.   +|+||
T Consensus        94 e~~~~~~L~~~l~~~~-------~l~~~~~~~~~~qi~~al~~lH~~---~ivHr  138 (328)
T 3fe3_A           94 EYASGGEVFDYLVAHG-------RMKEKEARSKFRQIVSAVQYCHQK---RIVHR  138 (328)
T ss_dssp             CCCTTCBHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             ECCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CEecc
Confidence            9999999999997653       578889999999999999999999   99998

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.79  E-value=5.6e-19  Score=166.04  Aligned_cols=121  Identities=16%  Similarity=0.264  Sum_probs=108.0

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .+.|...+.||+|+||+||+|.. .+|+.||||++.... ....+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   97 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQ-QPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME   97 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGG-CSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeeccc-ccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEE
Confidence            45788889999999999999995 578999999985432 3346679999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++...        .+++.++..++.|++.||+|||+.   +|+||
T Consensus        98 ~~~~~~L~~~~~~~--------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~  140 (297)
T 3fxz_A           98 YLAGGSLTDVVTET--------CMDEGQIAAVCRECLQALEFLHSN---QVIHR  140 (297)
T ss_dssp             CCTTCBHHHHHHHS--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             CCCCCCHHHHHhhc--------CCCHHHHHHHHHHHHHHHHHHHhC---CceeC
Confidence            99999999999754        477888999999999999999999   99998

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.79  E-value=1.2e-19  Score=159.59  Aligned_cols=126  Identities=25%  Similarity=0.354  Sum_probs=112.4

Q ss_pred             CCCcceeEeCCC----------CCEEEEEcCCCCccccchh-hhhCCCCCCEEEcccCcccccCCccccCCCcCcEEecc
Q 014778           57 PCTWFHVTCNSE----------NSVTRVDLGNANLSGQLVS-QLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLY  125 (419)
Q Consensus        57 ~c~w~~v~c~~~----------~~~~~l~L~~~~l~g~~~~-~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls  125 (419)
                      .|.|..+.|+..          ..++.|+|++|.+++..+. .++.+++|++|+|++|.|++..|..|..+++|++|+|+
T Consensus         7 ~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A            7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             EECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            367988888742          2688999999999887664 48999999999999999998889999999999999999


Q ss_pred             ccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCC
Q 014778          126 LNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP  182 (419)
Q Consensus       126 ~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p  182 (419)
                      +|++++..|..+.++++|++|+|++|++++..|..+..+++|+.|++++|++++..+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            999998888889999999999999999999999999999999999999999998766

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.79  E-value=1.5e-19  Score=178.94  Aligned_cols=132  Identities=14%  Similarity=0.226  Sum_probs=113.3

Q ss_pred             cHHHHHHHhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEe
Q 014778          279 SLRELQVATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCM  355 (419)
Q Consensus       279 ~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~  355 (419)
                      .+.++...+++|...++||+|+||+||+|+.. +++.||||+++...  .......+.+|..++..++|||||++++++.
T Consensus        65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  144 (437)
T 4aw2_A           65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ  144 (437)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence            34555566789999999999999999999975 58899999996422  1222335899999999999999999999999


Q ss_pred             cCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          356 TPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       356 ~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +.+..++|||||++|+|.++++....      .+++..+..++.||+.||+|||+.   +||||
T Consensus       145 ~~~~~~lV~Ey~~gg~L~~~l~~~~~------~l~e~~~~~~~~qi~~aL~~LH~~---giiHr  199 (437)
T 4aw2_A          145 DDNNLYLVMDYYVGGDLLTLLSKFED------RLPEEMARFYLAEMVIAIDSVHQL---HYVHR  199 (437)
T ss_dssp             CSSEEEEEECCCTTCBHHHHHHTTTT------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             eCCEEEEEEecCCCCcHHHHHHHccC------CCCHHHHHHHHHHHHHHHHHHHhC---CeEec
Confidence            99999999999999999999986421      588899999999999999999999   99998

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.79  E-value=5.9e-19  Score=167.46  Aligned_cols=125  Identities=18%  Similarity=0.250  Sum_probs=108.6

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC--ceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT--ERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--~~~lv~  364 (419)
                      +.|...+.||+|+||.||+|... +|+.||||+++........+.+.+|++++++++||||+++++++...+  ..++||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence            45777799999999999999975 589999999976554555678899999999999999999999998765  679999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++......    ..+++.++..++.||++||+|||+.   +|+||
T Consensus        89 e~~~~~~L~~~l~~~~~~----~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~  136 (319)
T 4euu_A           89 EFCPCGSLYTVLEEPSNA----YGLPESEFLIVLRDVVGGMNHLREN---GIVHR  136 (319)
T ss_dssp             ECCTTCBHHHHHHSGGGT----TCCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             eCCCCCCHHHHHHHhccc----cCCCHHHHHHHHHHHHHHHHHHHHC---CEecC
Confidence            999999999999875421    1388899999999999999999999   99997

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.78  E-value=4e-19  Score=170.10  Aligned_cols=123  Identities=20%  Similarity=0.239  Sum_probs=108.8

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      .++|...+.||+|+||+||+++.. +|+.||+|.++...  .......+.+|+.++..++||||+++++++.+.+..++|
T Consensus         4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv   83 (337)
T 1o6l_A            4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence            356888899999999999999974 69999999996432  233456789999999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus        84 ~E~~~gg~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHr  129 (337)
T 1o6l_A           84 MEYANGGELFFHLSRER-------VFTEERARFYGAEIVSALEYLHSR---DVVYR  129 (337)
T ss_dssp             EECCTTCBHHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCC
T ss_pred             EeCCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            99999999999997643       578889999999999999999999   99998

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.78  E-value=7e-19  Score=167.66  Aligned_cols=122  Identities=20%  Similarity=0.272  Sum_probs=107.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc-----cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCcee
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ-----GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-----~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  361 (419)
                      +.|...+.||+|+||.||+|... +|+.||||.++.....     ...+.+.+|+.++.+++||||+++++++...+..+
T Consensus        11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~   90 (326)
T 2y0a_A           11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   90 (326)
T ss_dssp             HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            45778899999999999999975 6899999998543221     13568999999999999999999999999999999


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus        91 lv~e~~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~al~~lH~~---~ivH~  138 (326)
T 2y0a_A           91 LILELVAGGELFDFLAEKE-------SLTEEEATEFLKQILNGVYYLHSL---QIAHF  138 (326)
T ss_dssp             EEEECCCSCBHHHHHTTSS-------CCBHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EEEEcCCCCCHHHHHHhcC-------CcCHHHHHHHHHHHHHHHHHHHHC---CeEcC
Confidence            9999999999999997653       588899999999999999999999   99997

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.78  E-value=2.1e-19  Score=172.10  Aligned_cols=135  Identities=23%  Similarity=0.371  Sum_probs=112.3

Q ss_pred             HHHHHhhCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEe
Q 014778          282 ELQVATDNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM  355 (419)
Q Consensus       282 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~  355 (419)
                      ++....++|...+.||+|+||.||+|+..      +++.||||.++........+.|.+|+.++.+++||||+++++++.
T Consensus        41 ~~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~  120 (343)
T 1luf_A           41 SLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCA  120 (343)
T ss_dssp             HTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC
T ss_pred             eeEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc
Confidence            33445678889999999999999999974      347899999975443334567999999999999999999999999


Q ss_pred             cCCceeEEeccCCCCChhhhhcCCcccc-----------------CCCcchhhHHHHHHHHHHHHHHHHhhhccccceec
Q 014778          356 TPTERLLVYPFMVNGSVASCLRGMFIVS-----------------GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLF  418 (419)
Q Consensus       356 ~~~~~~lv~e~~~~GsL~~~L~~~~~~~-----------------~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiH  418 (419)
                      ..+..++||||+++|+|.++++......                 .....+++.++..++.||++||+|||+.   +|+|
T Consensus       121 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ivH  197 (343)
T 1luf_A          121 VGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVH  197 (343)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCC
T ss_pred             cCCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---Ceec
Confidence            9999999999999999999997642100                 0113688999999999999999999999   9999


Q ss_pred             C
Q 014778          419 C  419 (419)
Q Consensus       419 R  419 (419)
                      |
T Consensus       198 ~  198 (343)
T 1luf_A          198 R  198 (343)
T ss_dssp             S
T ss_pred             C
Confidence            7

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.78  E-value=7.6e-20  Score=183.84  Aligned_cols=129  Identities=27%  Similarity=0.197  Sum_probs=81.6

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccC-CCCCCCEEE
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLG-KLSKLRFLR  147 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~-~l~~L~~l~  147 (419)
                      .+++.|+|++|.+++..+.   .+++|+.|+|++|.+++..|..++.+++|++|+|++|.+++.+|..+. ++++|+.|+
T Consensus        99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~  175 (487)
T 3oja_A           99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (487)
T ss_dssp             TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence            3456666666666655443   345666777777777666666666667777777777777666666664 566677777


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      |++|.+++. |. +..+++|+.|++++|++++.+|....+..++.+++++|.+.+
T Consensus       176 Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~  228 (487)
T 3oja_A          176 LQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL  228 (487)
T ss_dssp             CTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred             cCCCccccc-cc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc
Confidence            777776654 22 334666777777777776665555555666666666666654

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.78  E-value=1.2e-19  Score=174.92  Aligned_cols=139  Identities=22%  Similarity=0.351  Sum_probs=114.4

Q ss_pred             ccHHHHHHHhhCCCCCCeeCcCCceEEEEEEe------CCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcce
Q 014778          278 FSLRELQVATDNFSNRNILGRGGFGKVYKGRL------TDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRL  350 (419)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l  350 (419)
                      +...++....++|...+.||+|+||.||+|.+      .+++.||||+++........+.|.+|++++.++ +|||||++
T Consensus        12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~   91 (359)
T 3vhe_A           12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   91 (359)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence            45566677788999999999999999999984      246799999996544333456799999999999 89999999


Q ss_pred             eEEEecCCc-eeEEeccCCCCChhhhhcCCcccc----------------------------------------------
Q 014778          351 RGFCMTPTE-RLLVYPFMVNGSVASCLRGMFIVS----------------------------------------------  383 (419)
Q Consensus       351 ~g~~~~~~~-~~lv~e~~~~GsL~~~L~~~~~~~----------------------------------------------  383 (419)
                      +++|...+. .++||||+++|+|.++++......                                              
T Consensus        92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (359)
T 3vhe_A           92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEK  171 (359)
T ss_dssp             EEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------------------------------------
T ss_pred             eeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccc
Confidence            999988654 899999999999999998654210                                              


Q ss_pred             -------------CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          384 -------------GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       384 -------------~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                                   .....+++..+..++.|+++||+|||+.   +|+||
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~  217 (359)
T 3vhe_A          172 SLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHR  217 (359)
T ss_dssp             ------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             ccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence                         0011288889999999999999999999   99997

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.78  E-value=8.9e-19  Score=163.12  Aligned_cols=123  Identities=23%  Similarity=0.368  Sum_probs=106.7

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      ..++|...+.||+|+||.||+|...++..||||+++...  ...+++.+|++++.+++||||+++++++.+.+..++|||
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   99 (283)
T 3gen_A           22 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS--MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITE   99 (283)
T ss_dssp             CGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTS--BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEC
T ss_pred             CHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCC--CCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEe
Confidence            455778889999999999999999888899999996432  245689999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.++++....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus       100 ~~~~~~L~~~l~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~  144 (283)
T 3gen_A          100 YMANGCLLNYLREMRH------RFQTQQLLEMCKDVCEAMEYLESK---QFLHR  144 (283)
T ss_dssp             CCTTCBHHHHHHCGGG------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             ccCCCcHHHHHHHhcc------CCCHHHHHHHHHHHHHHHHHHHHC---CccCC
Confidence            9999999999986432      588889999999999999999999   99997

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.78  E-value=2.1e-19  Score=176.42  Aligned_cols=129  Identities=16%  Similarity=0.234  Sum_probs=111.2

Q ss_pred             HHHHHHHhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEec
Q 014778          280 LRELQVATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMT  356 (419)
Q Consensus       280 ~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~  356 (419)
                      +.++....++|...++||+|+||+||+|+.. +++.||+|+++...  .....+.+.+|+.++..++|||||++++++.+
T Consensus        61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~  140 (410)
T 3v8s_A           61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  140 (410)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence            3445556788999999999999999999975 68999999995422  12233458899999999999999999999999


Q ss_pred             CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          357 PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       357 ~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .+..++||||+++|+|.++++..        .+++..+..++.||+.||+|||+.   +||||
T Consensus       141 ~~~~~lV~E~~~gg~L~~~l~~~--------~~~e~~~~~~~~qi~~aL~~LH~~---givHr  192 (410)
T 3v8s_A          141 DRYLYMVMEYMPGGDLVNLMSNY--------DVPEKWARFYTAEVVLALDAIHSM---GFIHR  192 (410)
T ss_dssp             SSEEEEEECCCTTEEHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             CCEEEEEEeCCCCCcHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CeEec
Confidence            99999999999999999999754        477888899999999999999999   99998

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.78  E-value=4.5e-19  Score=176.73  Aligned_cols=126  Identities=20%  Similarity=0.294  Sum_probs=109.4

Q ss_pred             HHHHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          283 LQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       283 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      ++...++|...+.||+|+||.||+|.+.++..||||+++...  ...++|.+|+.+|++++|||||++++++. .+..++
T Consensus       183 ~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~l  259 (454)
T 1qcf_A          183 WEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS--MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYI  259 (454)
T ss_dssp             SBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS--BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEE
T ss_pred             eeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC--ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEE
Confidence            344567788889999999999999999888899999996432  34678999999999999999999999986 567899


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||+++|+|.++++....     ..+++.+++.++.||+.||+|||+.   +|+||
T Consensus       260 v~e~~~~g~L~~~l~~~~~-----~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHr  308 (454)
T 1qcf_A          260 ITEFMAKGSLLDFLKSDEG-----SKQPLPKLIDFSAQIAEGMAFIEQR---NYIHR  308 (454)
T ss_dssp             EECCCTTCBHHHHHHSHHH-----HTCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEeecCCCcHHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CccCC
Confidence            9999999999999986432     1467788899999999999999999   99998

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.78  E-value=6.9e-19  Score=164.29  Aligned_cols=126  Identities=17%  Similarity=0.218  Sum_probs=109.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +.|...+.||+|+||.||++... ++..||+|++.........+.+.+|++++++++||||+++++++.+.+..++||||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  101 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET  101 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence            46777899999999999999974 68999999997655555567899999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.+++......   ...+++..+..++.|+++||+|||+.   +|+||
T Consensus       102 ~~~~~L~~~l~~~~~~---~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~  148 (285)
T 3is5_A          102 CEGGELLERIVSAQAR---GKALSEGYVAELMKQMMNALAYFHSQ---HVVHK  148 (285)
T ss_dssp             CSCCBHHHHHHHHHHH---TCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             CCCCcHHHHHHhhhhc---ccCCCHHHHHHHHHHHHHHHHHHHhC---CEEEC
Confidence            9999999998653211   12588889999999999999999999   99997

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.78  E-value=3.3e-19  Score=168.58  Aligned_cols=131  Identities=18%  Similarity=0.264  Sum_probs=109.8

Q ss_pred             HHHHHHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc
Q 014778          281 RELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE  359 (419)
Q Consensus       281 ~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  359 (419)
                      +++....++|...+.||+|+||.||+|+. +|+.||||.+..... ....++|.+|++++++++||||+++++++...+.
T Consensus        30 ~~~~i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  108 (309)
T 3p86_A           30 DDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPN  108 (309)
T ss_dssp             --CBCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTC
T ss_pred             ccccCChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCc
Confidence            33344566788889999999999999987 588999999864332 2224579999999999999999999999999999


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccc--eecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSI--LLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~--IiHR  419 (419)
                      .++||||+++|+|.++++....    ...+++..+..++.|+++||+|||+.   +  |+||
T Consensus       109 ~~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~  163 (309)
T 3p86_A          109 LSIVTEYLSRGSLYRLLHKSGA----REQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHR  163 (309)
T ss_dssp             CEEEEECCTTCBHHHHHHSTTH----HHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCT
T ss_pred             eEEEEecCCCCcHHHHHhhcCC----CCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECC
Confidence            9999999999999999987531    11378889999999999999999988   6  9997

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.78  E-value=6.9e-19  Score=164.57  Aligned_cols=120  Identities=14%  Similarity=0.004  Sum_probs=103.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc--cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      +.|...+.||+|+||.||+|... +|+.||||.++.....  ...+.|.+|+..+.+++||||+++++++...+..++||
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  110 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA  110 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence            45777899999999999999975 5899999999654322  12367999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.++++..         ....++..++.|++.||+|||+.   +|+||
T Consensus       111 e~~~g~~L~~~l~~~---------~~~~~~~~i~~ql~~aL~~lH~~---givH~  153 (286)
T 3uqc_A          111 EWIRGGSLQEVADTS---------PSPVGAIRAMQSLAAAADAAHRA---GVALS  153 (286)
T ss_dssp             ECCCEEEHHHHHTTC---------CCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             EecCCCCHHHHHhcC---------CChHHHHHHHHHHHHHHHHHHHC---CCccC
Confidence            999999999999642         22345788999999999999999   99998

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.78  E-value=8.2e-19  Score=166.57  Aligned_cols=123  Identities=21%  Similarity=0.297  Sum_probs=108.4

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      .++|...+.||+|+||.||+++.. +|+.||+|+++...  .....+.+.+|..+++.++||||+++++++.+.+..++|
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv   84 (318)
T 1fot_A            5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI   84 (318)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence            356788899999999999999974 79999999996432  223456788999999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.++++...       .+++..+..++.||+.||+|||+.   +|+||
T Consensus        85 ~e~~~gg~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHr  130 (318)
T 1fot_A           85 MDYIEGGELFSLLRKSQ-------RFPNPVAKFYAAEVCLALEYLHSK---DIIYR  130 (318)
T ss_dssp             ECCCCSCBHHHHHHHTS-------SCCHHHHHHHHHHHHHHHHHHHTT---TEECC
T ss_pred             EeCCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            99999999999998654       578888999999999999999999   99998

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.77  E-value=7.4e-19  Score=169.97  Aligned_cols=123  Identities=18%  Similarity=0.275  Sum_probs=108.6

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      .++|...+.||+|+||.||+|... +|+.||||.+..... ....+.+.+|+.++++++|||||++++++.+.+..++||
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~  107 (362)
T 2bdw_A           28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF  107 (362)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            457888899999999999999974 689999999954322 223457899999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus       108 e~~~gg~L~~~l~~~~-------~~~~~~~~~~~~qi~~al~~lH~~---~ivH~  152 (362)
T 2bdw_A          108 DLVTGGELFEDIVARE-------FYSEADASHCIQQILESIAYCHSN---GIVHR  152 (362)
T ss_dssp             CCCCSCBHHHHHTTCS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCC
T ss_pred             ecCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEec
Confidence            9999999999998654       588899999999999999999999   99998

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.77  E-value=7.7e-19  Score=162.19  Aligned_cols=122  Identities=21%  Similarity=0.289  Sum_probs=108.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      .++|...+.||+|+||.||+|...++..||||.++...  ...+++.+|++++.+++||||+++++++...+..++||||
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGS--MSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEY   84 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTT--BCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred             hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCC--CcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEc
Confidence            45677789999999999999999888899999996432  2456899999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.++++....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus        85 ~~~~~L~~~l~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~  128 (268)
T 3sxs_A           85 ISNGCLLNYLRSHGK------GLEPSQLLEMCYDVCEGMAFLESH---QFIHR  128 (268)
T ss_dssp             CTTCBHHHHHHHHGG------GCCHHHHHHHHHHHHHHHHHHHHT---TEEES
T ss_pred             cCCCcHHHHHHHcCC------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            999999999976431      488889999999999999999999   99997

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.77  E-value=4.3e-19  Score=163.84  Aligned_cols=125  Identities=20%  Similarity=0.279  Sum_probs=106.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecC--CceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP--TERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lv~  364 (419)
                      ++|...+.||+|+||.||+|+.. ++.||||.++... .....+.|.+|+.++++++||||+++++++.+.  +..++||
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (271)
T 3kmu_A           10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT   88 (271)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred             HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence            46777899999999999999985 8899999996433 222345799999999999999999999999887  6789999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.++++....     ..+++.++..++.|+++||+|||+. .++|+||
T Consensus        89 e~~~~~~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~-~~~i~H~  137 (271)
T 3kmu_A           89 HWMPYGSLYNVLHEGTN-----FVVDQSQAVKFALDMARGMAFLHTL-EPLIPRH  137 (271)
T ss_dssp             ECCTTCBHHHHHHSCSS-----CCCCHHHHHHHHHHHHHHHHHHTTS-SSCCTTC
T ss_pred             cccCCCcHHHHHhhccc-----CCCCHHHHHHHHHHHHHHHHHHhcC-CCceecC
Confidence            99999999999987532     1478899999999999999999987 2239997

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.77  E-value=1.1e-18  Score=166.02  Aligned_cols=121  Identities=18%  Similarity=0.278  Sum_probs=106.8

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +.|...+.||+|+||.||+|... +++.||+|.+....  .....+.+|+.++..++||||+++++++.+.+..++||||
T Consensus         5 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~--~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~   82 (321)
T 1tki_A            5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG--TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT--HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             hceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc--ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence            56777899999999999999975 68899999986332  2345689999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.+++.....      .+++.++..++.||+.||+|||+.   +|+||
T Consensus        83 ~~g~~L~~~l~~~~~------~~~~~~~~~i~~qi~~al~~lH~~---givH~  126 (321)
T 1tki_A           83 ISGLDIFERINTSAF------ELNEREIVSYVHQVCEALQFLHSH---NIGHF  126 (321)
T ss_dssp             CCCCBHHHHHTSSSC------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             CCCCCHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---CCCcC
Confidence            999999999976431      588899999999999999999999   99998

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.77  E-value=2.6e-19  Score=175.82  Aligned_cols=132  Identities=17%  Similarity=0.234  Sum_probs=112.9

Q ss_pred             cHHHHHHHhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEe
Q 014778          279 SLRELQVATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCM  355 (419)
Q Consensus       279 ~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~  355 (419)
                      .+.+.....++|...++||+|+||+||+++.. +|+.||||+++...  .....+.+.+|..++..++||||+++++++.
T Consensus        52 ~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  131 (412)
T 2vd5_A           52 RLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQ  131 (412)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEe
Confidence            44555566789999999999999999999974 79999999995321  1122345889999999999999999999999


Q ss_pred             cCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          356 TPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       356 ~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +.+..++||||+++|+|.+++++...      .+++..+..++.||+.||+|||+.   +||||
T Consensus       132 ~~~~~~lVmE~~~gg~L~~~l~~~~~------~l~~~~~~~~~~qi~~aL~~LH~~---giiHr  186 (412)
T 2vd5_A          132 DENYLYLVMEYYVGGDLLTLLSKFGE------RIPAEMARFYLAEIVMAIDSVHRL---GYVHR  186 (412)
T ss_dssp             CSSEEEEEECCCCSCBHHHHHHHHSS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             eCCEEEEEEcCCCCCcHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            99999999999999999999975321      578888999999999999999999   99998

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.77  E-value=5.4e-19  Score=170.18  Aligned_cols=126  Identities=14%  Similarity=0.200  Sum_probs=107.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc----cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER----TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      +.|...+.||+|+||.||+|... +|+.||||+++...    .....+.+.+|+.++..++||||+++++++.+.+..++
T Consensus        24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l  103 (351)
T 3c0i_A           24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM  103 (351)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence            46788899999999999999974 78999999985322    11235689999999999999999999999999999999


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||+++|+|.+++.....   ....+++..+..++.||++||+|||+.   +|+||
T Consensus       104 v~e~~~g~~L~~~l~~~~~---~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHr  154 (351)
T 3c0i_A          104 VFEFMDGADLCFEIVKRAD---AGFVYSEAVASHYMRQILEALRYCHDN---NIIHR  154 (351)
T ss_dssp             EEECCSSCBHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEeCCCCCCHHHHHHHhcc---cCCCCCHHHHHHHHHHHHHHHHHHHHC---Cceec
Confidence            9999999999988865321   112478889999999999999999999   99998

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.77  E-value=8.8e-19  Score=170.49  Aligned_cols=122  Identities=17%  Similarity=0.278  Sum_probs=108.6

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...+.||+|+||.||++... +++.||+|.+....  .....+.+.+|+.++..++|||||++++++.+.+..++||
T Consensus        15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~   94 (384)
T 4fr4_A           15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV   94 (384)
T ss_dssp             GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            56788899999999999999974 68999999985432  2334568999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++..+..++.||+.||+|||+.   +|+||
T Consensus        95 e~~~gg~L~~~l~~~~-------~l~~~~~~~~~~qi~~aL~~LH~~---givHr  139 (384)
T 4fr4_A           95 DLLLGGDLRYHLQQNV-------HFKEETVKLFICELVMALDYLQNQ---RIIHR  139 (384)
T ss_dssp             CCCTTEEHHHHHHTTC-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             ecCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Cceec
Confidence            9999999999998754       588889999999999999999999   99998

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.77  E-value=5.9e-19  Score=177.73  Aligned_cols=124  Identities=23%  Similarity=0.365  Sum_probs=109.1

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ..++|...+.||+|+||.||+|.+. ++..||||.++...  ...++|.+|+.+|++++|||||+++++|...+..++||
T Consensus       218 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~  295 (495)
T 1opk_A          218 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT--MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIT  295 (495)
T ss_dssp             CGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS--SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEE
T ss_pred             CHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc--cchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEE
Confidence            4566788899999999999999986 48899999996432  34678999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.++++....     ..+++..+..++.||+.||+|||+.   +|+||
T Consensus       296 E~~~~g~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHr  342 (495)
T 1opk_A          296 EFMTYGNLLDYLRECNR-----QEVSAVVLLYMATQISSAMEYLEKK---NFIHR  342 (495)
T ss_dssp             ECCTTCBHHHHHHHSCT-----TTSCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EccCCCCHHHHHHhcCc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            99999999999975321     1478888999999999999999999   99998

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.77  E-value=6.6e-19  Score=167.71  Aligned_cols=131  Identities=26%  Similarity=0.386  Sum_probs=109.3

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEe------CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRL------TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE  359 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  359 (419)
                      ..++|...+.||+|+||.||+|+.      .+++.||||.+..........++.+|+.++.+++||||+++++++...+.
T Consensus        28 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  107 (327)
T 2yfx_A           28 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP  107 (327)
T ss_dssp             CGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             ChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCC
Confidence            346788889999999999999984      25778999999644333445679999999999999999999999999999


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++||||+++|+|.+++............+++.++..++.|++.||+|||+.   +|+||
T Consensus       108 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~  164 (327)
T 2yfx_A          108 RFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHR  164 (327)
T ss_dssp             CEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             cEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecC
Confidence            9999999999999999986543333334688899999999999999999999   99997

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.77  E-value=7.2e-19  Score=166.11  Aligned_cols=131  Identities=24%  Similarity=0.306  Sum_probs=109.2

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEe------CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRL------TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE  359 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  359 (419)
                      ..++|...+.||+|+||.||+|..      .+++.||||.++........+.+.+|++++++++||||+++++++...+.
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  100 (314)
T 2ivs_A           21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP  100 (314)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred             chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc
Confidence            356777889999999999999985      24578999999654433345679999999999999999999999999999


Q ss_pred             eeEEeccCCCCChhhhhcCCccc-----------------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIV-----------------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~-----------------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++||||+++|+|.+++......                 ......+++.++..++.||++||+|||+.   +|+||
T Consensus       101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~  174 (314)
T 2ivs_A          101 LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVHR  174 (314)
T ss_dssp             CEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             eEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCccc
Confidence            99999999999999999864321                 00123488899999999999999999999   99997

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.77  E-value=1.3e-18  Score=170.22  Aligned_cols=125  Identities=18%  Similarity=0.250  Sum_probs=108.5

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC--ceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT--ERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--~~~lv~  364 (419)
                      +.|...+.||+|+||.||+|... +|+.||||+++........+.+.+|++++++++||||+++++++...+  ..++||
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~   88 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence            35777799999999999999975 589999999976554555678899999999999999999999998765  679999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.++++.....    ..+++.++..++.||+.||+|||+.   +|+||
T Consensus        89 e~~~~g~L~~~l~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~  136 (396)
T 4eut_A           89 EFCPCGSLYTVLEEPSNA----YGLPESEFLIVLRDVVGGMNHLREN---GIVHR  136 (396)
T ss_dssp             CCCTTEEHHHHTTSGGGT----TCCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             ecCCCCCHHHHHHhhhcc----cCCCHHHHHHHHHHHHHHHHHHHHC---CEEEC
Confidence            999999999999875421    1388899999999999999999999   99998

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.77  E-value=9.2e-19  Score=164.27  Aligned_cols=122  Identities=18%  Similarity=0.200  Sum_probs=106.6

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      +.|...+.||+|+||.||+|... +++.||+|.+.....  ....+.|.+|+..+.+++||||+++++++...+..++||
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   90 (294)
T 4eqm_A           11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVM   90 (294)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEE
Confidence            45777899999999999999964 689999999843222  122457899999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.|++.||+|||+.   +|+||
T Consensus        91 e~~~g~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~  135 (294)
T 4eqm_A           91 EYIEGPTLSEYIESHG-------PLSVDTAINFTNQILDGIKHAHDM---RIVHR  135 (294)
T ss_dssp             ECCCSCBHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             eCCCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            9999999999997643       588889999999999999999999   99997

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.77  E-value=5e-19  Score=167.70  Aligned_cols=132  Identities=27%  Similarity=0.440  Sum_probs=88.6

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN  149 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~  149 (419)
                      .++.|+|++|.++|.+|..++.++ |++|+|++|.+++.+|..+..+++|+.|+|++|++++.+|. +..+++|+.|+|+
T Consensus       175 ~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls  252 (313)
T 1ogq_A          175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLR  252 (313)
T ss_dssp             TCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECC
T ss_pred             cCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECc
Confidence            345555555555555555555554 55555555555555555566666666666666666655554 6667777777777


Q ss_pred             cCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCCC
Q 014778          150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       150 ~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~  203 (419)
                      +|+++|.+|..+..+++|+.|++++|+++|.+|....+..++.+++.+|+..+.
T Consensus       253 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             SSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEES
T ss_pred             CCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccC
Confidence            777777777778788888888888888888788777777777788888875554

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.77  E-value=1.1e-18  Score=173.75  Aligned_cols=123  Identities=22%  Similarity=0.357  Sum_probs=106.8

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC-ceeEE
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT-ERLLV  363 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-~~~lv  363 (419)
                      ...++|...+.||+|+||.||+|.+. |+.||||.++...   ..+.|.+|+.+|++++|||||++++++...+ ..++|
T Consensus       190 i~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv  265 (450)
T 1k9a_A          190 LNMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA---TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIV  265 (450)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT---TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEE
T ss_pred             cChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch---HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEE
Confidence            34567888899999999999999985 7899999996532   4568999999999999999999999988765 68999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.++++....     ..+++..+..++.||++||+|||+.   +|+||
T Consensus       266 ~e~~~~g~L~~~l~~~~~-----~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHr  313 (450)
T 1k9a_A          266 TEYMAKGSLVDYLRSRGR-----SVLGGDCLLKFSLDVCEAMEYLEGN---NFVHR  313 (450)
T ss_dssp             EECCTTCBHHHHHHHHCT-----TTCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEecCCCcHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCC
Confidence            999999999999986431     1367888999999999999999999   99998

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.77  E-value=8.5e-19  Score=174.61  Aligned_cols=125  Identities=18%  Similarity=0.320  Sum_probs=108.1

Q ss_pred             HHHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          284 QVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       284 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      +...++|...+.||+|+||.||+|.+.++..||||.++...  ...++|.+|+++|++++||||+++++++.+ +..++|
T Consensus       180 ~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv  256 (452)
T 1fmk_A          180 EIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT--MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIV  256 (452)
T ss_dssp             BCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS--SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEE
T ss_pred             ccChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC--CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEE
Confidence            33456788889999999999999999877889999996432  245689999999999999999999999976 678999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.++++....     ..+++.++..++.||+.||+|||+.   +|+||
T Consensus       257 ~e~~~~gsL~~~l~~~~~-----~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHr  304 (452)
T 1fmk_A          257 TEYMSKGSLLDFLKGETG-----KYLRLPQLVDMAAQIASGMAYVERM---NYVHR  304 (452)
T ss_dssp             ECCCTTCBHHHHHSHHHH-----TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             ehhhcCCCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCC
Confidence            999999999999975321     1478889999999999999999999   99998

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.77  E-value=8.9e-19  Score=168.76  Aligned_cols=124  Identities=27%  Similarity=0.356  Sum_probs=108.0

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCcee
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~  361 (419)
                      ..++|...++||+|+||.||+|+.. +|+.||||+++...  .....+.+.+|..++..+ +||||+++++++.+.+..+
T Consensus        21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~  100 (353)
T 3txo_A           21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF  100 (353)
T ss_dssp             --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence            3567888999999999999999974 68999999996432  223456788999999988 7999999999999999999


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++|+|.++++...       .+++.++..++.||+.||+|||+.   +|+||
T Consensus       101 lv~E~~~gg~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---givHr  148 (353)
T 3txo_A          101 FVMEFVNGGDLMFHIQKSR-------RFDEARARFYAAEIISALMFLHDK---GIIYR  148 (353)
T ss_dssp             EEEECCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCBCC
T ss_pred             EEEeCCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCccc
Confidence            9999999999999997654       588899999999999999999999   99998

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.77  E-value=1.2e-18  Score=167.58  Aligned_cols=122  Identities=19%  Similarity=0.257  Sum_probs=108.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...+.||+|+||.||+++.. +|+.||||+++...  .....+.+.+|+.++..++||||+++++++.+.+..++||
T Consensus        41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  120 (350)
T 1rdq_E           41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence            46778899999999999999975 69999999996432  2234567899999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus       121 e~~~gg~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHr  165 (350)
T 1rdq_E          121 EYVAGGEMFSHLRRIG-------RFSEPHARFYAAQIVLTFEYLHSL---DLIYR  165 (350)
T ss_dssp             ECCTTCBHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             cCCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            9999999999998643       578889999999999999999999   99998

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.76  E-value=1.5e-18  Score=164.27  Aligned_cols=123  Identities=18%  Similarity=0.281  Sum_probs=104.8

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEcccccccc-CHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQG-GELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~-~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .+.|...+.||+|+||+||+|...+|+.||||+++...... ....+.+|++++++++||||+++++++.+++..++|||
T Consensus        20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   99 (311)
T 3niz_A           20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE   99 (311)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred             HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence            35677789999999999999999889999999996443222 24678999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++ +|.+++.....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus       100 ~~~~-~l~~~~~~~~~------~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~  143 (311)
T 3niz_A          100 FMEK-DLKKVLDENKT------GLQDSQIKIYLYQLLRGVAHCHQH---RILHR  143 (311)
T ss_dssp             CCSE-EHHHHHHTCTT------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             CCCC-CHHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            9985 88888876432      478889999999999999999999   99998

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.76  E-value=1.6e-18  Score=160.62  Aligned_cols=123  Identities=15%  Similarity=0.179  Sum_probs=109.2

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .++|...+.||+|+||.||+|... +++.||||.++........+.+.+|+.+++.++||||+++++++.+.+..++|+|
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   85 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence            356888899999999999999975 7899999999654443445689999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++....       .+++.++..++.|++.||+|||+.   +|+||
T Consensus        86 ~~~~~~L~~~l~~~~-------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  129 (276)
T 2yex_A           86 YCSGGELFDRIEPDI-------GMPEPDAQRFFHQLMAGVVYLHGI---GITHR  129 (276)
T ss_dssp             CCTTEEGGGGSBTTT-------BCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             ecCCCcHHHHHhhcc-------CCCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            999999999997653       578889999999999999999999   99997

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.76  E-value=1.2e-18  Score=167.72  Aligned_cols=120  Identities=22%  Similarity=0.295  Sum_probs=101.0

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .+.|...+.||+|+||.||+|+.. +++.||||+++...   ..+.+.+|++++.+++||||+++++++...+..++|||
T Consensus        52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~---~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  128 (349)
T 2w4o_A           52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV---DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE  128 (349)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch---hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence            456788899999999999999975 58899999996432   34568899999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus       129 ~~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~  172 (349)
T 2w4o_A          129 LVTGGELFDRIVEKG-------YYSERDAADAVKQILEAVAYLHEN---GIVHR  172 (349)
T ss_dssp             CCCSCBHHHHHTTCS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             eCCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEec
Confidence            999999999998654       578889999999999999999999   99997

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.76  E-value=7e-19  Score=164.91  Aligned_cols=122  Identities=20%  Similarity=0.401  Sum_probs=104.5

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-----CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecC--Cce
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-----TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP--TER  360 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~  360 (419)
                      ++|...+.||+|+||.||+|++     .+++.||||++... .....+.|.+|++++.+++||||+++++++...  ...
T Consensus        10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   88 (295)
T 3ugc_A           10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS-TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL   88 (295)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCC-CHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred             HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccC-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence            4677789999999999999985     26889999999643 222346799999999999999999999999664  458


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++|+|.+++.....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus        89 ~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~  138 (295)
T 3ugc_A           89 KLIMEYLPYGSLRDYLQKHKE------RIDHIKLLQYTSQICKGMEYLGTK---RYIHR  138 (295)
T ss_dssp             EEEEECCTTCBHHHHHHHCGG------GCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEEEEeCCCCCHHHHHHhccc------ccCHHHHHHHHHHHHHHHHHHhcC---CcccC
Confidence            999999999999999986532      488889999999999999999999   99997

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.76  E-value=7.7e-19  Score=167.42  Aligned_cols=123  Identities=19%  Similarity=0.264  Sum_probs=101.8

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe----CCCCEEEEEEcccccc---ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL----TDGSLVAVKRLKEERT---QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE  359 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  359 (419)
                      .++|...+.||+|+||.||+++.    .+|+.||+|+++....   ......+.+|+.++..++||||+++++++...+.
T Consensus        16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   95 (327)
T 3a62_A           16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK   95 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred             HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence            35688889999999999999996    4789999999964321   1234568899999999999999999999999999


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++||||+++|+|.+++....       .+++..+..++.||+.||+|||+.   +|+||
T Consensus        96 ~~lv~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~al~~lH~~---~ivH~  145 (327)
T 3a62_A           96 LYLILEYLSGGELFMQLEREG-------IFMEDTACFYLAEISMALGHLHQK---GIIYR  145 (327)
T ss_dssp             EEEEEECCTTEEHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             EEEEEeCCCCCcHHHHHHhCC-------CCCHHHHHHHHHHHHHHHHHHHhC---CEEcc
Confidence            999999999999999997543       577888999999999999999999   99998

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.76  E-value=2.2e-18  Score=163.64  Aligned_cols=122  Identities=19%  Similarity=0.281  Sum_probs=108.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc-----cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCcee
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ-----GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-----~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  361 (419)
                      +.|...+.||+|+||.||+|... +|+.||||.++.....     ...+.+.+|+.++.+++||||+++++++.+.+..+
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   91 (321)
T 2a2a_A           12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV   91 (321)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence            46778899999999999999975 6899999999643221     13568999999999999999999999999999999


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++|+|.+++....       .+++.++..++.|++.||+|||+.   +|+||
T Consensus        92 lv~e~~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~  139 (321)
T 2a2a_A           92 LILELVSGGELFDFLAQKE-------SLSEEEATSFIKQILDGVNYLHTK---KIAHF  139 (321)
T ss_dssp             EEECCCCSCBHHHHHHTCS-------CEEHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EEEEcCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            9999999999999998653       588899999999999999999999   99997

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.76  E-value=5.4e-18  Score=157.05  Aligned_cols=134  Identities=25%  Similarity=0.279  Sum_probs=96.4

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN  149 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~  149 (419)
                      .++.|+|++|++++..+..|.++++|++|+|++|.++...+..|..+++|++|++++|++++..+..+.++++|+.|+|+
T Consensus        38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            46777777777776666677778888888888888774333445677888888888888775555566777788888888


Q ss_pred             cCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCCC
Q 014778          150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       150 ~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~~  203 (419)
                      +|++++..|..|..+++|+.|++++|++++..+. ...+..++.+++++|.+...
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  172 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV  172 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence            8887766666677777888888888877765553 45566777777777766543

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.76  E-value=1.4e-18  Score=167.86  Aligned_cols=121  Identities=21%  Similarity=0.238  Sum_probs=107.5

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .+.|...+.||+|+||.||++... +++.||||++....  ...+.+.+|+.+++.++||||+++++++.+.+..++|||
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e   96 (361)
T 3uc3_A           19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA--AIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIME   96 (361)
T ss_dssp             TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST--TSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc--cccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEE
Confidence            356778899999999999999975 78999999995432  234578999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++....       .+++.++..++.|++.||+|||+.   +|+||
T Consensus        97 ~~~~~~L~~~l~~~~-------~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~  140 (361)
T 3uc3_A           97 YASGGELYERICNAG-------RFSEDEARFFFQQLLSGVSYCHSM---QICHR  140 (361)
T ss_dssp             CCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCSC
T ss_pred             eCCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            999999999997543       588889999999999999999999   99998

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.76  E-value=1.9e-18  Score=168.43  Aligned_cols=123  Identities=16%  Similarity=0.221  Sum_probs=107.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .+.|...+.||+|+||.||+|... +|+.||+|.+.... ......+.+|++++..++||||+++++++.+.+..++|||
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E  128 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY-PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILE  128 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccc-hhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEE
Confidence            356888899999999999999974 68999999985432 2234578999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++.....      .+++.++..++.||+.||+|||+.   +|+||
T Consensus       129 ~~~gg~L~~~l~~~~~------~l~~~~~~~i~~qi~~aL~~LH~~---givHr  173 (387)
T 1kob_A          129 FLSGGELFDRIAAEDY------KMSEAEVINYMRQACEGLKHMHEH---SIVHL  173 (387)
T ss_dssp             CCCCCBHHHHTTCTTC------CBCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             cCCCCcHHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHHhC---Ceeec
Confidence            9999999999976431      588899999999999999999999   99998

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.76  E-value=7.2e-19  Score=168.52  Aligned_cols=134  Identities=21%  Similarity=0.352  Sum_probs=108.6

Q ss_pred             HHHHhhCCCCCCeeCcCCceEEEEEEe------CCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEe
Q 014778          283 LQVATDNFSNRNILGRGGFGKVYKGRL------TDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCM  355 (419)
Q Consensus       283 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~  355 (419)
                      ++...++|...+.||+|+||.||+|..      .++..||||.++........+.+.+|+.++.++ +||||+++++++.
T Consensus        40 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~  119 (344)
T 1rjb_A           40 WEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACT  119 (344)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe
Confidence            344567888899999999999999996      245689999997544444457899999999999 9999999999999


Q ss_pred             cCCceeEEeccCCCCChhhhhcCCcccc----------------CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          356 TPTERLLVYPFMVNGSVASCLRGMFIVS----------------GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       356 ~~~~~~lv~e~~~~GsL~~~L~~~~~~~----------------~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..+..++||||+++|+|.+++.......                .....+++.++..++.||+.||+|||+.   +|+||
T Consensus       120 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~  196 (344)
T 1rjb_A          120 LSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHR  196 (344)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEET
T ss_pred             eCCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            9999999999999999999998654210                0112478899999999999999999999   99997

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.76  E-value=1.8e-18  Score=162.56  Aligned_cols=123  Identities=22%  Similarity=0.323  Sum_probs=103.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-----CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecC--Cce
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-----TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP--TER  360 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~  360 (419)
                      ..|...+.||+|+||.||+|++     .+++.||||+++........+.+.+|++++.+++||||+++++++...  ...
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  100 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI  100 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence            3466778999999999999984     368899999997555445567899999999999999999999999886  568


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++|+|.+++.....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus       101 ~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  150 (302)
T 4e5w_A          101 KLIMEFLPSGSLKEYLPKNKN------KINLKQQLKYAVQICKGMDYLGSR---QYVHR  150 (302)
T ss_dssp             EEEEECCTTCBHHHHHHHHTT------TCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEEEEeCCCCcHHHHHHhccc------cCCHHHHHHHHHHHHHHHHHhhcC---CcccC
Confidence            999999999999999964321      478889999999999999999999   99997

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.76  E-value=1.1e-18  Score=169.32  Aligned_cols=118  Identities=20%  Similarity=0.288  Sum_probs=98.4

Q ss_pred             CCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCC
Q 014778          292 NRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNG  370 (419)
Q Consensus       292 ~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~G  370 (419)
                      ..+.||+|+||.||+|.. .+|+.||+|+++... ....+.|.+|++++.+++||||+++++++.+.+..++||||+++|
T Consensus        93 ~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~  171 (373)
T 2x4f_A           93 KTEILGGGRFGQVHKCEETATGLKLAAKIIKTRG-MKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG  171 (373)
T ss_dssp             EEEECC-----CEEEEEETTTCCEEEEEEEECCS-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred             cceEEecCcCEEEEEEEEcCCCcEEEEEEEcccc-cccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence            356899999999999996 478999999996432 223567999999999999999999999999999999999999999


Q ss_pred             ChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          371 SVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       371 sL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|.+++.....      .+++.++..++.||++||+|||+.   +|+||
T Consensus       172 ~L~~~l~~~~~------~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~  211 (373)
T 2x4f_A          172 ELFDRIIDESY------NLTELDTILFMKQICEGIRHMHQM---YILHL  211 (373)
T ss_dssp             EEHHHHHHTGG------GCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             cHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            99998875432      578888999999999999999999   99998

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.76  E-value=1.5e-18  Score=162.09  Aligned_cols=122  Identities=25%  Similarity=0.391  Sum_probs=106.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CC-------CEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DG-------SLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE  359 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g-------~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  359 (419)
                      ++|...+.||+|+||.||+|... ++       ..||+|.+... .....+.|.+|+.++++++||||+++++++..++.
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   86 (289)
T 4fvq_A            8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKA-HRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE   86 (289)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGG-GGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred             hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccc-cHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence            46777899999999999999864 33       47999999543 23345689999999999999999999999999999


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++||||+++|+|.+++.....      .+++..+..++.||++||+|||+.   +|+||
T Consensus        87 ~~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~  137 (289)
T 4fvq_A           87 NILVQEFVKFGSLDTYLKKNKN------CINILWKLEVAKQLAAAMHFLEEN---TLIHG  137 (289)
T ss_dssp             CEEEEECCTTCBHHHHHHHTGG------GCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             CEEEEECCCCCCHHHHHHhCCC------CCCHHHHHHHHHHHHHHHHHHhhC---CeECC
Confidence            9999999999999999986532      478888999999999999999999   99997

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.76  E-value=2.1e-18  Score=158.99  Aligned_cols=122  Identities=22%  Similarity=0.356  Sum_probs=108.2

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      .++|...+.||+|+||.||+|...+++.||+|.+....  ...+++.+|++++.+++||||+++++++...+..++||||
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (267)
T 3t9t_A            7 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA--MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEF   84 (267)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTT--BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECC
T ss_pred             hhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccC--CCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeC
Confidence            35677789999999999999998888899999996432  2356899999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.++++....      .+++..+..++.|+++||+|||+.   +|+||
T Consensus        85 ~~~~~L~~~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  128 (267)
T 3t9t_A           85 MEHGCLSDYLRTQRG------LFAAETLLGMCLDVCEGMAYLEEA---CVIHR  128 (267)
T ss_dssp             CTTCBHHHHHHHTTT------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             CCCCcHHHHHhhCcc------cCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            999999999976432      478888999999999999999999   99997

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.76  E-value=2e-18  Score=160.17  Aligned_cols=122  Identities=16%  Similarity=0.202  Sum_probs=108.0

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .+.|...+.||+|+||.||+|... ++..||+|++.... ....+.+.+|++++.+++||||+++++++.+.+..++|||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   86 (277)
T 3f3z_A            8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYF-VEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVME   86 (277)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGG-CSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhc-cchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEe
Confidence            346788899999999999999975 57899999995432 3446789999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++....       .+++.++..++.|++.||+|||+.   +|+||
T Consensus        87 ~~~~~~L~~~~~~~~-------~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~  130 (277)
T 3f3z_A           87 LCTGGELFERVVHKR-------VFRESDAARIMKDVLSAVAYCHKL---NVAHR  130 (277)
T ss_dssp             CCCSCBHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             ccCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CccCC
Confidence            999999999987643       578889999999999999999999   99997

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.76  E-value=1.1e-18  Score=167.58  Aligned_cols=125  Identities=19%  Similarity=0.318  Sum_probs=108.2

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCce
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~  360 (419)
                      ...++|...+.||+|+||.||+|+.. +|+.||||+++...  .......+..|..++..+ +||||+++++++.+.+..
T Consensus        14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~   93 (345)
T 1xjd_A           14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL   93 (345)
T ss_dssp             --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence            34578888999999999999999975 68999999996432  223456788999999876 999999999999999999


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus        94 ~lv~E~~~gg~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---~ivHr  142 (345)
T 1xjd_A           94 FFVMEYLNGGDLMYHIQSCH-------KFDLSRATFYAAEIILGLQFLHSK---GIVYR  142 (345)
T ss_dssp             EEEEECCTTCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCBCC
T ss_pred             EEEEeCCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeC
Confidence            99999999999999998643       578889999999999999999999   99998

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.76  E-value=1.9e-18  Score=163.87  Aligned_cols=128  Identities=24%  Similarity=0.358  Sum_probs=95.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .++|...+.||+|+||.||+|... +|+.||||+++........+.+.+|++++++++||||+++++++..++..++|||
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   83 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE   83 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence            456888899999999999999964 6899999999654444445689999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |++ |+|.+++...... .....+++..+..++.||+.||+|||+.   +|+||
T Consensus        84 ~~~-~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~  132 (317)
T 2pmi_A           84 FMD-NDLKKYMDSRTVG-NTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHR  132 (317)
T ss_dssp             CCC-CBHHHHHHHHHSS-SCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             ecC-CCHHHHHHhcccc-ccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeC
Confidence            998 6999998754211 1223578888999999999999999999   99998

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.76  E-value=1.4e-18  Score=166.82  Aligned_cols=122  Identities=19%  Similarity=0.240  Sum_probs=106.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc--cCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ--GGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~--~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  363 (419)
                      ++|...+.||+|+||.||+++.. +++.||+|+++.....  ...+.+.+|..++.++ +|||||++++++.+.+..++|
T Consensus         9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv   88 (345)
T 3a8x_A            9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV   88 (345)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence            46788899999999999999975 6899999999644321  2234688999999987 899999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.+++....       .+++..+..++.||+.||+|||+.   +|+||
T Consensus        89 ~e~~~gg~L~~~l~~~~-------~l~~~~~~~~~~qi~~aL~~LH~~---~ivHr  134 (345)
T 3a8x_A           89 IEYVNGGDLMFHMQRQR-------KLPEEHARFYSAEISLALNYLHER---GIIYR  134 (345)
T ss_dssp             ECCCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCBCC
T ss_pred             EeCCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Cceec
Confidence            99999999999997643       588889999999999999999999   99998

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.76  E-value=1.9e-18  Score=168.66  Aligned_cols=125  Identities=19%  Similarity=0.274  Sum_probs=108.3

Q ss_pred             hhCCCCCCeeCcC--CceEEEEEEeC-CCCEEEEEEccccccc-cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          287 TDNFSNRNILGRG--GFGKVYKGRLT-DGSLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       287 ~~~~~~~~~lG~G--~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      .++|...+.||+|  +||.||+|+.. +|+.||||+++..... ...+.+.+|+.+++.++|||||++++++.+.+..++
T Consensus        24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  103 (389)
T 3gni_B           24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV  103 (389)
T ss_dssp             GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence            3467778999999  99999999975 7999999999644322 224568889999999999999999999999999999


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||+++|+|.+++.....     ..+++..+..++.||+.||+|||+.   +|+||
T Consensus       104 v~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHr  152 (389)
T 3gni_B          104 VTSFMAYGSAKDLICTHFM-----DGMNELAIAYILQGVLKALDYIHHM---GYVHR  152 (389)
T ss_dssp             EEECCTTCBHHHHHHHTCT-----TCCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EEEccCCCCHHHHHhhhcc-----cCCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            9999999999999976421     1588889999999999999999999   99998

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.76  E-value=1.1e-18  Score=177.35  Aligned_cols=126  Identities=18%  Similarity=0.316  Sum_probs=108.8

Q ss_pred             HHHHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          283 LQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       283 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      ++...++|...+.||+|+||.||+|.+.++..||||+++...  ...++|.+|+++|++++|+|||++++++.+ +..++
T Consensus       262 ~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~l  338 (535)
T 2h8h_A          262 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT--MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYI  338 (535)
T ss_dssp             SBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS--SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEE
T ss_pred             eecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC--CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceE
Confidence            344566788889999999999999999877889999996432  245689999999999999999999999976 67899


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||+++|+|.++++....     ..+++.+++.++.||++||+|||+.   +||||
T Consensus       339 v~e~~~~gsL~~~l~~~~~-----~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHr  387 (535)
T 2h8h_A          339 VTEYMSKGSLLDFLKGETG-----KYLRLPQLVDMAAQIASGMAYVERM---NYVHR  387 (535)
T ss_dssp             EECCCTTEEHHHHHSHHHH-----TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             eeehhcCCcHHHHHhhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCC
Confidence            9999999999999975321     1478889999999999999999999   99998

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.76  E-value=2e-18  Score=178.17  Aligned_cols=115  Identities=19%  Similarity=0.271  Sum_probs=101.5

Q ss_pred             eeCcCCceEEEEEEeC---CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCCCC
Q 014778          295 ILGRGGFGKVYKGRLT---DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGS  371 (419)
Q Consensus       295 ~lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~Gs  371 (419)
                      .||+|+||.||+|.+.   ++..||||+++........++|.+|+++|++++|||||+++++|.. +..++||||+++|+
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~  421 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGP  421 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCB
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCc
Confidence            7999999999999863   4668999999765444556789999999999999999999999976 56899999999999


Q ss_pred             hhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          372 VASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       372 L~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |.++++....      .+++.++..++.||++||+|||+.   +||||
T Consensus       422 L~~~l~~~~~------~l~~~~~~~i~~qi~~~L~~LH~~---~iiHr  460 (613)
T 2ozo_A          422 LHKFLVGKRE------EIPVSNVAELLHQVSMGMKYLEEK---NFVHR  460 (613)
T ss_dssp             HHHHHTTCTT------TSCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             HHHHHhhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CEEcC
Confidence            9999976432      588899999999999999999999   99998

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.76  E-value=1.6e-18  Score=165.59  Aligned_cols=131  Identities=21%  Similarity=0.330  Sum_probs=108.2

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC--------CCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEec
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT--------DGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMT  356 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  356 (419)
                      ..++|...+.||+|+||.||+|...        ++..||||+++........+.+.+|++++.++ +||||+++++++..
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~  112 (334)
T 2pvf_A           33 PRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ  112 (334)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             CHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEcc
Confidence            3467888899999999999999862        46789999997544333456799999999999 99999999999999


Q ss_pred             CCceeEEeccCCCCChhhhhcCCcccc---------CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          357 PTERLLVYPFMVNGSVASCLRGMFIVS---------GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       357 ~~~~~lv~e~~~~GsL~~~L~~~~~~~---------~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .+..++||||+++|+|.+++.......         .....+++.++..++.||++||+|||+.   +|+||
T Consensus       113 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~  181 (334)
T 2pvf_A          113 DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHR  181 (334)
T ss_dssp             SSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             CCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCC
Confidence            999999999999999999998654210         0122478889999999999999999999   99997

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.76  E-value=2.5e-18  Score=159.98  Aligned_cols=122  Identities=20%  Similarity=0.290  Sum_probs=107.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc-----cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCcee
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ-----GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-----~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  361 (419)
                      ++|...+.||+|+||.||++... +|+.||||.++.....     ...+.+.+|+.++.+++||||+++++++...+..+
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            45777899999999999999975 6899999998543211     13578999999999999999999999999999999


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus        85 lv~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  132 (283)
T 3bhy_A           85 LILELVSGGELFDFLAEKE-------SLTEDEATQFLKQILDGVHYLHSK---RIAHF  132 (283)
T ss_dssp             EEEECCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEEeecCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CccCC
Confidence            9999999999999997543       578889999999999999999999   99997

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.76  E-value=2.4e-18  Score=160.84  Aligned_cols=122  Identities=18%  Similarity=0.293  Sum_probs=106.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ++|...+.||+|+||.||+|...+|+.||||+++.... ....+.+.+|++++++++||||+++++++...+..++||||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence            35777889999999999999998899999999964332 22346789999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++ +|.+++.....      .+++.++..++.||++||+|||+.   +|+||
T Consensus        82 ~~~-~l~~~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~  124 (288)
T 1ob3_A           82 LDQ-DLKKLLDVCEG------GLESVTAKSFLLQLLNGIAYCHDR---RVLHR  124 (288)
T ss_dssp             CSE-EHHHHHHTSTT------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             cCC-CHHHHHHhccc------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            985 99999876432      577888999999999999999999   99997

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.76  E-value=1.1e-18  Score=164.90  Aligned_cols=131  Identities=21%  Similarity=0.262  Sum_probs=109.6

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEe------CCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCC
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRL------TDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPT  358 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  358 (419)
                      ..++|...+.||+|+||.||+|+.      .+++.||||.++........+.+.+|+.++.++ +||||+++++++...+
T Consensus        21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~  100 (313)
T 1t46_A           21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG  100 (313)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence            456788889999999999999985      356799999997544333456799999999999 9999999999999999


Q ss_pred             ceeEEeccCCCCChhhhhcCCccc-----------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 ERLLVYPFMVNGSVASCLRGMFIV-----------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 ~~~lv~e~~~~GsL~~~L~~~~~~-----------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..++||||+++|+|.+++......           ......+++.++..++.|+++||+|||+.   +|+||
T Consensus       101 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~  169 (313)
T 1t46_A          101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHR  169 (313)
T ss_dssp             SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             CcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            999999999999999999865321           11122488999999999999999999999   99997

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.76  E-value=1.5e-18  Score=161.45  Aligned_cols=127  Identities=21%  Similarity=0.290  Sum_probs=108.8

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc-cccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER-TQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  363 (419)
                      .++|...+.||+|+||.||+|... +++.||||+++... ......++.+|+..+..+ +||||+++++++.+++..++|
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv   89 (289)
T 1x8b_A           10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQ   89 (289)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEE
T ss_pred             cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEE
Confidence            456888899999999999999975 79999999986432 222356789999999998 999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.+++......   ...+++.++..++.||++||+|||+.   +|+||
T Consensus        90 ~e~~~~~~L~~~l~~~~~~---~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~  139 (289)
T 1x8b_A           90 NEYCNGGSLADAISENYRI---MSYFKEAELKDLLLQVGRGLRYIHSM---SLVHM  139 (289)
T ss_dssp             EECCTTCBHHHHHHHHHHH---TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEecCCCcHHHHHHhhccc---ccCCCHHHHHHHHHHHHHHHHHHHhC---CEeec
Confidence            9999999999999864311   11578899999999999999999999   99997

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.76  E-value=1.8e-18  Score=162.40  Aligned_cols=122  Identities=18%  Similarity=0.273  Sum_probs=100.2

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccc-------------------------cCHHHHHHHHHHHh
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQ-------------------------GGELQFQTEVEMIS  340 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~-------------------------~~~~~f~~E~~~l~  340 (419)
                      .++|...+.||+|+||.||+|+. .+++.||||++......                         ...+.+.+|+++++
T Consensus        12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~   91 (298)
T 2zv2_A           12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK   91 (298)
T ss_dssp             ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred             ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence            35688889999999999999996 46899999998533211                         11246899999999


Q ss_pred             cCCCCCCcceeEEEec--CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceec
Q 014778          341 MAVHRNLLRLRGFCMT--PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLF  418 (419)
Q Consensus       341 ~l~H~niv~l~g~~~~--~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiH  418 (419)
                      +++||||+++++++.+  .+..++||||+++|+|.+++...        .+++.++..++.||++||+|||+.   +|+|
T Consensus        92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~--------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH  160 (298)
T 2zv2_A           92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLK--------PLSEDQARFYFQDLIKGIEYLHYQ---KIIH  160 (298)
T ss_dssp             TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSS--------CCCHHHHHHHHHHHHHHHHHHHHT---TEEC
T ss_pred             hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---Ceec
Confidence            9999999999999987  45789999999999998865533        588889999999999999999999   9999


Q ss_pred             C
Q 014778          419 C  419 (419)
Q Consensus       419 R  419 (419)
                      |
T Consensus       161 ~  161 (298)
T 2zv2_A          161 R  161 (298)
T ss_dssp             C
T ss_pred             c
Confidence            7

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.76  E-value=3.8e-18  Score=161.47  Aligned_cols=120  Identities=24%  Similarity=0.251  Sum_probs=104.4

Q ss_pred             CCCC-CCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhc-CCCCCCcceeEEEecCCceeEEec
Q 014778          289 NFSN-RNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISM-AVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       289 ~~~~-~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~-l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .|.. .+.||+|+||.||+|.. .+++.||||+++.. .......+.+|++++.+ .+||||+++++++.+.+..++|||
T Consensus        13 ~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e   91 (316)
T 2ac3_A           13 VYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQ-PGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFE   91 (316)
T ss_dssp             SCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECC-SSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             eEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeC-cchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEE
Confidence            4544 36799999999999995 47899999999543 23346789999999988 479999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus        92 ~~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~  135 (316)
T 2ac3_A           92 KMRGGSILSHIHKRR-------HFNELEASVVVQDVASALDFLHNK---GIAHR  135 (316)
T ss_dssp             CCTTCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             cCCCCcHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHHHhC---CceeC
Confidence            999999999997643       578889999999999999999999   99997

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.75  E-value=2.5e-18  Score=171.82  Aligned_cols=122  Identities=18%  Similarity=0.300  Sum_probs=108.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...+.||+|+||.||+|... +|+.||||+++...  .......+.+|+.+++.++||||+++++++...+..++||
T Consensus        16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~   95 (476)
T 2y94_A           16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM   95 (476)
T ss_dssp             TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            46777899999999999999975 79999999996432  2233567999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus        96 E~~~gg~L~~~l~~~~-------~l~~~~~~~i~~qi~~aL~~LH~~---givHr  140 (476)
T 2y94_A           96 EYVSGGELFDYICKNG-------RLDEKESRRLFQQILSGVDYCHRH---MVVHR  140 (476)
T ss_dssp             ECCSSEEHHHHTTSSS-------SCCHHHHHHHHHHHHHHHHHHHTT---TEECS
T ss_pred             eCCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCCcc
Confidence            9999999999998654       588899999999999999999999   99998

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.75  E-value=1.6e-18  Score=164.77  Aligned_cols=122  Identities=21%  Similarity=0.254  Sum_probs=103.8

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc----eeE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE----RLL  362 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----~~l  362 (419)
                      .++|...+.||+|+||+||+|+.. ++.||||++....  .....+.+|+.++.+++|||||++++++.....    .++
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~l   99 (322)
T 3soc_A           23 SMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQD--KQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWL   99 (322)
T ss_dssp             TEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGG--HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred             hhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCc--hHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEE
Confidence            457888899999999999999985 7899999995432  223456779999999999999999999987543    699


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhcc-------ccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSC-------VSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~-------~p~IiHR  419 (419)
                      ||||+++|+|.++++..        .+++.++..++.|+++||+|||+.+       +++|+||
T Consensus       100 v~e~~~~g~L~~~l~~~--------~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~  155 (322)
T 3soc_A          100 ITAFHEKGSLSDFLKAN--------VVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHR  155 (322)
T ss_dssp             EEECCTTCBHHHHHHHC--------CBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECS
T ss_pred             EEecCCCCCHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeC
Confidence            99999999999999764        4888899999999999999999763       5589997

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.75  E-value=4.5e-19  Score=168.26  Aligned_cols=138  Identities=20%  Similarity=0.311  Sum_probs=113.2

Q ss_pred             cHHHHHHHhhCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeE
Q 014778          279 SLRELQVATDNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG  352 (419)
Q Consensus       279 ~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g  352 (419)
                      ..+++....++|...+.||+|+||.||+|...      +++.||||.+...........|.+|+.+++.++||||+++++
T Consensus        16 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~   95 (322)
T 1p4o_A           16 VPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLG   95 (322)
T ss_dssp             CCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEE
T ss_pred             ChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEE
Confidence            33455556778888999999999999999853      367899999965433334557999999999999999999999


Q ss_pred             EEecCCceeEEeccCCCCChhhhhcCCccc---cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          353 FCMTPTERLLVYPFMVNGSVASCLRGMFIV---SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       353 ~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~---~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++.+.+..++||||+++|+|.++++.....   ......+++.++..++.||+.||+|||+.   +|+||
T Consensus        96 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~  162 (322)
T 1p4o_A           96 VVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHR  162 (322)
T ss_dssp             EECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCS
T ss_pred             EEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccC
Confidence            999999999999999999999999854311   01112467888999999999999999999   99997

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.75  E-value=7.7e-19  Score=167.57  Aligned_cols=134  Identities=24%  Similarity=0.287  Sum_probs=110.4

Q ss_pred             HHHHhhCCCCCCeeCcCCceEEEEEEeC-CC-----CEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEe
Q 014778          283 LQVATDNFSNRNILGRGGFGKVYKGRLT-DG-----SLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCM  355 (419)
Q Consensus       283 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g-----~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~  355 (419)
                      +....++|...+.||+|+||.||+|... ++     ..||||.++........+.+.+|+.++..+ +||||+++++++.
T Consensus        41 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~  120 (333)
T 2i1m_A           41 WEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACT  120 (333)
T ss_dssp             GBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             ccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe
Confidence            3445678888899999999999999963 23     489999996544333456799999999999 8999999999999


Q ss_pred             cCCceeEEeccCCCCChhhhhcCCccccC-------CCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          356 TPTERLLVYPFMVNGSVASCLRGMFIVSG-------FPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       356 ~~~~~~lv~e~~~~GsL~~~L~~~~~~~~-------~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..+..++||||+++|+|.+++........       ....+++.++..++.||+.||+|||+.   +|+||
T Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~  188 (333)
T 2i1m_A          121 HGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHR  188 (333)
T ss_dssp             SSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             cCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccC
Confidence            99999999999999999999975431100       012468889999999999999999999   99997

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.75  E-value=1.5e-18  Score=168.94  Aligned_cols=131  Identities=20%  Similarity=0.278  Sum_probs=109.5

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC--------CCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEec
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT--------DGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMT  356 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  356 (419)
                      ..+.|...+.||+|+||.||+|+..        ++..||||+++........+++.+|++++.++ +|||||++++++..
T Consensus        67 ~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~  146 (382)
T 3tt0_A           67 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ  146 (382)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             chhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeecc
Confidence            3456777899999999999999852        23579999997554444456799999999999 99999999999999


Q ss_pred             CCceeEEeccCCCCChhhhhcCCccc---------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          357 PTERLLVYPFMVNGSVASCLRGMFIV---------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       357 ~~~~~lv~e~~~~GsL~~~L~~~~~~---------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .+..++||||+++|+|.+++......         ......+++.++..++.||+.||+|||+.   +|+||
T Consensus       147 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~  215 (382)
T 3tt0_A          147 DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHR  215 (382)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             CCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecC
Confidence            99999999999999999999864311         11123589999999999999999999999   99997

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.75  E-value=4.5e-18  Score=147.27  Aligned_cols=126  Identities=29%  Similarity=0.340  Sum_probs=99.7

Q ss_pred             CCCcceeEeCCC----------CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccc
Q 014778           57 PCTWFHVTCNSE----------NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYL  126 (419)
Q Consensus        57 ~c~w~~v~c~~~----------~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~  126 (419)
                      .|.|.++.|...          ..++.|+|++|++++..+..++.+++|++|+|++|.+++..+..+..+++|+.|++++
T Consensus         6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            467999999742          3678888888888876666778888888888888888865555678888888888888


Q ss_pred             cccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCC
Q 014778          127 NNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP  182 (419)
Q Consensus       127 N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p  182 (419)
                      |++++..|..+.++++|+.|+|++|++++..+..+..+++|+.|++++|++++..|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            88886666667888888888888888886555556788888888888888888766

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.75  E-value=5.3e-18  Score=161.49  Aligned_cols=113  Identities=18%  Similarity=0.216  Sum_probs=102.0

Q ss_pred             CCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCC-CCCCcceeEEEecCCceeEEeccCCCC
Q 014778          293 RNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-HRNLLRLRGFCMTPTERLLVYPFMVNG  370 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~e~~~~G  370 (419)
                      .+.||+|+||.||+|... +++.||||++...    ....+.+|+.++..++ ||||+++++++.+....++||||+++|
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~   91 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR----MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGG   91 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG----GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSC
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChh----hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCC
Confidence            478999999999999974 6899999999532    3457889999999997 999999999999999999999999999


Q ss_pred             ChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          371 SVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       371 sL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|.+++....       .+++.++..++.||++||+|||+.   +|+||
T Consensus        92 ~L~~~l~~~~-------~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~  130 (325)
T 3kn6_A           92 ELFERIKKKK-------HFSETEASYIMRKLVSAVSHMHDV---GVVHR  130 (325)
T ss_dssp             BHHHHHHHCS-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             cHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCeec
Confidence            9999998654       588999999999999999999999   99998

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.75  E-value=1.6e-18  Score=169.29  Aligned_cols=123  Identities=18%  Similarity=0.234  Sum_probs=106.2

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~l  362 (419)
                      .++|...++||+|+||+||+++.. +++.||||+++....  ....+.+.+|..++.++ +|||||++++++.+.+..++
T Consensus        51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  130 (396)
T 4dc2_A           51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF  130 (396)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence            457888899999999999999975 688999999964332  12234588999999876 89999999999999999999


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||+++|+|.+++....       .+++..+..++.||+.||+|||+.   +||||
T Consensus       131 V~E~~~gg~L~~~l~~~~-------~l~~~~~~~~~~qi~~aL~~LH~~---givHr  177 (396)
T 4dc2_A          131 VIEYVNGGDLMFHMQRQR-------KLPEEHARFYSAEISLALNYLHER---GIIYR  177 (396)
T ss_dssp             EEECCTTCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCBCC
T ss_pred             EEEcCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CEEec
Confidence            999999999999998654       588899999999999999999999   99998

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.75  E-value=1.7e-18  Score=171.69  Aligned_cols=123  Identities=14%  Similarity=0.220  Sum_probs=106.5

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      .+.|...+.||+|+||.||+|.. .+|+.||+|.+..... ....+.+.+|+.+++.++|||||++++++.+.+..++||
T Consensus        10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~   89 (444)
T 3soa_A           10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIF   89 (444)
T ss_dssp             HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEE
Confidence            45788889999999999999996 4789999999854321 223457899999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus        90 E~~~gg~L~~~i~~~~-------~~~e~~~~~i~~qil~aL~~lH~~---givHr  134 (444)
T 3soa_A           90 DLVTGGELFEDIVARE-------YYSEADASHCIQQILEAVLHCHQM---GVVHR  134 (444)
T ss_dssp             CCCBCCBHHHHHHHCS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCC
T ss_pred             EeCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            9999999999988654       588899999999999999999999   99998

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.75  E-value=3.6e-18  Score=172.47  Aligned_cols=123  Identities=15%  Similarity=0.192  Sum_probs=105.4

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc------------cCHHHHHHHHHHHhcCCCCCCcceeEE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ------------GGELQFQTEVEMISMAVHRNLLRLRGF  353 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~------------~~~~~f~~E~~~l~~l~H~niv~l~g~  353 (419)
                      .+.|...+.||+|+||+||+|... +++.||||++......            ...+.+.+|+.++++++|||||+++++
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~  114 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV  114 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            457888899999999999999974 6889999998543211            235679999999999999999999999


Q ss_pred             EecCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          354 CMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       354 ~~~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +.+....++||||+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus       115 ~~~~~~~~lv~e~~~gg~L~~~l~~~~-------~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~  170 (504)
T 3q5i_A          115 FEDKKYFYLVTEFYEGGELFEQIINRH-------KFDECDAANIMKQILSGICYLHKH---NIVHR  170 (504)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEcCCEEEEEEecCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeC
Confidence            999999999999999999999987643       588999999999999999999999   99998

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=9.8e-18  Score=153.56  Aligned_cols=136  Identities=26%  Similarity=0.280  Sum_probs=122.5

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..+++.|+|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..+.++++|+.|+
T Consensus        58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  137 (251)
T 3m19_A           58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR  137 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence            35799999999999998888899999999999999999977777889999999999999999966666679999999999


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCCCC-CCCCccccccccccCCCCCCC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP-TNGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p-~~~~~~~~~~~~~~~n~~~~~  203 (419)
                      |++|++++..|..+..+++|+.|++++|++++.+| ....+..++.+++++|++.+.
T Consensus       138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            99999997777789999999999999999998777 356778899999999988654

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.75  E-value=1.6e-18  Score=163.88  Aligned_cols=139  Identities=22%  Similarity=0.352  Sum_probs=113.2

Q ss_pred             ccHHHHHHHhhCCCCCCeeCcCCceEEEEEEe------CCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcce
Q 014778          278 FSLRELQVATDNFSNRNILGRGGFGKVYKGRL------TDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRL  350 (419)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l  350 (419)
                      +...++....++|...+.||+|+||.||+|..      .+++.||||.++........+.+.+|++++.++ +||||+++
T Consensus        17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~   96 (316)
T 2xir_A           17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   96 (316)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence            34455566678899999999999999999984      356899999996544333456799999999999 79999999


Q ss_pred             eEEEecCC-ceeEEeccCCCCChhhhhcCCcccc---------CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          351 RGFCMTPT-ERLLVYPFMVNGSVASCLRGMFIVS---------GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       351 ~g~~~~~~-~~~lv~e~~~~GsL~~~L~~~~~~~---------~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++++...+ ..++||||+++|+|.+++.......         .....+++.++..++.|+++||+|||+.   +|+||
T Consensus        97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~  172 (316)
T 2xir_A           97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHR  172 (316)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---Ccccc
Confidence            99998765 4899999999999999998754210         0012378899999999999999999999   99997

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.75  E-value=2.7e-18  Score=159.83  Aligned_cols=124  Identities=17%  Similarity=0.223  Sum_probs=104.8

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC----CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCcee
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  361 (419)
                      ..+.|...+.||+|+||.||+|...    .+..||+|.++........+.|.+|+.++++++||||+++++++. .+..+
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~   91 (281)
T 1mp8_A           13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW   91 (281)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCE
T ss_pred             ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccE
Confidence            3456777899999999999999974    245799999865433334567999999999999999999999984 56789


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++|+|.++++....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus        92 lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~  140 (281)
T 1mp8_A           92 IIMELCTLGELRSFLQVRKY------SLDLASLILYAYQLSTALAYLESK---RFVHR  140 (281)
T ss_dssp             EEEECCTTEEHHHHHHHTTT------TSCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEEecCCCCCHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            99999999999999975431      478889999999999999999999   99997

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.75  E-value=4.6e-18  Score=157.82  Aligned_cols=124  Identities=23%  Similarity=0.338  Sum_probs=108.6

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      .++|...+.||+|+||.||+|+. .+|+.||||.+....  .....+.+.+|+.++.+++||||+++++++.+.+..++|
T Consensus        10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (278)
T 3cok_A           10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV   89 (278)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence            35688889999999999999996 579999999995432  222356799999999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.+++.....      .+++.++..++.|+++||+|||+.   +|+||
T Consensus        90 ~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~  136 (278)
T 3cok_A           90 LEMCHNGEMNRYLKNRVK------PFSENEARHFMHQIITGMLYLHSH---GILHR  136 (278)
T ss_dssp             EECCTTEEHHHHHHTCSS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EecCCCCcHHHHHhhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            999999999999986531      578889999999999999999999   99997

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.75  E-value=2.5e-18  Score=163.84  Aligned_cols=122  Identities=23%  Similarity=0.417  Sum_probs=99.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCC----EEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      ++|...+.||+|+||.||+|+.. +++    .||+|.++........++|.+|+.++++++||||++++++|.... .++
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~~~   93 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL   93 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-EEE
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-eEE
Confidence            45777899999999999999963 444    468998865544455678999999999999999999999998764 789


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+||+++|+|.++++....      .+++..+..++.||++||+|||+.   +|+||
T Consensus        94 v~e~~~~g~L~~~l~~~~~------~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~  141 (327)
T 3poz_A           94 ITQLMPFGCLLDYVREHKD------NIGSQYLLNWCVQIAKGMNYLEDR---RLVHR  141 (327)
T ss_dssp             EEECCTTCBHHHHHHHSTT------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEEecCCCcHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHhhC---CeeCC
Confidence            9999999999999986432      578889999999999999999999   99998

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.75  E-value=3.4e-18  Score=163.83  Aligned_cols=134  Identities=15%  Similarity=0.194  Sum_probs=109.5

Q ss_pred             HHHHhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc----cccCHHHHHHHHHHHhcCCCCCCcceeEEEecC
Q 014778          283 LQVATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER----TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP  357 (419)
Q Consensus       283 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~  357 (419)
                      +....+.|...+.||+|+||.||+|.. .+++.||+|++....    .....+.+.+|++++++++||||+++++++.+.
T Consensus        21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~  100 (345)
T 3hko_A           21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE  100 (345)
T ss_dssp             HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence            344566788999999999999999997 468899999985432    223356799999999999999999999999999


