Query 014780
Match_columns 419
No_of_seqs 151 out of 386
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 08:26:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00249 Myb_DNA-binding: Myb- 99.1 1.7E-10 3.7E-15 84.0 5.4 48 289-339 1-48 (48)
2 smart00717 SANT SANT SWI3, AD 98.8 1.3E-08 2.9E-13 70.2 5.7 47 290-340 2-48 (49)
3 cd00167 SANT 'SWI3, ADA2, N-Co 98.7 4.2E-08 9.2E-13 67.0 5.5 45 291-339 1-45 (45)
4 PLN03212 Transcription repress 98.6 6.2E-08 1.3E-12 94.0 6.9 56 286-344 22-77 (249)
5 PF13921 Myb_DNA-bind_6: Myb-l 98.5 2.1E-07 4.5E-12 69.8 5.3 44 292-340 1-44 (60)
6 PLN03091 hypothetical protein; 98.3 6.5E-07 1.4E-11 92.9 6.4 56 286-344 11-66 (459)
7 KOG0048 Transcription factor, 98.1 8.4E-06 1.8E-10 77.2 7.2 53 289-344 9-61 (238)
8 PLN03212 Transcription repress 97.9 1.3E-05 2.9E-10 78.1 5.4 50 288-342 77-126 (249)
9 PLN03091 hypothetical protein; 97.8 3.2E-05 7E-10 80.6 5.8 48 289-341 67-114 (459)
10 TIGR01557 myb_SHAQKYF myb-like 97.7 5.8E-05 1.3E-09 58.6 5.2 46 287-334 1-49 (57)
11 PF13837 Myb_DNA-bind_4: Myb/S 97.4 0.00019 4.1E-09 56.9 3.7 54 289-342 1-67 (90)
12 KOG0457 Histone acetyltransfer 97.3 0.00042 9E-09 72.2 6.8 48 291-342 74-121 (438)
13 KOG0048 Transcription factor, 96.8 0.0018 3.9E-08 61.6 5.4 50 288-342 61-110 (238)
14 PF13873 Myb_DNA-bind_5: Myb/S 96.4 0.0075 1.6E-07 47.4 5.6 52 290-341 3-71 (78)
15 PF13325 MCRS_N: N-terminal re 96.4 0.0034 7.3E-08 59.9 4.3 63 287-349 71-136 (199)
16 KOG0051 RNA polymerase I termi 96.4 0.0053 1.1E-07 66.5 6.1 51 288-344 383-433 (607)
17 KOG0049 Transcription factor, 96.1 0.0068 1.5E-07 66.5 4.8 50 288-341 359-408 (939)
18 KOG0049 Transcription factor, 95.9 0.0065 1.4E-07 66.7 3.5 52 285-340 408-459 (939)
19 PF09111 SLIDE: SLIDE; InterP 95.7 0.011 2.3E-07 52.1 3.7 54 288-341 48-112 (118)
20 COG5114 Histone acetyltransfer 95.3 0.081 1.7E-06 54.5 8.5 46 291-340 65-110 (432)
21 PLN03142 Probable chromatin-re 92.6 0.18 3.9E-06 58.0 5.6 55 288-342 925-987 (1033)
22 KOG4282 Transcription factor G 91.8 0.29 6.4E-06 48.5 5.5 54 289-342 54-116 (345)
23 COG5147 REB1 Myb superfamily p 91.8 0.092 2E-06 56.3 2.0 50 288-343 290-339 (512)
24 KOG1279 Chromatin remodeling f 91.5 0.25 5.3E-06 53.1 4.8 48 287-339 251-298 (506)
25 KOG0050 mRNA splicing protein 91.4 0.29 6.2E-06 53.0 5.1 50 290-343 8-57 (617)
26 COG5259 RSC8 RSC chromatin rem 89.7 0.4 8.6E-06 51.4 4.3 46 289-339 279-324 (531)
27 COG5147 REB1 Myb superfamily p 89.0 0.54 1.2E-05 50.6 4.9 80 286-382 17-97 (512)
28 PF08914 Myb_DNA-bind_2: Rap1 88.4 0.98 2.1E-05 36.2 4.8 50 289-341 2-59 (65)
29 KOG0051 RNA polymerase I termi 87.3 1.3 2.7E-05 48.8 6.3 57 287-347 434-516 (607)
30 PF12776 Myb_DNA-bind_3: Myb/S 83.5 1.9 4.1E-05 34.6 4.2 50 291-340 1-63 (96)
31 PF08074 CHDCT2: CHDCT2 (NUC03 82.0 1 2.2E-05 42.7 2.4 63 288-350 2-78 (173)
32 KOG2656 DNA methyltransferase 82.0 0.79 1.7E-05 48.3 1.9 52 290-342 131-188 (445)
33 PF04504 DUF573: Protein of un 77.0 5 0.00011 34.2 4.8 54 288-341 3-64 (98)
34 COG5118 BDP1 Transcription ini 75.4 4.7 0.0001 42.8 5.1 55 281-341 358-412 (507)
35 KOG0384 Chromodomain-helicase 65.3 3.4 7.3E-05 48.9 1.7 54 288-341 1132-1193(1373)
36 KOG0050 mRNA splicing protein 49.1 19 0.00042 39.6 3.9 46 289-340 59-104 (617)
37 cd01187 INT_SG4 INT_SG4, DNA b 45.4 57 0.0012 30.4 6.0 83 288-373 98-187 (299)
38 PF09420 Nop16: Ribosome bioge 37.8 74 0.0016 29.1 5.4 52 287-339 112-163 (164)
39 smart00595 MADF subfamily of S 36.7 35 0.00075 27.1 2.7 25 311-340 29-53 (89)
40 cd02135 Arsenite_oxidase Nitro 27.5 71 0.0015 27.3 3.3 35 354-388 11-45 (160)
41 PF07128 DUF1380: Protein of u 25.5 80 0.0017 29.3 3.4 19 360-378 88-106 (139)
42 PLN03162 golden-2 like transcr 23.2 1.9E+02 0.0042 31.3 6.1 54 285-340 233-291 (526)
43 KOG3554 Histone deacetylase co 22.9 45 0.00098 36.7 1.5 53 286-339 282-334 (693)
44 PF10545 MADF_DNA_bdg: Alcohol 22.9 82 0.0018 24.0 2.6 27 311-340 28-54 (85)
45 PF00984 UDPG_MGDP_dh: UDP-glu 22.3 24 0.00052 29.8 -0.5 44 49-99 21-64 (96)
46 KOG1194 Predicted DNA-binding 22.1 1.7E+02 0.0037 32.3 5.5 49 288-341 186-234 (534)
47 cd01192 INT_P22_C P22-like int 20.0 1.8E+02 0.004 24.9 4.4 81 287-374 2-85 (177)
No 1
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.09 E-value=1.7e-10 Score=84.03 Aligned_cols=48 Identities=29% Similarity=0.603 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhh
Q 014780 289 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 339 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLl 339 (419)
+.+||++|++.|+++|++||.++|..|...++ .+||..+|+.+|++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 46899999999999999999988999999886 5999999999999985
No 2
