Query 014780
Match_columns 419
No_of_seqs 151 out of 386
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 17:41:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aje_A Telomere repeat-binding 99.9 1.2E-25 4E-30 190.1 6.3 95 284-388 8-102 (105)
2 2roh_A RTBP1, telomere binding 99.9 1.3E-23 4.3E-28 181.9 8.2 94 284-387 26-119 (122)
3 2ckx_A NGTRF1, telomere bindin 99.9 1.1E-23 3.9E-28 171.1 5.9 81 290-380 1-81 (83)
4 2juh_A Telomere binding protei 99.9 1E-22 3.5E-27 176.1 7.9 95 283-387 11-105 (121)
5 1x58_A Hypothetical protein 49 99.7 5.5E-18 1.9E-22 132.4 6.6 55 286-342 5-59 (62)
6 3sjm_A Telomeric repeat-bindin 99.6 2.5E-16 8.5E-21 121.7 6.8 55 287-343 9-63 (64)
7 1ity_A TRF1; helix-turn-helix, 99.5 2E-14 6.9E-19 110.9 7.6 60 284-345 5-64 (69)
8 1w0t_A Telomeric repeat bindin 99.5 2.3E-14 7.8E-19 105.6 6.6 51 289-341 2-52 (53)
9 1guu_A C-MYB, MYB proto-oncoge 99.2 1.7E-11 5.9E-16 89.4 6.0 49 289-341 3-51 (52)
10 2d9a_A B-MYB, MYB-related prot 99.2 4.2E-11 1.4E-15 89.8 6.7 54 286-343 5-58 (60)
11 1gvd_A MYB proto-oncogene prot 99.1 5.9E-11 2E-15 86.7 5.7 49 289-341 3-51 (52)
12 1x41_A Transcriptional adaptor 99.1 1.7E-10 5.9E-15 87.0 6.5 51 288-342 7-57 (60)
13 2dim_A Cell division cycle 5-l 99.1 2E-10 7E-15 88.6 6.3 53 287-343 7-59 (70)
14 2elk_A SPCC24B10.08C protein; 99.0 4.9E-10 1.7E-14 84.3 6.4 48 289-339 9-56 (58)
15 2yus_A SWI/SNF-related matrix- 98.9 1.5E-09 5.1E-14 87.1 6.4 52 282-338 11-62 (79)
16 2cu7_A KIAA1915 protein; nucle 98.9 3.5E-09 1.2E-13 82.4 6.4 50 288-342 8-57 (72)
17 2din_A Cell division cycle 5-l 98.8 3.4E-09 1.2E-13 80.8 5.8 50 288-343 8-57 (66)
18 2yum_A ZZZ3 protein, zinc fing 98.8 6.3E-09 2.1E-13 81.0 6.1 50 288-341 7-61 (75)
19 1gv2_A C-MYB, MYB proto-oncoge 98.8 6.9E-09 2.4E-13 84.6 5.7 50 289-342 4-53 (105)
20 2k9n_A MYB24; R2R3 domain, DNA 98.7 1.3E-08 4.4E-13 83.9 6.0 49 290-342 2-50 (107)
21 3osg_A MYB21; transcription-DN 98.7 1.7E-08 5.7E-13 85.5 6.3 52 286-342 8-59 (126)
22 1h8a_C AMV V-MYB, MYB transfor 98.7 2.2E-08 7.5E-13 84.6 6.2 51 288-342 26-76 (128)
23 2llk_A Cyclin-D-binding MYB-li 98.7 2.1E-08 7.2E-13 79.8 5.5 49 287-341 21-69 (73)
24 3zqc_A MYB3; transcription-DNA 98.6 4.7E-08 1.6E-12 83.1 6.5 53 288-345 53-105 (131)
25 1gv2_A C-MYB, MYB proto-oncoge 98.6 3.8E-08 1.3E-12 80.2 5.6 49 288-341 55-103 (105)
26 3osg_A MYB21; transcription-DN 98.6 4E-08 1.4E-12 83.2 5.8 55 288-347 61-115 (126)
27 3zqc_A MYB3; transcription-DNA 98.6 3.1E-08 1.1E-12 84.2 4.6 50 289-342 2-51 (131)
28 2k9n_A MYB24; R2R3 domain, DNA 98.6 6.7E-08 2.3E-12 79.6 6.3 49 288-341 52-100 (107)
29 2cqr_A RSGI RUH-043, DNAJ homo 98.6 5.3E-08 1.8E-12 77.4 5.0 51 286-340 15-68 (73)
30 1h8a_C AMV V-MYB, MYB transfor 98.5 1.1E-07 3.6E-12 80.4 5.2 49 288-341 78-126 (128)
31 1h89_C C-MYB, MYB proto-oncoge 98.4 2.1E-07 7.1E-12 81.0 5.9 50 288-341 57-106 (159)
32 2ltp_A Nuclear receptor corepr 97.7 3.9E-08 1.3E-12 79.9 0.0 50 288-342 15-64 (89)
33 1h89_C C-MYB, MYB proto-oncoge 98.3 6.4E-07 2.2E-11 78.0 5.1 49 288-341 109-157 (159)
34 2cjj_A Radialis; plant develop 98.2 1.3E-06 4.5E-11 72.3 5.9 48 289-340 8-58 (93)
35 2eqr_A N-COR1, N-COR, nuclear 98.0 1.1E-05 3.8E-10 61.2 7.0 52 284-340 7-58 (61)
36 1ign_A Protein (RAP1); RAP1,ye 97.9 7.6E-06 2.6E-10 78.3 4.6 52 288-343 7-63 (246)
37 3hm5_A DNA methyltransferase 1 97.8 2.9E-05 9.9E-10 64.7 6.2 51 290-341 31-82 (93)