Q ss_pred             CceeEEeccCCCCChhhhhcCCccc---------------------------------cCCCcchhhHHHHHHHHHHHHH
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIV---------------------------------SGFPSFFSYLFFIAFVQSLIQS  404 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~---------------------------------~~~~~~~~~~~~~~i~~qia~g  404 (419)
                      +..++||||+++|+|.+++......                                 ......+++..+..++.||++|
T Consensus       101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~  180 (345)
T 3hko_A          101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA  180 (345)
T ss_dssp             SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence            9999999999999999999631100                                 0112245777888999999999


Q ss_pred             HHHhhhccccceecC
Q 014778          405 LHFAKYSCVSILLFC  419 (419)
Q Consensus       405 l~yLH~~~~p~IiHR  419 (419)
                      |+|||+.   +|+||
T Consensus       181 l~~LH~~---~ivH~  192 (345)
T 3hko_A          181 LHYLHNQ---GICHR  192 (345)
T ss_dssp             HHHHHHT---TEECC
T ss_pred             HHHHHHC---Ccccc
Confidence            9999999   99997

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.75  E-value=5.7e-18  Score=159.30  Aligned_cols=121  Identities=17%  Similarity=0.295  Sum_probs=108.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +.|...+.||+|+||.||+|.. .+++.||||.+.........+.+.+|+.++..++||||+++++++...+..++||||
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~  101 (303)
T 3a7i_A           22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEY  101 (303)
T ss_dssp             GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEe
Confidence            4577789999999999999996 468999999996554444567899999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.+++...        .+++.++..++.|++.||+|||+.   +|+||
T Consensus       102 ~~~~~L~~~~~~~--------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~  143 (303)
T 3a7i_A          102 LGGGSALDLLEPG--------PLDETQIATILREILKGLDYLHSE---KKIHR  143 (303)
T ss_dssp             CTTEEHHHHHTTS--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             CCCCcHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CCccC
Confidence            9999999999753        478889999999999999999999   99997

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.75  E-value=4.2e-18  Score=159.00  Aligned_cols=121  Identities=19%  Similarity=0.267  Sum_probs=102.9

Q ss_pred             CCCCCC-eeCcCCceEEEEEEeC---CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          289 NFSNRN-ILGRGGFGKVYKGRLT---DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       289 ~~~~~~-~lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      +|...+ .||+|+||.||+|.+.   ++..||||.++........+.+.+|++++.+++||||+++++++ ..+..++||
T Consensus        10 ~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv~   88 (287)
T 1u59_A           10 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLVM   88 (287)
T ss_dssp             GEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEEE
T ss_pred             HhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEEE
Confidence            444444 8999999999999863   57789999997543333456799999999999999999999999 456689999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++.....      .+++.++..++.|+++||+|||+.   +|+||
T Consensus        89 e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~  134 (287)
T 1u59_A           89 EMAGGGPLHKFLVGKRE------EIPVSNVAELLHQVSMGMKYLEEK---NFVHR  134 (287)
T ss_dssp             ECCTTEEHHHHHTTCTT------TSCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EeCCCCCHHHHHHhCCc------cCCHHHHHHHHHHHHHHHHHHHHC---CEeeC
Confidence            99999999999975432      588889999999999999999999   99997

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.75  E-value=4.6e-18  Score=172.77  Aligned_cols=125  Identities=21%  Similarity=0.294  Sum_probs=109.3

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      .++|...++||+|+||.||+|... +|+.||||++....  .......+.+|+.+|..++|||||++++++.+.+..++|
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  262 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV  262 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence            456888899999999999999974 79999999996432  233456789999999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.+++.....     ..+++..+..++.||+.||+|||+.   +||||
T Consensus       263 mEy~~gg~L~~~l~~~~~-----~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHr  310 (576)
T 2acx_A          263 LTLMNGGDLKFHIYHMGQ-----AGFPEARAVFYAAEICCGLEDLHRE---RIVYR  310 (576)
T ss_dssp             ECCCCSCBHHHHHHSSSS-----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EEcCCCCcHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CEecc
Confidence            999999999999986531     1488899999999999999999999   99998

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.75  E-value=4.7e-18  Score=161.23  Aligned_cols=119  Identities=21%  Similarity=0.365  Sum_probs=103.5

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-----CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecC--CceeE
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP--TERLL  362 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-----~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~l  362 (419)
                      |...+.||+|+||.||++.+.     +++.||||+++........+.|.+|++++++++||||+++++++.+.  ...++
T Consensus        33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l  112 (318)
T 3lxp_A           33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL  112 (318)
T ss_dssp             EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred             HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence            467789999999999998753     67899999997554333456799999999999999999999999874  56789


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||+++|+|.+++...        .+++.++..++.|++.||+|||+.   +|+||
T Consensus       113 v~e~~~~~~L~~~l~~~--------~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~  158 (318)
T 3lxp_A          113 VMEYVPLGSLRDYLPRH--------SIGLAQLLLFAQQICEGMAYLHAQ---HYIHR  158 (318)
T ss_dssp             EECCCTTCBHHHHGGGS--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEecccCCcHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHhC---CccCC
Confidence            99999999999999765        378889999999999999999999   99997

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.75  E-value=3.1e-18  Score=168.90  Aligned_cols=123  Identities=15%  Similarity=0.249  Sum_probs=104.1

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-------ccCHHHHHHHHHHHhcCCCCCCcceeEEEecC
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-------QGGELQFQTEVEMISMAVHRNLLRLRGFCMTP  357 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-------~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~  357 (419)
                      ..+.|...+.||+|+||.||+|... +++.||||.+.....       ......+.+|+.+|++++|||||++++++.. 
T Consensus       133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-  211 (419)
T 3i6u_A          133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA-  211 (419)
T ss_dssp             HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES-
T ss_pred             hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec-
Confidence            3567888899999999999999964 689999999854321       1112358899999999999999999999864 


Q ss_pred             CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +..++||||+++|+|.+++....       .+++.++..++.|++.||+|||+.   +|+||
T Consensus       212 ~~~~lv~e~~~~g~L~~~l~~~~-------~~~~~~~~~i~~qi~~~l~~LH~~---~ivHr  263 (419)
T 3i6u_A          212 EDYYIVLELMEGGELFDKVVGNK-------RLKEATCKLYFYQMLLAVQYLHEN---GIIHR  263 (419)
T ss_dssp             SEEEEEEECCTTCBGGGGTSSSC-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             CceEEEEEcCCCCcHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            45799999999999999987654       588899999999999999999999   99998

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.75  E-value=4.7e-18  Score=159.06  Aligned_cols=122  Identities=18%  Similarity=0.300  Sum_probs=103.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccccc-CHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQG-GELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~-~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      ++|...+.||+|+||+||+|... +|+.||||+++...... ....+.+|+.++.+++||||+++++++.+.+..++|||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   81 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence            35777889999999999999974 68999999996443222 24678999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++ ++.+++.....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus        82 ~~~~-~l~~~~~~~~~------~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~  125 (292)
T 3o0g_A           82 FCDQ-DLKKYFDSCNG------DLDPEIVKSFLFQLLKGLGFCHSR---NVLHR  125 (292)
T ss_dssp             CCSE-EHHHHHHHTTT------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             cCCC-CHHHHHHhCCC------CCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            9986 56665554221      588889999999999999999999   99997

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.75  E-value=3.7e-18  Score=158.93  Aligned_cols=123  Identities=18%  Similarity=0.275  Sum_probs=107.5

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      .++|...+.||+|+||.||+|... +|+.||+|++..... ....+.+.+|+.++.+++||||+++++++...+..++||
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   84 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   84 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence            356788899999999999999974 689999999964332 223457889999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.|++.||+|||+.   +|+||
T Consensus        85 e~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  129 (284)
T 3kk8_A           85 DLVTGGELFEDIVARE-------FYSEADASHCIQQILESIAYCHSN---GIVHR  129 (284)
T ss_dssp             CCCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             ecCCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcCcC
Confidence            9999999999887643       588889999999999999999999   99997

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.74  E-value=1.8e-18  Score=160.73  Aligned_cols=123  Identities=20%  Similarity=0.294  Sum_probs=106.5

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      ..+.|...+.||+|+||.||+|...++..||||.++...  ...+.|.+|++++.+++||||+++++++.. +..++|||
T Consensus        11 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e   87 (279)
T 1qpc_A           11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS--MSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITE   87 (279)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS--SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred             CHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCc--ccHHHHHHHHHHHHhCCCcCcceEEEEEcC-CCcEEEEe
Confidence            446788889999999999999999888899999996432  245689999999999999999999999864 56899999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++.....     ..+++.++..++.|++.||+|||+.   +|+||
T Consensus        88 ~~~~~~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~  133 (279)
T 1qpc_A           88 YMENGSLVDFLKTPSG-----IKLTINKLLDMAAQIAEGMAFIEER---NYIHR  133 (279)
T ss_dssp             CCTTCBHHHHTTSHHH-----HTCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             cCCCCCHHHHHhcCCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            9999999999976431     1478888999999999999999999   99997

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.74  E-value=2.5e-18  Score=165.61  Aligned_cols=124  Identities=19%  Similarity=0.244  Sum_probs=108.2

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCcee
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~  361 (419)
                      ..++|...+.||+|+||.||+|+.. +|+.||||+++...  .....+.+.+|..++..+ +||||+++++++.+.+..+
T Consensus        18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~   97 (353)
T 2i0e_A           18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY   97 (353)
T ss_dssp             -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred             chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence            3467888899999999999999975 58899999996432  223456788999999987 8999999999999999999


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus        98 lv~E~~~gg~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---givHr  145 (353)
T 2i0e_A           98 FVMEYVNGGDLMYHIQQVG-------RFKEPHAVFYAAEIAIGLFFLQSK---GIIYR  145 (353)
T ss_dssp             EEEECCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCBCC
T ss_pred             EEEeCCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CEEec
Confidence            9999999999999998643       588889999999999999999999   99998

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.74  E-value=2.5e-18  Score=164.30  Aligned_cols=122  Identities=25%  Similarity=0.415  Sum_probs=104.6

Q ss_pred             CCCCCCeeCcCCceEEEEEEeCC-----CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          289 NFSNRNILGRGGFGKVYKGRLTD-----GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~~-----g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      .|...+.||+|+||.||+|....     +..||||.++..........|.+|+.++.+++||||+++++++...+..++|
T Consensus        45 ~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  124 (333)
T 1mqb_A           45 CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMII  124 (333)
T ss_dssp             TEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEE
T ss_pred             HhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEEE
Confidence            45556899999999999998642     2469999996543333456799999999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.++++....      .+++.++..++.||++||+|||+.   +|+||
T Consensus       125 ~e~~~~~~L~~~l~~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~  171 (333)
T 1mqb_A          125 TEYMENGALDKFLREKDG------EFSVLQLVGMLRGIAAGMKYLANM---NYVHR  171 (333)
T ss_dssp             EECCTTEEHHHHHHHTTT------CSCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EeCCCCCcHHHHHHhCCC------CCCHHHHHHHHHHHHHHHHHHHhC---CeeCC
Confidence            999999999999975421      578889999999999999999999   99997

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.74  E-value=1.3e-18  Score=173.00  Aligned_cols=123  Identities=21%  Similarity=0.230  Sum_probs=99.2

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      .++|...+.||+|+||.||+|.. .+|+.||||+++...  .......+.+|+.++..++||||+++++++...+..++|
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  226 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV  226 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence            45688889999999999999996 478999999996432  222345688999999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhh-ccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKY-SCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~-~~~p~IiHR  419 (419)
                      |||+++|+|.+++....       .+++..+..++.||++||+|||+ .   +||||
T Consensus       227 ~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~~---giiHr  273 (446)
T 4ejn_A          227 MEYANGGELFFHLSRER-------VFSEDRARFYGAEIVSALDYLHSEK---NVVYR  273 (446)
T ss_dssp             ECCCSSCBHHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHHT---CCCCC
T ss_pred             EeeCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHhhcC---CEEEC
Confidence            99999999999997643       58888999999999999999997 7   89998

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.74  E-value=3.5e-18  Score=158.82  Aligned_cols=123  Identities=27%  Similarity=0.395  Sum_probs=107.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      .++|...+.||+|+||.||+|... +++.||||++....  .......+.+|+.++++++||||+++++++.+.+..++|
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   87 (279)
T 3fdn_A            8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI   87 (279)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence            457888899999999999999975 67899999985332  223356799999999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.+++....       .+++..+..++.|++.||+|||+.   +|+||
T Consensus        88 ~e~~~~~~l~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~  133 (279)
T 3fdn_A           88 LEYAPLGTVYRELQKLS-------KFDEQRTATYITELANALSYCHSK---RVIHR  133 (279)
T ss_dssp             ECCCTTEEHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHTT---TCEEC
T ss_pred             EecCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CEecc
Confidence            99999999999997643       578889999999999999999998   99997

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.74  E-value=2.4e-18  Score=165.02  Aligned_cols=118  Identities=16%  Similarity=0.203  Sum_probs=103.9

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEEe
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      .++|...+.||+|+||.||+|... +|+.||||.++....     .+.+|++++.++ +||||+++++++.+.+..++||
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~-----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~   95 (342)
T 2qr7_A           21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR-----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT   95 (342)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC-----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred             cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC-----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence            456888899999999999999975 689999999954321     345788888887 7999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus        96 E~~~gg~L~~~i~~~~-------~~~~~~~~~~~~qi~~al~~lH~~---givHr  140 (342)
T 2qr7_A           96 ELMKGGELLDKILRQK-------FFSEREASAVLFTITKTVEYLHAQ---GVVHR  140 (342)
T ss_dssp             CCCCSCBHHHHHHTCT-------TCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             eCCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcEec
Confidence            9999999999998654       588899999999999999999999   99998

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.74  E-value=4.8e-18  Score=157.48  Aligned_cols=122  Identities=19%  Similarity=0.309  Sum_probs=107.6

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...+.||+|+||.||+|... +|+.||||.+....  .....+.+.+|+..++.++||||+++++++...+..++||
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   90 (276)
T 2h6d_A           11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVM   90 (276)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEE
Confidence            46777899999999999999975 79999999996432  2234568999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.|++.||+|||+.   +|+||
T Consensus        91 e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~  135 (276)
T 2h6d_A           91 EYVSGGELFDYICKHG-------RVEEMEARRLFQQILSAVDYCHRH---MVVHR  135 (276)
T ss_dssp             ECCCSCBHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHH---CSSCC
T ss_pred             eccCCCcHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCccC
Confidence            9999999999997543       478888999999999999999999   99997

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.74  E-value=5.6e-18  Score=170.15  Aligned_cols=122  Identities=18%  Similarity=0.291  Sum_probs=108.8

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      +.|...+.||+|+||.||+|... +|+.||||++....  .....+.+.+|+.++++++|||||++++++.+.+..++|+
T Consensus        26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  105 (484)
T 3nyv_A           26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVG  105 (484)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            46777899999999999999975 78999999985332  2334678999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus       106 e~~~~~~L~~~~~~~~-------~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~  150 (484)
T 3nyv_A          106 EVYTGGELFDEIISRK-------RFSEVDAARIIRQVLSGITYMHKN---KIVHR  150 (484)
T ss_dssp             CCCCSCBHHHHHHTCS-------CCBHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             ecCCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeeeC
Confidence            9999999999998654       588899999999999999999999   99998

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.74  E-value=9.8e-19  Score=165.36  Aligned_cols=122  Identities=20%  Similarity=0.209  Sum_probs=104.6

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccc--cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCce----
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTER----  360 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~----  360 (419)
                      +.|...+.||+|+||.||+|.. .+++.||||+++.....  .....|.+|++++.+++||||+++++++......    
T Consensus        12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~   91 (311)
T 3ork_A           12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP   91 (311)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred             CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCccc
Confidence            4677789999999999999996 57899999999643222  1235789999999999999999999998775543    


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++|+|.++++...       .+++.++..++.|++.||+|||+.   +|+||
T Consensus        92 ~lv~e~~~g~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~  140 (311)
T 3ork_A           92 YIVMEYVDGVTLRDIVHTEG-------PMTPKRAIEVIADACQALNFSHQN---GIIHR  140 (311)
T ss_dssp             EEEEECCCEEEHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             EEEEecCCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCCcC
Confidence            99999999999999997543       578889999999999999999999   99997

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.74  E-value=2.3e-18  Score=167.08  Aligned_cols=121  Identities=29%  Similarity=0.428  Sum_probs=102.1

Q ss_pred             CCCCCeeCcCCceEEEEEEeC--CC--CEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecC-CceeEEe
Q 014778          290 FSNRNILGRGGFGKVYKGRLT--DG--SLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP-TERLLVY  364 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~--~g--~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-~~~~lv~  364 (419)
                      |...+.||+|+||.||+|...  ++  ..||||.++........++|.+|+.++++++||||++++++|... +..++||
T Consensus        91 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~  170 (373)
T 3c1x_A           91 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVL  170 (373)
T ss_dssp             EEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEE
T ss_pred             eecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEE
Confidence            455678999999999999963  22  468999996544444456899999999999999999999998654 5779999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.++++....      .+++.++..++.||++||+|||+.   +|+||
T Consensus       171 e~~~~g~L~~~l~~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivHr  216 (373)
T 3c1x_A          171 PYMKHGDLRNFIRNETH------NPTVKDLIGFGLQVAKGMKFLASK---KFVHR  216 (373)
T ss_dssp             ECCTTCBHHHHHHCTTC------CCBHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             ECCCCCCHHHHHhhccc------CCCHHHHHHHHHHHHHHHHHHHHC---CEecC
Confidence            99999999999986532      477888999999999999999999   99998

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.74  E-value=4.6e-18  Score=160.52  Aligned_cols=122  Identities=18%  Similarity=0.228  Sum_probs=106.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc-cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      ++|...+.||+|+||.||+|... +|+.||||++...... ...+.+.+|++++.+++||||+++++++...+..++|||
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE   82 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence            46777899999999999999975 6899999998543222 124568899999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.++++...       .+++..+..++.|+++||+|||+.   +|+||
T Consensus        83 ~~~~~~l~~~~~~~~-------~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~  126 (311)
T 4agu_A           83 YCDHTVLHELDRYQR-------GVPEHLVKSITWQTLQAVNFCHKH---NCIHR  126 (311)
T ss_dssp             CCSEEHHHHHHHTSS-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             eCCCchHHHHHhhhc-------CCCHHHHHHHHHHHHHHHHHHHHC---CCcCC
Confidence            999999999887654       578889999999999999999999   99997

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.74  E-value=3.1e-18  Score=163.79  Aligned_cols=121  Identities=18%  Similarity=0.284  Sum_probs=106.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      +.|...+.||+|+||.||+|.. .+|+.||||.+....  .......+.+|+.+++.++||||+++++++..++..++||
T Consensus         9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~   88 (336)
T 3h4j_B            9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI   88 (336)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            5677789999999999999996 578999999985432  2223467999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+ +|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus        89 E~~-~g~l~~~l~~~~-------~l~~~~~~~i~~qi~~aL~~LH~~---givH~  132 (336)
T 3h4j_B           89 EYA-GGELFDYIVEKK-------RMTEDEGRRFFQQIICAIEYCHRH---KIVHR  132 (336)
T ss_dssp             CCC-CEEHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHH---TCCCC
T ss_pred             ECC-CCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEec
Confidence            999 689999987643       588899999999999999999999   99998

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.74  E-value=4.5e-18  Score=164.54  Aligned_cols=125  Identities=11%  Similarity=0.178  Sum_probs=105.7

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEE------eCCCCEEEEEEccccccccCHHHHHHHHHHHhcCC---CCCCcceeEEEec
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGR------LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV---HRNLLRLRGFCMT  356 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~------~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~  356 (419)
                      ..+.|...+.||+|+||.||+|.      ..+++.||||+++..    ...++.+|++++..++   |+|++++++++..
T Consensus        63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~----~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~  138 (365)
T 3e7e_A           63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA----NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLF  138 (365)
T ss_dssp             SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC----CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC
T ss_pred             CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC----ChhHHHHHHHHHHHhhhhhhhhhhhhheeeec
Confidence            45678888999999999999994      346889999999543    3557888998888887   9999999999999


Q ss_pred             CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          357 PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       357 ~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .+..++||||+++|+|.++++....  .....+++.++..++.||++||+|||+.   +||||
T Consensus       139 ~~~~~lv~e~~~~g~L~~~l~~~~~--~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHr  196 (365)
T 3e7e_A          139 QNGSVLVGELYSYGTLLNAINLYKN--TPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHG  196 (365)
T ss_dssp             SSCEEEEECCCCSCBHHHHHHHHHT--STTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECC
T ss_pred             CCCcEEEEeccCCCcHHHHHHHhhc--ccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecC
Confidence            9999999999999999999975321  1112589999999999999999999998   99998

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.74  E-value=3e-18  Score=165.41  Aligned_cols=123  Identities=18%  Similarity=0.194  Sum_probs=107.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ++|...+.||+|+||.||++... +++.||+|.+.........+.+.+|+.++.+++||||+++++++..++..++||||
T Consensus        33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  112 (360)
T 3eqc_A           33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH  112 (360)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEEC
Confidence            56788899999999999999975 78999999996543333456799999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.++++...       .+++..+..++.|++.||+|||+.+  +|+||
T Consensus       113 ~~~~~L~~~l~~~~-------~~~~~~~~~i~~~i~~~l~~lh~~~--~i~H~  156 (360)
T 3eqc_A          113 MDGGSLDQVLKKAG-------RIPEQILGKVSIAVIKGLTYLREKH--KIMHR  156 (360)
T ss_dssp             CTTCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHHH--CCCCS
T ss_pred             CCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHhC--CEEcC
Confidence            99999999997643       5788889999999999999999731  69997

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.74  E-value=5.3e-18  Score=156.74  Aligned_cols=123  Identities=23%  Similarity=0.437  Sum_probs=101.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEcccccc---ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERT---QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...+.||+|+||.||+|... |+.||||+++....   ....+.+.+|+++++.++||||+++++++...+..++||
T Consensus         7 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   85 (271)
T 3dtc_A            7 AELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM   85 (271)
T ss_dssp             TSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred             hheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence            56777899999999999999985 88999999864322   223467999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.++++..        .+++..+..++.|+++||+|||+...++|+||
T Consensus        86 e~~~~~~L~~~~~~~--------~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~  132 (271)
T 3dtc_A           86 EFARGGPLNRVLSGK--------RIPPDILVNWAVQIARGMNYLHDEAIVPIIHR  132 (271)
T ss_dssp             ECCTTEEHHHHHTSS--------CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCS
T ss_pred             EcCCCCCHHHHhhcC--------CCCHHHHHHHHHHHHHHHHHHHhCCCCceeec
Confidence            999999999998654        47888999999999999999999833339997

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.74  E-value=4.6e-18  Score=171.24  Aligned_cols=122  Identities=15%  Similarity=0.251  Sum_probs=103.6

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      +.|...+.||+|+||.||+|... ++..||||+++... .......+.+|+.+++.++|||||++++++.+....++|||
T Consensus        37 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  116 (494)
T 3lij_A           37 EMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVME  116 (494)
T ss_dssp             HHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             cCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence            46778899999999999999975 78999999996433 22335689999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++....       .+++.++..++.||++||+|||+.   +|+||
T Consensus       117 ~~~~g~L~~~~~~~~-------~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~  160 (494)
T 3lij_A          117 CYKGGELFDEIIHRM-------KFNEVDAAVIIKQVLSGVTYLHKH---NIVHR  160 (494)
T ss_dssp             CCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             cCCCCcHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Cceec
Confidence            999999999887543       578889999999999999999999   99998

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.74  E-value=1.1e-17  Score=156.07  Aligned_cols=121  Identities=26%  Similarity=0.404  Sum_probs=103.0

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccC------HHHHHHHHHHHhcCCCCCCcceeEEEecCCce
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGG------ELQFQTEVEMISMAVHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~------~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  360 (419)
                      ++|...+.||+|+||.||+|.. .+++.||||++........      .+.|.+|++++.+++||||+++++++.+..  
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~--   96 (287)
T 4f0f_A           19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP--   96 (287)
T ss_dssp             TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT--
T ss_pred             ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC--
Confidence            5677789999999999999997 4789999999854332221      267999999999999999999999987654  


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccc--eecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSI--LLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~--IiHR  419 (419)
                      ++||||+++|+|.+++.....      .+++..+..++.|++.||+|||+.   +  |+||
T Consensus        97 ~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~  148 (287)
T 4f0f_A           97 RMVMEFVPCGDLYHRLLDKAH------PIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHR  148 (287)
T ss_dssp             EEEEECCTTCBHHHHHHCTTS------CCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCS
T ss_pred             eEEEEecCCCCHHHHHhcccC------CccHHHHHHHHHHHHHHHHHHHhC---CCCeecC
Confidence            799999999999998876532      588889999999999999999988   6  9997

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.74  E-value=3.7e-18  Score=163.77  Aligned_cols=124  Identities=17%  Similarity=0.302  Sum_probs=107.0

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccC----------------HHHHHHHHHHHhcCCCCCCcce
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGG----------------ELQFQTEVEMISMAVHRNLLRL  350 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~----------------~~~f~~E~~~l~~l~H~niv~l  350 (419)
                      .++|...+.||+|+||.||+|.. +|+.||||.+........                .+.|.+|+.++.+++||||+++
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  108 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC  108 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence            35788889999999999999999 899999999964322211                1789999999999999999999


Q ss_pred             eEEEecCCceeEEeccCCCCChhhh------hcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhh-ccccceecC
Q 014778          351 RGFCMTPTERLLVYPFMVNGSVASC------LRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKY-SCVSILLFC  419 (419)
Q Consensus       351 ~g~~~~~~~~~lv~e~~~~GsL~~~------L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~-~~~p~IiHR  419 (419)
                      ++++...+..++||||+++|+|.++      +....     ...+++..+..++.|++.||+|||+ .   +|+||
T Consensus       109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~-----~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~  176 (348)
T 2pml_X          109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNY-----TCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHR  176 (348)
T ss_dssp             SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSS-----CCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECC
T ss_pred             EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhcc-----ccCCCHHHHHHHHHHHHHHHHHHhccC---CEeec
Confidence            9999999999999999999999999      44321     2268899999999999999999998 7   99997

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.74  E-value=4.7e-18  Score=170.85  Aligned_cols=122  Identities=16%  Similarity=0.221  Sum_probs=108.5

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      +.|...+.||+|+||+||+|... +++.||||++.... .......+.+|++++++++|||||++++++.+.+..++|||
T Consensus        22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  101 (486)
T 3mwu_A           22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGE  101 (486)
T ss_dssp             HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEE
Confidence            46888899999999999999974 78999999995432 23346789999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus       102 ~~~~~~L~~~~~~~~-------~~~~~~~~~i~~qi~~al~~lH~~---~ivH~  145 (486)
T 3mwu_A          102 LYTGGELFDEIIKRK-------RFSEHDAARIIKQVFSGITYMHKH---NIVHR  145 (486)
T ss_dssp             CCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             cCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeEec
Confidence            999999999887643       588899999999999999999999   99998

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.74  E-value=1.3e-18  Score=162.31  Aligned_cols=125  Identities=22%  Similarity=0.367  Sum_probs=109.0

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      ...++|...+.||+|+||.||+|... ++..||||.+...  ....+.|.+|++++++++||||+++++++.+.+..++|
T Consensus        10 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v   87 (288)
T 3kfa_A           10 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED--TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYII   87 (288)
T ss_dssp             CCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC--STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEE
T ss_pred             ccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC--HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEE
Confidence            34567888899999999999999975 5889999999643  22356799999999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.++++....     ..+++..+..++.|++.||+|||+.   +|+||
T Consensus        88 ~e~~~~~~L~~~~~~~~~-----~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~  135 (288)
T 3kfa_A           88 TEFMTYGNLLDYLRECNR-----QEVSAVVLLYMATQISSAMEYLEKK---NFIHR  135 (288)
T ss_dssp             EECCTTEEHHHHHHHCCT-----TTSCHHHHHHHHHHHHHHHHHHHHH---TCCCS
T ss_pred             EEcCCCCcHHHHHHhccc-----CCccHhHHHHHHHHHHHHHHHHHHC---CccCC
Confidence            999999999999975431     1578889999999999999999999   99997

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.74  E-value=9e-18  Score=169.97  Aligned_cols=126  Identities=23%  Similarity=0.320  Sum_probs=109.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...++||+|+||.||+|+.. +|+.||+|++....  .......+.+|+.++.+++||||+++++++.+.+..++||
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm  264 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM  264 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence            56777889999999999999975 69999999996432  2234567899999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++.....   ....+++..+..++.||+.||+|||+.   +|+||
T Consensus       265 E~~~gg~L~~~l~~~~~---~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHr  313 (543)
T 3c4z_A          265 TIMNGGDIRYHIYNVDE---DNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYR  313 (543)
T ss_dssp             CCCTTCBHHHHHHTSST---TSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EeccCCCHHHHHHHhhc---ccccccHHHHHHHHHHHHHHHHHHHHc---CCccc
Confidence            99999999999976431   112588899999999999999999999   99998

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.74  E-value=4e-18  Score=162.57  Aligned_cols=124  Identities=22%  Similarity=0.329  Sum_probs=104.8

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccc-cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      ...++|...+.||+|+||+||+|.. .+++.||||+++..... ...+.+.+|++++++++||||+++++++...+..++
T Consensus        31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  110 (329)
T 3gbz_A           31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL  110 (329)
T ss_dssp             -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred             cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence            3456788899999999999999996 47899999999643322 224568899999999999999999999999999999


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||++ |+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus       111 v~e~~~-~~L~~~~~~~~-------~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~  156 (329)
T 3gbz_A          111 IFEYAE-NDLKKYMDKNP-------DVSMRVIKSFLYQLINGVNFCHSR---RCLHR  156 (329)
T ss_dssp             EEECCS-EEHHHHHHHCT-------TCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEecCC-CCHHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CEECC
Confidence            999998 59999998654       578889999999999999999999   99997

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.74  E-value=3.4e-18  Score=160.50  Aligned_cols=132  Identities=16%  Similarity=0.248  Sum_probs=94.6

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      ...++|...+.||+|+||.||+|.. .+++.||||++.........+++.+|+.++.+++||||+++++++...+..++|
T Consensus        12 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   91 (303)
T 2vwi_A           12 INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLV   91 (303)
T ss_dssp             -CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEE
T ss_pred             cchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEE
Confidence            3456788889999999999999996 478999999996544334456789999999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccc-cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIV-SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~-~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.+++...... ......+++..+..++.||+.||+|||+.   +|+||
T Consensus        92 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~  145 (303)
T 2vwi_A           92 MKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHR  145 (303)
T ss_dssp             EECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             ehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCC
Confidence            9999999999998742110 01122588899999999999999999999   99997

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.74  E-value=8.8e-18  Score=173.64  Aligned_cols=159  Identities=18%  Similarity=0.211  Sum_probs=126.7

Q ss_pred             CCCCCCCCCC---CCCCCCc----ceeEeCCC----------CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCccc
Q 014778           44 NNVLQSWDAT---LVNPCTW----FHVTCNSE----------NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNIS  106 (419)
Q Consensus        44 ~~~l~~w~~~---~~~~c~w----~~v~c~~~----------~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~  106 (419)
                      ...++.|+.+   ..+||.+    ..+.|...          ..++.|||++|+|++..+..|.++++|++|+|++|.|+
T Consensus        10 ~~~~~~~~~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~   89 (635)
T 4g8a_A           10 DDKLAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ   89 (635)
T ss_dssp             ---------------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             cchhhcccCCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC
Confidence            3345555532   2356753    35678631          36899999999999888889999999999999999999


Q ss_pred             ccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCC-CCC-C
Q 014778          107 GKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGD-IPT-N  184 (419)
Q Consensus       107 g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~-~p~-~  184 (419)
                      +..|..|.+|++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|+++++|++|++++|++++. +|. .
T Consensus        90 ~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~  169 (635)
T 4g8a_A           90 TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF  169 (635)
T ss_dssp             EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred             CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhh
Confidence            77677899999999999999999966666789999999999999999977777899999999999999999863 454 3


Q ss_pred             CCccccccccccCCCCCC
Q 014778          185 GSFSLFTPISFANNQLNN  202 (419)
Q Consensus       185 ~~~~~~~~~~~~~n~~~~  202 (419)
                      ..+..++.+++++|.+..
T Consensus       170 ~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          170 SNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             GGCTTCCEEECCSSCCCE
T ss_pred             ccchhhhhhcccCccccc
Confidence            567888999999998764

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.73  E-value=3.3e-18  Score=165.96  Aligned_cols=123  Identities=19%  Similarity=0.253  Sum_probs=98.3

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHH-HhcCCCCCCcceeEEEecCCceeE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEM-ISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~-l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      .++|...+.||+|+||.||+++.. +++.||||+++....  ......+.+|..+ ++.++|||||++++++.+.+..++
T Consensus        37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l  116 (373)
T 2r5t_A           37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF  116 (373)
T ss_dssp             GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence            356888899999999999999975 688999999964432  2223456777776 577999999999999999999999


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||+++|+|.++++...       .+++..+..++.||+.||+|||+.   +|+||
T Consensus       117 v~E~~~gg~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---givHr  163 (373)
T 2r5t_A          117 VLDYINGGELFYHLQRER-------CFLEPRARFYAAEIASALGYLHSL---NIVYR  163 (373)
T ss_dssp             EEECCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             EEeCCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Cceec
Confidence            999999999999998643       577888899999999999999999   99998

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.73  E-value=6.9e-18  Score=158.89  Aligned_cols=121  Identities=17%  Similarity=0.273  Sum_probs=104.5

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +.|...+.||+|+||.||++... +|+.||+|.++... ....+.+.+|+.++.+++||||+++++++.+.+..++||||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   87 (304)
T 2jam_A            9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSP-AFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQL   87 (304)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC-------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEeccc-ccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEc
Confidence            46778899999999999999974 78999999996432 22345789999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.+++....       .+++.++..++.|++.||+|||+.   +|+||
T Consensus        88 ~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~  130 (304)
T 2jam_A           88 VSGGELFDRILERG-------VYTEKDASLVIQQVLSAVKYLHEN---GIVHR  130 (304)
T ss_dssp             CCSCBHHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             CCCccHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            99999999987543       578888999999999999999999   99997

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.73  E-value=8.4e-18  Score=162.28  Aligned_cols=132  Identities=20%  Similarity=0.289  Sum_probs=111.7

Q ss_pred             ccHHHHHHHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccC----------HHHHHHHHHHHhcCCCCCC
Q 014778          278 FSLRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGG----------ELQFQTEVEMISMAVHRNL  347 (419)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~----------~~~f~~E~~~l~~l~H~ni  347 (419)
                      ..+.++....+.|...+.||+|+||.||+|...+|+.||||++........          .+.+.+|++++.+++||||
T Consensus        12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i   91 (362)
T 3pg1_A           12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNI   91 (362)
T ss_dssp             HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTB
T ss_pred             HHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCc
Confidence            345677888899999999999999999999988899999999964322111          2679999999999999999


Q ss_pred             cceeEEEecC-----CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          348 LRLRGFCMTP-----TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       348 v~l~g~~~~~-----~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++++++...     ...++||||++ |+|.+++.....      .+++..+..++.||+.||+|||+.   +|+||
T Consensus        92 v~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~  158 (362)
T 3pg1_A           92 LGLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRI------VISPQHIQYFMYHILLGLHVLHEA---GVVHR  158 (362)
T ss_dssp             CCCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTS------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             cceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhccc------CCCHHHHHHHHHHHHHHHHHHHHC---cCEec
Confidence            9999998543     35799999998 689988875432      578889999999999999999999   99997

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.73  E-value=6.9e-18  Score=157.23  Aligned_cols=122  Identities=26%  Similarity=0.390  Sum_probs=107.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...+.||+|+||.||+|... +++.||||.+....  .....+.+.+|++++++++||||+++++++.+.+..++||
T Consensus        14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   93 (284)
T 2vgo_A           14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML   93 (284)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence            56778899999999999999975 67899999985432  2233567999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++..+..++.|++.||+|||+.   +|+||
T Consensus        94 e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~  138 (284)
T 2vgo_A           94 EFAPRGELYKELQKHG-------RFDEQRSATFMEELADALHYCHER---KVIHR  138 (284)
T ss_dssp             CCCTTEEHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHTT---TEECC
T ss_pred             EeCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Cceec
Confidence            9999999999997643       578888999999999999999999   99997

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.73  E-value=7.9e-18  Score=157.61  Aligned_cols=122  Identities=11%  Similarity=0.175  Sum_probs=106.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      +.|...+.||+|+||.||++... +++.||+|.+.....  ....+.+.+|+.+++.++||||+++++++.+.+..++||
T Consensus        15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   94 (294)
T 2rku_A           15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL   94 (294)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEE
Confidence            45777899999999999999975 588999999854321  223457899999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.|+++||+|||+.   +|+||
T Consensus        95 e~~~~~~L~~~~~~~~-------~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~  139 (294)
T 2rku_A           95 ELCRRRSLLELHKRRK-------ALTEPEARYYLRQIVLGCQYLHRN---RVIHR  139 (294)
T ss_dssp             ECCTTCBHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             ecCCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            9999999999887543       578889999999999999999999   99997

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.73  E-value=1.1e-17  Score=157.01  Aligned_cols=117  Identities=22%  Similarity=0.311  Sum_probs=99.3

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhc--CCCCCCcceeEEEecC----Cce
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISM--AVHRNLLRLRGFCMTP----TER  360 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~--l~H~niv~l~g~~~~~----~~~  360 (419)
                      .++|...+.||+|+||+||+|+. +|+.||||++...    ....+.+|.+++..  ++||||+++++++...    ...
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~----~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~   81 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR----DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQL   81 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG----GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc----cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCcee
Confidence            35788889999999999999998 6889999998543    34566777777666  8999999999997653    457


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhh--------hccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAK--------YSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH--------~~~~p~IiHR  419 (419)
                      ++||||+++|+|.++++..        .+++.++..++.|+++||+|||        +.   +|+||
T Consensus        82 ~lv~e~~~~g~L~~~l~~~--------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~  137 (301)
T 3q4u_A           82 WLITHYHEMGSLYDYLQLT--------TLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHR  137 (301)
T ss_dssp             EEEECCCTTCBHHHHHTTC--------CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECS
T ss_pred             EEehhhccCCCHHHHHhhc--------ccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecC
Confidence            8999999999999999654        4888899999999999999999        66   99998

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.73  E-value=8.4e-18  Score=157.52  Aligned_cols=121  Identities=20%  Similarity=0.305  Sum_probs=102.1

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CC---CEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCce-eEEe
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DG---SLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTER-LLVY  364 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g---~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~-~lv~  364 (419)
                      |...+.||+|+||.||+|... ++   ..||+|.+.........+.|.+|+.++++++||||+++++++.+.+.. ++|+
T Consensus        23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~  102 (298)
T 3pls_A           23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLL  102 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEE
T ss_pred             EccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEE
Confidence            344588999999999999853 33   379999996544333456899999999999999999999999876665 9999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.++++....      .+++.++..++.|+++||+|||+.   +|+||
T Consensus       103 e~~~~~~L~~~~~~~~~------~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~  148 (298)
T 3pls_A          103 PYMCHGDLLQFIRSPQR------NPTVKDLISFGLQVARGMEYLAEQ---KFVHR  148 (298)
T ss_dssp             CCCTTCBHHHHHHCTTC------CCBHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             ecccCCCHHHHHhcccc------CCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            99999999999986432      578888999999999999999999   99997

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.73  E-value=6.7e-18  Score=161.42  Aligned_cols=122  Identities=11%  Similarity=0.175  Sum_probs=106.6

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      +.|...+.||+|+||.||++... +++.||+|.+.....  ....+.+.+|+.+++.++|+||+++++++.+.+..++||
T Consensus        41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  120 (335)
T 2owb_A           41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL  120 (335)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEE
Confidence            46777899999999999999975 588999999854321  123457899999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.|++.||+|||+.   +|+||
T Consensus       121 e~~~~~~L~~~~~~~~-------~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~  165 (335)
T 2owb_A          121 ELCRRRSLLELHKRRK-------ALTEPEARYYLRQIVLGCQYLHRN---RVIHR  165 (335)
T ss_dssp             CCCTTCBHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             ecCCCCCHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCEec
Confidence            9999999999887543       578889999999999999999999   99997

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.73  E-value=8.4e-18  Score=157.92  Aligned_cols=123  Identities=19%  Similarity=0.323  Sum_probs=105.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .+.|...+.||+|+||.||+|... +++.||+|.+... .....+.|.+|++++..++||||+++++++...+..++|||
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   96 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETK-SEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE   96 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC-----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred             ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCC-CHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence            456778899999999999999975 6899999998543 33446789999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++.....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus        97 ~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  141 (302)
T 2j7t_A           97 FCPGGAVDAIMLELDR------GLTEPQIQVVCRQMLEALNFLHSK---RIIHR  141 (302)
T ss_dssp             CCTTEEHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             eCCCCcHHHHHHhhcc------CCCHHHHHHHHHHHHHHHHHHhcC---CcccC
Confidence            9999999999875321      578889999999999999999999   99997

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.73  E-value=9.9e-18  Score=159.53  Aligned_cols=129  Identities=22%  Similarity=0.423  Sum_probs=105.6

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCE--EEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSL--VAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~--vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  363 (419)
                      ++|...+.||+|+||.||+|... +|..  ||||.++........+.+.+|++++.++ +||||+++++++.+.+..++|
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv  104 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA  104 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence            56777899999999999999964 5664  4999986544444456799999999999 999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccc---------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIV---------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~---------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.++++.....         ......+++.++..++.|+++||+|||+.   +|+||
T Consensus       105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~  166 (327)
T 1fvr_A          105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHR  166 (327)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCC
Confidence            9999999999999865310         01123588899999999999999999999   99997

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.73  E-value=1.8e-17  Score=155.05  Aligned_cols=123  Identities=18%  Similarity=0.284  Sum_probs=103.6

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      .+....+||+|+||.||+|.. .+++.||||.+... .....+.+.+|+.++..++||||+++++++...+..++||||+
T Consensus        23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~  101 (295)
T 2clq_A           23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPER-DSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQV  101 (295)
T ss_dssp             TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECC-CC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCC-chHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeC
Confidence            455567999999999999996 46889999998543 2334567999999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|.+++.....    ...+++..+..++.|++.||+|||+.   +|+||
T Consensus       102 ~~~~L~~~l~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~  146 (295)
T 2clq_A          102 PGGSLSALLRSKWG----PLKDNEQTIGFYTKQILEGLKYLHDN---QIVHR  146 (295)
T ss_dssp             SEEEHHHHHHHTTC----CCTTCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             CCCCHHHHHHhhcc----CCCccHHHHHHHHHHHHHHHHHHHhC---CEEcc
Confidence            99999999976431    12456778888999999999999999   99997

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.73  E-value=6.4e-18  Score=158.49  Aligned_cols=123  Identities=27%  Similarity=0.374  Sum_probs=102.8

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCC----CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEec-CCceeE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTD----GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT-PTERLL  362 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~~~l  362 (419)
                      ..|...+.||+|+||.||+|...+    +..||||.+.........+.|.+|+.++++++||||++++++|.. ++..++
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  104 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV  104 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEE
Confidence            346667899999999999999642    236899998654443445679999999999999999999999765 457799


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||+++|+|.++++....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus       105 v~e~~~~~~L~~~l~~~~~------~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~  152 (298)
T 3f66_A          105 VLPYMKHGDLRNFIRNETH------NPTVKDLIGFGLQVAKGMKYLASK---KFVHR  152 (298)
T ss_dssp             EEECCTTCBHHHHHHCTTC------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEeCCCCCCHHHHHHhccc------CCCHHHHHHHHHHHHHHHHHHHhC---CccCC
Confidence            9999999999999976432      477888999999999999999999   99997

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.73  E-value=7.3e-18  Score=160.09  Aligned_cols=122  Identities=16%  Similarity=0.247  Sum_probs=102.3

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-------ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-------QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT  358 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-------~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  358 (419)
                      .++|...+.||+|+||.||+|... +++.||||.+.....       ......+.+|++++.+++||||+++++++...+
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   88 (322)
T 2ycf_A            9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED   88 (322)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred             hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence            356888899999999999999974 688999999854321       112345889999999999999999999987655


Q ss_pred             ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 ~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                       .++||||+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus        89 -~~lv~e~~~~~~L~~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~  138 (322)
T 2ycf_A           89 -YYIVLELMEGGELFDKVVGNK-------RLKEATCKLYFYQMLLAVQYLHEN---GIIHR  138 (322)
T ss_dssp             -EEEEEECCTTEETHHHHSTTC-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             -eEEEEecCCCCcHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence             899999999999999997654       578889999999999999999999   99997

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.73  E-value=7.5e-18  Score=159.15  Aligned_cols=123  Identities=19%  Similarity=0.199  Sum_probs=107.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccccc--CHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQG--GELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~--~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      .++|...+.||+|+||.||+|... +++.||||.+.......  ..+.+.+|+.++.+++||||+++++++..++..++|
T Consensus        33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 2h34_A           33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD  112 (309)
T ss_dssp             -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence            467888899999999999999975 68899999996443221  236789999999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||+++|+|.+++....       .+++.++..++.|++.||+|||+.   +|+||
T Consensus       113 ~e~~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~  158 (309)
T 2h34_A          113 MRLINGVDLAAMLRRQG-------PLAPPRAVAIVRQIGSALDAAHAA---GATHR  158 (309)
T ss_dssp             EECCCCEEHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEecCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---cCCcC
Confidence            99999999999998643       578889999999999999999999   99997

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.73  E-value=3.8e-18  Score=159.64  Aligned_cols=122  Identities=21%  Similarity=0.281  Sum_probs=101.6

Q ss_pred             hhCCCCCC-eeCcCCceEEEEEEe---CCCCEEEEEEccccccc-cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCcee
Q 014778          287 TDNFSNRN-ILGRGGFGKVYKGRL---TDGSLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       287 ~~~~~~~~-~lG~G~fg~Vy~~~~---~~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  361 (419)
                      .+.|...+ .||+|+||.||+|.+   .+++.||||.++..... ...++|.+|+.++..++||||+++++++ ..+..+
T Consensus        15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~   93 (291)
T 1xbb_A           15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM   93 (291)
T ss_dssp             GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred             chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence            34566666 899999999999965   24688999999644322 2256799999999999999999999999 566789


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++|+|.+++....       .+++.++..++.|+++||+|||+.   +|+||
T Consensus        94 lv~e~~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~  141 (291)
T 1xbb_A           94 LVMEMAELGPLNKYLQQNR-------HVKDKNIIELVHQVSMGMKYLEES---NFVHR  141 (291)
T ss_dssp             EEEECCTTEEHHHHHHHCT-------TCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEEEeCCCCCHHHHHHhCc-------CCCHHHHHHHHHHHHHHHHHHHhC---CeEcC
Confidence            9999999999999998653       578889999999999999999999   99997

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.73  E-value=3.2e-17  Score=151.98  Aligned_cols=136  Identities=29%  Similarity=0.343  Sum_probs=108.7

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..+++.|+|++|.+++.  +.++.+++|++|+|++|.+++..|..+..+++|++|++++|++++..|..++++++|++|+
T Consensus        62 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  139 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN  139 (272)
T ss_dssp             CTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence            35688888888888873  4788888888888888888876666678888888888888888866666678888888888


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCCCCC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNNPPP  205 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~~~~  205 (419)
                      |++|++++..|..+..+++|+.|++++|++++.+|. ...+.+++.+++++|.+...++
T Consensus       140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  198 (272)
T 3rfs_A          140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD  198 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence            888888877677778888888888888888876664 3567788888888888775443

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.73  E-value=3.2e-18  Score=165.06  Aligned_cols=123  Identities=22%  Similarity=0.276  Sum_probs=106.8

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe----CCCCEEEEEEccccc---cccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCC
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL----TDGSLVAVKRLKEER---TQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPT  358 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~---~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~  358 (419)
                      .++|...+.||+|+||.||+++.    .+|+.||||+++...   .....+.+.+|++++.++ +||||+++++++...+
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  132 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  132 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence            35788889999999999999997    368999999996432   122345678899999999 6999999999999999


Q ss_pred             ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 ~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..++||||+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus       133 ~~~lv~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~  183 (355)
T 1vzo_A          133 KLHLILDYINGGELFTHLSQRE-------RFTEHEVQIYVGEIVLALEHLHKL---GIIYR  183 (355)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             eEEEEeecCCCCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            9999999999999999997643       578889999999999999999999   99998

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.73  E-value=2.6e-18  Score=163.17  Aligned_cols=132  Identities=20%  Similarity=0.353  Sum_probs=100.7

Q ss_pred             HHHhhCCCCCCeeCcCCceEEEEEEeCC-C---CEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC
Q 014778          284 QVATDNFSNRNILGRGGFGKVYKGRLTD-G---SLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT  358 (419)
Q Consensus       284 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~-g---~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  358 (419)
                      ....++|...+.||+|+||.||+|.... +   ..||||.++... .....+.|.+|++++++++||||+++++++...+
T Consensus        19 ~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   98 (323)
T 3qup_A           19 LIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSR   98 (323)
T ss_dssp             BCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC-
T ss_pred             ccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccc
Confidence            3445678888999999999999999643 3   279999996432 2233567999999999999999999999998876


Q ss_pred             ce------eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 ER------LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 ~~------~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..      ++|+||+++|+|.+++...... .....+++.++..++.|+++||+|||+.   +|+||
T Consensus        99 ~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~  161 (323)
T 3qup_A           99 AKGRLPIPMVILPFMKHGDLHAFLLASRIG-ENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHR  161 (323)
T ss_dssp             ------CEEEEEECCTTCBHHHHHHHHHC----CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             cccCCCccEEEEEeccCCcHHHHHHhhhcc-ccccccCHHHHHHHHHHHHHHHHHHHcC---CcccC
Confidence            55      9999999999999999754321 1222588889999999999999999999   99997

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.73  E-value=9.3e-18  Score=173.70  Aligned_cols=115  Identities=23%  Similarity=0.291  Sum_probs=99.8

Q ss_pred             CeeCcCCceEEEEEEeC---CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRLT---DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      +.||+|+||.||+|.+.   +++.||||+++.... ....++|.+|+++|.+++|||||+++++|.. +..++|||||++
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~  453 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL  453 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence            47999999999999763   467899999975432 2235789999999999999999999999965 458899999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|.++++...       .+++.++..++.||+.||+|||+.   +||||
T Consensus       454 g~L~~~l~~~~-------~l~~~~~~~i~~qi~~~L~yLH~~---~iiHr  493 (635)
T 4fl3_A          454 GPLNKYLQQNR-------HVKDKNIIELVHQVSMGMKYLEES---NFVHR  493 (635)
T ss_dssp             EEHHHHHHHCT-------TCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             CCHHHHHhhCC-------CCCHHHHHHHHHHHHHHHHHHHHC---CEeCC
Confidence            99999997543       588889999999999999999999   99998

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.73  E-value=6.4e-18  Score=159.92  Aligned_cols=126  Identities=22%  Similarity=0.293  Sum_probs=104.3

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEec----CCcee
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT----PTERL  361 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~  361 (419)
                      .++|...+.||+|+||.||++.. .+|+.||||++... .....+.+.+|+++++.++||||+++++++..    ....+
T Consensus        28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  106 (317)
T 2buj_A           28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH-EQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAW  106 (317)
T ss_dssp             TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEES-SHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEE
T ss_pred             CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecC-CHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeE
Confidence            45788889999999999999996 57999999998532 22335679999999999999999999999973    34678


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|+||+++|+|.+++.....   ....+++.++..++.|+++||+|||+.   +|+||
T Consensus       107 lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~  158 (317)
T 2buj_A          107 LLLPFFKRGTLWNEIERLKD---KGNFLTEDQILWLLLGICRGLEAIHAK---GYAHR  158 (317)
T ss_dssp             EEEECCTTCBHHHHHHHHHT---TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EEEEeCCCCcHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            99999999999999975321   112588899999999999999999999   99997

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.73  E-value=4.6e-18  Score=162.64  Aligned_cols=123  Identities=16%  Similarity=0.197  Sum_probs=107.1

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccc-------cCHHHHHHHHHHHhcCCCCCCcceeEEEecCC
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQ-------GGELQFQTEVEMISMAVHRNLLRLRGFCMTPT  358 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~-------~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~  358 (419)
                      .+.|...+.||+|+||.||+|.. .+++.||||.++.....       .....+.+|++++.+++||||+++++++.+.+
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~  102 (335)
T 3dls_A           23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG  102 (335)
T ss_dssp             HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred             ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence            46788889999999999999996 47899999999643211       12335788999999999999999999999999


Q ss_pred             ceeEEeccCCCC-ChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 ERLLVYPFMVNG-SVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 ~~~lv~e~~~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..++||||+..| +|.+++....       .+++..+..++.||+.||+|||+.   +|+||
T Consensus       103 ~~~lv~e~~~~g~~l~~~~~~~~-------~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~  154 (335)
T 3dls_A          103 FFQLVMEKHGSGLDLFAFIDRHP-------RLDEPLASYIFRQLVSAVGYLRLK---DIIHR  154 (335)
T ss_dssp             EEEEEEECCTTSCBHHHHHHTCC-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEEEEEEeCCCCccHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeEEe
Confidence            999999999887 9999998764       588889999999999999999999   99997

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.73  E-value=1.6e-17  Score=145.83  Aligned_cols=128  Identities=23%  Similarity=0.348  Sum_probs=114.6

Q ss_pred             EEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCc-cccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEccc
Q 014778           72 TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPE-ELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNN  150 (419)
Q Consensus        72 ~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~-~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~  150 (419)
                      +.+++++|+++ .+|..+..  +|++|+|++|.|++..|. .+..+++|++|+|++|++++..|..+.++++|+.|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            68999999995 57776654  899999999999965554 489999999999999999998899999999999999999


Q ss_pred             CcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCC
Q 014778          151 NSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       151 N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~  202 (419)
                      |++++..|..|..+++|++|++++|++++.+|. ...+..++.+++++|++.+
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            999998888899999999999999999998884 5667889999999998764

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.73  E-value=4.8e-18  Score=161.68  Aligned_cols=122  Identities=18%  Similarity=0.290  Sum_probs=102.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCC----EEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      ++|...+.||+|+||.||+|... +++    .||+|.+.........+.+.+|+.++++++||||+++++++. .+..++
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~   91 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL   91 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence            35677789999999999999964 454    388888854433334456889999999999999999999986 456889


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+||+++|+|.+++.....      .+++..+..++.||++||+|||+.   +|+||
T Consensus        92 v~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~  139 (325)
T 3kex_A           92 VTQYLPLGSLLDHVRQHRG------ALGPQLLLNWGVQIAKGMYYLEEH---GMVHR  139 (325)
T ss_dssp             EEECCTTCBSHHHHHSSGG------GSCTTHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEEeCCCCCHHHHHHHccc------cCCHHHHHHHHHHHHHHHHHHHhC---CCCCC
Confidence            9999999999999987532      577888999999999999999999   99998

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.72  E-value=6.2e-18  Score=162.57  Aligned_cols=122  Identities=21%  Similarity=0.301  Sum_probs=104.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      +.|...+.||+|+||.||+|.. .+|+.||||++.....  ....++|.+|++++++++||||+++++++...+..++||
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  133 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM  133 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence            4577788999999999999996 5789999999854321  122357899999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||++ |+|.+++.....      .+++.++..++.|+++||+|||+.   +|+||
T Consensus       134 e~~~-g~l~~~l~~~~~------~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~  178 (348)
T 1u5q_A          134 EYCL-GSASDLLEVHKK------PLQEVEIAAVTHGALQGLAYLHSH---NMIHR  178 (348)
T ss_dssp             ECCS-EEHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCC
T ss_pred             ecCC-CCHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CeeeC
Confidence            9998 688888864321      578889999999999999999999   99997

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.72  E-value=1.6e-17  Score=155.07  Aligned_cols=123  Identities=16%  Similarity=0.222  Sum_probs=108.8

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      .+.|...+.||+|+||.||+|... +++.||||++..... ....+.+.+|++++++++||||+++++++...+..++|+
T Consensus        21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  100 (287)
T 2wei_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (287)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEE
Confidence            457888899999999999999975 789999999864332 334678999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.|++.||+|||+.   +|+||
T Consensus       101 e~~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~  145 (287)
T 2wei_A          101 ELYTGGELFDEIIKRK-------RFSEHDAARIIKQVFSGITYMHKH---NIVHR  145 (287)
T ss_dssp             CCCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EccCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            9999999999887543       578889999999999999999999   99997

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.72  E-value=3.1e-18  Score=162.96  Aligned_cols=122  Identities=21%  Similarity=0.352  Sum_probs=102.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ++|...+.||+|+||.||+|... +++.||||+++..........+.+|++++++++||||+++++++...+..++||||
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   81 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence            45777899999999999999975 78999999996443322223466899999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++ |+|.+++.....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus        82 ~~-~~l~~~~~~~~~------~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~  124 (324)
T 3mtl_A           82 LD-KDLKQYLDDCGN------IINMHNVKLFLFQLLRGLAYCHRQ---KVLHR  124 (324)
T ss_dssp             CS-EEHHHHHHHTTT------CCCHHHHHHHHHHHHHHHHHHHHT---TEEES
T ss_pred             cc-cCHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---CccCC
Confidence            98 599998876432      578888999999999999999999   99997

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.72  E-value=1e-17  Score=159.43  Aligned_cols=122  Identities=19%  Similarity=0.318  Sum_probs=104.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-----CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEec--CCce
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-----TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT--PTER  360 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~  360 (419)
                      ++|...+.||+|+||.||+|++     .+++.||||++.... ....+.+.+|++++++++||||+++++++..  ....
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  101 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSG-PDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL  101 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCC-HHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEE
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCC-HHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceE
Confidence            4677789999999999999985     368899999996432 2234579999999999999999999999874  4568


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++|+|.+++.....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~i~~qi~~al~~lH~~---~ivH~  151 (327)
T 3lxl_A          102 RLVMEYLPSGCLRDFLQRHRA------RLDASRLLLYSSQICKGMEYLGSR---RCVHR  151 (327)
T ss_dssp             EEEEECCTTCBHHHHHHHHGG------GCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEEEeecCCCCHHHHHHhccc------CCCHHHHHHHHHHHHHHHHHHHhC---CccCC
Confidence            899999999999999976431      488899999999999999999999   99997

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.72  E-value=1.5e-17  Score=158.20  Aligned_cols=122  Identities=20%  Similarity=0.398  Sum_probs=103.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-----CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC--ce
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-----TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT--ER  360 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--~~  360 (419)
                      +.|...+.||+|+||.||++.+     .+|+.||||++... .....+.|.+|++++++++||||+++++++...+  ..
T Consensus        41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~  119 (326)
T 2w1i_A           41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHS-TEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL  119 (326)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSC-CSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CC
T ss_pred             HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccC-CHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCce
Confidence            4577778999999999999984     36889999999643 2233567999999999999999999999987754  67


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++|+|.+++.....      .+++.++..++.|+++||+|||+.   +|+||
T Consensus       120 ~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~  169 (326)
T 2w1i_A          120 KLIMEYLPYGSLRDYLQKHKE------RIDHIKLLQYTSQICKGMEYLGTK---RYIHR  169 (326)
T ss_dssp             EEEECCCTTCBHHHHHHHSTT------SSCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEEEECCCCCCHHHHHHhccc------CCCHHHHHHHHHHHHHHHHHHHhC---CEecc
Confidence            999999999999999986532      478889999999999999999998   99997

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.72  E-value=1.3e-17  Score=157.33  Aligned_cols=127  Identities=17%  Similarity=0.253  Sum_probs=105.8

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      .++|...+.||+|+||.||+|.. .+|+.||||+++...  .......+.+|+.++.+++||||+++++++...+..++|
T Consensus        31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv  110 (310)
T 2wqm_A           31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV  110 (310)
T ss_dssp             GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence            34688889999999999999996 478999999996422  122345789999999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.+++.....   ....+++.++..++.|++.||+|||+.   +|+||
T Consensus       111 ~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~  160 (310)
T 2wqm_A          111 LELADAGDLSRMIKHFKK---QKRLIPERTVWKYFVQLCSALEHMHSR---RVMHR  160 (310)
T ss_dssp             EECCCSCBHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             EecCCCCCHHHHHHHhcc---cccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCC
Confidence            999999999999975321   112578888999999999999999999   99997

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.72  E-value=1.2e-17  Score=157.68  Aligned_cols=122  Identities=22%  Similarity=0.383  Sum_probs=101.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      ++|...+.||+|+||.||+|... ++.||||.+...   ...+.|.+|++++++++||||+++++++.  +..++||||+
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~   81 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE---SERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYA   81 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST---THHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECC
T ss_pred             hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh---hHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcC
Confidence            45677789999999999999985 788999999532   23567999999999999999999999887  4579999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|.++++....    ...+++.+++.++.|+++||+|||+....+|+||
T Consensus        82 ~~~~L~~~l~~~~~----~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~  129 (307)
T 2eva_A           82 EGGSLYNVLHGAEP----LPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHR  129 (307)
T ss_dssp             TTCBHHHHHHCSSS----EECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCC
T ss_pred             CCCCHHHHHhccCC----CCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecC
Confidence            99999999986532    1136778889999999999999998322289997

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.72  E-value=1.2e-17  Score=156.49  Aligned_cols=122  Identities=16%  Similarity=0.301  Sum_probs=104.0

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEec---------
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT---------  356 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~---------  356 (419)
                      .++|...+.||+|+||.||+|.. .+|+.||||+++..  ....+.+.+|+.++.+++||||+++++++.+         
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~--~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   82 (303)
T 1zy4_A            5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT--EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT   82 (303)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE--HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred             cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc--HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence            45688889999999999999996 47899999999532  2234678999999999999999999998865         


Q ss_pred             ----CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          357 ----PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       357 ----~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                          .+..++||||+++|+|.++++....      .+++.++..++.|+++||+|||+.   +|+||
T Consensus        83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~  140 (303)
T 1zy4_A           83 AVKKKSTLFIQMEYCENGTLYDLIHSENL------NQQRDEYWRLFRQILEALSYIHSQ---GIIHR  140 (303)
T ss_dssp             ---CEEEEEEEEECCCSCBHHHHHHHSCG------GGCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             ccccCCceEEEEecCCCCCHHHhhhcccc------ccchHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence                3457899999999999999985431      467788889999999999999999   99997

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.72  E-value=9.1e-19  Score=167.43  Aligned_cols=121  Identities=19%  Similarity=0.201  Sum_probs=99.5

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccc-------cccCHHHHHHHHHHHhcCC---------CCCCcce
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEER-------TQGGELQFQTEVEMISMAV---------HRNLLRL  350 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~-------~~~~~~~f~~E~~~l~~l~---------H~niv~l  350 (419)
                      .++|...+.||+|+||+||+|+. +|+.||||+++...       .....+.+.+|+.+++.++         |||+|++
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l   97 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGL   97 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCE
T ss_pred             cccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhh
Confidence            45677889999999999999998 68999999996432       1223468899999988875         8888888


Q ss_pred             eEEEe------------------------------cCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHH
Q 014778          351 RGFCM------------------------------TPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQS  400 (419)
Q Consensus       351 ~g~~~------------------------------~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~q  400 (419)
                      .+.+.                              ..+..++||||+++|++.+.+.+.        .+++.++..++.|
T Consensus        98 ~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~--------~~~~~~~~~i~~q  169 (336)
T 2vuw_A           98 NSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTK--------LSSLATAKSILHQ  169 (336)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTT--------CCCHHHHHHHHHH
T ss_pred             cceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhc--------CCCHHHHHHHHHH
Confidence            87653                              257789999999999877776542        4788899999999


Q ss_pred             HHHHHHHhh-hccccceecC
Q 014778          401 LIQSLHFAK-YSCVSILLFC  419 (419)
Q Consensus       401 ia~gl~yLH-~~~~p~IiHR  419 (419)
                      |+.||+||| +.   +||||
T Consensus       170 i~~aL~~lH~~~---~ivHr  186 (336)
T 2vuw_A          170 LTASLAVAEASL---RFEHR  186 (336)
T ss_dssp             HHHHHHHHHHHH---CCBCS
T ss_pred             HHHHHHHHHHhC---CEeEC
Confidence            999999999 88   99998

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.72  E-value=1e-17  Score=155.86  Aligned_cols=123  Identities=20%  Similarity=0.295  Sum_probs=103.9

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCC----CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTD----GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      .++|...+.||+|+||.||+|...+    +..||||.++........+.|.+|+.++++++||||+++++++.+ +..++
T Consensus        11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~   89 (281)
T 3cc6_A           11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWI   89 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEE
T ss_pred             ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEE
Confidence            4577888999999999999998632    346999999654333345689999999999999999999999865 45689


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||+++|+|.+++.....      .+++.++..++.|+++||+|||+.   +|+||
T Consensus        90 v~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  137 (281)
T 3cc6_A           90 IMELYPYGELGHYLERNKN------SLKVLTLVLYSLQICKAMAYLESI---NCVHR  137 (281)
T ss_dssp             EEECCTTCBHHHHHHHHTT------TCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             EEecCCCCCHHHHHHhccc------cCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            9999999999999975431      478888999999999999999999   99997

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.72  E-value=2.3e-17  Score=159.64  Aligned_cols=128  Identities=16%  Similarity=0.197  Sum_probs=109.3

Q ss_pred             HHHHHhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc-------cCHHHHHHHHHHHhcC-CCCCCcceeE
Q 014778          282 ELQVATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ-------GGELQFQTEVEMISMA-VHRNLLRLRG  352 (419)
Q Consensus       282 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-------~~~~~f~~E~~~l~~l-~H~niv~l~g  352 (419)
                      ......++|...+.||+|+||.||+|... +|+.||||+++.....       ...+.+.+|+.++.++ +||||+++++
T Consensus        88 ~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~  167 (365)
T 2y7j_A           88 AAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLID  167 (365)
T ss_dssp             HHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEE
T ss_pred             hhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEE
Confidence            33444567888899999999999999985 7999999998543211       1134688999999998 8999999999


Q ss_pred             EEecCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          353 FCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       353 ~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++...+..++||||+++|+|.+++....       .+++..+..++.||+.||+|||+.   +|+||
T Consensus       168 ~~~~~~~~~lv~e~~~g~~L~~~l~~~~-------~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~  224 (365)
T 2y7j_A          168 SYESSSFMFLVFDLMRKGELFDYLTEKV-------ALSEKETRSIMRSLLEAVSFLHAN---NIVHR  224 (365)
T ss_dssp             EEEBSSEEEEEECCCTTCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEeeCCEEEEEEEeCCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            9999999999999999999999997543       588889999999999999999999   99997

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.72  E-value=1.6e-17  Score=165.17  Aligned_cols=149  Identities=19%  Similarity=0.290  Sum_probs=130.4

Q ss_pred             CCCCcce--eEeCCC---------CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccC-CccccCCCcCcEEe
Q 014778           56 NPCTWFH--VTCNSE---------NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKV-PEELGNLTNLVSLD  123 (419)
Q Consensus        56 ~~c~w~~--v~c~~~---------~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~-p~~~~~l~~L~~L~  123 (419)
                      +.|.|.+  +.|...         .+++.|+|++|.+++..|..|+++++|++|+|++|.+.+.+ |..|..+++|++|+
T Consensus         6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~   85 (455)
T 3v47_A            6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK   85 (455)
T ss_dssp             -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred             ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence            4565555  888742         46899999999999988999999999999999999998777 45799999999999


Q ss_pred             ccccccCCCCCcccCCCCCCCEEEcccCcCcccCCcc--CcCCCCCcEEEcccCcCCCCCCC--CCCccccccccccCCC
Q 014778          124 LYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRS--LTNVNSLQVLDLSNNKLTGDIPT--NGSFSLFTPISFANNQ  199 (419)
Q Consensus       124 ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~--l~~l~~L~~l~l~~N~l~g~~p~--~~~~~~~~~~~~~~n~  199 (419)
                      |++|++++..|..++++++|++|+|++|++++.+|..  +..+++|++|++++|++++..|.  ...+.+++.+++++|.
T Consensus        86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A           86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred             CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence            9999999888999999999999999999999876665  99999999999999999998886  5678889999999998


Q ss_pred             CCCCC
Q 014778          200 LNNPP  204 (419)
Q Consensus       200 ~~~~~  204 (419)
                      +....
T Consensus       166 l~~~~  170 (455)
T 3v47_A          166 VKSIC  170 (455)
T ss_dssp             BSCCC
T ss_pred             ccccC
Confidence            77543

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.71  E-value=1.2e-17  Score=160.21  Aligned_cols=121  Identities=15%  Similarity=0.180  Sum_probs=105.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCC--CCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVH--RNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H--~niv~l~g~~~~~~~~~lv~  364 (419)
                      +.|...+.||+|+||.||++...+++.||||++..... ....+.|.+|+.++.+++|  +||+++++++...+..++||
T Consensus         9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~   88 (343)
T 3dbq_A            9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM   88 (343)
T ss_dssp             CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEE
Confidence            45777899999999999999988899999999854322 2224678999999999987  99999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      | +.+|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus        89 e-~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~al~~lH~~---~iiHr  132 (343)
T 3dbq_A           89 E-CGNIDLNSWLKKKK-------SIDPWERKSYWKNMLEAVHTIHQH---GIVHS  132 (343)
T ss_dssp             C-CCSEEHHHHHHHSC-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             e-CCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            9 56789999998654       578889999999999999999999   99998

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.71  E-value=1.2e-17  Score=156.47  Aligned_cols=123  Identities=20%  Similarity=0.192  Sum_probs=106.4

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--------ccCHHHHHHHHHHHhcCC-CCCCcceeEEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--------QGGELQFQTEVEMISMAV-HRNLLRLRGFCMT  356 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--------~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~  356 (419)
                      .++|...+.||+|+||.||+|... +|+.||||.++....        ....+.+.+|++++.+++ ||||+++++++..
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   95 (298)
T 1phk_A           16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   95 (298)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence            457888899999999999999974 689999999853321        112356889999999996 9999999999999


Q ss_pred             CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          357 PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       357 ~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .+..++||||+++|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus        96 ~~~~~lv~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~  148 (298)
T 1phk_A           96 NTFFFLVFDLMKKGELFDYLTEKV-------TLSEKETRKIMRALLEVICALHKL---NIVHR  148 (298)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             CCeEEEEEeccCCCcHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            999999999999999999997643       578889999999999999999999   99997

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.71  E-value=1.5e-17  Score=158.58  Aligned_cols=134  Identities=21%  Similarity=0.330  Sum_probs=117.5

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCC---------
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGK---------  139 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~---------  139 (419)
                      .+++.|+|++|.++ .+|..++++++|++|+|++|.++ .+|..++.+++|++|++++|++.+.+|..++.         
T Consensus       104 ~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~  181 (328)
T 4fcg_A          104 SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG  181 (328)
T ss_dssp             TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEE
T ss_pred             CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhcc
Confidence            46889999999999 88989999999999999999998 88999999999999999999998899988765         


Q ss_pred             CCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCCCCC
Q 014778          140 LSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPP  205 (419)
Q Consensus       140 l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~~~  205 (419)
                      +++|++|+|++|+++ .+|..++++++|++|++++|++++.++....+..++.+++++|.+.+..+
T Consensus       182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p  246 (328)
T 4fcg_A          182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP  246 (328)
T ss_dssp             STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCC
T ss_pred             CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhH
Confidence            899999999999998 88988999999999999999999866666777888889999988765443

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.71  E-value=1.2e-17  Score=157.88  Aligned_cols=122  Identities=20%  Similarity=0.165  Sum_probs=101.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...+.||+|+||+||+|... +|+.||||++..... ......+..|+..+.++ +||||++++++|.+.+..++||
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~  136 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT  136 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence            56888899999999999999975 799999999854321 12234556666665554 9999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+ +|+|.+++.....      .+++.++..++.||+.||+|||+.   +|+||
T Consensus       137 e~~-~~~L~~~~~~~~~------~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~  181 (311)
T 3p1a_A          137 ELC-GPSLQQHCEAWGA------SLPEAQVWGYLRDTLLALAHLHSQ---GLVHL  181 (311)
T ss_dssp             ECC-CCBHHHHHHHHCS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             ecc-CCCHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---CEecC
Confidence            999 6799998875431      588999999999999999999999   99997

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.71  E-value=9.5e-18  Score=155.70  Aligned_cols=127  Identities=18%  Similarity=0.277  Sum_probs=104.9

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEec--CCceeE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMT--PTERLL  362 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~l  362 (419)
                      .++|...+.||+|+||.||++... +|+.||+|.+..... ....+.+.+|+.++++++||||+++++++..  ....++
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   84 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   84 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence            356778899999999999999974 789999999964322 2234579999999999999999999998854  567899


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccc-----eecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSI-----LLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~-----IiHR  419 (419)
                      ||||+++|+|.+++.....   ....+++.++..++.|++.||+|||+.   +     |+||
T Consensus        85 v~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~  140 (279)
T 2w5a_A           85 VMEYCEGGDLASVITKGTK---ERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHR  140 (279)
T ss_dssp             EEECCTTEEHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCC
T ss_pred             EEeCCCCCCHHHHHHhhcc---cCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEe
Confidence            9999999999999975431   112488899999999999999999988   6     9997

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=2.7e-17  Score=158.96  Aligned_cols=146  Identities=25%  Similarity=0.262  Sum_probs=127.3

Q ss_pred             CCcceeEeCCC----------CCEEEEEcCCCCccccchhhhh-CCCCCCEEEcccCcccccCCccccCCCcCcEEeccc
Q 014778           58 CTWFHVTCNSE----------NSVTRVDLGNANLSGQLVSQLG-QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYL  126 (419)
Q Consensus        58 c~w~~v~c~~~----------~~~~~l~L~~~~l~g~~~~~~~-~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~  126 (419)
                      |.+..+.|...          ..++.|+|++|+|++..+..+. ++++|++|+|++|.|++..|..|..+++|++|+|++
T Consensus        18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   97 (361)
T 2xot_A           18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS   97 (361)
T ss_dssp             EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence            56888899731          3478999999999998888887 999999999999999987778899999999999999


Q ss_pred             cccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCC----CCccccccccccCCCCCC
Q 014778          127 NNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN----GSFSLFTPISFANNQLNN  202 (419)
Q Consensus       127 N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~----~~~~~~~~~~~~~n~~~~  202 (419)
                      |++++..+..|.++++|+.|+|++|++++..|..|.++++|+.|++++|++++..+..    ..+..++.+++++|.+..
T Consensus        98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A           98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            9999766677999999999999999999888999999999999999999999855543    457888999999998875


Q ss_pred             C
Q 014778          203 P  203 (419)
Q Consensus       203 ~  203 (419)
                      .
T Consensus       178 l  178 (361)
T 2xot_A          178 L  178 (361)
T ss_dssp             C
T ss_pred             c
Confidence            3

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.71  E-value=1.4e-17  Score=158.91  Aligned_cols=122  Identities=20%  Similarity=0.326  Sum_probs=105.8

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc-cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      +.|...+.||+|+||.||+|... +|+.||||++...... ...+.+.+|+.++.+++||||+++++++.+.+..++|||
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  104 (331)
T 4aaa_A           25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFE  104 (331)
T ss_dssp             GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEe
Confidence            46777899999999999999975 5899999998543222 124568899999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++++|.+++....       .+++..+..++.|++.||+|||+.   +|+||
T Consensus       105 ~~~~~~l~~~~~~~~-------~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~  148 (331)
T 4aaa_A          105 FVDHTILDDLELFPN-------GLDYQVVQKYLFQIINGIGFCHSH---NIIHR  148 (331)
T ss_dssp             CCSEEHHHHHHHSTT-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             cCCcchHHHHHhhcc-------CCCHHHHHHHHHHHHHHHHHHHHC---CEEcc
Confidence            999999998876543       588889999999999999999999   99997

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.71  E-value=1.3e-17  Score=159.06  Aligned_cols=119  Identities=17%  Similarity=0.189  Sum_probs=103.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      ++|...+.||+|+||.||+|.. .+|+.||||.+....   ..+.+.+|++++.++ +||||+++++++...+..++|||
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e   85 (330)
T 2izr_A            9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS---RAPQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE   85 (330)
T ss_dssp             TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC---SSCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred             CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEecccc---chHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence            4677889999999999999996 578999999985432   223688999999999 99999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+ +|+|.+++.....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus        86 ~~-~~~L~~~~~~~~~------~~~~~~~~~i~~qi~~~l~~LH~~---~iiHr  129 (330)
T 2izr_A           86 LL-GPSLEDLFDLCDR------TFSLKTVLMIAIQLISRMEYVHSK---NLIYR  129 (330)
T ss_dssp             CC-CCBHHHHHHHTTT------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             eC-CCCHHHHHHHcCC------CCCHHHHHHHHHHHHHHHHHHHhC---Ceecc
Confidence            99 8999999985421      588999999999999999999999   99998

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.71  E-value=1.4e-17  Score=154.91  Aligned_cols=120  Identities=18%  Similarity=0.326  Sum_probs=102.8

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEec---------
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT---------  356 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~---------  356 (419)
                      .++|...+.||+|+||.||+|... +|+.||+|.++...     ..+.+|++++.+++||||+++++++..         
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   84 (284)
T 2a19_B           10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN-----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS   84 (284)
T ss_dssp             HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS-----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred             ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc-----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence            346888899999999999999975 79999999985331     357899999999999999999998864         