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.79 E-value=1.3e-08 Score=70.24 Aligned_cols=47 Identities=34% Similarity=0.639 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 014780 290 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 340 (419)
Q Consensus 290 r~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 340 (419)
.+||.+|++.|+.+|.+||.++|..|...++ +||..+|+++|+++++
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~----~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKELP----GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC----CCCHHHHHHHHHHHcC
Confidence 5799999999999999999779999998764 9999999999999875
No 3
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.68 E-value=4.2e-08 Score=67.00 Aligned_cols=45 Identities=38% Similarity=0.770 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhh
Q 014780 291 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 339 (419)
Q Consensus 291 ~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLl 339 (419)
+||.+|++.|+.++++||.++|..|..... .||..+|+++|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~----~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP----GRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC----CCCHHHHHHHHHHhC
Confidence 599999999999999999889999998764 699999999999874
No 4
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.62 E-value=6.2e-08 Score=94.04 Aligned_cols=56 Identities=27% Similarity=0.392 Sum_probs=48.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhcccc
Q 014780 286 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 344 (419)
Q Consensus 286 RK~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas~~ 344 (419)
--++.+||+||++.|+..|++||.++|+.|.+... .+||+.+|++||.|.+++...
T Consensus 22 glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g---~gRT~KQCReRW~N~L~P~I~ 77 (249)
T PLN03212 22 GMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG---LLRCGKSCRLRWMNYLRPSVK 77 (249)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhh---cCCCcchHHHHHHHhhchhcc
Confidence 33577899999999999999999999999987643 489999999999999987654
No 5
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.50 E-value=2.1e-07 Score=69.81 Aligned_cols=44 Identities=39% Similarity=0.795 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 014780 292 WTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 340 (419)
Q Consensus 292 WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 340 (419)
||.+|++.|+.+|++||. +|+.|...+ .+||..+|++||++.++
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l----~~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHL----GNRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHS----TTS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHH----CcCCHHHHHHHHHHHCc
Confidence 999999999999999995 999998875 37999999999999554
No 6
>PLN03091 hypothetical protein; Provisional
Probab=98.35 E-value=6.5e-07 Score=92.88 Aligned_cols=56 Identities=25% Similarity=0.509 Sum_probs=48.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhcccc
Q 014780 286 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 344 (419)
Q Consensus 286 RK~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas~~ 344 (419)
.-++.+||+||++.|+..|++||.++|+.|.+... .+||+.+|++||.|.+.....
T Consensus 11 klrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g---~gRT~KQCRERW~NyLdP~Ik 66 (459)
T PLN03091 11 KLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG---LQRCGKSCRLRWINYLRPDLK 66 (459)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhc---cCcCcchHhHHHHhccCCccc
Confidence 33456899999999999999999999999997643 489999999999999987643
No 7
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.08 E-value=8.4e-06 Score=77.23 Aligned_cols=53 Identities=28% Similarity=0.404 Sum_probs=48.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhcccc
Q 014780 289 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 344 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas~~ 344 (419)
+-+||+||++.|++-|++||.|+|..|.+... + .|+...|+-||-|.+++.+.
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~g--l-~R~GKSCRlRW~NyLrP~ik 61 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAG--L-RRCGKSCRLRWTNYLRPDLK 61 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcC--C-CccchHHHHHhhcccCCCcc
Confidence 57999999999999999999999999999875 2 99999999999999997754
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.92 E-value=1.3e-05 Score=78.09 Aligned_cols=50 Identities=20% Similarity=0.314 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhcc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 342 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas 342 (419)
++.+||.||++.|++.+++||. +|+.|.+.+ .+||..++|.+|.++++..