38 2cqq_A RSGI RUH-037, DNAJ homo 97.8 4.5E-05 1.5E-09 60.4 6.2 49 288-341 7-58 (72)
39 2ebi_A DNA binding protein GT- 97.4 6.4E-05 2.2E-09 59.7 2.6 53 288-341 3-65 (86)
40 1wgx_A KIAA1903 protein; MYB D 97.4 0.00033 1.1E-08 56.1 6.2 49 289-341 8-59 (73)
41 2iw5_B Protein corest, REST co 97.3 0.00032 1.1E-08 66.9 6.2 50 286-340 130-179 (235)
42 4iej_A DNA methyltransferase 1 97.1 0.0009 3.1E-08 56.0 6.1 50 290-340 31-81 (93)
43 4b4c_A Chromodomain-helicase-D 97.0 0.0008 2.7E-08 60.3 6.0 53 289-341 134-196 (211)
44 2yqk_A Arginine-glutamic acid 96.8 0.0034 1.2E-07 47.9 6.9 52 286-341 6-57 (63)
45 2crg_A Metastasis associated p 96.8 0.0041 1.4E-07 48.6 7.4 58 286-347 5-62 (70)
46 4b4c_A Chromodomain-helicase-D 96.6 0.0037 1.3E-07 56.0 6.5 54 286-341 4-59 (211)
47 1fex_A TRF2-interacting telome 96.5 0.0027 9.2E-08 48.4 4.6 49 289-340 2-58 (59)
48 1ofc_X ISWI protein; nuclear p 96.2 0.0034 1.2E-07 61.5 4.3 53 289-341 212-275 (304)
49 2xb0_X Chromo domain-containin 96.0 0.0033 1.1E-07 60.6 3.5 30 290-319 169-198 (270)
50 1irz_A ARR10-B; helix-turn-hel 95.6 0.036 1.2E-06 43.5 6.9 54 285-340 3-61 (64)
51 2xag_B REST corepressor 1; ami 95.5 0.017 5.9E-07 59.8 6.2 50 286-340 377-426 (482)
52 2y9y_A Imitation switch protei 95.1 0.016 5.6E-07 58.3 4.8 54 289-342 228-292 (374)
53 4eef_G F-HB80.4, designed hema 94.0 0.014 4.8E-07 47.2 0.9 43 289-335 20-65 (74)
54 4a69_C Nuclear receptor corepr 93.0 0.095 3.3E-06 43.0 4.3 50 286-340 40-89 (94)
55 2xb0_X Chromo domain-containin 90.9 0.34 1.2E-05 46.7 6.2 53 288-342 2-56 (270)
56 1ug2_A 2610100B20RIK gene prod 86.5 2 6.9E-05 36.2 7.1 53 286-342 30-84 (95)
57 1ign_A Protein (RAP1); RAP1,ye 79.4 2.4 8.3E-05 40.7 5.5 29 310-342 172-200 (246)
58 2lr8_A CAsp8-associated protei 78.8 0.49 1.7E-05 38.0 0.0 49 288-341 13-63 (70)
59 3ukx_C Bimax2 peptide; arm rep 56.5 5.7 0.0002 26.5 1.9 11 257-267 10-20 (28)
60 3ukw_C Bimax1 peptide; arm rep 56.0 6.3 0.00021 26.3 2.0 16 245-264 2-17 (28)
61 1ofc_X ISWI protein; nuclear p 54.1 12 0.00043 36.6 4.7 48 289-340 110-157 (304)
62 2xag_B REST corepressor 1; ami 46.0 4.3 0.00015 42.2 0.0 46 289-339 189-234 (482)
63 2q2k_A Hypothetical protein; p 35.1 8.3 0.00028 30.2 0.1 22 183-204 48-69 (70)
64 3lqv_P Splicing factor 3B subu 20.2 33 0.0011 24.8 0.9 14 288-301 19-32 (39)
No 1
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.92 E-value=1.2e-25 Score=190.10 Aligned_cols=95 Identities=26% Similarity=0.581 Sum_probs=82.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhccccccccCCCCCcccccCCCCH
Q 014780 284 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPK 363 (419)
Q Consensus 284 ~rRK~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas~~p~~~r~~~~rK~~~~~iP~ 363 (419)
..|+++++||+||+++|++||++||.|+|++|+..+|..|.+||.+|||||||||+|.+.++.+.+++ .|||+
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg-------~~~P~ 80 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRG-------EPVPQ 80 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTC-------CSCCC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccC-------CCCCH
Confidence 36788999999999999999999999999999999988899999999999999999977765554443 36999
Q ss_pred HHHHHHHHHHhhCCCCCCcCCCccC
Q 014780 364 PVLCRIRELATIHPYPRVPYSKKCN 388 (419)
Q Consensus 364 ~lL~RVreLa~~hpyp~~~~~~~~~ 388 (419)
++|+||++ +|+||.+.+.|.-.