Q ss_pred             -------CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          357 -------PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       357 -------~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                             ....++||||+++|+|.+++.....     ..+++..+..++.|++.||+|||+.   +|+||
T Consensus        85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~  146 (284)
T 2a19_B           85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRG-----EKLDKVLALELFEQITKGVDYIHSK---KLINR  146 (284)
T ss_dssp             ----CCEEEEEEEEECCCCSCBHHHHHHHGGG-----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             ccccccCcceEEEEEeccCCCCHHHHHhhccC-----CCCCHHHHHHHHHHHHHHHHHHHhC---Ceeec
Confidence                   3447899999999999999975421     1578889999999999999999999   99997

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.71  E-value=2.1e-17  Score=157.52  Aligned_cols=122  Identities=23%  Similarity=0.417  Sum_probs=104.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCC----EEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      ++|...+.||+|+||.||+|... +++    .||+|.++........+.+.+|+.++.+++||||+++++++.... .++
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~   93 (327)
T 3lzb_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQL   93 (327)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EEE
T ss_pred             hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ceE
Confidence            46778899999999999999963 454    468888865545556778999999999999999999999998764 789


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+||+++|+|.+++.....      .+++..+..++.|++.||+|||+.   +|+||
T Consensus        94 v~~~~~~g~L~~~l~~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~  141 (327)
T 3lzb_A           94 ITQLMPFGCLLDYVREHKD------NIGSQYLLNWCVQIAKGMNYLEDR---RLVHR  141 (327)
T ss_dssp             EECCCSSCBHHHHHHHTTT------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEEecCCCcHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHhhC---CCcCC
Confidence            9999999999999986432      578888999999999999999999   99997

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.71  E-value=2.2e-17  Score=154.29  Aligned_cols=120  Identities=22%  Similarity=0.344  Sum_probs=101.4

Q ss_pred             CCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEec----CCceeEE
Q 014778          290 FSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMT----PTERLLV  363 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~lv  363 (419)
                      |...+.||+|+||.||+|... ++..||+|.+..... ....+.+.+|+.++++++||||+++++++..    ....++|
T Consensus        28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv  107 (290)
T 1t4h_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV  107 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred             EEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEE
Confidence            455678999999999999974 688999999864332 2234679999999999999999999999865    3457999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccc--eecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSI--LLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~--IiHR  419 (419)
                      |||+++|+|.+++....       .+++..+..++.|++.||+|||+.   +  |+||
T Consensus       108 ~e~~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~  155 (290)
T 1t4h_A          108 TELMTSGTLKTYLKRFK-------VMKIKVLRSWCRQILKGLQFLHTR---TPPIIHR  155 (290)
T ss_dssp             EECCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCS
T ss_pred             EEecCCCCHHHHHHHcc-------CCCHHHHHHHHHHHHHHHHHHHcC---CCCEEEC
Confidence            99999999999997643       578888999999999999999988   6  9997

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.71  E-value=1.7e-17  Score=165.47  Aligned_cols=121  Identities=14%  Similarity=0.283  Sum_probs=94.8

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecC-----Cce
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTP-----TER  360 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~~  360 (419)
                      +.|...+.||+|+||+||+|... +|+.||||++..... ....+.+.+|+++|.+++|||||++++++...     ...
T Consensus        53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~  132 (458)
T 3rp9_A           53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDEL  132 (458)
T ss_dssp             TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred             CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceE
Confidence            56888899999999999999964 789999999854321 22345789999999999999999999999543     568


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+. |+|.++++...       .+++..+..++.||+.||+|||+.   +||||
T Consensus       133 ~lv~e~~~-~~L~~~~~~~~-------~l~~~~~~~~~~qi~~aL~~LH~~---~iiHr  180 (458)
T 3rp9_A          133 YVVLEIAD-SDFKKLFRTPV-------YLTELHIKTLLYNLLVGVKYVHSA---GILHR  180 (458)
T ss_dssp             EEEECCCS-EEHHHHHHSSC-------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCC
T ss_pred             EEEEeccc-cchhhhcccCC-------CCCHHHHHHHHHHHHHHHHHHHhC---CcCCC
Confidence            99999985 69999998654       588899999999999999999999   99998

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.71  E-value=1.5e-17  Score=169.37  Aligned_cols=145  Identities=24%  Similarity=0.308  Sum_probs=129.2

Q ss_pred             CCCcceeEeCCC------------CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEec
Q 014778           57 PCTWFHVTCNSE------------NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDL  124 (419)
Q Consensus        57 ~c~w~~v~c~~~------------~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~l  124 (419)
                      +|.|.|+ |+..            .+++.|+|++|++++..|..|+++++|++|+|++|.+++..|..|..+++|++|||
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence            5889888 7521            36999999999999988999999999999999999999888899999999999999


Q ss_pred             cccccCCCCCcccCCCCCCCEEEcccCcCcc-cCCccCcCCCCCcEEEcccCcCCCCCC--CCCCccccccccccCCCCC
Q 014778          125 YLNNLNGPIPTTLGKLSKLRFLRLNNNSLMG-EIPRSLTNVNSLQVLDLSNNKLTGDIP--TNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       125 s~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g-~~p~~l~~l~~L~~l~l~~N~l~g~~p--~~~~~~~~~~~~~~~n~~~  201 (419)
                      ++|++++..|..++++++|++|+|++|++++ .+|..++++++|++|++++|++.+.+|  ....+++++.+++++|.+.
T Consensus        82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~  161 (549)
T 2z81_A           82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR  161 (549)
T ss_dssp             TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence            9999998777779999999999999999987 578889999999999999999777776  3567788889999988876


Q ss_pred             C
Q 014778          202 N  202 (419)
Q Consensus       202 ~  202 (419)
                      .
T Consensus       162 ~  162 (549)
T 2z81_A          162 N  162 (549)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.71  E-value=1e-17  Score=158.37  Aligned_cols=133  Identities=23%  Similarity=0.382  Sum_probs=103.1

Q ss_pred             HHHHhhCCCCCCeeCcCCceEEEEEEeC----CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecC
Q 014778          283 LQVATDNFSNRNILGRGGFGKVYKGRLT----DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTP  357 (419)
Q Consensus       283 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~  357 (419)
                      +....+.|...+.||+|+||.||+|...    ++..||||.++.... ....+.|.+|+.++++++||||+++++++...
T Consensus        29 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~  108 (313)
T 3brb_A           29 VVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEM  108 (313)
T ss_dssp             TBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC-
T ss_pred             cccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeec
Confidence            3345567888899999999999999863    345899999964322 22245799999999999999999999999876


Q ss_pred             Cc-----eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 TE-----RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~~-----~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +.     .++||||+++|+|.+++...... .....+++.++..++.||++||+|||+.   +|+||
T Consensus       109 ~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~  171 (313)
T 3brb_A          109 SSQGIPKPMVILPFMKYGDLHTYLLYSRLE-TGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHR  171 (313)
T ss_dssp             ------CEEEEEECCTTCBHHHHHHHTTBT-TSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCC
T ss_pred             cccCCcccEEEEecccCCCHHHHHHHhhhh-cCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            53     49999999999999998543211 1123688999999999999999999999   99997

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.71  E-value=5.8e-17  Score=142.40  Aligned_cols=126  Identities=25%  Similarity=0.306  Sum_probs=81.1

Q ss_pred             EEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCc
Q 014778           73 RVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNS  152 (419)
Q Consensus        73 ~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~  152 (419)
                      .+++++|+++ .+|..+.  ++|++|+|++|.|+ .+|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|+
T Consensus        14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            3455555555 3444332  46677777777776 566667777777777777777765555666777777777777777


Q ss_pred             CcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCC
Q 014778          153 LMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       153 l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~  202 (419)
                      +++..|..|..+++|+.|++++|++++..+. ...+..++.+++++|++.+
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            7766666677777777777777777655443 3455666666777766653

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.70  E-value=3.5e-17  Score=153.44  Aligned_cols=123  Identities=22%  Similarity=0.400  Sum_probs=103.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      ++|...+.||+|+||.||+|... +|+.||||+++.... ....+.+.+|+.++++++||||+++++++..++..++|||
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (299)
T 2r3i_A            3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   82 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence            46778899999999999999975 789999999964332 2234678999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |++ |+|.+++.....     ..+++..+..++.|+++||+|||+.   +|+||
T Consensus        83 ~~~-~~L~~~~~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  127 (299)
T 2r3i_A           83 FLH-QDLKKFMDASAL-----TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHR  127 (299)
T ss_dssp             CCS-EEHHHHHHHTTT-----TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             ccc-CCHHHHHHhhhc-----cCCCHHHHHHHHHHHHHHHHHHHHC---CccCC
Confidence            998 699999875431     1477788899999999999999999   99997

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.70  E-value=1.3e-17  Score=160.76  Aligned_cols=132  Identities=15%  Similarity=0.208  Sum_probs=111.2

Q ss_pred             cccHHHHHHHhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCC-----CCCCcce
Q 014778          277 RFSLRELQVATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-----HRNLLRL  350 (419)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-----H~niv~l  350 (419)
                      .+++.+.....+.|...+.||+|+||.||+|+. .+++.||||+++...  ...+.+..|++++..++     |||||++
T Consensus        24 ~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~e~~~l~~l~~~~~~h~~iv~~  101 (360)
T 3llt_A           24 HFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIK--KYTRSAKIEADILKKIQNDDINNNNIVKY  101 (360)
T ss_dssp             SCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCH--HHHHHHHHHHHHHHHTCCCSTTGGGBCCE
T ss_pred             eeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccch--hhhhhhHHHHHHHHHhcccCCCCCCeecc
Confidence            445555555567899999999999999999997 478999999996321  23456788999999886     9999999


Q ss_pred             eEEEecCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          351 RGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       351 ~g~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++++...+..++||||+ +|+|.+++.....     ..+++.++..++.||+.||+|||+.   +|+||
T Consensus       102 ~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHr  161 (360)
T 3llt_A          102 HGKFMYYDHMCLIFEPL-GPSLYEIITRNNY-----NGFHIEDIKLYCIEILKALNYLRKM---SLTHT  161 (360)
T ss_dssp             EEEEEETTEEEEEECCC-CCBHHHHHHHTTT-----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             cceeeECCeeEEEEcCC-CCCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeC
Confidence            99999999999999999 8999999986532     1478888999999999999999999   99998

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.70  E-value=1.5e-17  Score=142.67  Aligned_cols=133  Identities=23%  Similarity=0.271  Sum_probs=118.7

Q ss_pred             CCEEEEEcCCCCcc-ccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           69 NSVTRVDLGNANLS-GQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        69 ~~~~~l~L~~~~l~-g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      .+++.|+|++|+++ +.+|..+..+++|++|+|++|.+++.  ..+..+++|++|++++|++++.+|..+.++++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            56899999999998 88999999999999999999999965  7899999999999999999988898888899999999


Q ss_pred             cccCcCccc-CCccCcCCCCCcEEEcccCcCCCCCC----CCCCccccccccccCCCCCCC
Q 014778          148 LNNNSLMGE-IPRSLTNVNSLQVLDLSNNKLTGDIP----TNGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       148 l~~N~l~g~-~p~~l~~l~~L~~l~l~~N~l~g~~p----~~~~~~~~~~~~~~~n~~~~~  203 (419)
                      |++|++++. .+..+..+++|+.|++++|++++..+    ....+..++.+++++|.....
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            999999863 33789999999999999999998776    456788899999999876543

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.70  E-value=2.6e-17  Score=162.92  Aligned_cols=122  Identities=16%  Similarity=0.257  Sum_probs=105.0

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecC-----Cc
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTP-----TE  359 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~  359 (419)
                      .++|...+.||+|+||.||+|... +|+.||||+++.... ....+.+.+|++++++++||||+++++++...     ..
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  104 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE  104 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence            357888899999999999999964 688999999964321 22346789999999999999999999999776     56


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++||||++ |+|.++++...       .+++..+..++.||++||+|||+.   +|+||
T Consensus       105 ~~lv~e~~~-~~L~~~~~~~~-------~l~~~~~~~i~~qil~aL~~LH~~---givHr  153 (432)
T 3n9x_A          105 LYIVLEIAD-SDLKKLFKTPI-------FLTEEHIKTILYNLLLGENFIHES---GIIHR  153 (432)
T ss_dssp             EEEEEECCS-EEHHHHHHSSC-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EEEEEecCC-cCHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCCCC
Confidence            899999997 59999998654       588899999999999999999999   99998

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.70  E-value=3.6e-17  Score=154.56  Aligned_cols=122  Identities=20%  Similarity=0.314  Sum_probs=101.8

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ..+.|...+.||+|+||.||+|... +|+.||||.+...   ...+.+.+|+.++.+++||||+++++++...+..++||
T Consensus        27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~---~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~  103 (314)
T 3com_A           27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE---SDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVM  103 (314)
T ss_dssp             ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETT---SCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCch---HHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEe
Confidence            4567888899999999999999975 6899999998543   23467999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....      ..+++.++..++.|++.||+|||+.   +|+||
T Consensus       104 e~~~~~~L~~~~~~~~------~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~  149 (314)
T 3com_A          104 EYCGAGSVSDIIRLRN------KTLTEDEIATILQSTLKGLEYLHFM---RKIHR  149 (314)
T ss_dssp             ECCTTEEHHHHHHHHT------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             ecCCCCCHHHHHHhcC------CCCCHHHHHHHHHHHHHHHHHHHhC---CCcCC
Confidence            9999999999987322      1578889999999999999999999   99997

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.70  E-value=2.1e-17  Score=153.44  Aligned_cols=121  Identities=22%  Similarity=0.358  Sum_probs=102.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecC-CceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP-TERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-~~~~lv~e  365 (419)
                      .++|...+.||+|+||.||++... |+.||||.++..   ...+.|.+|++++.+++||||+++++++.+. +..++|||
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e   95 (278)
T 1byg_A           20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND---ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE   95 (278)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCC---C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEEC
T ss_pred             hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecch---hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEe
Confidence            457788899999999999999984 889999999643   2356799999999999999999999998665 46899999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++.....     ..+++..+..++.|+++||+|||+.   +|+||
T Consensus        96 ~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  141 (278)
T 1byg_A           96 YMAKGSLVDYLRSRGR-----SVLGGDCLLKFSLDVCEAMEYLEGN---NFVHR  141 (278)
T ss_dssp             CCTTEEHHHHHHHHHH-----HHCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             cCCCCCHHHHHHhccc-----ccCCHHHHHHHHHHHHHHHHHHHhC---Ccccc
Confidence            9999999999975431     1367888999999999999999999   99997

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.70  E-value=2.3e-17  Score=161.09  Aligned_cols=121  Identities=15%  Similarity=0.174  Sum_probs=104.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCC--CCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAV--HRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ..|...+.||+|+||.||++...+++.||||++.... .....+.|.+|+.++.+++  |||||++++++...+..++||
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~  135 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM  135 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence            3588889999999999999998789999999985432 2223467999999999996  599999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      | +.+|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus       136 E-~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~aL~~lH~~---~ivHr  179 (390)
T 2zmd_A          136 E-CGNIDLNSWLKKKK-------SIDPWERKSYWKNMLEAVHTIHQH---GIVHS  179 (390)
T ss_dssp             E-CCSEEHHHHHHHCS-------SCCHHHHHHHHHHHHHHHHHHHTT---TCCCC
T ss_pred             e-cCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            9 56789999998654       577788999999999999999999   99998

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.70  E-value=1.3e-17  Score=174.38  Aligned_cols=120  Identities=15%  Similarity=0.267  Sum_probs=101.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC--CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc-----e
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT--DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE-----R  360 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~--~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~-----~  360 (419)
                      +.|...+.||+|+||.||+|...  +|+.||||.+...........|.+|++++.+++|||||++++++...+.     .
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~  159 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG  159 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence            56888899999999999999974  6899999998644333334578999999999999999999999988665     6


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++|+|.+++..         .+++.+++.++.||++||+|||+.   +||||
T Consensus       160 ~lv~E~~~g~~L~~~~~~---------~l~~~~~~~~~~qi~~aL~~lH~~---giiHr  206 (681)
T 2pzi_A          160 YIVMEYVGGQSLKRSKGQ---------KLPVAEAIAYLLEILPALSYLHSI---GLVYN  206 (681)
T ss_dssp             EEEEECCCCEECC----C---------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EEEEEeCCCCcHHHHHhC---------CCCHHHHHHHHHHHHHHHHHHHHC---CCeec
Confidence            999999999999887654         478899999999999999999999   99998

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.70  E-value=9.6e-17  Score=153.42  Aligned_cols=120  Identities=21%  Similarity=0.269  Sum_probs=104.5

Q ss_pred             HHHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhc--CCCCCCcceeEEEecCC---
Q 014778          284 QVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISM--AVHRNLLRLRGFCMTPT---  358 (419)
Q Consensus       284 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~--l~H~niv~l~g~~~~~~---  358 (419)
                      ....++|...+.||+|+||.||+|+. +|+.||||.+...    ....+.+|.+++..  ++||||+++++++...+   
T Consensus        38 ~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~----~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~  112 (342)
T 1b6c_B           38 RTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR----EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTW  112 (342)
T ss_dssp             HHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG----GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSC
T ss_pred             ccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch----hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCcc
Confidence            33456799999999999999999998 5899999999533    34578889998887  79999999999998876   


Q ss_pred             -ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhh--------hccccceecC
Q 014778          359 -ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAK--------YSCVSILLFC  419 (419)
Q Consensus       359 -~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH--------~~~~p~IiHR  419 (419)
                       ..++||||+++|+|.++++..        .+++.++..++.|++.||+|||        +.   +|+||
T Consensus       113 ~~~~lv~e~~~~g~L~~~l~~~--------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~  171 (342)
T 1b6c_B          113 TQLWLVSDYHEHGSLFDYLNRY--------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHR  171 (342)
T ss_dssp             CCEEEEECCCTTCBHHHHHHHC--------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECS
T ss_pred             ceeEEEEeecCCCcHHHHHhcc--------CccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeC
Confidence             789999999999999999754        4788899999999999999999        66   99997

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.70  E-value=3.3e-17  Score=157.25  Aligned_cols=124  Identities=19%  Similarity=0.315  Sum_probs=100.4

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccccc----CHHHHHHHHHHHhcCCCCCCcceeEEEecCCce
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQG----GELQFQTEVEMISMAVHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~----~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  360 (419)
                      ..+.|...+.||+|+||.||+|... +|+.||||+++......    ..+.+.+|++++.+++||||+++++++...+..
T Consensus         8 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   87 (346)
T 1ua2_A            8 RAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNI   87 (346)
T ss_dssp             -----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCC
T ss_pred             HhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCce
Confidence            3567888899999999999999974 68999999996432211    124688999999999999999999999999999


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++ +|.+++.....      .+++.++..++.|+++||+|||+.   +|+||
T Consensus        88 ~lv~e~~~~-~l~~~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~  136 (346)
T 1ua2_A           88 SLVFDFMET-DLEVIIKDNSL------VLTPSHIKAYMLMTLQGLEYLHQH---WILHR  136 (346)
T ss_dssp             EEEEECCSE-EHHHHHTTCCS------SCCSSHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             EEEEEcCCC-CHHHHHHhcCc------CCCHHHHHHHHHHHHHHHHHHHHC---CEECC
Confidence            999999986 89998876532      477788899999999999999999   99997

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.70  E-value=3e-17  Score=153.39  Aligned_cols=122  Identities=21%  Similarity=0.316  Sum_probs=101.6

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ..+.|...+.||+|+||.||+|+..  ..||||.++.... ....+.|.+|++++++++||||+++++++ ..+..++||
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~   98 (289)
T 3og7_A           22 PDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVT   98 (289)
T ss_dssp             CTTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEE
T ss_pred             CccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEE
Confidence            3457888899999999999999864  3599999964332 22346799999999999999999999976 455689999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.++++....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus        99 e~~~~~~L~~~l~~~~~------~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~  144 (289)
T 3og7_A           99 QWCEGSSLYHHLHASET------KFEMKKLIDIARQTARGMDYLHAK---SIIHR  144 (289)
T ss_dssp             ECCCEEEHHHHHTTC---------CCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EecCCCcHHHHHhhccC------CCCHHHHHHHHHHHHHHHHHHHhC---Ccccc
Confidence            99999999999975432      588889999999999999999999   99997

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.70  E-value=5.4e-17  Score=154.77  Aligned_cols=121  Identities=20%  Similarity=0.281  Sum_probs=102.1

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcC--CCCCCcceeEEEecC----Cc
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMA--VHRNLLRLRGFCMTP----TE  359 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l--~H~niv~l~g~~~~~----~~  359 (419)
                      ..++|...+.||+|+||.||+|+.. |+.||||++...    ....+.+|.+++...  +||||+++++++...    ..
T Consensus        35 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~  109 (337)
T 3mdy_A           35 IAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT----EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQ  109 (337)
T ss_dssp             HHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCE
T ss_pred             cccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc----ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCc
Confidence            4467899999999999999999985 889999998432    234566666666654  999999999999887    67


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhcc-----ccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSC-----VSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~-----~p~IiHR  419 (419)
                      .++||||+++|+|.++++..        .+++.++..++.|++.||+|||+.+     +++|+||
T Consensus       110 ~~lv~e~~~~g~L~~~l~~~--------~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~  166 (337)
T 3mdy_A          110 LYLITDYHENGSLYDYLKST--------TLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHR  166 (337)
T ss_dssp             EEEEECCCTTCBHHHHHHHC--------CBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECS
T ss_pred             eEEEEeccCCCcHHHHhhcc--------CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEec
Confidence            89999999999999999754        4788899999999999999999763     5689997

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.70  E-value=5.3e-17  Score=145.72  Aligned_cols=115  Identities=18%  Similarity=0.234  Sum_probs=108.4

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..+++.|+|++|.|++..+..|.++++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..+.++++|+.|+
T Consensus        56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  135 (220)
T 2v70_A           56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLS  135 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEE
T ss_pred             CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEE
Confidence            45799999999999998888999999999999999999987777899999999999999999988899999999999999


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCCCC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP  182 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p  182 (419)
                      |++|++++..|..|..+++|+.|++++|++++..+
T Consensus       136 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A          136 LYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            99999999889999999999999999999998765

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.70  E-value=4.2e-17  Score=154.14  Aligned_cols=119  Identities=18%  Similarity=0.200  Sum_probs=96.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEec----------
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT----------  356 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----------  356 (419)
                      +.|...+.||+|+||.||+|... +|+.||||++... .....+++.+|++++++++||||+++++++..          
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   89 (320)
T 2i6l_A           11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLT-DPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG   89 (320)
T ss_dssp             TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECC-SHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred             CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecC-ChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence            46777899999999999999975 5899999998533 22335678999999999999999999998843          


Q ss_pred             ----CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          357 ----PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       357 ----~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                          ....++||||++ |+|.++++..        .+++..+..++.|++.||+|||+.   +|+||
T Consensus        90 ~~~~~~~~~lv~e~~~-~~L~~~~~~~--------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~  144 (320)
T 2i6l_A           90 SLTELNSVYIVQEYME-TDLANVLEQG--------PLLEEHARLFMYQLLRGLKYIHSA---NVLHR  144 (320)
T ss_dssp             -CCSCSEEEEEEECCS-EEHHHHHTTC--------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCC
T ss_pred             cccccCceeEEeeccC-CCHHHHhhcC--------CccHHHHHHHHHHHHHHHHHHHhC---CEecC
Confidence                356799999998 6999999753        477888899999999999999999   99997

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.70  E-value=3.3e-17  Score=170.77  Aligned_cols=124  Identities=19%  Similarity=0.244  Sum_probs=108.3

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCcee
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~  361 (419)
                      ..++|...++||+|+||.||+|+.. +++.||||+++...  .....+.+..|..++..+ +||||+++++++.+.+..+
T Consensus       339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~  418 (674)
T 3pfq_A          339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY  418 (674)
T ss_dssp             -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred             cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence            4567888899999999999999974 68899999996432  233456788999999987 7999999999999999999


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++|+|.++++...       .+++.++..++.||+.||+|||+.   +||||
T Consensus       419 lV~E~~~gg~L~~~l~~~~-------~~~~~~~~~~~~qi~~aL~~LH~~---gIiHr  466 (674)
T 3pfq_A          419 FVMEYVNGGDLMYHIQQVG-------RFKEPHAVFYAAEIAIGLFFLQSK---GIIYR  466 (674)
T ss_dssp             EEEECCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---SEECC
T ss_pred             EEEeCcCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeEec
Confidence            9999999999999998653       588899999999999999999999   99998

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.69  E-value=3.3e-17  Score=157.38  Aligned_cols=121  Identities=16%  Similarity=0.275  Sum_probs=103.9

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecC-----Cce
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP-----TER  360 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~~  360 (419)
                      .++|...+.||+|+||.||+|... +|+.||||+++..........+.+|++++++++||||+++++++...     ...
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   89 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV   89 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence            356788899999999999999975 68999999996433333355788999999999999999999998764     568


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||++ |+|.+++...        .+++.++..++.|++.||+|||+.   +|+||
T Consensus        90 ~lv~e~~~-~~L~~~~~~~--------~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~  136 (353)
T 2b9h_A           90 YIIQELMQ-TDLHRVISTQ--------MLSDDHIQYFIYQTLRAVKVLHGS---NVIHR  136 (353)
T ss_dssp             EEEECCCS-EEHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEEEeccC-ccHHHHHhhc--------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            99999998 6999998753        478889999999999999999999   99997

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.69  E-value=9.7e-17  Score=165.45  Aligned_cols=149  Identities=19%  Similarity=0.265  Sum_probs=129.3

Q ss_pred             CCCCCc----ceeEeCC----------CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCc
Q 014778           55 VNPCTW----FHVTCNS----------ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLV  120 (419)
Q Consensus        55 ~~~c~w----~~v~c~~----------~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~  120 (419)
                      .+||.+    ..+.|..          ..+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|+
T Consensus         4 ~~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~   83 (606)
T 3vq2_A            4 LNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS   83 (606)
T ss_dssp             --CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             CCCceecCCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence            467765    3577763          24689999999999998888999999999999999999988888999999999


Q ss_pred             EEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCC-CCCC-CCCccccccccccCC
Q 014778          121 SLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTG-DIPT-NGSFSLFTPISFANN  198 (419)
Q Consensus       121 ~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g-~~p~-~~~~~~~~~~~~~~n  198 (419)
                      +|+|++|++++..|..|+++++|++|+|++|++++..|..++++++|++|++++|++++ .+|. ...+++++.+++++|
T Consensus        84 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A           84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             EEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             EeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence            99999999998889999999999999999999997777889999999999999999986 5564 667888899999998


Q ss_pred             CCCCC
Q 014778          199 QLNNP  203 (419)
Q Consensus       199 ~~~~~  203 (419)
                      .+...
T Consensus       164 ~l~~~  168 (606)
T 3vq2_A          164 YIQTI  168 (606)
T ss_dssp             CCCEE
T ss_pred             cceec
Confidence            87653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.69  E-value=7.9e-18  Score=141.36  Aligned_cols=126  Identities=21%  Similarity=0.261  Sum_probs=110.5

Q ss_pred             CCEEEEEcCCCCcc-ccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           69 NSVTRVDLGNANLS-GQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        69 ~~~~~l~L~~~~l~-g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      .+++.|++++|+++ +.+|..+..+++|++|+|++|.+++.  ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            46899999999999 88999999999999999999999965  7899999999999999999988999888899999999


Q ss_pred             cccCcCccc-CCccCcCCCCCcEEEcccCcCCCCCC----CCCCcccccccccc
Q 014778          148 LNNNSLMGE-IPRSLTNVNSLQVLDLSNNKLTGDIP----TNGSFSLFTPISFA  196 (419)
Q Consensus       148 l~~N~l~g~-~p~~l~~l~~L~~l~l~~N~l~g~~p----~~~~~~~~~~~~~~  196 (419)
                      +++|++++. .|..+..+++|+.|++++|++++..+    ....+.+++.++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            999999873 45889999999999999999998765    23445566666554

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.69  E-value=1.2e-17  Score=158.60  Aligned_cols=132  Identities=22%  Similarity=0.355  Sum_probs=109.9

Q ss_pred             ccHHHHHHHhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEe
Q 014778          278 FSLRELQVATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCM  355 (419)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~  355 (419)
                      +++.++....+.|...+.||+|+||.||+|.. .+|+.||||.+...  ....+.+.+|+.++.++ +||||+++++++.
T Consensus        14 ~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~--~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   91 (326)
T 2x7f_A           14 IDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT--GDEEEEIKQEINMLKKYSHHRNIATYYGAFI   91 (326)
T ss_dssp             --CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC--SSTTHHHHHHHHHHHHHCCSTTBCCEEEEEE
T ss_pred             ccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecC--cccHHHHHHHHHHHHhccCCCCeeeeeeEEe
Confidence            33344445677888899999999999999997 47899999998533  23456899999999998 8999999999997


Q ss_pred             c------CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          356 T------PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       356 ~------~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .      .+..++||||+++|+|.+++.....     ..+++..+..++.||+.||+|||+.   +|+||
T Consensus        92 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~  153 (326)
T 2x7f_A           92 KKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKG-----NTLKEEWIAYICREILRGLSHLHQH---KVIHR  153 (326)
T ss_dssp             ECC--CCCCEEEEEEECCTTEEHHHHHHHSGG-----GCCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             eccCccccceEEEEEEcCCCCcHHHHHHhccc-----CCCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            7      4578999999999999999986431     1577888899999999999999999   99997

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.69  E-value=4e-17  Score=159.90  Aligned_cols=117  Identities=16%  Similarity=0.133  Sum_probs=97.8

Q ss_pred             CCCCC-CeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHh-cCCCCCCcceeEEEec----CCcee
Q 014778          289 NFSNR-NILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMIS-MAVHRNLLRLRGFCMT----PTERL  361 (419)
Q Consensus       289 ~~~~~-~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~-~l~H~niv~l~g~~~~----~~~~~  361 (419)
                      +|... ++||+|+||+||++... +|+.||||+++.      ...+.+|++++. ..+||||+++++++..    ....+
T Consensus        62 ~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~------~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~  135 (400)
T 1nxk_A           62 DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL  135 (400)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             cceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc------chhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEE
Confidence            45444 68999999999999974 689999999842      236788888874 5689999999998865    45689


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++|+|.++++....     ..+++.++..++.||+.||+|||+.   +|+||
T Consensus       136 lv~E~~~gg~L~~~l~~~~~-----~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHr  185 (400)
T 1nxk_A          136 IVMECLDGGELFSRIQDRGD-----QAFTEREASEIMKSIGEAIQYLHSI---NIAHR  185 (400)
T ss_dssp             EEEECCCSEEHHHHHHCC--------CCBHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EEEEeCCCCcHHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            99999999999999986531     1588999999999999999999999   99998

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.69  E-value=6e-17  Score=154.23  Aligned_cols=125  Identities=18%  Similarity=0.255  Sum_probs=105.9

Q ss_pred             hhCCCCC-CeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCC-CCCCcceeEEEecCCceeE
Q 014778          287 TDNFSNR-NILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAV-HRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       287 ~~~~~~~-~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~l  362 (419)
                      .+.|... +.||+|+||.||+|... +|+.||||.++.... .....++.+|+.++..++ ||||+++++++...+..++
T Consensus        27 ~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~l  106 (327)
T 3lm5_A           27 NNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIIL  106 (327)
T ss_dssp             HHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEE
Confidence            3445554 78999999999999975 689999999964332 234678999999999984 6999999999999999999


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||+++|+|.+++.....     ..+++.++..++.|++.||+|||+.   +|+||
T Consensus       107 v~e~~~~~~L~~~~~~~~~-----~~~~~~~~~~i~~ql~~~L~~LH~~---givH~  155 (327)
T 3lm5_A          107 ILEYAAGGEIFSLCLPELA-----EMVSENDVIRLIKQILEGVYYLHQN---NIVHL  155 (327)
T ss_dssp             EEECCTTEEGGGGGSSCC------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEEecCCCcHHHHHHHhcc-----cCCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            9999999999999865421     2588889999999999999999999   99997

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.69  E-value=7.4e-18  Score=163.80  Aligned_cols=129  Identities=12%  Similarity=0.114  Sum_probs=102.0

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc--cccCHHHHHHHH---HHHhcCCCCCCccee-------EE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER--TQGGELQFQTEV---EMISMAVHRNLLRLR-------GF  353 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~f~~E~---~~l~~l~H~niv~l~-------g~  353 (419)
                      .+.|...+.||+|+||.||+|+. .+|+.||||++....  .....+.|.+|+   +.+++++|||||+++       ++
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            45677789999999999999996 579999999996332  222346799999   566677899999998       66


Q ss_pred             EecCC-----------------ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccce
Q 014778          354 CMTPT-----------------ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSIL  416 (419)
Q Consensus       354 ~~~~~-----------------~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~I  416 (419)
                      +.+++                 ..++||||+ +|+|.+++............+++..+..++.||+.||+|||+.   +|
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i  227 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GL  227 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---Ce
Confidence            65543                 278999999 6899999986532222233567788889999999999999999   99


Q ss_pred             ecC
Q 014778          417 LFC  419 (419)
Q Consensus       417 iHR  419 (419)
                      +||
T Consensus       228 vHr  230 (377)
T 3byv_A          228 VHT  230 (377)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            998

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.69  E-value=4e-17  Score=169.57  Aligned_cols=125  Identities=17%  Similarity=0.236  Sum_probs=105.4

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEeC----CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCce
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRLT----DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  360 (419)
                      ...+.|...+.||+|+||.||+|.+.    .+..||||.++........+.|.+|+.++++++||||++++|++. ++..
T Consensus       387 i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~  465 (656)
T 2j0j_A          387 IQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV  465 (656)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSC
T ss_pred             cccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCce
Confidence            34466777889999999999999974    245799999865433333567999999999999999999999985 4568


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++|+|.++++....      .+++..+..++.|+++||+|||+.   +|+||
T Consensus       466 ~lv~E~~~~g~L~~~l~~~~~------~l~~~~~~~i~~qi~~aL~~LH~~---givHr  515 (656)
T 2j0j_A          466 WIIMELCTLGELRSFLQVRKF------SLDLASLILYAYQLSTALAYLESK---RFVHR  515 (656)
T ss_dssp             EEEEECCTTCBHHHHHHHTTT------TCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEEEEcCCCCcHHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHhC---Ccccc
Confidence            999999999999999975431      478888999999999999999999   99998

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.69  E-value=9.3e-17  Score=152.78  Aligned_cols=115  Identities=17%  Similarity=0.274  Sum_probs=101.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCC-CCCCcceeEEEec--CCceeEE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-HRNLLRLRGFCMT--PTERLLV  363 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~--~~~~~lv  363 (419)
                      ++|...+.||+|+||.||+|.. .+++.||||.++.    ...+.+.+|++++.+++ ||||+++++++..  ....++|
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~----~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv  111 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP----VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV  111 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS----CCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc----cchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence            5678889999999999999996 5789999999853    23568999999999997 9999999999988  5668999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.++++          .+++.++..++.|++.||+|||+.   +|+||
T Consensus       112 ~e~~~~~~l~~~~~----------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~  154 (330)
T 3nsz_A          112 FEHVNNTDFKQLYQ----------TLTDYDIRFYMYEILKALDYCHSM---GIMHR  154 (330)
T ss_dssp             EECCCCCCHHHHGG----------GCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EeccCchhHHHHHH----------hCCHHHHHHHHHHHHHHHHHHHhC---CeeeC
Confidence            99999999999885          367778889999999999999999   99997

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.69  E-value=9.6e-17  Score=159.58  Aligned_cols=136  Identities=24%  Similarity=0.252  Sum_probs=123.9

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      ..++.|+|++|.+++.+|..++.+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..|..+.++++|+.|+|
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  354 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL  354 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence            46899999999999999999999999999999999999888889999999999999999999888889999999999999


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNNPP  204 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~~~  204 (419)
                      ++|++++..|..+..+++|++|++++|++++.++. ...++.++.+++++|++.+..
T Consensus       355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence            99999988899999999999999999999986664 367788999999999887643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.69  E-value=2.4e-16  Score=146.13  Aligned_cols=136  Identities=24%  Similarity=0.215  Sum_probs=118.6

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..+++.|+|++|.+++..+..++.+++|++|+|++|.+++..|..+..+++|++|++++|++++..|..++++++|+.|+
T Consensus        84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  163 (272)
T 3rfs_A           84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD  163 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEE
Confidence            35789999999999988778889999999999999999977777789999999999999999976666778999999999


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCCC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~~  203 (419)
                      |++|++++..|..+..+++|+.|++++|++++.+|. ...+..++.+++++|++.+.
T Consensus       164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence            999999987777789999999999999999987775 46778889999999987643

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.69  E-value=3.7e-17  Score=159.19  Aligned_cols=124  Identities=15%  Similarity=0.258  Sum_probs=98.3

Q ss_pred             HHHhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecC-----
Q 014778          284 QVATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP-----  357 (419)
Q Consensus       284 ~~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----  357 (419)
                      ....+.|...+.||+|+||.||+|.. .+|+.||||++.....     ...+|+++++.++|||||++++++...     
T Consensus         3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~-----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~   77 (383)
T 3eb0_A            3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR-----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEP   77 (383)
T ss_dssp             ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT-----SCCHHHHHHTTCCCTTBCCEEEEEEEC-----
T ss_pred             ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc-----hHHHHHHHHHHcCCCCccchhheeeecCcccc
Confidence            34566788889999999999999996 5799999999854322     234799999999999999999998543     


Q ss_pred             ---------------------------------CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHH
Q 014778          358 ---------------------------------TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQS  404 (419)
Q Consensus       358 ---------------------------------~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~g  404 (419)
                                                       ...++||||++ |+|.+.++....   ....+++..+..++.||++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~---~~~~l~~~~~~~i~~qi~~a  153 (383)
T 3eb0_A           78 KPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIR---SGRSIPMNLISIYIYQLFRA  153 (383)
T ss_dssp             --------------------------------CCEEEEEECCCS-EEHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHH
Confidence                                             23789999999 588887764211   11258888999999999999


Q ss_pred             HHHhhhccccceecC
Q 014778          405 LHFAKYSCVSILLFC  419 (419)
Q Consensus       405 l~yLH~~~~p~IiHR  419 (419)
                      |+|||+.   +|+||
T Consensus       154 L~~LH~~---gi~H~  165 (383)
T 3eb0_A          154 VGFIHSL---GICHR  165 (383)
T ss_dssp             HHHHHTT---TEECS
T ss_pred             HHHHHHC---cCccC
Confidence            9999999   99998

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.69  E-value=9.1e-17  Score=151.06  Aligned_cols=124  Identities=20%  Similarity=0.293  Sum_probs=102.1

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc---ccCHHHHHHHHHHHhcCCCCCCcceeEEEec--CCce
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT---QGGELQFQTEVEMISMAVHRNLLRLRGFCMT--PTER  360 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~  360 (419)
                      .++|...+.||+|+||.||++.. .+++.||||.++....   ....+.+.+|+.++.+++||||+++++++..  .+..
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence            35788899999999999999997 4689999999964321   2235679999999999999999999999854  4578


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++| |.+++.....     ..+++.++..++.||++||+|||+.   +|+||
T Consensus        84 ~lv~e~~~~~-l~~~~~~~~~-----~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~  133 (305)
T 2wtk_C           84 YMVMEYCVCG-MQEMLDSVPE-----KRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHK  133 (305)
T ss_dssp             EEEEECCSEE-HHHHHHHSTT-----CSCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEEehhccCC-HHHHHHhCcc-----cccCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            9999999986 7777764321     1578889999999999999999999   99997

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.69  E-value=8.5e-17  Score=154.60  Aligned_cols=122  Identities=24%  Similarity=0.427  Sum_probs=103.5

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecC--------
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTP--------  357 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--------  357 (419)
                      ++|...+.||+|+||.||+|+. .+|+.||||++..... ......+.+|++++..++||||+++++++...        
T Consensus        17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   96 (351)
T 3mi9_A           17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK   96 (351)
T ss_dssp             GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------
T ss_pred             cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCC
Confidence            5688889999999999999997 5789999999854332 22356789999999999999999999999874        


Q ss_pred             CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +..++||||+++ +|.+.+.....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus        97 ~~~~lv~e~~~~-~l~~~l~~~~~------~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~  148 (351)
T 3mi9_A           97 GSIYLVFDFCEH-DLAGLLSNVLV------KFTLSEIKRVMQMLLNGLYYIHRN---KILHR  148 (351)
T ss_dssp             CEEEEEEECCSE-EHHHHHHCTTS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             ceEEEEEeccCC-CHHHHHhhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeCC
Confidence            457999999985 78887765432      588889999999999999999999   99998

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.69  E-value=1.7e-16  Score=147.33  Aligned_cols=133  Identities=18%  Similarity=0.203  Sum_probs=116.1

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN  149 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~  149 (419)
                      .++.|+|++|++++..+..|.++++|++|+|++|.+++..+..+..+++|++|+|++|++++..|..+.++++|+.|+++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  108 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  108 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence            58999999999998877789999999999999999997777789999999999999999997777889999999999999


Q ss_pred             cCcCcccCCccCcCCCCCcEEEcccCcCCC-CCC-CCCCccccccccccCCCCCC
Q 014778          150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTG-DIP-TNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       150 ~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g-~~p-~~~~~~~~~~~~~~~n~~~~  202 (419)
                      +|++++..+..+..+++|++|++++|++++ .+| ....+++++.+++++|.+..
T Consensus       109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A          109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence            999987777789999999999999999987 345 45667788888998887654

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.69  E-value=3.4e-17  Score=158.60  Aligned_cols=121  Identities=17%  Similarity=0.235  Sum_probs=96.8

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC------
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT------  358 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------  358 (419)
                      .+.|...+.||+|+||.||+|.. .+|+.||||++..... ....+.+.+|+++++.++||||+++++++...+      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  103 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT  103 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence            35677889999999999999997 4799999999954322 222457899999999999999999999998763      


Q ss_pred             ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 ~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..++||||+ +++|.++++..        .+++..+..++.||++||+|||+.   +|+||
T Consensus       104 ~~~lv~e~~-~~~L~~~~~~~--------~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~  152 (367)
T 1cm8_A          104 DFYLVMPFM-GTDLGKLMKHE--------KLGEDRIQFLVYQMLKGLRYIHAA---GIIHR  152 (367)
T ss_dssp             CCEEEEECC-SEEHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             eEEEEEecC-CCCHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            459999999 78999998753        477888999999999999999999   99998

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.69  E-value=1e-17  Score=158.62  Aligned_cols=128  Identities=21%  Similarity=0.377  Sum_probs=108.4

Q ss_pred             HHHHHHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc
Q 014778          281 RELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE  359 (419)
Q Consensus       281 ~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  359 (419)
                      +++....++|...+.||+|+||.||+|...+  .||+|.++.... ....+.|.+|+.++.+++||||+++++++...+.
T Consensus        26 ~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  103 (319)
T 2y4i_B           26 QEWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPH  103 (319)
T ss_dssp             GGSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSC
T ss_pred             ccccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCc
Confidence            3344456778888999999999999999753  499999964322 2233468899999999999999999999999999


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++|+||+++|+|.+++.....      .+++.++..++.||+.||+|||+.   +|+||
T Consensus       104 ~~iv~e~~~~~~L~~~l~~~~~------~~~~~~~~~i~~qi~~al~~lH~~---~i~H~  154 (319)
T 2y4i_B          104 LAIITSLCKGRTLYSVVRDAKI------VLDVNKTRQIAQEIVKGMGYLHAK---GILHK  154 (319)
T ss_dssp             EEEECBCCCSEEHHHHTTSSCC------CCCSHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             eEEEeecccCCcHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHhC---Ccccc
Confidence            9999999999999999986532      578889999999999999999999   99997

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.69  E-value=5.2e-17  Score=157.01  Aligned_cols=121  Identities=17%  Similarity=0.264  Sum_probs=104.0

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecC-----Cce
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP-----TER  360 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~~  360 (419)
                      .+.|...+.||+|+||.||+|... +++.||||++.........+.+.+|++++.+++||||+++++++...     ...
T Consensus        26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  105 (364)
T 3qyz_A           26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV  105 (364)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence            456888899999999999999964 68899999996443333346799999999999999999999999765     357


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+||++ |+|.++++..        .+++.++..++.|++.||+|||+.   +|+||
T Consensus       106 ~iv~e~~~-~~L~~~l~~~--------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~  152 (364)
T 3qyz_A          106 YIVQDLME-TDLYKLLKTQ--------HLSNDHICYFLYQILRGLKYIHSA---NVLHR  152 (364)
T ss_dssp             EEEEECCS-EEHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EEEEcccC-cCHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            99999998 5999998754        478889999999999999999999   99997

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.68  E-value=1.4e-16  Score=139.95  Aligned_cols=124  Identities=26%  Similarity=0.375  Sum_probs=111.2

Q ss_pred             CCCcceeEeCCC----------CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccc
Q 014778           57 PCTWFHVTCNSE----------NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYL  126 (419)
Q Consensus        57 ~c~w~~v~c~~~----------~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~  126 (419)
                      .|.|..+.|+..          ..++.|+|++|+|+ .+|..|..+++|++|+|++|.|++..|..|..+++|++|+|++
T Consensus         9 ~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A            9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            356888888732          36899999999998 6789999999999999999999987778899999999999999


Q ss_pred             cccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCC
Q 014778          127 NNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDI  181 (419)
Q Consensus       127 N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~  181 (419)
                      |++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++.-
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCC
Confidence            9999888888999999999999999999666667999999999999999998754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.68  E-value=2.9e-16  Score=146.40  Aligned_cols=135  Identities=24%  Similarity=0.219  Sum_probs=120.2

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccc-cCCCCCcccCCCCCCCEEE
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN-LNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..++.|+|++|.+++..+..|..+++|++|+|++|.+++..|..+..+++|++|++++|. ++...|..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            468999999999998888889999999999999999998889999999999999999997 7765588899999999999


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCCC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~~  203 (419)
                      |++|++++..|..+.++++|++|++++|++++..+. ...+.+++.+++++|.+...
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  168 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence            999999988888899999999999999999987665 56778899999999987643

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.68  E-value=1.1e-16  Score=150.89  Aligned_cols=125  Identities=22%  Similarity=0.336  Sum_probs=101.4

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc----ccCHHHHHHHHHHHhcCC---CCCCcceeEEEecC
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT----QGGELQFQTEVEMISMAV---HRNLLRLRGFCMTP  357 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~----~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~~  357 (419)
                      ..+.|...+.||+|+||+||+|+. .+|+.||||+++....    ......+.+|+.++.+++   ||||+++++++...
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            356888899999999999999996 5789999999863321    122356778888777664   99999999999876


Q ss_pred             C-----ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 T-----ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~-----~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .     ..++||||++ |+|.+++.....     ..+++.++..++.||+.||+|||+.   +|+||
T Consensus        87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~-----~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~  144 (308)
T 3g33_A           87 RTDREIKVTLVFEHVD-QDLRTYLDKAPP-----PGLPAETIKDLMRQFLRGLDFLHAN---CIVHR  144 (308)
T ss_dssp             CSSSEEEEEEEEECCC-CBHHHHHHTCCT-----TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             CCCCceeEEEEehhhh-cCHHHHHhhccC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            5     4789999998 599999987542     1488999999999999999999999   99997

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.68  E-value=9.4e-17  Score=156.56  Aligned_cols=121  Identities=20%  Similarity=0.309  Sum_probs=95.2

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCC-CCCCcceeEEEecCC--cee
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAV-HRNLLRLRGFCMTPT--ERL  361 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~--~~~  361 (419)
                      .++|...+.||+|+||.||+|.. .+|+.||||++.... .....+.+.+|+.++..+. ||||+++++++..++  ..+
T Consensus         8 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~   87 (388)
T 3oz6_A            8 LRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVY   87 (388)
T ss_dssp             HTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEE
T ss_pred             cCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEE
Confidence            46788889999999999999996 478999999985332 1223456889999999997 999999999998654  679


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|||||+ |+|.++++..        .+++..+..++.|++.||+|||+.   +|+||
T Consensus        88 lv~e~~~-~~L~~~~~~~--------~~~~~~~~~i~~qi~~~L~~LH~~---~ivHr  133 (388)
T 3oz6_A           88 LVFDYME-TDLHAVIRAN--------ILEPVHKQYVVYQLIKVIKYLHSG---GLLHR  133 (388)
T ss_dssp             EEEECCS-EEHHHHHHHT--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EEecccC-cCHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHHHhC---CEEeC
Confidence            9999998 6999998753        477888889999999999999999   99998

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.68  E-value=1e-16  Score=150.49  Aligned_cols=118  Identities=17%  Similarity=0.153  Sum_probs=100.2

Q ss_pred             hCCCCC-CeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHH-hcCCCCCCcceeEEEec----CCce
Q 014778          288 DNFSNR-NILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMI-SMAVHRNLLRLRGFCMT----PTER  360 (419)
Q Consensus       288 ~~~~~~-~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l-~~l~H~niv~l~g~~~~----~~~~  360 (419)
                      ++|... +.||+|+||.||++.. .+++.||||+++.      ...+.+|++++ ...+||||+++++++..    ....
T Consensus        17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~------~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~   90 (299)
T 3m2w_A           17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL   90 (299)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc------cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceE
Confidence            345554 7799999999999997 4789999999843      24678899887 66799999999999876    5678


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++|+|.+++.....     ..+++.++..++.|++.||+|||+.   +|+||
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~  141 (299)
T 3m2w_A           91 LIVMECLDGGELFSRIQDRGD-----QAFTEREASEIMKSIGEAIQYLHSI---NIAHR  141 (299)
T ss_dssp             EEEECCCCSCBHHHHHHHCTT-----CCCBHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EEEEeecCCCcHHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            999999999999999986431     1588899999999999999999999   99997

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.68  E-value=5.8e-17  Score=151.25  Aligned_cols=122  Identities=26%  Similarity=0.339  Sum_probs=96.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC--CCC--EEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCcee
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT--DGS--LVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~--~g~--~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  361 (419)
                      ++|...+.||+|+||.||+|++.  +++  .||||+++....  ....+.|.+|++++.+++||||+++++++..++ .+
T Consensus        18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~   96 (291)
T 1u46_A           18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MK   96 (291)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CE
T ss_pred             hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ce
Confidence            46778899999999999999863  333  689999864322  223567999999999999999999999998765 88


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|+||+++|+|.+++.....      .+++.++..++.|+++||+|||+.   +|+||
T Consensus        97 ~v~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~  145 (291)
T 1u46_A           97 MVTELAPLGSLLDRLRKHQG------HFLLGTLSRYAVQVAEGMGYLESK---RFIHR  145 (291)
T ss_dssp             EEEECCTTCBHHHHHHHHGG------GSCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             eeEecccCCCHHHHHHhccC------CcCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            99999999999999976431      578889999999999999999999   99997

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.68  E-value=3.1e-16  Score=146.80  Aligned_cols=134  Identities=28%  Similarity=0.300  Sum_probs=117.8

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..+++.|+|++|.+++..+  .+.+++|++|+|++|.++ .+|..+..+++|++|++++|++++..|..|.++++|+.|+
T Consensus        54 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~  130 (290)
T 1p9a_G           54 YTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY  130 (290)
T ss_dssp             CTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence            4679999999999997543  288999999999999998 7999999999999999999999977678899999999999


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCCCC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNNPP  204 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~~~  204 (419)
                      |++|++++..|..|..+++|+.|++++|++++.++. ...+.+++.+++++|++..-+
T Consensus       131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip  188 (290)
T 1p9a_G          131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP  188 (290)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC
Confidence            999999977777789999999999999999976654 356888999999999987543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.68  E-value=3.8e-16  Score=144.55  Aligned_cols=136  Identities=25%  Similarity=0.297  Sum_probs=119.2

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|+|++|.++...+..|.++++|++|+|++|.+++..+..+..+++|++|++++|++++..|..+.++++|+.|+|
T Consensus        61 ~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  140 (270)
T 2o6q_A           61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL  140 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEEC
Confidence            57899999999999766666789999999999999999766667899999999999999999877778899999999999


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNNPP  204 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~~~  204 (419)
                      ++|++++..+..+..+++|+.|++++|++++..+. ...+..++.+++++|.+...+
T Consensus       141 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence            99999976666789999999999999999987764 566788999999999887544

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.67  E-value=4.4e-17  Score=157.55  Aligned_cols=123  Identities=11%  Similarity=0.127  Sum_probs=98.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCC------CCEEEEEEccccccc----------cCHHHHHHHHHHHhcCCCCCCcce
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTD------GSLVAVKRLKEERTQ----------GGELQFQTEVEMISMAVHRNLLRL  350 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~------g~~vAvK~l~~~~~~----------~~~~~f~~E~~~l~~l~H~niv~l  350 (419)
                      .++|...+.||+|+||.||+|...+      ++.||||.+......          .....+..|+..+..++||||+++
T Consensus        34 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~  113 (364)
T 3op5_A           34 AAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPKY  113 (364)
T ss_dssp             CCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCCE
T ss_pred             CCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCeE
Confidence            4578888999999999999999754      478999998533210          011234556677888999999999


Q ss_pred             eEEEecC----CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          351 RGFCMTP----TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       351 ~g~~~~~----~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++++...    ...++||||+ +|+|.+++.....      .+++.++..++.||+.||+|||+.   +|+||
T Consensus       114 ~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~------~l~~~~~~~i~~qi~~~l~~lH~~---~iiHr  176 (364)
T 3op5_A          114 WGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAK------RFSRKTVLQLSLRILDILEYIHEH---EYVHG  176 (364)
T ss_dssp             EEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CeEEe
Confidence            9999775    3479999999 9999999976421      588999999999999999999999   99998

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.67  E-value=1.1e-16  Score=149.84  Aligned_cols=119  Identities=15%  Similarity=0.171  Sum_probs=104.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      ++|...+.||+|+||.||+|.. .+|+.||||.+....   ..+.+.+|+..+..+ +|+|++++++++......++|||
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e   86 (298)
T 1csn_A           10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS---DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID   86 (298)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT---TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC---ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence            4677889999999999999996 578999999985332   233688999999999 89999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+ +|+|.++++....      .+++.++..++.||+.||+|||+.   +|+||
T Consensus        87 ~~-~~~L~~~l~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~  130 (298)
T 1csn_A           87 LL-GPSLEDLLDLCGR------KFSVKTVAMAAKQMLARVQSIHEK---SLVYR  130 (298)
T ss_dssp             CC-CCBHHHHHHHTTT------CCCHHHHHHHHHHHHHHHHHHHTT---TEECC
T ss_pred             ec-CCCHHHHHHHhcc------CCCHHHHHHHHHHHHHHHHHHHhC---CEecC
Confidence            99 9999999985431      488899999999999999999999   99997

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.67  E-value=5.3e-17  Score=155.79  Aligned_cols=121  Identities=13%  Similarity=0.079  Sum_probs=96.8

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC----CCCEEEEEEccccccc----------cCHHHHHHHHHHHhcCCCCCCcceeEE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT----DGSLVAVKRLKEERTQ----------GGELQFQTEVEMISMAVHRNLLRLRGF  353 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~~----------~~~~~f~~E~~~l~~l~H~niv~l~g~  353 (419)
                      ++|...+.||+|+||.||+|...    ++..||||++......          .....+.+|+..+..++||||++++++
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~  116 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS  116 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence            46777899999999999999975    5778999998533211          122357788899999999999999999


Q ss_pred             Eec----CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          354 CMT----PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       354 ~~~----~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +..    ....++||||+ +|+|.+++....       .+++.++..++.||+.||+|||+.   +|+||
T Consensus       117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~  175 (345)
T 2v62_A          117 GLTEFKGRSYRFMVMERL-GIDLQKISGQNG-------TFKKSTVLQLGIRMLDVLEYIHEN---EYVHG  175 (345)
T ss_dssp             EEEESSSCEEEEEEEECE-EEEHHHHCBGGG-------BCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             cccccCCCcEEEEEEecc-CCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CeeCC
Confidence            988    67789999999 999999998654       588999999999999999999999   99997

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.67  E-value=1.2e-16  Score=159.52  Aligned_cols=120  Identities=14%  Similarity=0.164  Sum_probs=100.2

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC------
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT------  358 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------  358 (419)
                      .+.|...+.||+|+||+||+|.. .+|+.||||++.... .....+.+.+|+.+++.++|||||++++++...+      
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            45688889999999999999996 468999999996432 2223467899999999999999999999997653      


Q ss_pred             ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          359 ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       359 ~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..++||||+++ +|.+.+..         .+++.++..++.||+.||+|||+.   +|+||
T Consensus       141 ~~~lv~E~~~~-~l~~~~~~---------~l~~~~~~~~~~qil~aL~~lH~~---~iiHr  188 (464)
T 3ttj_A          141 DVYLVMELMDA-NLCQVIQM---------ELDHERMSYLLYQMLCGIKHLHSA---GIIHR  188 (464)
T ss_dssp             EEEEEEECCSE-EHHHHHTS---------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             eEEEEEeCCCC-CHHHHHhh---------cCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            46999999986 57666653         367788889999999999999999   99998

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.67  E-value=2.3e-16  Score=148.62  Aligned_cols=138  Identities=21%  Similarity=0.293  Sum_probs=122.9

Q ss_pred             CCCEEEEEcCCCCccccch-hhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCC-CCCcccCCCCCCCE
Q 014778           68 ENSVTRVDLGNANLSGQLV-SQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNG-PIPTTLGKLSKLRF  145 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~-~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~~  145 (419)
                      ..+++.|+|++|.+++..+ ..+..+++|++|+|++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|+.
T Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  179 (306)
T 2z66_A          100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF  179 (306)
T ss_dssp             CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred             CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE
Confidence            4678999999999998665 679999999999999999998889999999999999999999987 58889999999999


Q ss_pred             EEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCC-CCCCccccccccccCCCCCCCCC
Q 014778          146 LRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP-TNGSFSLFTPISFANNQLNNPPP  205 (419)
Q Consensus       146 l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p-~~~~~~~~~~~~~~~n~~~~~~~  205 (419)
                      |+|++|++++..|..+..+++|+.|++++|++++..+ ....+..++.+++++|.+.+..+
T Consensus       180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred             EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence            9999999998889999999999999999999998766 35667889999999998876543

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.66  E-value=1.2e-16  Score=149.01  Aligned_cols=127  Identities=15%  Similarity=0.155  Sum_probs=100.2

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHH-HHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQ-FQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~-f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      .++|...+.||+|+||.||+|.. .+|+.||||+++.........+ +..+...++.++||||+++++++...+..++||
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~   85 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM   85 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence            45788889999999999999996 5789999999965433222333 444555688899999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||++ |+|.++++....   ....+++..+..++.|++.||+|||+.  ++|+||
T Consensus        86 e~~~-~~l~~~l~~~~~---~~~~~~~~~~~~i~~qi~~~l~~lH~~--~~i~H~  134 (290)
T 3fme_A           86 ELMD-TSLDKFYKQVID---KGQTIPEDILGKIAVSIVKALEHLHSK--LSVIHR  134 (290)
T ss_dssp             ECCS-EEHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHHHHHHHHH--SCCCCC
T ss_pred             ehhc-cchHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHHhhc--CCeecC
Confidence            9998 588888764211   112588999999999999999999974  279997

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.66  E-value=5e-16  Score=160.13  Aligned_cols=143  Identities=20%  Similarity=0.202  Sum_probs=128.4

Q ss_pred             cceeEeCC----------CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEecccccc
Q 014778           60 WFHVTCNS----------ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL  129 (419)
Q Consensus        60 w~~v~c~~----------~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  129 (419)
                      +..+.|..          ...++.|+|++|.+++..|..|+++++|++|+|++|.+++..|..|.++++|++|+|++|++
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   93 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL   93 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence            45677863          24689999999999998899999999999999999999988899999999999999999999


Q ss_pred             CCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCC-CCCCCCCccccccccccCCCCCC
Q 014778          130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTG-DIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       130 ~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g-~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      ++..|..++++++|++|+|++|++++..|..++++++|++|++++|++++ .+|....+.+++.+++++|.+..
T Consensus        94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  167 (606)
T 3t6q_A           94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY  167 (606)
T ss_dssp             SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred             cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence            98889999999999999999999998778889999999999999999998 55766668888888888887763

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.66  E-value=1.7e-16  Score=151.41  Aligned_cols=120  Identities=26%  Similarity=0.331  Sum_probs=96.5

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHH--HhcCCCCCCcceeEEEec-----CCc
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEM--ISMAVHRNLLRLRGFCMT-----PTE  359 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~--l~~l~H~niv~l~g~~~~-----~~~  359 (419)
                      .++|...+.||+|+||.||+|+. +++.||||++...    ....+..|.++  +..++||||+++++++..     ...
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~   86 (336)
T 3g2f_A           12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA----NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRME   86 (336)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEE
T ss_pred             hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc----chhhHHHHHHHHHHHhccCcchhhheecccccccCCCce
Confidence            45778889999999999999987 5889999998533    23345555555  456899999999986643     224


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhcc------ccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSC------VSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~------~p~IiHR  419 (419)
                      .++||||+++|+|.++++...        .++.++..++.||++||+|||+.+      +++|+||
T Consensus        87 ~~lv~e~~~~g~L~~~l~~~~--------~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~  144 (336)
T 3g2f_A           87 YLLVMEYYPNGSLXKYLSLHT--------SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHR  144 (336)
T ss_dssp             EEEEECCCTTCBHHHHHHHCC--------BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECS
T ss_pred             EEEEEecCCCCcHHHHHhhcc--------cchhHHHHHHHHHHHHHHHHHhhhccccccccceeec
Confidence            689999999999999997653        477888999999999999999773      4589997

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.66  E-value=1.3e-16  Score=157.95  Aligned_cols=120  Identities=15%  Similarity=0.088  Sum_probs=94.2

Q ss_pred             CCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEEeccCCCC
Q 014778          292 NRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLVYPFMVNG  370 (419)
Q Consensus       292 ~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~e~~~~G  370 (419)
                      ..++||+|+||+||.+...+|+.||||++...    ..+.+.+|+.++.++ +|||||++++++.+.+..++||||++ |
T Consensus        19 ~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~----~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~-g   93 (434)
T 2rio_A           19 SEKILGYGSSGTVVFQGSFQGRPVAVKRMLID----FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN-L   93 (434)
T ss_dssp             EEEEEEECSTTCEEEEEESSSSEEEEEEEEGG----GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-E
T ss_pred             ccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH----HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-C
Confidence            35789999999998766667999999998543    234678999999875 89999999999999999999999996 6


Q ss_pred             ChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          371 SVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       371 sL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|.+++.............++.++..++.||+.||+|||+.   +|+||
T Consensus        94 sL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHr  139 (434)
T 2rio_A           94 NLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHR  139 (434)
T ss_dssp             EHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             CHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            99999987643222111234456678999999999999999   99998

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.66  E-value=1.1e-16  Score=154.90  Aligned_cols=120  Identities=16%  Similarity=0.239  Sum_probs=94.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecC------Cc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP------TE  359 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~~  359 (419)
                      +.|...+.||+|+||.||+|.. .+|+.||||++.... .....+.+.+|+++++.++||||+++++++...      ..
T Consensus        29 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~~  108 (367)
T 2fst_X           29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFND  108 (367)
T ss_dssp             TTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred             CceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCCe
Confidence            5788889999999999999996 478999999995432 122345788999999999999999999999764      55


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++|+||+ +++|.++++..        .+++..+..++.||++||+|||+.   +|+||
T Consensus       109 ~~lv~e~~-~~~L~~~~~~~--------~l~~~~~~~i~~qi~~aL~~LH~~---givH~  156 (367)
T 2fst_X          109 VYLVTHLM-GADLNNIVKCQ--------KLTDDHVQFLIYQILRGLKYIHSA---DIIHR  156 (367)
T ss_dssp             CEEEEECC-CEECC-----C--------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             EEEEeccc-CCCHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CeeeC
Confidence            79999999 68999988753        488889999999999999999999   99998

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.66  E-value=4.9e-16  Score=155.54  Aligned_cols=143  Identities=21%  Similarity=0.263  Sum_probs=122.3

Q ss_pred             cceeEeCCC----------CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEecccccc
Q 014778           60 WFHVTCNSE----------NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL  129 (419)
Q Consensus        60 w~~v~c~~~----------~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  129 (419)
                      |..|.|...          ..++.|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++
T Consensus        13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   92 (477)
T 2id5_A           13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL   92 (477)
T ss_dssp             TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence            778888732          3688999999999998889999999999999999999988899999999999999999999


Q ss_pred             CCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCC-CCCCccccccccccCCCCCC
Q 014778          130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP-TNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       130 ~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p-~~~~~~~~~~~~~~~n~~~~  202 (419)
                      ++..+..+.++++|++|+|++|++++..|..+.++++|+.|++++|++++..| ....+.+++.+++++|.+..
T Consensus        93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  166 (477)
T 2id5_A           93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS  166 (477)
T ss_dssp             CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS
T ss_pred             CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc
Confidence            85545567899999999999999998888889999999999999999987766 34566777778887776653

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.66  E-value=1.2e-16  Score=151.02  Aligned_cols=124  Identities=15%  Similarity=0.175  Sum_probs=106.6

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCC--CCCCcceeEEEecCCcee
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAV--HRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~~~~~  361 (419)
                      ...+.|...+.||+|+||.||++...+++.||||.+.... .....+.+.+|++++.+++  |+||+++++++...+..+
T Consensus        25 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~  104 (313)
T 3cek_A           25 VKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIY  104 (313)
T ss_dssp             ETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEE
T ss_pred             eccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEE
Confidence            3456788889999999999999998889999999985432 2223467899999999997  599999999999999999


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||| +.+|+|.+++....       .+++.++..++.|+++||+|||+.   +|+||
T Consensus       105 lv~e-~~~~~L~~~l~~~~-------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~  151 (313)
T 3cek_A          105 MVME-CGNIDLNSWLKKKK-------SIDPWERKSYWKNMLEAVHTIHQH---GIVHS  151 (313)
T ss_dssp             EEEC-CCSEEHHHHHHHCS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             EEEe-cCCCcHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Cceec
Confidence            9999 66789999998654       578888999999999999999999   99997

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.66  E-value=2.3e-16  Score=152.95  Aligned_cols=119  Identities=13%  Similarity=0.161  Sum_probs=101.0

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC------c
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT------E  359 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------~  359 (419)
                      ++|...+.||+|+||.||+|... +++.||||++..... ....+.+.+|+.+++.++||||+++++++...+      .
T Consensus        25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~  104 (371)
T 2xrw_A           25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQD  104 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCCE
T ss_pred             hheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeeccccccccccc
Confidence            56888899999999999999964 689999999954321 222457889999999999999999999998765      6


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++||||+++ +|.+++..         .+++..+..++.||+.||+|||+.   +|+||
T Consensus       105 ~~lv~e~~~~-~l~~~~~~---------~~~~~~~~~i~~qi~~al~~lH~~---~ivH~  151 (371)
T 2xrw_A          105 VYIVMELMDA-NLCQVIQM---------ELDHERMSYLLYQMLCGIKHLHSA---GIIHR  151 (371)
T ss_dssp             EEEEEECCSE-EHHHHHHS---------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             eEEEEEcCCC-CHHHHHhh---------ccCHHHHHHHHHHHHHHHHHHHHC---Ceecc
Confidence            7999999985 78888863         367788889999999999999999   99997

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.66  E-value=1.7e-17  Score=172.10  Aligned_cols=133  Identities=23%  Similarity=0.389  Sum_probs=114.6

Q ss_pred             CCCEEEEEcCCCCcccc-----------------chhhhh--CCCCCCEEEcccCcccccCCccccCCCcCcEEeccccc
Q 014778           68 ENSVTRVDLGNANLSGQ-----------------LVSQLG--QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN  128 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~-----------------~~~~~~--~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~  128 (419)
                      ..+++.|+|++|.++|.                 +|..++  ++++|++|+|++|.+.|.+|+.|+++++|++|++++|+
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            45789999999999996                 999999  99999999999999999999999999999999999998


Q ss_pred             -cCC-CCCcccCCC------CCCCEEEcccCcCcccCCc--cCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCC
Q 014778          129 -LNG-PIPTTLGKL------SKLRFLRLNNNSLMGEIPR--SLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANN  198 (419)
Q Consensus       129 -l~g-~~p~~~~~l------~~L~~l~l~~N~l~g~~p~--~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n  198 (419)
                       ++| .+|..++++      ++|+.|+|++|+++ .+|.  .++++++|+.|++++|+++|.+|....+.+++.+++++|
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N  363 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN  363 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC
Confidence             998 899888876      88999999999998 8888  888999999999999999988885555556666666666


Q ss_pred             CCC
Q 014778          199 QLN  201 (419)
Q Consensus       199 ~~~  201 (419)
                      .+.
T Consensus       364 ~l~  366 (636)
T 4eco_A          364 QIT  366 (636)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            544

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.66  E-value=3.5e-17  Score=154.52  Aligned_cols=126  Identities=18%  Similarity=0.245  Sum_probs=98.0

Q ss_pred             HHHhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccc-----cCHHHHHHHHHHHhcC----CCCCCcceeEE
Q 014778          284 QVATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQ-----GGELQFQTEVEMISMA----VHRNLLRLRGF  353 (419)
Q Consensus       284 ~~~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~-----~~~~~f~~E~~~l~~l----~H~niv~l~g~  353 (419)
                      ..-.++|...+.||+|+||.||+|.. .+++.||||+++.....     .....+.+|+.++.++    +|+||++++++
T Consensus        27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~  106 (312)
T 2iwi_A           27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDW  106 (312)
T ss_dssp             ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEE
T ss_pred             hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEE
Confidence            33456788899999999999999996 47899999999643221     1123466788888888    89999999999


Q ss_pred             EecCCceeEEecc-CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          354 CMTPTERLLVYPF-MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       354 ~~~~~~~~lv~e~-~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +...+..++|+|| +++|+|.+++....       .+++.++..++.||++||+|||+.   +|+||
T Consensus       107 ~~~~~~~~~v~e~~~~~~~L~~~l~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~  163 (312)
T 2iwi_A          107 FETQEGFMLVLERPLPAQDLFDYITEKG-------PLGEGPSRCFFGQVVAAIQHCHSR---GVVHR  163 (312)
T ss_dssp             C-----CEEEEECCSSEEEHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHH---TEECC
T ss_pred             EecCCeEEEEEEecCCCCCHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            9999999999999 89999999998643       578889999999999999999999   99997

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=8.9e-17  Score=168.88  Aligned_cols=172  Identities=19%  Similarity=0.168  Sum_probs=78.4

Q ss_pred             ChHHHHHHHHHHHhcCCC-CCCCCCCCCCCCCCCCcceeEeCCCCCEEE------------------EEcCCCCccc---
Q 014778           26 SNAEGDALNALKTNLADP-NNVLQSWDATLVNPCTWFHVTCNSENSVTR------------------VDLGNANLSG---   83 (419)
Q Consensus        26 ~~~~~~~l~~~~~~~~~~-~~~l~~w~~~~~~~c~w~~v~c~~~~~~~~------------------l~L~~~~l~g---   83 (419)
                      ...+.++|+++..+...+ ...-..|.......+.|.++.++. ++++.                  ++|+.|.|.+   
T Consensus       130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~  208 (727)
T 4b8c_D          130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST-PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDD  208 (727)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred             cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC-CccceEEeeCCCCCcchhhHhhcCccCcccccCccc
Confidence            345667888888766322 122335654444445676655542 22222                  2333333322   


Q ss_pred             ------cchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccC
Q 014778           84 ------QLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEI  157 (419)
Q Consensus        84 ------~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~  157 (419)
                            ..+..+..+..|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|+++++|++|+|++|.|+ .+
T Consensus       209 ~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l  285 (727)
T 4b8c_D          209 IENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SL  285 (727)
T ss_dssp             -------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SC
T ss_pred             cccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-cc
Confidence                  12444556666666666666665 56666666666666666666666 66666666666666666666666 56


Q ss_pred             CccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCC
Q 014778          158 PRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       158 p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~  201 (419)
                      |..|+++++|++|+|++|.|+..++..+.+.+++.+++++|.+.
T Consensus       286 p~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          286 PAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred             ChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence            66666666666666666666532223455556666666666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.66  E-value=1e-15  Score=143.21  Aligned_cols=134  Identities=27%  Similarity=0.282  Sum_probs=120.6

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      ..++.|+|++|.+++..+..|..+++|++|+|++|.+++ +|.. ..+++|++|++++|+++ .+|..+..+++|+.|+|
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l  107 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence            468999999999999889999999999999999999995 4543 88999999999999998 89999999999999999


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNNPPP  205 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~~~~  205 (419)
                      ++|++++..|..|..+++|+.|++++|++++.++. ...+.+++.+++++|++...+.
T Consensus       108 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  165 (290)
T 1p9a_G          108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA  165 (290)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred             CCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence            99999987778899999999999999999987665 3567889999999999876443

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.66  E-value=4e-17  Score=167.81  Aligned_cols=125  Identities=17%  Similarity=0.223  Sum_probs=105.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEec------CCce
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT------PTER  360 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~------~~~~  360 (419)
                      +.|...+.||+|+||.||+|.. .+|+.||||+++........+.|.+|++++.+++||||+++++++..      .+..
T Consensus        14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~   93 (676)
T 3qa8_A           14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP   93 (676)
T ss_dssp             ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSC
T ss_pred             CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeE
Confidence            6788999999999999999996 46899999998654333345679999999999999999999999766      5677


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++|+|.+++.....    ...+++..+..++.|++.||+|||+.   +|+||
T Consensus        94 ~LVmEy~~ggsL~~~L~~~~~----~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHr  145 (676)
T 3qa8_A           94 LLAMEYCEGGDLRKYLNQFEN----CCGLKEGPIRTLLSDISSALRYLHEN---RIIHR  145 (676)
T ss_dssp             CCEEECCSSCBHHHHHHSSSC----TTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCC
T ss_pred             EEEEEeCCCCCHHHHHHhccc----CCCCCHHHHHHHHHHHHHHHHHHHHC---CCccC
Confidence            999999999999999987532    12477888899999999999999999   99997

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.66  E-value=2.5e-16  Score=151.56  Aligned_cols=147  Identities=24%  Similarity=0.319  Sum_probs=124.6

Q ss_pred             CCCCCcceeEeCC------------CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEE
Q 014778           55 VNPCTWFHVTCNS------------ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSL  122 (419)
Q Consensus        55 ~~~c~w~~v~c~~------------~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L  122 (419)
                      ..+|.|.++ |+.            ..+++.|+|++|++++..+..+.++++|++|+|++|.+++..|..|..+++|++|
T Consensus        27 ~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           27 SLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            467889887 542            1368999999999998777799999999999999999998888889999999999


Q ss_pred             eccccccCCCCCcccCCCCCCCEEEcccCcCcccCCc--cCcCCCCCcEEEcccCc-CCCCCC-CCCCccccccccccCC
Q 014778          123 DLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPR--SLTNVNSLQVLDLSNNK-LTGDIP-TNGSFSLFTPISFANN  198 (419)
Q Consensus       123 ~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~--~l~~l~~L~~l~l~~N~-l~g~~p-~~~~~~~~~~~~~~~n  198 (419)
                      ++++|++++..+..++++++|++|+|++|+++ .+|.  .+.++++|+.|++++|+ +++..| ....++.++.+++++|
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            99999999544444899999999999999998 4555  78999999999999995 555444 3567788999999999


Q ss_pred             CCCCC
Q 014778          199 QLNNP  203 (419)
Q Consensus       199 ~~~~~  203 (419)
                      .+...
T Consensus       185 ~l~~~  189 (353)
T 2z80_A          185 DLQSY  189 (353)
T ss_dssp             TCCEE
T ss_pred             CcCcc
Confidence            87654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.66  E-value=6.1e-16  Score=144.21  Aligned_cols=136  Identities=19%  Similarity=0.209  Sum_probs=118.0

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCc-ccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNN-ISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFL  146 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~-l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l  146 (419)
                      ..+++.|+|++|.+++..|..|..+++|++|+|++|. +++..|..+..+++|++|++++|++++..|..+.++++|+.|
T Consensus        55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  134 (285)
T 1ozn_A           55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL  134 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence            3578999999999998888899999999999999997 776668889999999999999999998778889999999999


Q ss_pred             EcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCCC
Q 014778          147 RLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       147 ~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~~  203 (419)
                      +|++|++++..+..+..+++|+.|++++|++++..+. ...+..++.+++++|.+...
T Consensus       135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  192 (285)
T 1ozn_A          135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (285)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence            9999999877677789999999999999999876664 56678888999999887654

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.65  E-value=1.5e-16  Score=151.03  Aligned_cols=125  Identities=23%  Similarity=0.348  Sum_probs=101.6

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEe--CCCCEEEEEEccccccc-cCHHHHHHHHHHHhcC---CCCCCcceeEEEe----
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRL--TDGSLVAVKRLKEERTQ-GGELQFQTEVEMISMA---VHRNLLRLRGFCM----  355 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~--~~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l---~H~niv~l~g~~~----  355 (419)
                      ..++|...+.||+|+||.||+|..  .+|+.||||+++..... .....+.+|+.++..+   +||||+++++++.    
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~   88 (326)
T 1blx_A            9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   88 (326)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence            456788889999999999999997  46889999999643321 2233577788777655   8999999999997    