T Consensus 77 ~kgpWT~EED~lLlel~~~~Gn-KWs~IAk~L----pGRTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 77 KRGGITSDEEDLILRLHRLLGN-RWSLIAGRI----PGRTDNEIKNYWNTHLRKK 126 (249)
T ss_pred ccCCCChHHHHHHHHHHHhccc-cHHHHHhhc----CCCCHHHHHHHHHHHHhHH
Confidence 4568999999999999999996 999999854 5999999999999988754
No 9
>PLN03091 hypothetical protein; Provisional
Probab=97.78 E-value=3.2e-05 Score=80.59 Aligned_cols=48 Identities=21% Similarity=0.458 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhc
Q 014780 289 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa 341 (419)
+.+||.||++.|++.+++||. +|+.|...+ .+||..++|.+|..++|.
T Consensus 67 KgpWT~EED~lLLeL~k~~Gn-KWskIAk~L----PGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGN-RWSQIAAQL----PGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHHHhc----CCCCHHHHHHHHHHHHHH
Confidence 568999999999999999997 999999764 599999999999998864
No 10
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.73 E-value=5.8e-05 Score=58.63 Aligned_cols=46 Identities=17% Similarity=0.349 Sum_probs=38.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCh---HHHHHHhcCCCCCCChhhHHHH
Q 014780 287 KNQRMWTLSEVMKLIDGISQFGVGKW---TDIKRLLFSSSSHRTPIDLRDK 334 (419)
Q Consensus 287 K~rr~WT~EEveaLv~GV~KyG~GkW---k~Il~~~f~~f~~RT~VDLKDK 334 (419)
|++..||+||-+.+++||+.||.|+| +.|+..+.. ...|..+++-.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~--~~lT~~qV~SH 49 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVV--DGLTRDQVASH 49 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCC--CCCCHHHHHHH
Confidence 46789999999999999999999999 999987641 23388888754
No 11
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=97.36 E-value=0.00019 Score=56.89 Aligned_cols=54 Identities=33% Similarity=0.563 Sum_probs=36.5
Q ss_pred CCCCCHHHHHHHHHHHhh------cCC-----C--ChHHHHHHhcCCCCCCChhhHHHHHHHhhhcc
Q 014780 289 QRMWTLSEVMKLIDGISQ------FGV-----G--KWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 342 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~K------yG~-----G--kWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas 342 (419)
|..||.+|+.+|++.+.. |+. + -|..|.......=-.||+.+|++||.||.+..
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Y 67 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKY 67 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999887 221 1 49999987532112899999999999999743
No 12
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.34 E-value=0.00042 Score=72.20 Aligned_cols=48 Identities=23% Similarity=0.520 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhcc
Q 014780 291 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 342 (419)
Q Consensus 291 ~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas 342 (419)
-||.+|+-.|++|++.||.|||.+|.+... .||.-++|+.|.++.--+
T Consensus 74 ~WtadEEilLLea~~t~G~GNW~dIA~hIG----tKtkeeck~hy~k~fv~s 121 (438)
T KOG0457|consen 74 SWTADEEILLLEAAETYGFGNWQDIADHIG----TKTKEECKEHYLKHFVNS 121 (438)
T ss_pred CCChHHHHHHHHHHHHhCCCcHHHHHHHHc----ccchHHHHHHHHHHHhcC
Confidence 599999999999999999999999999875 799999999999988533
No 13
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.83 E-value=0.0018 Score=61.58 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhcc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 342 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas 342 (419)
++..||+||++.|+++...||. +|+.|.+..+ +||--++|.-|..-+|..
T Consensus 61 krg~fT~eEe~~Ii~lH~~~GN-rWs~IA~~LP----GRTDNeIKN~Wnt~lkkk 110 (238)
T KOG0048|consen 61 KRGNFSDEEEDLIIKLHALLGN-RWSLIAGRLP----GRTDNEVKNHWNTHLKKK 110 (238)
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-HHHHHHhhCC----CcCHHHHHHHHHHHHHHH
Confidence 3678999999999999999997 9999998765 999999999998877543
No 14
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=96.44 E-value=0.0075 Score=47.40 Aligned_cols=52 Identities=21% Similarity=0.362 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHhhc-----CC-----------CChHHHHHHhcCCC-CCCChhhHHHHHHHhhhc
Q 014780 290 RMWTLSEVMKLIDGISQF-----GV-----------GKWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 290 r~WT~EEveaLv~GV~Ky-----G~-----------GkWk~Il~~~f~~f-~~RT~VDLKDKWRNLlKa 341 (419)
..||.+|.+.|++-|++| |. .-|..|...+-... ..||..+||.+|.||...
T Consensus 3 ~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~ 71 (78)
T PF13873_consen 3 PNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK 71 (78)
T ss_pred CCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 469999999999999998 31 15999999874332 489999999999999864
No 15
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.44 E-value=0.0034 Score=59.87 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=53.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhcCCC-CCCChhhHHHHHHHhhhccccccccC
Q 014780 287 KNQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSS-SHRTPIDLRDKWRNLLRASYAHQKNK 349 (419)
Q Consensus 287 K~rr~WT~EEveaLv~GV~KyG--~GkWk~Il~~~f~~f-~~RT~VDLKDKWRNLlKas~~p~~~r 349 (419)
..+-+||.+|++.|........ ...+.+|+..+.++| ..||+.+|.+.|+.|.++.-.+.+..