T Consensus 81 ~~l~rv~~---~~~~~~~~~~~~~~ 102 (105)
T 2aje_A 81 ELLNRVLN---AHGYWTQQQMQQLQ 102 (105)
T ss_dssp HHHHHHHH---HHHHHHHHTTTTSS
T ss_pred HHHHHHHH---HHHHHHHHHHHHHh
Confidence 99999999 77888887777544
No 2
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.89 E-value=1.3e-23 Score=181.95 Aligned_cols=94 Identities=29% Similarity=0.577 Sum_probs=81.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhccccccccCCCCCcccccCCCCH
Q 014780 284 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPK 363 (419)
Q Consensus 284 ~rRK~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas~~p~~~r~~~~rK~~~~~iP~ 363 (419)
.+||++++||.||+++|++||++||.|+|++|+..+|..|.+||.+|||||||||+|.+.+..+.+++ .++|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~-------~~~p~ 98 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRG-------APVPQ 98 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCC-------SSCCH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCC-------CCCCH
Confidence 46888999999999999999999999999999999888889999999999999999877665554432 35899
Q ss_pred HHHHHHHHHHhhCCCCCCcCCCcc
Q 014780 364 PVLCRIRELATIHPYPRVPYSKKC 387 (419)
Q Consensus 364 ~lL~RVreLa~~hpyp~~~~~~~~ 387 (419)
+++++|++ +|.||.+++++..
T Consensus 99 e~~~~v~~---~h~~~g~~~~~~~ 119 (122)
T 2roh_A 99 ELLDRVLA---AQAYWSVDSSGRI 119 (122)
T ss_dssp HHHHHHHH---HHHHHHSSCSCCC
T ss_pred HHHHHHHH---HHHHHhhHHhhhh
Confidence 99999998 7777888877754
No 3
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.88 E-value=1.1e-23 Score=171.06 Aligned_cols=81 Identities=30% Similarity=0.668 Sum_probs=70.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhccccccccCCCCCcccccCCCCHHHHHHH
Q 014780 290 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLPKPVLCRI 369 (419)
Q Consensus 290 r~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas~~p~~~r~~~~rK~~~~~iP~~lL~RV 369 (419)
++||+||+++|++||++||.|+|++|++.+|..|.+||.+|||||||||+|.+..+.+.+++ .|+|+++++||
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~-------~~~p~~~~~rv 73 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG-------EPVPQDLLDRV 73 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCS-------SCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccC-------CCCCHHHHHHH
Confidence 58999999999999999999999999999887789999999999999999987765554432 46999999999
Q ss_pred HHHHhhCCCCC
Q 014780 370 RELATIHPYPR 380 (419)
Q Consensus 370 reLa~~hpyp~ 380 (419)
++ +|+||.
T Consensus 74 ~~---~~a~~~ 81 (83)
T 2ckx_A 74 LA---AHAYWS 81 (83)
T ss_dssp HH---HHHHHH
T ss_pred HH---HHHHHh
Confidence 99 555654
No 4
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.87 E-value=1e-22 Score=176.07 Aligned_cols=95 Identities=27% Similarity=0.585 Sum_probs=82.5
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhccccccccCCCCCcccccCCCC
Q 014780 283 DDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQKNKGEVDPKHAMRSLP 362 (419)
Q Consensus 283 ~~rRK~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas~~p~~~r~~~~rK~~~~~iP 362 (419)
.+.++++++||.||+++|++||++||.|+|++|+..++.+|.+||.+|||||||||++.+.++.+.+++ .++|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg-------~~~p 83 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG-------EPVP 83 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCC-------SCCC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCC-------CCCC
Confidence 356888999999999999999999999999999999988889999999999999999977765444332 3599
Q ss_pred HHHHHHHHHHHhhCCCCCCcCCCcc
Q 014780 363 KPVLCRIRELATIHPYPRVPYSKKC 387 (419)
Q Consensus 363 ~~lL~RVreLa~~hpyp~~~~~~~~ 387 (419)
++++++|++ +|.||.|+.++..