Q ss_pred             -cCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          356 -TPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       356 -~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                       .....++||||++ |+|.+++.....     ..+++.++..++.||+.||+|||+.   +|+||
T Consensus        89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~  144 (326)
T 1blx_A           89 DRETKLTLVFEHVD-QDLTTYLDKVPE-----PGVPTETIKDMMFQLLRGLDFLHSH---RVVHR  144 (326)
T ss_dssp             SSEEEEEEEEECCS-CBHHHHHHHSCT-----TCSCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             CCCceEEEEEecCC-CCHHHHHHhccc-----CCCCHHHHHHHHHHHHHHHHHHHHC---Cceec
Confidence             4566899999998 699999976431     1478889999999999999999999   99997

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.65  E-value=9.1e-16  Score=152.67  Aligned_cols=141  Identities=23%  Similarity=0.240  Sum_probs=106.4

Q ss_pred             cceeEeCCC----------CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEecccccc
Q 014778           60 WFHVTCNSE----------NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL  129 (419)
Q Consensus        60 w~~v~c~~~----------~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  129 (419)
                      |..|.|...          ..++.|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l  135 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL  135 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence            678888732          3689999999999999899999999999999999999988889999999999999999999


Q ss_pred             CCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC--CCCccccccccccCCCC
Q 014778          130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT--NGSFSLFTPISFANNQL  200 (419)
Q Consensus       130 ~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~--~~~~~~~~~~~~~~n~~  200 (419)
                      ++..+..+.++++|+.|+|++|++++..+..|.++++|+.|++++|+..+.+|.  ...+.+++.+++++|.+
T Consensus       136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI  208 (452)
T ss_dssp             SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence            966666688999999999999999855554555555555555555433333332  22333444444444433

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.65  E-value=2.3e-16  Score=151.74  Aligned_cols=119  Identities=18%  Similarity=0.240  Sum_probs=100.8

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc-cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc------
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE------  359 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~------  359 (419)
                      ++|...+.||+|+||.||+|... +|+.||||++...... ...+.+.+|+.+++.++||||+++++++...+.      
T Consensus        24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  103 (353)
T 3coi_A           24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD  103 (353)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred             ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccccee
Confidence            46777899999999999999974 6899999999643221 224578999999999999999999999988654      


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++||||++ |+|.+++..         .+++.++..++.||+.||+|||+.   +|+||
T Consensus       104 ~~lv~e~~~-~~l~~~~~~---------~~~~~~~~~i~~qi~~al~~LH~~---~ivH~  150 (353)
T 3coi_A          104 FYLVMPFMQ-TDLQKIMGL---------KFSEEKIQYLVYQMLKGLKYIHSA---GVVHR  150 (353)
T ss_dssp             CEEEEECCS-EEGGGTTTS---------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEEEecccc-CCHHHHhcC---------CCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            499999998 688887743         377888999999999999999999   99997

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.65  E-value=2.5e-16  Score=152.69  Aligned_cols=119  Identities=18%  Similarity=0.244  Sum_probs=101.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccc-cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCce-----
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTER-----  360 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~-----  360 (419)
                      +.|...+.||+|+||.||+|... +|+.||||++...... ...+.+.+|+.+++.++||||+++++++...+..     
T Consensus        42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~  121 (371)
T 4exu_A           42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD  121 (371)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCCC
T ss_pred             ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCccccee
Confidence            56777899999999999999964 6899999999643221 2246789999999999999999999999887654     


Q ss_pred             -eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 -LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 -~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                       ++||||++ |+|.+++..         .+++.++..++.||+.||+|||+.   +|+||
T Consensus       122 ~~lv~e~~~-~~l~~~~~~---------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~  168 (371)
T 4exu_A          122 FYLVMPFMQ-TDLQKIMGM---------EFSEEKIQYLVYQMLKGLKYIHSA---GVVHR  168 (371)
T ss_dssp             CEEEEECCC-EEHHHHTTS---------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEEEEcccc-ccHHHHhhc---------CCCHHHHHHHHHHHHHHHHHHHHC---CCcCC
Confidence             99999998 689888743         378889999999999999999999   99997

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.65  E-value=4.9e-16  Score=160.10  Aligned_cols=133  Identities=17%  Similarity=0.180  Sum_probs=99.1

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN  149 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~  149 (419)
                      .++.+++++|.++...+..+..+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+|+
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence            45677788877776655667778888888888888887666778888888888888888877666677788888888888


Q ss_pred             cCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCC
Q 014778          150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       150 ~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~  202 (419)
                      +|.+++..|..|+++++|++|++++|.+++.+|. ...+++++.+++++|.+..
T Consensus       132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            8888754444567788888888888888777663 5566777777777776653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.65  E-value=3.9e-16  Score=138.59  Aligned_cols=132  Identities=27%  Similarity=0.263  Sum_probs=113.1

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..+++.|+|++|++++..+..|..+++|++|+|++|.+++..+..+..+++|++|++++|++++..+..+.++++|+.|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  130 (208)
T 2o6s_A           51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR  130 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEE
Confidence            35799999999999987777789999999999999999966666689999999999999999976666789999999999


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCCCCC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPP  205 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~~~  205 (419)
                      |++|++++..+..+..+++|+.|++++|++.+..|      .++.+++..|.+.+..+
T Consensus       131 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~------~l~~L~~~~n~~~g~ip  182 (208)
T 2o6s_A          131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP------GIRYLSEWINKHSGVVR  182 (208)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT------TTHHHHHHHHHCTTTBB
T ss_pred             CCCCccceeCHHHhccCCCccEEEecCCCeecCCC------CHHHHHHHHHhCCceee
Confidence            99999997777778999999999999999998765      34566666676665443

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.65  E-value=4.3e-17  Score=156.85  Aligned_cols=117  Identities=17%  Similarity=0.178  Sum_probs=99.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC---------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcc---------
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT---------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLR---------  349 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~---------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~---------  349 (419)
                      ++|...+.||+|+||.||+|+..         +++.||||.+...      +.+.+|++++.+++||||++         
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~------~~~~~E~~~l~~l~h~niv~~~~~~~~~~  115 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD------GRLFNEQNFFQRAAKPLQVNKWKKLYSTP  115 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT------STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc------chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence            56788899999999999999975         3789999998532      36889999999999999987         


Q ss_pred             ------eeEEEec-CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          350 ------LRGFCMT-PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       350 ------l~g~~~~-~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                            +++++.. .+..++||||+ +|+|.+++.....     ..+++.++..++.||+.||+|||+.   +|+||
T Consensus       116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~-----~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~  183 (352)
T 2jii_A          116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPK-----HVLSERSVLQVACRLLDALEFLHEN---EYVHG  183 (352)
T ss_dssp             TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGG-----GCCCHHHHHHHHHHHHHHHHHHHHT---TCBCS
T ss_pred             ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCc-----CCCCHHHHHHHHHHHHHHHHHHHhC---CccCC
Confidence                  6778776 67789999999 9999999986521     1588999999999999999999999   99997

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.65  E-value=2.8e-16  Score=168.33  Aligned_cols=143  Identities=28%  Similarity=0.290  Sum_probs=110.3

Q ss_pred             CCcceeEeCCCCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccC-CccccCCCcCcEEeccccccCCCCCcc
Q 014778           58 CTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKV-PEELGNLTNLVSLDLYLNNLNGPIPTT  136 (419)
Q Consensus        58 c~w~~v~c~~~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~-p~~~~~l~~L~~L~ls~N~l~g~~p~~  136 (419)
                      |.|..|.+ -..+++.|||++|.+++..|..|.++++|++|+|++|.+.+.+ |..|.++++|++|+|++|++++..|..
T Consensus        14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~   92 (844)
T 3j0a_A           14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA   92 (844)
T ss_dssp             CCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred             CCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence            45666666 4567888888888888887888888888888888888666666 667888888888888888888777888


Q ss_pred             cCCCCCCCEEEcccCcCcccCCcc--CcCCCCCcEEEcccCcCCCCCCC--CCCccccccccccCCCCC
Q 014778          137 LGKLSKLRFLRLNNNSLMGEIPRS--LTNVNSLQVLDLSNNKLTGDIPT--NGSFSLFTPISFANNQLN  201 (419)
Q Consensus       137 ~~~l~~L~~l~l~~N~l~g~~p~~--l~~l~~L~~l~l~~N~l~g~~p~--~~~~~~~~~~~~~~n~~~  201 (419)
                      |+++++|++|+|++|.+++.+|..  +.++++|+.|++++|.+++..|.  ...+++++.+++++|.+.
T Consensus        93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            888888888888888888766655  78888888888888888776542  456667777777777654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.65  E-value=5.6e-16  Score=138.99  Aligned_cols=113  Identities=25%  Similarity=0.311  Sum_probs=104.2

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..+++.|+|++|.+++..|..|.++++|++|+|++|.|++..+..|..+++|++|+|++|++++..|..+.++++|+.|+
T Consensus        55 l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  134 (220)
T 2v9t_B           55 YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS  134 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence            35799999999999999999999999999999999999954445578999999999999999988899999999999999


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGD  180 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~  180 (419)
                      |++|++++..+..+..+++|+.|++++|+++..
T Consensus       135 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B          135 LYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            999999988888899999999999999999864

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.65  E-value=2.5e-16  Score=154.43  Aligned_cols=120  Identities=16%  Similarity=0.287  Sum_probs=91.6

Q ss_pred             CCeeCcCCceEEEEEEeC---CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEec--CCceeEEeccC
Q 014778          293 RNILGRGGFGKVYKGRLT---DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT--PTERLLVYPFM  367 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~lv~e~~  367 (419)
                      .++||+|+||.||+|...   +++.||||++...   .....+.+|+.+|++++|||||++++++..  ....++||||+
T Consensus        26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~---~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~  102 (405)
T 3rgf_A           26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT---GISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYA  102 (405)
T ss_dssp             SCCCC-----EEEEEEESSSSCCCCEEEEECSSS---SCCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECC
T ss_pred             CcEeeecCCeEEEEEEEccCCCCeEEEEEEECCC---CCCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCC
Confidence            458999999999999965   5789999999643   224578999999999999999999999954  66789999999


Q ss_pred             CCCChhhhhcCCccc--cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIV--SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~--~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      + |+|.+++......  ......+++..+..++.||+.||+|||+.   +|+||
T Consensus       103 ~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~  152 (405)
T 3rgf_A          103 E-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHR  152 (405)
T ss_dssp             S-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             C-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCC
Confidence            7 4888888643211  11222488889999999999999999999   99998

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=1.4e-15  Score=131.50  Aligned_cols=129  Identities=22%  Similarity=0.241  Sum_probs=110.6

Q ss_pred             EEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEccc
Q 014778           71 VTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNN  150 (419)
Q Consensus        71 ~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~  150 (419)
                      .+.+++++++++. +|..+  .++|++|+|++|.+++..+..+..+++|++|++++|++++..+..+.++++|+.|+|++
T Consensus         9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            4689999999985 55444  36999999999999976666789999999999999999966666679999999999999


Q ss_pred             CcCcccCCccCcCCCCCcEEEcccCcCCCCCCCC-CCccccccccccCCCCCC
Q 014778          151 NSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN-GSFSLFTPISFANNQLNN  202 (419)
Q Consensus       151 N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~-~~~~~~~~~~~~~n~~~~  202 (419)
                      |++++..+..+..+++|+.|++++|++++.++.. ..+.+++.+++++|++.+
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            9999877777899999999999999999776653 567889999999997754

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.64  E-value=2.5e-16  Score=149.99  Aligned_cols=124  Identities=19%  Similarity=0.232  Sum_probs=101.2

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCC-CCCCcceeEEEec--------
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-HRNLLRLRGFCMT--------  356 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~--------  356 (419)
                      ...|...+.||+|+||.||+|... +++.||||++... .....+.+.+|+.++.++. ||||+++++++..        
T Consensus        27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~  105 (337)
T 3ll6_A           27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSN-EEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTG  105 (337)
T ss_dssp             TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEES-SHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTS
T ss_pred             CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCC-chHHHHHHHHHHHHHHHhccCCChhhccccccccccccccC
Confidence            346778899999999999999964 7899999998433 2223457899999999996 9999999999942        


Q ss_pred             CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccc--eecC
Q 014778          357 PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSI--LLFC  419 (419)
Q Consensus       357 ~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~--IiHR  419 (419)
                      ....++|+||++ |+|.+++.....    ...+++.++..++.||+.||+|||+.   +  |+||
T Consensus       106 ~~~~~lv~e~~~-g~L~~~l~~~~~----~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~  162 (337)
T 3ll6_A          106 QAEFLLLTELCK-GQLVEFLKKMES----RGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHR  162 (337)
T ss_dssp             SEEEEEEEECCS-EEHHHHHHHHHT----TCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCC
T ss_pred             CceEEEEEEecC-CCHHHHHHHhhc----cCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEc
Confidence            334789999996 799999875221    11588899999999999999999987   6  9997

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.64  E-value=3.3e-16  Score=137.92  Aligned_cols=128  Identities=18%  Similarity=0.264  Sum_probs=64.8

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN  149 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~  149 (419)
                      +++.|++++|+++ .+| .+..+++|++|++++|.++  .++.+..+++|++|++++|++++..|..++.+++|++|+|+
T Consensus        45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            3455555555555 233 3555555555555555443  22345555555555555555554455555555555555555


Q ss_pred             cCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCC
Q 014778          150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       150 ~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~  201 (419)
                      +|++++..|..+..+++|+.|++++|++.+.+|....+..++.+++++|.+.
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~  172 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVH  172 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCC
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCc
Confidence            5555554455555555555555555553333344444444555555555443

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.64  E-value=5.8e-16  Score=148.01  Aligned_cols=119  Identities=17%  Similarity=0.157  Sum_probs=96.1

Q ss_pred             hhCCCCC-CeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHH-HHHhcCCCCCCcceeEEEec----CCc
Q 014778          287 TDNFSNR-NILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEV-EMISMAVHRNLLRLRGFCMT----PTE  359 (419)
Q Consensus       287 ~~~~~~~-~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~-~~l~~l~H~niv~l~g~~~~----~~~  359 (419)
                      .++|... ++||+|+||.||+|... +|+.||||++...     . ...+|+ ..+..++||||+++++++..    ...
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-----~-~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~  100 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-----P-KARQEVDHHWQASGGPHIVCILDVYENMHHGKRC  100 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS-----H-HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc-----H-HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCce
Confidence            3466663 57999999999999975 7999999998532     1 223333 34667899999999999876    344


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++||||+++|+|.+++.....     ..+++.++..++.|++.||+|||+.   +|+||
T Consensus       101 ~~lv~e~~~gg~L~~~l~~~~~-----~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~  152 (336)
T 3fhr_A          101 LLIIMECMEGGELFSRIQERGD-----QAFTEREAAEIMRDIGTAIQFLHSH---NIAHR  152 (336)
T ss_dssp             EEEEEECCTTEEHHHHHHTC-C-----CCCBHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEEEEeccCCCCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            7999999999999999986532     2588999999999999999999999   99997

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.64  E-value=8.3e-16  Score=132.14  Aligned_cols=109  Identities=31%  Similarity=0.332  Sum_probs=96.2

Q ss_pred             EEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccC
Q 014778           72 TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN  151 (419)
Q Consensus        72 ~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N  151 (419)
                      +.+++++|+++. +|..+.  ++|++|+|++|.|++..|..|..+++|++|+|++|++++..|..+.++++|++|+|++|
T Consensus        12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            467888888885 666663  79999999999999888999999999999999999999666666799999999999999


Q ss_pred             cCcccCCccCcCCCCCcEEEcccCcCCCCCCC
Q 014778          152 SLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT  183 (419)
Q Consensus       152 ~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~  183 (419)
                      ++++..|..|..+++|+.|++++|++++..+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~  120 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACSD  120 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence            99977777899999999999999999987664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.63  E-value=6.9e-16  Score=145.31  Aligned_cols=136  Identities=24%  Similarity=0.298  Sum_probs=120.8

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCC-ccccCCCcCcEEeccccccCCCCCcccCCCCCCCEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVP-EELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFL  146 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l  146 (419)
                      ..+++.|+|++|.+++ +|..+..+++|++|+|++|.+++..+ ..+..+++|++|++++|.+++..|..+.++++|+.|
T Consensus        77 ~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  155 (306)
T 2z66_A           77 TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  155 (306)
T ss_dssp             CSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred             ccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence            3578999999999985 67789999999999999999996544 579999999999999999998899999999999999


Q ss_pred             EcccCcCcc-cCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCCCC
Q 014778          147 RLNNNSLMG-EIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNNPP  204 (419)
Q Consensus       147 ~l~~N~l~g-~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~~~  204 (419)
                      +|++|.+++ .+|..+..+++|+.|++++|++++..|. ...+..++.+++++|.+...+
T Consensus       156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  215 (306)
T 2z66_A          156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD  215 (306)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence            999999987 6899999999999999999999988774 566788999999999887543

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.63  E-value=2e-16  Score=156.41  Aligned_cols=119  Identities=18%  Similarity=0.155  Sum_probs=97.8

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      ...|...++||+|+||+||.....+|+.||||++.....    ..+.+|++++..+ +|||||++++++.+....++|||
T Consensus        23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~----~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E   98 (432)
T 3p23_A           23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF----SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIE   98 (432)
T ss_dssp             TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE----EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH----HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEE
Confidence            345777899999999996655555799999999954322    2357899999998 89999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |++ |+|.+++.....      ...+.++..++.||++||+|||+.   +|+||
T Consensus        99 ~~~-g~L~~~l~~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivHr  142 (432)
T 3p23_A           99 LCA-ATLQEYVEQKDF------AHLGLEPITLLQQTTSGLAHLHSL---NIVHR  142 (432)
T ss_dssp             CCS-EEHHHHHHSSSC------CCCSSCHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             CCC-CCHHHHHHhcCC------CccchhHHHHHHHHHHHHHHHHHC---cCEeC
Confidence            997 699999986542      233345667899999999999999   99998

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.63  E-value=6.6e-16  Score=146.81  Aligned_cols=128  Identities=13%  Similarity=0.249  Sum_probs=101.4

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHH-HHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVE-MISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~-~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      .++|...+.||+|+||.||+|... +|+.||||+++.........++..|+. +++.++||||+++++++..++..++||
T Consensus        21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~  100 (327)
T 3aln_A           21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM  100 (327)
T ss_dssp             SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence            356778899999999999999974 789999999965433333446666766 778899999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++ +|.+++.....  .....+++..+..++.|++.||.|||+.  ++|+||
T Consensus       101 e~~~~-~l~~~~~~~~~--~~~~~~~~~~~~~i~~~i~~~l~~lH~~--~~ivH~  150 (327)
T 3aln_A          101 ELMST-SFDKFYKYVYS--VLDDVIPEEILGKITLATVKALNHLKEN--LKIIHR  150 (327)
T ss_dssp             CCCSE-EHHHHHHHHHH--TTCCCCCHHHHHHHHHHHHHHHHHHHHH--HSCCCS
T ss_pred             eecCC-ChHHHHHHHHh--hhcccCcHHHHHHHHHHHHHHHHHHhcc--CCEeEC
Confidence            99985 88887763211  0112578888999999999999999975  379997

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.63  E-value=3.5e-16  Score=154.19  Aligned_cols=119  Identities=22%  Similarity=0.391  Sum_probs=95.1

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecC----C--cee
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP----T--ERL  361 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~----~--~~~  361 (419)
                      .|...+.||+|+||.||+|+.. +|+.||||++....     +.+.+|+++|+.++|||||++++++...    +  ..+
T Consensus        55 ~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~-----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~  129 (420)
T 1j1b_A           55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK-----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN  129 (420)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT-----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred             eEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc-----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence            4677789999999999999975 69999999985432     1234799999999999999999998542    1  257


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++ ++.+.+.....   ....+++..+..++.||++||+|||+.   +|+||
T Consensus       130 lv~e~~~~-~l~~~~~~~~~---~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHr  180 (420)
T 1j1b_A          130 LVLDYVPE-TVYRVARHYSR---AKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHR  180 (420)
T ss_dssp             EEEECCCE-EHHHHHHHHHH---TTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECS
T ss_pred             eehhcccc-cHHHHHHHHhh---ccCCCCHHHHHHHHHHHHHHHHHHHHC---Ccccc
Confidence            99999986 67666653211   112588888999999999999999999   99998

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.63  E-value=1.9e-15  Score=149.77  Aligned_cols=141  Identities=25%  Similarity=0.272  Sum_probs=100.6

Q ss_pred             cceeEeCC----------CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEecccccc
Q 014778           60 WFHVTCNS----------ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL  129 (419)
Q Consensus        60 w~~v~c~~----------~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  129 (419)
                      |..|.|..          ...++.|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l  124 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL  124 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence            66888873          13578899999999988888899999999999999999877777888899999999999998


Q ss_pred             CCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC--CCCccccccccccCCCC
Q 014778          130 NGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT--NGSFSLFTPISFANNQL  200 (419)
Q Consensus       130 ~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~--~~~~~~~~~~~~~~n~~  200 (419)
                      ++..+..+..+++|+.|+|++|++++..+..|.++++|+.|++++|+..+.+|.  ...+.+++.+++++|.+
T Consensus       125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l  197 (440)
T 3zyj_A          125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL  197 (440)
T ss_dssp             SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred             CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence            855555688888888888888888755555566666666666555443333332  23333444444444433

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.63  E-value=2e-16  Score=150.06  Aligned_cols=124  Identities=18%  Similarity=0.277  Sum_probs=105.3

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccc-----cCHHHHHHHHHHHhcCC--CCCCcceeEEEecC
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQ-----GGELQFQTEVEMISMAV--HRNLLRLRGFCMTP  357 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~-----~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~  357 (419)
                      ..+.|...+.||+|+||.||+|.. .+++.||||.++.....     ...+.+.+|+.++.+++  |+||+++++++..+
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~  120 (320)
T 3a99_A           41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP  120 (320)
T ss_dssp             CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred             ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence            345688889999999999999996 47899999999643221     12245788999999986  59999999999999


Q ss_pred             CceeEEeccCCC-CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 TERLLVYPFMVN-GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~~~~lv~e~~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +..++|+||+.+ |+|.+++....       .+++..+..++.||+.||+|||+.   +|+||
T Consensus       121 ~~~~lv~e~~~~~~~L~~~l~~~~-------~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~  173 (320)
T 3a99_A          121 DSFVLILERPEPVQDLFDFITERG-------ALQEELARSFFWQVLEAVRHCHNC---GVLHR  173 (320)
T ss_dssp             SEEEEEEECCSSEEEHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             CcEEEEEEcCCCCccHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHHHHC---CcEeC
Confidence            999999999986 89999997643       578888999999999999999999   99997

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.63  E-value=4.6e-16  Score=158.77  Aligned_cols=111  Identities=27%  Similarity=0.327  Sum_probs=103.2

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN  149 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~  149 (419)
                      .++.|+|++|.|++ +|. |+.+++|+.|+|++|.|+ .+|..|+.+++|+.|+|++|++++ +| .++++++|+.|+|+
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            47889999999998 666 999999999999999999 899999999999999999999996 78 89999999999999


Q ss_pred             cCcCcccC-CccCcCCCCCcEEEcccCcCCCCCCCCC
Q 014778          150 NNSLMGEI-PRSLTNVNSLQVLDLSNNKLTGDIPTNG  185 (419)
Q Consensus       150 ~N~l~g~~-p~~l~~l~~L~~l~l~~N~l~g~~p~~~  185 (419)
                      +|++++.. |..++.+++|+.|++++|++++.+|...
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~  553 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE  553 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHH
Confidence            99999877 9999999999999999999999887543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.63  E-value=1.8e-15  Score=136.54  Aligned_cols=138  Identities=26%  Similarity=0.246  Sum_probs=116.9

Q ss_pred             cceeEeCCCCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCC
Q 014778           60 WFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGK  139 (419)
Q Consensus        60 w~~v~c~~~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~  139 (419)
                      |..-.|+    .+.++.++++++ .+|..+.  ++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..+.+
T Consensus        14 ~~~~~Cs----~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~   86 (229)
T 3e6j_A           14 PSQCSCS----GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS   86 (229)
T ss_dssp             CTTCEEE----TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCEEe----CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc
Confidence            5555675    357999999987 4666554  79999999999999988999999999999999999998544456799


Q ss_pred             CCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCCCC
Q 014778          140 LSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPP  204 (419)
Q Consensus       140 l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~~  204 (419)
                      +++|+.|+|++|++++..+..|..+++|+.|++++|+++..++....+.+++.+++++|.+...+
T Consensus        87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~  151 (229)
T 3e6j_A           87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP  151 (229)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred             CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccC
Confidence            99999999999999977777789999999999999999954345567788999999999987544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.63  E-value=5.9e-16  Score=136.32  Aligned_cols=129  Identities=17%  Similarity=0.294  Sum_probs=113.5

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|++++|.++  .++.+..+++|++|+|++|.+++..|..+..+++|++|++++|++++..|..++.+++|+.|+|
T Consensus        66 ~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A           66 HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEc
Confidence            57999999999765  3468999999999999999999889999999999999999999999889999999999999999


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~  201 (419)
                      ++|.+.+.+| .+..+++|+.|++++|++++ ++....+.+++.+++++|++.
T Consensus       144 ~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          144 SYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC---
T ss_pred             cCCCCccccH-hhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCcccC
Confidence            9998445677 69999999999999999997 446667788999999999864

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.63  E-value=9.7e-16  Score=147.54  Aligned_cols=130  Identities=18%  Similarity=0.278  Sum_probs=92.2

Q ss_pred             HHHHHHhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc
Q 014778          281 RELQVATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE  359 (419)
Q Consensus       281 ~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~  359 (419)
                      .......++|...+.||+|+||.||+|... +|+.||||++....  .....+.+|++.++.++||||+++++++...+.
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~   93 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP--RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGE   93 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT--TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECS
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc--cccHHHHHHHHHHHhcCCCCcccHHHhhhcccc
Confidence            445667789999999999999999999974 68999999985432  223467788888999999999999999976433


Q ss_pred             -------eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhh--hccccceecC
Q 014778          360 -------RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAK--YSCVSILLFC  419 (419)
Q Consensus       360 -------~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH--~~~~p~IiHR  419 (419)
                             .++||||+++ +|.+.+....   .....+++..+..++.|++.||+|||  +.   +|+||
T Consensus        94 ~~~~~~~~~lv~e~~~~-~l~~~~~~~~---~~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~  155 (360)
T 3e3p_A           94 RDRRDIYLNVVMEYVPD-TLHRCCRNYY---RRQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHR  155 (360)
T ss_dssp             SCTTCEEEEEEEECCSC-BHHHHHHHHH---TTTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCS
T ss_pred             ccccceeEEEEeecccc-cHHHHHHHHh---hcccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecC
Confidence                   7899999996 5554443211   01115777888899999999999999  77   99997

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.63  E-value=8.2e-16  Score=143.76  Aligned_cols=120  Identities=16%  Similarity=0.231  Sum_probs=101.2

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEE-ecCCceeEEe
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC-MTPTERLLVY  364 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~-~~~~~~~lv~  364 (419)
                      .++|...+.||+|+||.||+|+. .+|+.||||++....   ..+++.+|+.++..++|++++..++++ ...+..++||
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT---KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM   84 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS---SCCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc---chhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEE
Confidence            35688889999999999999996 579999999985432   234689999999999999888777666 4566779999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+ +|+|.+++.....      .+++.++..++.|++.||+|||+.   +|+||
T Consensus        85 e~~-~~~L~~~~~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~  129 (296)
T 3uzp_A           85 ELL-GPSLEDLFNFCSR------KFSLKTVLLLADQMISRIEYIHSK---NFIHR  129 (296)
T ss_dssp             ECC-CCBHHHHHHHTTT------CCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             Eec-CCCHHHHHHhhcc------CCCHHHHHHHHHHHHHHHHHHHhC---CeeeC
Confidence            999 8999999974321      588899999999999999999999   99997

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=1.2e-16  Score=169.86  Aligned_cols=132  Identities=23%  Similarity=0.356  Sum_probs=111.8

Q ss_pred             CCCEEEEEcCCCCccc-----------------cchhhhh--CCCCCCEEEcccCcccccCCccccCCCcCcEEeccccc
Q 014778           68 ENSVTRVDLGNANLSG-----------------QLVSQLG--QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN  128 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g-----------------~~~~~~~--~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~  128 (419)
                      ..+++.|+|++|.|+|                 .+|+.++  ++++|++|+|++|.+.|.+|..|+++++|+.|+|++|+
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            3578999999999998                 4888887  99999999999999999999999999999999999998


Q ss_pred             -cCC-CCCcccCCCC-------CCCEEEcccCcCcccCCc--cCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccC
Q 014778          129 -LNG-PIPTTLGKLS-------KLRFLRLNNNSLMGEIPR--SLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFAN  197 (419)
Q Consensus       129 -l~g-~~p~~~~~l~-------~L~~l~l~~N~l~g~~p~--~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~  197 (419)
                       ++| .+|..+++++       +|+.|+|++|+++ .+|.  .++++++|+.|++++|+++ .+|....+.+++.+++++
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDY  604 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCS
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcC
Confidence             888 7887666554       8888888888888 8888  8888888888888888888 777666777777777777


Q ss_pred             CCCC
Q 014778          198 NQLN  201 (419)
Q Consensus       198 n~~~  201 (419)
                      |.+.
T Consensus       605 N~l~  608 (876)
T 4ecn_A          605 NQIE  608 (876)
T ss_dssp             SCCS
T ss_pred             Cccc
Confidence            7765

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.63  E-value=6.3e-16  Score=159.38  Aligned_cols=134  Identities=19%  Similarity=0.235  Sum_probs=115.0

Q ss_pred             CCEEEEEcCCCCccccch-hhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCC-CCcccCCCCCCCEE
Q 014778           69 NSVTRVDLGNANLSGQLV-SQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGP-IPTTLGKLSKLRFL  146 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~-~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~-~p~~~~~l~~L~~l  146 (419)
                      .+++.|+|++|.+++..| ..+..+++|++|++++|.+++..|..+..+++|++|++++|++++. +|..++++++|+.|
T Consensus       399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  478 (606)
T 3vq2_A          399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL  478 (606)
T ss_dssp             TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence            568889999999988877 6788899999999999999888888888999999999999998874 78888889999999


Q ss_pred             EcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCC
Q 014778          147 RLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       147 ~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~  202 (419)
                      +|++|++++..|..+.++++|+.|++++|++++.+|. ...+..++.+++++|.+..
T Consensus       479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  535 (606)
T 3vq2_A          479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET  535 (606)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC
T ss_pred             ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc
Confidence            9999999888888888999999999999999887764 5667788888888888764

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.62  E-value=8e-16  Score=152.06  Aligned_cols=121  Identities=17%  Similarity=0.247  Sum_probs=101.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcC------CCCCCcceeEEEecCCce
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMA------VHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l------~H~niv~l~g~~~~~~~~  360 (419)
                      ..|...+.||+|+||.||+|... +++.||||+++...  ...+++.+|++++..+      +|+||+++++++...+..
T Consensus        97 ~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~  174 (429)
T 3kvw_A           97 YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK--RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI  174 (429)
T ss_dssp             TTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH--HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred             CcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc--chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence            45777899999999999999864 68999999996432  2235677888877765      677999999999999999


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||++ |+|.+++.....     ..+++..+..++.||++||+|||+.   +||||
T Consensus       175 ~lv~e~~~-~~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHr  224 (429)
T 3kvw_A          175 CMTFELLS-MNLYELIKKNKF-----QGFSLPLVRKFAHSILQCLDALHKN---RIIHC  224 (429)
T ss_dssp             EEEECCCC-CBHHHHHHHTTT-----CCCCHHHHHHHHHHHHHHHHHHHHH---TEECS
T ss_pred             EEEEeccC-CCHHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            99999997 699999876532     1478889999999999999999999   99998

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.62  E-value=1.8e-15  Score=158.09  Aligned_cols=134  Identities=23%  Similarity=0.247  Sum_probs=107.2

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|+|++|++++..+..|+++++|++|+|++|.+++..|..+.++++|++|+|++|++++..+..|+++++|++|+|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            46888888888888877778888888888888888888877888888888888888888888433346888888888888


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~  202 (419)
                      ++|++++..|..|+++++|++|++++|++++.+|. ...+++++.+++++|.+..
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  159 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA  159 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence            88888876677888888888888888888887664 4556777777777776653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.62  E-value=1.5e-15  Score=148.07  Aligned_cols=134  Identities=18%  Similarity=0.188  Sum_probs=109.3

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      ..++.|++++|.++...+..+..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..++++++|++|+|
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            45778889988888655556788999999999999998777778889999999999999998777777889999999999


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~  202 (419)
                      ++|+++...+..+.++++|++|++++|++++..|. ...+++++.+++++|.+..
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            99998843333468889999999999999887664 5667788888888887764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.62  E-value=1.2e-15  Score=138.49  Aligned_cols=132  Identities=21%  Similarity=0.255  Sum_probs=114.8

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCc-ccccCCccccCCCcCcEEeccc-cccCCCCCcccCCCCCCCEE
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNN-ISGKVPEELGNLTNLVSLDLYL-NNLNGPIPTTLGKLSKLRFL  146 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~-l~g~~p~~~~~l~~L~~L~ls~-N~l~g~~p~~~~~l~~L~~l  146 (419)
                      ..++.|+|++|++++..+..|..+++|++|+|++|. +++..+..|..+++|++|++++ |++++..|..+.++++|+.|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            468999999999998888899999999999999997 8865556899999999999999 99996656788999999999


Q ss_pred             EcccCcCcccCCccCcCCCCCc---EEEcccC-cCCCCCCC-CCCccccc-cccccCCCCCC
Q 014778          147 RLNNNSLMGEIPRSLTNVNSLQ---VLDLSNN-KLTGDIPT-NGSFSLFT-PISFANNQLNN  202 (419)
Q Consensus       147 ~l~~N~l~g~~p~~l~~l~~L~---~l~l~~N-~l~g~~p~-~~~~~~~~-~~~~~~n~~~~  202 (419)
                      ++++|++++ +|. +..+++|+   .|++++| ++++..+. ...+..++ .+++++|.+..
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~  170 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS  170 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc
Confidence            999999986 776 88888888   9999999 88876654 56678888 99999998763

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.62  E-value=5.8e-16  Score=147.44  Aligned_cols=121  Identities=17%  Similarity=0.183  Sum_probs=102.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe--CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCC------CcceeEEEecCCc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL--TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRN------LLRLRGFCMTPTE  359 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~--~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~n------iv~l~g~~~~~~~  359 (419)
                      +.|...+.||+|+||.||+|..  .+++.||||+++...  ...+.+.+|++++..++|++      ++++++++...+.
T Consensus        14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~   91 (339)
T 1z57_A           14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD--RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH   91 (339)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH--HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred             CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC--chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence            4677789999999999999986  368899999996432  22457889999988876654      9999999999999


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++||||+ +|+|.+++.....     ..+++.++..++.|+++||+|||+.   +|+||
T Consensus        92 ~~lv~e~~-~~~l~~~l~~~~~-----~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~  142 (339)
T 1z57_A           92 ICIVFELL-GLSTYDFIKENGF-----LPFRLDHIRKMAYQICKSVNFLHSN---KLTHT  142 (339)
T ss_dssp             EEEEEECC-CCBHHHHHHHTTT-----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EEEEEcCC-CCCHHHHHHhcCC-----CCCcHHHHHHHHHHHHHHHHHHHHC---CCcCC
Confidence            99999999 8899999976531     1477888999999999999999999   99998

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.62  E-value=1.4e-15  Score=142.16  Aligned_cols=121  Identities=16%  Similarity=0.233  Sum_probs=98.4

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEE-ecCCceeEE
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC-MTPTERLLV  363 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~-~~~~~~~lv  363 (419)
                      ..+.|...+.||+|+||.||+|+. .+++.||||.+.....   ..++.+|++++..++|++++..++++ ...+..++|
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv   83 (296)
T 4hgt_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK---HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMV   83 (296)
T ss_dssp             ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC------CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEE
T ss_pred             cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc---chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEE
Confidence            346788899999999999999996 5789999998743322   23588999999999999888877766 556678999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+ +|+|.+++.....      .+++.++..++.||+.||+|||+.   +|+||
T Consensus        84 ~e~~-~~~L~~~~~~~~~------~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~  129 (296)
T 4hgt_A           84 MELL-GPSLEDLFNFCSR------KFSLKTVLLLADQMISRIEYIHSK---NFIHR  129 (296)
T ss_dssp             EECC-CCBHHHHHHHTTS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEcc-CCCHHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeecC
Confidence            9999 8999999974321      588899999999999999999999   99997

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.62  E-value=3.3e-15  Score=142.42  Aligned_cols=142  Identities=23%  Similarity=0.295  Sum_probs=122.7

Q ss_pred             CCcceeEeCCC----------CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEecccc
Q 014778           58 CTWFHVTCNSE----------NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLN  127 (419)
Q Consensus        58 c~w~~v~c~~~----------~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N  127 (419)
                      |.|..+.|...          ..++.|+|++|++++..|..|.++++|++|+|++|.+++..|..|..+++|++|++++|
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            67999999732          36899999999999888889999999999999999999888999999999999999999


Q ss_pred             ccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCC--CCCC-CCCccccccccccCCCCCCC
Q 014778          128 NLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTG--DIPT-NGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       128 ~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g--~~p~-~~~~~~~~~~~~~~n~~~~~  203 (419)
                      +++ .+|..+.  ++|++|++++|++++..+..+.++++|+.|++++|+++.  ..|. ...+ .++.+++++|.+..-
T Consensus       113 ~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l  187 (332)
T 2ft3_A          113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI  187 (332)
T ss_dssp             CCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred             cCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence            998 7888776  899999999999997666779999999999999999963  4443 2333 778888888887653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.61  E-value=2.1e-15  Score=130.13  Aligned_cols=109  Identities=28%  Similarity=0.289  Sum_probs=95.9

Q ss_pred             EEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccC
Q 014778           72 TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN  151 (419)
Q Consensus        72 ~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N  151 (419)
                      +.+++++|+++ .+|..+.  ++|++|+|++|.|++..|..|..+++|++|+|++|+|++..+..+.++++|+.|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            67899999996 5777665  89999999999999888999999999999999999999654455789999999999999


Q ss_pred             cCcccCCccCcCCCCCcEEEcccCcCCCCCCC
Q 014778          152 SLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT  183 (419)
Q Consensus       152 ~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~  183 (419)
                      ++++..+..|..+++|+.|++++|+++...+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~  123 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD  123 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence            99966666699999999999999999976553

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.61  E-value=1.3e-15  Score=141.37  Aligned_cols=115  Identities=23%  Similarity=0.278  Sum_probs=96.4

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..+..+++|++|++++|++++..+..++++++|++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  130 (276)
T 2z62_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN  130 (276)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred             ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence            35688899999988887777888889999999999998877778888888999999999988876666788888899999


Q ss_pred             cccCcCcc-cCCccCcCCCCCcEEEcccCcCCCCCC
Q 014778          148 LNNNSLMG-EIPRSLTNVNSLQVLDLSNNKLTGDIP  182 (419)
Q Consensus       148 l~~N~l~g-~~p~~l~~l~~L~~l~l~~N~l~g~~p  182 (419)
                      |++|++++ .+|..+.++++|+.|++++|++++..+
T Consensus       131 l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A          131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             CcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            99988876 468888888888888888888877544

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.61  E-value=1.1e-15  Score=149.46  Aligned_cols=120  Identities=19%  Similarity=0.379  Sum_probs=93.8

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc------ee
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE------RL  361 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~------~~  361 (419)
                      ..|...+.||+|+||.||+|+...+..||+|++.....     ...+|+++++.++|||||++++++...+.      .+
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~-----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~  114 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR-----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN  114 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT-----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc-----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence            35777899999999999999987666799998853322     22479999999999999999999965433      78


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||++++ +.+.+....   .....+++..+..++.||++||+|||+.   +|+||
T Consensus       115 lv~e~~~~~-l~~~~~~~~---~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHr  165 (394)
T 4e7w_A          115 LVLEYVPET-VYRASRHYA---KLKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHR  165 (394)
T ss_dssp             EEEECCSEE-HHHHHHHHH---HTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEeeccCcc-HHHHHHHHH---hhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCC
Confidence            999999975 443333211   0111578888999999999999999999   99998

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.61  E-value=2.3e-15  Score=155.48  Aligned_cols=134  Identities=24%  Similarity=0.336  Sum_probs=106.4

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcc-cccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNI-SGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l-~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..++.++++.|.+.+..+..+..++.|+.|+|++|.+ .+.+|..|..+++|+.|||++|++++..|..|+++++|+.|+
T Consensus       445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~  524 (635)
T 4g8a_A          445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  524 (635)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence            3567788888888888888888888888888888864 445777888888888888888888877788888888888888


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCC-CCc-cccccccccCCCCCC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN-GSF-SLFTPISFANNQLNN  202 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~-~~~-~~~~~~~~~~n~~~~  202 (419)
                      |++|++++..|..|..+++|++||+++|++++.+|.. ..+ ++++.+++++|++.|
T Consensus       525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            8888888777778888888888888888888877753 333 567788888887765

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.60  E-value=8.5e-16  Score=148.87  Aligned_cols=121  Identities=12%  Similarity=-0.011  Sum_probs=83.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc--ccCHHHHHHHH---HHHhcCCCCCCccee-------EEE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT--QGGELQFQTEV---EMISMAVHRNLLRLR-------GFC  354 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~~f~~E~---~~l~~l~H~niv~l~-------g~~  354 (419)
                      ..|...+.||+|+||.||+|... +|+.||||++.....  ....+.+.+|+   ..|+. +||||++++       +++
T Consensus        62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~~  140 (371)
T 3q60_A           62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDAV  140 (371)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEEE
T ss_pred             eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehhe
Confidence            35777899999999999999964 789999999965332  12244677784   55666 799988754       444


Q ss_pred             ecC-----------------CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHH------HHHHHHHHHHHHHhhhc
Q 014778          355 MTP-----------------TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFF------IAFVQSLIQSLHFAKYS  411 (419)
Q Consensus       355 ~~~-----------------~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~------~~i~~qia~gl~yLH~~  411 (419)
                      ..+                 ...++||||++ |+|.++++....      .+.+..+      ..++.||++||+|||+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~------~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~  213 (371)
T 3q60_A          141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDF------VYVFRGDEGILALHILTAQLIRLAANLQSK  213 (371)
T ss_dssp             EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHH------SCCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhcc------ccchhhhhhhhhHHHHHHHHHHHHHHHHHC
Confidence            332                 23799999999 899999986432      1223333      67789999999999999


Q ss_pred             cccceecC
Q 014778          412 CVSILLFC  419 (419)
Q Consensus       412 ~~p~IiHR  419 (419)
                         +||||
T Consensus       214 ---~ivHr  218 (371)
T 3q60_A          214 ---GLVHG  218 (371)
T ss_dssp             ---TEEET
T ss_pred             ---CCccC
Confidence               99998

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.60  E-value=1.6e-15  Score=143.36  Aligned_cols=123  Identities=15%  Similarity=0.231  Sum_probs=91.0

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHH-HHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQ-FQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~-f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      .++|...+.||+|+||.||+|... +|+.||||++..........+ +..+..++..++||||+++++++...+..++||
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~  103 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM  103 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence            456777899999999999999975 789999999964432222233 444555788899999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhh-ccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKY-SCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~-~~~p~IiHR  419 (419)
                      ||+ ++.+..+.....      ..+++..+..++.|+++||+|||+ .   +|+||
T Consensus       104 e~~-~~~~~~l~~~~~------~~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~  149 (318)
T 2dyl_A          104 ELM-GTCAEKLKKRMQ------GPIPERILGKMTVAIVKALYYLKEKH---GVIHR  149 (318)
T ss_dssp             CCC-SEEHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCC
T ss_pred             ecc-CCcHHHHHHHhc------cCCCHHHHHHHHHHHHHHHHHHHhhC---CEEeC
Confidence            999 445554443221      157888899999999999999997 4   79997

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.60  E-value=1e-15  Score=147.86  Aligned_cols=134  Identities=24%  Similarity=0.250  Sum_probs=112.7

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..+++.|+|++|+|++..+..|.++++|++|+|++|.|++..+..|..+++|+.|+|++|++++..|..|.++++|+.|+
T Consensus        63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~  142 (361)
T 2xot_A           63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLY  142 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEE
Confidence            45799999999999998888999999999999999999977777899999999999999999988889999999999999


Q ss_pred             cccCcCcccCCcc-C---cCCCCCcEEEcccCcCCCCCCC-CCCccc--cccccccCCCCCC
Q 014778          148 LNNNSLMGEIPRS-L---TNVNSLQVLDLSNNKLTGDIPT-NGSFSL--FTPISFANNQLNN  202 (419)
Q Consensus       148 l~~N~l~g~~p~~-l---~~l~~L~~l~l~~N~l~g~~p~-~~~~~~--~~~~~~~~n~~~~  202 (419)
                      |++|++++ +|.. +   ..+++|+.|++++|+|++..+. ...+..  +..+++.+|++.+
T Consensus       143 L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          143 LSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             CCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            99999995 5544 4   6799999999999999965432 222232  3567888888764

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.60  E-value=3.3e-15  Score=149.45  Aligned_cols=119  Identities=18%  Similarity=0.244  Sum_probs=99.8

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCC-CCCcceeEEEecCCceeEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVH-RNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H-~niv~l~g~~~~~~~~~lv~e  365 (419)
                      +.|...+.||+|+||.||+|+. .+++.||||++.....   ..++.+|++++..++| +++..+..++...+..++|||
T Consensus         7 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~---~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme   83 (483)
T 3sv0_A            7 NKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK---HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD   83 (483)
T ss_dssp             TTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS---SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             CcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc---cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence            5688889999999999999996 5799999998753322   2358899999999987 455566667777888899999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+ +|+|.+++.....      .+++.+++.++.||+.||+|||+.   +||||
T Consensus        84 ~~-g~sL~~ll~~~~~------~l~~~~~~~i~~qi~~aL~yLH~~---gIvHr  127 (483)
T 3sv0_A           84 LL-GPSLEDLFNFCSR------KLSLKTVLMLADQMINRVEFVHSK---SFLHR  127 (483)
T ss_dssp             CC-CCBHHHHHHHTTT------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             CC-CCCHHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CEeec
Confidence            99 8999999974321      588999999999999999999999   99998

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.59  E-value=3.1e-15  Score=152.82  Aligned_cols=137  Identities=25%  Similarity=0.316  Sum_probs=111.5

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCC-ccccCCCcCcEEeccccccCCCCCcccCCCCCCCEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVP-EELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFL  146 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l  146 (419)
                      ..+++.|+|++|.+++..+. +..+++|++|++++|.+++..| ..+..+++|++|++++|.+++..|..+.++++|+.|
T Consensus       372 ~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  450 (570)
T 2z63_A          372 TTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  450 (570)
T ss_dssp             CSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred             cCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence            35688899999988875444 8888889999999888887666 467888888888888888888888888888888888


Q ss_pred             EcccCcCc-ccCCccCcCCCCCcEEEcccCcCCCCCC-CCCCccccccccccCCCCCCCCC
Q 014778          147 RLNNNSLM-GEIPRSLTNVNSLQVLDLSNNKLTGDIP-TNGSFSLFTPISFANNQLNNPPP  205 (419)
Q Consensus       147 ~l~~N~l~-g~~p~~l~~l~~L~~l~l~~N~l~g~~p-~~~~~~~~~~~~~~~n~~~~~~~  205 (419)
                      +|++|.++ +.+|..+..+++|+.|++++|++++.+| ....+++++.+++++|.+.+.++
T Consensus       451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  511 (570)
T 2z63_A          451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD  511 (570)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence            88888887 5788888888888888888888888766 34667788888888888776543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.59  E-value=4.1e-15  Score=141.62  Aligned_cols=144  Identities=23%  Similarity=0.319  Sum_probs=122.6

Q ss_pred             CCCcceeEeCC----------CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccc
Q 014778           57 PCTWFHVTCNS----------ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYL  126 (419)
Q Consensus        57 ~c~w~~v~c~~----------~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~  126 (419)
                      .|.|..+.|..          ...++.|+|++|++++..+..|+++++|++|+|++|.+++..|..|..+++|++|++++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~  109 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK  109 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence            35799999973          23688999999999998888999999999999999999988899999999999999999


Q ss_pred             cccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCC--CCC-CCCCccccccccccCCCCCCC
Q 014778          127 NNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTG--DIP-TNGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       127 N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g--~~p-~~~~~~~~~~~~~~~n~~~~~  203 (419)
                      |+++ .+|..+.  ++|+.|++++|++++..+..+.++++|+.|++++|+++.  ..| ....+..++.+++++|.+..-
T Consensus       110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l  186 (330)
T 1xku_A          110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  186 (330)
T ss_dssp             SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence            9998 7888765  789999999999997777778999999999999999863  333 245567788888888887643

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.59  E-value=1.1e-15  Score=148.94  Aligned_cols=122  Identities=14%  Similarity=0.182  Sum_probs=99.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCC--------CCCCcceeEEEe---
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV--------HRNLLRLRGFCM---  355 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~--------H~niv~l~g~~~---  355 (419)
                      +.|...+.||+|+||+||+|+. .+++.||||+++..  ....+.+.+|++++..++        |+||+++++++.   
T Consensus        37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~  114 (397)
T 1wak_A           37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA--EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG  114 (397)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC--HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred             CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC--CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence            5688889999999999999996 46889999999643  123457889999999886        788999999987   


Q ss_pred             -cCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          356 -TPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       356 -~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                       .....++||||+ +|+|.+++.....     ..+++..+..++.||++||+|||+++  +|+||
T Consensus       115 ~~~~~~~lv~e~~-~~~l~~~~~~~~~-----~~~~~~~~~~i~~qi~~aL~~lH~~~--givHr  171 (397)
T 1wak_A          115 VNGTHICMVFEVL-GHHLLKWIIKSNY-----QGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHT  171 (397)
T ss_dssp             TTEEEEEEEECCC-CCBHHHHHHHTTT-----SCCCHHHHHHHHHHHHHHHHHHHHTT--CEECC
T ss_pred             CCCceEEEEEecc-CccHHHHHHhccc-----CCCCHHHHHHHHHHHHHHHHHHHHhC--CEecC
Confidence             456789999999 5567666654321     15888899999999999999999853  79998

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.59  E-value=7.6e-16  Score=145.64  Aligned_cols=133  Identities=20%  Similarity=0.252  Sum_probs=72.1

Q ss_pred             CCEEEEEcCCCCccccchhhh--hCCCCCCEEEcccCcccccCCccccCC-----CcCcEEeccccccCCCCCcccCCCC
Q 014778           69 NSVTRVDLGNANLSGQLVSQL--GQLTNLQYLELYSNNISGKVPEELGNL-----TNLVSLDLYLNNLNGPIPTTLGKLS  141 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~--~~l~~L~~L~L~~N~l~g~~p~~~~~l-----~~L~~L~ls~N~l~g~~p~~~~~l~  141 (419)
                      .+++.|+|++|.++|.+|..+  +.+++|++|+|++|.+++. |..++.+     ++|++|+|++|++++..|..+++++
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~  173 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP  173 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred             CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence            345666666666666555554  5566666666666666644 5555555     5666666666666555555566666


Q ss_pred             CCCEEEcccCcCccc--CCccC--cCCCCCcEEEcccCcCCCC--CCC--CCCccccccccccCCCCCC
Q 014778          142 KLRFLRLNNNSLMGE--IPRSL--TNVNSLQVLDLSNNKLTGD--IPT--NGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       142 ~L~~l~l~~N~l~g~--~p~~l--~~l~~L~~l~l~~N~l~g~--~p~--~~~~~~~~~~~~~~n~~~~  202 (419)
                      +|++|+|++|++.|.  +|..+  ..+++|+.|++++|++++.  ++.  ...++.++.+++++|.+..
T Consensus       174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  242 (312)
T 1wwl_A          174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD  242 (312)
T ss_dssp             SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCS
T ss_pred             CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCc
Confidence            666666666665543  22233  5555555555555555521  111  0123445555555555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.59  E-value=2.1e-15  Score=142.61  Aligned_cols=133  Identities=20%  Similarity=0.203  Sum_probs=110.5

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCccccc--CCccc--cCCCcCcEEeccccccCC--CCCc-ccCCCC
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGK--VPEEL--GNLTNLVSLDLYLNNLNG--PIPT-TLGKLS  141 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~--~p~~~--~~l~~L~~L~ls~N~l~g--~~p~-~~~~l~  141 (419)
                      .+++.|+|++|.+++..|..|+.+++|++|+|++|.+.|.  +|..+  ..+++|++|+|++|++++  .+|. .+.+++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV  228 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence            6799999999999998889999999999999999998876  44455  889999999999999983  3333 335789


Q ss_pred             CCCEEEcccCcCcccCC-ccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCCC
Q 014778          142 KLRFLRLNNNSLMGEIP-RSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       142 ~L~~l~l~~N~l~g~~p-~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~  203 (419)
                      +|+.|+|++|++++.+| ..+..+++|++|++++|+++ .+|.... .+++.+++++|++...
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-SEEEEEECCSSCCCSC
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-CCceEEECCCCCCCCC
Confidence            99999999999998775 45677899999999999998 6665433 7889999999988765

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.58  E-value=2.8e-15  Score=151.72  Aligned_cols=133  Identities=26%  Similarity=0.339  Sum_probs=115.3

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccc--cCCccccCCCcCcEEeccccccCCCCCcc-cCCCCCCC
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISG--KVPEELGNLTNLVSLDLYLNNLNGPIPTT-LGKLSKLR  144 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g--~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~l~~L~  144 (419)
                      ..+++.|+|++|.+++.+|..++.+++|++|+|++|.+++  .+|..+..+++|++|++++|.+++.+|.. +..+++|+
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~  402 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLL  402 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred             CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCC
Confidence            4578999999999999899999999999999999999996  67788999999999999999999878875 78889999


Q ss_pred             EEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCC-CCCCccccccccccCCCCCCC
Q 014778          145 FLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP-TNGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       145 ~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p-~~~~~~~~~~~~~~~n~~~~~  203 (419)
                      .|+|++|++++.+|..+.  ++|+.|++++|+++ .+| ....++.++.+++++|.+..-
T Consensus       403 ~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l  459 (520)
T 2z7x_B          403 SLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSV  459 (520)
T ss_dssp             EEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             EEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCcc
Confidence            999999999988887765  78999999999998 555 355778889999999988753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.58  E-value=6.8e-15  Score=150.42  Aligned_cols=136  Identities=27%  Similarity=0.341  Sum_probs=117.9

Q ss_pred             CCCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccc--cCCccccCCCcCcEEeccccccCCCCCcc-cCCCCCC
Q 014778           67 SENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISG--KVPEELGNLTNLVSLDLYLNNLNGPIPTT-LGKLSKL  143 (419)
Q Consensus        67 ~~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g--~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~l~~L  143 (419)
                      ...+++.|+|++|.+++.+|..++++++|++|+|++|.+++  .+|..+..+++|++|++++|++++.+|.. +..+++|
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            34679999999999999999999999999999999999996  45677999999999999999999877765 7889999


Q ss_pred             CEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCCCC
Q 014778          144 RFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPP  204 (419)
Q Consensus       144 ~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~~  204 (419)
                      +.|+|++|++++.+|..+.  ++|+.|++++|+++..++....+..++.+++++|.+..-+
T Consensus       431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~  489 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVP  489 (562)
T ss_dssp             CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCC
T ss_pred             CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCC
Confidence            9999999999988887665  7899999999999954445667888999999999987543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.58  E-value=6.8e-15  Score=151.52  Aligned_cols=130  Identities=23%  Similarity=0.171  Sum_probs=110.8

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      ..++.|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+|
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  154 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM  154 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence            46899999999999988889999999999999999999888888999999999999999999544444699999999999


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQL  200 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~  200 (419)
                      ++|.+++..|..|+.+++|+.|++++|.+++..+  ..+..+..+++++|.+
T Consensus       155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLL  204 (597)
T ss_dssp             CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG--GGCTTCSEEECCSSCC
T ss_pred             eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh--hhhhhhhhhhcccCcc
Confidence            9999999999999999999999999999987532  2234444444444433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.58  E-value=2.1e-15  Score=153.45  Aligned_cols=136  Identities=28%  Similarity=0.392  Sum_probs=97.7

Q ss_pred             CCCCCCCCCCCC-----Cccee-EeCCCCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCc
Q 014778           47 LQSWDATLVNPC-----TWFHV-TCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLV  120 (419)
Q Consensus        47 l~~w~~~~~~~c-----~w~~v-~c~~~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~  120 (419)
                      +.+|... .+||     .|.|+ .|. .++++.|+|++|+|++ +|..+.  ++|++|+|++|.|+ .+|   ..+++|+
T Consensus        33 l~~W~~~-~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~  103 (571)
T 3cvr_A           33 WDKWEKQ-ALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLE  103 (571)
T ss_dssp             HHHHHTT-CCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCC
T ss_pred             HHHHhcc-CCccccccchhhhccccc-cCCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCC
Confidence            4456543 5788     69999 775 3578899999999987 776663  67888888888888 677   4567888


Q ss_pred             EEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCC
Q 014778          121 SLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQL  200 (419)
Q Consensus       121 ~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~  200 (419)
                      +|+|++|+|++ +|. +.+  +|+.|+|++|++++ +|.   .+++|+.|++++|++++ +|.  .+.+++.+++++|.+
T Consensus       104 ~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~L  172 (571)
T 3cvr_A          104 YLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRNNQL  172 (571)
T ss_dssp             EEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCC
T ss_pred             EEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCCCCC
Confidence            88888888875 777 554  77788888877775 665   56677777777777776 444  345566666666665


Q ss_pred             CC
Q 014778          201 NN  202 (419)
Q Consensus       201 ~~  202 (419)
                      ..
T Consensus       173 ~~  174 (571)
T 3cvr_A          173 TF  174 (571)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.58  E-value=6e-15  Score=149.25  Aligned_cols=132  Identities=20%  Similarity=0.279  Sum_probs=117.8

Q ss_pred             CCCEEEEEcCCCCccc--cchhhhhCCCCCCEEEcccCcccccCCcc-ccCCCcCcEEeccccccCCCCCcccCCCCCCC
Q 014778           68 ENSVTRVDLGNANLSG--QLVSQLGQLTNLQYLELYSNNISGKVPEE-LGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLR  144 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g--~~~~~~~~l~~L~~L~L~~N~l~g~~p~~-~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~  144 (419)
                      ..+++.|+|++|++++  .+|..++.+++|++|+|++|.+++.+|.. +..+++|+.|++++|++++.+|..+.  ++|+
T Consensus       347 l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~  424 (520)
T 2z7x_B          347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIK  424 (520)
T ss_dssp             CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCC
T ss_pred             CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCC
Confidence            3579999999999998  67889999999999999999999878875 88899999999999999999988775  7999


Q ss_pred             EEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCC
Q 014778          145 FLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       145 ~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~  202 (419)
                      .|+|++|+++ .+|..+..+++|+.|++++|++++..+. ...+..++.+++++|++.+
T Consensus       425 ~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c  482 (520)
T 2z7x_B          425 VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  482 (520)
T ss_dssp             EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             EEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence            9999999999 8999888999999999999999964443 5667889999999998764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.58  E-value=1.6e-15  Score=159.33  Aligned_cols=133  Identities=24%  Similarity=0.337  Sum_probs=115.1

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ...++.|+|++|.+. .+|..+.++++|++|+|++|.|+ .+|..|+.|++|++|||++|+|+ .+|..|++|++|++|+
T Consensus       223 l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          223 DQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred             CCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence            457899999999998 78888999999999999999999 89999999999999999999999 8999999999999999


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCcc--ccccccccCCCCCCCC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFS--LFTPISFANNQLNNPP  204 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~--~~~~~~~~~n~~~~~~  204 (419)
                      |++|.|+ .+|..|+++++|+.|+|++|+|+|.+|......  ....+.+.+|.+.+..
T Consensus       300 L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~  357 (727)
T 4b8c_D          300 FFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL  357 (727)
T ss_dssp             CCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred             CCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence            9999997 899999999999999999999999888532111  1122456667665443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.57  E-value=5.3e-15  Score=151.21  Aligned_cols=127  Identities=20%  Similarity=0.184  Sum_probs=114.2

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|+|++|.+++..|..|+++++|++|+|++|.+++..|..|..+++|++|||++|+++ .+|..  .+++|++|+|
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            57999999999999988899999999999999999999888999999999999999999998 78887  8999999999


Q ss_pred             ccCcCcc-cCCccCcCCCCCcEEEcccCcCCCCCCCCCCcccc--ccccccCCCC
Q 014778          149 NNNSLMG-EIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLF--TPISFANNQL  200 (419)
Q Consensus       149 ~~N~l~g-~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~--~~~~~~~n~~  200 (419)
                      ++|++++ .+|..++++++|++|++++|++++.  ....+..+  +.+++++|.+
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence            9999987 5678999999999999999999863  33344455  8888888877

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.57  E-value=5.7e-15  Score=139.90  Aligned_cols=129  Identities=27%  Similarity=0.197  Sum_probs=97.0

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccC-CCCCCCEEE
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLG-KLSKLRFLR  147 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~-~l~~L~~l~  147 (419)
                      ..++.|++++|.+++..+..   +++|++|+|++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|+
T Consensus        99 ~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  175 (317)
T 3o53_A           99 PSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (317)
T ss_dssp             TTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             CCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence            46777777777777655433   56788888888888877677788888888888888888876666663 678888888


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      |++|++++. |. ...+++|+.|++++|++++.+|....+..++.+++++|.+..
T Consensus       176 L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~  228 (317)
T 3o53_A          176 LQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL  228 (317)
T ss_dssp             CTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred             CCCCcCccc-cc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc
Confidence            888888754 33 334788888888888888766666667778888888887764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.57  E-value=8.7e-15  Score=149.53  Aligned_cols=134  Identities=18%  Similarity=0.198  Sum_probs=101.3

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            35778888888888777777888888888888888888766677888888888888888887666677888888888888


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCC-CCCC-CCCccccccccccCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTG-DIPT-NGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g-~~p~-~~~~~~~~~~~~~~n~~~~  202 (419)
                      ++|++++..+..++++++|++|++++|.+++ .+|. ...+.+++.+++++|.+..
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence            8888775544467788888888888888776 4453 4556677777777776653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.56  E-value=5.7e-15  Score=147.79  Aligned_cols=135  Identities=21%  Similarity=0.215  Sum_probs=114.5

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..+++.|+|++|.+++..|..|+++++|++|+|++|.+++..+..|.++++|++|+|++|++++..|..+.++++|+.|+
T Consensus        55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~  134 (477)
T 2id5_A           55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE  134 (477)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence            35789999999999998899999999999999999999955555688999999999999999988888999999999999


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~  202 (419)
                      |++|.+++..|..|.++++|+.|++++|++++..+. ...+..++.+++++|.+..
T Consensus       135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            999999988888899999999999999999875542 3455666777777766543

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.56  E-value=4e-15  Score=142.62  Aligned_cols=121  Identities=15%  Similarity=0.191  Sum_probs=100.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CC-CEEEEEEccccccccCHHHHHHHHHHHhcCCCCC------CcceeEEEecCCc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DG-SLVAVKRLKEERTQGGELQFQTEVEMISMAVHRN------LLRLRGFCMTPTE  359 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g-~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~n------iv~l~g~~~~~~~  359 (419)
                      ++|...+.||+|+||.||+|... ++ +.||||+++...  ...+.+.+|+.++..++|++      ++.+.+++...+.
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~   96 (355)
T 2eu9_A           19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG--KYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH   96 (355)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH--HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred             ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc--cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence            56788899999999999999964 44 689999996432  23457889999999887766      8999999999999


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++||||+ +|++.+++.....     ..+++.++..++.||+.||+|||+.   +|+||
T Consensus        97 ~~lv~e~~-~~~l~~~l~~~~~-----~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~  147 (355)
T 2eu9_A           97 MCIAFELL-GKNTFEFLKENNF-----QPYPLPHVRHMAYQLCHALRFLHEN---QLTHT  147 (355)
T ss_dssp             EEEEEECC-CCBHHHHHHHTTT-----CCCCHHHHHHHHHHHHHHHHHHHTT---TEECC
T ss_pred             EEEEEecc-CCChHHHHHhccC-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            99999999 5677777765421     1478889999999999999999999   99998

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.56  E-value=1.6e-14  Score=143.16  Aligned_cols=133  Identities=20%  Similarity=0.297  Sum_probs=105.8

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+.++++|+.|+|
T Consensus        88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l  167 (440)
T 3zyj_A           88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL  167 (440)
T ss_dssp             SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence            57899999999999988889999999999999999999655567999999999999999998655567788888888888


Q ss_pred             ccCcCcccCCc-cCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCC
Q 014778          149 NNNSLMGEIPR-SLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       149 ~~N~l~g~~p~-~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      ++|+..+.+|. .|.++++|+.|++++|+++ .+|....+.+++.+++++|.+..
T Consensus       168 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             CCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSCCCE
T ss_pred             CCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCCccCc
Confidence            88554444443 5777888888888888777 45666666667777777776553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.56  E-value=3.5e-15  Score=153.82  Aligned_cols=135  Identities=20%  Similarity=0.201  Sum_probs=115.2

Q ss_pred             CCEEEEEcCCCCccccchhh-hhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCC---CCcccCCCCCCC
Q 014778           69 NSVTRVDLGNANLSGQLVSQ-LGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGP---IPTTLGKLSKLR  144 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~-~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~---~p~~~~~l~~L~  144 (419)
                      .+++.|+|++|.+++..++. +..+++|++|+|++|.+++..|..+..+++|++|++++|++++.   .+..+..+++|+
T Consensus       400 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~  479 (606)
T 3t6q_A          400 PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE  479 (606)
T ss_dssp             TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCC
T ss_pred             ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCcc
Confidence            56889999999999877654 88999999999999999988888899999999999999999862   345688899999


Q ss_pred             EEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCCCC
Q 014778          145 FLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNNPP  204 (419)
Q Consensus       145 ~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~~~  204 (419)
                      .|+|++|++++..|..+..+++|+.|++++|++++.+|. ...+..+ .+++++|.+...+
T Consensus       480 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~  539 (606)
T 3t6q_A          480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL  539 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCC
T ss_pred             EEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccC
Confidence            999999999988889999999999999999999988773 4566777 8888999887543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.56  E-value=3.5e-15  Score=140.89  Aligned_cols=130  Identities=18%  Similarity=0.202  Sum_probs=75.3

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCccccc--C--CccccCCCcCcEEeccccccCCCCCc----ccCCCC
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGK--V--PEELGNLTNLVSLDLYLNNLNGPIPT----TLGKLS  141 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~--~--p~~~~~l~~L~~L~ls~N~l~g~~p~----~~~~l~  141 (419)
                      +++.|+|++|.+++..+..++.+++|++|+|++|.+.+.  +  +..++.+++|++|+|++|+++ .+|.    .+++++
T Consensus       146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~  224 (310)
T 4glp_A          146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGV  224 (310)
T ss_dssp             CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTC
T ss_pred             CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCC
Confidence            456666666666655556666666666666666665432  2  122345666666666666664 2333    134556


Q ss_pred             CCCEEEcccCcCcccCCccCcCC---CCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCC
Q 014778          142 KLRFLRLNNNSLMGEIPRSLTNV---NSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       142 ~L~~l~l~~N~l~g~~p~~l~~l---~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      +|++|||++|++++.+|..+..+   ++|+.|++++|+++ .+|... +.+++.+++++|.+.+
T Consensus       225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~-~~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL-PAKLRVLDLSSNRLNR  286 (310)
T ss_dssp             CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC-CSCCSCEECCSCCCCS
T ss_pred             CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh-cCCCCEEECCCCcCCC
Confidence            66666666666666656655555   46666666666666 344322 2566666666666654

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.56  E-value=3.5e-15  Score=151.47  Aligned_cols=110  Identities=5%  Similarity=0.045  Sum_probs=84.6

Q ss_pred             CCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccc-------cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          291 SNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQ-------GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       291 ~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~-------~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      ...+.||+|+||.||+|.. .++.+|+|+.......       ...+.|.+|++++++++||||+++..++...+..++|
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV  417 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM  417 (540)
T ss_dssp             ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred             CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence            3457899999999999965 4788999986432111       1134589999999999999999888888888888999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.++++.               +..++.|+++||+|||+.   +|+||
T Consensus       418 mE~~~ggsL~~~l~~---------------~~~i~~qi~~aL~~LH~~---gIiHr  455 (540)
T 3en9_A          418 MSYINGKLAKDVIED---------------NLDIAYKIGEIVGKLHKN---DVIHN  455 (540)
T ss_dssp             EECCCSEEHHHHSTT---------------CTHHHHHHHHHHHHHHHT---TEECT
T ss_pred             EECCCCCCHHHHHHH---------------HHHHHHHHHHHHHHHHHC---cCccC
Confidence            999999999999885               235899999999999999   99998

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.56  E-value=2.3e-15  Score=151.10  Aligned_cols=131  Identities=18%  Similarity=0.181  Sum_probs=79.6

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCc----------------cccCCCcCcEEeccccccCCC
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPE----------------ELGNLTNLVSLDLYLNNLNGP  132 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~----------------~~~~l~~L~~L~ls~N~l~g~  132 (419)
                      .+++.|+|++|.+++.+|  ++.+++|++|+|++|.|++..+.                ....+++|+.|+|++|++++.
T Consensus        58 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~  135 (487)
T 3oja_A           58 TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML  135 (487)
T ss_dssp             TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSG
T ss_pred             CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCC
Confidence            456666666666666544  66666666666666655532110                001234555666666666665


Q ss_pred             CCcccCCCCCCCEEEcccCcCcccCCccCc-CCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCC
Q 014778          133 IPTTLGKLSKLRFLRLNNNSLMGEIPRSLT-NVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       133 ~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~-~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      .|..++++++|+.|+|++|.+++.+|..+. .+++|+.|++++|.+++. |....++.+..+++++|.+.+
T Consensus       136 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~  205 (487)
T 3oja_A          136 RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF  205 (487)
T ss_dssp             GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE
T ss_pred             CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cccccCCCCCEEECCCCCCCC
Confidence            666666677777777777777766666664 567777777777777665 333346667777777777664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.56  E-value=1.7e-14  Score=140.48  Aligned_cols=130  Identities=24%  Similarity=0.214  Sum_probs=113.7

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcc-cCCCCCCCEEE
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTT-LGKLSKLRFLR  147 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~l~~L~~l~  147 (419)
                      .+++.|+|++|.+++..+..|+.+++|++|+|++|.+++..|..+..+++|++|++++|+++ .+|.. +.++++|++|+
T Consensus        69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~  147 (390)
T 3o6n_A           69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS  147 (390)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEE
Confidence            57899999999999988889999999999999999999888888999999999999999999 56665 58999999999


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~  201 (419)
                      |++|++++..|..+..+++|+.|++++|++++..  ...+..+..+++++|.+.
T Consensus       148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCS
T ss_pred             CCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccc
Confidence            9999999888888999999999999999998752  334556666666666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.55  E-value=4.6e-15  Score=140.08  Aligned_cols=130  Identities=24%  Similarity=0.308  Sum_probs=110.0

Q ss_pred             CCCEEEEEcCCCCcccc--chh--hhhCCCCCCEEEcccCcccccCCc----cccCCCcCcEEeccccccCCCCCcccCC
Q 014778           68 ENSVTRVDLGNANLSGQ--LVS--QLGQLTNLQYLELYSNNISGKVPE----ELGNLTNLVSLDLYLNNLNGPIPTTLGK  139 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~--~~~--~~~~l~~L~~L~L~~N~l~g~~p~----~~~~l~~L~~L~ls~N~l~g~~p~~~~~  139 (419)
                      ..+++.|+|++|.+.+.  ++.  .++.+++|++|+|++|.++ .+|.    .+..+++|++|||++|++++.+|..++.
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~  246 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR  246 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS
T ss_pred             CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh
Confidence            35799999999998874  332  3478999999999999997 3443    2578899999999999999888988888


Q ss_pred             C---CCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCC
Q 014778          140 L---SKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       140 l---~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      +   ++|+.|+|++|+++ .+|..+.  ++|+.|++++|++++. |....+..++.+++++|++..
T Consensus       247 ~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          247 CMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTSC
T ss_pred             ccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCCC
Confidence            7   69999999999999 7888775  8999999999999984 445677889999999998764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.55  E-value=1.1e-14  Score=152.20  Aligned_cols=136  Identities=24%  Similarity=0.232  Sum_probs=120.8

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|+|++|.+++..|..|+++++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..++++++|++|+|
T Consensus        49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  128 (680)
T 1ziw_A           49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL  128 (680)
T ss_dssp             TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred             CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence            57999999999999999999999999999999999999544447999999999999999999777788999999999999


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCC---CCccccccccccCCCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN---GSFSLFTPISFANNQLNNPP  204 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~---~~~~~~~~~~~~~n~~~~~~  204 (419)
                      ++|.+++..|..+.++++|++|++++|++++..|..   ...+.++.+++++|.+...+
T Consensus       129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  187 (680)
T 1ziw_A          129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS  187 (680)
T ss_dssp             CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred             CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccC
Confidence            999999999999999999999999999999877642   23467889999999876543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.55  E-value=3.1e-15  Score=129.16  Aligned_cols=126  Identities=22%  Similarity=0.224  Sum_probs=103.9

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCC-CCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcc-cCCCCCCCEE
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLT-NLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTT-LGKLSKLRFL  146 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~-~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~l~~L~~l  146 (419)
                      ..++.|+|++|+++. +| .+..+. +|++|+|++|.+++.  +.+..+++|++|++++|++++ +|+. +..+++|+.|
T Consensus        19 ~~L~~L~l~~n~l~~-i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           19 VRDRELDLRGYKIPV-IE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTEL   93 (176)
T ss_dssp             TSCEEEECTTSCCCS-CC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEE
T ss_pred             CCceEEEeeCCCCch-hH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchhhcCCCCCEE
Confidence            468999999999995 44 466555 999999999999964  689999999999999999995 5544 4899999999


Q ss_pred             EcccCcCcccCCc--cCcCCCCCcEEEcccCcCCCCCCC----CCCccccccccccCCCC
Q 014778          147 RLNNNSLMGEIPR--SLTNVNSLQVLDLSNNKLTGDIPT----NGSFSLFTPISFANNQL  200 (419)
Q Consensus       147 ~l~~N~l~g~~p~--~l~~l~~L~~l~l~~N~l~g~~p~----~~~~~~~~~~~~~~n~~  200 (419)
                      +|++|+++ .+|.  .+..+++|+.|++++|+++...+.    ...+..++.+++++|..
T Consensus        94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            99999995 6776  789999999999999999854332    45567777888877754

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.55  E-value=2.2e-14  Score=142.66  Aligned_cols=132  Identities=17%  Similarity=0.244  Sum_probs=103.7

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|+|++|.+++..+..|.++++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..+.++++|+.|+|
T Consensus        99 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  178 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL  178 (452)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeC
Confidence            57899999999999988899999999999999999999666667999999999999999998555557778888888888


Q ss_pred             ccCcCcccCCc-cCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCC
Q 014778          149 NNNSLMGEIPR-SLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       149 ~~N~l~g~~p~-~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~  201 (419)
                      ++|+..+.+|. .+.++++|+.|++++|++++ +|....+.+++.+++++|.+.
T Consensus       179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~  231 (452)
T 3zyi_A          179 GELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFP  231 (452)
T ss_dssp             CCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTTSCCS
T ss_pred             CCCCCccccChhhccCCCCCCEEECCCCcccc-cccccccccccEEECcCCcCc
Confidence            87544444443 57777777777777777775 355555666666666666554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.55  E-value=6e-15  Score=141.82  Aligned_cols=132  Identities=18%  Similarity=0.227  Sum_probs=113.3

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCcc-ccCCCcCcEEeccccccCCCCCc--ccCCCCCCC
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEE-LGNLTNLVSLDLYLNNLNGPIPT--TLGKLSKLR  144 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~-~~~l~~L~~L~ls~N~l~g~~p~--~~~~l~~L~  144 (419)
                      ..+++.|+|++|.+++..|..|+++++|++|+|++|.+++ +|.. +..+++|++|++++|+++ .+|.  .+.++++|+
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~  152 (353)
T 2z80_A           75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQ  152 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCC
T ss_pred             CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCc
Confidence            3579999999999999888899999999999999999995 5554 899999999999999998 5665  788999999


Q ss_pred             EEEcccCc-CcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCC
Q 014778          145 FLRLNNNS-LMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLN  201 (419)
Q Consensus       145 ~l~l~~N~-l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~  201 (419)
                      .|++++|+ +++..|..+.++++|+.|++++|++++..|. ...+.+++.+++++|.+.
T Consensus       153 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  211 (353)
T 2z80_A          153 ILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI  211 (353)
T ss_dssp             EEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred             EEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence            99999995 6666677899999999999999999988664 566677777887777653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.55  E-value=5.2e-15  Score=150.60  Aligned_cols=116  Identities=21%  Similarity=0.246  Sum_probs=104.5

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCC-CCCcccCCCCCCCEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNG-PIPTTLGKLSKLRFL  146 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g-~~p~~~~~l~~L~~l  146 (419)
                      ..+++.|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+.+++|++|++++|++++ .+|..++++++|++|
T Consensus        49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L  128 (549)
T 2z81_A           49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL  128 (549)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred             CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence            3579999999999999888999999999999999999997777779999999999999999986 578889999999999