T Consensus 71 q~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~DQ~v 136 (199)
T PF13325_consen 71 QSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLPDQSV 136 (199)
T ss_pred cccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhhcccc
Confidence 3577999999999999887764 568999999998888 67999999999999998887766543
No 16
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=96.41 E-value=0.0053 Score=66.50 Aligned_cols=51 Identities=29% Similarity=0.642 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhcccc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYA 344 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas~~ 344 (419)
.+-.||+||.+.|..-|.++|. .|+.|-+.. +|.+.+|+|+||+.++.+..
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~l-----gr~P~~crd~wr~~~~~g~~ 433 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKAL-----GRMPMDCRDRWRQYVKCGSK 433 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHH-----ccCcHHHHHHHHHhhccccc
Confidence 4567999999999999999996 999999876 79999999999999998754
No 17
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.08 E-value=0.0068 Score=66.50 Aligned_cols=50 Identities=22% Similarity=0.546 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa 341 (419)
++-+||++|+..|+.+|++||.--|.+|...++ +|+-.||+|+|-|.+..
T Consensus 359 khg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP----nRSdsQcR~RY~nvL~~ 408 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP----NRSDSQCRERYTNVLNR 408 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC----CccHHHHHHHHHHHHHH
Confidence 567899999999999999999999999997764 99999999999988754
No 18
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=95.86 E-value=0.0065 Score=66.66 Aligned_cols=52 Identities=29% Similarity=0.543 Sum_probs=43.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 014780 285 RRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 340 (419)
Q Consensus 285 rRK~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 340 (419)
++-+.-.||..|++.|+..|++||.|+|.+|.... .+||..++..+-+.++.
T Consensus 408 ~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~L----p~~t~~q~~rrR~R~~~ 459 (939)
T KOG0049|consen 408 RSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLL----PKKTSRQLRRRRLRLIA 459 (939)
T ss_pred HhhccCceeecchHHHHHHHHHHccchHHHHHHHc----cccchhHHHHHHHHHHH
Confidence 45566789999999999999999999999999765 48999888777666654
No 19
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=95.73 E-value=0.011 Score=52.12 Aligned_cols=54 Identities=24% Similarity=0.507 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------cCC-CCCCChhhHHHHHHHhhhc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~---GkWk~Il~~~-------f~~-f~~RT~VDLKDKWRNLlKa 341 (419)
..+.||.+|+..|+--|.+||. |.|..|++.. |+. |..||+.+|..+-..|+++
T Consensus 48 ~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (118)
T PF09111_consen 48 KKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL 112 (118)
T ss_dssp S-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999 9999999873 333 3899999999999999875
No 20
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=95.25 E-value=0.081 Score=54.49 Aligned_cols=46 Identities=22% Similarity=0.559 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 014780 291 MWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 340 (419)
Q Consensus 291 ~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 340 (419)
-|+..|+-.|+++.+.+|.|+|.+|.+... .|+.-++|+.|-.+.-
T Consensus 65 ~WgadEEllli~~~~TlGlGNW~dIadyiG----sr~kee~k~HylK~y~ 110 (432)
T COG5114 65 GWGADEELLLIECLDTLGLGNWEDIADYIG----SRAKEEIKSHYLKMYD 110 (432)
T ss_pred CcCchHHHHHHHHHHhcCCCcHHHHHHHHh----hhhhHHHHHHHHHHHh
Confidence 599999999999999999999999998764 7999999999987774
No 21
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=92.58 E-value=0.18 Score=57.96 Aligned_cols=55 Identities=20% Similarity=0.425 Sum_probs=47.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHh-------cCC-CCCCChhhHHHHHHHhhhcc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 342 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~-------f~~-f~~RT~VDLKDKWRNLlKas 342 (419)
+.+.||.+|+..|+-.+.+||.|+|..|+... |+. |..||+.+|+.|-.+|++.-
T Consensus 925 ~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~~ 987 (1033)
T PLN03142 925 KGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRLI 987 (1033)
T ss_pred CCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999998763 333 48999999999999999863
No 22
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=91.82 E-value=0.29 Score=48.52 Aligned_cols=54 Identities=24% Similarity=0.449 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHhhc----CCCC-----hHHHHHHhcCCCCCCChhhHHHHHHHhhhcc
Q 014780 289 QRMWTLSEVMKLIDGISQF----GVGK-----WTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 342 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~Ky----G~Gk-----Wk~Il~~~f~~f~~RT~VDLKDKWRNLlKas 342 (419)
...|+.+|+.+||+.-.+. ..|+ |..|.......=-.||+++||.||.||.|..
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y 116 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY 116 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 6889999999999887653 4555 9999985422224899999999999999753
No 23
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=91.79 E-value=0.092 Score=56.31 Aligned_cols=50 Identities=34% Similarity=0.683 Sum_probs=44.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhccc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 343 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas~ 343 (419)
.+..||.+|+..|..-|.++|. .|+.|.... +|-+.+|.|+||+.++.+.