T Consensus 84 ~e~~~rv~~---~h~~~gn~~~~~~ 105 (121)
T 2juh_A 84 QDLLDRVLA---AHAYWSQQQGKQH 105 (121)
T ss_dssp HHHHHHHHH---HHHHHHHHHCCSC
T ss_pred HHHHHHHHH---HHHHHccchhccC
Confidence 999999998 7788888888853
No 5
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=5.5e-18 Score=132.36 Aligned_cols=55 Identities=24% Similarity=0.425 Sum_probs=50.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhcc
Q 014780 286 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 342 (419)
Q Consensus 286 RK~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas 342 (419)
.+.+++||+||+++|++||++||. +|++|+..|.. |.+||.||||||||||+|..
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f-~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPF-QKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCC-CTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCC-ccCcccchHHHHHHHHHhcc
Confidence 347889999999999999999999 99999999853 78999999999999999854
No 6
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.64 E-value=2.5e-16 Score=121.70 Aligned_cols=55 Identities=25% Similarity=0.622 Sum_probs=49.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhccc
Q 014780 287 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 343 (419)
Q Consensus 287 K~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas~ 343 (419)
+++++||+||+++|+++|++||.++|+.|.+.++ |.+||++||+|||+||+|.+.
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP--FVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcC--CCCCCHHHHHHHHHHHhccCC
Confidence 3467899999999999999999999999999875 579999999999999999764
No 7
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.52 E-value=2e-14 Score=110.93 Aligned_cols=60 Identities=25% Similarity=0.587 Sum_probs=53.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhccccc
Q 014780 284 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAH 345 (419)
Q Consensus 284 ~rRK~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas~~p 345 (419)
..++++.+||+||+++|+++|++||.++|+.|...+. |.+||.+||+++|+|+++.....
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcC--cCCCCHHHHHHHHHHHcCCCCCC
Confidence 3577889999999999999999999999999998764 45999999999999999987653
No 8
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.51 E-value=2.3e-14 Score=105.61 Aligned_cols=51 Identities=27% Similarity=0.644 Sum_probs=47.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhc
Q 014780 289 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa 341 (419)
+.+||+||++.|+++|++||.++|+.|...+. |.+||++||+++|+|++|+
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~--~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC--CCCCCHHHHHHHHHHHHcc
Confidence 57899999999999999999999999999864 4589999999999999985
No 9
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.21 E-value=1.7e-11 Score=89.38 Aligned_cols=49 Identities=29% Similarity=0.557 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhc
Q 014780 289 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa 341 (419)
+.+||+||++.|+++|++||.++|+.|...+ .+||..+|+++|.+++.+
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYL----PNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS----TTCCHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc----CCCCHHHHHHHHHHHcCc
Confidence 5689999999999999999999999999764 589999999999999875
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.17 E-value=4.2e-11 Score=89.79 Aligned_cols=54 Identities=22% Similarity=0.394 Sum_probs=47.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhccc
Q 014780 286 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 343 (419)
Q Consensus 286 RK~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas~ 343 (419)
..++.+||+||++.|+++|++||.++|+.|...+ .+||..+|+++|.++++...
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHF----PNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHC----SSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc----cCCCHHHHHHHHHHHcCCcc
Confidence 3456789999999999999999999999999875 48999999999999998653
No 11
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.13 E-value=5.9e-11 Score=86.69 Aligned_cols=49 Identities=29% Similarity=0.591 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhc
Q 014780 289 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa 341 (419)
+.+||+||++.|+++|++||.++|..|...+ .+||..+|+++|.|.+++
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS----TTCCHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHc----CCCCHHHHHHHHHHHcCc
Confidence 5689999999999999999998999999764 599999999999999865
No 12
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.08 E-value=1.7e-10 Score=87.05 Aligned_cols=51 Identities=20% Similarity=0.515 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhcc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 342 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas 342 (419)
.+.+||+||++.|+++|++||.++|..|.+... +||..||+++|.+++..+
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~----~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC----TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT----TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC----CCCHHHHHHHHHHHccCC
Confidence 466899999999999999999999999998874 899999999999998643
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=2e-10 Score=88.57 Aligned_cols=53 Identities=21% Similarity=0.490 Sum_probs=47.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhccc
Q 014780 287 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 343 (419)
Q Consensus 287 K~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas~ 343 (419)
.++.+||+||++.|+++|++||.++|+.|...+ .+||..||+++|.|+++...
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~L~p~i 59 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLL----HRKSAKQCKARWYEWLDPSI 59 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHS----TTCCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHh----cCCCHHHHHHHHHHHcCCcc
Confidence 356789999999999999999999999999875 48999999999999998654
No 14
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.01 E-value=4.9e-10 Score=84.33 Aligned_cols=48 Identities=29% Similarity=0.556 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhh
Q 014780 289 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 339 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLl 339 (419)
+.+||++|++.|+++|++||.++|+.|.+... .+||..+|+++|.|+.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~---~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIADYVG---NARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHC---SSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHC---CCCCHHHHHHHHHHHc
Confidence 45799999999999999999999999998763 2899999999999874
No 15
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.92 E-value=1.5e-09 Score=87.06 Aligned_cols=52 Identities=17% Similarity=0.331 Sum_probs=46.2
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHh
Q 014780 282 IDDRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNL 338 (419)
Q Consensus 282 ~~~rRK~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNL 338 (419)
.+..+..+.+||.||++.|+++|++|| ++|..|.+... +||..+|+.+|.++
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~----~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG----SRTQDECILHFLRL 62 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence 344566678999999999999999999 89999998764 89999999999988
No 16
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.86 E-value=3.5e-09 Score=82.37 Aligned_cols=50 Identities=26% Similarity=0.592 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhcc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 342 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas 342 (419)
++.+||.||++.|+++|++||. +|+.|...+ .+||..+||.+|.++++..