Q ss_pred             EcccCcCcccCC-ccCcCCCCCcEEEcccCcCCCCCCC
Q 014778          147 RLNNNSLMGEIP-RSLTNVNSLQVLDLSNNKLTGDIPT  183 (419)
Q Consensus       147 ~l~~N~l~g~~p-~~l~~l~~L~~l~l~~N~l~g~~p~  183 (419)
                      ++++|++.+.+| ..+.++++|+.|++++|++++.+|.
T Consensus       129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  166 (549)
T 2z81_A          129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ  166 (549)
T ss_dssp             EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             ECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence            999999666666 5799999999999999999987774

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.54  E-value=4.7e-15  Score=143.34  Aligned_cols=122  Identities=12%  Similarity=0.246  Sum_probs=101.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCC-----------CCCCcceeEEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-----------HRNLLRLRGFCM  355 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-----------H~niv~l~g~~~  355 (419)
                      ++|...+.||+|+||.||+|+. .+++.||||++....  ...+.+.+|++++.+++           |+||+++++++.
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~   96 (373)
T 1q8y_A           19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK--VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN   96 (373)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH--HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred             CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc--cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence            4677889999999999999996 578999999996332  22457889999988876           899999999998


Q ss_pred             cCC----ceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          356 TPT----ERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       356 ~~~----~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ..+    ..++||||+ +|+|.+++.....     ..+++..+..++.||+.||+|||+.+  +|+||
T Consensus        97 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~-----~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~  156 (373)
T 1q8y_A           97 HKGPNGVHVVMVFEVL-GENLLALIKKYEH-----RGIPLIYVKQISKQLLLGLDYMHRRC--GIIHT  156 (373)
T ss_dssp             EEETTEEEEEEEECCC-CEEHHHHHHHTTT-----SCCCHHHHHHHHHHHHHHHHHHHHTT--CEECS
T ss_pred             ccCCCCceEEEEEecC-CCCHHHHHHHhhc-----cCCcHHHHHHHHHHHHHHHHHHHhcC--CEEec
Confidence            654    678999999 8899999976431     14788889999999999999999843  79997

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.54  E-value=4.2e-14  Score=134.53  Aligned_cols=130  Identities=20%  Similarity=0.256  Sum_probs=79.2

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCccc--ccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEE
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNIS--GKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFL  146 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~--g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l  146 (419)
                      .+++.|++++|.+++..+..+.++++|++|+|++|.++  +..|..+..+++|++|++++|+++ .+|..+.  ++|+.|
T Consensus       121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L  197 (330)
T 1xku_A          121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTEL  197 (330)
T ss_dssp             TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEE
T ss_pred             ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEE
Confidence            46778888888888777777777888888888888775  356666777777776666666665 3454432  455555


Q ss_pred             EcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCC-CCCCccccccccccCCCCC
Q 014778          147 RLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP-TNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       147 ~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p-~~~~~~~~~~~~~~~n~~~  201 (419)
                      +|++|++++..|..+..+++|+.|++++|++++..| ....+..++.+++++|.+.
T Consensus       198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence            555555555445555555555555555555554443 2233444455555555444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.54  E-value=1.2e-14  Score=131.79  Aligned_cols=132  Identities=17%  Similarity=0.219  Sum_probs=112.5

Q ss_pred             CCCEEEEEcCCCC-ccccchhhhhCCCCCCEEEccc-CcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCC-
Q 014778           68 ENSVTRVDLGNAN-LSGQLVSQLGQLTNLQYLELYS-NNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLR-  144 (419)
Q Consensus        68 ~~~~~~l~L~~~~-l~g~~~~~~~~l~~L~~L~L~~-N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~-  144 (419)
                      ..+++.|+|++|. +++..+..|.++++|++|+|++ |.+++..|..|..+++|++|++++|++++ +|. +..+++|+ 
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~  131 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDI  131 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCS
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccccccc
Confidence            3579999999997 8877777899999999999998 99997666789999999999999999985 887 88899998 


Q ss_pred             --EEEcccC-cCcccCCccCcCCCCCc-EEEcccCcCCCCCCC-CCCccccccccccCCC-CCC
Q 014778          145 --FLRLNNN-SLMGEIPRSLTNVNSLQ-VLDLSNNKLTGDIPT-NGSFSLFTPISFANNQ-LNN  202 (419)
Q Consensus       145 --~l~l~~N-~l~g~~p~~l~~l~~L~-~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~-~~~  202 (419)
                        .|++++| ++++..+..|..+++|+ .|++++|+++ .+|. ......++.+++++|+ +..
T Consensus       132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~  194 (239)
T 2xwt_C          132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTV  194 (239)
T ss_dssp             EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCE
T ss_pred             ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCccc
Confidence              9999999 89876667799999999 9999999998 5553 3333678889999995 653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.54  E-value=1.4e-14  Score=155.08  Aligned_cols=135  Identities=24%  Similarity=0.305  Sum_probs=107.1

Q ss_pred             CCCEEEEEcCCCCccccc-hhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcc--cCCCCCCC
Q 014778           68 ENSVTRVDLGNANLSGQL-VSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTT--LGKLSKLR  144 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~-~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~--~~~l~~L~  144 (419)
                      ..+++.|+|++|++.+.+ |..|+++++|++|+|++|.+++..|..|.++++|++|+|++|++++.+|..  ++++++|+
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~  126 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT  126 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence            356888999998777777 677899999999999999998888889999999999999999998877766  88899999


Q ss_pred             EEEcccCcCcccCC-ccCcCCCCCcEEEcccCcCCCCCCCC-CCc--cccccccccCCCCCC
Q 014778          145 FLRLNNNSLMGEIP-RSLTNVNSLQVLDLSNNKLTGDIPTN-GSF--SLFTPISFANNQLNN  202 (419)
Q Consensus       145 ~l~l~~N~l~g~~p-~~l~~l~~L~~l~l~~N~l~g~~p~~-~~~--~~~~~~~~~~n~~~~  202 (419)
                      +|+|++|.+++..| ..|+++++|++|++++|++++..|.. ..+  ..++.+++++|.+..
T Consensus       127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~  188 (844)
T 3j0a_A          127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS  188 (844)
T ss_dssp             EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC
T ss_pred             EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccc
Confidence            99999999887654 57888999999999999888776632 222  345555565555443

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.53  E-value=9.9e-15  Score=141.92  Aligned_cols=124  Identities=23%  Similarity=0.330  Sum_probs=101.2

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCC-CC-----CCcceeEEEecCCc
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-HR-----NLLRLRGFCMTPTE  359 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H~-----niv~l~g~~~~~~~  359 (419)
                      .++|...+.||+|+||+||+|... +++.||||+++...  ....++.+|+.++..++ |+     +++++.+++...+.
T Consensus        53 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~--~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~  130 (382)
T 2vx3_A           53 MDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK--AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNH  130 (382)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH--HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTE
T ss_pred             eeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH--HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCc
Confidence            567888899999999999999964 68899999996432  22456788888888775 44     49999999999999


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++||||++ |+|.+++.....     ..+++..+..++.|++.||+|||.+ ..+||||
T Consensus       131 ~~lv~e~~~-~~L~~~l~~~~~-----~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHr  183 (382)
T 2vx3_A          131 LCLVFEMLS-YNLYDLLRNTNF-----RGVSLNLTRKFAQQMCTALLFLATP-ELSIIHC  183 (382)
T ss_dssp             EEEEEECCC-CBHHHHHHHTTT-----SCCCHHHHHHHHHHHHHHHHHHTST-TTCEECC
T ss_pred             eEEEEecCC-CCHHHHHhhcCc-----CCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcC
Confidence            999999996 599999986431     1478889999999999999999942 2289998

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.53  E-value=3.1e-14  Score=133.17  Aligned_cols=125  Identities=26%  Similarity=0.404  Sum_probs=95.9

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|+|++|.+++..+  +..+++|++|+|++|.+++ +| .+..+++|++|++++|++++ + +.+..+++|+.|++
T Consensus        68 ~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l  141 (291)
T 1h6t_A           68 PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL  141 (291)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEEC
T ss_pred             CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEc
Confidence            467888888888887544  8888888888888888874 44 47888888888888888874 3 45778888888888


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      ++|++++.  ..+..+++|+.|++++|++++..| ...+..++.+++++|.+..
T Consensus       142 ~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          142 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB
T ss_pred             cCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC
Confidence            88888754  467788888888888888887665 6667777888888887654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.53  E-value=2.5e-14  Score=137.14  Aligned_cols=111  Identities=23%  Similarity=0.226  Sum_probs=95.4

Q ss_pred             CCCcceeEeCCCCCEEEEEcCCC-CccccchhhhhCCCCCCEEEccc-CcccccCCccccCCCcCcEEeccccccCCCCC
Q 014778           57 PCTWFHVTCNSENSVTRVDLGNA-NLSGQLVSQLGQLTNLQYLELYS-NNISGKVPEELGNLTNLVSLDLYLNNLNGPIP  134 (419)
Q Consensus        57 ~c~w~~v~c~~~~~~~~l~L~~~-~l~g~~~~~~~~l~~L~~L~L~~-N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p  134 (419)
                      .|.|..|.|+           ++ +|++ +|. |..+++|++|+|++ |.|++..|..|..|++|+.|+|++|+|++..|
T Consensus         7 ~C~~~~v~~~-----------~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~   73 (347)
T 2ifg_A            7 PHGSSGLRCT-----------RDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP   73 (347)
T ss_dssp             CSSSSCEECC-----------SSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred             cccCCEEEcC-----------CCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH
Confidence            3777766665           44 6765 787 99999999999996 99998777889999999999999999999888


Q ss_pred             cccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCC
Q 014778          135 TTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDI  181 (419)
Q Consensus       135 ~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~  181 (419)
                      ..|.++++|+.|+|++|+|++..|..+..+. |+.|++++|+|....
T Consensus        74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c  119 (347)
T 2ifg_A           74 DAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHCSC  119 (347)
T ss_dssp             TGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCCG
T ss_pred             HHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccCCC
Confidence            8999999999999999999966555666665 999999999998753

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.53  E-value=2.2e-14  Score=133.56  Aligned_cols=119  Identities=10%  Similarity=-0.012  Sum_probs=91.0

Q ss_pred             HHHHHHHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccc-----------------cCHHHHHHHHHHHhcC
Q 014778          280 LRELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQ-----------------GGELQFQTEVEMISMA  342 (419)
Q Consensus       280 ~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~-----------------~~~~~f~~E~~~l~~l  342 (419)
                      +..+......|...+.||+|+||.||+|...+|+.||||.++.....                 .....+.+|+.+|+++
T Consensus        82 l~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l  161 (282)
T 1zar_A           82 LHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL  161 (282)
T ss_dssp             HHHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhc
Confidence            34444455556667899999999999999977999999999632211                 1235689999999999


Q ss_pred             CCCCCcceeEEEecCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          343 VHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       343 ~H~niv~l~g~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +  | +++.+++.. +..++||||+++|+|.+ +...             +...++.|+++||+|||+.   +|+||
T Consensus       162 ~--~-~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~~-------------~~~~i~~qi~~~l~~lH~~---giiHr  217 (282)
T 1zar_A          162 Q--G-LAVPKVYAW-EGNAVLMELIDAKELYR-VRVE-------------NPDEVLDMILEEVAKFYHR---GIVHG  217 (282)
T ss_dssp             T--T-SSSCCEEEE-ETTEEEEECCCCEEGGG-CCCS-------------CHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             c--C-CCcCeEEec-cceEEEEEecCCCcHHH-cchh-------------hHHHHHHHHHHHHHHHHHC---CCEeC
Confidence            9  5 677665543 56799999999999998 4321             1235899999999999999   99998

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.52  E-value=5.8e-14  Score=120.50  Aligned_cols=106  Identities=23%  Similarity=0.262  Sum_probs=95.4

Q ss_pred             CCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEccc
Q 014778           95 LQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSN  174 (419)
Q Consensus        95 L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~  174 (419)
                      .+.|++++|.++ .+|..+.  ++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|++++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            578999999999 6898774  8999999999999988899999999999999999999977777789999999999999


Q ss_pred             CcCCCCCCC-CCCccccccccccCCCCCCC
Q 014778          175 NKLTGDIPT-NGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       175 N~l~g~~p~-~~~~~~~~~~~~~~n~~~~~  203 (419)
                      |+|++.+|. ...+.+++.+++++|++.+.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            999988775 67788999999999987653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.51  E-value=7.2e-14  Score=120.42  Aligned_cols=105  Identities=22%  Similarity=0.235  Sum_probs=94.2

Q ss_pred             CEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccC
Q 014778           96 QYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNN  175 (419)
Q Consensus        96 ~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N  175 (419)
                      +.+++++|.++ .+|..+.  ++|+.|+|++|++++..|..|+++++|+.|+|++|+|++..+..|.++++|+.|++++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            68999999997 8998875  89999999999999888999999999999999999999766666899999999999999


Q ss_pred             cCCCCCCC-CCCccccccccccCCCCCCC
Q 014778          176 KLTGDIPT-NGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       176 ~l~g~~p~-~~~~~~~~~~~~~~n~~~~~  203 (419)
                      +|++.++. ...+.+++.+++++|++.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence            99987775 67788999999999987643

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.51  E-value=1.1e-14  Score=148.52  Aligned_cols=111  Identities=12%  Similarity=0.002  Sum_probs=83.7

Q ss_pred             eCcCCceEEEEEE-eCCCCEEEEEEccccc---------cccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEEe
Q 014778          296 LGRGGFGKVYKGR-LTDGSLVAVKRLKEER---------TQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       296 lG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~---------~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      .+.|++|.+.++. +-.|+.+|||.+....         .....++|.+|+++|+++ .|+||+++++++.+++..||||
T Consensus       242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM  321 (569)
T 4azs_A          242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM  321 (569)
T ss_dssp             -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred             cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence            4556666555544 2358889999995331         112245799999999999 7999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||++||+|.++|.+..       .++.   .+|+.||+.||+|+|++   +||||
T Consensus       322 Eyv~G~~L~d~i~~~~-------~l~~---~~I~~QIl~AL~ylH~~---GIIHR  363 (569)
T 4azs_A          322 EKLPGRLLSDMLAAGE-------EIDR---EKILGSLLRSLAALEKQ---GFWHD  363 (569)
T ss_dssp             ECCCSEEHHHHHHTTC-------CCCH---HHHHHHHHHHHHHHHHT---TCEES
T ss_pred             ecCCCCcHHHHHHhCC-------CCCH---HHHHHHHHHHHHHHHHC---Cceec
Confidence            9999999999998754       3433   35889999999999999   99998

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.51  E-value=5.3e-14  Score=134.03  Aligned_cols=133  Identities=23%  Similarity=0.256  Sum_probs=70.9

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCccc--ccCCccccCC--------------------CcCcEEecccc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNIS--GKVPEELGNL--------------------TNLVSLDLYLN  127 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~--g~~p~~~~~l--------------------~~L~~L~ls~N  127 (419)
                      +++.|+|++|.+++..+..+..+++|++|+|++|.++  +..|..+..+                    ++|+.|++++|
T Consensus       124 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n  203 (332)
T 2ft3_A          124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHN  203 (332)
T ss_dssp             TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSS
T ss_pred             cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCC
Confidence            4556666666666544455666777777777777664  2445555444                    23444444444


Q ss_pred             ccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCC
Q 014778          128 NLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       128 ~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      .+++..|..+.++++|+.|+|++|++++..|..+..+++|+.|++++|+++..++....+..++.+++++|.+..
T Consensus       204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITK  278 (332)
T ss_dssp             CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCB
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCc
Confidence            444444444555555555555555555544445555555555555555555222223344455555555555543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.51  E-value=6.7e-14  Score=132.01  Aligned_cols=125  Identities=25%  Similarity=0.418  Sum_probs=90.7

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|+|++|.+++..+  +..+++|++|+|++|.+++ +| .+..+++|++|++++|++++ +|. +..+++|+.|+|
T Consensus        63 ~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l  136 (308)
T 1h6u_A           63 NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYL  136 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEEC
Confidence            467788888888876433  7788888888888888774 33 57778888888888888774 443 777788888888


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      ++|++++..+  +..+++|+.|++++|++++..+ ...+.+++.+++++|.+..
T Consensus       137 ~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          137 DLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             CSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred             CCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc
Confidence            8888775433  7777788888888887776544 5566677777777777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.50  E-value=5.1e-14  Score=129.73  Aligned_cols=124  Identities=24%  Similarity=0.263  Sum_probs=74.6

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|+|++|.+++..+  +..+++|++|+|++|.+++ +|....  ++|+.|++++|++++ +| .+.++++|+.|+|
T Consensus        63 ~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~L  135 (263)
T 1xeu_A           63 TNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPS--ACLSRLFLDNNELRD-TD-SLIHLKNLEILSI  135 (263)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCC--SSCCEEECCSSCCSB-SG-GGTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcccc--CcccEEEccCCccCC-Ch-hhcCcccccEEEC
Confidence            356666666666665433  6666666666666666663 443222  666666666666663 33 4666666666666


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      ++|++++. | .+..+++|+.|++++|++++. +....+..++.+++++|.+.+
T Consensus       136 s~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          136 RNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             TTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred             CCCcCCCC-h-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccC
Confidence            66666643 3 466666666666666666655 444555566666666665543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.50  E-value=3.4e-14  Score=121.55  Aligned_cols=112  Identities=24%  Similarity=0.265  Sum_probs=100.2

Q ss_pred             hCCCCCCEEEcccCccc-ccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCc
Q 014778           90 GQLTNLQYLELYSNNIS-GKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQ  168 (419)
Q Consensus        90 ~~l~~L~~L~L~~N~l~-g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~  168 (419)
                      ...++|+.|+|++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..+++|++|+|++|++++.+|..+.++++|+
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   98 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT   98 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence            34578999999999998 88999999999999999999999865  7899999999999999999988898888899999


Q ss_pred             EEEcccCcCCCCC--CCCCCccccccccccCCCCCCC
Q 014778          169 VLDLSNNKLTGDI--PTNGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       169 ~l~l~~N~l~g~~--p~~~~~~~~~~~~~~~n~~~~~  203 (419)
                      +|++++|++++..  +....+..++.+++++|.+...
T Consensus        99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~  135 (168)
T 2ell_A           99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNL  135 (168)
T ss_dssp             EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTS
T ss_pred             EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcch
Confidence            9999999999854  4567788899999999987644

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.49  E-value=4.5e-14  Score=132.12  Aligned_cols=127  Identities=28%  Similarity=0.349  Sum_probs=111.5

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..+++.|+|++|.+++ + +.+..+++|++|+|++|.+++ + +.+..+++|+.|++++|++++.  ..+..+++|+.|+
T Consensus        89 l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  162 (291)
T 1h6t_A           89 LKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS  162 (291)
T ss_dssp             CTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred             CCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEE
Confidence            4579999999999987 3 459999999999999999995 4 5789999999999999999864  6789999999999


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCCC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~  203 (419)
                      |++|++++..|  +..+++|+.|++++|++++ +|....+.+++.+++++|++...
T Consensus       163 L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEEEEEECC
T ss_pred             ccCCccccchh--hcCCCccCEEECCCCcCCC-ChhhccCCCCCEEECcCCcccCC
Confidence            99999997655  8999999999999999987 45677788899999999987653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.49  E-value=1.7e-14  Score=120.84  Aligned_cols=111  Identities=22%  Similarity=0.241  Sum_probs=98.8

Q ss_pred             CCCCCCEEEcccCccc-ccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcE
Q 014778           91 QLTNLQYLELYSNNIS-GKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQV  169 (419)
Q Consensus        91 ~l~~L~~L~L~~N~l~-g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~  169 (419)
                      ..++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..++++++|++|+|++|++++.+|..+..+++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3468999999999999 89999999999999999999999965  78999999999999999999889998888999999


Q ss_pred             EEcccCcCCCCC--CCCCCccccccccccCCCCCCC
Q 014778          170 LDLSNNKLTGDI--PTNGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       170 l~l~~N~l~g~~--p~~~~~~~~~~~~~~~n~~~~~  203 (419)
                      |++++|++++..  +....+..++.+++++|.+...
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~  128 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL  128 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence            999999999842  4556778889999999987643

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.49  E-value=9.4e-14  Score=142.59  Aligned_cols=125  Identities=27%  Similarity=0.402  Sum_probs=83.9

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|+|++|.|++..+  +..+++|+.|+|++|.|++ +| .+..+++|+.|+|++|++++ + +.+..+++|+.|+|
T Consensus        65 ~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~L  138 (605)
T 1m9s_A           65 PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL  138 (605)
T ss_dssp             TTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEEC
T ss_pred             CCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEEC
Confidence            467777777777776444  7777777777777777764 33 57777777777777777764 3 34666777777777


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      ++|++++.  ..+..+++|+.|+|++|++++.+| ...+..++.|++++|.+..
T Consensus       139 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          139 GNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             CSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB
T ss_pred             CCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCC
Confidence            77777643  456667777777777777766655 5555666666666665543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.48  E-value=1.1e-13  Score=130.46  Aligned_cols=128  Identities=27%  Similarity=0.428  Sum_probs=108.9

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..+++.|+|++|.+++.  +.+..+++|++|+|++|.+++ +|. +..+++|++|++++|++++ +|. ++.+++|+.|+
T Consensus        84 l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~  157 (308)
T 1h6u_A           84 LTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLS  157 (308)
T ss_dssp             CCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEE
T ss_pred             CCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEE
Confidence            45799999999999874  479999999999999999985 554 8999999999999999985 444 88999999999


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCCCC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPP  204 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~~  204 (419)
                      |++|++++. |. +..+++|+.|++++|++++..| ...+..++.+++++|.+...+
T Consensus       158 l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~  211 (308)
T 1h6u_A          158 IGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS  211 (308)
T ss_dssp             CCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG
T ss_pred             ccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCccc
Confidence            999999864 44 8899999999999999987654 566778889999999887543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.48  E-value=6.4e-14  Score=134.11  Aligned_cols=124  Identities=31%  Similarity=0.431  Sum_probs=68.8

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN  149 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~  149 (419)
                      +++.|+|++|.+++..+  +..+++|++|++++|.+++ + +.+..+++|+.|++++|++++ + +.+..+++|+.|+++
T Consensus       222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~  295 (347)
T 4fmz_A          222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLN  295 (347)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECC
T ss_pred             cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECc
Confidence            45555555555554322  5555566666666665553 2 345555666666666666553 2 235555666666666


Q ss_pred             cCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCC
Q 014778          150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQL  200 (419)
Q Consensus       150 ~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~  200 (419)
                      +|++++..|..+..+++|+.|++++|++++.+| ...+..++.+++++|++
T Consensus       296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVI  345 (347)
T ss_dssp             SSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC--
T ss_pred             CCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcc
Confidence            666655555556666666666666666665544 44455555566665554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.47  E-value=1.6e-13  Score=126.46  Aligned_cols=125  Identities=30%  Similarity=0.383  Sum_probs=108.4

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|++++|+++. ++ .+..+++|++|+|++|.+++ +|+ +..+++|++|+|++|++++ +|....  ++|+.|+|
T Consensus        41 ~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~~~--~~L~~L~L  113 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGIPS--ACLSRLFL  113 (263)
T ss_dssp             TTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTCCC--SSCCEEEC
T ss_pred             CcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCcccc--CcccEEEc
Confidence            578999999999985 55 79999999999999999995 555 9999999999999999985 665433  99999999


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~  203 (419)
                      ++|++++ +| .+..+++|+.|++++|++++. |....+..++.+++++|.+...
T Consensus       114 ~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          114 DNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC
T ss_pred             cCCccCC-Ch-hhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch
Confidence            9999986 44 599999999999999999975 5666778899999999988754

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.46  E-value=1.9e-16  Score=139.68  Aligned_cols=125  Identities=25%  Similarity=0.302  Sum_probs=71.0

Q ss_pred             EEEEEcCCCCccccchh------hhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCC
Q 014778           71 VTRVDLGNANLSGQLVS------QLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLR  144 (419)
Q Consensus        71 ~~~l~L~~~~l~g~~~~------~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~  144 (419)
                      ++.++++.+.++|.+|.      .++.+++|++|+|++|.+++ +| .+..+++|++|++++|+++ .+|..+..+++|+
T Consensus        20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~   96 (198)
T 1ds9_A           20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLE   96 (198)
T ss_dssp             CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCS
T ss_pred             ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCC
Confidence            34444444455554444      56666666666666666664 55 5666666666666666665 5565555556666


Q ss_pred             EEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCC--CCCCccccccccccCCCC
Q 014778          145 FLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP--TNGSFSLFTPISFANNQL  200 (419)
Q Consensus       145 ~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p--~~~~~~~~~~~~~~~n~~  200 (419)
                      .|+|++|++++ +| .+..+++|+.|++++|++++..+  ....+.+++.+++++|++
T Consensus        97 ~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           97 ELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             EEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            66666666654 34 45556666666666666654221  234445555555555544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.46  E-value=1e-13  Score=142.29  Aligned_cols=127  Identities=28%  Similarity=0.334  Sum_probs=111.3

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..+++.|+|++|.|++ + +.+..+++|+.|+|++|.+++ + +.+..|++|+.|+|++|++++.  ..+..+++|+.|+
T Consensus        86 l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~  159 (605)
T 1m9s_A           86 LKNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS  159 (605)
T ss_dssp             CTTCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEE
T ss_pred             CCCCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEE
Confidence            3579999999999987 3 479999999999999999995 4 4689999999999999999864  6789999999999


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCCC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~  203 (419)
                      |++|++++..|  +..+++|+.|+|++|++++. |....+.+++.+++++|++...
T Consensus       160 Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          160 LEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEECC
T ss_pred             CcCCcCCCchh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcCC
Confidence            99999997766  89999999999999999974 6677788899999999877643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.45  E-value=4.3e-13  Score=136.38  Aligned_cols=113  Identities=29%  Similarity=0.430  Sum_probs=60.0

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN  149 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~  149 (419)
                      +++.|+|++|+|+ .+|   ..+++|++|+|++|.|++ +|. +..  +|++|+|++|++++ +|.   .+++|+.|+|+
T Consensus        81 ~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls  148 (571)
T 3cvr_A           81 QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINAD  148 (571)
T ss_dssp             TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred             CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCC
Confidence            4566666666665 344   345566666666666654 555 443  55666666666554 554   44555555555


Q ss_pred             cCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCC
Q 014778          150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       150 ~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~  201 (419)
                      +|++++ +|.   .+++|+.|++++|++++ +|...  .+++.+++++|.+.
T Consensus       149 ~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~l~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          149 NNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPELP--ESLEALDVSTNLLE  193 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCS
T ss_pred             CCccCc-CCC---cCCCcCEEECCCCCCCC-cchhh--CCCCEEECcCCCCC
Confidence            555553 443   34455555555555554 33321  44445555555444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.44  E-value=7.5e-14  Score=132.17  Aligned_cols=125  Identities=19%  Similarity=0.173  Sum_probs=72.8

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|+|++|.+++..     ..++|++|++++|.+++..+..   +++|++|++++|++++..|..++.+++|+.|+|
T Consensus        80 ~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L  151 (317)
T 3o53_A           80 STLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL  151 (317)
T ss_dssp             TTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred             CCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence            45666666666665432     2256666666666666443322   455666666666666555556666666666666


Q ss_pred             ccCcCcccCCccC-cCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCC
Q 014778          149 NNNSLMGEIPRSL-TNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       149 ~~N~l~g~~p~~l-~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      ++|.+++..|..+ ..+++|++|++++|++++. |....+..++.+++++|.+..
T Consensus       152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~  205 (317)
T 3o53_A          152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF  205 (317)
T ss_dssp             TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE
T ss_pred             CCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCc
Confidence            6666665555544 3566666666666666544 333335556666666666553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.42  E-value=2.5e-13  Score=135.57  Aligned_cols=126  Identities=30%  Similarity=0.393  Sum_probs=94.5

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|+|++|.+++..+  +..+++|++|+|++|.+++. |+ +..+++|+.|++++|++++..|  ++.+++|+.|+|
T Consensus       243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L  316 (466)
T 1o6v_A          243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL  316 (466)
T ss_dssp             TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEEC
T ss_pred             CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEEC
Confidence            467888888888887554  77888888888888888754 33 7778888888888888875433  677888888888


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~  203 (419)
                      ++|++++..|  +..+++|+.|++++|++++. +....+..++.+++++|++.+.
T Consensus       317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~  368 (466)
T 1o6v_A          317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDL  368 (466)
T ss_dssp             CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBC
T ss_pred             cCCcCCCchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCcc
Confidence            8888876655  67778888888888887765 5556667777777777776644

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.42  E-value=1.9e-13  Score=139.49  Aligned_cols=106  Identities=25%  Similarity=0.333  Sum_probs=96.4

Q ss_pred             CCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcc
Q 014778           94 NLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLS  173 (419)
Q Consensus        94 ~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~  173 (419)
                      .|+.|+|++|.|++ +|. ++.+++|+.|+|++|+++ .+|..++++++|+.|+|++|++++ +| .++++++|+.|+++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence            57789999999995 787 999999999999999999 899999999999999999999996 78 89999999999999


Q ss_pred             cCcCCCCC-C-CCCCccccccccccCCCCCCCC
Q 014778          174 NNKLTGDI-P-TNGSFSLFTPISFANNQLNNPP  204 (419)
Q Consensus       174 ~N~l~g~~-p-~~~~~~~~~~~~~~~n~~~~~~  204 (419)
                      +|++++.+ | ....+++++.+++++|++.+.+
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            99999985 5 5677889999999999987654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=9.4e-14  Score=119.81  Aligned_cols=105  Identities=23%  Similarity=0.307  Sum_probs=93.8

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCcc-ccCCCcCcEEeccccccCCCCCc--ccCCCCCCCE
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEE-LGNLTNLVSLDLYLNNLNGPIPT--TLGKLSKLRF  145 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~-~~~l~~L~~L~ls~N~l~g~~p~--~~~~l~~L~~  145 (419)
                      .+++.|+|++|.+++.  +.++.+++|++|+|++|.|++ +|+. +..+++|++|++++|+++ .+|.  .+..+++|+.
T Consensus        42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~  117 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTY  117 (176)
T ss_dssp             TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCE
T ss_pred             CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCE
Confidence            3799999999999985  789999999999999999995 5544 489999999999999996 7887  8899999999


Q ss_pred             EEcccCcCcccCCcc----CcCCCCCcEEEcccCcCC
Q 014778          146 LRLNNNSLMGEIPRS----LTNVNSLQVLDLSNNKLT  178 (419)
Q Consensus       146 l~l~~N~l~g~~p~~----l~~l~~L~~l~l~~N~l~  178 (419)
                      |++++|.++ .+|..    +..+++|+.||++.|...
T Consensus       118 L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          118 LCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999998 66775    899999999999999764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.42  E-value=4e-13  Score=134.05  Aligned_cols=126  Identities=31%  Similarity=0.430  Sum_probs=108.8

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|+|++|.+++.  +.+..+++|++|++++|.+++..|  +..+++|+.|++++|.+++. |. +..+++|+.|+|
T Consensus       221 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L  294 (466)
T 1o6v_A          221 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLEL  294 (466)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEEC
T ss_pred             CCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEc
Confidence            5789999999999874  468899999999999999996544  88999999999999999864 44 889999999999


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~  203 (419)
                      ++|++++..|  +..+++|+.|++++|++++..| ...+..++.+++++|.+.+.
T Consensus       295 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~  346 (466)
T 1o6v_A          295 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV  346 (466)
T ss_dssp             CSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred             CCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc
Confidence            9999987554  8899999999999999998877 56778889999999987754

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.41  E-value=1.2e-12  Score=130.23  Aligned_cols=119  Identities=25%  Similarity=0.330  Sum_probs=64.0

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN  149 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~  149 (419)
                      +++.|+|++|.+++ +| +++++++|++|++++|.+++ +|..+   .+|++|++++|++++ +| .++++++|+.|+++
T Consensus       132 ~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~  203 (454)
T 1jl5_A          132 LLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD  203 (454)
T ss_dssp             TCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred             CCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence            45556666666654 44 46666666666666666653 45432   355556666666553 44 45566666666666


Q ss_pred             cCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCC
Q 014778          150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       150 ~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~  201 (419)
                      +|++++ +|...   ++|+.|++++|+++ .+|....+..++.+++++|.+.
T Consensus       204 ~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          204 NNSLKK-LPDLP---LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             SSCCSS-CCCCC---TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCS
T ss_pred             CCcCCc-CCCCc---CcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCC
Confidence            665553 33221   24455555555554 3444444555555555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.41  E-value=1.4e-12  Score=129.82  Aligned_cols=99  Identities=29%  Similarity=0.376  Sum_probs=49.1

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN  149 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~  149 (419)
                      +++.|+|++|++++. | .++.+++|++|+|++|.+++ +|  ++.+++|++|++++|++++ +|  ++++++|++|+|+
T Consensus        43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~  114 (457)
T 3bz5_A           43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCD  114 (457)
T ss_dssp             TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECC
Confidence            455555555555542 2 45555555555555555553 22  4555555555555555543 22  4455555555555


Q ss_pred             cCcCcccCCccCcCCCCCcEEEcccCcCCC
Q 014778          150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTG  179 (419)
Q Consensus       150 ~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g  179 (419)
                      +|++++ +|  ++.+++|+.|++++|++++
T Consensus       115 ~N~l~~-l~--~~~l~~L~~L~l~~N~l~~  141 (457)
T 3bz5_A          115 TNKLTK-LD--VSQNPLLTYLNCARNTLTE  141 (457)
T ss_dssp             SSCCSC-CC--CTTCTTCCEEECTTSCCSC
T ss_pred             CCcCCe-ec--CCCCCcCCEEECCCCccce
Confidence            555543 22  4445555555555555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.40  E-value=6.8e-13  Score=127.04  Aligned_cols=105  Identities=20%  Similarity=0.126  Sum_probs=93.0

Q ss_pred             CEEEcccC-cccccCCccccCCCcCcEEeccc-cccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcc
Q 014778           96 QYLELYSN-NISGKVPEELGNLTNLVSLDLYL-NNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLS  173 (419)
Q Consensus        96 ~~L~L~~N-~l~g~~p~~~~~l~~L~~L~ls~-N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~  173 (419)
                      ..++++++ .|+ .+|. |..+++|+.|+|++ |+|++..|..|+++++|+.|+|++|+|++..|..|.++++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35789998 898 5999 99999999999996 99997777889999999999999999999999999999999999999


Q ss_pred             cCcCCCCCCCCCCccccccccccCCCCCC
Q 014778          174 NNKLTGDIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       174 ~N~l~g~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      +|+|++.+|.......++.+++.+|.+.+
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCccC
Confidence            99999877755443348899999998874

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.40  E-value=1.3e-13  Score=137.10  Aligned_cols=50  Identities=8%  Similarity=0.009  Sum_probs=21.6

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcC
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNL  119 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L  119 (419)
                      .++++|++++|++ |.+|++++++++|++|+|++|.++|.+|.+++.+.+|
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L   60 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM   60 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHH
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhc
Confidence            4678888888888 7888888888888888888888888888887776643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.38  E-value=4e-12  Score=126.43  Aligned_cols=122  Identities=24%  Similarity=0.284  Sum_probs=70.8

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCc----------------------CcEEecc
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTN----------------------LVSLDLY  125 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~----------------------L~~L~ls  125 (419)
                      ..+++.|+|++|.+++ +|  ++.+++|++|+|++|.+++ +|  ++.+++                      |+.|+++
T Consensus       105 l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls  178 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCS  178 (457)
T ss_dssp             CTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECC
T ss_pred             CCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECC
Confidence            3467777777777776 33  6677777777777777765 32  444444                      4444444


Q ss_pred             ccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCCC
Q 014778          126 LNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       126 ~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~  203 (419)
                      +|++++ +|  ++.+++|+.|++++|++++.   .++.+++|+.|++++|++++ +| ...+..++.+++++|.+.+.
T Consensus       179 ~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          179 FNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             SSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCC
T ss_pred             CCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCc
Confidence            444443 33  44455555555555555532   25556666666666666666 44 44556666666666666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.36  E-value=2.2e-15  Score=132.68  Aligned_cols=111  Identities=24%  Similarity=0.291  Sum_probs=99.4

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..+++.|+|++|.+++ +| .+..+++|++|+|++|.++ .+|..+..+++|++|++++|++++ +| .+..+++|+.|+
T Consensus        47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred             CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence            3579999999999998 66 8999999999999999999 789988889999999999999985 66 688999999999


Q ss_pred             cccCcCcccCC-ccCcCCCCCcEEEcccCcCCCCCCC
Q 014778          148 LNNNSLMGEIP-RSLTNVNSLQVLDLSNNKLTGDIPT  183 (419)
Q Consensus       148 l~~N~l~g~~p-~~l~~l~~L~~l~l~~N~l~g~~p~  183 (419)
                      |++|++++..+ ..+..+++|+.|++++|++++.+|.
T Consensus       122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            99999985322 4789999999999999999988775

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.36  E-value=5.2e-13  Score=131.14  Aligned_cols=129  Identities=12%  Similarity=0.064  Sum_probs=89.8

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCC-CCCcc---------eeEE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVH-RNLLR---------LRGF  353 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H-~niv~---------l~g~  353 (419)
                      +..|...+.||+|+||.||+|.. .+|+.||||+++....  ....+.|.+|+.++..++| +|...         ....
T Consensus        77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~  156 (413)
T 3dzo_A           77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  156 (413)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred             ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence            34566778999999999999995 5799999999863322  2235689999999999987 32211         1111


Q ss_pred             ------------Eec-----CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccce
Q 014778          354 ------------CMT-----PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSIL  416 (419)
Q Consensus       354 ------------~~~-----~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~I  416 (419)
                                  ...     ....+++|+++ +|+|.++++...........+++..++.++.||++||+|||+.   +|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i  232 (413)
T 3dzo_A          157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GL  232 (413)
T ss_dssp             EECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred             cccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---Cc
Confidence                        111     12345666655 5799998852211111223688899999999999999999999   99


Q ss_pred             ecC
Q 014778          417 LFC  419 (419)
Q Consensus       417 iHR  419 (419)
                      |||
T Consensus       233 iHr  235 (413)
T 3dzo_A          233 VHT  235 (413)
T ss_dssp             ECS
T ss_pred             ccC
Confidence            998

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.35  E-value=1.9e-12  Score=124.16  Aligned_cols=117  Identities=16%  Similarity=0.191  Sum_probs=90.9

Q ss_pred             CCcceeEeCCC----------CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCc-cccCCCcCcE-Eecc
Q 014778           58 CTWFHVTCNSE----------NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPE-ELGNLTNLVS-LDLY  125 (419)
Q Consensus        58 c~w~~v~c~~~----------~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~-~~~~l~~L~~-L~ls  125 (419)
                      |.|..|.|+..          ..++.|+|++|+|+...+..|.++++|++|+|++|.+.+.+|. .|.++++|.. ++++
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            67899999631          3588999999999975556799999999999999998777775 5678888765 6777


Q ss_pred             ccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEccc
Q 014778          126 LNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSN  174 (419)
Q Consensus       126 ~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~  174 (419)
                      .|+++...|..+.++++|+.|++++|++++..+..+....++..+++.+
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~  137 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD  137 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcc
Confidence            8999866678889999999999999998865554454445555555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.33  E-value=3.1e-14  Score=135.61  Aligned_cols=108  Identities=23%  Similarity=0.197  Sum_probs=48.2

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCccccc-CCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGK-VPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~-~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .++.|++++|.+++..+. +..+++|++|+|++|.+++. +|..+..+++|++|+|++|.+++..|..++++++|++|+|
T Consensus        71 ~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           71 GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             cceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            344444444444443322 33444444444444444433 4444444444444444444444444444444444444444


Q ss_pred             ccC-cCcc-cCCccCcCCCCCcEEEcccC-cCC
Q 014778          149 NNN-SLMG-EIPRSLTNVNSLQVLDLSNN-KLT  178 (419)
Q Consensus       149 ~~N-~l~g-~~p~~l~~l~~L~~l~l~~N-~l~  178 (419)
                      ++| .+++ .+|..+.++++|+.|++++| .++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~  182 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT  182 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence            444 3433 13333444444444444444 443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.32  E-value=5.1e-13  Score=137.38  Aligned_cols=96  Identities=20%  Similarity=0.269  Sum_probs=52.3

Q ss_pred             CCCCCCCCCCCCCcceeEeC------C-CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcC
Q 014778           47 LQSWDATLVNPCTWFHVTCN------S-ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNL  119 (419)
Q Consensus        47 l~~w~~~~~~~c~w~~v~c~------~-~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L  119 (419)
                      ...|... .++|.|.|..|.      + ...++.|++++|+|+ .+|..+.  ++|++|+|++|.|+ .+|.   .+++|
T Consensus        12 w~~W~~~-~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L   83 (622)
T 3g06_A           12 WSAWRRA-APAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPEL   83 (622)
T ss_dssp             HHHHHHT-CCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTC
T ss_pred             HHHHHhc-CCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCC
Confidence            3456533 456777553211      0 123566666666666 4555444  56666666666665 4554   34566


Q ss_pred             cEEeccccccCCCCCcccCCCCCCCEEEcccCcCc
Q 014778          120 VSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLM  154 (419)
Q Consensus       120 ~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~  154 (419)
                      ++|+|++|+++ .+|.   .+++|+.|+|++|+++
T Consensus        84 ~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           84 RTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT  114 (622)
T ss_dssp             CEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred             CEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence            66666666665 4554   4455555555555555

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.31  E-value=7e-12  Score=119.82  Aligned_cols=126  Identities=25%  Similarity=0.409  Sum_probs=81.6

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|+|++|.+++. ++ +..+++|++|+|++|.+++ +| .+..+++|++|++++|++++ +|. +..+++|+.|++
T Consensus        66 ~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l  139 (347)
T 4fmz_A           66 TNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNL  139 (347)
T ss_dssp             TTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEEC
T ss_pred             CCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccC-chh-hccCCceeEEEC
Confidence            4577777777777653 33 6777777777777777763 33 56777777777777777763 443 667777777777


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      ++|.....++. +..+++|+.|++++|.+++..+ ...+..++.+++++|.+..
T Consensus       140 ~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~  191 (347)
T 4fmz_A          140 GANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIED  191 (347)
T ss_dssp             TTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCC
T ss_pred             CCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccc
Confidence            77755544433 6677777777777777665443 4455566666676666543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.31  E-value=1.3e-13  Score=131.27  Aligned_cols=131  Identities=24%  Similarity=0.288  Sum_probs=99.1

Q ss_pred             CCEEEEEcCCCCcccc-chhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEecccc-ccCCC-CCcccCCCCCCCE
Q 014778           69 NSVTRVDLGNANLSGQ-LVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLN-NLNGP-IPTTLGKLSKLRF  145 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~-~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N-~l~g~-~p~~~~~l~~L~~  145 (419)
                      .+++.|+|++|.+++. ++..+..+++|++|+|++|.+++..|..+..+++|++|++++| .+++. +|..+.++++|+.
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            5688888888888876 7778888888888888888888888888888888888888888 67653 6666777888888


Q ss_pred             EEcccC-cCccc-CCccCcCCC-CCcEEEcccC--cCC-CCCCC-CCCccccccccccCCC
Q 014778          146 LRLNNN-SLMGE-IPRSLTNVN-SLQVLDLSNN--KLT-GDIPT-NGSFSLFTPISFANNQ  199 (419)
Q Consensus       146 l~l~~N-~l~g~-~p~~l~~l~-~L~~l~l~~N--~l~-g~~p~-~~~~~~~~~~~~~~n~  199 (419)
                      |+|++| .+++. +|..+..++ +|+.|++++|  .++ +.+|. ...+.+++.+++++|.
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence            888888 77754 566677778 8888888888  444 33332 2345567777777776

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.31  E-value=2.3e-12  Score=118.22  Aligned_cols=115  Identities=13%  Similarity=0.130  Sum_probs=82.5

Q ss_pred             CCCCCeeCcCCceEEEEEEe-CCCCE--EEEEEccccccc-----------------------cCHHHHHHHHHHHhcCC
Q 014778          290 FSNRNILGRGGFGKVYKGRL-TDGSL--VAVKRLKEERTQ-----------------------GGELQFQTEVEMISMAV  343 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~-~~g~~--vAvK~l~~~~~~-----------------------~~~~~f~~E~~~l~~l~  343 (419)
                      |...+.||+|+||.||+|.. .+|+.  ||||.++.....                       .....+.+|+..|.+++
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            45568899999999999997 67888  999987432110                       00136889999999998


Q ss_pred             CCCCcceeEEEecCCceeEEeccCCC-C----ChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhh-hcccccee
Q 014778          344 HRNLLRLRGFCMTPTERLLVYPFMVN-G----SVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAK-YSCVSILL  417 (419)
Q Consensus       344 H~niv~l~g~~~~~~~~~lv~e~~~~-G----sL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH-~~~~p~Ii  417 (419)
                      |+++.....+..  +..++||||+.+ |    +|.++...          .++.++..++.|++.||+||| +.   +||
T Consensus       129 ~~~i~~p~~~~~--~~~~lVmE~~g~~g~~~~~L~~~~~~----------~~~~~~~~i~~qi~~~l~~lH~~~---giv  193 (258)
T 1zth_A          129 EAGVSVPQPYTY--MKNVLLMEFIGEDELPAPTLVELGRE----------LKELDVEGIFNDVVENVKRLYQEA---ELV  193 (258)
T ss_dssp             HTTCCCCCEEEE--ETTEEEEECCEETTEECCBHHHHGGG----------GGGSCHHHHHHHHHHHHHHHHHTS---CEE
T ss_pred             hCCCCCCeEEEc--CCCEEEEEecCCCCCccccHHHHhhc----------cChHHHHHHHHHHHHHHHHHHHHC---CEE
Confidence            886532222222  357899999952 5    56554321          224456788999999999999 88   999


Q ss_pred             cC
Q 014778          418 FC  419 (419)
Q Consensus       418 HR  419 (419)
                      ||
T Consensus       194 Hr  195 (258)
T 1zth_A          194 HA  195 (258)
T ss_dssp             CS
T ss_pred             eC
Confidence            98

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.31  E-value=1.4e-13  Score=133.97  Aligned_cols=134  Identities=16%  Similarity=0.244  Sum_probs=89.8

Q ss_pred             CCEEEEEcCCCCccc----cchhhhhCC---------CCCCEEEcccCccc-ccCC---ccccCCCcCcEEeccccccC-
Q 014778           69 NSVTRVDLGNANLSG----QLVSQLGQL---------TNLQYLELYSNNIS-GKVP---EELGNLTNLVSLDLYLNNLN-  130 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g----~~~~~~~~l---------~~L~~L~L~~N~l~-g~~p---~~~~~l~~L~~L~ls~N~l~-  130 (419)
                      .+++.|+|++|.+++    .++..+..+         ++|++|+|++|.++ +.+|   ..+..+++|++|+|++|+++ 
T Consensus       122 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  201 (386)
T 2ca6_A          122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP  201 (386)
T ss_dssp             TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH
T ss_pred             CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCH
Confidence            567777777777753    345556666         77777777777776 4444   45666777777777777776 


Q ss_pred             -C---CCCcccCCCCCCCEEEcccCcCc----ccCCccCcCCCCCcEEEcccCcCCCC----CCCC---CCccccccccc
Q 014778          131 -G---PIPTTLGKLSKLRFLRLNNNSLM----GEIPRSLTNVNSLQVLDLSNNKLTGD----IPTN---GSFSLFTPISF  195 (419)
Q Consensus       131 -g---~~p~~~~~l~~L~~l~l~~N~l~----g~~p~~l~~l~~L~~l~l~~N~l~g~----~p~~---~~~~~~~~~~~  195 (419)
                       |   .+|..+..+++|+.|+|++|.++    +.+|..+..+++|+.|++++|++++.    +|..   ..+..++.+++
T Consensus       202 ~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L  281 (386)
T 2ca6_A          202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL  281 (386)
T ss_dssp             HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEEC
T ss_pred             hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEEC
Confidence             2   34446677777777777777775    56677777777777777777777654    2221   23556677777


Q ss_pred             cCCCCCC
Q 014778          196 ANNQLNN  202 (419)
Q Consensus       196 ~~n~~~~  202 (419)
                      ++|.+..
T Consensus       282 ~~n~i~~  288 (386)
T 2ca6_A          282 QYNEIEL  288 (386)
T ss_dssp             CSSCCBH
T ss_pred             cCCcCCH
Confidence            7776653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.28  E-value=2.2e-13  Score=132.45  Aligned_cols=133  Identities=22%  Similarity=0.304  Sum_probs=84.9

Q ss_pred             CCEEEEEcCCCCccc----cchhhhhCCCCCCEEEcccCcccccCCccc----cCC---------CcCcEEeccccccC-
Q 014778           69 NSVTRVDLGNANLSG----QLVSQLGQLTNLQYLELYSNNISGKVPEEL----GNL---------TNLVSLDLYLNNLN-  130 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g----~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~----~~l---------~~L~~L~ls~N~l~-  130 (419)
                      .+++.|+|++|.+++    .+|..+..+++|++|+|++|.+++..+..+    ..+         ++|++|+|++|+++ 
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~  173 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  173 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence            457777777777776    466677777777777777777764333333    233         67777777777776 


Q ss_pred             CCCC---cccCCCCCCCEEEcccCcCc--c---cCCccCcCCCCCcEEEcccCcCC----CCCCC-CCCccccccccccC
Q 014778          131 GPIP---TTLGKLSKLRFLRLNNNSLM--G---EIPRSLTNVNSLQVLDLSNNKLT----GDIPT-NGSFSLFTPISFAN  197 (419)
Q Consensus       131 g~~p---~~~~~l~~L~~l~l~~N~l~--g---~~p~~l~~l~~L~~l~l~~N~l~----g~~p~-~~~~~~~~~~~~~~  197 (419)
                      +.+|   ..+..+++|+.|+|++|+++  |   .+|..+..+++|+.|++++|.++    +.+|. ...++.++.+++++
T Consensus       174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~  253 (386)
T 2ca6_A          174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  253 (386)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence            4444   35556677777777777776  2   34446677777777777777775    33432 23445666777777


Q ss_pred             CCCC
Q 014778          198 NQLN  201 (419)
Q Consensus       198 n~~~  201 (419)
                      |.+.
T Consensus       254 n~i~  257 (386)
T 2ca6_A          254 CLLS  257 (386)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            7654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.24  E-value=9.3e-13  Score=126.99  Aligned_cols=132  Identities=23%  Similarity=0.262  Sum_probs=80.0

Q ss_pred             CEEEEEcCCCCccccch----hhhhCCC-CCCEEEcccCcccccCCccccCC-----CcCcEEeccccccCCCCCcccC-
Q 014778           70 SVTRVDLGNANLSGQLV----SQLGQLT-NLQYLELYSNNISGKVPEELGNL-----TNLVSLDLYLNNLNGPIPTTLG-  138 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~----~~~~~l~-~L~~L~L~~N~l~g~~p~~~~~l-----~~L~~L~ls~N~l~g~~p~~~~-  138 (419)
                      +++.|||++|.+++..+    ..+..++ +|++|+|++|.+++..+..+..+     ++|++|+|++|++++..+..+. 
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~  102 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK  102 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence            36777777777776555    5566666 67777777777776656555554     6777777777777655555333 


Q ss_pred             ---CC-CCCCEEEcccCcCcccCCccC----cC-CCCCcEEEcccCcCCCCCCCC-----CCc-cccccccccCCCCC
Q 014778          139 ---KL-SKLRFLRLNNNSLMGEIPRSL----TN-VNSLQVLDLSNNKLTGDIPTN-----GSF-SLFTPISFANNQLN  201 (419)
Q Consensus       139 ---~l-~~L~~l~l~~N~l~g~~p~~l----~~-l~~L~~l~l~~N~l~g~~p~~-----~~~-~~~~~~~~~~n~~~  201 (419)
                         .+ ++|+.|+|++|++++..+..+    .. .++|++|++++|++++..+..     ..+ ..++.+++++|.+.
T Consensus       103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence               23 677777777777765544333    22 246777777777766432210     111 25666666666654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.24  E-value=1.8e-11  Score=125.84  Aligned_cols=75  Identities=28%  Similarity=0.321  Sum_probs=36.4

Q ss_pred             cCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCC-CCCCcccccccccc
Q 014778          118 NLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP-TNGSFSLFTPISFA  196 (419)
Q Consensus       118 ~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p-~~~~~~~~~~~~~~  196 (419)
                      +|+.|+|++|++++ +|   ..+++|+.|+|++|+++ .+|.   .+++|+.|++++|+++ .+| ....+.+++.++++
T Consensus       222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred             CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence            34444444444442 33   23344555555555554 3443   3445555555555555 333 23444555556666


Q ss_pred             CCCCC
Q 014778          197 NNQLN  201 (419)
Q Consensus       197 ~n~~~  201 (419)
                      +|++.
T Consensus       293 ~N~l~  297 (622)
T 3g06_A          293 GNPLS  297 (622)
T ss_dssp             SCCCC
T ss_pred             CCCCC
Confidence            66554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.22  E-value=1.1e-12  Score=126.62  Aligned_cols=130  Identities=20%  Similarity=0.193  Sum_probs=108.9

Q ss_pred             EEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCC----ccccCCC-cCcEEeccccccCCCCCcccCCC-----CC
Q 014778           73 RVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVP----EELGNLT-NLVSLDLYLNNLNGPIPTTLGKL-----SK  142 (419)
Q Consensus        73 ~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p----~~~~~l~-~L~~L~ls~N~l~g~~p~~~~~l-----~~  142 (419)
                      ..+|+.|+++|.+|..+...++|++|+|++|.+++..+    ..+..++ +|++|+|++|++++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            46899999999999988888889999999999997655    6788888 99999999999998888777765     99


Q ss_pred             CCEEEcccCcCcccCCccCc----CC-CCCcEEEcccCcCCCCCCCC-----CC-ccccccccccCCCCCC
Q 014778          143 LRFLRLNNNSLMGEIPRSLT----NV-NSLQVLDLSNNKLTGDIPTN-----GS-FSLFTPISFANNQLNN  202 (419)
Q Consensus       143 L~~l~l~~N~l~g~~p~~l~----~l-~~L~~l~l~~N~l~g~~p~~-----~~-~~~~~~~~~~~n~~~~  202 (419)
                      |+.|+|++|++++..+..+.    .+ ++|+.|++++|++++..+..     .. .+.++.+++++|.+..
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence            99999999999987776544    44 89999999999998765521     12 2578899999998763

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.15  E-value=1.4e-11  Score=118.39  Aligned_cols=114  Identities=11%  Similarity=0.014  Sum_probs=77.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccc-------------cCHHHH--------HHHHHHHhcCCCCC
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQ-------------GGELQF--------QTEVEMISMAVHRN  346 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~-------------~~~~~f--------~~E~~~l~~l~H~n  346 (419)
                      .-|.....||+|+||.||+|..++|+.||||.++.....             ......        .+|...|.++.+.+
T Consensus        95 ~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~g  174 (397)
T 4gyi_A           95 DVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEG  174 (397)
T ss_dssp             SCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            347778899999999999999889999999987532110             011122        34555666665444


Q ss_pred             CcceeEEEecCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          347 LLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       347 iv~l~g~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +....-+..  ...+|||||+++++|.++...             .+...++.|++.+|.|||+.   +||||
T Consensus       175 v~vp~p~~~--~~~~LVME~i~G~~L~~l~~~-------------~~~~~l~~qll~~l~~lH~~---gIVHr  229 (397)
T 4gyi_A          175 FPVPEPIAQ--SRHTIVMSLVDALPMRQVSSV-------------PDPASLYADLIALILRLAKH---GLIHG  229 (397)
T ss_dssp             CSCCCEEEE--ETTEEEEECCSCEEGGGCCCC-------------SCHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             CCCCeeeec--cCceEEEEecCCccHhhhccc-------------HHHHHHHHHHHHHHHHHHHC---CCcCC
Confidence            432222222  124799999999888664321             12345789999999999998   99998

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.15  E-value=7.5e-11  Score=113.04  Aligned_cols=107  Identities=18%  Similarity=0.191  Sum_probs=91.5

Q ss_pred             EEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCC-ccccCCCcCcEEeccccccCCCCCc-ccCCCCCCCE-EEc
Q 014778           72 TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVP-EELGNLTNLVSLDLYLNNLNGPIPT-TLGKLSKLRF-LRL  148 (419)
Q Consensus        72 ~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~~p~-~~~~l~~L~~-l~l  148 (419)
                      ++++.++++|+ .+|..+  .+++++|+|++|+|+ .+| ..|.++++|++|+|++|++.+.+|. .|.++++|.. +++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            35789999998 577766  368999999999999 555 5789999999999999999877875 5688888775 677


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP  182 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p  182 (419)
                      ++|+++...|..|..+++|++|++++|++++..+
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~  121 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD  121 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCc
Confidence            8899998788899999999999999999987655

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.09  E-value=2.4e-12  Score=127.85  Aligned_cols=133  Identities=21%  Similarity=0.186  Sum_probs=93.0

Q ss_pred             CCEEEEEcCCCCccccch----hh-hhCCCCCCEEEcccCccccc----CCccccCCCcCcEEeccccccCCCCCcccC-
Q 014778           69 NSVTRVDLGNANLSGQLV----SQ-LGQLTNLQYLELYSNNISGK----VPEELGNLTNLVSLDLYLNNLNGPIPTTLG-  138 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~----~~-~~~l~~L~~L~L~~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~-  138 (419)
                      .+++.|+|++|.+++.-.    +. +..+++|++|+|++|.+++.    +|..+..+++|++|++++|.+++..+..+. 
T Consensus       227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  306 (461)
T 1z7x_W          227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE  306 (461)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence            568888888888876432    22 23578888888888888854    677777788888888888888654333332 


Q ss_pred             ----CCCCCCEEEcccCcCccc----CCccCcCCCCCcEEEcccCcCCCCCCC-C-----CCccccccccccCCCCC
Q 014778          139 ----KLSKLRFLRLNNNSLMGE----IPRSLTNVNSLQVLDLSNNKLTGDIPT-N-----GSFSLFTPISFANNQLN  201 (419)
Q Consensus       139 ----~l~~L~~l~l~~N~l~g~----~p~~l~~l~~L~~l~l~~N~l~g~~p~-~-----~~~~~~~~~~~~~n~~~  201 (419)
                          ..++|+.|+|++|.+++.    +|..+..+++|+.|++++|++++..+. .     ...+.++.+++++|.+.
T Consensus       307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence                236888888888888765    566677778888888888887654321 0     11346777788887765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.97  E-value=3.2e-11  Score=119.73  Aligned_cols=135  Identities=19%  Similarity=0.187  Sum_probs=108.3

Q ss_pred             CCCEEEEEcCCCCcccc----chhhhhCCCCCCEEEcccCcccccCCccccCC-----CcCcEEeccccccCCC----CC
Q 014778           68 ENSVTRVDLGNANLSGQ----LVSQLGQLTNLQYLELYSNNISGKVPEELGNL-----TNLVSLDLYLNNLNGP----IP  134 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~----~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l-----~~L~~L~ls~N~l~g~----~p  134 (419)
                      ..+++.|+|++|.+++.    ++..+..+++|++|+|++|.+++..+..+...     ++|+.|++++|.+++.    +|
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence            45799999999999975    78888889999999999999986554444432     6899999999999865    57


Q ss_pred             cccCCCCCCCEEEcccCcCcccCCccCcC-----CCCCcEEEcccCcCCC----CCCC-CCCccccccccccCCCCCC
Q 014778          135 TTLGKLSKLRFLRLNNNSLMGEIPRSLTN-----VNSLQVLDLSNNKLTG----DIPT-NGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       135 ~~~~~l~~L~~l~l~~N~l~g~~p~~l~~-----l~~L~~l~l~~N~l~g----~~p~-~~~~~~~~~~~~~~n~~~~  202 (419)
                      ..+..+++|+.|+|++|.+++..+..+..     .++|+.|++++|++++    .+|. ...++.++.+++++|++..
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            77788899999999999998765554443     6799999999999985    4553 2345678889999998763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.89  E-value=2.9e-10  Score=109.84  Aligned_cols=133  Identities=18%  Similarity=0.203  Sum_probs=100.3

Q ss_pred             CCEEEEEcCCCCccccchhhhh-CCCCCCEEEcccCcccccCCccc-----cCCCcCcEEeccccccCC----CCCcccC
Q 014778           69 NSVTRVDLGNANLSGQLVSQLG-QLTNLQYLELYSNNISGKVPEEL-----GNLTNLVSLDLYLNNLNG----PIPTTLG  138 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~-~l~~L~~L~L~~N~l~g~~p~~~-----~~l~~L~~L~ls~N~l~g----~~p~~~~  138 (419)
                      ..++.|+|++|.++..-...+. .+++|++|+|++|.|+..-...+     ...++|+.|+|++|.++.    .++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            5799999999999865444433 46689999999999985433333     246789999999999974    2555567


Q ss_pred             CCCCCCEEEcccCcCccc----CCccCcCCCCCcEEEcccCcCCCCCC----C-CCCccccccccccCCCCC
Q 014778          139 KLSKLRFLRLNNNSLMGE----IPRSLTNVNSLQVLDLSNNKLTGDIP----T-NGSFSLFTPISFANNQLN  201 (419)
Q Consensus       139 ~l~~L~~l~l~~N~l~g~----~p~~l~~l~~L~~l~l~~N~l~g~~p----~-~~~~~~~~~~~~~~n~~~  201 (419)
                      .+++|++|+|++|.++..    ++..+...++|+.|++++|.++..-.    . ......++.+++++|.+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            789999999999999742    45667788899999999999875311    0 112356788999999876

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.89  E-value=5.5e-11  Score=114.89  Aligned_cols=133  Identities=19%  Similarity=0.192  Sum_probs=88.6

Q ss_pred             CCEEEEEcCCCCccccchhhhhCC-----CCCCEEEcccCcccccCCccc-cCCCcCcEEeccccccCCCCCccc-----
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQL-----TNLQYLELYSNNISGKVPEEL-GNLTNLVSLDLYLNNLNGPIPTTL-----  137 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l-----~~L~~L~L~~N~l~g~~p~~~-~~l~~L~~L~ls~N~l~g~~p~~~-----  137 (419)
                      ..++.|+|++|.++......+..+     .+|++|+|++|.++..-...+ ..+++|+.|+|++|+++..-...+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            467888888888876544444433     688888888888865433233 346678888888888864433333     


Q ss_pred             CCCCCCCEEEcccCcCcc----cCCccCcCCCCCcEEEcccCcCCCCC----C-CCCCccccccccccCCCCC
Q 014778          138 GKLSKLRFLRLNNNSLMG----EIPRSLTNVNSLQVLDLSNNKLTGDI----P-TNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       138 ~~l~~L~~l~l~~N~l~g----~~p~~l~~l~~L~~l~l~~N~l~g~~----p-~~~~~~~~~~~~~~~n~~~  201 (419)
                      ...++|+.|+|++|.++.    .++..+...++|++||+++|+++..-    + .....+.++.+++++|.+.
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            345778888888888864    24455567788888888888876421    1 1122346777888888765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.87  E-value=6.6e-11  Score=108.22  Aligned_cols=68  Identities=31%  Similarity=0.440  Sum_probs=54.0

Q ss_pred             cCCCcCcEEeccccccCC--CCCcccCCCCCCCEEEcccCcCcccCCccCcCCC--CCcEEEcccCcCCCCCCC
Q 014778          114 GNLTNLVSLDLYLNNLNG--PIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVN--SLQVLDLSNNKLTGDIPT  183 (419)
Q Consensus       114 ~~l~~L~~L~ls~N~l~g--~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~--~L~~l~l~~N~l~g~~p~  183 (419)
                      .++++|+.|+|++|++++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|++|++++|++++.+|.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~  238 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD  238 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence            467889999999999987  5667777889999999999999864  2344444  899999999999887763

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.84  E-value=7.4e-10  Score=101.26  Aligned_cols=81  Identities=27%  Similarity=0.279  Sum_probs=68.5

Q ss_pred             hhCCCCCCEEEcccCcccc--cCCccccCCCcCcEEeccccccCCCCCcccCCCC--CCCEEEcccCcCcccCCc-----
Q 014778           89 LGQLTNLQYLELYSNNISG--KVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLS--KLRFLRLNNNSLMGEIPR-----  159 (419)
Q Consensus        89 ~~~l~~L~~L~L~~N~l~g--~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~--~L~~l~l~~N~l~g~~p~-----  159 (419)
                      ..++++|+.|+|++|.|++  .+|..+..+++|+.|+|++|++++.  ..+..+.  +|+.|+|++|.+.+.+|.     
T Consensus       166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            3578999999999999998  6778888999999999999999864  3455555  999999999999988873     


Q ss_pred             --cCcCCCCCcEEE
Q 014778          160 --SLTNVNSLQVLD  171 (419)
Q Consensus       160 --~l~~l~~L~~l~  171 (419)
                        .+..+++|+.||
T Consensus       244 ~~il~~~P~L~~LD  257 (267)
T 3rw6_A          244 SAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHCTTCCEES
T ss_pred             HHHHHHCcccCeEC
Confidence              367789998886

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.67  E-value=3.1e-09  Score=92.13  Aligned_cols=111  Identities=19%  Similarity=0.213  Sum_probs=87.0

Q ss_pred             CCCEEEEEcCCC-Ccccc----chhhhhCCCCCCEEEcccCccccc----CCccccCCCcCcEEeccccccCCC----CC
Q 014778           68 ENSVTRVDLGNA-NLSGQ----LVSQLGQLTNLQYLELYSNNISGK----VPEELGNLTNLVSLDLYLNNLNGP----IP  134 (419)
Q Consensus        68 ~~~~~~l~L~~~-~l~g~----~~~~~~~l~~L~~L~L~~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~p  134 (419)
                      ...++.|+|++| .++..    +...+...++|++|+|++|.|+..    +...+...++|++|+|++|.++..    +.
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~  114 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV  114 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence            457999999999 88753    556677788999999999999742    445566668899999999999743    45


Q ss_pred             cccCCCCCCCEEEc--ccCcCccc----CCccCcCCCCCcEEEcccCcCC
Q 014778          135 TTLGKLSKLRFLRL--NNNSLMGE----IPRSLTNVNSLQVLDLSNNKLT  178 (419)
Q Consensus       135 ~~~~~l~~L~~l~l--~~N~l~g~----~p~~l~~l~~L~~l~l~~N~l~  178 (419)
                      ..+...++|+.|+|  ++|.++..    +...+...++|+.|++++|.+.
T Consensus       115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            66777889999999  88998743    3445566788999999999774

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.65  E-value=8.9e-09  Score=105.36  Aligned_cols=102  Identities=14%  Similarity=0.203  Sum_probs=55.7

Q ss_pred             EEEEEcCCCC-ccc-cchhhhhCCCCCCEEEcccCccccc----CCccccCCCcCcEEeccccccC----CCCCcccCCC
Q 014778           71 VTRVDLGNAN-LSG-QLVSQLGQLTNLQYLELYSNNISGK----VPEELGNLTNLVSLDLYLNNLN----GPIPTTLGKL  140 (419)
Q Consensus        71 ~~~l~L~~~~-l~g-~~~~~~~~l~~L~~L~L~~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~----g~~p~~~~~l  140 (419)
                      ++.|+|++|. ++. .++.....+++|++|+|++|.+++.    ++..+..+++|+.|++++|.++    +.++..+.++
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            6666666655 211 1222334566666666666666544    3333445566666666666665    2333344456


Q ss_pred             CCCCEEEcccCcCcccCCccCcCCCCCcEEEcc
Q 014778          141 SKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLS  173 (419)
Q Consensus       141 ~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~  173 (419)
                      ++|+.|+|++|.+.+ +|..+.++++|+.|+++
T Consensus       220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEEC
T ss_pred             CCCcEEeccCccHHH-HHHHHhhhhHHHhhccc
Confidence            666666666666553 44455555555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.64  E-value=7.3e-10  Score=113.49  Aligned_cols=132  Identities=14%  Similarity=0.173  Sum_probs=81.0

Q ss_pred             CEEEEEcCCCCccccchhhhhC-CCCCCEEEcc----cCccccc-----CCccccCCCcCcEEecccc--ccCCCCCccc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQ-LTNLQYLELY----SNNISGK-----VPEELGNLTNLVSLDLYLN--NLNGPIPTTL  137 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~-l~~L~~L~L~----~N~l~g~-----~p~~~~~l~~L~~L~ls~N--~l~g~~p~~~  137 (419)
                      +++.|+|+.|++++..+..++. +++|+.|+|+    .|.+++.     ++..+..+++|+.|+++++  .+++..+..+
T Consensus       379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~  458 (592)
T 3ogk_B          379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI  458 (592)
T ss_dssp             TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH
T ss_pred             cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHH
Confidence            5666666666666666666654 6677777774    5566542     3333555667777777632  3554444444


Q ss_pred             C-CCCCCCEEEcccCcCcc-cCCccCcCCCCCcEEEcccCcCCCC-CCC-CCCccccccccccCCCCC
Q 014778          138 G-KLSKLRFLRLNNNSLMG-EIPRSLTNVNSLQVLDLSNNKLTGD-IPT-NGSFSLFTPISFANNQLN  201 (419)
Q Consensus       138 ~-~l~~L~~l~l~~N~l~g-~~p~~l~~l~~L~~l~l~~N~l~g~-~p~-~~~~~~~~~~~~~~n~~~  201 (419)
                      + .+++|+.|+|++|++++ .++..+..+++|+.|++++|++++. ++. ...+.+++.+++++|+++
T Consensus       459 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          459 GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            3 36777777777777765 3455556777788888888777543 221 123456677777777754

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.42  E-value=4.9e-07  Score=85.52  Aligned_cols=87  Identities=17%  Similarity=0.154  Sum_probs=56.6

Q ss_pred             CCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCC-EEEcccCcCcccCCccCcCCCCCcEE
Q 014778           92 LTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLR-FLRLNNNSLMGEIPRSLTNVNSLQVL  170 (419)
Q Consensus        92 l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~-~l~l~~N~l~g~~p~~l~~l~~L~~l  170 (419)
                      +++|+.|+|++|+++..-+..|.++++|+.|+|++| ++..-+..|.++++|+ .+++.+ .++..-+..|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            667777777777777333345677777777777776 5533334566777777 777776 5553444667777777777


Q ss_pred             EcccCcCCCC
Q 014778          171 DLSNNKLTGD  180 (419)
Q Consensus       171 ~l~~N~l~g~  180 (419)
                      +++.|+++..
T Consensus       303 ~l~~n~i~~I  312 (329)
T 3sb4_A          303 LATGDKITTL  312 (329)
T ss_dssp             EECSSCCCEE
T ss_pred             EeCCCccCcc
Confidence            7777766543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.39  E-value=1.1e-08  Score=104.72  Aligned_cols=34  Identities=12%  Similarity=0.237  Sum_probs=17.4

Q ss_pred             CCCCCEEEcccCcccccCCcccc-CCCcCcEEecc
Q 014778           92 LTNLQYLELYSNNISGKVPEELG-NLTNLVSLDLY  125 (419)
Q Consensus        92 l~~L~~L~L~~N~l~g~~p~~~~-~l~~L~~L~ls  125 (419)
                      +++|++|+++.|.+++..+..+. .+++|+.|+++
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~  405 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC  405 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence            55555555555555544333333 34555555555

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.39  E-value=8.9e-07  Score=83.68  Aligned_cols=129  Identities=21%  Similarity=0.262  Sum_probs=79.8

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccC---------------------------------
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGN---------------------------------  115 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~---------------------------------  115 (419)
                      .+++.|+|++ +++..-+..|.++++|+.|+|++|.+...-+..|..                                 
T Consensus       101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~  179 (329)
T 3sb4_A          101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE  179 (329)
T ss_dssp             TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred             CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence            4688888888 887666678889999999999988764222222222                                 


Q ss_pred             ---------------------------------------------CCcCcEEeccccccCCCCCc-ccCCCCCCCEEEcc
Q 014778          116 ---------------------------------------------LTNLVSLDLYLNNLNGPIPT-TLGKLSKLRFLRLN  149 (419)
Q Consensus       116 ---------------------------------------------l~~L~~L~ls~N~l~g~~p~-~~~~l~~L~~l~l~  149 (419)
                                                                   +++|+.|+|++|+++ .||. .|.++++|+.++|.
T Consensus       180 ~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          180 TTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECC
T ss_pred             eeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECC
Confidence                                                         556777777777666 3443 46667777777777


Q ss_pred             cCcCcccCCccCcCCCCCc-EEEcccCcCCCCCC-CCCCccccccccccCCCCC
Q 014778          150 NNSLMGEIPRSLTNVNSLQ-VLDLSNNKLTGDIP-TNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       150 ~N~l~g~~p~~l~~l~~L~-~l~l~~N~l~g~~p-~~~~~~~~~~~~~~~n~~~  201 (419)
                      +| ++..-+..|.++++|+ .+++.+ +++...+ .+..+.+++.+.+.+|.+.
T Consensus       259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred             cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence            66 5433344566777777 777666 3432211 2344556666666665544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.26  E-value=7.3e-08  Score=98.53  Aligned_cols=131  Identities=10%  Similarity=0.100  Sum_probs=100.8

Q ss_pred             CCEEEEEcCCCCccccchhhhh-CCCCCCEEEcc--c----Ccccc-----cCCccccCCCcCcEEeccccccCCCCCcc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLG-QLTNLQYLELY--S----NNISG-----KVPEELGNLTNLVSLDLYLNNLNGPIPTT  136 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~-~l~~L~~L~L~--~----N~l~g-----~~p~~~~~l~~L~~L~ls~N~l~g~~p~~  136 (419)
                      .+++.|+++.|++++.....+. .+++|+.|+|+  +    |.+++     .++..+..+++|+.|+|++ .+++..+..
T Consensus       372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~  450 (594)
T 2p1m_B          372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY  450 (594)
T ss_dssp             TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred             hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence            4688899999999987777776 58999999999  4    56662     1222367789999999987 677666666


Q ss_pred             cCC-CCCCCEEEcccCcCcccCCccC-cCCCCCcEEEcccCcCCCCCCC--CCCccccccccccCCCC
Q 014778          137 LGK-LSKLRFLRLNNNSLMGEIPRSL-TNVNSLQVLDLSNNKLTGDIPT--NGSFSLFTPISFANNQL  200 (419)
Q Consensus       137 ~~~-l~~L~~l~l~~N~l~g~~p~~l-~~l~~L~~l~l~~N~l~g~~p~--~~~~~~~~~~~~~~n~~  200 (419)
                      ++. +++|+.|+|++|.+++..+..+ ..+++|+.|++++|++++..+.  ...+.+++.+++++|+.
T Consensus       451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            665 8999999999999987655555 6789999999999999644331  23467888899998865

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.18  E-value=3.1e-07  Score=79.39  Aligned_cols=98  Identities=20%  Similarity=0.224  Sum_probs=78.4

Q ss_pred             cccchhhhhCCCCCCEEEcccC-ccccc----CCccccCCCcCcEEeccccccCCC----CCcccCCCCCCCEEEcccCc
Q 014778           82 SGQLVSQLGQLTNLQYLELYSN-NISGK----VPEELGNLTNLVSLDLYLNNLNGP----IPTTLGKLSKLRFLRLNNNS  152 (419)
Q Consensus        82 ~g~~~~~~~~l~~L~~L~L~~N-~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~l~l~~N~  152 (419)
                      ...+...+...++|++|+|++| .++..    +...+...++|++|+|++|+++..    +...+...++|++|+|++|.
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            3456667888999999999999 88742    455667788999999999999742    34455566899999999999


Q ss_pred             Cccc----CCccCcCCCCCcEEEc--ccCcCCC
Q 014778          153 LMGE----IPRSLTNVNSLQVLDL--SNNKLTG  179 (419)
Q Consensus       153 l~g~----~p~~l~~l~~L~~l~l--~~N~l~g  179 (419)
                      ++..    +...+...++|+.|++  ++|.++.
T Consensus       105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence            9753    5667888899999999  8898864

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.16  E-value=3.5e-07  Score=87.67  Aligned_cols=130  Identities=19%  Similarity=0.297  Sum_probs=86.4

Q ss_pred             CCCEEEEEcCCCC-ccccchhhhhCCCCCCEEEcccCcccccCCcccc--CCCcCcEEeccc--cccCCC-----CCccc
Q 014778           68 ENSVTRVDLGNAN-LSGQLVSQLGQLTNLQYLELYSNNISGKVPEELG--NLTNLVSLDLYL--NNLNGP-----IPTTL  137 (419)
Q Consensus        68 ~~~~~~l~L~~~~-l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~--~l~~L~~L~ls~--N~l~g~-----~p~~~  137 (419)
                      .++++.|+|++|. +  .+++ + .+++|+.|+|..|.++......+.  .+++|+.|+|+.  |...|.     +...+
T Consensus       171 ~P~L~~L~L~g~~~l--~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l  246 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNL--SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF  246 (362)
T ss_dssp             CTTCCEEEEECCBTC--BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred             CCCCcEEEEeCCCCc--eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence            4679999998873 2  2333 3 378999999998887654334444  688999998863  332222     11122


Q ss_pred             --CCCCCCCEEEcccCcCcccCCccC---cCCCCCcEEEcccCcCCCC----CCCC-CCccccccccccCCCCC
Q 014778          138 --GKLSKLRFLRLNNNSLMGEIPRSL---TNVNSLQVLDLSNNKLTGD----IPTN-GSFSLFTPISFANNQLN  201 (419)
Q Consensus       138 --~~l~~L~~l~l~~N~l~g~~p~~l---~~l~~L~~l~l~~N~l~g~----~p~~-~~~~~~~~~~~~~n~~~  201 (419)
                        ..+++|++|+|++|.+.+..+..+   ..+++|+.|+|+.|.+++.    ++.. ..+..++.+++++|.+.
T Consensus       247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence              357899999999998875443333   2577899999999988763    2222 34567788888887654