T Consensus 290 ~~~~wt~e~~~eL~~~~~~~~~-~w~~ig~~~-----~rmp~~crd~wr~~~~~g~ 339 (512)
T COG5147 290 QRGKWTKEEEQELAKLVVEHGG-SWTEIGKLL-----GRMPNDCRDRWRDYVKCGD 339 (512)
T ss_pred hhccCccccccccccccccccc-hhhHhhhhh-----ccCcHHHHHHHhhhccccC
Confidence 4567999999999999999995 999999764 8999999999999999873
No 24
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=91.48 E-value=0.25 Score=53.08 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=42.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhh
Q 014780 287 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 339 (419)
Q Consensus 287 K~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLl 339 (419)
..+..||.+|.-.|++||++||- .|.+|..... .||.-||=.|+..|=
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg----~ks~eqCI~kFL~LP 298 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG----TKSQEQCILKFLRLP 298 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC----CCCHHHHHHHHHhcC
Confidence 45678999999999999999997 9999998764 899999999998764
No 25
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=91.40 E-value=0.29 Score=53.01 Aligned_cols=50 Identities=22% Similarity=0.550 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhccc
Q 014780 290 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 343 (419)
Q Consensus 290 r~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas~ 343 (419)
--|+--|++.|..+|.+||..+|+.|...+ +..|+.+|+-+|--.+-.++
T Consensus 8 gvwrntEdeilkaav~kyg~nqws~i~sll----~~kt~rqC~~rw~e~ldp~i 57 (617)
T KOG0050|consen 8 GVWRNTEDEVLKAAVMKYGKNQWSRIASLL----NRKTARQCKARWEEWLDPAI 57 (617)
T ss_pred ceecccHHHHHHHHHHHcchHHHHHHHHHH----hhcchhHHHHHHHHHhCHHH
Confidence 469999999999999999999999999887 47899999999987776554
No 26
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=89.65 E-value=0.4 Score=51.39 Aligned_cols=46 Identities=22% Similarity=0.476 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhh
Q 014780 289 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 339 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLl 339 (419)
-.+||.+|.-.|++||+.||- .|.+|..... ++|.-||=-|+-+|=
T Consensus 279 dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg----tKt~EqCIl~FL~LP 324 (531)
T COG5259 279 DKNWSRQELLLLLEGIEMYGD-DWDKVARHVG----TKTKEQCILHFLQLP 324 (531)
T ss_pred cccccHHHHHHHHHHHHHhhh-hHHHHHHHhC----CCCHHHHHHHHHcCC
Confidence 458999999999999999997 9999998864 899999988887663
No 27
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=89.05 E-value=0.54 Score=50.63 Aligned_cols=80 Identities=16% Similarity=0.269 Sum_probs=61.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhccccccccCCCCCcccccCCCCHHH
Q 014780 286 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPKPV 365 (419)
Q Consensus 286 RK~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas~~p~~~r~~~~rK~~~~~iP~~l 365 (419)
.+..-.|+..|++.|..+|++||.-+|+.|...|. .||+-|++-+|-|.+.... .++. .-.+.
T Consensus 17 ~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~----~~~~kq~~~rw~~~lnp~l----k~~~---------~~~ee 79 (512)
T COG5147 17 KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI----SSTGKQSSNRWNNHLNPQL----KKKN---------WSEEE 79 (512)
T ss_pred eecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc----ccccccccchhhhhhchhc----cccc---------ccHHH
Confidence 33455899999999999999999999999998875 5999999999955543321 2222 35677
Q ss_pred HHHHHHHHhhCCC-CCCc
Q 014780 366 LCRIRELATIHPY-PRVP 382 (419)
Q Consensus 366 L~RVreLa~~hpy-p~~~ 382 (419)
..++..|+..+++ |..-
T Consensus 80 d~~li~l~~~~~~~wsti 97 (512)
T COG5147 80 DEQLIDLDKELGTQWSTI 97 (512)
T ss_pred HHHHHHHHHhcCchhhhh
Confidence 7888888888877 6533
No 28
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=88.42 E-value=0.98 Score=36.20 Aligned_cols=50 Identities=22% Similarity=0.383 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHHhhc---C---CCC--hHHHHHHhcCCCCCCChhhHHHHHHHhhhc
Q 014780 289 QRMWTLSEVMKLIDGISQF---G---VGK--WTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~Ky---G---~Gk--Wk~Il~~~f~~f~~RT~VDLKDKWRNLlKa 341 (419)
|.++|.+|+.+|++-|.++ | .|+ |+++...+. ..+|-.-++|+|+--++.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~---t~HtwQSwR~Ry~K~L~~ 59 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHP---TRHTWQSWRDRYLKHLRG 59 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-S---SS--SHHHHHHHHHHT--
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhc
Confidence 5689999999999999655 3 343 888777654 489999999999766654
No 29
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=87.30 E-value=1.3 Score=48.82 Aligned_cols=57 Identities=28% Similarity=0.551 Sum_probs=45.2
Q ss_pred CCCCCCCHHHHHHHHHHHh-------hc------------------CCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh-
Q 014780 287 KNQRMWTLSEVMKLIDGIS-------QF------------------GVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR- 340 (419)
Q Consensus 287 K~rr~WT~EEveaLv~GV~-------Ky------------------G~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK- 340 (419)
+.+.+||.||.+.|++.|+ .| -.-+|..|-+.. ..|+.++|+-||-.|+.