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~----~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGR-RWTKISKLI----GSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH----SSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc----CCCCHHHHHHHHHHHHHHH
Confidence 5678999999999999999999 999999864 4899999999999999754
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=3.4e-09 Score=80.85 Aligned_cols=50 Identities=20% Similarity=0.352 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhccc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 343 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas~ 343 (419)
++.+||.||++.|++.|++||. +|+.|.. +. +||..+|+++|.++++...
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~----gRt~~qcr~Rw~~~l~~~~ 57 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II----GRTAAQCLEHYEFLLDKAA 57 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH----SSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc----CcCHHHHHHHHHHHhChHh
Confidence 4568999999999999999998 9999998 53 7999999999999998654
No 18
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=6.3e-09 Score=81.04 Aligned_cols=50 Identities=20% Similarity=0.370 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC-----CChHHHHHHhcCCCCCCChhhHHHHHHHhhhc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGV-----GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~-----GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa 341 (419)
.+.+||.||++.|+++|++||. ++|..|..... +||..||+++|.++++.
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~----~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG----NRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS----SSCHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC----CCCHHHHHHHHHHHHHH
Confidence 4568999999999999999996 79999998764 89999999999888864
No 19
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.77 E-value=6.9e-09 Score=84.60 Aligned_cols=50 Identities=26% Similarity=0.566 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhcc
Q 014780 289 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 342 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas 342 (419)
+.+||+||++.|+++|++||.++|..|.... .+||+.+|+++|+|++...
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~p~ 53 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLNPE 53 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS----TTCCHHHHHHHHHHTTCCC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh----cCCCHHHHHHHHHhccCCc
Confidence 5689999999999999999999999998654 5999999999999988643
No 20
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.73 E-value=1.3e-08 Score=83.93 Aligned_cols=49 Identities=27% Similarity=0.586 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhcc
Q 014780 290 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 342 (419)
Q Consensus 290 r~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas 342 (419)
.+||+||++.|+++|++||.++|..|.... .+||+.+|+++|.|.+.+.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~L~p~ 50 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLM----ITRNPRQCRERWNNYINPA 50 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHT----TTSCHHHHHHHHHHHSSSC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhc----CCCCHHHHHHHHHHHHccc
Confidence 579999999999999999999999999765 4899999999999998754
No 21
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.71 E-value=1.7e-08 Score=85.54 Aligned_cols=52 Identities=27% Similarity=0.485 Sum_probs=45.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhcc
Q 014780 286 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 342 (419)
Q Consensus 286 RK~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas 342 (419)
..++.+||+||++.|+.+|++||. +|..|.... .+||..+|+++|+|.+...
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~p~ 59 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATF----PNRNARQCRDRWKNYLAPS 59 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTC----TTCCHHHHHHHHHHHTSTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc----CCCCHHHHHHHHhhhcccc
Confidence 445678999999999999999998 999998754 5999999999999998643
No 22
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.68 E-value=2.2e-08 Score=84.57 Aligned_cols=51 Identities=29% Similarity=0.663 Sum_probs=45.8
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhcc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 342 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas 342 (419)
++.+||+||++.|+++|++||.++|..|.... .+||..+|+++|.|++...
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~p~ 76 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL----KGRIGKQCRERWHNHLNPE 76 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS----SSCCHHHHHHHHHHTTCSS
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh----cCCcHHHHHHHHHHhcccc
Confidence 45689999999999999999999999999765 4999999999999988643
No 23
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.67 E-value=2.1e-08 Score=79.80 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhc
Q 014780 287 KNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 287 K~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa 341 (419)
-++.+||+||++.|++.|++||. +|+.|.+. | +||..+||++|+.|.+.
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~----l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGN-DWATIGAA----L-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHH----H-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHH----h-CCCHHHHHHHHHHHHHH
Confidence 35678999999999999999998 69999976 4 89999999999988764
No 24
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.62 E-value=4.7e-08 Score=83.11 Aligned_cols=53 Identities=21% Similarity=0.476 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhccccc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAH 345 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas~~p 345 (419)
.+.+||.||++.|+++|.+||. +|+.|... |.+||..+||++|+++++.....