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.12  E-value=1.2e-05  Score=73.05  Aligned_cols=113  Identities=9%  Similarity=-0.043  Sum_probs=85.7

Q ss_pred             HHHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCC-CCCCcceeEEEecCCceeE
Q 014778          284 QVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-HRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       284 ~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~l  362 (419)
                      ....++|......+.|+.+.||+.... ++.+++|....... .....+.+|.+++..+. |..+.++++++...+..++
T Consensus        10 ~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~-~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~l   87 (263)
T 3tm0_A           10 KKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYK-GTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNL   87 (263)
T ss_dssp             HHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGT-TSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEE
T ss_pred             HHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccC-CCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEE
Confidence            334456776677888888999999854 67899999854321 22336889999998874 6778899999988888999


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhh
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKY  410 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~  410 (419)
                      ||||+++.+|.+.+...            .+...++.++++++..||+
T Consensus        88 v~e~i~G~~l~~~~~~~------------~~~~~~~~~l~~~l~~LH~  123 (263)
T 3tm0_A           88 LMSEADGVLCSEEYEDE------------QSPEKIIELYAECIRLFHS  123 (263)
T ss_dssp             EEECCSSEEHHHHCCTT------------TCHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCeehhhccCCc------------ccHHHHHHHHHHHHHHHhC
Confidence            99999999988763211            1123578899999999997

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.03  E-value=7.5e-07  Score=85.32  Aligned_cols=131  Identities=14%  Similarity=0.161  Sum_probs=90.3

Q ss_pred             CCEEEEEcCCCCc---------cccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccC-
Q 014778           69 NSVTRVDLGNANL---------SGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLG-  138 (419)
Q Consensus        69 ~~~~~l~L~~~~l---------~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~-  138 (419)
                      .+++.|.+.++..         .+.+...+..+++|+.|+|++|.-. .+|+ + .+++|+.|+|..|.++......+. 
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~  215 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILG  215 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHH
Confidence            5788888866543         2346677788999999999988411 3554 4 389999999999887644333443 


Q ss_pred             -CCCCCCEEEccc--CcCccc--C---CccC--cCCCCCcEEEcccCcCCCCCC----CCCCccccccccccCCCCCC
Q 014778          139 -KLSKLRFLRLNN--NSLMGE--I---PRSL--TNVNSLQVLDLSNNKLTGDIP----TNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       139 -~l~~L~~l~l~~--N~l~g~--~---p~~l--~~l~~L~~l~l~~N~l~g~~p----~~~~~~~~~~~~~~~n~~~~  202 (419)
                       .+++|+.|+|+.  |...|.  +   ...+  ..+++|+.|++.+|.+++..+    ....++.++.++++.|.+..
T Consensus       216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence             789999999863  332222  1   1122  357899999999999875332    12346788999999887653

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=97.77  E-value=2.5e-05  Score=70.55  Aligned_cols=96  Identities=8%  Similarity=-0.047  Sum_probs=71.5

Q ss_pred             CcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCC--CcceeEEEecCCceeEEeccCCCCChhh
Q 014778          297 GRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRN--LLRLRGFCMTPTERLLVYPFMVNGSVAS  374 (419)
Q Consensus       297 G~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~n--iv~l~g~~~~~~~~~lv~e~~~~GsL~~  374 (419)
                      +.|..+.||+....+|..+++|.....    ....+.+|++++..+++.+  +.+++++....+..++||||+++.++. 
T Consensus        29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~----~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~-  103 (264)
T 1nd4_A           29 IGCSDAAVFRLSAQGRPVLFVKTDLSG----ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL-  103 (264)
T ss_dssp             CTTSSCEEEEEECTTSCCEEEEEECSC----TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETT-
T ss_pred             cCCCCceEEEEecCCCCeEEEEeCCcc----cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcccC-
Confidence            455669999998777888999997532    1235788999988886555  456888888877889999999998874 


Q ss_pred             hhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 014778          375 CLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYS  411 (419)
Q Consensus       375 ~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~  411 (419)
                       ....             +...++.++++.+..||+.
T Consensus       104 -~~~~-------------~~~~~~~~l~~~l~~lh~~  126 (264)
T 1nd4_A          104 -SSHL-------------APAEKVSIMADAMRRLHTL  126 (264)
T ss_dssp             -TSCC-------------CHHHHHHHHHHHHHHHTTS
T ss_pred             -cCcC-------------CHhHHHHHHHHHHHHHhCC
Confidence             2211             0124688999999999964

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=97.76  E-value=6.4e-05  Score=71.70  Aligned_cols=109  Identities=6%  Similarity=0.019  Sum_probs=77.2

Q ss_pred             CCeeCcCCceEEEEEEeCCCCEEEEEEcc--ccccccCHHHHHHHHHHHhcCC--CCCCcceeEEEecC---CceeEEec
Q 014778          293 RNILGRGGFGKVYKGRLTDGSLVAVKRLK--EERTQGGELQFQTEVEMISMAV--HRNLLRLRGFCMTP---TERLLVYP  365 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~--~~~~~~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~---~~~~lv~e  365 (419)
                      .+.++.|.++.||+....+ ..+++|+..  ..........+.+|..++..++  +..+.++++++.+.   +..++|||
T Consensus        43 ~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme  121 (359)
T 3dxp_A           43 VEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME  121 (359)
T ss_dssp             EEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred             EEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence            4678999999999998754 578888875  3322222346888999998887  45578889988776   44799999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYS  411 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~  411 (419)
                      |+++..+.+....         .++..+...++.++++.|..||+.
T Consensus       122 ~v~G~~l~~~~~~---------~l~~~~~~~~~~~l~~~La~LH~~  158 (359)
T 3dxp_A          122 FVSGRVLWDQSLP---------GMSPAERTAIYDEMNRVIAAMHTV  158 (359)
T ss_dssp             CCCCBCCCCTTCT---------TCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ecCCeecCCCccc---------cCCHHHHHHHHHHHHHHHHHHhCC
Confidence            9998777431111         355667778899999999999974

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.64  E-value=1.6e-05  Score=67.54  Aligned_cols=83  Identities=13%  Similarity=0.241  Sum_probs=48.4

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCc-ccccCCccccCC----CcCcEEeccccc-cCCCCCcccCCCCCC
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNN-ISGKVPEELGNL----TNLVSLDLYLNN-LNGPIPTTLGKLSKL  143 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~-l~g~~p~~~~~l----~~L~~L~ls~N~-l~g~~p~~~~~l~~L  143 (419)
                      .++.|||+++.++..--..+.++++|++|+|+++. ++..-=..+..+    ++|++|+|+++. +|..=-..+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            57777777777765444556677777777777763 554322233332    356677776653 443222334556666


Q ss_pred             CEEEcccCc
Q 014778          144 RFLRLNNNS  152 (419)
Q Consensus       144 ~~l~l~~N~  152 (419)
                      +.|+|+++.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            666666653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.59  E-value=1.1e-05  Score=68.39  Aligned_cols=84  Identities=13%  Similarity=0.107  Sum_probs=64.7

Q ss_pred             CCCCEEEcccCcccccCCccccCCCcCcEEeccccc-cCCCCCcccCCC----CCCCEEEcccCc-CcccCCccCcCCCC
Q 014778           93 TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN-LNGPIPTTLGKL----SKLRFLRLNNNS-LMGEIPRSLTNVNS  166 (419)
Q Consensus        93 ~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~l----~~L~~l~l~~N~-l~g~~p~~l~~l~~  166 (419)
                      ..|++|||+++.++..--..+..+++|+.|+|+++. ++..--..+..+    ++|+.|+|+++. ++..--..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            479999999999986544567899999999999985 664333345554    479999999974 76533345788999


Q ss_pred             CcEEEcccCc
Q 014778          167 LQVLDLSNNK  176 (419)
Q Consensus       167 L~~l~l~~N~  176 (419)
                      |+.|+++++.
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            9999999874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.57  E-value=0.00033  Score=67.92  Aligned_cols=124  Identities=15%  Similarity=0.135  Sum_probs=65.5

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN  149 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~  149 (419)
                      +++.++|++ +++..-+..|.++.+|+.++|++|.++ .+|.....+.+|+.+.|..| ++..-...|.++++|+.+++.
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence            356666664 555444556777777777777777776 45544444566777766643 442223445566667777666


Q ss_pred             cCcCcccCCccCcCCCCCcEEEcccCcCCCCCC--CCCCccccccccccCCCC
Q 014778          150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP--TNGSFSLFTPISFANNQL  200 (419)
Q Consensus       150 ~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p--~~~~~~~~~~~~~~~n~~  200 (419)
                      .| ++..-...|.+ .+|+.+++. |.++. ++  .+..+.+++.+.+.+|..
T Consensus       235 ~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~-I~~~aF~~c~~L~~l~l~~~~~  283 (401)
T 4fdw_A          235 EN-VSTIGQEAFRE-SGITTVKLP-NGVTN-IASRAFYYCPELAEVTTYGSTF  283 (401)
T ss_dssp             TT-CCEECTTTTTT-CCCSEEEEE-TTCCE-ECTTTTTTCTTCCEEEEESSCC
T ss_pred             CC-ccCcccccccc-CCccEEEeC-CCccE-EChhHhhCCCCCCEEEeCCccc
Confidence            54 33122223333 456666553 22321 22  223344555555555543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.50  E-value=0.00025  Score=68.70  Aligned_cols=124  Identities=13%  Similarity=0.124  Sum_probs=87.6

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccC-----CCCCcccCCCCCCC
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLN-----GPIPTTLGKLSKLR  144 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~-----g~~p~~~~~l~~L~  144 (419)
                      +++.|+|+++ ++..-...|.+ .+|+.+.| .|.++..-+..|.+|++|+.+++.+|.+.     ..-+..|.++++|+
T Consensus       227 ~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~  303 (401)
T 4fdw_A          227 QLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLA  303 (401)
T ss_dssp             TCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCC
T ss_pred             CCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCC
Confidence            5778888763 55444556766 78999999 45566444678889999999999988765     12335678899999


Q ss_pred             EEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCC--CCCCccccccccccCCCC
Q 014778          145 FLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP--TNGSFSLFTPISFANNQL  200 (419)
Q Consensus       145 ~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p--~~~~~~~~~~~~~~~n~~  200 (419)
                      .++|.+ .++-.-...|.++++|+.+++..| ++. |+  .+..+ +++.+.+.+|..
T Consensus       304 ~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~-I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          304 RFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ-INFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             EECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE-ECTTSSSSS-CCCEEEECCSSC
T ss_pred             eEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE-EcHHhCCCC-CCCEEEEcCCCC
Confidence            999984 466444567888999999999665 432 22  23334 677777877754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.40  E-value=5e-05  Score=65.65  Aligned_cols=108  Identities=16%  Similarity=0.180  Sum_probs=62.3

Q ss_pred             CCCEEEEEcCCC-Cccc----cchhhhhCCCCCCEEEcccCccccc----CCccccCCCcCcEEeccccccCCC----CC
Q 014778           68 ENSVTRVDLGNA-NLSG----QLVSQLGQLTNLQYLELYSNNISGK----VPEELGNLTNLVSLDLYLNNLNGP----IP  134 (419)
Q Consensus        68 ~~~~~~l~L~~~-~l~g----~~~~~~~~l~~L~~L~L~~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~p  134 (419)
                      +..++.|+|++| ++..    .+...+..=+.|+.|+|++|.|...    +-+.+..=+.|+.|+|++|.++..    +-
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            456778888875 6653    2455666667788888888887633    223333445677777777777632    22


Q ss_pred             cccCCCCCCCEEEcccC---cCccc----CCccCcCCCCCcEEEcccC
Q 014778          135 TTLGKLSKLRFLRLNNN---SLMGE----IPRSLTNVNSLQVLDLSNN  175 (419)
Q Consensus       135 ~~~~~l~~L~~l~l~~N---~l~g~----~p~~l~~l~~L~~l~l~~N  175 (419)
                      ..+..-+.|+.|+|++|   .+...    +-..+..=++|+.|+++.|
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            33444456777777654   22211    2223334456666666544

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.21  E-value=0.00063  Score=54.71  Aligned_cols=37  Identities=24%  Similarity=0.240  Sum_probs=18.7

Q ss_pred             CCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCC
Q 014778          142 KLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT  178 (419)
Q Consensus       142 ~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~  178 (419)
                      +|+.|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            3555555555555333334455555555555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.13  E-value=0.00077  Score=54.21  Aligned_cols=55  Identities=27%  Similarity=0.291  Sum_probs=24.4

Q ss_pred             EEEcCCCCcc-ccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEecccccc
Q 014778           73 RVDLGNANLS-GQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL  129 (419)
Q Consensus        73 ~l~L~~~~l~-g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l  129 (419)
                      .++.++++|+ ..+|..+.  .+|+.|+|++|+|+..-+..|..+++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555566654 23343221  1355555555555522222334444444444444443

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.26  E-value=0.0014  Score=56.55  Aligned_cols=91  Identities=18%  Similarity=0.191  Sum_probs=65.8

Q ss_pred             chhhhhCCCCCCEEEcccC-ccccc----CCccccCCCcCcEEeccccccCCC----CCcccCCCCCCCEEEcccCcCcc
Q 014778           85 LVSQLGQLTNLQYLELYSN-NISGK----VPEELGNLTNLVSLDLYLNNLNGP----IPTTLGKLSKLRFLRLNNNSLMG  155 (419)
Q Consensus        85 ~~~~~~~l~~L~~L~L~~N-~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~l~l~~N~l~g  155 (419)
                      +..-+.+-+.|++|+|++| .|...    +-+.+..-+.|+.|+|++|+++..    |-..+..-+.|+.|+|+.|+++.
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence            4444556688999999986 77532    444566667899999999999733    33344455889999999999974


Q ss_pred             c----CCccCcCCCCCcEEEcccC
Q 014778          156 E----IPRSLTNVNSLQVLDLSNN  175 (419)
Q Consensus       156 ~----~p~~l~~l~~L~~l~l~~N  175 (419)
                      .    +-..+..=+.|+.|+|++|
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHHHhhCCceeEEECCCC
Confidence            3    3344556677999999865

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=96.02  E-value=0.019  Score=53.21  Aligned_cols=102  Identities=10%  Similarity=-0.016  Sum_probs=73.6

Q ss_pred             CeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCC---CCcceeEEEe-cCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHR---NLLRLRGFCM-TPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~---niv~l~g~~~-~~~~~~lv~e~~~~  369 (419)
                      +.++.|....||+.    |..+++|.-...   .....+.+|.++|..+.+.   .+.+.++++. ..+..++||||+++
T Consensus        25 ~~l~~G~~n~v~~v----g~~~VlR~~~~~---~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G   97 (306)
T 3tdw_A           25 ESLGEGFRNYAILV----NGDWVFRFPKSQ---QGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG   97 (306)
T ss_dssp             EEEEECSSEEEEEE----TTTEEEEEESSH---HHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred             eecCCCcceeEEEE----CCEEEEEecCCc---hHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence            56788888899987    456788875321   1245789999999998753   2456677774 34567899999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYS  411 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~  411 (419)
                      ..+.+....         .++..+...++.|+++.|..||+.
T Consensus        98 ~~l~~~~~~---------~l~~~~~~~~~~~lg~~La~LH~~  130 (306)
T 3tdw_A           98 QILGEDGMA---------VLPDDAKDRLALQLAEFMNELSAF  130 (306)
T ss_dssp             EECHHHHHT---------TSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             eECchhhhh---------hCCHHHHHHHHHHHHHHHHHHhcC
Confidence            887663222         234556777899999999999975

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=95.74  E-value=0.042  Score=49.43  Aligned_cols=102  Identities=15%  Similarity=0.046  Sum_probs=72.0

Q ss_pred             eeCcCCce-EEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCC-CCCCcceeEEEecCCceeEEeccCCCCC
Q 014778          295 ILGRGGFG-KVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-HRNLLRLRGFCMTPTERLLVYPFMVNGS  371 (419)
Q Consensus       295 ~lG~G~fg-~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lv~e~~~~Gs  371 (419)
                      .+..|..| .||+.... ++..+.+|+-...    ...++.+|...|+.+. +--+.++++++.+.+..++|||++++.+
T Consensus        31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~----~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~  106 (272)
T 4gkh_A           31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS----VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKT  106 (272)
T ss_dssp             EEECSSSSCEEEEEECCTTCCCEEEEEEETH----HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEE
T ss_pred             EccCCCcCCeEEEEEecCCCeEEEEEECCCC----CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCcc
Confidence            34456555 68988764 4667888886322    2346888998888764 2235678899998889999999999988


Q ss_pred             hhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 014778          372 VASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYS  411 (419)
Q Consensus       372 L~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~  411 (419)
                      +.+.....           ..+...++.+++..+.-||+-
T Consensus       107 ~~~~~~~~-----------~~~~~~~~~~l~~~L~~Lh~~  135 (272)
T 4gkh_A          107 AFQVLEEY-----------PDSGENIVDALAVFLRRLHSI  135 (272)
T ss_dssp             HHHHHHHC-----------GGGHHHHHHHHHHHHHHHHTS
T ss_pred             ccccccCC-----------HHHHHHHHHHHHHHHHHhcCC
Confidence            87654322           112345778899999999964

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=95.73  E-value=0.035  Score=51.52  Aligned_cols=93  Identities=11%  Similarity=0.091  Sum_probs=70.7

Q ss_pred             CCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCC---CCCCcceeEEEecCCceeEEeccCCC
Q 014778          293 RNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV---HRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      .+.++.|.+..+|+... ++..+.+|.-...    ....|.+|.+.|+.+.   ...+.++++++...+..++||||+++
T Consensus        41 ~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~----~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G  115 (312)
T 3jr1_A           41 KEKLYSGEMNEIWLIND-EVQTVFVKINERS----YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNK  115 (312)
T ss_dssp             EEEECCSSSSEEEEEES-SSCEEEEEEEEGG----GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCC
T ss_pred             eEEeCCccceeeeEEEE-CCCeEEEEeCCcc----cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccC
Confidence            45689999999999886 4667888886432    2456888988887763   35677888988888889999999998


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYS  411 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~  411 (419)
                      ..+..                     ..+.++.+.|+-||..
T Consensus       116 ~~~~~---------------------~~~~~lG~~LA~LH~~  136 (312)
T 3jr1_A          116 SKNKQ---------------------SSFTIFAEKIAQLHQI  136 (312)
T ss_dssp             CCCCT---------------------THHHHHHHHHHHHHHC
T ss_pred             CCCCc---------------------hhHHHHHHHHHHHHcC
Confidence            75310                     1356888999999975

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=95.68  E-value=0.013  Score=54.17  Aligned_cols=103  Identities=13%  Similarity=-0.003  Sum_probs=71.0

Q ss_pred             CCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCC-CCC--CcceeEEEecCC---ceeEEecc
Q 014778          293 RNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-HRN--LLRLRGFCMTPT---ERLLVYPF  366 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H~n--iv~l~g~~~~~~---~~~lv~e~  366 (419)
                      .+.++.|.+..||+..    ..+++|.....   .....+.+|.++|..+. +..  +.+.+++....+   ..|+||||
T Consensus        25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~---~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~   97 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN----RDFIFKFPKHS---RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTK   97 (304)
T ss_dssp             CCEEEECSSEEEEEST----TSEEEEEESSH---HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEEC
T ss_pred             eEecCCCCcceEEEEC----CEEEEEecCCc---chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEcc
Confidence            3568899999999853    45888876432   22457889999998873 333  334444443333   34889999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYS  411 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~  411 (419)
                      +++.++.+....         .++..++..++.|+++.+..||+.
T Consensus        98 i~G~~l~~~~~~---------~l~~~~~~~~~~~l~~~la~LH~~  133 (304)
T 3sg8_A           98 IKGVPLTPLLLN---------NLPKQSQNQAAKDLARFLSELHSI  133 (304)
T ss_dssp             CCCEECCHHHHH---------TSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCCeECCccccc---------cCCHHHHHHHHHHHHHHHHHHHcC
Confidence            999877643221         355667788999999999999964

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.59  E-value=0.024  Score=54.35  Aligned_cols=103  Identities=13%  Similarity=0.174  Sum_probs=74.7

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCC-CcccCCCCCCCEEEc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPI-PTTLGKLSKLRFLRL  148 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~-p~~~~~l~~L~~l~l  148 (419)
                      .++.+.++++-. ..-...|.++..|+.+.+. +.++..-...|.++.+|+.++|..| ++ .| ...|.++.+|+.+.+
T Consensus       266 ~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          266 YLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             SCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEE
T ss_pred             cccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEE
Confidence            466777765433 2335678889999999996 4555333456888999999999865 54 34 356888999999999


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKL  177 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l  177 (419)
                      ..+ ++-.-...|.++++|+.+++.+|..
T Consensus       342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          342 PSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             CTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             Ccc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            755 5523345789999999999988754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.58  E-value=0.032  Score=53.11  Aligned_cols=102  Identities=16%  Similarity=0.235  Sum_probs=62.1

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCC-cccCCCCCCCEEEc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIP-TTLGKLSKLRFLRL  148 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p-~~~~~l~~L~~l~l  148 (419)
                      .++.+.+..+ +...-...+.++..|+.+.+..+ ++..-...+.++.+|+.+++..+ ++ .++ ..|.++++|+.+++
T Consensus       218 ~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l  293 (379)
T 4h09_A          218 NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVM  293 (379)
T ss_dssp             SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEE
T ss_pred             ccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccc
Confidence            3555555432 33333455667777888777665 44233445667777777777544 33 233 34567777888877


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNN  175 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N  175 (419)
                      .+|.++-.-...|.++.+|+.+++..+
T Consensus       294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~  320 (379)
T 4h09_A          294 DNSAIETLEPRVFMDCVKLSSVTLPTA  320 (379)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred             cccccceehhhhhcCCCCCCEEEcCcc
Confidence            777666333456777777877777544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.34  E-value=0.069  Score=51.10  Aligned_cols=112  Identities=10%  Similarity=0.232  Sum_probs=78.8

Q ss_pred             ccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCC-cccCCCCCCCEEEcccCcCcccCCc
Q 014778           81 LSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIP-TTLGKLSKLRFLRLNNNSLMGEIPR  159 (419)
Q Consensus        81 l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p-~~~~~l~~L~~l~l~~N~l~g~~p~  159 (419)
                      ++..-...|.++..|+.+.+..+..+ .-...|.++.+|+.+++. +.++ .|+ ..|.++.+|+.++|..| ++-.-..
T Consensus       253 v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~  328 (394)
T 4gt6_A          253 VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDD  328 (394)
T ss_dssp             EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred             ceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHh
Confidence            33333567888999999999776554 344578889999999996 4455 344 46778999999999865 5423345


Q ss_pred             cCcCCCCCcEEEcccCcCCCCCC--CCCCccccccccccCC
Q 014778          160 SLTNVNSLQVLDLSNNKLTGDIP--TNGSFSLFTPISFANN  198 (419)
Q Consensus       160 ~l~~l~~L~~l~l~~N~l~g~~p--~~~~~~~~~~~~~~~n  198 (419)
                      .|.++++|+.+.+..+ ++ .|+  .+..+.+|+.+.+.++
T Consensus       329 aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          329 AFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSC
T ss_pred             HhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCc
Confidence            7899999999998655 43 233  2344566777777665

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=95.25  E-value=0.023  Score=53.54  Aligned_cols=117  Identities=7%  Similarity=-0.051  Sum_probs=74.6

Q ss_pred             Cee-CcCCceEEEEEEeC-------CCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCC---CCCcceeEEEecC---
Q 014778          294 NIL-GRGGFGKVYKGRLT-------DGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVH---RNLLRLRGFCMTP---  357 (419)
Q Consensus       294 ~~l-G~G~fg~Vy~~~~~-------~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H---~niv~l~g~~~~~---  357 (419)
                      +.| +.|....+|+....       ++..+++|.-.....  ......+.+|..++..+..   -.+.++++++.+.   
T Consensus        26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~  105 (357)
T 3ats_A           26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL  105 (357)
T ss_dssp             EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred             EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence            556 88889999998764       266788887643320  1012357788888877642   3466788887665   


Q ss_pred             CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYS  411 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~  411 (419)
                      +..++||||+++..+.+.+...-. ..+...++..+...++.++++.|.-||+.
T Consensus       106 g~~~~v~e~l~G~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~La~LH~~  158 (357)
T 3ats_A          106 GTPFFLMDYVEGVVPPDVMPYTFG-DNWFADAPAERQRQLQDATVAALATLHSI  158 (357)
T ss_dssp             SSCEEEEECCCCBCCCBTTBGGGS-CSTTTTSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCceEEEEecCCCChhhcCccccc-ccccCCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            346899999998777653211000 00000234445567889999999999964

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=95.17  E-value=0.054  Score=51.93  Aligned_cols=103  Identities=11%  Similarity=-0.040  Sum_probs=61.2

Q ss_pred             CCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc------ccCHHHHHHHHHHHhcCCC--CCCc-ceeEEEecCCceeE
Q 014778          293 RNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT------QGGELQFQTEVEMISMAVH--RNLL-RLRGFCMTPTERLL  362 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~------~~~~~~f~~E~~~l~~l~H--~niv-~l~g~~~~~~~~~l  362 (419)
                      .+.+|.|.++.||++... +++.++||.......      ......+..|.+++..+..  +..+ +++.+  +.+..++
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l  112 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  112 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence            357899999999999764 467899998643211      1123456778888876632  3333 45543  3455689


Q ss_pred             EeccCCCCC-hhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhh
Q 014778          363 VYPFMVNGS-VASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAK  409 (419)
Q Consensus       363 v~e~~~~Gs-L~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH  409 (419)
                      ||||+++.. +.+.+....       ...     ..+.++++.|+-+|
T Consensus       113 vmE~l~g~~~~~~~l~~~~-------~~~-----~~~~~l~~~La~lH  148 (397)
T 2olc_A          113 VMEDLSHLKIARKGLIEGE-------NYP-----HLSQHIGEFLGKTL  148 (397)
T ss_dssp             EECCCTTSEEHHHHHHTTC-------CCT-----THHHHHHHHHHHHH
T ss_pred             EEEeCCCcchHHHHHhcCC-------cCH-----HHHHHHHHHHHHHh
Confidence            999998643 333332211       011     13567777777777

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=95.11  E-value=0.032  Score=34.93  Aligned_cols=34  Identities=21%  Similarity=0.216  Sum_probs=21.5

Q ss_pred             CCcccccchhhHHHHHHHHHHHHHHHHHHhcCCC
Q 014778          223 SATGAIAGGVAAGAALLFAAPAIALAYWRKRKPE  256 (419)
Q Consensus       223 ~~~~~iv~~v~~g~~~ll~~~~i~~~~~r~~~~~  256 (419)
                      +.+..|+++++.|++++++++...++++|||+.+
T Consensus         8 s~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~   41 (44)
T 2ks1_B            8 PKIPSIATGMVGALLLLLVVALGIGLFMRRRHIV   41 (44)
T ss_dssp             SCSSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCcceEEeehhHHHHHHHHHHHHHHHHhhhhHhh
Confidence            3445677788777776666666656666665543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.05  E-value=0.14  Score=48.48  Aligned_cols=89  Identities=11%  Similarity=0.064  Sum_probs=42.3

Q ss_pred             hhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCC
Q 014778           87 SQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNS  166 (419)
Q Consensus        87 ~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~  166 (419)
                      ..+.....|+.+.+..+ +...-...+..+..|+.+.+..+ ++..-...+.++.+|+.+.+..+ +...-...|.++++
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~  287 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN  287 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred             cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence            34445555565555443 22122334555566666665544 33111233445556666665433 22122234555666


Q ss_pred             CcEEEcccCcCC
Q 014778          167 LQVLDLSNNKLT  178 (419)
Q Consensus       167 L~~l~l~~N~l~  178 (419)
                      |+.+++.++.++
T Consensus       288 L~~i~l~~~~i~  299 (379)
T 4h09_A          288 LTKVVMDNSAIE  299 (379)
T ss_dssp             CCEEEECCTTCC
T ss_pred             cccccccccccc
Confidence            666666555443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.95  E-value=0.042  Score=52.67  Aligned_cols=85  Identities=16%  Similarity=0.167  Sum_probs=65.5

Q ss_pred             hhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCC-CcccCCCCCCCEEEcccCcCcccCCccCcCCC
Q 014778           87 SQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPI-PTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVN  165 (419)
Q Consensus        87 ~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~-p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~  165 (419)
                      ..+..+.+|+.+.+..+ ++..-...|.++.+|+.++|..+ ++ .| ...|.++++|+.+++..| ++-.-...|.+++
T Consensus       291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  366 (394)
T 4fs7_A          291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI  366 (394)
T ss_dssp             TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred             ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence            46778899999999765 55333456889999999999754 55 44 456889999999999877 6533345789999


Q ss_pred             CCcEEEcccC
Q 014778          166 SLQVLDLSNN  175 (419)
Q Consensus       166 ~L~~l~l~~N  175 (419)
                      +|+.+++..+
T Consensus       367 ~L~~i~lp~~  376 (394)
T 4fs7_A          367 NLKKVELPKR  376 (394)
T ss_dssp             TCCEEEEEGG
T ss_pred             CCCEEEECCC
Confidence            9999998765

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=94.83  E-value=0.092  Score=47.83  Aligned_cols=77  Identities=17%  Similarity=0.215  Sum_probs=53.5

Q ss_pred             CCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCC---CCcceeEEEecCCceeEEecc
Q 014778          290 FSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHR---NLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~---niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +...+.+|.|..+.||+.++.+|+.|.||+-.... ......|.+|.+.|+.+.-.   -+.+.+++.    ..++||||
T Consensus        17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~-~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~   91 (288)
T 3f7w_A           17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDA-PALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEW   91 (288)
T ss_dssp             EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTC-CCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEEC
T ss_pred             eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCC-cchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEe
Confidence            33446789999999999999999999999874332 22234688999988877422   233444432    34789999


Q ss_pred             CCCCC
Q 014778          367 MVNGS  371 (419)
Q Consensus       367 ~~~Gs  371 (419)
                      ++.+.
T Consensus        92 l~~~~   96 (288)
T 3f7w_A           92 VDERP   96 (288)
T ss_dssp             CCCCC
T ss_pred             ecccC
Confidence            98653

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=94.75  E-value=0.035  Score=34.69  Aligned_cols=34  Identities=26%  Similarity=0.328  Sum_probs=21.7

Q ss_pred             CCcccccchhhHHHHHHHHHHHHHHHHHHhcCCC
Q 014778          223 SATGAIAGGVAAGAALLFAAPAIALAYWRKRKPE  256 (419)
Q Consensus       223 ~~~~~iv~~v~~g~~~ll~~~~i~~~~~r~~~~~  256 (419)
                      +.+..|+++++.|++.+++++...++++|||+.+
T Consensus         7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~   40 (44)
T 2l2t_A            7 ARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIK   40 (44)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             CCcceEEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence            3455677778777776666666666666665543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.58  E-value=0.066  Score=51.24  Aligned_cols=117  Identities=14%  Similarity=0.087  Sum_probs=77.7

Q ss_pred             EEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCC-cccCCCCCCCEEEcc
Q 014778           71 VTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIP-TTLGKLSKLRFLRLN  149 (419)
Q Consensus        71 ~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p-~~~~~l~~L~~l~l~  149 (419)
                      ++.+.+..+.. ......+..+..|+.+.+..+.+.   ...+..+.+|+.+.+..+ ++ .|+ ..|.++++|+.++|.
T Consensus       255 l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp  328 (394)
T 4fs7_A          255 LESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLP  328 (394)
T ss_dssp             CCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCC
T ss_pred             ceeEEcCCCcc-eeeccccccccccceeccCceeec---cccccccccccccccccc-cc-eechhhhcCCCCCCEEEeC
Confidence            44455544332 233456778889999988776543   246788999999999765 54 343 467889999999997


Q ss_pred             cCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC--CCCcccccccccc
Q 014778          150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT--NGSFSLFTPISFA  196 (419)
Q Consensus       150 ~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~--~~~~~~~~~~~~~  196 (419)
                      ++ ++-.-...|.++++|+.+++..| ++ .|+.  +..+.+|+.+.+.
T Consensus       329 ~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          329 YL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEE
T ss_pred             Cc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEEC
Confidence            55 55333567899999999998766 43 2332  2334455555543

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=91.11  E-value=0.029  Score=55.17  Aligned_cols=60  Identities=5%  Similarity=0.051  Sum_probs=17.5

Q ss_pred             CeeCcCCceEEEEEEeCC-CCEEEE------EEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEec
Q 014778          294 NILGRGGFGKVYKGRLTD-GSLVAV------KRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMT  356 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~~-g~~vAv------K~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~  356 (419)
                      +.+|   ||.||+|.+.. ..+|||      |..+... .......|.+|..++...+|+|+++.+++...
T Consensus       148 ~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~  215 (463)
T 3cxl_A          148 EHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH  215 (463)
T ss_dssp             TTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred             ccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence            4565   99999999853 467888      7765432 22234578999999999999999999988754

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=88.34  E-value=0.89  Score=41.89  Aligned_cols=94  Identities=13%  Similarity=0.162  Sum_probs=51.7

Q ss_pred             CeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcC-----CCCCCccee-E--EEecCCceeEEec
Q 014778          294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-----VHRNLLRLR-G--FCMTPTERLLVYP  365 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-----~H~niv~l~-g--~~~~~~~~~lv~e  365 (419)
                      +.++.|..+.||+....+| .+++|+....     ..+...|..++..+     ..|.++... |  +....+..++|||
T Consensus        38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~-----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~  111 (346)
T 2q83_A           38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP-----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYD  111 (346)
T ss_dssp             EECC----CEEEEEEETTE-EEEEEEECSC-----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEE
T ss_pred             eeccccccCcEEEEEeCCC-CEEEEecCCC-----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEE
Confidence            3465667889999987655 4889988542     22333444444433     334444311 1  1123556789999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYS  411 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~  411 (419)
                      |+++.++..   .         .      ...+.++++.|+-||..
T Consensus       112 ~i~G~~~~~---~---------~------~~~~~~~g~~La~lH~~  139 (346)
T 2q83_A          112 WIEGRPFEL---T---------V------KQDLEFIMKGLADFHTA  139 (346)
T ss_dssp             CCCCBCCCT---T---------S------HHHHHHHHHHHHHHHHH
T ss_pred             eecCccCCC---C---------C------HHHHHHHHHHHHHHHHh
Confidence            999866531   0         0      01256777788888854

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=86.34  E-value=0.88  Score=28.29  Aligned_cols=20  Identities=15%  Similarity=0.223  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcC
Q 014778          235 GAALLFAAPAIALAYWRKRK  254 (419)
Q Consensus       235 g~~~ll~~~~i~~~~~r~~~  254 (419)
                      |+++++++....++++|||+
T Consensus        20 Gvll~vi~~l~~~~~~RRR~   39 (44)
T 2jwa_A           20 GILLVVVLGVVFGILIKRRQ   39 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhheehhh
Confidence            34334444444444445444

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=85.80  E-value=1.7  Score=41.97  Aligned_cols=96  Identities=11%  Similarity=0.129  Sum_probs=62.7

Q ss_pred             CeeCcCCceEEEEEEeCC--------CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCC-cceeEEEecCCceeEEe
Q 014778          294 NILGRGGFGKVYKGRLTD--------GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNL-LRLRGFCMTPTERLLVY  364 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~~--------g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~ni-v~l~g~~~~~~~~~lv~  364 (419)
                      +.|+.|....+|+...++        +..+.+|+....   .....+.+|..++..+...++ .++++.+.+    .+|+
T Consensus        79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~---~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~  151 (429)
T 1nw1_A           79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP---ETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLE  151 (429)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC---CCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEE
T ss_pred             EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC---CcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEE
Confidence            567788889999998753        468888887321   122456689888887754444 466665532    3899


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYS  411 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~  411 (419)
                      ||+++-++..    .        .+.   ...++.++++.|+-||..
T Consensus       152 e~l~G~~l~~----~--------~l~---~~~~~~~ia~~La~LH~~  183 (429)
T 1nw1_A          152 EYIPSRPLSC----H--------EIS---LAHMSTKIAKRVAKVHQL  183 (429)
T ss_dssp             CCCCEEECCT----T--------GGG---SHHHHHHHHHHHHHHTTC
T ss_pred             EEeCCcccCh----h--------hcC---CHHHHHHHHHHHHHHhCC
Confidence            9998644421    0        010   113577899999999964

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=85.18  E-value=2.5  Score=40.44  Aligned_cols=104  Identities=9%  Similarity=0.030  Sum_probs=59.8

Q ss_pred             CCeeCcCCceEEEEEEeCCCCEEEEEEccccc--------cccCHHHHHHHHHHHh-cCCCCCCcceeEEEecCCceeEE
Q 014778          293 RNILGRGGFGKVYKGRLTDGSLVAVKRLKEER--------TQGGELQFQTEVEMIS-MAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--------~~~~~~~f~~E~~~l~-~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      .+.+|.|....||+... +++.++||......        .......+..|+..+. ...+..+.+++++.  ++..++|
T Consensus        39 i~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~lv  115 (420)
T 2pyw_A           39 IKEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALIG  115 (420)
T ss_dssp             EEECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEEE
T ss_pred             EEEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEEE
Confidence            35789999999999975 46789999432110        0112334555544332 22234556666665  5667999


Q ss_pred             eccC-CCC-ChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 014778          364 YPFM-VNG-SVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYS  411 (419)
Q Consensus       364 ~e~~-~~G-sL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~  411 (419)
                      |||+ +++ .+.+.+....   .    ..     ..+.++++.|.-+|..
T Consensus       116 ~e~l~~g~~~l~~~l~~~~---~----~~-----~~~~~lg~~La~lH~~  153 (420)
T 2pyw_A          116 MRYLEPPHIILRKGLIAGI---E----YP-----FLADHMSDYMAKTLFF  153 (420)
T ss_dssp             ECCCCTTCEEHHHHHHHTC---C----CT-----THHHHHHHHHHHHHHT
T ss_pred             EeecCCcchhHHHHHhcCC---C----CH-----HHHHHHHHHHHHHHHh
Confidence            9999 763 3333332111   0    01     1466788888888853

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=82.19  E-value=2.9  Score=38.30  Aligned_cols=97  Identities=15%  Similarity=0.050  Sum_probs=58.9

Q ss_pred             CeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCC--CcceeEE-----EecCCceeEEecc
Q 014778          294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRN--LLRLRGF-----CMTPTERLLVYPF  366 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~n--iv~l~g~-----~~~~~~~~lv~e~  366 (419)
                      ..++ |....||+....+|+.+++|......  .....+..|..++..+....  +.+++..     ....+..++++||
T Consensus        32 ~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~--~~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~  108 (328)
T 1zyl_A           32 TPLN-SYENRVYQFQDEDRRRFVVKFYRPER--WTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPS  108 (328)
T ss_dssp             EEEC-CSSSEEEEECCTTCCCEEEEEECTTT--SCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEEC
T ss_pred             Eeec-CcccceEEEEcCCCCEEEEEEcCCCC--CCHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEe
Confidence            3466 77889999887777789999985321  13446677777776653222  3444443     1123455789999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYS  411 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~  411 (419)
                      +++..+..    .        ..      ..+.++++.|.-||..
T Consensus       109 i~G~~~~~----~--------~~------~~~~~~g~~La~lH~~  135 (328)
T 1zyl_A          109 VGGRQFEA----D--------NI------DQMEAVGRYLGRMHQT  135 (328)
T ss_dssp             CCCEECCS----S--------CH------HHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCC----C--------CH------HHHHHHHHHHHHHHHh
Confidence            98754320    0        01      1356777777778854

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=80.20  E-value=1.5  Score=26.35  Aligned_cols=9  Identities=22%  Similarity=0.190  Sum_probs=3.9

Q ss_pred             HHHHHHHHh
Q 014778          244 AIALAYWRK  252 (419)
Q Consensus       244 ~i~~~~~r~  252 (419)
                      .+.++++||
T Consensus        29 ~l~~~~~rr   37 (38)
T 2k1k_A           29 GILVFRSRR   37 (38)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHeec
Confidence            334444444

>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}

Probab=80.02  E-value=0.87  Score=27.88  Aligned_cols=28  Identities=32%  Similarity=0.544  Sum_probs=13.1

Q ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHh
Q 014778          225 TGAIAGGVAAGAALLFAAPAIALAYWRK  252 (419)
Q Consensus       225 ~~~iv~~v~~g~~~ll~~~~i~~~~~r~  252 (419)
                      ...++++++.|.+++++++.+.++++||
T Consensus        12 ~~~I~~~vv~Gv~ll~~iv~~~~~~~rR   39 (41)
T 2k9y_A           12 NLAVIGGVAVGVVLLLVLAGVGFFIHRR   39 (41)
T ss_dssp             STHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred             eEEEEeehhHHHHHHHHHHHHheeEeee
Confidence            3445556665555533233333444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	419
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	2e-23
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	3e-22
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	7e-22
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	9e-22
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-21
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-21
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	4e-21
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	8e-21
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-20
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	5e-20
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	7e-20
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-19
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	5e-19
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	8e-19
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	9e-19
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-18
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-18
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-18
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	2e-18
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	5e-18
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	6e-18
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	9e-18
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	1e-17
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	1e-17
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-11
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	4e-17
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	4e-17
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	8e-17
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	2e-16
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	2e-16
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-16
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	3e-16
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	3e-16
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	3e-16
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	4e-16
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	6e-16
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	6e-16
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-15
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	3e-15
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	7e-15
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	7e-15
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	7e-15
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	8e-15
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	1e-14
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	2e-14
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-11
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	4e-14
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	5e-14
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	7e-14
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	7e-14
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	8e-14
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	5e-13
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	6e-13
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	1e-12
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	8e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-05
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	4e-12
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	4e-12
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-11
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	3e-11
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	3e-11
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	8e-11
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	2e-10
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-10
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-09
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	8e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-04
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	4e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-09
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	4e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.004
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	3e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	4e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	3e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	5e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	5e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	5e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	6e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.001
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	7e-04

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.1 bits (241), Expect = 2e-23
 Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 19/149 (12%)

Query: 278 FSLRELQVATDNFSNR---------NILGRGGFGKVYKGRLT----DGSLVAVKRLKEER 324
           F+  +   A   F+            ++G G FG+V  G L         VA+K LK   
Sbjct: 7   FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGY 66

Query: 325 TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSG 384
           T+     F +E  ++    H N++ L G     T  +++  FM NGS+ S LR       
Sbjct: 67  TEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQND---- 122

Query: 385 FPSFFSYLFFIAFVQSLIQSLHFAKYSCV 413
               F+ +  +  ++ +   + +      
Sbjct: 123 --GQFTVIQLVGMLRGIAAGMKYLADMNY 149

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.2 bits (231), Expect = 3e-22
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 8/126 (6%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
              +    +G G FG V+ G   +   VA+K ++E      E  F  E E++    H  L
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAMS--EEDFIEEAEVMMKLSHPKL 62

Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHF 407
           ++L G C+      LV+ FM +G ++  LR    +    +       +       + + +
Sbjct: 63  VQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVC------EGMAY 116

Query: 408 AKYSCV 413
            + +CV
Sbjct: 117 LEEACV 122

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.2 bits (231), Expect = 7e-22
 Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 1/96 (1%)

Query: 283 LQVATDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISM 341
           +++  D+F   + LG G  G V+K      G ++A K +  E       Q   E++++  
Sbjct: 1   MELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHE 60

Query: 342 AVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
                ++   G   +  E  +    M  GS+   L+
Sbjct: 61  CNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLK 96

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 92.6 bits (229), Expect = 9e-22
 Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 6/107 (5%)

Query: 279 SLRELQVATDNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQF 332
            L  L+   +N      +G G FG+V++ R          ++VAVK LKEE +   +  F
Sbjct: 4   KLLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADF 63

Query: 333 QTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
           Q E  +++   + N+++L G C       L++ +M  G +   LR M
Sbjct: 64  QREAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSM 110

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.3 bits (226), Expect = 2e-21
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 8/134 (5%)

Query: 281 RELQVATDNFSNRNI-LGRGGFGKVYKGRL---TDGSLVAVKRLKEERTQGGELQFQTEV 336
           ++L +  DN    +I LG G FG V +G          VA+K LK+   +    +   E 
Sbjct: 1   KKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREA 60

Query: 337 EMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIA 396
           +++    +  ++RL G C      +LV      G +   L G           +    + 
Sbjct: 61  QIMHQLDNPYIVRLIGVCQAE-ALMLVMEMAGGGPLHKFLVGK---REEIPVSNVAELLH 116

Query: 397 FVQSLIQSLHFAKY 410
            V   ++ L    +
Sbjct: 117 QVSMGMKYLEEKNF 130

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.9 bits (225), Expect = 2e-21
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 5/125 (4%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
            + +    LG G FG V  G+      VA+K +KE      E +F  E +++    H  L
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSMS--EDEFIEEAKVMMNLSHEKL 61

Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHF 407
           ++L G C       ++  +M NG + + LR M               +      ++ L  
Sbjct: 62  VQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVC---EAMEYLES 118

Query: 408 AKYSC 412
            ++  
Sbjct: 119 KQFLH 123

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.7 bits (224), Expect = 4e-21
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 5/129 (3%)

Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLTDGS-----LVAVKRLKEERTQGGELQFQTEVEM 338
           ++     + + ++G G FG+VYKG L   S      VA+K LK   T+   + F  E  +
Sbjct: 3   EIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGI 62

Query: 339 ISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFV 398
           +    H N++RL G        +++  +M NG++   LR              L  IA  
Sbjct: 63  MGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAG 122

Query: 399 QSLIQSLHF 407
              + ++++
Sbjct: 123 MKYLANMNY 131

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (221), Expect = 8e-21
 Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 5/119 (4%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           +       LG G FG+V+ G     + VAVK LK+         F  E  ++    H+ L
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSMS--PDAFLAEANLMKQLQHQRL 70

Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLH 406
           +RL     T     ++  +M NGS+   L+         +    L   A +   +  + 
Sbjct: 71  VRLYAVV-TQEPIYIITEYMENGSLVDFLKTPS--GIKLTINKLLDMAAQIAEGMAFIE 126

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.7 bits (219), Expect = 2e-20
 Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLTDGSL---VAVKRLKEERTQGGELQFQTEVEMIS-MAV 343
           ++   ++++G G FG+V K R+    L    A+KR+KE  ++     F  E+E++  +  
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 69

Query: 344 HRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSF 388
           H N++ L G C       L   +  +G++   LR   ++   P+F
Sbjct: 70  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAF 114

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.5 bits (216), Expect = 5e-20
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 276 KRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLTD-GSLVAVKRLKEERTQGGELQFQT 334
              +  + ++   + + ++ LG G +G+VY+G        VAVK LKE+  +  E  F  
Sbjct: 5   SSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEE--FLK 62

Query: 335 EVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFF 394
           E  ++    H NL++L G C       ++  FM  G++   L          S    L+ 
Sbjct: 63  EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYL--RECNRQEVSAVVLLYM 120

Query: 395 IAFVQSLIQSLH 406
              + S ++ L 
Sbjct: 121 ATQISSAMEYLE 132

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.2 bits (215), Expect = 7e-20
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 7/98 (7%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMIS- 340
           +  S    LG G FGKV +              VAVK LK            +E++++S 
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 82

Query: 341 MAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRG 378
           +  H N++ L G C      L++  +   G + + LR 
Sbjct: 83  LGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRR 120

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (212), Expect = 2e-19
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 7/91 (7%)

Query: 289 NFSNRNILGRGGFGKVYKGRLTDGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVH 344
           +F+   ++GRG FG VY G L D        AVK L      G   QF TE  ++    H
Sbjct: 30  HFNE--VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSH 87

Query: 345 RNLLRLRGFCM-TPTERLLVYPFMVNGSVAS 374
            N+L L G C+ +    L+V P+M +G + +
Sbjct: 88  PNVLSLLGICLRSEGSPLVVLPYMKHGDLRN 118

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.9 bits (209), Expect = 5e-19
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 6/104 (5%)

Query: 282 ELQVATDNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTE 335
           E +VA +  +    LG+G FG VY+G           + VA+K + E  +    ++F  E
Sbjct: 14  EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNE 73

Query: 336 VEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
             ++      +++RL G        L++   M  G + S LR +
Sbjct: 74  ASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSL 117

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (206), Expect = 8e-19
 Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
                   +G+G FG V  G    G+ VAVK +K + T      F  E  +++   H NL
Sbjct: 7   KELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDATAQ---AFLAEASVMTQLRHSNL 62

Query: 348 LRLRGFCMTPTERL-LVYPFMVNGSVASCLR 377
           ++L G  +     L +V  +M  GS+   LR
Sbjct: 63  VQLLGVIVEEKGGLYIVTEYMAKGSLVDYLR 93

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 84.3 bits (208), Expect = 9e-19
 Identities = 20/134 (14%), Positives = 52/134 (38%), Gaps = 8/134 (5%)

Query: 281 RELQVATDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMI 339
           ++ +   D +  R++LG G F +V          LVA+K + ++  +G E   + E+ ++
Sbjct: 2   KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVL 61

Query: 340 SMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQ 399
               H N++ L     +     L+   +  G +   +           F++       + 
Sbjct: 62  HKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVE-------KGFYTERDASRLIF 114

Query: 400 SLIQSLHFAKYSCV 413
            ++ ++ +     +
Sbjct: 115 QVLDAVKYLHDLGI 128

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.9 bits (207), Expect = 1e-18
 Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 7/123 (5%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGEL--QFQTEVEMISMAV 343
              FS+   +G G FG VY  R + +  +VA+K++     Q  E       EV  +    
Sbjct: 14  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 73

Query: 344 HRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQ 403
           H N ++ RG  +      LV  + +  +                              + 
Sbjct: 74  HPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVH----KKPLQEVEIAAVTHGALQGLA 129

Query: 404 SLH 406
            LH
Sbjct: 130 YLH 132

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (206), Expect = 1e-18
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLTDGS------LVAVKRLKEERTQGGELQFQTEVEMISM 341
           +N     +LG G FGKV        S       VAVK LKE+          +E++M++ 
Sbjct: 37  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQ 96

Query: 342 AV-HRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRG 378
              H N++ L G C       L++ +   G + + LR 
Sbjct: 97  LGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRS 134

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.7 bits (206), Expect = 2e-18
 Identities = 19/121 (15%), Positives = 49/121 (40%), Gaps = 2/121 (1%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHR 345
              ++N + +G G +G V       +   VA+K++     Q    +   E++++    H 
Sbjct: 7   GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHE 66

Query: 346 NLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSL 405
           N++ +      PT   +   ++V   + + L    + +   S     +F+  +   ++ +
Sbjct: 67  NIIGINDIIRAPTIEQMKDVYLVTHLMGADLYK-LLKTQHLSNDHICYFLYQILRGLKYI 125

Query: 406 H 406
           H
Sbjct: 126 H 126

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (203), Expect = 2e-18
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 5/120 (4%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRN 346
           +++     LG G +G+V           VAVK +  +R        + E+ +  M  H N
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64

Query: 347 LLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLH 406
           +++  G       + L   +   G +   +       G P   +  FF   +  +   LH
Sbjct: 65  VVKFYGHRREGNIQYLFLEYCSGGELFDRIEPD---IGMPEPDAQRFFHQLMAGV-VYLH 120

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (200), Expect = 5e-18
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNL 347
           ++      LG+G FG+V+ G     + VA+K LK          F  E +++    H  L
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTMS--PEAFLQEAQVMKKLRHEKL 74

Query: 348 LRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHF 407
           ++L     +     +V  +M  GS+   L+G             +   A + S +  +  
Sbjct: 75  VQLYAVV-SEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQL--VDMAAQIASGMAYVER 131

Query: 408 AKY 410
             Y
Sbjct: 132 MNY 134

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.4 bits (200), Expect = 6e-18
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLT--------DGSLVAVKRLKEERTQGGELQFQTEVEMI 339
           D       LG G FG+V                + VAVK LK + T+       +E+EM+
Sbjct: 13  DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM 72

Query: 340 SMAV-HRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
            M   H+N++ L G C       ++  +   G++   L+
Sbjct: 73  KMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQ 111

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.8 bits (199), Expect = 9e-18
 Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 10/127 (7%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQ-FQTEVEMISMAVHRN 346
              +    +G G FG VYKG+      VAVK L        +LQ F+ EV ++    H N
Sbjct: 8   GQITVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 65

Query: 347 LLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLH 406
           +L   G+  T  +  +V  +    S+   L          + F  +  I   +   Q + 
Sbjct: 66  ILLFMGYS-TAPQLAIVTQWCEGSSLYHHLH------IIETKFEMIKLIDIARQTAQGMD 118

Query: 407 FAKYSCV 413
           +     +
Sbjct: 119 YLHAKSI 125

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.7 bits (201), Expect = 1e-17
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLTD-GSLVAVKRLKEER--TQGGELQFQTEVEMISMAV- 343
           ++FS   I+GRGGFG+VY  R  D G + A+K L ++R   + GE     E  M+S+   
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 344 --HRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
                ++ +     TP +   +   M  G +   L 
Sbjct: 64  GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLS 99

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (197), Expect = 1e-17
 Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 9/126 (7%)

Query: 294 NILGRGGFGKVYKGRLTD---GSLVAVKRLKEERTQGGEL-QFQTEVEMISMAVHRNLLR 349
             LG G FG V KG          VAVK LK E        +   E  ++    +  ++R
Sbjct: 13  KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVR 72

Query: 350 LRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAK 409
           + G C   +  +LV      G +   L+     +      + +  +  V   ++ L  + 
Sbjct: 73  MIGICEAES-WMLVMEMAELGPLNKYLQQ----NRHVKDKNIIELVHQVSMGMKYLEESN 127

Query: 410 YSCVSI 415
           +    +
Sbjct: 128 FVHRDL 133

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.7 bits (196), Expect = 2e-17
 Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 4/133 (3%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQ-FQTEVEMISMAVHR 345
           +++     +G G +G+  K R  +DG ++  K L        E Q   +EV ++    H 
Sbjct: 4   EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHP 63

Query: 346 NLLRLRGFCMTPTERL--LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQ 403
           N++R     +  T     +V  +   G +AS +        +      L  +  +   ++
Sbjct: 64  NIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALK 123

Query: 404 SLHFAKYSCVSIL 416
             H       ++L
Sbjct: 124 ECHRRSDGGHTVL 136

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 79.8 bits (195), Expect = 3e-17
 Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 12/187 (6%)

Query: 29  EGDALNALKTNLADPNNVLQSWDATLVNPC--TWFHVTCNSENSVTRV---DLGNANLSG 83
           +  AL  +K +L +P   L SW  T  + C  TW  V C+++    RV   DL   NL  
Sbjct: 7   DKQALLQIKKDLGNPT-TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64

Query: 84  --QLVSQLGQLTNLQYLELYSN-NISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKL 140
              + S L  L  L +L +    N+ G +P  +  LT L  L +   N++G IP  L ++
Sbjct: 65  PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 141 SKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSF--SLFTPISFANN 198
             L  L  + N+L G +P S++++ +L  +    N+++G IP +      LFT ++ + N
Sbjct: 125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184

Query: 199 QLNNPPP 205
           +L    P
Sbjct: 185 RLTGKIP 191

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 68.2 bits (165), Expect = 2e-13
 Identities = 22/61 (36%), Positives = 33/61 (54%)

Query: 148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSP 207
           L NN + G +P+ LT +  L  L++S N L G+IP  G+   F   ++ANN+     P P
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

Query: 208 P 208
            
Sbjct: 311 A 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.8 bits (156), Expect = 3e-12
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 93  TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNS 152
            NL  L+L +N I G +P+ L  L  L SL++  NNL G IP   G L +       NN 
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

Query: 153 LMGEIP 158
            +   P
Sbjct: 303 CLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 62.8 bits (151), Expect = 1e-11
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 123 DLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP 182
           DL  N + G +P  L +L  L  L ++ N+L GEIP    N+    V   +NNK     P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.4 bits (142), Expect = 2e-10
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 3/81 (3%)

Query: 56  NPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGN 115
           N   +         ++  +DL N  + G L   L QL  L  L +  NN+ G++P + GN
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGN 289

Query: 116 LTNLVSLDLYLNNL--NGPIP 134
           L          N      P+P
Sbjct: 290 LQRFDVSAYANNKCLCGSPLP 310

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (193), Expect = 4e-17
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 10/126 (7%)

Query: 294 NILGRGGFGKVYKGRLTD-GSLVAVKRLKEERTQGGELQ-FQTEVEMISMAVHRNLLRLR 351
             +GRG F  VYKG  T+    VA   L++ +    E Q F+ E EM+    H N++R  
Sbjct: 15  IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFY 74

Query: 352 GFCMTPTER----LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHF 407
               +  +     +LV   M +G++ + L+                +   +   +Q LH 
Sbjct: 75  DSWESTVKGKKCIVLVTELMTSGTLKTYLKR----FKVMKIKVLRSWCRQILKGLQFLHT 130

Query: 408 AKYSCV 413
                +
Sbjct: 131 RTPPII 136

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (193), Expect = 4e-17
 Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 10/107 (9%)

Query: 276 KRFSLRELQVATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQF 332
           ++++L       ++F     LG+G FG VY  R      ++A+K L + +    G E Q 
Sbjct: 1   RQWAL-------EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQL 53

Query: 333 QTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
           + EVE+ S   H N+LRL G+    T   L+  +   G+V   L+ +
Sbjct: 54  RREVEIQSHLRHPNILRLYGYFHDATRVYLILEYAPLGTVYRELQKL 100

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (192), Expect = 8e-17
 Identities = 17/121 (14%), Positives = 42/121 (34%), Gaps = 7/121 (5%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHR 345
              ++    +G+G  G VY    +  G  VA++++  ++    E     E+ ++    + 
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKE-LIINEILVMRENKNP 77

Query: 346 NLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSL 405
           N++      +   E  +V  ++  GS+   +                         ++ L
Sbjct: 78  NIVNYLDSYLVGDELWVVMEYLAGGSLTDVVT-----ETCMDEGQIAAVCRECLQALEFL 132

Query: 406 H 406
           H
Sbjct: 133 H 133

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 77.4 bits (190), Expect = 2e-16
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 2/90 (2%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRN 346
           D++     LG G FG V++      G+  A K +        E   + E++ +S+  H  
Sbjct: 26  DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKE-TVRKEIQTMSVLRHPT 84

Query: 347 LLRLRGFCMTPTERLLVYPFMVNGSVASCL 376
           L+ L        E +++Y FM  G +   +
Sbjct: 85  LVNLHDAFEDDNEMVMIYEFMSGGELFEKV 114

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 76.8 bits (188), Expect = 2e-16
 Identities = 22/121 (18%), Positives = 50/121 (41%), Gaps = 8/121 (6%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRN 346
           + +     +G G +G VYK +   G   A+K+++ E+  +G       E+ ++    H N
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN 61

Query: 347 LLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLH 406
           +++L     T    +LV+  +        L+ +  V         +   +F+  L+  + 
Sbjct: 62  IVKLYDVIHTKKRLVLVFEHLDQ-----DLKKLLDVCEGG--LESVTAKSFLLQLLNGIA 114

Query: 407 F 407
           +
Sbjct: 115 Y 115

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (188), Expect = 2e-16
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 3/95 (3%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVH 344
           ++F    ILG G F  V   R L      A+K L++     +        E +++S   H
Sbjct: 8   EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDH 67

Query: 345 RNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGM 379
              ++L        +      +  NG +   +R +
Sbjct: 68  PFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKI 102

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (188), Expect = 3e-16
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 293 RNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG 352
           +  +G+G FG+V++G+   G  VAVK       +      + E+    M  H N+L    
Sbjct: 8   QESIGKGRFGEVWRGKWR-GEEVAVKIFSSREER--SWFREAEIYQTVMLRHENILGFIA 64

Query: 353 FCM----TPTERLLVYPFMVNGSVASCLR 377
                  T T+  LV  +  +GS+   L 
Sbjct: 65  ADNKDNGTWTQLWLVSDYHEHGSLFDYLN 93

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 77.4 bits (190), Expect = 3e-16
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 2/91 (2%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRN 346
           D +     LG G FG V++      G +   K +            + E+ +++   H  
Sbjct: 29  DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKY-TVKNEISIMNQLHHPK 87

Query: 347 LLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           L+ L        E +L+  F+  G +   + 
Sbjct: 88  LINLHDAFEDKYEMVLILEFLSGGELFDRIA 118

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (186), Expect = 3e-16
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 5/88 (5%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLTD----GSLVAVKRLKEERTQGGELQFQTEVEMISMAV 343
           +       +G G FG V++G           VA+K  K   +     +F  E   +    
Sbjct: 7   ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 66

Query: 344 HRNLLRLRGFCMTPTERLLVYPFMVNGS 371
           H ++++L G   T     ++      G 
Sbjct: 67  HPHIVKLIGVI-TENPVWIIMELCTLGE 93

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.4 bits (187), Expect = 4e-16
 Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLTD-----GSLVAVKRLKEERTQGGELQFQTEVEMISMA 342
             F    +LG G FG VYKG            VA+K L+E  +     +   E  +++  
Sbjct: 9   TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 68

Query: 343 VHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIA 396
            + ++ RL G C+T T +L+    M  G +   +R      G     ++   IA
Sbjct: 69  DNPHVCRLLGICLTSTVQLITQ-LMPFGCLLDYVREHKDNIGSQYLLNWCVQIA 121

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (186), Expect = 6e-16
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 287 TDNFSNRNILGRGGFGKVYKGRLTD-GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHR 345
            D +     LG G FGKVYK +  +   L A K +  +  +  E  +  E+++++   H 
Sbjct: 11  EDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELE-DYMVEIDILASCDHP 69

Query: 346 NLLRLRGFCMTPTERLLVYPFMVNGSVASCL 376
           N+++L           ++  F   G+V + +
Sbjct: 70  NIVKLLDAFYYENNLWILIEFCAGGAVDAVM 100

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (184), Expect = 6e-16
 Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLT----DGSLVAVKRLKEERTQGGEL--QFQTEVEMISM 341
            +      LG G FG V +G           VAVK LK +     E    F  EV  +  
Sbjct: 8   KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHS 67

Query: 342 AVHRNLLRLRGFCMTPTERLLVYPFMVNGS 371
             HRNL+RL G  +TP  + +V      GS
Sbjct: 68  LDHRNLIRLYGVVLTPPMK-MVTELAPLGS 96

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.1 bits (181), Expect = 2e-15
 Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 8/128 (6%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLK-EERTQGGELQFQTEVEMISMAVHR 345
           +NF     +G G +G VYK R    G +VA+K+++ +  T+G       E+ ++    H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61

Query: 346 NLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSL 405
           N+++L     T  +  LV+ F+            F+ +   +        +++  L+Q L
Sbjct: 62  NIVKLLDVIHTENKLYLVFEFLHQDL------KKFMDASALTGIPLPLIKSYLFQLLQGL 115

Query: 406 HFAKYSCV 413
            F     V
Sbjct: 116 AFCHSHRV 123

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 73.2 bits (179), Expect = 3e-15
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEE--RTQGGELQFQTEVEMISMAV 343
           +D +    ILG GG  +V+  R L     VAVK L+ +  R     L+F+ E +  +   
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65

Query: 344 HRNLLRLRGFCMTPTERL----LVYPFMVNGSVASCLRGM 379
           H  ++ +       T       +V  ++   ++   +   
Sbjct: 66  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTE 105

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (179), Expect = 7e-15
 Identities = 28/126 (22%), Positives = 56/126 (44%), Gaps = 13/126 (10%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLTD-GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRN 346
            ++++  ++G G FG VY+ +L D G LVA+K++ +++          E++++    H N
Sbjct: 20  VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-----FKNRELQIMRKLDHCN 74

Query: 347 LLRLRGFCMTPTER------LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQS 400
           ++RLR F  +  E+       LV  ++                  P  +  L+     +S
Sbjct: 75  IVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRS 134

Query: 401 LIQSLH 406
           L   +H
Sbjct: 135 L-AYIH 139

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 7e-15
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 8/100 (8%)

Query: 288 DNFSNRNILGRGGFGKVYKGR------LTDGSLVAVKRLKEERTQGGELQFQTEVEMISM 341
           D       LGRG FG+V +              VAVK LKE  T        +E++++  
Sbjct: 13  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 72

Query: 342 AVHR-NLLRLRGFCMTPTERL-LVYPFMVNGSVASCLRGM 379
             H  N++ L G C  P   L ++  F   G++++ LR  
Sbjct: 73  IGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSK 112

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (178), Expect = 7e-15
 Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 3/91 (3%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRN 346
           + +     LGRG FG V++    +       K +K + T   ++  + E+ ++++A HRN
Sbjct: 5   EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTD--QVLVKKEISILNIARHRN 62

Query: 347 LLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +L L     +  E ++++ F+    +   + 
Sbjct: 63  ILHLHESFESMEELVMIFEFISGLDIFERIN 93

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (176), Expect = 8e-15
 Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 8/129 (6%)

Query: 286 ATDNFSNRNILGRGGFGKVYKGR--LTDGSLVAVKRLK-EERTQGGELQFQTEVEMISMA 342
           A   +     +G G +GKV+K R     G  VA+KR++ +   +G  L    EV ++   
Sbjct: 5   ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHL 64

Query: 343 V---HRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQ 399
               H N++RL   C            +V   V   L         P   +        Q
Sbjct: 65  ETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQ 124

Query: 400 SL--IQSLH 406
            L  +  LH
Sbjct: 125 LLRGLDFLH 133

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (175), Expect = 1e-14
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)

Query: 294 NILGRGGFGKVYKGRLT-DGSLVAVKRLK----EERTQGGELQFQTEVEMISMAVHRNLL 348
           + LG G F  VYK R      +VA+K++K     E   G       E++++    H N++
Sbjct: 4   DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNII 63

Query: 349 RLRGFCMTPTERLLVYPFM 367
            L       +   LV+ FM
Sbjct: 64  GLLDAFGHKSNISLVFDFM 82

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (174), Expect = 2e-14
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGEL-----QFQTEVEMISM 341
           D +     LG G F  V K R  + G   A K +K+ RT+           + EV ++  
Sbjct: 10  DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKE 69

Query: 342 AVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASC 375
             H N++ L       T+ +L+   +  G +   
Sbjct: 70  IQHPNVITLHEVYENKTDVILILELVAGGELFDF 103

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (174), Expect = 2e-14
 Identities = 19/135 (14%), Positives = 43/135 (31%), Gaps = 6/135 (4%)

Query: 278 FSLRELQVATDNFSNR----NILGRGGFGKVYKGR-LTDGSLVAVKRL-KEERTQGGELQ 331
           F  +E+                +G G +G V        G+ VA+K+L +  +++    +
Sbjct: 4   FYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKR 63

Query: 332 FQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSY 391
              E+ ++    H N++ L               F +         G  +          
Sbjct: 64  AYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRI 123

Query: 392 LFFIAFVQSLIQSLH 406
            F +  +   ++ +H
Sbjct: 124 QFLVYQMLKGLRYIH 138

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.6 bits (174), Expect = 3e-14
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 6/94 (6%)

Query: 58  CTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLT 117
                   ++  ++T + L   N+S   +S +  LT LQ L   +N +S      L NLT
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD--VSSLANLT 351

Query: 118 NLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN 151
           N+  L    N ++   P  L  L+++  L LN+ 
Sbjct: 352 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.2 bits (173), Expect = 4e-14
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 91  QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNN 150
            L NL YL LY NNIS   P  + +LT L  L    N ++    ++L  L+ + +L   +
Sbjct: 305 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGH 360

Query: 151 NSLMGEIPRSLTNVNSLQVLDLSNN 175
           N +    P  L N+  +  L L++ 
Sbjct: 361 NQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 64.6 bits (156), Expect = 6e-12
 Identities = 35/160 (21%), Positives = 54/160 (33%), Gaps = 48/160 (30%)

Query: 65  CNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVP-EELGNLTNL---- 119
                ++  + L    L    +  L  LTNL  L+L +N IS   P   L  LT L    
Sbjct: 215 LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGA 272

Query: 120 -------------------------------------VSLDLYLNNLNGPIPTTLGKLSK 142
                                                  L LY NN++   P  +  L+K
Sbjct: 273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTK 330

Query: 143 LRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP 182
           L+ L   NN +      SL N+ ++  L   +N+++   P
Sbjct: 331 LQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.8 bits (146), Expect = 9e-11
 Identities = 40/168 (23%), Positives = 65/168 (38%), Gaps = 27/168 (16%)

Query: 58  CTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLT 117
                       ++  +   N  +S   ++ LG LTNL  L L  N +       L +LT
Sbjct: 186 KVSDISVLAKLTNLESLIATNNQISD--ITPLGILTNLDELSLNGNQLKD--IGTLASLT 241

Query: 118 NLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIP------------------- 158
           NL  LDL  N ++   P  L  L+KL  L+L  N +    P                   
Sbjct: 242 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 299

Query: 159 -RSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPP 205
              ++N+ +L  L L  N ++   P   S +    + FANN++++   
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISPV-SSLTKLQRLFFANNKVSDVSS 346

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 4e-07
 Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 71  VTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLN 130
             +  LG  N++         L  +  L+     I  K  + +  L NL  ++   N L 
Sbjct: 24  KMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLT 79

Query: 131 GPIPTTLGKLSKLRFLRLNNN 151
              P  L  L+KL  + +NNN
Sbjct: 80  DITP--LKNLTKLVDILMNNN 98

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.5 bits (109), Expect = 3e-06
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 115 NLTNLVSLDLYLNNLNGPIPTT-LGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLS 173
            L   +   L   N+   +  T L +++ L+  RL   S+ G     +  +N+L  ++ S
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFS 74

Query: 174 NNKLTGDIPTNGSFSL 189
           NN+LT   P      L
Sbjct: 75  NNQLTDITPLKNLTKL 90

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.5 bits (172), Expect = 4e-14
 Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 7/122 (5%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGEL--QFQTEVEMISMAVH 344
            +F     LG G FG+V+  R   +G   A+K LK+E     +       E  M+S+  H
Sbjct: 4   QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTH 63

Query: 345 RNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQS 404
             ++R+ G      +  ++  ++        L  +   S         F+ A V   ++ 
Sbjct: 64  PFIIRMWGTFQDAQQIFMIMDYIEG----GELFSLLRKSQRFPNPVAKFYAAEVCLALEY 119

Query: 405 LH 406
           LH
Sbjct: 120 LH 121

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.3 bits (171), Expect = 5e-14
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 8/130 (6%)

Query: 282 ELQVATDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMIS 340
           EL+V  + +     +G G FG +Y G  +  G  VA+K    +       Q   E ++  
Sbjct: 2   ELRVG-NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKHP---QLHIESKIYK 57

Query: 341 MAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQS 400
           M      +    +C    +  ++   ++     S        S   S  + L     + S
Sbjct: 58  MMQGGVGIPTIRWCGAEGDYNVMVMELLGP---SLEDLFNFCSRKFSLKTVLLLADQMIS 114

Query: 401 LIQSLHFAKY 410
            I+ +H   +
Sbjct: 115 RIEYIHSKNF 124

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 69.3 bits (169), Expect = 7e-14
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLK--------EERTQGGELQFQTEVE- 337
           +N+  + ILGRG    V +          AVK +          E  Q        EV+ 
Sbjct: 3   ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI 62

Query: 338 MISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           +  ++ H N+++L+    T T   LV+  M  G +   L 
Sbjct: 63  LRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLT 102

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (170), Expect = 7e-14
 Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 4/94 (4%)

Query: 288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGEL--QFQTEVEMISMAV- 343
           ++F    +LG+G FGKV+           A+K LK++     +       E  ++S+A  
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61

Query: 344 HRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLR 377
           H  L  +     T      V  ++  G +   ++
Sbjct: 62  HPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQ 95

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 69.9 bits (170), Expect = 8e-14
 Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVE-MISMAVHR 345
           D++     LGRG + +V++   +T+   V VK LK  + +    + + E++ + ++    
Sbjct: 35  DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKKK----KIKREIKILENLRGGP 90

Query: 346 NLLRLRGFCMTPTERL--LVYPFMVNGSVASCLRGM 379
           N++ L      P  R   LV+  + N       + +
Sbjct: 91  NIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTL 126

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (163), Expect = 5e-13
 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 7/131 (5%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRL-KEERTQGGELQFQTEVEMISMAVHR 345
             +     +G+G FG+V+K R    G  VA+K++  E   +G  +    E++++ +  H 
Sbjct: 10  SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHE 69

Query: 346 NLLRLRGFCMTPTERLLV---YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLI 402
           N++ L   C T            ++V       L G+         F+       +Q L+
Sbjct: 70  NVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVK--FTLSEIKRVMQMLL 127

Query: 403 QSLHFAKYSCV 413
             L++   + +
Sbjct: 128 NGLYYIHRNKI 138

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (163), Expect = 6e-13
 Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 2/131 (1%)

Query: 287 TDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGEL-QFQTEVEMISMAVH 344
            + + N + +G G +G V        G  VAVK+L           +   E+ ++    H
Sbjct: 17  PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKH 76

Query: 345 RNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQS 404
            N++ L                 +   +        +     +     F I  +   ++ 
Sbjct: 77  ENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKY 136

Query: 405 LHFAKYSCVSI 415
           +H A      +
Sbjct: 137 IHSADIIHRDL 147

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 1e-12
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 3/102 (2%)

Query: 285 VATDNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGEL--QFQTEVEMISM 341
           V  ++F    +LG+G FGKV   R    G   A+K L++E     +      TE  ++  
Sbjct: 2   VTMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQN 61

Query: 342 AVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVS 383
             H  L  L+    T      V  +   G +   L    + +
Sbjct: 62  TRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFT 103

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 2e-12
 Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 9/128 (7%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLK-EERTQGGELQFQTEVEMISMAVHR 345
             +     +G G +G V+K +      +VA+KR++ ++  +G       E+ ++    H+
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61

Query: 346 NLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSL 405
           N++RL     +  +  LV+ F          +     +G         F+     L++ L
Sbjct: 62  NIVRLHDVLHSDKKLTLVFEFCDQ----DLKKYFDSCNGDLDPEIVKSFLF---QLLKGL 114

Query: 406 HFAKYSCV 413
            F     V
Sbjct: 115 GFCHSRNV 122

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.4 bits (158), Expect = 2e-12
 Identities = 31/165 (18%), Positives = 47/165 (28%), Gaps = 10/165 (6%)

Query: 58  CTWFHVTCNSEN----------SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISG 107
           C    V C+                 +DL N  ++         L NL  L L +N IS 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 108 KVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSL 167
             P     L  L  L L  N L          L +LR        +   +   L  +  +
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129

Query: 168 QVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPPPPLQ 212
           ++          +          + I  A+  +   P   PP L 
Sbjct: 130 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT 174

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.3 bits (129), Expect = 8e-09
 Identities = 43/224 (19%), Positives = 71/224 (31%), Gaps = 18/224 (8%)

Query: 3   KLERVVWAFLVSILFFDLLLRVASNAEGDALNALK--TNLADPNNVLQSWDATLVNPCTW 60
           +++   +  L ++    L+    S     A   L     L    N L+     +      
Sbjct: 45  EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQE 104

Query: 61  FHVTCNSENSVTRVDLG-------------NANLSGQLVSQLGQLTNLQYLELYSNNISG 107
             V  N    V +                     SG        +  L Y+ +   NI+ 
Sbjct: 105 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 163

Query: 108 KVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSL 167
            +P+  G   +L  L L  N +      +L  L+ L  L L+ NS+      SL N   L
Sbjct: 164 TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 221

Query: 168 QVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPPPSPPPPL 211
           + L L+NNKL               +   NN ++    +   P 
Sbjct: 222 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 7/115 (6%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           S+T + L    ++    + L  L NL  L L  N+IS      L N  +L  L L  N L
Sbjct: 172 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 231

Query: 130 NGPIPTTLGKLSKLRFLRLNNNSLMG------EIPRSLTNVNSLQVLDLSNNKLT 178
              +P  L     ++ + L+NN++          P   T   S   + L +N + 
Sbjct: 232 V-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 62.5 bits (151), Expect = 4e-12
 Identities = 15/122 (12%), Positives = 30/122 (24%), Gaps = 16/122 (13%)

Query: 294 NILGRGGFGKVYKGRLTDGSLVAVKRLKEERT---------QGGELQFQTEVEMISMAVH 344
            ++G G    V+           VK  K   T           G+L F       +    
Sbjct: 6   KLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEF 65

Query: 345 RNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQS 404
           R L +L+G  +          +   G+                  +    +  +   +  
Sbjct: 66  RALQKLQGLAV-------PKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAK 118

Query: 405 LH 406
            +
Sbjct: 119 FY 120

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (155), Expect = 4e-12
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 295 ILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGE-----LQFQTEVEMISM--AVHRN 346
           +LG GGFG VY G  ++D   VA+K ++++R           +   EV ++    +    
Sbjct: 11  LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 70

Query: 347 LLRLRGFCMTPTERLLVYPFMVNGS 371
           ++RL  +   P   +L+        
Sbjct: 71  VIRLLDWFERPDSFVLILERPEPVQ 95

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 61.7 bits (149), Expect = 2e-11
 Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 9/117 (7%)

Query: 296 LGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLL-RLRGF 353
           +G G FG +++G  L +   VA+K            Q + E     +      +  +  F
Sbjct: 13  IGEGSFGVIFEGTNLLNNQQVAIKFEPRRSDAP---QLRDEYRTYKLLAGCTGIPNVYYF 69