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~----~TR~~~qCr~Kw~kl~~~ 509 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEML----GTRSRIQCRYKWYKLTTS 509 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhh----cCCCcchHHHHHHHHHhh
Confidence 5678999999999999996 44 123899999843 59999999999999996
Q ss_pred ccccccc
Q 014780 341 ASYAHQK 347 (419)
Q Consensus 341 as~~p~~ 347 (419)
+++...+
T Consensus 510 ~s~n~~~ 516 (607)
T KOG0051|consen 510 PSFNKRQ 516 (607)
T ss_pred HHhhccc
Confidence 4444433
No 30
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=83.46 E-value=1.9 Score=34.58 Aligned_cols=50 Identities=26% Similarity=0.496 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHhhc---C----CC-----ChHHHHHHhcCCC-CCCChhhHHHHHHHhhh
Q 014780 291 MWTLSEVMKLIDGISQF---G----VG-----KWTDIKRLLFSSS-SHRTPIDLRDKWRNLLR 340 (419)
Q Consensus 291 ~WT~EEveaLv~GV~Ky---G----~G-----kWk~Il~~~f~~f-~~RT~VDLKDKWRNLlK 340 (419)
.||+++++.|++.+... | .| .|..|...+...+ ..-|..+||.||..|.+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999988544 2 22 3888888764333 46688999999999986
No 31
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=82.00 E-value=1 Score=42.70 Aligned_cols=63 Identities=22% Similarity=0.463 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHh-cCCC--CCCC------hhhHHHHH-----HHhhhccccccccCC
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLL-FSSS--SHRT------PIDLRDKW-----RNLLRASYAHQKNKG 350 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~-f~~f--~~RT------~VDLKDKW-----RNLlKas~~p~~~r~ 350 (419)
....|-..-+-+|+.||-+||-|+|.+|.++- |.++ .=++ ..+.|.|+ +-|..+-.++.|-++
T Consensus 2 ~~~iw~r~hdywll~gi~~hgy~rwqdi~nd~~f~IiNEPFk~e~~kgnfle~KNkFLaRRfKLLEQaLvIEEqLrR 78 (173)
T PF08074_consen 2 EYEIWHRRHDYWLLAGIVKHGYGRWQDIQNDPRFAIINEPFKTESQKGNFLEMKNKFLARRFKLLEQALVIEEQLRR 78 (173)
T ss_pred hhhhhhhhhhHHHHhHHhhccchhHHHHhcCCceeeecccccccccccchHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 35568888888999999999999999999984 4442 1122 24777776 344445455555444
No 32
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=81.98 E-value=0.79 Score=48.31 Aligned_cols=52 Identities=27% Similarity=0.412 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhc-CCC-CCCChhhHHHHH----HHhhhcc
Q 014780 290 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLF-SSS-SHRTPIDLRDKW----RNLLRAS 342 (419)
Q Consensus 290 r~WT~EEveaLv~GV~KyG~GkWk~Il~~~f-~~f-~~RT~VDLKDKW----RNLlKas 342 (419)
..||.+|.+.|.+-.++|-. +|--|.+.|- +.| .+||--|||||| |+|+++.
T Consensus 131 n~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr 188 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKAR 188 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHcc
Confidence 56999999999999999998 9999999872 224 469999999999 5666654
No 33
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=76.97 E-value=5 Score=34.19 Aligned_cols=54 Identities=22% Similarity=0.368 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHHhhc----CCCC---hHHHHHHhcCCC-CCCChhhHHHHHHHhhhc
Q 014780 288 NQRMWTLSEVMKLIDGISQF----GVGK---WTDIKRLLFSSS-SHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~Ky----G~Gk---Wk~Il~~~f~~f-~~RT~VDLKDKWRNLlKa 341 (419)
-.|.||++++-.|++|+-.| |... |..........+ ..=|..||.||-|.|.+-
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~K 64 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKK 64 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 45679999999999999888 7554 444333321112 233778999999999963
No 34
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=75.43 E-value=4.7 Score=42.84 Aligned_cols=55 Identities=18% Similarity=0.366 Sum_probs=47.2
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhc
Q 014780 281 KIDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 281 ~~~~rRK~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa 341 (419)
..|+ ++..-+||.+|.+.+.+++..+|+ -+..|...|+ +|...++|-||.+--|.
T Consensus 358 t~g~-~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP----~R~RkqIKaKfi~Eek~ 412 (507)
T COG5118 358 TFGK-KKGALRWSKKEIEKFYKALSIWGT-DFSLISSLFP----NRERKQIKAKFIKEEKV 412 (507)
T ss_pred cccC-CCCCCcccHHHHHHHHHHHHHhcc-hHHHHHHhcC----chhHHHHHHHHHHHhhh
Confidence 3554 667889999999999999999998 8999998765 89999999999887764
No 35
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=65.33 E-value=3.4 Score=48.94 Aligned_cols=54 Identities=20% Similarity=0.217 Sum_probs=40.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCC--------CCCChhhHHHHHHHhhhc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSS--------SHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f--------~~RT~VDLKDKWRNLlKa 341 (419)
.---|..+++..|+-||-+||.|+|..|+.+-.--| ..=++++|.-+=.-|++.
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~~~e~~P~a~~L~~R~~yLls~ 1193 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIFLVETVPQAKHLQRRADYLLSL 1193 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhcccccCCchHHHHHHHHHHHHH
Confidence 455699999999999999999999999998742112 133466777776666654
No 36
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=49.14 E-value=19 Score=39.65 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 014780 289 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 340 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 340 (419)
+--|+.+|++.|+....-+-. .|..|.... +||+.+|-.+|-||+-
T Consensus 59 ~tews~eederlLhlakl~p~-qwrtIa~i~-----gr~~~qc~eRy~~ll~ 104 (617)
T KOG0050|consen 59 KTEWSREEDERLLHLAKLEPT-QWRTIADIM-----GRTSQQCLERYNNLLD 104 (617)
T ss_pred hhhhhhhHHHHHHHHHHhcCC-ccchHHHHh-----hhhHHHHHHHHHHHHH
Confidence 346999999999999988876 999999765 8999999999999984
No 37
>cd01187 INT_SG4 INT_SG4, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 4, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases for which not much biochemical characterization is available.