T Consensus 53 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 53 VKHAWTPEEDETIFRNYLKLGS-KWSVIAKL----IPGRTDNAIKNRWNSSISKRIST 105 (131)
T ss_dssp CCSCCCHHHHHHHHHHHHHSCS-CHHHHTTT----STTCCHHHHHHHHHHTTGGGCCC
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHHHhhc
Confidence 3458999999999999999995 99999864 35999999999999999866543
No 25
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.61 E-value=3.8e-08 Score=80.24 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa 341 (419)
++.+||+||++.|+.+|++||. +|+.|... |.+||..+||++|+++++.
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSS-CHHHHHTT----CTTCCHHHHHHHHHHHTC-
T ss_pred cccCCCHHHHHHHHHHHHHhCC-CHHHHHHH----cCCCCHHHHHHHHHHHHhc
Confidence 4568999999999999999996 99999964 3699999999999999874
No 26
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.61 E-value=4e-08 Score=83.23 Aligned_cols=55 Identities=24% Similarity=0.498 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhccccccc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQK 347 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas~~p~~ 347 (419)
.+.+||.||++.|+++|++||. +|+.|... |.+||..+||++|++|++.-..|..
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~----l~gRt~~~~k~rw~~l~~k~~~p~~ 115 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGR-QWAIIAKF----FPGRTDIHIKNRWVTISNKLGIPQT 115 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHTT----STTCCHHHHHHHHHHHHHHTTC---
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 4568999999999999999995 99999964 3599999999999999986555544
No 27
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.59 E-value=3.1e-08 Score=84.24 Aligned_cols=50 Identities=24% Similarity=0.456 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhcc
Q 014780 289 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 342 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas 342 (419)
+.+||+||++.|+.+|++||.++|..|.... .+||+.||+++|+|.+...
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~----~~Rt~~qcr~Rw~~~l~p~ 51 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFL----PNRSPKQCRERWFNHLDPA 51 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSC----TTSCHHHHHHHHHHHTSTT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHH----CCCCHHHHHHHHhhccCcc
Confidence 3579999999999999999999999998654 5999999999999998654
No 28
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.58 E-value=6.7e-08 Score=79.62 Aligned_cols=49 Identities=27% Similarity=0.624 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa 341 (419)
.+.+||+||++.|+.+|.+||. +|+.|...+ .+||..+||++|++|++.
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l----~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGP-KWNKISKFL----KNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH----SSSCHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCc-CHHHHHHHC----CCCCHHHHHHHHHHHHhh
Confidence 4579999999999999999997 999999865 499999999999999975
No 29
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.56 E-value=5.3e-08 Score=77.42 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=45.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 014780 286 RKNQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 340 (419)
Q Consensus 286 RK~rr~WT~EEveaLv~GV~KyG~---GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 340 (419)
+-...+||.+|...|+.+|++||. .+|..|.... .+||..+|+.+|.+|++
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v----pGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV----PSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC----SSSCHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc----CCCCHHHHHHHHHHHHH
Confidence 445678999999999999999994 5899999776 49999999999999986
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.49 E-value=1.1e-07 Score=80.37 Aligned_cols=49 Identities=24% Similarity=0.587 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa 341 (419)
++.+||+||++.|+++|++||. +|+.|...+ .+||..+||++|++++|.
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~~l----~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKLL----PGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHGGGS----TTCCHHHHHHHHHTTTTC
T ss_pred ccccCCHHHHHHHHHHHHHHCc-CHHHHHHHC----CCCCHHHHHHHHHHHHhc
Confidence 4678999999999999999997 999999653 599999999999999874
No 31
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.44 E-value=2.1e-07 Score=81.05 Aligned_cols=50 Identities=26% Similarity=0.546 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa 341 (419)
.+.+||+||++.|+.+|++||.++|+.|.... .+||..+|+++|.|++..
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l----~~Rt~~qcr~Rw~~~l~p 106 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL----KGRIGKQCRERWHNHLNP 106 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS----TTCCHHHHHHHHHHTTCT
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHc----CCCCHHHHHHHHHHHhCc
Confidence 45789999999999999999998999998654 599999999999999864
No 32
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.75 E-value=3.9e-08 Score=79.86 Aligned_cols=50 Identities=20% Similarity=0.384 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhcc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 342 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas 342 (419)
.+.+||.||++.|+++|++||. +|..|.... .+||..+|+.+|.++++..
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l----~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR-NWSAIARMV----GSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 4568999999999999999998 899998764 5999999999999998743
No 33
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.28 E-value=6.4e-07 Score=77.95 Aligned_cols=49 Identities=22% Similarity=0.552 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa 341 (419)
++.+||+||++.|+++|++||. +|+.|.+. |.+||..+||.+|..|+|.