Query: 354 CMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKY 410
                  +LV   +      S    + +     S  +       + + +QS+H    
Sbjct: 70  GQEGLHNVLVIDLLGP----SLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSL 122

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (150), Expect = 3e-11
 Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 17/119 (14%)

Query: 295 ILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-HRNLLRLRG 352
           +LG G  GKV +          A+K L++        + + EVE+   A    +++R+  
Sbjct: 19  VLGLGINGKVLQIFNKRTQEKFALKMLQDCP------KARREVELHWRASQCPHIVRIVD 72

Query: 353 FCMTPTER----LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHF 407
                       L+V   +  G + S      I       F+       ++S+ +++ +
Sbjct: 73  VYENLYAGRKCLLIVMECLDGGELFS-----RIQDRGDQAFTEREASEIMKSIGEAIQY 126

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.1 bits (150), Expect = 3e-11
 Identities = 22/106 (20%), Positives = 41/106 (38%), Gaps = 4/106 (3%)

Query: 275 LKRFSLRELQVAT-DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGEL-- 330
           LK++       A  D F     LG G FG+V   +    G+  A+K L +++    +   
Sbjct: 27  LKKWETPSQNTAQLDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIE 86

Query: 331 QFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCL 376
               E  ++       L++L       +   +V  ++  G + S L
Sbjct: 87  HTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHL 132

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 8e-11
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 284 QVATDNFSNRNILGRGGFGKVYKGRLT----DGSLVAVKRLKEER---TQGGELQFQTEV 336
           +V  +NF    +LG G +GKV+  R       G L A+K LK+             +TE 
Sbjct: 20  KVGIENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTER 79

Query: 337 EMISMAVHR-NLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVS 383
           +++        L+ L     T T+  L+  ++  G + + L      +
Sbjct: 80  QVLEHIRQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFT 127

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 2e-10
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 288 DNFSNRNILGRGGFGKVYKGR-LTDGSLVAVKRL-KEERTQGGELQFQTEVEMISMAVHR 345
             + N   +G G  G V           VA+K+L +  + Q    +   E+ ++    H+
Sbjct: 17  KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHK 76

Query: 346 NLLRLRGFCMTP 357
           N++ L       
Sbjct: 77  NIISLLNVFTPQ 88

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.5 bits (133), Expect = 3e-10
 Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 6/107 (5%)

Query: 75  DLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIP 134
            L + +L+   +  L QL  + +L+L  N +    P  L  L  L  L    N L     
Sbjct: 4   HLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVDG 60

Query: 135 TTLGKLSKLRFLRLNNNSL-MGEIPRSLTNVNSLQVLDLSNNKLTGD 180
                L +L+ L L NN L      + L +   L +L+L  N L  +
Sbjct: 61  VA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 28/115 (24%), Positives = 39/115 (33%), Gaps = 7/115 (6%)

Query: 96  QYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMG 155
           + L L   +++  V   L  L  +  LDL  N L    P  L  L  L    L  +    
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLE--VLQASDNAL 55

Query: 156 EIPRSLTNVNSLQVLDLSNNKLTG--DIPTNGSFSLFTPISFANNQLNNPPPSPP 208
           E    + N+  LQ L L NN+L     I    S      ++   N L        
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (138), Expect = 8e-10
 Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 10/92 (10%)

Query: 94  NLQYLELYSNNISGK-VPEELGNLTNLVSLDLYLNNLNG----PIPTTLGKLSKLRFLRL 148
           ++Q L++    +S     E L  L     + L    L       I + L     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 149 NNNSLMGEIPRSL-----TNVNSLQVLDLSNN 175
            +N L       +     T    +Q L L N 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (137), Expect = 1e-09
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 118 NLVSLDLYLNNLN-GPIPTTLGKLSKLRFLRLNNNSL----MGEIPRSLTNVNSLQVLDL 172
           ++ SLD+    L+       L  L + + +RL++  L      +I  +L    +L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 173 SNNKLTGDIPTNGSFSLFTP 192
            +N+L           L TP
Sbjct: 63  RSNELGDVGVHCVLQGLQTP 82

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (131), Expect = 7e-09
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 13/91 (14%)

Query: 93  TNLQYLELYSNNISGK----VPEELGNLTNLVSLDLYLNNLNGPIPTTLGK-----LSKL 143
           + L+ L L   ++S      +   L    +L  LDL  N L       L +        L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 144 RFLRLNNNSLMGEIPRSLTNV----NSLQVL 170
             L L +     E+   L  +     SL+V+
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (126), Expect = 3e-08
 Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 15/106 (14%)

Query: 57  PCTWFHVTCNSENSVTRVDLGNANLSGQ----LVSQLGQLTNLQYLELYSNNISGKVPEE 112
                       + +  + L + ++S      L + L    +L+ L+L +N +      +
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 113 LG-----NLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSL 153
           L          L  L LY    +  +   L  L K      +  SL
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK------DKPSL 456

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (123), Expect = 6e-08
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 10/92 (10%)

Query: 70  SVTRVDLGNANLSGQLVSQL-GQLTNLQYLELYSNNISGKVPEELG----NLTNLVSLDL 124
            +  +D+    LS    ++L   L   Q + L    ++    +++         L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 125 YLNNLNGPIPTTLGKL-----SKLRFLRLNNN 151
             N L       + +       K++ L L N 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (115), Expect = 5e-07
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 9/77 (11%)

Query: 115 NLTNLVSLDLYLNNLNG----PIPTTLGKLSKLRFLRLNNNSLMGEIPRSL-----TNVN 165
             + L  L L   +++      +  TL     LR L L+NN L       L         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 166 SLQVLDLSNNKLTGDIP 182
            L+ L L +   + ++ 
Sbjct: 427 LLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 10/71 (14%)

Query: 141 SKLRFLRLNNNSLMGE----IPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTP---- 192
           S LR L L +  +       +  +L   +SL+ LDLSNN L          S+  P    
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 193 --ISFANNQLN 201
             +   +   +
Sbjct: 429 EQLVLYDIYWS 439

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 6e-04
 Identities = 12/68 (17%), Positives = 18/68 (26%), Gaps = 9/68 (13%)

Query: 70  SVTRVDLGNANLSGQ----LVSQLGQLTNLQYLELYSNNISGKVPEELG-----NLTNLV 120
               V L +  L+      + S L     L  L L SN +       +          + 
Sbjct: 28  QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQ 87

Query: 121 SLDLYLNN 128
            L L    
Sbjct: 88  KLSLQNCC 95

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (131), Expect = 4e-09
 Identities = 30/154 (19%), Positives = 54/154 (35%)

Query: 47  LQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNIS 106
           L +                    ++  + L +  L          L NL +L L+ N IS
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

Query: 107 GKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNS 166
                    L +L  L L+ N +    P     L +L  L L  N+L      +L  + +
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226

Query: 167 LQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQL 200
           LQ L L++N    D      ++       +++++
Sbjct: 227 LQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEV 260

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 27/137 (19%), Positives = 40/137 (29%), Gaps = 1/137 (0%)

Query: 47  LQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANLSGQLVS-QLGQLTNLQYLELYSNNI 105
           L                       + ++DL +      +       L  L  L L    +
Sbjct: 58  LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

Query: 106 SGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVN 165
               P     L  L  L L  N L      T   L  L  L L+ N +     R+   ++
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177

Query: 166 SLQVLDLSNNKLTGDIP 182
           SL  L L  N++    P
Sbjct: 178 SLDRLLLHQNRVAHVHP 194

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (104), Expect = 8e-06
 Identities = 25/157 (15%), Positives = 44/157 (28%), Gaps = 28/157 (17%)

Query: 47  LQSWDATLVNPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNIS 106
           LQ               T     ++T + L    +S         L +L  L L+ N ++
Sbjct: 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

Query: 107 GKVPEELGNLT------------------------NLVSLDLYLNNLNGPIPTTLGKLSK 142
              P    +L                          L  L L  N             + 
Sbjct: 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAW 249

Query: 143 LRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTG 179
           L+  R +++ +   +P+ L       +  L+ N L G
Sbjct: 250 LQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 25/113 (22%), Positives = 39/113 (34%), Gaps = 5/113 (4%)

Query: 64  TCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLD 123
            C +E  VT        L   +   +      Q + L+ N IS           NL  L 
Sbjct: 7   VCYNEPKVT-TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILW 62

Query: 124 LYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEI-PRSLTNVNSLQVLDLSNN 175
           L+ N L          L+ L  L L++N+ +  + P +   +  L  L L   
Sbjct: 63  LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.4 bits (132), Expect = 4e-09
 Identities = 11/70 (15%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 296 LGRGGFGKVYKGR-LTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFC 354
           LG G F  V+  + + + + VA+K ++ ++        + E++++      +  +     
Sbjct: 21  LGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVY--TEAAEDEIKLLQRVNDADNTKEDSMG 78

Query: 355 MTPTERLLVY 364
                +LL +
Sbjct: 79  ANHILKLLDH 88

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 6e-09
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 3/101 (2%)

Query: 72  TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNG 131
             +DL   NL   +  +L     +       + +   + E   +   +  +DL  + +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEV 60

Query: 132 -PIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLD 171
             +   L + SKL+ L L    L   I  +L   ++L  L+
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 9e-07
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 68  ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGK-VPEELGNLTNLVSLDLYL 126
              V       + +   L         +Q+++L ++ I    +   L   + L +L L  
Sbjct: 22  SQGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80

Query: 127 NNLNGPIPTTLGKLSKLRFL 146
             L+ PI  TL K S L  L
Sbjct: 81  LRLSDPIVNTLAKNSNLVRL 100

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 1e-06
 Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 96  QYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMG 155
           Q L+L   N+   V   L +   +++     + ++ P+        +++ + L+N+ +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEV 60

Query: 156 E-IPRSLTNVNSLQVLDLSNNKLTGDIP 182
             +   L+  + LQ L L   +L+  I 
Sbjct: 61  STLHGILSQCSKLQNLSLEGLRLSDPIV 88

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 65  CNSENSVTRVDLGNANLSG-QLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLD 123
             S   V  +DL N+ +    L   L Q + LQ L L    +S  +   L   +NLV L+
Sbjct: 42  HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 16/103 (15%)

Query: 100 LYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPR 159
            Y N  S ++        +L  L++  N L   +P    +L +L     + N L  E+P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLI---ASFNHL-AEVPE 321

Query: 160 SLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN 202
              N   L+ L +  N L    P         P S  + ++N+
Sbjct: 322 LPQN---LKQLHVEYNPLRE-FPD-------IPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 51.4 bits (121), Expect = 9e-08
 Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 16/121 (13%)

Query: 56  NPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGN 115
                     +  + +          S ++ S      +L+ L + +N +  ++P     
Sbjct: 247 TFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR 305

Query: 116 LTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSL--MGEIPRSLTNVNSLQVLDLS 173
           L     L    N+L   +P        L+ L +  N L    +IP S+ +      L ++
Sbjct: 306 LER---LIASFNHLAE-VPELPQ---NLKQLHVEYNPLREFPDIPESVED------LRMN 352

Query: 174 N 174
           +
Sbjct: 353 S 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 68  ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLN 127
           +     ++L N  LS  L        +L+ L    N+++ ++PE   +L +L+  +  L 
Sbjct: 37  DRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 91

Query: 128 NLNGPIP 134
            L+   P
Sbjct: 92  ALSDLPP 98

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 4e-07
 Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 4/101 (3%)

Query: 50  WDATLVNPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKV 109
               L                     L   N     ++ L  L+ L  L+   N IS   
Sbjct: 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-- 187

Query: 110 PEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNN 150
              L +L NL+ + L  N ++   P  L   S L  + L N
Sbjct: 188 ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 9e-07
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 110 PEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQV 169
              L NL+ L +L    N ++   P  L  L  L  + L NN +    P  L N ++L +
Sbjct: 166 LTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFI 221

Query: 170 LDLSN 174
           + L+N
Sbjct: 222 VTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
           +  ++  G +N++         L  +  L  +   ++    E +  L NL+ L+L  N +
Sbjct: 20  NAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQI 75

Query: 130 N 130
            
Sbjct: 76  T 76

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 115 NLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSN 174
            L N + +    +N+   +  T   L  +  L      +   I   +  +N+L  L+L +
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKD 72

Query: 175 NKL 177
           N++
Sbjct: 73  NQI 75

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 91  QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNN 150
            L N   +    +N++  V +   +L  + +L  +   +       +  L+ L  L L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKD 72

Query: 151 NSLM 154
           N + 
Sbjct: 73  NQIT 76

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 3e-06
 Identities = 11/65 (16%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 115 NLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSN 174
                +  +L   ++   +  T  +L+ +  +  NN+ +       +  + ++  L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 175 NKLTG 179
           NKLT 
Sbjct: 78  NKLTD 82

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 3e-04
 Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 91  QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNN 150
                    L   +++  V +    L ++  +    +++       +  L  +  L LN 
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77

Query: 151 NSLMG 155
           N L  
Sbjct: 78  NKLTD 82

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 89  LGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLY 125
           L  LT LQ L L  N+IS      L  L NL  L+L+
Sbjct: 174 LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 7e-04
 Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 71  VTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLN 130
             + +L   +++   V+Q  +L ++  +   +++I       +  L N+  L L  N L 
Sbjct: 26  TIKDNLKKKSVTD-AVTQ-NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLT 81

Query: 131 G 131
            
Sbjct: 82  D 82

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 4e-06
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 9/137 (6%)

Query: 81  LSGQLVSQLGQLTN---LQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTL 137
           L+ +L+ Q  Q TN    + L+L    I   +      L    ++D   N +        
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGF-- 59

Query: 138 GKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFAN 197
             L +L+ L +NNN +          +  L  L L+NN L  ++      +         
Sbjct: 60  PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKS--LTY 116

Query: 198 NQLNNPPPSPPPPLQPT 214
             +   P +     +  
Sbjct: 117 LCILRNPVTNKKHYRLY 133

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 4e-06
 Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 3/61 (4%)

Query: 64  TCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLD 123
             +   S   V+    NL+  L   L    +   L L  N +       L   T L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 124 L 124
           L
Sbjct: 62  L 62

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 6e-06
 Identities = 22/80 (27%), Positives = 26/80 (32%), Gaps = 1/80 (1%)

Query: 101 YSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRS 160
             N +    P  L     L  L L  NNL       L  L  L  L L  NSL   IP+ 
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190

Query: 161 LTNVNSLQVLDLSNNKLTGD 180
               + L    L  N    +
Sbjct: 191 FFGSHLLPFAFLHGNPWLCN 210

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 90  GQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN 149
            ++ +   +     N++  +P +L    +   L L  N L      TL   ++L  L L+
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 150 NNSLM 154
              L 
Sbjct: 64  RAELT 68

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 1e-04
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 112 ELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLD 171
           E+  + + + ++    NL   +P  L K      L L+ N L      +L     L  L+
Sbjct: 5   EVSKVASHLEVNCDKRNLTA-LPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 172 LSNNK 176
           L   +
Sbjct: 62  LDRAE 66

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 3e-05
 Identities = 9/42 (21%), Positives = 14/42 (33%)

Query: 111 EELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNS 152
           +     +  V LD+    ++      L  L KLR     N  
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 8e-05
 Identities = 7/37 (18%), Positives = 11/37 (29%)

Query: 89  LGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLY 125
               +    L++    I       L NL  L +   Y
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 8e-05
 Identities = 7/44 (15%), Positives = 12/44 (27%)

Query: 133 IPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNK 176
                   S    L ++   +       L N+  L+     N K
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.6 bits (98), Expect = 5e-05
 Identities = 11/86 (12%), Positives = 26/86 (30%), Gaps = 4/86 (4%)

Query: 73  RVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGK----VPEELGNLTNLVSLDLYLNN 128
           ++D         + + L +  +++ + L  N I  +    + E + +  +L   +     
Sbjct: 11  KLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF 70

Query: 129 LNGPIPTTLGKLSKLRFLRLNNNSLM 154
                      L  L    L    L 
Sbjct: 71  TGRVKDEIPEALRLLLQALLKCPKLH 96

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.2 bits (97), Expect = 7e-05
 Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 10/109 (9%)

Query: 48  QSWDATLVNPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISG 107
            S  A  +           ++  ++    G A +         +   LQ L L  N I  
Sbjct: 232 SSALAIALKSWPNLRELGLNDCLLS--ARGAAAVVDAF--SKLENIGLQTLRLQYNEIEL 287

Query: 108 KVPEEL-----GNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN 151
                L       + +L+ L+L  N         + ++ ++   R    
Sbjct: 288 DAVRTLKTVIDEKMPDLLFLELNGNRF-SEEDDVVDEIREVFSTRGRGE 335

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 12/79 (15%)

Query: 100 LYSNNISGKVPEELGN------LTNLVSLDLYLNNLNGPIPTTL-----GKLSKLRFLRL 148
           L    +S +    + +         L +L L  N +      TL      K+  L FL L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 149 NNNSLMGEIPRSLTNVNSL 167
           N N    E    +  +  +
Sbjct: 310 NGNRF-SEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 11/68 (16%)

Query: 124 LYLNNLNGPIPTTLG------KLSKLRFLRLNNNSLMGEIPRSL-----TNVNSLQVLDL 172
           L    L+      +       +   L+ LRL  N +  +  R+L       +  L  L+L
Sbjct: 250 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 309

Query: 173 SNNKLTGD 180
           + N+ + +
Sbjct: 310 NGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 4e-04
 Identities = 8/68 (11%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 118 NLVSLDLYLNNLNG----PIPTTLGKLSKLRFLRLNNNSLMGE----IPRSLTNVNSLQV 169
           ++    L L+ +       +   L +   ++ + L+ N++  E    +  ++ +   L++
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 170 LDLSNNKL 177
            + S+   
Sbjct: 64  AEFSDIFT 71

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 5e-05
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 4/123 (3%)

Query: 89  LGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNG--PIPTTLGKLSKLRFL 146
           L        L    ++++  +     N+  L+SL+L  N L     + + + K   L+ L
Sbjct: 38  LVAQNIDVVLNR-RSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL 96

Query: 147 RLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFAN-NQLNNPPP 205
            L+ N L  E          L+ L L  N L+       ++       F    +L+    
Sbjct: 97  NLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHEL 156

Query: 206 SPP 208
            PP
Sbjct: 157 PPP 159

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 20/110 (18%), Positives = 31/110 (28%), Gaps = 2/110 (1%)

Query: 93  TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPT-TLGKLSKLRFLRLNNN 151
                L    +         L    NL  L +        +    L  L +LR L +  +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 152 SLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLN 201
            L    P +      L  L+LS N L               +  + N L+
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.9 bits (89), Expect = 5e-04
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 8/61 (13%)

Query: 68  ENSVTRVDLGNANLSGQ------LVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVS 121
             SV   +     L G       + + L  L   ++L L +NNI       L  + NL  
Sbjct: 17  RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE--KISSLSGMENLRI 74

Query: 122 L 122
           L
Sbjct: 75  L 75

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 5e-04
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 53  TLVNPCTWFHVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEE 112
            L                 +   L  ++     +  L  LT L+ L++ SN +S      
Sbjct: 132 RLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--ISV 189

Query: 113 LGNLTNLVSL 122
           L  LTNL SL
Sbjct: 190 LAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 115 NLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSN 174
            L   +   L   N+   +  +   L ++  L+ +   +   I   +  +N+L  ++ SN
Sbjct: 16  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSN 71

Query: 175 NKLTG 179
           N+LT 
Sbjct: 72  NQLTD 76

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 4/62 (6%)

Query: 70  SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNL 129
              +  LG  N++         L  +  L+     I     + +  L NL  ++   N L
Sbjct: 19  EKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQL 74

Query: 130 NG 131
             
Sbjct: 75  TD 76

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 7e-04
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 26/101 (25%)

Query: 101 YSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKL----------------- 143
             N I     +    L  L +L+LY N ++  +P +   L+ L                 
Sbjct: 86  GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145

Query: 144 ------RFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLT 178
                 R   LN  +     P  + +   +Q+ DL +++  
Sbjct: 146 WFAEWLRKKSLNGGAARCGAPSKVRD---VQIKDLPHSEFK 183

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	419
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.91
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.91
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.91
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.91
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.91
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.9
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.9
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.89
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.89
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.89
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.89
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.89
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.89
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.88
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.88
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.88
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.88
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.88
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.88
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.88
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.88
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.87
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.87
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.87
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.87
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.87
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.86
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.86
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.86
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.86
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.86
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.86
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.86
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.86
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.85
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.85
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.85
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.84
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.84
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.84
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.84
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.83
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.83
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.82
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.82
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.81
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.8
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.79
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.79
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.78
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.78
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.78
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.78
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.77
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.76
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.74
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.71
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.61
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.57
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.56
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.55
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.53
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.46
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.46
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.45
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.44
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.36
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.36
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.31
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.31
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.3
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.3
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.23
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.21
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.13
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.11
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.1
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.1
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.01
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.99
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.88
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.67
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.57
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.45
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.33
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.28
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.26
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.19
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.12
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	97.94
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.87
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.28
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.28
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	95.88
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.72
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	94.03
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	87.45

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=2.3e-30  Score=243.62  Aligned_cols=179  Identities=32%  Similarity=0.577  Sum_probs=147.1

Q ss_pred             cCChHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC--cceeEeCCCC---CEEEEEcCCCCccc--cchhhhhCCCCCC
Q 014778           24 VASNAEGDALNALKTNLADPNNVLQSWDATLVNPCT--WFHVTCNSEN---SVTRVDLGNANLSG--QLVSQLGQLTNLQ   96 (419)
Q Consensus        24 ~~~~~~~~~l~~~~~~~~~~~~~l~~w~~~~~~~c~--w~~v~c~~~~---~~~~l~L~~~~l~g--~~~~~~~~l~~L~   96 (419)
                      .|.++|.+||++||+.+.||. .+.+|..+ .|||.  |.||+|+..+   +|+.|||++|+++|  .+|++|++|++|+
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~-~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~   79 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN   79 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-GGTTCCTT-SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-cCCCCCCC-CCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccc
Confidence            367899999999999999886 68999854 69994  9999998543   79999999999998  5899999999999


Q ss_pred             EEEccc-CcccccCCccccCCCcCcEEeccccccCCC------------------------CC-----------------
Q 014778           97 YLELYS-NNISGKVPEELGNLTNLVSLDLYLNNLNGP------------------------IP-----------------  134 (419)
Q Consensus        97 ~L~L~~-N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~------------------------~p-----------------  134 (419)
                      +|+|++ |+++|.+|++|++|++|++|||++|++.+.                        +|                 
T Consensus        80 ~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n  159 (313)
T d1ogqa_          80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN  159 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccc
Confidence            999996 899999999999999999999998865421                        11                 


Q ss_pred             ------------------------------------------------------------------------------cc
Q 014778          135 ------------------------------------------------------------------------------TT  136 (419)
Q Consensus       135 ------------------------------------------------------------------------------~~  136 (419)
                                                                                                    +.
T Consensus       160 ~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~  239 (313)
T d1ogqa_         160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK  239 (313)
T ss_dssp             CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                                                          12


Q ss_pred             cCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCCCC
Q 014778          137 LGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNPP  204 (419)
Q Consensus       137 ~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~~  204 (419)
                      ++.+++|+.|+|++|+++|.+|.+|+++++|++||+++|+|+|.+|..+.++.++.+++++|+..++.
T Consensus       240 ~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEEST
T ss_pred             cccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCC
Confidence            33345677778888888888888888888888888888888888887777788888888888765543

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=3.8e-25  Score=206.07  Aligned_cols=133  Identities=25%  Similarity=0.426  Sum_probs=111.3

Q ss_pred             ccHHHHHHHhhCC---------CCCCeeCcCCceEEEEEEeC-CC---CEEEEEEccccccccCHHHHHHHHHHHhcCCC
Q 014778          278 FSLRELQVATDNF---------SNRNILGRGGFGKVYKGRLT-DG---SLVAVKRLKEERTQGGELQFQTEVEMISMAVH  344 (419)
Q Consensus       278 ~~~~~~~~~~~~~---------~~~~~lG~G~fg~Vy~~~~~-~g---~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H  344 (419)
                      ++++|+..++.+|         ...++||+|+||+||+|+++ ++   ..||||++.........++|.+|+++|++++|
T Consensus         7 ~t~~d~~~a~~~f~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~H   86 (299)
T d1jpaa_           7 FTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDH   86 (299)
T ss_dssp             GGSSSHHHHHHHHSCBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHhhhchhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCC
Confidence            4555666555544         44578999999999999974 33   36899998654444445689999999999999


Q ss_pred             CCCcceeEEEecCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          345 RNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       345 ~niv~l~g~~~~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||+++|+|..++..++|||||++|+|.++++....      .+++.++..++.|||+||+|||++   +||||
T Consensus        87 pnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~~~~------~l~~~~~~~i~~qia~gl~yLH~~---~iiHr  152 (299)
T d1jpaa_          87 PNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDG------QFTVIQLVGMLRGIAAGMKYLADM---NYVHR  152 (299)
T ss_dssp             TTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHTTTT------CSCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             CCCccEEEEEeeCCEEEEEEEecCCCcceeeeccccC------CCCHHHHHHHHHHHHHHHHHHhhC---CCccC
Confidence            9999999999999999999999999999999886542      588999999999999999999998   99998

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.6e-25  Score=199.66  Aligned_cols=121  Identities=22%  Similarity=0.379  Sum_probs=108.8

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      ++|...+.||+|+||+||+|.+.+++.||||+++..  ....++|.+|++++++++|||||+++|+|..++..++||||+
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~--~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~   82 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG--AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM   82 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSS--SSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCC--cCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEec
Confidence            356777899999999999999988889999999643  334678999999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|.++++....      .+++..+..++.|||+||+|||++   +|+||
T Consensus        83 ~~g~L~~~l~~~~~------~~~~~~~~~i~~qia~gl~~lH~~---~iiHr  125 (263)
T d1sm2a_          83 EHGCLSDYLRTQRG------LFAAETLLGMCLDVCEGMAYLEEA---CVIHR  125 (263)
T ss_dssp             TTCBHHHHHHTTTT------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCT
T ss_pred             CCCcHHHHhhcccc------CCCHHHHHHHHHHHHHHHHhhhcc---ceeec
Confidence            99999999886532      578889999999999999999999   99998

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.9e-25  Score=200.43  Aligned_cols=122  Identities=16%  Similarity=0.181  Sum_probs=106.5

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ++|+..+.||+|+||+||+|+. .+|+.||||+++........+.|.+|+++|++++|||||++++++.+++..++||||
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy   84 (271)
T d1nvra_           5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY   84 (271)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEec
Confidence            4688889999999999999997 479999999996443333455799999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.++++...       .+++.++..++.||++||+|||++   +||||
T Consensus        85 ~~gg~L~~~l~~~~-------~l~e~~~~~i~~qi~~al~ylH~~---~IiHr  127 (271)
T d1nvra_          85 CSGGELFDRIEPDI-------GMPEPDAQRFFHQLMAGVVYLHGI---GITHR  127 (271)
T ss_dssp             CTTEEGGGGSBTTT-------BCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             cCCCcHHHHHhcCC-------CCCHHHHHHHHHHHHHHHHHHHHc---CCccC
Confidence            99999999998654       688999999999999999999999   99998

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=4.7e-25  Score=204.24  Aligned_cols=128  Identities=22%  Similarity=0.364  Sum_probs=111.6

Q ss_pred             HHHHHhhCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCce
Q 014778          282 ELQVATDNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTER  360 (419)
Q Consensus       282 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~  360 (419)
                      +++...++|...+.||+|+||+||+|.+. +|+.||||+++..  ....++|.+|+.+|++++|||||+++|+|.+++..
T Consensus        11 ~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~--~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~   88 (287)
T d1opja_          11 KWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED--TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPF   88 (287)
T ss_dssp             TTBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTT--CSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             ccEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCc--cchHHHHHHHHHHHHhCCCCCEecCCccEeeCCee
Confidence            33445567888899999999999999975 6889999999643  23467899999999999999999999999999999


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||||+++|+|.+++.....     ..+++..+..++.|||+||+|||++   +||||
T Consensus        89 ~iv~E~~~~g~l~~~l~~~~~-----~~~~~~~~~~i~~qi~~gL~yLH~~---~iiHr  139 (287)
T d1opja_          89 YIITEFMTYGNLLDYLRECNR-----QEVSAVVLLYMATQISSAMEYLEKK---NFIHR  139 (287)
T ss_dssp             EEEEECCTTCBHHHHHHHSCT-----TTSCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEEeecccCcchHHHhhhccc-----cchHHHHHHHHHHHHHHHHHHHHHC---CcccC
Confidence            999999999999999975431     2688889999999999999999998   99998

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.4e-24  Score=196.27  Aligned_cols=121  Identities=23%  Similarity=0.376  Sum_probs=109.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      ++|+..+.||+|+||+||+|++++++.||||+++..  ....++|.+|+.++++++|||||+++|+|.+++..++||||+
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~--~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~   81 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG--SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYM   81 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESS--SSCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECC
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcC--cCCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEcc
Confidence            578888999999999999999988889999999643  234678999999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|.+++.....      .+++..+..++.|||+||+|||+.   +|+||
T Consensus        82 ~~g~l~~~~~~~~~------~~~~~~~~~i~~qi~~gl~~LH~~---~iiH~  124 (258)
T d1k2pa_          82 ANGCLLNYLREMRH------RFQTQQLLEMCKDVCEAMEYLESK---QFLHR  124 (258)
T ss_dssp             TTEEHHHHHHSGGG------CCCHHHHHHHHHHHHHHHHHHHHT---TBCCS
T ss_pred             CCCcHHHhhhcccc------CCcHHHHHHHHHHHHHHHHHHhhc---Ccccc
Confidence            99999999876543      577888999999999999999998   99998

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.4e-25  Score=201.04  Aligned_cols=124  Identities=21%  Similarity=0.302  Sum_probs=107.9

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ...++|...+.||+|+||+||+|.+++++.||||+++..  ....++|.+|+++|++++|||||+++|+|.+ +..++||
T Consensus        10 i~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~--~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~-~~~~iv~   86 (272)
T d1qpca_          10 VPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG--SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIIT   86 (272)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT--SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEE
T ss_pred             cCHHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccC--cCCHHHHHHHHHHHHhCCCCCEeEEEeeecc-CCeEEEE
Confidence            345678888999999999999999988889999999643  2346789999999999999999999998865 5679999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.++++....     ..+++.+++.++.|||+||+|||++   +|+||
T Consensus        87 Ey~~~g~L~~~~~~~~~-----~~l~~~~~~~i~~qi~~gl~~lH~~---~ivHr  133 (272)
T d1qpca_          87 EYMENGSLVDFLKTPSG-----IKLTINKLLDMAAQIAEGMAFIEER---NYIHR  133 (272)
T ss_dssp             ECCTTCBHHHHTTSHHH-----HTCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EeCCCCcHHHHHhhcCC-----CCCCHHHHHHHHHHHHHHHHHHHhC---CcccC
Confidence            99999999998876532     1488999999999999999999998   99998

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4e-24  Score=197.58  Aligned_cols=122  Identities=20%  Similarity=0.294  Sum_probs=103.6

Q ss_pred             hCCCCCCe-eCcCCceEEEEEEeC---CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          288 DNFSNRNI-LGRGGFGKVYKGRLT---DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       288 ~~~~~~~~-lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      ++|...+. ||+|+||+||+|.++   ++..||||+++........++|.+|+++|++++|||||+++|+|.+ +..++|
T Consensus         8 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~~lv   86 (285)
T d1u59a_           8 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLV   86 (285)
T ss_dssp             GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEE
T ss_pred             cCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeEEEE
Confidence            44555564 999999999999864   3558999999755444445789999999999999999999999975 468999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.+++.....      .+++.++..++.|||+||+|||++   +||||
T Consensus        87 mE~~~~g~L~~~l~~~~~------~l~~~~~~~i~~qi~~gL~ylH~~---~iiHr  133 (285)
T d1u59a_          87 MEMAGGGPLHKFLVGKRE------EIPVSNVAELLHQVSMGMKYLEEK---NFVHR  133 (285)
T ss_dssp             EECCTTEEHHHHHTTCTT------TSCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EEeCCCCcHHHHhhcccc------CCCHHHHHHHHHHHHHHHHHHHhC---CeecC
Confidence            999999999999875432      588999999999999999999998   99998

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2e-24  Score=198.69  Aligned_cols=123  Identities=22%  Similarity=0.334  Sum_probs=105.6

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      ...++|...+.||+|+||+||+|+++  ..||||+++... .....+.|.+|+++|++++|||||+++|++.+ +..++|
T Consensus         5 i~~~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~-~~~~lv   81 (276)
T d1uwha_           5 IPDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA-PQLAIV   81 (276)
T ss_dssp             CCTTCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEE
T ss_pred             cccccEEEEEEEeeCCCcEEEEEEEC--CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEec-cEEEEE
Confidence            34567888899999999999999874  359999996443 23335689999999999999999999999865 568999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.++++....      .+++.+++.++.|||+||+|||++   +||||
T Consensus        82 ~Ey~~~g~L~~~l~~~~~------~~~~~~~~~i~~qi~~gl~yLH~~---~ivHr  128 (276)
T d1uwha_          82 TQWCEGSSLYHHLHIIET------KFEMIKLIDIARQTAQGMDYLHAK---SIIHR  128 (276)
T ss_dssp             EECCCEEEHHHHHHTSCC------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EecCCCCCHHHHHhhccC------CCCHHHHHHHHHHHHHHHHHHhcC---CEecc
Confidence            999999999999976542      588999999999999999999998   99998

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.5e-23  Score=192.82  Aligned_cols=120  Identities=16%  Similarity=0.266  Sum_probs=107.8

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +.|...+.||+|+||+||+|.. .+|+.||||+++... ....+.+.+|+++|++++|||||++++++.+++..++||||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~-~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy   98 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQ-QPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGG-CSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEeccc-ChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEe
Confidence            4688889999999999999996 579999999985432 33456899999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.+++.+.        .+++.++..++.||+.||+|||++   +||||
T Consensus        99 ~~gg~L~~~~~~~--------~l~~~~~~~i~~qi~~aL~yLH~~---~iiHr  140 (293)
T d1yhwa1          99 LAGGSLTDVVTET--------CMDEGQIAAVCRECLQALEFLHSN---QVIHR  140 (293)
T ss_dssp             CTTCBHHHHHHHS--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             cCCCcHHHHhhcc--------CCCHHHHHHHHHHHHHHHHHHHHC---CCccc
Confidence            9999999987654        488889999999999999999999   99998

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.3e-23  Score=191.86  Aligned_cols=122  Identities=27%  Similarity=0.401  Sum_probs=109.0

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...+.||+|+||+||+|+.. +|+.||||++....  .....+.+.+|++++++++|||||++++++.+++..++||
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivm   85 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL   85 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEE
Confidence            46888899999999999999974 78999999985432  2334668999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.||++||+|||++   +||||
T Consensus        86 Ey~~~g~L~~~l~~~~-------~l~e~~~~~i~~qi~~al~~lH~~---~ivHr  130 (263)
T d2j4za1          86 EYAPLGTVYRELQKLS-------KFDEQRTATYITELANALSYCHSK---RVIHR  130 (263)
T ss_dssp             ECCTTCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             eecCCCcHHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ceeee
Confidence            9999999999998654       588999999999999999999999   99998

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=9.4e-24  Score=197.12  Aligned_cols=122  Identities=16%  Similarity=0.275  Sum_probs=104.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +.|...+.||+|+||+||+|+.. +|+.||||++...........+.+|+++|++++|||||++++++.+++..++||||
T Consensus         9 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE~   88 (307)
T d1a06a_           9 DIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQL   88 (307)
T ss_dssp             GTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             cceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence            45788899999999999999974 78999999996544333455788999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.+++....       .+++.++..++.||+.||+|||++   +||||
T Consensus        89 ~~gg~L~~~l~~~~-------~l~e~~~~~~~~qi~~al~ylH~~---~iiHr  131 (307)
T d1a06a_          89 VSGGELFDRIVEKG-------FYTERDASRLIFQVLDAVKYLHDL---GIVHR  131 (307)
T ss_dssp             CCSCBHHHHHHTCS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             cCCCcHHHhhhccc-------CCCHHHHHHHHHHHHHHHHhhhhc---eeeeE
Confidence            99999999998654       688999999999999999999999   99998

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-23  Score=194.46  Aligned_cols=122  Identities=20%  Similarity=0.269  Sum_probs=108.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc-----ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCcee
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT-----QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-----~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  361 (419)
                      +.|...+.||+|+||+||+|+. .+|+.||||+++....     ....+.|.+|+.+|++++|||||++++++.+++..+
T Consensus        10 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~   89 (293)
T d1jksa_          10 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVI   89 (293)
T ss_dssp             GTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             cCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            4578889999999999999997 4799999999853221     123568999999999999999999999999999999


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +|||||++|+|.+++....       .+++.++..++.||+.||+|||+.   +||||
T Consensus        90 iv~E~~~gg~L~~~i~~~~-------~l~~~~~~~~~~qi~~al~yLH~~---~ivHr  137 (293)
T d1jksa_          90 LILELVAGGELFDFLAEKE-------SLTEEEATEFLKQILNGVYYLHSL---QIAHF  137 (293)
T ss_dssp             EEEECCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EEEEcCCCccccchhcccc-------ccchhHHHHHHHHHHHHHHhhhhc---ceeec
Confidence            9999999999999997653       588999999999999999999999   99998

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.9e-24  Score=200.14  Aligned_cols=123  Identities=18%  Similarity=0.197  Sum_probs=109.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      .++|+..+.||+|+||+||+|+. .+|+.||+|+++........+.+.+|+.+|++++|||||+++++|.+++..++|||
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmE   84 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   84 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            46788889999999999999996 47899999999654444445689999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhh-ccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKY-SCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~-~~~p~IiHR  419 (419)
                      |+++|+|.+++++..       .+++..+..++.|+++||+|||+ +   +||||
T Consensus        85 y~~gg~L~~~l~~~~-------~l~~~~~~~~~~qil~aL~yLH~~~---~IiHR  129 (322)
T d1s9ja_          85 HMDGGSLDQVLKKAG-------RIPEQILGKVSIAVIKGLTYLREKH---KIMHR  129 (322)
T ss_dssp             CCTTEEHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHHH---CCCCS
T ss_pred             cCCCCcHHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHHHhC---CEEcc
Confidence            999999999998654       58889999999999999999996 5   79998

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.9e-24  Score=195.18  Aligned_cols=122  Identities=17%  Similarity=0.289  Sum_probs=107.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +.|+..+.||+|+||+||+|+.. +|+.||||+++.. .....+.|.+|+++|++++|||||++++++.+++..++||||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~-~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy   90 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTK-SEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEF   90 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-SSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcC-CHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEec
Confidence            45777889999999999999974 7899999999543 233456799999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.+++.+...      .+++.++..++.||++||+|||++   +||||
T Consensus        91 ~~~g~L~~~~~~~~~------~l~e~~~~~i~~qi~~gL~ylH~~---~ivHr  134 (288)
T d2jfla1          91 CAGGAVDAVMLELER------PLTESQIQVVCKQTLDALNYLHDN---KIIHR  134 (288)
T ss_dssp             CTTEEHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             CCCCcHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---CEEEe
Confidence            999999999765321      588899999999999999999999   99998

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-23  Score=192.58  Aligned_cols=115  Identities=23%  Similarity=0.291  Sum_probs=98.0

Q ss_pred             CeeCcCCceEEEEEEeC---CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccCCC
Q 014778          294 NILGRGGFGKVYKGRLT---DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVN  369 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~~~  369 (419)
                      +.||+|+||+||+|.++   +++.||||+++.... ....++|.+|+++|++++|||||+++|+|.+ +..++||||+++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE~~~~   91 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL   91 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEEcCCC
Confidence            57999999999999864   356899999964332 2224679999999999999999999999965 457899999999


Q ss_pred             CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          370 GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       370 GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|.++++...       .+++.+++.++.|||+||+|||++   +||||
T Consensus        92 g~L~~~l~~~~-------~l~~~~~~~i~~qi~~gl~ylH~~---~iiHr  131 (277)
T d1xbba_          92 GPLNKYLQQNR-------HVKDKNIIELVHQVSMGMKYLEES---NFVHR  131 (277)
T ss_dssp             EEHHHHHHHCT-------TCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             CcHHHHHhhcc-------CCCHHHHHHHHHHHHHHHhhHHhC---CcccC
Confidence            99999998654       588999999999999999999998   99998

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.5e-23  Score=193.64  Aligned_cols=122  Identities=19%  Similarity=0.315  Sum_probs=107.2

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      .++|...+.||+|+||+||+|++++++.||||+++..  ....++|.+|+.+|++++|||||+++|+|.+ +..++||||
T Consensus        16 ~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~--~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~-~~~~lv~Ey   92 (285)
T d1fmka3          16 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG--TMSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY   92 (285)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTT--SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred             HHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcc--cCCHHHHHHHHHHHHhcccCCEeEEEEEEec-CCeEEEEEe
Confidence            4678888999999999999999988888999999643  2345789999999999999999999999854 568999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|..+++....     ..++|.+++.++.|||+||+|||+.   +|+||
T Consensus        93 ~~~g~l~~~~~~~~~-----~~l~~~~~~~i~~~i~~gl~~LH~~---~ivH~  137 (285)
T d1fmka3          93 MSKGSLLDFLKGETG-----KYLRLPQLVDMAAQIASGMAYVERM---NYVHR  137 (285)
T ss_dssp             CTTCBHHHHHSHHHH-----TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             cCCCchhhhhhhccc-----ccchHHHHHHHHHHHHHHHHHHhhh---heecc
Confidence            999999999886432     1589999999999999999999998   99998

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.9e-23  Score=191.06  Aligned_cols=122  Identities=16%  Similarity=0.211  Sum_probs=108.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...+.||+|+||+||+|+. .+|+.||||+++...  .....+.+.+|+++|++++|||||++++++.+++..++||
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm   87 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL   87 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence            4688889999999999999997 479999999996432  2334567999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.|++.||+|||+.   +||||
T Consensus        88 Ey~~gg~L~~~~~~~~-------~l~e~~~~~~~~qi~~al~ylH~~---~iiHr  132 (288)
T d1uu3a_          88 SYAKNGELLKYIRKIG-------SFDETCTRFYTAEIVSALEYLHGK---GIIHR  132 (288)
T ss_dssp             CCCTTEEHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EccCCCCHHHhhhccC-------CCCHHHHHHHHHHHHHHHHhhccc---cEEcC
Confidence            9999999999988654       588999999999999999999999   99998

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.4e-23  Score=191.32  Aligned_cols=123  Identities=24%  Similarity=0.416  Sum_probs=106.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCC-C----CEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTD-G----SLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~-g----~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      +.|+..++||+|+||+||+|.+++ +    ..||||+++.........+|.+|++++++++|||||+++|+|.+.+..++
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~   86 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI   86 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEE
Confidence            457778999999999999999753 2    37999999655444445679999999999999999999999999999999


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||+++|++.+++.....      .+++.+++.++.||+.||+|||+.   +||||
T Consensus        87 v~e~~~~~~l~~~~~~~~~------~~~~~~~~~i~~~i~~gl~~lH~~---~iiHr  134 (283)
T d1mqba_          87 ITEYMENGALDKFLREKDG------EFSVLQLVGMLRGIAAGMKYLANM---NYVHR  134 (283)
T ss_dssp             EEECCTTEEHHHHHHHTTT------CSCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEEecccCcchhhhhcccc------cccHHHHHHHHHHHHHhhhhcccc---ccccC
Confidence            9999999999998875432      588999999999999999999998   99998

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=2.9e-23  Score=193.84  Aligned_cols=122  Identities=19%  Similarity=0.254  Sum_probs=106.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      +.|+..+.||+|+||+||+|+. .+|+.||||+++....  ....+.|.+|+++|++++|||||++++++.+++..++||
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~   94 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM   94 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEE
Confidence            4588889999999999999996 5789999999854322  122357999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||++|+|..++....       .+++.++..++.||++||+|||++   +||||
T Consensus        95 E~~~~g~l~~~~~~~~-------~l~e~~~~~i~~qi~~aL~yLH~~---~iiHr  139 (309)
T d1u5ra_          95 EYCLGSASDLLEVHKK-------PLQEVEIAAVTHGALQGLAYLHSH---NMIHR  139 (309)
T ss_dssp             ECCSEEHHHHHHHHTS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCC
T ss_pred             EecCCCchHHHHHhCC-------CCCHHHHHHHHHHHHHHHHHHHhC---CEecc
Confidence            9999999987765543       588999999999999999999999   99998

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.88  E-value=5.8e-23  Score=195.07  Aligned_cols=122  Identities=18%  Similarity=0.260  Sum_probs=108.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ++|...+.||+|+||+||+|+. .+|+.||||++.... ....+.+.+|+.+|++++|||||++++++.+++..++||||
T Consensus        26 ~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~-~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~  104 (350)
T d1koaa2          26 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPH-ESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  104 (350)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCS-HHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccc-hhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            4788889999999999999997 479999999995432 22356789999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |++|+|.+++.....      .+++.++..++.||+.||+|||++   +||||
T Consensus       105 ~~gg~L~~~l~~~~~------~l~e~~~~~i~~qi~~aL~ylH~~---~iiHr  148 (350)
T d1koaa2         105 MSGGELFEKVADEHN------KMSEDEAVEYMRQVCKGLCHMHEN---NYVHL  148 (350)
T ss_dssp             CCSCBHHHHHTCTTS------CBCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             CCCCCHHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHHhc---CCeee
Confidence            999999999965432      588999999999999999999999   99998

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=3.2e-23  Score=193.28  Aligned_cols=137  Identities=24%  Similarity=0.374  Sum_probs=115.1

Q ss_pred             HHHHHHHhhCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEE
Q 014778          280 LRELQVATDNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF  353 (419)
Q Consensus       280 ~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~  353 (419)
                      +.+++.++++|+..+.||+|+||+||+|+++      +++.||||+++........++|.+|+++|++++||||++++++
T Consensus         5 ~~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~   84 (301)
T d1lufa_           5 LLSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGV   84 (301)
T ss_dssp             HHHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             hhhccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceee
Confidence            3456667889999999999999999999863      4578999999755444446689999999999999999999999


Q ss_pred             EecCCceeEEeccCCCCChhhhhcCCcc-----------------ccCCCcchhhHHHHHHHHHHHHHHHHhhhccccce
Q 014778          354 CMTPTERLLVYPFMVNGSVASCLRGMFI-----------------VSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSIL  416 (419)
Q Consensus       354 ~~~~~~~~lv~e~~~~GsL~~~L~~~~~-----------------~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~I  416 (419)
                      |...+..++||||+++|+|.++++....                 .......+++.+++.++.|+++||+|||+.   +|
T Consensus        85 ~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~---~i  161 (301)
T d1lufa_          85 CAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KF  161 (301)
T ss_dssp             ECSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TC
T ss_pred             eccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccC---Ce
Confidence            9999999999999999999999974321                 112223588999999999999999999998   99


Q ss_pred             ecC
Q 014778          417 LFC  419 (419)
Q Consensus       417 iHR  419 (419)
                      |||
T Consensus       162 vHr  164 (301)
T d1lufa_         162 VHR  164 (301)
T ss_dssp             CCS
T ss_pred             Eee
Confidence            998

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.8e-23  Score=190.31  Aligned_cols=129  Identities=18%  Similarity=0.274  Sum_probs=100.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEec--CCceeEE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMT--PTERLLV  363 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~lv  363 (419)
                      ++|+..+.||+|+||+||+|+. .+|+.||||.++.... ....+.|.+|+++|++++|||||++++++.+  .+..++|
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEE
Confidence            5788889999999999999996 4799999999964432 2234569999999999999999999999975  4567999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhcc--ccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSC--VSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~--~p~IiHR  419 (419)
                      |||+++|+|.+++......   ...+++.++..++.||+.||+|||+..  ..+||||
T Consensus        84 mEy~~~g~L~~~i~~~~~~---~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHr  138 (269)
T d2java1          84 MEYCEGGDLASVITKGTKE---RQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHR  138 (269)
T ss_dssp             EECCTTEEHHHHHHHHHHH---TCCCCHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred             EecCCCCcHHHHHHhcccc---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeC
Confidence            9999999999998753211   125889999999999999999999862  1259998

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.6e-23  Score=189.66  Aligned_cols=121  Identities=22%  Similarity=0.358  Sum_probs=103.3

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecC-CceeEEec
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP-TERLLVYP  365 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-~~~~lv~e  365 (419)
                      .++|...+.||+|+||.||+|.++ |+.||||+++..   ...++|.+|++++++++|||||+++|+|.++ +..++|||
T Consensus         6 ~~~~~~~~~lG~G~fg~Vy~~~~~-~~~vAvK~i~~~---~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~e   81 (262)
T d1byga_           6 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND---ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE   81 (262)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCC---C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEEC
T ss_pred             HHHeEEeEEEecCCCeEEEEEEEC-CeEEEEEEECcH---HHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEe
Confidence            345667789999999999999985 789999999643   2356899999999999999999999999764 56799999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.++|+....     ..+++..+++++.||+.||+|||+.   +||||
T Consensus        82 y~~~g~L~~~l~~~~~-----~~l~~~~~~~i~~~i~~al~ylH~~---~ivH~  127 (262)
T d1byga_          82 YMAKGSLVDYLRSRGR-----SVLGGDCLLKFSLDVCEAMEYLEGN---NFVHR  127 (262)
T ss_dssp             CCTTEEHHHHHHHHHH-----HHCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             ccCCCCHHHHHHhcCC-----CCCCHHHHHHHHHHHHhhccccccC---ceecc
Confidence            9999999999975431     1478999999999999999999998   99998

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=6e-23  Score=188.07  Aligned_cols=120  Identities=23%  Similarity=0.344  Sum_probs=100.9

Q ss_pred             CCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEec----CCceeEEec
Q 014778          292 NRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMT----PTERLLVYP  365 (419)
Q Consensus       292 ~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~lv~e  365 (419)
                      ..+.||+|+||+||+|... +++.||+|++.... .....+.|.+|+++|++++|||||++++++.+    ....++|||
T Consensus        13 ~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivmE   92 (270)
T d1t4ha_          13 FDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTE   92 (270)
T ss_dssp             EEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEEE
T ss_pred             eeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEEe
Confidence            3467999999999999974 68899999986443 22234579999999999999999999999865    345789999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+++|+|.+++++..       .+++.++..++.||++||+|||++ .|+||||
T Consensus        93 ~~~~g~L~~~l~~~~-------~~~~~~~~~~~~qi~~gl~yLH~~-~~~IiHr  138 (270)
T d1t4ha_          93 LMTSGTLKTYLKRFK-------VMKIKVLRSWCRQILKGLQFLHTR-TPPIIHR  138 (270)
T ss_dssp             CCCSCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCS
T ss_pred             CCCCCcHHHHHhccc-------cccHHHHHHHHHHHHHHHHHHHHC-CCCEEeC
Confidence            999999999997653       588889999999999999999987 2349998

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.2e-22  Score=190.72  Aligned_cols=121  Identities=18%  Similarity=0.278  Sum_probs=107.3

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +.|...+.||+|+||+||+|... +|+.||||.++...  .....+.+|+++|+.++|||||++++++.+++..|+||||
T Consensus         5 ~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~--~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~   82 (321)
T d1tkia_           5 EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG--TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT--HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCc--ccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEec
Confidence            45777899999999999999974 78999999996432  2245688999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |++|+|.++++....      .+++.++..++.||++||+|||+.   +|+||
T Consensus        83 ~~gg~L~~~i~~~~~------~l~e~~~~~i~~qi~~al~yLH~~---~iiHr  126 (321)
T d1tkia_          83 ISGLDIFERINTSAF------ELNEREIVSYVHQVCEALQFLHSH---NIGHF  126 (321)
T ss_dssp             CCCCBHHHHHTSSSC------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             CCCCcHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHHc---CCCcc
Confidence            999999999986532      588999999999999999999999   99998

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=8.8e-23  Score=190.91  Aligned_cols=129  Identities=22%  Similarity=0.413  Sum_probs=106.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCC--EEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecCCceeEE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGS--LVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~--~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lv  363 (419)
                      ++|+..++||+|+||+||+|++. +|.  .||||+++........++|.+|+++|+++ +|||||+++|+|.+.+..++|
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV   89 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   89 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEE
Confidence            56777799999999999999975 444  57889886444444556899999999998 799999999999999999999


Q ss_pred             eccCCCCChhhhhcCCcc---------ccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFI---------VSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~---------~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.++|+....         .......+++.++..++.|||+||+|||+.   +||||
T Consensus        90 ~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~---~iiHr  151 (309)
T d1fvra_          90 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHR  151 (309)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcC---Ccccc
Confidence            999999999999986531         112234689999999999999999999999   99998

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.87  E-value=1.5e-22  Score=192.38  Aligned_cols=122  Identities=16%  Similarity=0.230  Sum_probs=107.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      +.|...+.||+|+||+||+|.. .+|+.||||+++... ....+.+.+|+++|++++|||||++++++.+++..++||||
T Consensus        29 d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~-~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~  107 (352)
T d1koba_          29 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPY-PLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF  107 (352)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-HHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred             cceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcc-hhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            4688889999999999999996 479999999985432 22345788999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+|.+++.....      .+++.++..++.||+.||+|||+.   +||||
T Consensus       108 ~~gg~L~~~~~~~~~------~l~e~~~~~i~~qi~~aL~ylH~~---~iiHR  151 (352)
T d1koba_         108 LSGGELFDRIAAEDY------KMSEAEVINYMRQACEGLKHMHEH---SIVHL  151 (352)
T ss_dssp             CCCCBHHHHTTCTTC------CBCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             CCCChHHHHHHhcCC------CCCHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            999999998775432      589999999999999999999999   99998

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.2e-22  Score=191.34  Aligned_cols=132  Identities=21%  Similarity=0.350  Sum_probs=106.6

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEeC-CC-----CEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecC
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRLT-DG-----SLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTP  357 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~~-~g-----~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  357 (419)
                      ...++|...+.||+|+||+||+|+.. .+     ..||||.+...........|.+|+.+|.++ +|||||+++|+|.++
T Consensus        34 i~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~  113 (325)
T d1rjba_          34 FPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLS  113 (325)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             CCHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeC
Confidence            34567888899999999999999963 22     369999996554445567899999999998 899999999999999


Q ss_pred             CceeEEeccCCCCChhhhhcCCcccc----------------CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIVS----------------GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~~----------------~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +..++||||+++|+|.++|+......                .....+++.+++.++.||++||+|||++   +||||
T Consensus       114 ~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~---~IiHR  188 (325)
T d1rjba_         114 GPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHR  188 (325)
T ss_dssp             SSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEET
T ss_pred             CeEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhC---Ceeec
Confidence            99999999999999999998654210                1123588999999999999999999999   99998

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.87  E-value=1e-22  Score=187.19  Aligned_cols=122  Identities=20%  Similarity=0.192  Sum_probs=107.1

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccccc--------CHHHHHHHHHHHhcCC-CCCCcceeEEEecC
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQG--------GELQFQTEVEMISMAV-HRNLLRLRGFCMTP  357 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~--------~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~  357 (419)
                      ++|...+.||+|+||+||+|+. .+|+.||||+++......        ..+.+.+|+.++++++ |||||++++++.++
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            4678889999999999999996 579999999985432111        1246889999999997 99999999999999


Q ss_pred             CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +..|+|||||++|||.++++...       .+++.++..++.||++||+|||++   +||||
T Consensus        83 ~~~~ivmE~~~~g~L~~~l~~~~-------~l~e~~~~~~~~qi~~al~~lH~~---~ivHr  134 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYLTEKV-------TLSEKETRKIMRALLEVICALHKL---NIVHR  134 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             cceEEEEEcCCCchHHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHc---CCccc
Confidence            99999999999999999997654       689999999999999999999999   99998

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=7.9e-23  Score=187.88  Aligned_cols=124  Identities=17%  Similarity=0.226  Sum_probs=105.8

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeCC----CCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCcee
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLTD----GSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  361 (419)
                      ..++|...+.||+|+||.||+|.+..    +..||||.++........+.|.+|+++|++++|||||+++|++. ++..+
T Consensus         5 ~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~   83 (273)
T d1mp8a_           5 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW   83 (273)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCE
T ss_pred             CHHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeEE
Confidence            34678888999999999999998742    35799999865444444567999999999999999999999996 46789


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++|+|.+++.....      .+++.++..++.||++||+|||+.   +||||
T Consensus        84 iv~E~~~~g~l~~~~~~~~~------~l~~~~~~~~~~qi~~gl~ylH~~---~iiHr  132 (273)
T d1mp8a_          84 IIMELCTLGELRSFLQVRKY------SLDLASLILYAYQLSTALAYLESK---RFVHR  132 (273)
T ss_dssp             EEEECCTTEEHHHHHHHTTT------TSCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEEEeccCCcHHhhhhccCC------CCCHHHHHHHHHHHHHHhhhhccc---Ceecc
Confidence            99999999999998765432      578899999999999999999999   99998

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.8e-22  Score=189.29  Aligned_cols=123  Identities=20%  Similarity=0.240  Sum_probs=110.0

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEE
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      .++|...+.||+|+||+||+|+. .+|+.||||+++...  .....+.+.+|+.+|++++|||||++++++.+++..++|
T Consensus         4 l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv   83 (337)
T d1o6la_           4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccc
Confidence            35788889999999999999996 579999999996432  233467799999999999999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||||++|+|.++++...       .+++..+..++.||+.||+|||++   +||||
T Consensus        84 ~ey~~gg~L~~~~~~~~-------~~~e~~~~~~~~qil~al~ylH~~---~iiHR  129 (337)
T d1o6la_          84 MEYANGGELFFHLSRER-------VFTEERARFYGAEIVSALEYLHSR---DVVYR  129 (337)
T ss_dssp             EECCTTCBHHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCC
T ss_pred             eeccCCCchhhhhhccc-------CCcHHHHHHHHHHHhhhhhhhhhc---Ccccc
Confidence            99999999999998754       578888999999999999999999   99998

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.7e-22  Score=185.89  Aligned_cols=118  Identities=30%  Similarity=0.445  Sum_probs=100.6

Q ss_pred             CCeeCcCCceEEEEEEeCC--C--CEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEec-CCceeEEeccC
Q 014778          293 RNILGRGGFGKVYKGRLTD--G--SLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT-PTERLLVYPFM  367 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~~~--g--~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~~~lv~e~~  367 (419)
                      .++||+|+||+||+|++.+  +  ..||||+++........++|.+|+++|++++|||||+++|+|.+ +...++|||||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~  111 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  111 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence            3689999999999999743  2  36899999654444445689999999999999999999999876 45789999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|+|.++++....      ..++.++++++.|+|+||+|||+.   +|+||
T Consensus       112 ~~g~l~~~~~~~~~------~~~~~~~~~i~~qia~gL~~lH~~---~iiHr  154 (311)
T d1r0pa_         112 KHGDLRNFIRNETH------NPTVKDLIGFGLQVAKGMKFLASK---KFVHR  154 (311)
T ss_dssp             TTCBHHHHHHCTTC------CCBHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             ecCchhhhhccccc------cchHHHHHHHHHHHHHhhhhhccc---CcccC
Confidence            99999999886542      467788899999999999999998   99998

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.1e-22  Score=190.37  Aligned_cols=132  Identities=20%  Similarity=0.260  Sum_probs=110.7

Q ss_pred             HHhhCCCCCCeeCcCCceEEEEEEe------CCCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEecC
Q 014778          285 VATDNFSNRNILGRGGFGKVYKGRL------TDGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMTP  357 (419)
Q Consensus       285 ~~~~~~~~~~~lG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~  357 (419)
                      ...++|...+.||+|+||.||+|++      .+++.||||+++.........+|.+|+.+++++ +|||||+++|+|.++
T Consensus        20 ~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~   99 (311)
T d1t46a_          20 FPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIG   99 (311)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             CCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeC
Confidence            3456788889999999999999985      246789999997554444456799999999998 699999999999999


Q ss_pred             CceeEEeccCCCCChhhhhcCCccc-----------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 TERLLVYPFMVNGSVASCLRGMFIV-----------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 ~~~~lv~e~~~~GsL~~~L~~~~~~-----------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +..++||||+++|+|.++++.....           ......+++.++..++.||++||+|||++   +||||
T Consensus       100 ~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~---~ivHr  169 (311)
T d1t46a_         100 GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHR  169 (311)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             CEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---Ceeec
Confidence            9999999999999999999864321           12223588999999999999999999999   99998

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=5.4e-22  Score=185.84  Aligned_cols=122  Identities=21%  Similarity=0.303  Sum_probs=108.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...+.||+|+||+||+|+. .+|+.||||+++...  .....+.+.+|+.+|++++|||||++++++.+++..++||
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm   83 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   83 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEe
Confidence            5688889999999999999997 479999999996432  2334568999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++..+..++.||+.||+|||++   +||||
T Consensus        84 E~~~gg~l~~~~~~~~-------~~~~~~~~~~~~qi~~al~~lH~~---~iiHr  128 (316)
T d1fota_          84 DYIEGGELFSLLRKSQ-------RFPNPVAKFYAAEVCLALEYLHSK---DIIYR  128 (316)
T ss_dssp             CCCCSCBHHHHHHHTS-------SCCHHHHHHHHHHHHHHHHHHHTT---TEECC
T ss_pred             eecCCccccccccccc-------cccccHHHHHHHHHHHhhhhhccC---cEEcc
Confidence            9999999999988665       567778888999999999999999   99998

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.8e-23  Score=191.55  Aligned_cols=134  Identities=20%  Similarity=0.320  Sum_probs=111.4

Q ss_pred             HHHHhhCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEec
Q 014778          283 LQVATDNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMT  356 (419)
Q Consensus       283 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~  356 (419)
                      ++...++|...+.||+|+||+||+|.+.      +++.||||+++..........|.+|+.++++++|||||+++|+|..
T Consensus        15 ~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~   94 (308)
T d1p4oa_          15 WEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQ   94 (308)
T ss_dssp             TBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECS
T ss_pred             eeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEec
Confidence            3344567888899999999999999863      3578999999754444445579999999999999999999999999


Q ss_pred             CCceeEEeccCCCCChhhhhcCCccc---cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          357 PTERLLVYPFMVNGSVASCLRGMFIV---SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       357 ~~~~~lv~e~~~~GsL~~~L~~~~~~---~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++..++||||+++|+|.++++.....   ......+++..+..++.|+|+||.|||+.   +|+||
T Consensus        95 ~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~---~ivHr  157 (308)
T d1p4oa_          95 GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHR  157 (308)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCS
T ss_pred             CCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhC---Ceeec
Confidence            99999999999999999999854321   12222468889999999999999999998   99998

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.8e-22  Score=186.50  Aligned_cols=122  Identities=19%  Similarity=0.298  Sum_probs=106.2

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHHHHHHh-cCCCCCCcceeEEEecCCceeEE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTEVEMIS-MAVHRNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~-~l~H~niv~l~g~~~~~~~~~lv  363 (419)
                      ++|...+.||+|+||+||+|+.. +|+.||||+++...  .....+.+..|..++. .++|||||++++++.+++..|+|
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            56888899999999999999974 79999999996432  2334556778887765 68999999999999999999999


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.++++...       .+++.++..++.||+.||+|||++   +||||
T Consensus        82 mEy~~~g~L~~~i~~~~-------~~~e~~~~~~~~qi~~al~ylH~~---~iiHr  127 (320)
T d1xjda_          82 MEYLNGGDLMYHIQSCH-------KFDLSRATFYAAEIILGLQFLHSK---GIVYR  127 (320)
T ss_dssp             EECCTTCBHHHHHHHHS-------SCCHHHHHHHHHHHHHHHHHHHHT---TCBCC
T ss_pred             EeecCCCcHHHHhhccC-------CCCHHHHHHHHHHHHHHHHHHHhC---Ceeec
Confidence            99999999999998654       578888999999999999999999   99998

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.9e-22  Score=185.45  Aligned_cols=122  Identities=22%  Similarity=0.410  Sum_probs=102.0

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCC----EEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGS----LVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLL  362 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l  362 (419)
                      ++|+..++||+|+||+||+|.+. +|+    .||||+++........++|.+|++++++++|||||+++|+|.++ ..++
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~~~   87 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL   87 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SEEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CeeE
Confidence            35888899999999999999964 444    68999987655555677899999999999999999999999875 5678


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++||+++|+|.+++.....      .+++..+..++.|||+||+|||++   +||||
T Consensus        88 v~e~~~~~~l~~~~~~~~~------~~~~~~~~~i~~qi~~gl~yLH~~---~iiHr  135 (317)
T d1xkka_          88 ITQLMPFGCLLDYVREHKD------NIGSQYLLNWCVQIAKGMNYLEDR---RLVHR  135 (317)
T ss_dssp             EEECCTTCBHHHHHHHTSS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             EEEeccCCccccccccccc------CCCHHHHHHHHHHHHHHHHHHHHc---CcccC
Confidence            8999999999998876532      588889999999999999999998   99998

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.85  E-value=3.8e-22  Score=183.66  Aligned_cols=122  Identities=19%  Similarity=0.185  Sum_probs=105.5

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccc--cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCc----e
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQ--GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTE----R  360 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----~  360 (419)
                      +.|...+.||+|+||+||+|+. .+|+.||||+++.....  ...+.|.+|++++++++|||||++++++...+.    .
T Consensus         7 drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~~   86 (277)
T d1o6ya_           7 DRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP   86 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEEE
T ss_pred             ceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCceE
Confidence            4577889999999999999996 57999999999643322  224579999999999999999999999877543    7


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+||||+++|+|.+++....       .+++.++..++.||++||+|||+.   +||||
T Consensus        87 ~lvmE~~~g~~L~~~~~~~~-------~l~~~~~~~i~~qi~~al~~lH~~---~iiHr  135 (277)
T d1o6ya_          87 YIVMEYVDGVTLRDIVHTEG-------PMTPKRAIEVIADACQALNFSHQN---GIIHR  135 (277)
T ss_dssp             EEEEECCCEEEHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EEEEECCCCCEehhhhcccC-------CCCHHHHHHHHHHHHHHHHHHHhC---CccCc
Confidence            89999999999999887654       588999999999999999999999   99998

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.1e-22  Score=183.80  Aligned_cols=131  Identities=20%  Similarity=0.278  Sum_probs=104.3

Q ss_pred             HhhCCCCCCeeCcCCceEEEEEEeC--------CCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeEEEec
Q 014778          286 ATDNFSNRNILGRGGFGKVYKGRLT--------DGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRGFCMT  356 (419)
Q Consensus       286 ~~~~~~~~~~lG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~  356 (419)
                      ..++|...+.||+|+||.||+|+..        ++..||||+++.........++.+|...+.++ +|||||+++|+|.+
T Consensus        11 ~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~   90 (299)
T d1fgka_          11 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ   90 (299)
T ss_dssp             CGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             cHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEeccccccc
Confidence            3457777899999999999999852        23479999997655444457899999999887 89999999999999


Q ss_pred             CCceeEEeccCCCCChhhhhcCCccc---------cCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          357 PTERLLVYPFMVNGSVASCLRGMFIV---------SGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       357 ~~~~~lv~e~~~~GsL~~~L~~~~~~---------~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++..++||||+++|+|.++++.....         ......+++.++..++.|||+||+|||+.   +||||
T Consensus        91 ~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~---~ivHr  159 (299)
T d1fgka_          91 DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHR  159 (299)
T ss_dssp             SSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             CCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhC---CEEee
Confidence            99999999999999999999865321         12234689999999999999999999999   99998

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=8.7e-22  Score=180.67  Aligned_cols=122  Identities=25%  Similarity=0.314  Sum_probs=95.8

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC--CC--CEEEEEEcccccc--ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCcee
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT--DG--SLVAVKRLKEERT--QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~--~g--~~vAvK~l~~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~  361 (419)
                      ++|+..+.||+|+||+||+|++.  ++  ..||||+++....  ....++|.+|+++|++++|||||+++|+|.+ +..+
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~~   86 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPMK   86 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCE
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cchh
Confidence            45777889999999999999863  33  3789999964432  2224689999999999999999999999976 4678


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++|++.+++.....      .+++..++.++.|||+||+|||++   +|+||
T Consensus        87 lv~e~~~~~~l~~~~~~~~~------~l~~~~~~~~~~qi~~gl~ylH~~---~iiHr  135 (273)
T d1u46a_          87 MVTELAPLGSLLDRLRKHQG------HFLLGTLSRYAVQVAEGMGYLESK---RFIHR  135 (273)
T ss_dssp             EEEECCTTCBHHHHHHHHGG------GSCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             eeeeeecCcchhhhhhcccC------CCCHHHHHHHHHHHHHHHHHhhhC---CEeee
Confidence            99999999999998875432      588899999999999999999998   99998

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.84  E-value=1.7e-21  Score=180.11  Aligned_cols=122  Identities=17%  Similarity=0.254  Sum_probs=107.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccc-cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEecc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEER-TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPF  366 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~  366 (419)
                      ++|...+.||+|+||+||+|+.++|+.||||+++... .....+.|.+|+.+|++++|||||++++++..++..++++||
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence            4677789999999999999999899999999996433 233357899999999999999999999999999999999999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +.++.+..+.+...       .+++.++..++.||+.||+|||+.   +||||
T Consensus        82 ~~~~~~~~~~~~~~-------~l~~~~~~~i~~qi~~~L~~LH~~---~IvHr  124 (286)
T d1ob3a_          82 LDQDLKKLLDVCEG-------GLESVTAKSFLLQLLNGIAYCHDR---RVLHR  124 (286)
T ss_dssp             CSEEHHHHHHTSTT-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             ehhhhHHHHHhhcC-------CcchhhhHHHHHHHHHHHHHhccC---cEEec
Confidence            99877777666543       688999999999999999999999   99998

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.2e-21  Score=180.41  Aligned_cols=123  Identities=22%  Similarity=0.400  Sum_probs=102.0

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      ++|...+.||+|+||+||+|+. .+|+.||||+++.... ....+.+.+|+++|++++|||||++++++.+++..++|||
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence            5788889999999999999996 5799999999964332 2235689999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+.++ +.+++.....     ..+++.++..++.||+.||+|||+.   +||||
T Consensus        82 ~~~~~-~~~~~~~~~~-----~~l~e~~~~~~~~qil~~L~yLH~~---~IiHr  126 (298)
T d1gz8a_          82 FLHQD-LKKFMDASAL-----TGIPLPLIKSYLFQLLQGLAFCHSH---RVLHR  126 (298)
T ss_dssp             CCSEE-HHHHHHHTTT-----TCCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             ecCCc-hhhhhhhhcc-----cCCCHHHHHHHHHHHHHHHHHhhcC---CEEcc
Confidence            99865 4444432211     1588999999999999999999999   99998

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3e-21  Score=183.17  Aligned_cols=122  Identities=19%  Similarity=0.256  Sum_probs=108.8

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccc--cccCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEe
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEER--TQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVY  364 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~  364 (419)
                      ++|...+.||+|+||.||+|+. .+|+.||||+++...  .....+.+.+|+++|+.++|||||++++++.+....++|+
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~  120 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence            4688889999999999999997 479999999985332  2334567999999999999999999999999999999999


Q ss_pred             ccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          365 PFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       365 e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ||+++|+|.+++....       .+++.++..++.||+.||+|||++   +||||
T Consensus       121 e~~~~g~l~~~l~~~~-------~l~e~~~~~i~~qi~~aL~yLH~~---~iiHR  165 (350)
T d1rdqe_         121 EYVAGGEMFSHLRRIG-------RFSEPHARFYAAQIVLTFEYLHSL---DLIYR  165 (350)
T ss_dssp             ECCTTCBHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             ccccccchhhhHhhcC-------CCCHHHHHHHHHHHHHHHHHHHhC---CEecC
Confidence            9999999999997654       588899999999999999999999   99998

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=3e-21  Score=184.22  Aligned_cols=122  Identities=25%  Similarity=0.374  Sum_probs=103.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccc--cccCHHHHHHH---HHHHhcCCCCCCcceeEEEecCCcee
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEER--TQGGELQFQTE---VEMISMAVHRNLLRLRGFCMTPTERL  361 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~~f~~E---~~~l~~l~H~niv~l~g~~~~~~~~~  361 (419)
                      ++|...++||+|+||.||+|+.. +|+.||||++....  .......+.+|   +.+++.++|||||++++++.+++..+
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~   83 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS   83 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEE
Confidence            57888899999999999999974 79999999985322  12233344444   67788889999999999999999999


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++|+|.+++....       .+++.++..++.||+.||+|||+.   +||||
T Consensus        84 ivmE~~~gg~L~~~l~~~~-------~~~e~~~~~~~~qi~~aL~ylH~~---~iiHr  131 (364)
T d1omwa3          84 FILDLMNGGDLHYHLSQHG-------VFSEADMRFYAAEIILGLEHMHNR---FVVYR  131 (364)
T ss_dssp             EEECCCCSCBHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EEEEecCCCcHHHHHHhcc-------cccHHHHHHHHHHHHHHHHHHHHC---Cccce
Confidence            9999999999999998654       577889999999999999999999   99998

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.7e-21  Score=179.88  Aligned_cols=117  Identities=21%  Similarity=0.282  Sum_probs=98.0

Q ss_pred             CCeeCcCCceEEEEEEe-CCCCEEEEEEcccccccc----CHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEeccC
Q 014778          293 RNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQG----GELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFM  367 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~----~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e~~  367 (419)
                      .++||+|+||+||+|+. .+|+.||||+++......    ..+.+.+|+.+|++++|||||++++++..++..++||||+
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~   82 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFM   82 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECC
T ss_pred             ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhh
Confidence            47899999999999996 479999999996432211    1346899999999999999999999999999999999999


Q ss_pred             CCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          368 VNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       368 ~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++|++..+.....       .+++.++..++.||++||+|||++   +||||
T Consensus        83 ~~~~~~~~~~~~~-------~l~~~~~~~~~~qil~aL~~lH~~---~iiHr  124 (299)
T d1ua2a_          83 ETDLEVIIKDNSL-------VLTPSHIKAYMLMTLQGLEYLHQH---WILHR  124 (299)
T ss_dssp             SEEHHHHHTTCCS-------SCCSSHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             cchHHhhhhhccc-------CCCHHHHHHHHHHHHHHHHHhhcc---ceecc
Confidence            9988776665443       577888899999999999999999   99998

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.7e-21  Score=178.93  Aligned_cols=137  Identities=22%  Similarity=0.337  Sum_probs=107.2

Q ss_pred             HHHHHHHhhCCCCCCeeCcCCceEEEEEEeC------CCCEEEEEEccccccccCHHHHHHHHHHHhcC-CCCCCcceeE
Q 014778          280 LRELQVATDNFSNRNILGRGGFGKVYKGRLT------DGSLVAVKRLKEERTQGGELQFQTEVEMISMA-VHRNLLRLRG  352 (419)
Q Consensus       280 ~~~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g  352 (419)
                      .++++...++|...+.||+|+||.||+|+..      +++.||||+++........+.|.+|...+.++ +|+|||++++
T Consensus         5 ~~~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~   84 (299)
T d1ywna1           5 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG   84 (299)
T ss_dssp             HHHHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred             CccccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeee
Confidence            3445555678888999999999999999952      34689999997554444456788898888776 7899999999


Q ss_pred             EEecCC-ceeEEeccCCCCChhhhhcCCcccc---------CCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          353 FCMTPT-ERLLVYPFMVNGSVASCLRGMFIVS---------GFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       353 ~~~~~~-~~~lv~e~~~~GsL~~~L~~~~~~~---------~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      ++..++ ..++|||||++|+|.++++......         .....+++.++..++.||++||+|||++   +||||
T Consensus        85 ~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~---~ivHr  158 (299)
T d1ywna1          85 ACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHR  158 (299)
T ss_dssp             EECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             eeccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhC---CCcCC
Confidence            987754 5799999999999999998653211         1123588999999999999999999999   99998

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=5.8e-21  Score=177.84  Aligned_cols=118  Identities=21%  Similarity=0.264  Sum_probs=97.4

Q ss_pred             CCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHH--HHHHHhcCCCCCCcceeEEEecCC----ceeE
Q 014778          289 NFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQT--EVEMISMAVHRNLLRLRGFCMTPT----ERLL  362 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~--E~~~l~~l~H~niv~l~g~~~~~~----~~~l  362 (419)
                      +|...+.||+|+||.||+|++ +|+.||||+++...    .+++.+  |+..+..++|||||+++|+|.+++    ..++
T Consensus         4 ~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~~----~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~l   78 (303)
T d1vjya_           4 TIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE----ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL   78 (303)
T ss_dssp             GEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGGG----HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred             EEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccc----hhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEE
Confidence            455678899999999999998 58899999996432    234444  445556789999999999998754    4789


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhcc-----ccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSC-----VSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~-----~p~IiHR  419 (419)
                      |||||++|+|.++|++.        .++|.++++++.|+|.||+|||+..     +++||||
T Consensus        79 v~Ey~~~g~L~~~l~~~--------~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHr  132 (303)
T d1vjya_          79 VSDYHEHGSLFDYLNRY--------TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHR  132 (303)
T ss_dssp             EEECCTTCBHHHHHHHC--------CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECS
T ss_pred             EEecccCCCHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeecc
Confidence            99999999999999864        4888999999999999999999642     4599998

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.7e-21  Score=178.65  Aligned_cols=118  Identities=17%  Similarity=0.141  Sum_probs=100.2