Probab=45.41 E-value=57 Score=30.38 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=48.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCC------ChHHHHHHhcCCCCCCChhhHHHHHHHhhhc-cccccccCCCCCcccccCC
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVG------KWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA-SYAHQKNKGEVDPKHAMRS 360 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~G------kWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa-s~~p~~~r~~~~rK~~~~~ 360 (419)
..+.||.+|+.+|++++..+... .|..|...... ..-|..-=+.=+|..+-.. ....-. ..+. .+...+|
T Consensus 98 ~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~~~~~i~ll~~-tGlR~~E~~~L~~~did~~~~~i~i~-~~K~-~~~r~vp 174 (299)
T cd01187 98 TPYIYTDEEIQRLLAAALQLPPTSGLRPWTYRTLFGLLAV-TGLRLGEALRLRLSDVDLDSGILTVR-DSKF-GKSRLVP 174 (299)
T ss_pred CCccCCHHHHHHHHHHHHhCCCCCCchhhHHHHHHHHHHH-hCCcHHHHHhCcHHhcCCCCCeEEEE-ecCC-CCccEEe
Confidence 34579999999999999877643 35555544211 2456555555566554321 111111 1111 2334689
Q ss_pred CCHHHHHHHHHHH
Q 014780 361 LPKPVLCRIRELA 373 (419)
Q Consensus 361 iP~~lL~RVreLa 373 (419)
+|+++.+-+.+..
T Consensus 175 l~~~l~~~l~~~~ 187 (299)
T cd01187 175 LHASTRAALRDYL 187 (299)
T ss_pred CCHHHHHHHHHHH
Confidence 9999888777653
No 38
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=37.82 E-value=74 Score=29.06 Aligned_cols=52 Identities=23% Similarity=0.182 Sum_probs=41.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhh
Q 014780 287 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 339 (419)
Q Consensus 287 K~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLl 339 (419)
+..++=|..|++.+..-|++||. .+..+..+---+.--.|.-+|+.+.+.+.
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 56778999999999999999996 78877776542345789999998887654
No 39
>smart00595 MADF subfamily of SANT domain.
Probab=36.69 E-value=35 Score=27.10 Aligned_cols=25 Identities=24% Similarity=0.541 Sum_probs=20.8
Q ss_pred ChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 014780 311 KWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 340 (419)
Q Consensus 311 kWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 340 (419)
-|..|..... -|..+|+-||+||-.
T Consensus 29 aW~~Ia~~l~-----~~~~~~~~kw~~LR~ 53 (89)
T smart00595 29 AWEEIAEELG-----LSVEECKKRWKNLRD 53 (89)
T ss_pred HHHHHHHHHC-----cCHHHHHHHHHHHHH
Confidence 4999988764 299999999999974
No 40
>cd02135 Arsenite_oxidase Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase. NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a beta-proteobacterial strain is able to oxidize arsenite to arsenate.
Probab=27.50 E-value=71 Score=27.30 Aligned_cols=35 Identities=17% Similarity=0.007 Sum_probs=28.5
Q ss_pred cccccCCCCHHHHHHHHHHHhhCCCCCCcCCCccC
Q 014780 354 PKHAMRSLPKPVLCRIRELATIHPYPRVPYSKKCN 388 (419)
Q Consensus 354 rK~~~~~iP~~lL~RVreLa~~hpyp~~~~~~~~~ 388 (419)
|+....|+|.+.|.+|.+.|..-|-+.+.++-+|.
T Consensus 11 R~f~~~~v~~e~l~~il~aA~~APs~~n~Qpw~f~ 45 (160)
T cd02135 11 KKLTLPAPDREQLEQILEAAARAPDHGKLEPWRFI 45 (160)
T ss_pred hhcCCCCCCHHHHHHHHHHHHhCCCcCCccCeEEE
Confidence 44445679999999999999999988887776664
No 41
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=25.50 E-value=80 Score=29.32 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=16.4
Q ss_pred CCCHHHHHHHHHHHhhCCC
Q 014780 360 SLPKPVLCRIRELATIHPY 378 (419)
Q Consensus 360 ~iP~~lL~RVreLa~~hpy 378 (419)
.+|.++|++|..+|+..=+
T Consensus 88 tVPA~lLe~vl~~A~~~L~ 106 (139)
T PF07128_consen 88 TVPADLLERVLRLAEQALW 106 (139)
T ss_pred cccHHHHHHHHHHHHHHHh
Confidence 4899999999999987654
No 42
>PLN03162 golden-2 like transcription factor; Provisional
Probab=23.16 E-value=1.9e+02 Score=31.25 Aligned_cols=54 Identities=22% Similarity=0.307 Sum_probs=40.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCC--ChHHHHHHhcCCCCCCChhhHH---HHHHHhhh
Q 014780 285 RRKNQRMWTLSEVMKLIDGISQFGVG--KWTDIKRLLFSSSSHRTPIDLR---DKWRNLLR 340 (419)
Q Consensus 285 rRK~rr~WT~EEveaLv~GV~KyG~G--kWk~Il~~~f~~f~~RT~VDLK---DKWRNLlK 340 (419)
++|.|..||.|=-+.++++|++.|.- .=+.|++... ..+=|.-++| .|||..+|
T Consensus 233 ~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMn--V~GLTRenVKSHLQKYRl~rk 291 (526)
T PLN03162 233 KKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMG--VQCLTRHNIASHLQKYRSHRR 291 (526)
T ss_pred CCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcC--CCCcCHHHHHHHHHHHHHhcc
Confidence 46788999999999999999999953 2466777653 3555666665 67887765
No 43
>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]
Probab=22.93 E-value=45 Score=36.72 Aligned_cols=53 Identities=17% Similarity=0.392 Sum_probs=37.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhh
Q 014780 286 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 339 (419)
Q Consensus 286 RK~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLl 339 (419)
|-.---||..|...+-++++|||. ...+|.++|.+--.-+.-|.-.=-|++--
T Consensus 282 RDemEEWSasEanLFEeALeKyGK-DFndIrqdfLPWKSl~sIveyYYmwKttd 334 (693)
T KOG3554|consen 282 RDEMEEWSASEANLFEEALEKYGK-DFNDIRQDFLPWKSLTSIVEYYYMWKTTD 334 (693)
T ss_pred hhhhhhccchhhHHHHHHHHHhcc-cHHHHHHhhcchHHHHHHHHHHHHHhhhh
Confidence 345667999999999999999998 89999998754223444555444444433
No 44
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=22.86 E-value=82 Score=24.04 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=20.2
Q ss_pred ChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 014780 311 KWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 340 (419)
Q Consensus 311 kWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 340 (419)
-|..|...+.. .-+..+|+.+|++|..