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~-~W~~Ia~~----l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGN-RWAEIAKL----LPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCS-CHHHHHTT----STTCCHHHHHHHHHTTTCC
T ss_pred cccCCChHHHHHHHHHHHHHCC-CHHHHHHH----CCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999997 99999974 3699999999999999864
No 34
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.24 E-value=1.3e-06 Score=72.31 Aligned_cols=48 Identities=19% Similarity=0.498 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHhhcC---CCChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 014780 289 QRMWTLSEVMKLIDGISQFG---VGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 340 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~KyG---~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 340 (419)
..+||.||+..|+.++.+|| ..+|..|....+ +||..+|+.+|.+|++
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp----GRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVE----GRTPEEVKKHYEILVE 58 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST----TCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence 45899999999999999998 457999998764 8999999999999974
No 35
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=1.1e-05 Score=61.21 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=45.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 014780 284 DRRKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 340 (419)
Q Consensus 284 ~rRK~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 340 (419)
+.|+...+||++|.+.+++|+.+||. +|..|.... .+||..||...|....|
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l----~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYL----ERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHC----TTSCHHHHHHHHHHHTC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc----CCCCHHHHHHHHHHhcC
Confidence 45677889999999999999999996 999998543 59999999999987665
No 36
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.89 E-value=7.6e-06 Score=78.32 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCC-----hHHHHHHhcCCCCCCChhhHHHHHHHhhhccc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGVGK-----WTDIKRLLFSSSSHRTPIDLRDKWRNLLRASY 343 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~Gk-----Wk~Il~~~f~~f~~RT~VDLKDKWRNLlKas~ 343 (419)
.+.+||+||++.|++.|++||..+ |+.|... +.+||.-+||++|+++++...
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~----LpGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHY----VPNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTT----STTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHH----cCCCCHHHHHHHHHHHHhhhc
Confidence 456899999999999999999853 9999974 469999999999999998764
No 37
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.81 E-value=2.9e-05 Score=64.75 Aligned_cols=51 Identities=20% Similarity=0.336 Sum_probs=45.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhc-CCCCCCChhhHHHHHHHhhhc
Q 014780 290 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLF-SSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 290 r~WT~EEveaLv~GV~KyG~GkWk~Il~~~f-~~f~~RT~VDLKDKWRNLlKa 341 (419)
.+||.||++.|.+-+++||. +|..|.+.|. ..+..||..|||++|..+++.
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~ 82 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999998 9999999873 334689999999999888763
No 38
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.76 E-value=4.5e-05 Score=60.36 Aligned_cols=49 Identities=24% Similarity=0.466 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhcCCCCCCChhhHHHHHHHhhhc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~---GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa 341 (419)
....||.||...|.++|.+|+. .+|..|.... +||..|++.+|..|.+.
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-----gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-----GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-----TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-----CCCHHHHHHHHHHHHHh
Confidence 3568999999999999999994 5799999873 69999999999999875
No 39
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.40 E-value=6.4e-05 Score=59.72 Aligned_cols=53 Identities=28% Similarity=0.455 Sum_probs=41.7
Q ss_pred CCCCCCHHHHHHHHHHHhhcC----CC-----ChHHHHHHhcCC-CCCCChhhHHHHHHHhhhc
Q 014780 288 NQRMWTLSEVMKLIDGISQFG----VG-----KWTDIKRLLFSS-SSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG----~G-----kWk~Il~~~f~~-f~~RT~VDLKDKWRNLlKa 341 (419)
....||.+|+.+|+......- .+ .|..|....... + .||+.+|++||.||.+.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~-~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGF-DRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHH
Confidence 456799999999999987532 12 699998874211 2 79999999999999985
No 40
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.35 E-value=0.00033 Score=56.10 Aligned_cols=49 Identities=20% Similarity=0.411 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHhcCCCCCCChhhHHHHHHHhhhc
Q 014780 289 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~KyG~---GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa 341 (419)
...||.+|..+|..++..|+. ++|..|..... +||..+|+.+|.-|.+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~----gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG----SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT----TSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC----CCCHHHHHHHHHHHHhc
Confidence 357999999999999999986 68999998764 79999999999999764
No 41
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.28 E-value=0.00032 Score=66.88 Aligned_cols=50 Identities=18% Similarity=0.464 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 014780 286 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 340 (419)
Q Consensus 286 RK~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 340 (419)
.+...+||.+|.+.+++|+.+||. +|..|.+.. ..||..++|.-|.+..|
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~V----gTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVI----GNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHH----SSCCHHHHHHHHHHTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc----CCCCHHHHHHHHHHHHH
Confidence 456789999999999999999997 899999875 48999999999988775
No 42
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.06 E-value=0.0009 Score=55.97 Aligned_cols=50 Identities=20% Similarity=0.345 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHhc-CCCCCCChhhHHHHHHHhhh
Q 014780 290 RMWTLSEVMKLIDGISQFGVGKWTDIKRLLF-SSSSHRTPIDLRDKWRNLLR 340 (419)
Q Consensus 290 r~WT~EEveaLv~GV~KyG~GkWk~Il~~~f-~~f~~RT~VDLKDKWRNLlK 340 (419)
..||.||+..|.+-+++|+. +|-.|.+.|. ..+..||--|||++|-.+++
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999997 9999999973 34568999999999977664
No 43
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.04 E-value=0.0008 Score=60.32 Aligned_cols=53 Identities=21% Similarity=0.347 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhc---C------C-CCCCChhhHHHHHHHhhhc
Q 014780 289 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLF---S------S-SSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f---~------~-f~~RT~VDLKDKWRNLlKa 341 (419)
...||.+|+..|+.||.+||.|+|..|+.+-. . . ...++++.|..|--.|++.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 45799999999999999999999999999741 1 1 2456777888887666653
No 44
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.79 E-value=0.0034 Score=47.95 Aligned_cols=52 Identities=19% Similarity=0.400 Sum_probs=43.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhc
Q 014780 286 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 286 RK~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa 341 (419)
+-....||+||.....+|+.+||. +|..|.+.+ +..||..||..-|-...|.