Q ss_pred             hCCCCC-CeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhc-CCCCCCcceeEEEec----CCce
Q 014778          288 DNFSNR-NILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISM-AVHRNLLRLRGFCMT----PTER  360 (419)
Q Consensus       288 ~~~~~~-~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~-l~H~niv~l~g~~~~----~~~~  360 (419)
                      ++|... ++||+|+||+||+|+. .+|+.||||+++.      ...+.+|++++.+ .+|||||++++++.+    ....
T Consensus        11 ~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~------~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~   84 (335)
T d2ozaa1          11 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD------CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL   84 (335)
T ss_dssp             GTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC------SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             cCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC------cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEE
Confidence            467655 4699999999999996 5799999999843      2467889998765 589999999999865    3557


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+|||||++|+|.+++.....     ..+++.++..++.||+.||+|||+.   +|+||
T Consensus        85 ~ivmEy~~gg~L~~~i~~~~~-----~~l~e~~~~~i~~qi~~al~ylH~~---~iiHR  135 (335)
T d2ozaa1          85 LIVMECLDGGELFSRIQDRGD-----QAFTEREASEIMKSIGEAIQYLHSI---NIAHR  135 (335)
T ss_dssp             EEEEECCCSEEHHHHHHSCSC-----CCEEHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EEEEECCCCCcHHHHHHhcCC-----CCcCHHHHHHHHHHHHHHHHHHHHc---CCccc
Confidence            999999999999999986431     2589999999999999999999999   99998

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2e-20  Score=173.17  Aligned_cols=122  Identities=19%  Similarity=0.278  Sum_probs=107.6

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccc-cCHHHHHHHHHHHhcCCCCCCcceeEEEecCCceeEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQ-GGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lv~e  365 (419)
                      +.|...+.||+|+||+||+|+. .+|+.||||+++..... .....+.+|+.+|+.++|||||++++++.+++..++|+|
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence            3577789999999999999996 57899999999644322 235689999999999999999999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+.++++..+++...       .+++..+..++.|+++||+|||++   +||||
T Consensus        82 ~~~~~~l~~~~~~~~-------~~~~~~~~~~~~q~~~aL~~lH~~---~IvHr  125 (292)
T d1unla_          82 FCDQDLKKYFDSCNG-------DLDPEIVKSFLFQLLKGLGFCHSR---NVLHR  125 (292)
T ss_dssp             CCSEEHHHHHHHTTT-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             ecccccccccccccc-------ccchhHHHHHHHHHHHHHHHhhcC---CEeee
Confidence            999999998887654       577888999999999999999999   99998

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.4e-20  Score=175.85  Aligned_cols=121  Identities=16%  Similarity=0.275  Sum_probs=99.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC----ceeE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT----ERLL  362 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~----~~~l  362 (419)
                      +.|...+.||+|+||+||+|+. .+|+.||||+++........+.+.+|+++|++++|||+|++++++..+.    ..++
T Consensus         8 ~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~~   87 (345)
T d1pmea_           8 PRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDVY   87 (345)
T ss_dssp             TTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCEE
T ss_pred             CCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceEE
Confidence            3577789999999999999996 5899999999965433334567999999999999999999999997653    2345


Q ss_pred             EeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          363 VYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       363 v~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +++|+.+|+|.+++...        .+++.++..++.|+++||+|||++   +||||
T Consensus        88 l~~~~~~g~L~~~l~~~--------~l~~~~i~~i~~qil~al~yLH~~---~iiHR  133 (345)
T d1pmea_          88 LVTHLMGADLYKLLKTQ--------HLSNDHICYFLYQILRGLKYIHSA---NVLHR  133 (345)
T ss_dssp             EEEECCCEEHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EEEeecCCchhhhhhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CCcCC
Confidence            56677899999999754        488999999999999999999999   99998

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2e-20  Score=171.61  Aligned_cols=122  Identities=18%  Similarity=0.285  Sum_probs=103.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccc-----cCHHHHHHHHHHHhcCC--CCCCcceeEEEecCCc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQ-----GGELQFQTEVEMISMAV--HRNLLRLRGFCMTPTE  359 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~-----~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~~~  359 (419)
                      +.|...+.||+|+||+||+|+. .+|+.||||+++.....     .....+.+|+.+|++++  |||||++++++.+++.
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            3577789999999999999996 57999999998543211     11234778999999986  8999999999999999


Q ss_pred             eeEEeccCCC-CChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVN-GSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~-GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++||||+++ +++.+++....       .+++.++..++.||++||+|||+.   +||||
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~~~-------~l~e~~~~~~~~qi~~al~~lH~~---~iiHr  134 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITERG-------ALQEELARSFFWQVLEAVRHCHNC---GVLHR  134 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHHHC-------SCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             EEEEEEeccCcchHHHHHhccC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCccc
Confidence            9999999976 67888877543       588899999999999999999999   99998

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.79  E-value=1.1e-19  Score=171.02  Aligned_cols=115  Identities=17%  Similarity=0.299  Sum_probs=100.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCC-CCCCcceeEEEecC--CceeEE
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-HRNLLRLRGFCMTP--TERLLV  363 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~--~~~~lv  363 (419)
                      ++|...+.||+|+||+||+|+. .+|+.||||+++..    ..+++.+|+++|.+++ ||||+++++++...  ...++|
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~----~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v  110 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV----KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV  110 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS----CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH----HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEE
Confidence            5788889999999999999996 57999999998532    3567899999999985 99999999998754  458899


Q ss_pred             eccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          364 YPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       364 ~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |||+++|+|.++.+          .+++.++..++.||+.||+|||++   +||||
T Consensus       111 ~e~~~~~~L~~~~~----------~l~e~~i~~i~~qil~aL~~LH~~---gIvHr  153 (328)
T d3bqca1         111 FEHVNNTDFKQLYQ----------TLTDYDIRFYMYEILKALDYCHSM---GIMHR  153 (328)
T ss_dssp             EECCCSCBGGGTTT----------SCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EeecCCCcHHHHhc----------CCCHHHHHHHHHHHHHHHHHHhhc---ccccc
Confidence            99999999987643          478888999999999999999999   99998

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.6e-19  Score=171.52  Aligned_cols=119  Identities=20%  Similarity=0.359  Sum_probs=94.7

Q ss_pred             CCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEEEecC------Ccee
Q 014778          289 NFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCMTP------TERL  361 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~~~~  361 (419)
                      +|+..++||+|+||+||+|+.. +|+.||||+++....     .+.+|+++|++++|||||++++++...      ...+
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~-----~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~   95 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR-----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN   95 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-----SCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccch-----HHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEE
Confidence            4666789999999999999974 799999999954322     234799999999999999999998653      2368


Q ss_pred             EEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          362 LVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       362 lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +||||+++|.+....+...    ....+++.++..++.||+.||+|||++   +||||
T Consensus        96 lv~Ey~~~~~~~~l~~~~~----~~~~l~~~~~~~i~~qil~aL~yLH~~---~IiHr  146 (350)
T d1q5ka_          96 LVLDYVPETVYRVARHYSR----AKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHR  146 (350)
T ss_dssp             EEEECCSEEHHHHHHHHHH----TTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECC
T ss_pred             EEEeccCCccHHHHHhhhh----ccCCCCHHHHHHHHHHHHHHHHHHHhc---CCccc
Confidence            9999999764443332111    112588999999999999999999999   99998

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.4e-19  Score=171.75  Aligned_cols=120  Identities=17%  Similarity=0.237  Sum_probs=95.7

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecCC------c
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTPT------E  359 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------~  359 (419)
                      +.|...+.||+|+||+||+|.. .+|+.||||+++.... ....+.+.+|+++|++++|||||+++++|...+      .
T Consensus        18 ~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~~   97 (346)
T d1cm8a_          18 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFTD   97 (346)
T ss_dssp             SSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCCC
T ss_pred             CcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccce
Confidence            4677789999999999999996 4799999999964322 222457899999999999999999999998754      4


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++||||+ +++|..+.+..        .+++..+..++.||+.||+|||++   +||||
T Consensus        98 ~~lv~e~~-~~~l~~~~~~~--------~l~~~~~~~~~~qi~~aL~~LH~~---~IiHr  145 (346)
T d1cm8a_          98 FYLVMPFM-GTDLGKLMKHE--------KLGEDRIQFLVYQMLKGLRYIHAA---GIIHR  145 (346)
T ss_dssp             CEEEEECC-SEEHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             EEEEEecc-cccHHHHHHhc--------cccHHHHHHHHHHHHHHHHHHHhC---CCccc
Confidence            69999999 45787776543        588999999999999999999999   99998

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.6e-19  Score=167.71  Aligned_cols=123  Identities=22%  Similarity=0.365  Sum_probs=100.7

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecC-------
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTP-------  357 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-------  357 (419)
                      .++|+..+.||+|+||+||+|+. .+|+.||||++..... ....+++.+|+++|++++|||++++++++...       
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            36788889999999999999997 5799999999854332 33456899999999999999999999998663       


Q ss_pred             -CceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          358 -TERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       358 -~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                       +..++||||+++|.+..+.....       .++..++..++.||++||+|||+.   +||||
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~~~~~-------~~~~~~~~~i~~qil~~l~~lH~~---~ivHr  141 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLSNVLV-------KFTLSEIKRVMQMLLNGLYYIHRN---KILHR  141 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHTCTTC-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECC
T ss_pred             CceEEEEEeccCCCccchhhhccc-------ccccHHHHHHHHHHHHHHHHhccC---CEEec
Confidence             35789999999887766555433       577788889999999999999999   99998

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.3e-19  Score=172.07  Aligned_cols=122  Identities=13%  Similarity=0.214  Sum_probs=103.3

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecC-----Cc
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTP-----TE  359 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~  359 (419)
                      .+.|...+.||+|+||+||+|+. .+|+.||||+++.... ....+.+.+|+++|++++|||+|++++++...     ..
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            35688889999999999999996 5799999999964322 22345789999999999999999999998653     33


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++++||+.+|+|.++++.+        .+++.++..++.||+.||+|||++   +||||
T Consensus        97 ~~~i~~~~~gg~L~~~~~~~--------~l~e~~~~~i~~qil~aL~~LH~~---giiHr  145 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKCQ--------KLTDDHVQFLIYQILRGLKYIHSA---DIIHR  145 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTTC--------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             eEEEEEeecCCchhhhcccc--------cccHHHHHHHHHHHHHHHHHHHhC---CCccc
Confidence            46778888999999999754        488899999999999999999999   99998

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=8.2e-20  Score=171.31  Aligned_cols=122  Identities=22%  Similarity=0.282  Sum_probs=105.4

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe----CCCCEEEEEEccccc---cccCHHHHHHHHHHHhcCCC-CCCcceeEEEecCCc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL----TDGSLVAVKRLKEER---TQGGELQFQTEVEMISMAVH-RNLLRLRGFCMTPTE  359 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~---~~~~~~~f~~E~~~l~~l~H-~niv~l~g~~~~~~~  359 (419)
                      ++|...+.||+|+||+||+|+.    .+|+.||||.++...   .....+.+.+|++++++++| |||+++++++.+...
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~  103 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  103 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence            5688889999999999999985    258899999996432   12234568899999999977 899999999999999


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .++++||+++|+|.+++....       .+....+..++.||+.||+|+|+.   +||||
T Consensus       104 ~~~v~e~~~~~~L~~~i~~~~-------~~~e~~~~~~~~Qi~~al~~lH~~---~ivHr  153 (322)
T d1vzoa_         104 LHLILDYINGGELFTHLSQRE-------RFTEHEVQIYVGEIVLALEHLHKL---GIIYR  153 (322)
T ss_dssp             EEEEECCCCSCBHHHHHHHHS-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             eeeeeecccccHHHHHHHhcc-------cccHHHHHHHHHHHHHHHHHhhcC---CEEec
Confidence            999999999999999998654       466778888999999999999999   99998

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.6e-19  Score=168.03  Aligned_cols=119  Identities=14%  Similarity=0.168  Sum_probs=96.9

Q ss_pred             hCCCCCCeeCcCCceEEEEEEeC-CCCEEEEEEcccccc-ccCHHHHHHHHHHHhcCCCCCCcceeEEEecC------Cc
Q 014778          288 DNFSNRNILGRGGFGKVYKGRLT-DGSLVAVKRLKEERT-QGGELQFQTEVEMISMAVHRNLLRLRGFCMTP------TE  359 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~~  359 (419)
                      +.|...++||+|+||+||+|... +|+.||||+++.... ....+.+.+|+.++++++|||||++++++...      ..
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~   96 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD   96 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence            46778899999999999999964 799999999964322 22245689999999999999999999999653      56


Q ss_pred             eeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          360 RLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       360 ~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      .|+||||+.+| +.+.+..         .+++.++..++.||+.||+|||+.   +|+||
T Consensus        97 ~~iv~Ey~~~~-l~~~~~~---------~~~~~~i~~~~~qil~gl~~LH~~---giiHr  143 (355)
T d2b1pa1          97 VYLVMELMDAN-LCQVIQM---------ELDHERMSYLLYQMLCGIKHLHSA---GIIHR  143 (355)
T ss_dssp             EEEEEECCSEE-HHHHHTS---------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCS
T ss_pred             eEEEEeccchH-HHHhhhc---------CCCHHHHHHHHHHHHHHHHHhhhc---ccccc
Confidence            79999999765 4444432         477888999999999999999999   99998

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=7.6e-19  Score=163.54  Aligned_cols=124  Identities=22%  Similarity=0.297  Sum_probs=97.1

Q ss_pred             hhCCCCCCeeCcCCceEEEEEEe-CC-CCEEEEEEccccccc-cCHHHHHHHHHHHhc---CCCCCCcceeEEEec----
Q 014778          287 TDNFSNRNILGRGGFGKVYKGRL-TD-GSLVAVKRLKEERTQ-GGELQFQTEVEMISM---AVHRNLLRLRGFCMT----  356 (419)
Q Consensus       287 ~~~~~~~~~lG~G~fg~Vy~~~~-~~-g~~vAvK~l~~~~~~-~~~~~f~~E~~~l~~---l~H~niv~l~g~~~~----  356 (419)
                      .++|...+.||+|+||+||+|+. .+ ++.||||+++..... .....+.+|+.+|+.   .+|||||++++++..    
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~   85 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   85 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccc
Confidence            46788889999999999999996 34 668999999643322 223356777777655   489999999999864    


Q ss_pred             -CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          357 -PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       357 -~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                       ....++++||+++|++.........      .+++..+..++.|+++||+|||++   +||||
T Consensus        86 ~~~~~~~~~e~~~~~~~~~~~~~~~~------~~~~~~~~~~~~qi~~aL~yLH~~---~ivHr  140 (305)
T d1blxa_          86 RETKLTLVFEHVDQDLTTYLDKVPEP------GVPTETIKDMMFQLLRGLDFLHSH---RVVHR  140 (305)
T ss_dssp             SEEEEEEEEECCSCBHHHHHHHSCTT------CSCHHHHHHHHHHHHHHHHHHHHT---TCCCC
T ss_pred             cCceEEEEEEeccCCchhhhhhccCC------CCCHHHHHHHHHHHHHHHHHHHhC---CEEec
Confidence             2457899999999877655443321      578888899999999999999999   99998

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=9.4e-19  Score=151.67  Aligned_cols=126  Identities=25%  Similarity=0.349  Sum_probs=109.6

Q ss_pred             CCCcceeEeCCC----------CCEEEEEcCCCCccccc-hhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEecc
Q 014778           57 PCTWFHVTCNSE----------NSVTRVDLGNANLSGQL-VSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLY  125 (419)
Q Consensus        57 ~c~w~~v~c~~~----------~~~~~l~L~~~~l~g~~-~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls  125 (419)
                      -|.|..|.|+..          ..++.|+|++|.|++.+ +..|..+++|+.|+|++|.+.+..+..+..+++|++|+|+
T Consensus         7 ~C~~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_           7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             EEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             EEcCCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            356889999732          36889999999998755 5668899999999999999998888899999999999999


Q ss_pred             ccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCC
Q 014778          126 LNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIP  182 (419)
Q Consensus       126 ~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p  182 (419)
                      +|++++..|..|.++++|++|+|++|+|++..|..|..+++|++|++++|++.+..+
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~  143 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccc
Confidence            999997667778999999999999999998888889999999999999999887654

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.71  E-value=8.9e-18  Score=155.25  Aligned_cols=119  Identities=15%  Similarity=0.180  Sum_probs=101.6

Q ss_pred             hCCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCC-CCCcceeEEEecCCceeEEec
Q 014778          288 DNFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVH-RNLLRLRGFCMTPTERLLVYP  365 (419)
Q Consensus       288 ~~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H-~niv~l~g~~~~~~~~~lv~e  365 (419)
                      ++|...+.||+|+||+||+|+. .+|+.||||.+.....   ..++.+|++.+..++| +|++.+++++......++|||
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~---~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme   81 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD---APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID   81 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT---SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccC---cHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEE
Confidence            4677789999999999999996 4789999998854322   2357888899999876 899999999999999999999


Q ss_pred             cCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          366 FMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       366 ~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      |+ +|+|.++++....      .+++.++..++.|++.||+|||+.   +||||
T Consensus        82 ~~-~~~l~~~~~~~~~------~~~~~~~~~i~~q~~~~l~~lH~~---giiHr  125 (293)
T d1csna_          82 LL-GPSLEDLLDLCGR------KFSVKTVAMAAKQMLARVQSIHEK---SLVYR  125 (293)
T ss_dssp             CC-CCBHHHHHHHTTT------CCCHHHHHHHHHHHHHHHHHHHTT---TEECC
T ss_pred             ec-CCCHHHHHHhhcc------chhhHHHHHHHHHHHHHHHHHHHC---Cceec
Confidence            99 5799998875432      578888999999999999999999   99998

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=1.6e-17  Score=154.06  Aligned_cols=118  Identities=15%  Similarity=0.187  Sum_probs=95.2

Q ss_pred             CCCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCCCCCCcceeEE-EecCCceeEEecc
Q 014778          289 NFSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF-CMTPTERLLVYPF  366 (419)
Q Consensus       289 ~~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~-~~~~~~~~lv~e~  366 (419)
                      .|...+.||+|+||+||+|+. .+|+.||||.+.....   ..++.+|+++++.++|+|+|..++. ..+.+..++||||
T Consensus         8 rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~---~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~   84 (299)
T d1ckia_           8 RYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK---HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL   84 (299)
T ss_dssp             TEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT---SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             EEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc---CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEE
Confidence            577789999999999999996 5789999998854322   2358899999999988876666554 4667778899999


Q ss_pred             CCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          367 MVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       367 ~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                      +. |++.+.+.....      .+++..+..++.|+++||+|||+.   +||||
T Consensus        85 ~~-~~l~~~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~iiHr  127 (299)
T d1ckia_          85 LG-PSLEDLFNFCSR------KFSLKTVLLLADQMISRIEYIHSK---NFIHR  127 (299)
T ss_dssp             CC-CBHHHHHHHTTT------CCCHHHHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             cC-CchhhhhhhccC------CCcHHHHHHHHHHHHHHHHHHHHC---Ceeec
Confidence            95 466666553321      588899999999999999999999   99998

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=1.3e-16  Score=137.83  Aligned_cols=134  Identities=23%  Similarity=0.341  Sum_probs=116.0

Q ss_pred             eeEeCCCCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccC-CccccCCCcCcEEeccccccCCCCCcccCCC
Q 014778           62 HVTCNSENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKV-PEELGNLTNLVSLDLYLNNLNGPIPTTLGKL  140 (419)
Q Consensus        62 ~v~c~~~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~-p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l  140 (419)
                      +-+|.    .+.++.++++|+ .+|..+.  +++++|+|++|.|++.+ +..|..+++|+.|+|++|++++..+..+..+
T Consensus         5 ~C~C~----~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~   77 (192)
T d1w8aa_           5 MCHCE----GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA   77 (192)
T ss_dssp             TSEEE----TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred             CCEEc----CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccc
Confidence            44564    247999999999 5777664  68999999999998755 5567899999999999999998899999999


Q ss_pred             CCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCC
Q 014778          141 SKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       141 ~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~  202 (419)
                      ++|+.|+|++|++++..|..|.++++|++|+|++|+|++..|. +..+.+++.+++++|++.+
T Consensus        78 ~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            9999999999999988888899999999999999999987775 4567888999999987653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=8.9e-16  Score=122.63  Aligned_cols=104  Identities=28%  Similarity=0.353  Sum_probs=91.3

Q ss_pred             EEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccC
Q 014778           72 TRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNN  151 (419)
Q Consensus        72 ~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N  151 (419)
                      +.|||++|+++. ++ .+..+++|++|+|++|.|+ .+|+.++.+++|+.|++++|.++ .+| .+.++++|+.|++++|
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            368999999984 44 5899999999999999998 78999999999999999999998 566 5899999999999999


Q ss_pred             cCcccC-CccCcCCCCCcEEEcccCcCCCC
Q 014778          152 SLMGEI-PRSLTNVNSLQVLDLSNNKLTGD  180 (419)
Q Consensus       152 ~l~g~~-p~~l~~l~~L~~l~l~~N~l~g~  180 (419)
                      +++... +..+..+++|+.|++++|+++..
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            998432 35689999999999999999754

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.9e-14  Score=130.55  Aligned_cols=130  Identities=28%  Similarity=0.268  Sum_probs=92.6

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      ..++.|+|++|.|++..+..|.++++|++|+|++|.|+ .+|. ++.+++|++|+|++|+++ .+|..+.++++|+.|++
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l  107 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV  107 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-cccccccccccccccccc-ccccccccccccccccc
Confidence            36889999999999877788999999999999999998 5654 578999999999999998 45777888888888888


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCC-CCccccccccccCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN-GSFSLFTPISFANNQLN  201 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~-~~~~~~~~~~~~~n~~~  201 (419)
                      ++|.+.+..+..+..+.+++.|++++|.+++..+.. ..+..+..+++++|.+.
T Consensus       108 ~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_         108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             CSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             cccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            887776555555555555555555555555433321 22334444444444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.3e-14  Score=131.66  Aligned_cols=134  Identities=28%  Similarity=0.302  Sum_probs=114.5

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..+++.|+|++|+|+. ++ .++.+++|++|+|++|.++ .+|..+..+++|+.|++++|.+.+..+..+..+.+++.|+
T Consensus        54 l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~  130 (266)
T d1p9ag_          54 YTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY  130 (266)
T ss_dssp             CTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred             cccccccccccccccc-cc-ccccccccccccccccccc-ccccccccccccccccccccccceeecccccccccccccc
Confidence            4679999999999985 44 4678999999999999998 5678899999999999999999877777788899999999


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCCCC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNNPP  204 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~~~  204 (419)
                      +++|.++...+..+..+++|+.+++++|++++.+|. ...+.+++.+++++|.+..-+
T Consensus       131 l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp  188 (266)
T d1p9ag_         131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP  188 (266)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             ccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccC
Confidence            999999876677788899999999999999987775 466788899999999887543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5e-15  Score=135.78  Aligned_cols=124  Identities=23%  Similarity=0.213  Sum_probs=61.5

Q ss_pred             CCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCC
Q 014778           79 ANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIP  158 (419)
Q Consensus        79 ~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p  158 (419)
                      +.++...+..|.++++|++|+|++|.+.+..+..+..+.+|+.+++++|++++..+..+..+++|+.|++++|++++..|
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~  170 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             cccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccch
Confidence            33443334445555555555555555544444444455555555555555553333444455555555555555554444


Q ss_pred             ccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCC
Q 014778          159 RSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       159 ~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~  202 (419)
                      ..|.++++|+.+++++|++++..|. +..+.+++.+++++|.+..
T Consensus       171 ~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~  215 (284)
T d1ozna_         171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA  215 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             hhhccccccchhhhhhccccccChhHhhhhhhccccccccccccc
Confidence            4555555555555555555544442 2334444555555555443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.53  E-value=1.9e-15  Score=140.63  Aligned_cols=110  Identities=34%  Similarity=0.465  Sum_probs=100.0

Q ss_pred             EEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEccc
Q 014778           71 VTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNN  150 (419)
Q Consensus        71 ~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~  150 (419)
                      ...++++++.+.|.+|..++.+++|+.|++++|.+++.+| +++.+++|+.|+|++|+++|.+|..++++++|++|||++
T Consensus       199 ~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~  277 (313)
T d1ogqa_         199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             cccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcC
Confidence            4468888899999999999999999999999999998765 689999999999999999999999999999999999999


Q ss_pred             CcCcccCCccCcCCCCCcEEEcccCc-CCCC-CC
Q 014778          151 NSLMGEIPRSLTNVNSLQVLDLSNNK-LTGD-IP  182 (419)
Q Consensus       151 N~l~g~~p~~l~~l~~L~~l~l~~N~-l~g~-~p  182 (419)
                      |+|+|.+|. ++++++|+.+++++|+ +.|. +|
T Consensus       278 N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp  310 (313)
T d1ogqa_         278 NNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             SEEEEECCC-STTGGGSCGGGTCSSSEEESTTSS
T ss_pred             CcccccCCC-cccCCCCCHHHhCCCccccCCCCC
Confidence            999999995 6889999999999998 6665 44

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.51  E-value=4.2e-14  Score=130.75  Aligned_cols=73  Identities=29%  Similarity=0.362  Sum_probs=63.2

Q ss_pred             CCcceeEeCCC----------CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEecccc
Q 014778           58 CTWFHVTCNSE----------NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLN  127 (419)
Q Consensus        58 c~w~~v~c~~~----------~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N  127 (419)
                      |.|.+|.|+..          ..++.|+|++|+|+...+..|.++++|++|++++|.+....|..|.++++|++|++++|
T Consensus        10 c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             ecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            67999999741          45889999999999766678999999999999999999777888999999999999988


Q ss_pred             ccC
Q 014778          128 NLN  130 (419)
Q Consensus       128 ~l~  130 (419)
                      +++
T Consensus        90 ~l~   92 (305)
T d1xkua_          90 QLK   92 (305)
T ss_dssp             CCS
T ss_pred             ccC
Confidence            765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=2.9e-14  Score=113.64  Aligned_cols=102  Identities=26%  Similarity=0.353  Sum_probs=88.6

Q ss_pred             CEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccC
Q 014778           96 QYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNN  175 (419)
Q Consensus        96 ~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N  175 (419)
                      +.|+|++|+++ .+| .+..+++|++||+++|+++ .+|+.++.+++|+.|++++|+++ .+| .+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCC
Confidence            57999999998 666 5899999999999999998 78999999999999999999998 455 4899999999999999


Q ss_pred             cCCCCCC--CCCCccccccccccCCCCCC
Q 014778          176 KLTGDIP--TNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       176 ~l~g~~p--~~~~~~~~~~~~~~~n~~~~  202 (419)
                      +++....  ....+..++.+++++|++..
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            9986432  34556788899999998764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.1e-14  Score=133.55  Aligned_cols=134  Identities=20%  Similarity=0.211  Sum_probs=119.3

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|+|++|.+.+..+..+....+|+.+++++|.|++..+..|..+++|+.|++++|++++..|..+.++++|+.+++
T Consensus       105 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l  184 (284)
T d1ozna_         105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (284)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhh
Confidence            57899999999998877888899999999999999999666677889999999999999999777788899999999999


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-CCCccccccccccCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-NGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~~~~~~~~~~~n~~~~  202 (419)
                      ++|++++..|..|.++++|++||+++|++++.+|. ...+..++.+++++|++.+
T Consensus       185 ~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            99999998899999999999999999999987763 4567788899999998765

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.46  E-value=5.7e-14  Score=120.85  Aligned_cols=106  Identities=8%  Similarity=-0.021  Sum_probs=80.6

Q ss_pred             CCeeCcCCceEEEEEEeCCCCEEEEEEccccccc-----------------cCHHHHHHHHHHHhcCCCCCCcceeEEEe
Q 014778          293 RNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQ-----------------GGELQFQTEVEMISMAVHRNLLRLRGFCM  355 (419)
Q Consensus       293 ~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~-----------------~~~~~f~~E~~~l~~l~H~niv~l~g~~~  355 (419)
                      .+.||+|+||+||+|+..+|+.||||.++.....                 .....+.+|...+.++.|.+++..+++. 
T Consensus         5 g~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~-   83 (191)
T d1zara2           5 GKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE-   83 (191)
T ss_dssp             EEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE-
T ss_pred             CCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec-
Confidence            4789999999999999888999999987532110                 0013356788899999999999887653 


Q ss_pred             cCCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhccccceecC
Q 014778          356 TPTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYSCVSILLFC  419 (419)
Q Consensus       356 ~~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~~~p~IiHR  419 (419)
                         ..+++|||++++.+.+              ++......++.|+++|++|||++   +|+||
T Consensus        84 ---~~~lvme~~~~~~~~~--------------l~~~~~~~i~~ql~~~l~~lH~~---giiHr  127 (191)
T d1zara2          84 ---GNAVLMELIDAKELYR--------------VRVENPDEVLDMILEEVAKFYHR---GIVHG  127 (191)
T ss_dssp             ---TTEEEEECCCCEEGGG--------------CCCSCHHHHHHHHHHHHHHHHHT---TEECS
T ss_pred             ---CCEEEEEeeccccccc--------------hhhHHHHHHHHHHHHHHHHHhhC---CEEEc
Confidence               2379999999865433              22233456899999999999999   99998

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.2e-14  Score=117.21  Aligned_cols=107  Identities=23%  Similarity=0.238  Sum_probs=87.0

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcc-cCCCCCCCEEE
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTT-LGKLSKLRFLR  147 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~l~~L~~l~  147 (419)
                      .++++|||++|+|+. ++..+..+++|+.|+|++|.|+ .++ .+..+++|++|++++|+++. +|+. +..+++|+.|+
T Consensus        18 ~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~-l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          18 VRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELI   93 (162)
T ss_dssp             TSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEEE
T ss_pred             CcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccC-CCccccccccccccce
Confidence            357889999999985 4666678899999999999998 564 58889999999999999984 5544 46789999999


Q ss_pred             cccCcCcccCC--ccCcCCCCCcEEEcccCcCCCC
Q 014778          148 LNNNSLMGEIP--RSLTNVNSLQVLDLSNNKLTGD  180 (419)
Q Consensus       148 l~~N~l~g~~p--~~l~~l~~L~~l~l~~N~l~g~  180 (419)
                      |++|+++. ++  ..+..+++|+.|++++|+++..
T Consensus        94 L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~~~  127 (162)
T d1a9na_          94 LTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNK  127 (162)
T ss_dssp             CCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGS
T ss_pred             eccccccc-cccccccccccccchhhcCCCccccc
Confidence            99999873 33  4678889999999999988653

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=5.1e-14  Score=133.50  Aligned_cols=121  Identities=16%  Similarity=0.197  Sum_probs=89.9

Q ss_pred             CCCCCeeCcCCceEEEEEEe-CCCCEEEEEEccccccccCHHHHHHHHHHHhcCC-----------CCCCcceeEEEec-
Q 014778          290 FSNRNILGRGGFGKVYKGRL-TDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-----------HRNLLRLRGFCMT-  356 (419)
Q Consensus       290 ~~~~~~lG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-----------H~niv~l~g~~~~-  356 (419)
                      |...+.||+|+||+||+|+. .+|+.||||+++...  ...+.+.+|+.++..++           |+|||++++++.. 
T Consensus        15 Y~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~--~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~   92 (362)
T d1q8ya_          15 YILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK--VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHK   92 (362)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH--HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEE
T ss_pred             EEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc--cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeec
Confidence            77789999999999999996 579999999996432  12356788998887765           5789999988865 


Q ss_pred             -CCceeEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhh-ccccceecC
Q 014778          357 -PTERLLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKY-SCVSILLFC  419 (419)
Q Consensus       357 -~~~~~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~-~~~p~IiHR  419 (419)
                       ....+++++++..+.........    .....+++..+..++.||++||+|||+ .   +|+||
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~i~~qil~al~~lh~~~---~IvHr  150 (362)
T d1q8ya_          93 GPNGVHVVMVFEVLGENLLALIKK----YEHRGIPLIYVKQISKQLLLGLDYMHRRC---GIIHT  150 (362)
T ss_dssp             ETTEEEEEEEECCCCEEHHHHHHH----TTTSCCCHHHHHHHHHHHHHHHHHHHHTT---CEECS
T ss_pred             cccceeeeeeeccccccccccccc----ccccCCcHHHHHHHHHHHHHHHHHHhhhc---Ccccc
Confidence             34556666666554432222211    111257778889999999999999997 6   89998

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.3e-13  Score=115.30  Aligned_cols=112  Identities=20%  Similarity=0.183  Sum_probs=93.4

Q ss_pred             hhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCC
Q 014778           87 SQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNS  166 (419)
Q Consensus        87 ~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~  166 (419)
                      +.+.+...|++|+|++|.|+ .+|..+..+++|+.|||++|+++ .++ .+..+++|++|++++|+++...+..+..+++
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             HhccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccc
Confidence            34667889999999999998 67877788999999999999998 665 5899999999999999998655555678999


Q ss_pred             CcEEEcccCcCCCC--CCCCCCccccccccccCCCCC
Q 014778          167 LQVLDLSNNKLTGD--IPTNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       167 L~~l~l~~N~l~g~--~p~~~~~~~~~~~~~~~n~~~  201 (419)
                      |+.|++++|+++..  +.....++.++.+++++|++.
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cccceeccccccccccccccccccccchhhcCCCccc
Confidence            99999999999853  223455677888899988764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.3e-12  Score=108.23  Aligned_cols=103  Identities=22%  Similarity=0.166  Sum_probs=83.4

Q ss_pred             EcCCCCccccchhhhhCCCCCCEEEcccC-cccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcC
Q 014778           75 DLGNANLSGQLVSQLGQLTNLQYLELYSN-NISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSL  153 (419)
Q Consensus        75 ~L~~~~l~g~~~~~~~~l~~L~~L~L~~N-~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l  153 (419)
                      +++++++. .+|..+..+++|++|++++| .++..-+..|.++++|+.|+|++|+++..-|..|..+++|++|+|++|++
T Consensus        14 ~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l   92 (156)
T d2ifga3          14 RCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (156)
T ss_dssp             ECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             EecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCC
Confidence            33444554 35777889999999999766 58855556799999999999999999966677799999999999999999


Q ss_pred             cccCCccCcCCCCCcEEEcccCcCCC
Q 014778          154 MGEIPRSLTNVNSLQVLDLSNNKLTG  179 (419)
Q Consensus       154 ~g~~p~~l~~l~~L~~l~l~~N~l~g  179 (419)
                      + .+|.......+|+.|++++|++..
T Consensus        93 ~-~l~~~~~~~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          93 E-SLSWKTVQGLSLQELVLSGNPLHC  117 (156)
T ss_dssp             S-CCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             c-ccChhhhccccccccccCCCcccC
Confidence            8 666655555579999999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.36  E-value=1.9e-12  Score=111.82  Aligned_cols=125  Identities=29%  Similarity=0.481  Sum_probs=88.9

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|+|++|.+++..|  ++++++|++|++++|.+. .+| .+..+++|+.|++++|.+.. + ..+..+++|+.|++
T Consensus        62 ~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~~-~-~~~~~l~~L~~L~l  135 (199)
T d2omxa2          62 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQITD-I-DPLKNLTNLNRLEL  135 (199)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEEC
T ss_pred             CCcCcCccccccccCccc--ccCCcccccccccccccc-ccc-cccccccccccccccccccc-c-cccchhhhhHHhhh
Confidence            467778888887776432  777888888888888776 344 37777788888888777763 2 34677788888888


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      ++|++. .+| .+..+++|+.|++++|++++. +....+++++.+++++|++..
T Consensus       136 ~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l-~~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         136 SSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDL-KPLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CSSCCC-CCG-GGTTCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC
T ss_pred             hhhhhc-ccc-cccccccccccccccccccCC-ccccCCCCCCEEECCCCCCCC
Confidence            888776 333 477778888888888888764 345566777788888877654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4.1e-12  Score=105.18  Aligned_cols=111  Identities=19%  Similarity=0.072  Sum_probs=92.9

Q ss_pred             CCCCCCEEEcccCcccccCCccccCCCcCcEEeccccc-cCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcE
Q 014778           91 QLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNN-LNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQV  169 (419)
Q Consensus        91 ~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~-l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~  169 (419)
                      .....+.++.+++.+. .+|..+..+++|+.|++++|+ ++..-+..|.++++|+.|+|++|+++...|..|..+++|++
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            3344567999999998 789999999999999998775 77444567999999999999999999777888999999999


Q ss_pred             EEcccCcCCCCCCCCCCccccccccccCCCCCC
Q 014778          170 LDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       170 l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      |+|++|+++...+.......+..+++++|++.+
T Consensus        85 L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQGLSLQELVLSGNPLHC  117 (156)
T ss_dssp             EECCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             eeccCCCCcccChhhhccccccccccCCCcccC
Confidence            999999999665554444568889999998764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.31  E-value=4.9e-12  Score=109.17  Aligned_cols=126  Identities=25%  Similarity=0.415  Sum_probs=106.5

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|++++|+++. + +.+..+++|++|+|++|.+++ +++ +.++++|++|++++|.+. .+| .+.++++|+.|++
T Consensus        40 ~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEEC
T ss_pred             cCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccC-ccc-ccCCcccccccccccccc-ccc-ccccccccccccc
Confidence            468899999999985 3 358899999999999999996 443 899999999999999987 555 4889999999999


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNNP  203 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~~  203 (419)
                      ++|.+...  ..+..+++|+.|++++|+++. +|....+..+..+.+.+|.+...
T Consensus       114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~~l~~~~~L~~L~l~~n~l~~l  165 (199)
T d2omxa2         114 FNNQITDI--DPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLNFSSNQVTDL  165 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCCCCC
T ss_pred             cccccccc--cccchhhhhHHhhhhhhhhcc-cccccccccccccccccccccCC
Confidence            99998753  347889999999999999975 45566778888999999987653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.30  E-value=5.3e-12  Score=109.96  Aligned_cols=125  Identities=26%  Similarity=0.375  Sum_probs=92.3

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|+|++|.+++. + .++.+++|++|++++|.++ .+| .+..+++|+.|++++|.+. .+ ..+..+++|+.+++
T Consensus        68 ~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~  141 (210)
T d1h6ta2          68 PNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYL  141 (210)
T ss_dssp             TTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEEC
T ss_pred             CCCCEEeCCCccccCc-c-ccccCcccccccccccccc-ccc-ccccccccccccccccccc-cc-cccccccccccccc
Confidence            4678888888888763 3 3677888888888888887 355 4777888888888888775 33 35677788888888


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      ++|.+++  +..+..+++|+.+++++|++++. +....+++++.+++++|.+..
T Consensus       142 ~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         142 GNNKITD--ITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             CSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCB
T ss_pred             ccccccc--ccccccccccccccccccccccc-ccccCCCCCCEEECCCCCCCC
Confidence            8888764  33467788888888888888764 445667778888888887653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.30  E-value=5.4e-12  Score=116.25  Aligned_cols=130  Identities=25%  Similarity=0.352  Sum_probs=108.7

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      ..++.+++++|+++. +|..  .+++|+.|++++|.+++..|..+..++.++.|++++|.+++..|..+.++++|++|+|
T Consensus       150 ~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L  226 (305)
T d1xkua_         150 KKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL  226 (305)
T ss_dssp             TTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred             cccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeec
Confidence            468899999999874 4443  3678999999999999999999999999999999999999877888899999999999


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCC-------CCCccccccccccCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPT-------NGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~-------~~~~~~~~~~~~~~n~~~~  202 (419)
                      ++|+++ .+|..+.++++|++|++++|+++.....       ......++.+++.+|++..
T Consensus       227 ~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         227 NNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             CSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             cccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            999998 7888999999999999999999853221       1233567778899998764

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.23  E-value=1.1e-11  Score=117.48  Aligned_cols=124  Identities=30%  Similarity=0.415  Sum_probs=68.3

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      ..++.|++++|.+++..  .++.+++|++|++++|.+++. + .+..+..++.++++.|.+++ + ..+..+++++.|++
T Consensus       241 ~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~-~-~~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~l  314 (384)
T d2omza2         241 TNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNI-S-PLAGLTALTNLELNENQLED-I-SPISNLKNLTYLTL  314 (384)
T ss_dssp             TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCSC-C-GGGGGCTTCSEEEC
T ss_pred             cccchhccccCccCCCC--cccccccCCEeeccCcccCCC-C-cccccccccccccccccccc-c-cccchhcccCeEEC
Confidence            46788888888888744  377788888888888888743 2 24445555555555555543 1 22444445555555


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~  201 (419)
                      ++|++++..  .+..+++|+.|++++|++++ +|....+++++.+++++|++.
T Consensus       315 s~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         315 YFNNISDIS--PVSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             CSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCc--ccccCCCCCEEECCCCCCCC-ChhHcCCCCCCEEECCCCcCC
Confidence            555554322  14444555555555555443 233333444444555554443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.21  E-value=1.9e-11  Score=106.37  Aligned_cols=121  Identities=27%  Similarity=0.341  Sum_probs=102.0

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..+++.|++++|.+++ +| .+..+++|+.|++++|.+. .+ +.+..+++|+.+++++|.+++  +..+.++++|+.++
T Consensus        89 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~  162 (210)
T d1h6ta2          89 LKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLS  162 (210)
T ss_dssp             CTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEE
T ss_pred             Cccccccccccccccc-cc-ccccccccccccccccccc-cc-ccccccccccccccccccccc--cccccccccccccc
Confidence            4579999999999986 44 6899999999999999987 34 468899999999999999974  34578899999999


Q ss_pred             cccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccC
Q 014778          148 LNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFAN  197 (419)
Q Consensus       148 l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~  197 (419)
                      +++|++++ ++ .+.++++|+.|++++|+++. +|....+++++.+++++
T Consensus       163 l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         163 LEDNQISD-IV-PLAGLTKLQNLYLSKNHISD-LRALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEEEE
T ss_pred             cccccccc-cc-cccCCCCCCEEECCCCCCCC-ChhhcCCCCCCEEEccC
Confidence            99999985 44 38899999999999999985 56667777788777653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.13  E-value=9.3e-11  Score=103.05  Aligned_cols=128  Identities=24%  Similarity=0.420  Sum_probs=85.4

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCC-------------
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIP-------------  134 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p-------------  134 (419)
                      ..+++.|++++|.+++..|  +..+++|++|++++|.++ .++ .+..+++|+.+++++|...+..+             
T Consensus        62 l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~  137 (227)
T d1h6ua2          62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD  137 (227)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECC
T ss_pred             CCCCcEeecCCceeecccc--cccccccccccccccccc-ccc-cccccccccccccccccccccchhccccchhhhhch
Confidence            3567778888877776433  777777777777777776 343 46677777777777776553211             


Q ss_pred             -------cccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCC
Q 014778          135 -------TTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       135 -------~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                             ..+.++++|+.|++++|.+++..  .+.++++|+.|++++|++++ +|....+.+++.+++++|++..
T Consensus       138 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~~l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         138 LNQITNISPLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             SSCCCCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTSCCCB
T ss_pred             hhhhchhhhhccccccccccccccccccch--hhcccccceecccCCCccCC-ChhhcCCCCCCEEECcCCcCCC
Confidence                   12345566777777777765332  36777788888888887775 4445566777777887777654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.11  E-value=9e-11  Score=110.97  Aligned_cols=125  Identities=30%  Similarity=0.394  Sum_probs=95.8

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|++++|.++..  +.+..+++|+.|++++|.+++..  .+..+++|+.|++++|++++. + .+.+++.++.+++
T Consensus       219 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~-~-~~~~~~~l~~l~~  292 (384)
T d2omza2         219 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNI-S-PLAGLTALTNLEL  292 (384)
T ss_dssp             TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEEC
T ss_pred             CCCCEEECCCCCCCCc--chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCC-C-ccccccccccccc
Confidence            4678888888888752  46778888888888888888543  277888888888888888743 3 3677888888888


Q ss_pred             ccCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCCC
Q 014778          149 NNNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       149 ~~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      +.|.+++  +..+..+++++.|++++|++++.. ....+++++.+++++|.+..
T Consensus       293 ~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~~  343 (384)
T d2omza2         293 NENQLED--ISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNKVSD  343 (384)
T ss_dssp             CSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSCCCC
T ss_pred             ccccccc--ccccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCCCCC
Confidence            8888875  234778888888888888888754 35567778888888887764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.10  E-value=6.6e-13  Score=114.68  Aligned_cols=111  Identities=26%  Similarity=0.307  Sum_probs=56.9

Q ss_pred             chhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCC
Q 014778           85 LVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNV  164 (419)
Q Consensus        85 ~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l  164 (419)
                      ++..+..|++|++|+|++|.|+ .++ .+..+++|+.|+|++|+++ .+|.....+++|+.|++++|+++. ++ .+..+
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l  114 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKL  114 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-HH-HHHHH
T ss_pred             hhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-cc-ccccc
Confidence            3445555555555555555555 343 3555555555555555554 444444444455555555555552 22 24455


Q ss_pred             CCCcEEEcccCcCCCCC--CCCCCccccccccccCCCC
Q 014778          165 NSLQVLDLSNNKLTGDI--PTNGSFSLFTPISFANNQL  200 (419)
Q Consensus       165 ~~L~~l~l~~N~l~g~~--p~~~~~~~~~~~~~~~n~~  200 (419)
                      ++|+.|++++|+++...  .....+..++.+++++|++
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCcc
Confidence            55555555555554321  1223444555555555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.10  E-value=4.9e-13  Score=115.47  Aligned_cols=111  Identities=25%  Similarity=0.320  Sum_probs=94.4

Q ss_pred             CCCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEE
Q 014778           68 ENSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLR  147 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~  147 (419)
                      ..+++.|+|++|+|+. ++ .+..+++|++|+|++|.|+ .+|..+..+++|+.|++++|+++ .++ .+.++++|+.|+
T Consensus        47 L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~  121 (198)
T d1m9la_          47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC-CHH-HHHHHHHSSEEE
T ss_pred             ccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccc-ccc-cccccccccccc
Confidence            3578999999999985 44 5999999999999999998 68877777789999999999998 454 478899999999


Q ss_pred             cccCcCcccCC--ccCcCCCCCcEEEcccCcCCCCCCCC
Q 014778          148 LNNNSLMGEIP--RSLTNVNSLQVLDLSNNKLTGDIPTN  184 (419)
Q Consensus       148 l~~N~l~g~~p--~~l~~l~~L~~l~l~~N~l~g~~p~~  184 (419)
                      |++|+++. ++  ..+..+++|+.|++++|+++...+..
T Consensus       122 L~~N~i~~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~  159 (198)
T d1m9la_         122 MSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKEN  159 (198)
T ss_dssp             ESEEECCC-HHHHHHHTTTTTCSEEEECSSHHHHHHCTT
T ss_pred             cccchhcc-ccccccccCCCccceeecCCCccccCcccc
Confidence            99999974 33  46899999999999999987665543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.8e-10  Score=99.18  Aligned_cols=86  Identities=21%  Similarity=0.282  Sum_probs=44.9

Q ss_pred             CCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCc-ccCCCCCCCEEEcc-cCcCcccCCccCcCCCCCcEEE
Q 014778           94 NLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPT-TLGKLSKLRFLRLN-NNSLMGEIPRSLTNVNSLQVLD  171 (419)
Q Consensus        94 ~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~-~~~~l~~L~~l~l~-~N~l~g~~p~~l~~l~~L~~l~  171 (419)
                      ++++|+|++|.|+...+..|.++++|++|++++|.+...+|. .|.++++++.+++. .|++....+..|..+++|+.++
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~  109 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  109 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence            455566666555532222455555566666665555543332 34455555555543 2445444445555555566666


Q ss_pred             cccCcCCC
Q 014778          172 LSNNKLTG  179 (419)
Q Consensus       172 l~~N~l~g  179 (419)
                      +++|.++.
T Consensus       110 l~~~~l~~  117 (242)
T d1xwdc1         110 ISNTGIKH  117 (242)
T ss_dssp             EESCCCCS
T ss_pred             cchhhhcc
Confidence            65555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.99  E-value=1.2e-09  Score=95.72  Aligned_cols=126  Identities=25%  Similarity=0.392  Sum_probs=92.5

Q ss_pred             CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEc
Q 014778           69 NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRL  148 (419)
Q Consensus        69 ~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l  148 (419)
                      .+++.|++.+|+++. + +.+..+++|++|+|++|.+++..|  +..+++|+++++++|.++ .++ .+..+++|+.+++
T Consensus        41 ~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-ccc-ccccccccccccc
Confidence            468999999999985 4 468999999999999999996433  899999999999999997 555 5889999999999


Q ss_pred             ccCcCcccCCc--------------------cCcCCCCCcEEEcccCcCCCCCCCCCCccccccccccCCCCC
Q 014778          149 NNNSLMGEIPR--------------------SLTNVNSLQVLDLSNNKLTGDIPTNGSFSLFTPISFANNQLN  201 (419)
Q Consensus       149 ~~N~l~g~~p~--------------------~l~~l~~L~~l~l~~N~l~g~~p~~~~~~~~~~~~~~~n~~~  201 (419)
                      ++|...+..+-                    .+..+++|+.|++++|.+++..+ ...+.+++.+++++|.+.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~  186 (227)
T d1h6ua2         115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKIS  186 (227)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred             ccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchh-hcccccceecccCCCccC
Confidence            99987653321                    12334456666666665554322 344555666666666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=3.7e-09  Score=93.30  Aligned_cols=145  Identities=13%  Similarity=0.151  Sum_probs=107.6

Q ss_pred             CCcceeEeCCC----------CCEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCc-cccCCCcCcEEeccc
Q 014778           58 CTWFHVTCNSE----------NSVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPE-ELGNLTNLVSLDLYL  126 (419)
Q Consensus        58 c~w~~v~c~~~----------~~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~-~~~~l~~L~~L~ls~  126 (419)
                      |.+..|.|...          ..+++|+|++|.++...+..|.++++|++|+|++|.+...+|. .|..++.++.|++..
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            56788888631          2689999999999876666799999999999999999876654 678899999999864


Q ss_pred             -cccCCCCCcccCCCCCCCEEEcccCcCcccCC-ccCcCCCCCcEEEcccCcCCCCCCC-CCCc-cccccccccCCCCCC
Q 014778          127 -NNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIP-RSLTNVNSLQVLDLSNNKLTGDIPT-NGSF-SLFTPISFANNQLNN  202 (419)
Q Consensus       127 -N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p-~~l~~l~~L~~l~l~~N~l~g~~p~-~~~~-~~~~~~~~~~n~~~~  202 (419)
                       |++....|..+.++++|+.+++++|.+....+ ..+..+..+..+..+++++....+. ...+ ..+..+++.+|.+..
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~  167 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  167 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             cccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc
Confidence             77877777888999999999999999974322 2345566676667777776543322 1222 245567777776653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.87  E-value=7.6e-09  Score=95.92  Aligned_cols=101  Identities=29%  Similarity=0.375  Sum_probs=82.4

Q ss_pred             CEEEEEcCCCCccccchhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcc
Q 014778           70 SVTRVDLGNANLSGQLVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLN  149 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~  149 (419)
                      +++.|||++++++. +|+.   +++|++|+|++|+|+ .+|+.+   .+|+.|++++|+++ .++.-   .++|++|+++
T Consensus        39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence            57899999999984 6753   568999999999999 888764   57899999999997 55532   2469999999


Q ss_pred             cCcCcccCCccCcCCCCCcEEEcccCcCCCCCCCC
Q 014778          150 NNSLMGEIPRSLTNVNSLQVLDLSNNKLTGDIPTN  184 (419)
Q Consensus       150 ~N~l~g~~p~~l~~l~~L~~l~l~~N~l~g~~p~~  184 (419)
                      +|.+. .+|. ++.+++|+.|++++|.++..++..
T Consensus       107 ~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~~  139 (353)
T d1jl5a_         107 NNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLPDLP  139 (353)
T ss_dssp             SSCCS-SCCC-CTTCTTCCEEECCSSCCSCCCCCC
T ss_pred             ccccc-cccc-hhhhccceeecccccccccccccc
Confidence            99998 6775 688999999999999988765543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.67  E-value=5.8e-08  Score=89.73  Aligned_cols=97  Identities=30%  Similarity=0.360  Sum_probs=79.7

Q ss_pred             CCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCCCCcccCCCCCCCEEEcccCcCcccCCccCcCCCCCcEEEc
Q 014778           93 TNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGPIPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVNSLQVLDL  172 (419)
Q Consensus        93 ~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~~L~~l~l  172 (419)
                      .+|++|||++|.++ .+|+.   +++|++|+|++|+++ .+|..+   .+|+.|++++|+++ .++..   .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLK-ALSDL---PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCS-CCCSC---CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccc-hhhhh---ccccccccc
Confidence            37899999999998 68964   468999999999999 889764   57999999999987 44431   246999999


Q ss_pred             ccCcCCCCCCCCCCccccccccccCCCCCC
Q 014778          173 SNNKLTGDIPTNGSFSLFTPISFANNQLNN  202 (419)
Q Consensus       173 ~~N~l~g~~p~~~~~~~~~~~~~~~n~~~~  202 (419)
                      ++|.++. +|..+.++.++.+++.++.+..
T Consensus       106 ~~n~l~~-lp~~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         106 SNNQLEK-LPELQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             CSSCCSS-CCCCTTCTTCCEEECCSSCCSC
T ss_pred             ccccccc-ccchhhhccceeeccccccccc
Confidence            9999984 6777778889999988887654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=5.3e-09  Score=100.47  Aligned_cols=110  Identities=25%  Similarity=0.314  Sum_probs=87.8

Q ss_pred             CEEEEEcCCCCccccc-hhhhhCCCCCCEEEcccCcccc----cCCccccCCCcCcEEeccccccCCC----CCcccC-C
Q 014778           70 SVTRVDLGNANLSGQL-VSQLGQLTNLQYLELYSNNISG----KVPEELGNLTNLVSLDLYLNNLNGP----IPTTLG-K  139 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~~-~~~~~~l~~L~~L~L~~N~l~g----~~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~-~  139 (419)
                      .|++||++.|++++.- ..-+..+++|+.|+|++|.++.    .++..+..+++|+.|||++|+++..    +...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5899999999999843 4556778999999999999983    4566678899999999999998621    223332 2


Q ss_pred             CCCCCEEEcccCcCccc----CCccCcCCCCCcEEEcccCcCCC
Q 014778          140 LSKLRFLRLNNNSLMGE----IPRSLTNVNSLQVLDLSNNKLTG  179 (419)
Q Consensus       140 l~~L~~l~l~~N~l~g~----~p~~l~~l~~L~~l~l~~N~l~g  179 (419)
                      ..+|+.|+|++|+++..    ++..+..+++|++|++++|+++.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            35799999999999753    56678889999999999998763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.1e-08  Score=90.85  Aligned_cols=129  Identities=26%  Similarity=0.269  Sum_probs=63.7

Q ss_pred             CEEEEEcCCCCcccc-chhhhhCCCCCCEEEcccCcccccCCccccCCCcCcEEecccc-ccCCC-CCcccCCCCCCCEE
Q 014778           70 SVTRVDLGNANLSGQ-LVSQLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLN-NLNGP-IPTTLGKLSKLRFL  146 (419)
Q Consensus        70 ~~~~l~L~~~~l~g~-~~~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N-~l~g~-~p~~~~~l~~L~~l  146 (419)
                      +++.|||+++.+++. +...+..+++|++|+|+++.+++..+..++.+++|++|+++++ .++.. +..-..++++|+.|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            455555555555433 2333445555555555555555555555555555555555552 33211 11111234444444


Q ss_pred             EcccC-----------------------------cCcc-cCCccCcCCCCCcEEEcccC-cCCCCCC-CCCCcccccccc
Q 014778          147 RLNNN-----------------------------SLMG-EIPRSLTNVNSLQVLDLSNN-KLTGDIP-TNGSFSLFTPIS  194 (419)
Q Consensus       147 ~l~~N-----------------------------~l~g-~~p~~l~~l~~L~~l~l~~N-~l~g~~p-~~~~~~~~~~~~  194 (419)
                      +++++                             .++. .+.....++++|+.|++++| .+++..+ ....++.++.++
T Consensus       127 ~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~  206 (284)
T d2astb2         127 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS  206 (284)
T ss_dssp             ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             ccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEE
Confidence            44432                             1211 11112245678888888875 4654333 344566777778


Q ss_pred             ccCC
Q 014778          195 FANN  198 (419)
Q Consensus       195 ~~~n  198 (419)
                      ++++
T Consensus       207 L~~C  210 (284)
T d2astb2         207 LSRC  210 (284)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            7774

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.7e-08  Score=83.32  Aligned_cols=86  Identities=26%  Similarity=0.164  Sum_probs=52.6

Q ss_pred             chhhhhCCCCCCEEEcccCccccc--CCccccCCCcCcEEeccccccCCCCCc-ccCCCCCCCEEEcccCcCcccCCcc-
Q 014778           85 LVSQLGQLTNLQYLELYSNNISGK--VPEELGNLTNLVSLDLYLNNLNGPIPT-TLGKLSKLRFLRLNNNSLMGEIPRS-  160 (419)
Q Consensus        85 ~~~~~~~l~~L~~L~L~~N~l~g~--~p~~~~~l~~L~~L~ls~N~l~g~~p~-~~~~l~~L~~l~l~~N~l~g~~p~~-  160 (419)
                      ++..+..+++|++|+|++|.|+..  ++..+..+++|+.|||++|+++ .+++ ......+|+.|++++|.++...... 
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~  135 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQS  135 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCcCcccch
Confidence            344445677777777777777732  2344556777777777777776 3433 2223345777777777776544322 


Q ss_pred             ------CcCCCCCcEEE
Q 014778          161 ------LTNVNSLQVLD  171 (419)
Q Consensus       161 ------l~~l~~L~~l~  171 (419)
                            +..+++|+.||
T Consensus       136 ~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         136 TYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHTTSTTCCEET
T ss_pred             hHHHHHHHHCCCCCEEC
Confidence                  44567777665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.28  E-value=8.3e-08  Score=89.10  Aligned_cols=134  Identities=20%  Similarity=0.218  Sum_probs=92.8

Q ss_pred             CCCEEEEEcCCCCccc----cchhhhhCCCCCCEEEcccCccccc-----CCccccCCCcCcEEeccccccCCC----CC
Q 014778           68 ENSVTRVDLGNANLSG----QLVSQLGQLTNLQYLELYSNNISGK-----VPEELGNLTNLVSLDLYLNNLNGP----IP  134 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g----~~~~~~~~l~~L~~L~L~~N~l~g~-----~p~~~~~l~~L~~L~ls~N~l~g~----~p  134 (419)
                      ...++.+++++|.++.    .+...+...+.|+.|+|++|.++..     +...+..+++|+.|+|++|.++..    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            3567888888888763    3455567788899999999988632     345577788899999999987632    44


Q ss_pred             cccCCCCCCCEEEcccCcCcccCCc----cCcC--CCCCcEEEcccCcCCCCC----CCC--CCccccccccccCCCCC
Q 014778          135 TTLGKLSKLRFLRLNNNSLMGEIPR----SLTN--VNSLQVLDLSNNKLTGDI----PTN--GSFSLFTPISFANNQLN  201 (419)
Q Consensus       135 ~~~~~l~~L~~l~l~~N~l~g~~p~----~l~~--l~~L~~l~l~~N~l~g~~----p~~--~~~~~~~~~~~~~n~~~  201 (419)
                      ..+...++|+.|+|++|.+++.-..    .+..  ..+|+.|++++|+++..-    ...  ...+.++.+++++|.+.
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            5567788899999999988754222    2222  357889999999876421    000  12345777888888764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.2e-08  Score=84.40  Aligned_cols=94  Identities=23%  Similarity=0.177  Sum_probs=68.1

Q ss_pred             hhhCCCCCCEEEcccCcccccCCccccCCCcCcEEeccccccCCC--CCcccCCCCCCCEEEcccCcCcccCCccCcCCC
Q 014778           88 QLGQLTNLQYLELYSNNISGKVPEELGNLTNLVSLDLYLNNLNGP--IPTTLGKLSKLRFLRLNNNSLMGEIPRSLTNVN  165 (419)
Q Consensus        88 ~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~--~p~~~~~l~~L~~l~l~~N~l~g~~p~~l~~l~  165 (419)
                      .+..+..+..+++.+|... .++..+..+++|++|||++|+++..  ++..+..+++|+.|+|++|.++..-+-......
T Consensus        37 ~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~  115 (162)
T d1koha1          37 DLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL  115 (162)
T ss_dssp             TTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTC
T ss_pred             hhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhcc
Confidence            3555556666666666554 4555556789999999999999843  344567899999999999999843222333445


Q ss_pred             CCcEEEcccCcCCCCCC
Q 014778          166 SLQVLDLSNNKLTGDIP  182 (419)
Q Consensus       166 ~L~~l~l~~N~l~g~~p  182 (419)
                      .|+.|++++|+++....
T Consensus       116 ~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1         116 KLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             CCSSCCCTTSTTSSSSS
T ss_pred             ccceeecCCCCcCcCcc
Confidence            79999999999987654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.19  E-value=2.3e-07  Score=86.07  Aligned_cols=134  Identities=13%  Similarity=0.171  Sum_probs=96.9

Q ss_pred             CCCEEEEEcCCCCcc----ccc---------hhhhhCCCCCCEEEcccCcccc----cCCccccCCCcCcEEeccccccC
Q 014778           68 ENSVTRVDLGNANLS----GQL---------VSQLGQLTNLQYLELYSNNISG----KVPEELGNLTNLVSLDLYLNNLN  130 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~----g~~---------~~~~~~l~~L~~L~L~~N~l~g----~~p~~~~~l~~L~~L~ls~N~l~  130 (419)
                      ..+++.|++++|.++    ..+         .......+.|+.|++++|.++.    .+...+...+.|+.|+|++|+++
T Consensus       120 ~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  199 (344)
T d2ca6a1         120 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR  199 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred             cccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhccccccccccc
Confidence            457999999999863    111         1223467889999999998863    24445667789999999999986


Q ss_pred             CC-----CCcccCCCCCCCEEEcccCcCccc----CCccCcCCCCCcEEEcccCcCCCCCCC-------CCCcccccccc
Q 014778          131 GP-----IPTTLGKLSKLRFLRLNNNSLMGE----IPRSLTNVNSLQVLDLSNNKLTGDIPT-------NGSFSLFTPIS  194 (419)
Q Consensus       131 g~-----~p~~~~~l~~L~~l~l~~N~l~g~----~p~~l~~l~~L~~l~l~~N~l~g~~p~-------~~~~~~~~~~~  194 (419)
                      ..     +...+..+++|+.|+|++|.++..    +...+..+++|++|++++|.+++.-..       ......++.++
T Consensus       200 ~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~  279 (344)
T d2ca6a1         200 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLR  279 (344)
T ss_dssp             HHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEE
T ss_pred             ccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEE
Confidence            32     344567789999999999998632    445678899999999999998753110       11234577889


Q ss_pred             ccCCCCC
Q 014778          195 FANNQLN  201 (419)
Q Consensus       195 ~~~n~~~  201 (419)
                      +++|.+.
T Consensus       280 ls~N~i~  286 (344)
T d2ca6a1         280 LQYNEIE  286 (344)
T ss_dssp             CCSSCCB
T ss_pred             CCCCcCC
Confidence            9988764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=2.2e-07  Score=88.80  Aligned_cols=134  Identities=22%  Similarity=0.189  Sum_probs=91.4

Q ss_pred             CCCEEEEEcCCCCccccchhhh----h-CCCCCCEEEcccCcccccCCc----cccCCCcCcEEeccccccCCC----CC
Q 014778           68 ENSVTRVDLGNANLSGQLVSQL----G-QLTNLQYLELYSNNISGKVPE----ELGNLTNLVSLDLYLNNLNGP----IP  134 (419)
Q Consensus        68 ~~~~~~l~L~~~~l~g~~~~~~----~-~l~~L~~L~L~~N~l~g~~p~----~~~~l~~L~~L~ls~N~l~g~----~p  134 (419)
                      ...+..+++++|.++......+    . ....|+.+++++|.++..-..    .+....+|++|||++|+++..    ++
T Consensus       282 ~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~  361 (460)
T d1z7xw1         282 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC  361 (460)
T ss_dssp             CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred             cccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhh
Confidence            4568889999999875433332    2 345799999999988754322    334556899999999998642    44


Q ss_pred             cccC-CCCCCCEEEcccCcCccc----CCccCcCCCCCcEEEcccCcCCCCCCC------CCCccccccccccCCCCC
Q 014778          135 TTLG-KLSKLRFLRLNNNSLMGE----IPRSLTNVNSLQVLDLSNNKLTGDIPT------NGSFSLFTPISFANNQLN  201 (419)
Q Consensus       135 ~~~~-~l~~L~~l~l~~N~l~g~----~p~~l~~l~~L~~l~l~~N~l~g~~p~------~~~~~~~~~~~~~~n~~~  201 (419)
                      ..+. ..+.|++|+|++|.++..    ++..+..+++|++||+++|+++.....      ....+.++.+.+.+|.+.
T Consensus       362 ~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             hhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence            4443 457799999999998742    455667788999999999998742110      011234667777777654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=3.8e-06  Score=75.43  Aligned_cols=107  Identities=18%  Similarity=0.235  Sum_probs=83.0

Q ss_pred             CCEEEEEcCCC-Ccccc-chhhhhC-CCCCCEEEcccC--ccccc-CCccccCCCcCcEEecccc-ccCCCCCcccCCCC
Q 014778           69 NSVTRVDLGNA-NLSGQ-LVSQLGQ-LTNLQYLELYSN--NISGK-VPEELGNLTNLVSLDLYLN-NLNGPIPTTLGKLS  141 (419)
Q Consensus        69 ~~~~~l~L~~~-~l~g~-~~~~~~~-l~~L~~L~L~~N--~l~g~-~p~~~~~l~~L~~L~ls~N-~l~g~~p~~~~~l~  141 (419)
                      .+++.|+++++ +++.. +...+.. .++|+.|++++.  .++.. +...+..+++|++|++++| .+++..+..+.+++
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~  200 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  200 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             HhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC
Confidence            57999999986 45532 3344444 478999999864  44432 3334467899999999986 57888888899999


Q ss_pred             CCCEEEccc-CcCcccCCccCcCCCCCcEEEcccC
Q 014778          142 KLRFLRLNN-NSLMGEIPRSLTNVNSLQVLDLSNN  175 (419)
Q Consensus       142 ~L~~l~l~~-N~l~g~~p~~l~~l~~L~~l~l~~N  175 (419)
                      +|++|+|++ +.+++.....++++++|+.|+++++
T Consensus       201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            999999999 5787777777899999999999877

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.87  E-value=2.5e-06  Score=70.27  Aligned_cols=109  Identities=15%  Similarity=0.150  Sum_probs=73.0

Q ss_pred             CCCEEEEEcCCC-Ccccc----chhhhhCCCCCCEEEcccCccccc----CCccccCCCcCcEEeccccccCCC----CC
Q 014778           68 ENSVTRVDLGNA-NLSGQ----LVSQLGQLTNLQYLELYSNNISGK----VPEELGNLTNLVSLDLYLNNLNGP----IP  134 (419)
Q Consensus        68 ~~~~~~l~L~~~-~l~g~----~~~~~~~l~~L~~L~L~~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~p  134 (419)
                      .+.++.|+|+++ .++..    +-..+...++|++|+|++|.++..    +...+...+.|+.|+|++|.++..    +-
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            356888999874 56542    445677778899999999988743    223344567888999998888743    22


Q ss_pred             cccCCCCCCCEEEcccCcCccc-------CCccCcCCCCCcEEEcccCc
Q 014778          135 TTLGKLSKLRFLRLNNNSLMGE-------IPRSLTNVNSLQVLDLSNNK  176 (419)
Q Consensus       135 ~~~~~l~~L~~l~l~~N~l~g~-------~p~~l~~l~~L~~l~l~~N~  176 (419)
                      ..+...++|+.|+|++|.+...       +...+..-++|+.|+++.+.
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            3456667888888888865411       23334556778888776553

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.28  E-value=2.1e-05  Score=64.37  Aligned_cols=110  Identities=20%  Similarity=0.227  Sum_probs=76.7

Q ss_pred             CCCEEEEEcCC-CCcccc----chhhhhCCCCCCEEEcccCccccc----CCccccCCCcCcEEeccccccCCC----CC
Q 014778           68 ENSVTRVDLGN-ANLSGQ----LVSQLGQLTNLQYLELYSNNISGK----VPEELGNLTNLVSLDLYLNNLNGP----IP  134 (419)
Q Consensus        68 ~~~~~~l~L~~-~~l~g~----~~~~~~~l~~L~~L~L~~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~p  134 (419)
                      .+.++.|+|++ +.++..    +...+...++|++|+|++|.++..    +-..+...+.|+.+++++|.++..    +-
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHH
Confidence            35788899987 456542    455667888999999999988743    333455678899999999888633    23


Q ss_pred             cccCCCCCCCEEEc--ccCcCcc----cCCccCcCCCCCcEEEcccCcC
Q 014778          135 TTLGKLSKLRFLRL--NNNSLMG----EIPRSLTNVNSLQVLDLSNNKL  177 (419)
Q Consensus       135 ~~~~~l~~L~~l~l--~~N~l~g----~~p~~l~~l~~L~~l~l~~N~l  177 (419)
                      ..+...++|+.++|  ++|.+..    .+...+...++|+.|+++.|+.
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            45667788887655  4666643    2444566778899998876643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.28  E-value=4.1e-05  Score=62.63  Aligned_cols=89  Identities=18%  Similarity=0.218  Sum_probs=66.1

Q ss_pred             hCCCCCCEEEcccC-ccccc----CCccccCCCcCcEEeccccccCCC----CCcccCCCCCCCEEEcccCcCccc----
Q 014778           90 GQLTNLQYLELYSN-NISGK----VPEELGNLTNLVSLDLYLNNLNGP----IPTTLGKLSKLRFLRLNNNSLMGE----  156 (419)
Q Consensus        90 ~~l~~L~~L~L~~N-~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~l~l~~N~l~g~----  156 (419)
                      .+.++|++|+|+++ .++..    +-..+...+.|+.|+|++|.++..    +...+...+.|+.|+|++|.++..    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            45688999999974 56532    334566778899999999998632    333445668899999999998743    


Q ss_pred             CCccCcCCCCCcEEEcccCcCC
Q 014778          157 IPRSLTNVNSLQVLDLSNNKLT  178 (419)
Q Consensus       157 ~p~~l~~l~~L~~l~l~~N~l~  178 (419)
                      +-..+..-++|+.|++++|.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHHhCCcCCEEECCCCcCC
Confidence            2234677789999999998765

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.88  E-value=0.023  Score=48.69  Aligned_cols=116  Identities=10%  Similarity=-0.020  Sum_probs=74.4

Q ss_pred             HHHHHhhCCCCCCeeCcCCceEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCC-CCCCcceeEEEecCCce
Q 014778          282 ELQVATDNFSNRNILGRGGFGKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAV-HRNLLRLRGFCMTPTER  360 (419)
Q Consensus       282 ~~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~  360 (419)
                      ++....+.|......+-++...||+... +++.+.+|+...... .....+.+|...+..+. +--+.+++++...++..
T Consensus         8 ~l~~~~~~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~~~-~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~   85 (263)
T d1j7la_           8 ELKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYK-GTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWS   85 (263)
T ss_dssp             HHHHHHTTSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGGGT-TSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEE
T ss_pred             HHHHhhhceEEEEcCCCCCCCcEEEEEe-CCCeEEEEEcCCCcc-cchhhHHHHHHHHHHHhccCCCCcEEEEEecCCce
Confidence            4444445555444333333468998875 455677888753322 22335677888776653 33356778888888889


Q ss_pred             eEEeccCCCCChhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 014778          361 LLVYPFMVNGSVASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYS  411 (419)
Q Consensus       361 ~lv~e~~~~GsL~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~  411 (419)
                      ++||+++++.++.+......            +...++.++++.++.||+.
T Consensus        86 ~lv~~~l~G~~~~~~~~~~~------------~~~~~~~~l~~~l~~lH~~  124 (263)
T d1j7la_          86 NLLMSEADGVLCSEEYEDEQ------------SPEKIIELYAECIRLFHSI  124 (263)
T ss_dssp             EEEEECCSSEEHHHHTTTCS------------CHHHHHHHHHHHHHHHHTS
T ss_pred             EEEEEecccccccccccccc------------cHHHHHHHHHHHHHHHhcc
Confidence            99999999988866443211            1234677889999999965

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.72  E-value=0.00073  Score=54.68  Aligned_cols=94  Identities=21%  Similarity=0.236  Sum_probs=65.8

Q ss_pred             chhhhhCCCCCCEEEccc-Cccccc----CCccccCCCcCcEEeccccccCCC----CCcccCCCCCCCEEEcccCcCcc
Q 014778           85 LVSQLGQLTNLQYLELYS-NNISGK----VPEELGNLTNLVSLDLYLNNLNGP----IPTTLGKLSKLRFLRLNNNSLMG  155 (419)
Q Consensus        85 ~~~~~~~l~~L~~L~L~~-N~l~g~----~p~~~~~l~~L~~L~ls~N~l~g~----~p~~~~~l~~L~~l~l~~N~l~g  155 (419)
                      +..-..+.+.|++|+|++ |.++..    +-..+...++|+.|+|++|.++..    +-..+...++++.+++++|.+..
T Consensus         9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~   88 (166)
T d1io0a_           9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG   88 (166)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence            344445678999999998 567522    334566788999999999998643    22334567899999999999864


Q ss_pred             c----CCccCcCCCCCcEEEc--ccCcCC
Q 014778          156 E----IPRSLTNVNSLQVLDL--SNNKLT  178 (419)
Q Consensus       156 ~----~p~~l~~l~~L~~l~l--~~N~l~  178 (419)
                      .    +-..+...++|+.+++  ++|.+.
T Consensus        89 ~g~~~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          89 SGILALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             hhHHHHHHHHHhCccccEEeeccCCCcCc
Confidence            3    3345677788887665  455553

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=94.03  E-value=0.07  Score=45.20  Aligned_cols=98  Identities=10%  Similarity=-0.016  Sum_probs=64.6

Q ss_pred             eeCcCCc-eEEEEEEeCCCCEEEEEEccccccccCHHHHHHHHHHHhcCCC--CCCcceeEEEecCCceeEEeccCCCCC
Q 014778          295 ILGRGGF-GKVYKGRLTDGSLVAVKRLKEERTQGGELQFQTEVEMISMAVH--RNLLRLRGFCMTPTERLLVYPFMVNGS  371 (419)
Q Consensus       295 ~lG~G~f-g~Vy~~~~~~g~~vAvK~l~~~~~~~~~~~f~~E~~~l~~l~H--~niv~l~g~~~~~~~~~lv~e~~~~Gs  371 (419)
                      .+..|.. +.||+...+++..+.+|.-....    ...+.+|...+..+..  --+.++++++.+++..++||||+++-+
T Consensus        17 ~~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~----~~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~   92 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSAQGRPVLFVKTDLSGA----LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQD   92 (255)
T ss_dssp             ECSCTTSSCEEEEEECTTSCCEEEEEECSCT----TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEE
T ss_pred             EcCCcccCCeEEEEEeCCCCEEEEEeCCccC----HhHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeeccc
Confidence            3445543 67899988778788888764322    2246677777665533  235677888888888999999999865


Q ss_pred             hhhhhcCCccccCCCcchhhHHHHHHHHHHHHHHHHhhhc
Q 014778          372 VASCLRGMFIVSGFPSFFSYLFFIAFVQSLIQSLHFAKYS  411 (419)
Q Consensus       372 L~~~L~~~~~~~~~~~~~~~~~~~~i~~qia~gl~yLH~~  411 (419)
                      +.+.-            ..   ....+.++++.|+-||+.
T Consensus        93 ~~~~~------------~~---~~~~~~~l~~~la~LH~~  117 (255)
T d1nd4a_          93 LLSSH------------LA---PAEKVSIMADAMRRLHTL  117 (255)
T ss_dssp             TTTSC------------CC---HHHHHHHHHHHHHHHTTS
T ss_pred             ccccc------------cc---HHHHHHHHHHHHHHHccC
Confidence            53311            11   123456788888889954

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=87.45  E-value=0.6  Score=42.28  Aligned_cols=77  Identities=10%  Similarity=-0.023  Sum_probs=46.6

Q ss_pred             CeeCcCCceEEEEEEeC-CCCEEEEEEccccc------cccCHHHHHHHHHHHhcCC-C--CCCcceeEEEecCCceeEE
Q 014778          294 NILGRGGFGKVYKGRLT-DGSLVAVKRLKEER------TQGGELQFQTEVEMISMAV-H--RNLLRLRGFCMTPTERLLV  363 (419)
Q Consensus       294 ~~lG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~------~~~~~~~f~~E~~~l~~l~-H--~niv~l~g~~~~~~~~~lv  363 (419)
                      +.||.|....||+.... +++.+.||.-....      -.........|.+.|..+. +  ..+.+++++  +++..++|
T Consensus        32 ~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~~~~lv  109 (392)
T d2pula1          32 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVTV  109 (392)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEEE
T ss_pred             EEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cCCCCEEE
Confidence            46899999999999875 46788999643211      0111223456777766542 2  334455544  45567899


Q ss_pred             eccCCCCCh
Q 014778          364 YPFMVNGSV  372 (419)
Q Consensus       364 ~e~~~~GsL  372 (419)
                      |||+++..+
T Consensus       110 mE~L~~~~~  118 (392)
T d2pula1         110 MEDLSHLKI  118 (392)
T ss_dssp             ECCCTTSEE
T ss_pred             EeccCCccc
Confidence            999987543