T Consensus 28 aw~~Ia~~l~~---~~~~~~~~~~w~~Lr~ 54 (85)
T PF10545_consen 28 AWQEIARELGK---EFSVDDCKKRWKNLRD 54 (85)
T ss_pred HHHHHHHHHcc---chhHHHHHHHHHHHHH
Confidence 48888877642 3457789999999885
No 45
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=22.26 E-value=24 Score=29.84 Aligned_cols=44 Identities=30% Similarity=0.496 Sum_probs=27.4
Q ss_pred ccCcccccccccccchhhhhhhcccCCCCCCCCccCCCCCCCCCCCCCCCc
Q 014780 49 AANDLSTVCDDFLLDIEFTEKVAKFDCGPVEGSHLGNSSSESHSPGASGSN 99 (419)
Q Consensus 49 ~~~~~s~ac~~~~ld~~~a~~~~~l~~gp~~~s~l~nssses~spg~sgs~ 99 (419)
-.|+|+..|+.+-+| +.+.+.-+...|..+.++- -++|||+|+-
T Consensus 21 f~Nel~~lce~~giD--~~~V~~~~~~d~ri~~~~~-----~pg~g~GG~C 64 (96)
T PF00984_consen 21 FANELARLCEKLGID--VYEVIEAANTDPRIGPHYL-----RPGPGFGGSC 64 (96)
T ss_dssp HHHHHHHHHHHHTSB--HHHHHHHHHTSTTTTSSS------S-SSS--SSC
T ss_pred HHHHHHHHHHHcCCC--HHHHHHHHccCcccccccC-----CCCCCCCCcc
Confidence 468899999998655 4555566666788763222 4567888874
No 46
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=22.12 E-value=1.7e+02 Score=32.26 Aligned_cols=49 Identities=18% Similarity=0.356 Sum_probs=38.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa 341 (419)
.+..||.||...|-.+.+.||. +..+|.+..+ +|+-.-|-.=|.++.|.
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK-~F~kIrq~LP----~rsLaSlvqyYy~~KK~ 234 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGK-DFHKIRQALP----HRSLASLVQYYYSWKKT 234 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcc-cHHHHHHHcc----CccHHHHHHHHHHHHHH
Confidence 3567999999999999999998 9999998865 66666666555555553
No 47
>cd01192 INT_P22_C P22-like integrases, site-specific recombinases, DNA breaking-rejoining enzymes, C-terminal catalytic domain. This CD includes various bacterial and phage integrases, including those similar to phage P22-like integrases, DLP12 and APSE-1.
Probab=20.03 E-value=1.8e+02 Score=24.87 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=44.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhc-c--ccccccCCCCCcccccCCCCH
Q 014780 287 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA-S--YAHQKNKGEVDPKHAMRSLPK 363 (419)
Q Consensus 287 K~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa-s--~~p~~~r~~~~rK~~~~~iP~ 363 (419)
|..+.||.+|+++|+.++. ..+..+....+. ..-|..-=+.=+|..+-.. . .+.....+ . .+....|+|+
T Consensus 2 ~~~~~lt~~e~~~l~~~~~----~~~~~~~~l~~~-tG~R~~El~~l~~~did~~~~~~~i~~~~~K-~-~~~r~ipl~~ 74 (177)
T cd01192 2 KRVRWLTPEEAERLIAELP----PHLKPAVLFALN-TGLRRSEILGLEWSQVDLDNRVAWVRPATSK-G-GRAIRVPLND 74 (177)
T ss_pred CccCCCCHHHHHHHHHhcc----HHHHHHHHHHHH-hCccHHHHhcCchhhccccCCEEEEeccCCC-C-CCeeEecCCH
Confidence 3456899999999999886 234444433211 1344444444456554321 1 11111111 1 2334588999
Q ss_pred HHHHHHHHHHh
Q 014780 364 PVLCRIRELAT 374 (419)
Q Consensus 364 ~lL~RVreLa~ 374 (419)
.+..-+.++-.
T Consensus 75 ~~~~~l~~~~~ 85 (177)
T cd01192 75 EALQVLKRQKA 85 (177)
T ss_pred HHHHHHHHHhc
Confidence 98887777653
Done!