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~---v~~Kt~~~~v~fYY~wKkt 57 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKEL---LPNKETGELITFYYYWKKT 57 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHS---CTTSCHHHHHHHHHHHHCS
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHH---cCCCcHHHHHHHHhcccCC
Confidence 445678999999999999999999 899998754 3589999999877655543
No 45
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.79 E-value=0.0041 Score=48.62 Aligned_cols=58 Identities=12% Similarity=0.256 Sum_probs=47.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhhccccccc
Q 014780 286 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRASYAHQK 347 (419)
Q Consensus 286 RK~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas~~p~~ 347 (419)
|+....||++|.....+|+.+||. +|..|.+.+ +..||..||..-|....|.....++
T Consensus 5 r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~---v~~Kt~~~~v~fYY~wKkt~~y~q~ 62 (70)
T 2crg_A 5 SSGMEEWSASEACLFEEALEKYGK-DFNDIRQDF---LPWKSLTSIIEYYYMWKTTDRYVQQ 62 (70)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTT---CSSSCHHHHHHHHHHHHTCCSSCSC
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHH---cCCCCHHHHHHHHHhhcCCchHHHH
Confidence 567889999999999999999999 899999743 3589999999998866665444333
No 46
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.56 E-value=0.0037 Score=55.98 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=43.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhcCCCCCCChhhHHHHHHHhhhc
Q 014780 286 RKNQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 286 RK~rr~WT~EEveaLv~GV~KyG--~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa 341 (419)
|.....||..|...|+.++.+|| .++|..|..+.. |..+|..++++=.+.++..
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~--L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAE--LVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTT--CTTSCHHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhc--cCCCCHHHHHHHHHHHHHH
Confidence 55678899999999999999999 689999999854 6799999999877766654
No 47
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.53 E-value=0.0027 Score=48.37 Aligned_cols=49 Identities=14% Similarity=0.307 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHhhc--------CCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 014780 289 QRMWTLSEVMKLIDGISQF--------GVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 340 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~Ky--------G~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 340 (419)
|.+||+||+.+|++-|.+| |.--|+.|.... +..+|-..++|+|+.-++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~---~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSS---LTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSC---SSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhH---CCCCCHHHHHHHHHHHcc
Confidence 5789999999999999999 545699998721 369999999999998664
No 48
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.16 E-value=0.0034 Score=61.54 Aligned_cols=53 Identities=17% Similarity=0.320 Sum_probs=46.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------cCC-CCCCChhhHHHHHHHhhhc
Q 014780 289 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~KyG~---GkWk~Il~~~-------f~~-f~~RT~VDLKDKWRNLlKa 341 (419)
.+.||.+|+..|+-++.+||. |.|..|+... |+. |..||+++|..+-..|+++
T Consensus 212 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ 275 (304)
T 1ofc_X 212 GKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITL 275 (304)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 448999999999999999999 9999998552 333 3899999999999999985
No 49
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=96.04 E-value=0.0033 Score=60.59 Aligned_cols=30 Identities=37% Similarity=0.675 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCChHHHHHHh
Q 014780 290 RMWTLSEVMKLIDGISQFGVGKWTDIKRLL 319 (419)
Q Consensus 290 r~WT~EEveaLv~GV~KyG~GkWk~Il~~~ 319 (419)
..|+.+|+..|+.||-+||.|+|..|+.+-
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp 198 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDDP 198 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCT
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcCc
Confidence 469999999999999999999999999985
No 50
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=95.56 E-value=0.036 Score=43.45 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=44.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCC--hHHHHHHhcCCCCCCChhhHH---HHHHHhhh
Q 014780 285 RRKNQRMWTLSEVMKLIDGISQFGVGK--WTDIKRLLFSSSSHRTPIDLR---DKWRNLLR 340 (419)
Q Consensus 285 rRK~rr~WT~EEveaLv~GV~KyG~Gk--Wk~Il~~~f~~f~~RT~VDLK---DKWRNLlK 340 (419)
.+|++..||+|.-+.++++|+++|..+ |+.|++... ..+.|..+++ .|||..++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~--v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMN--VDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999543 899998875 3688999888 56776554
No 51
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.46 E-value=0.017 Score=59.78 Aligned_cols=50 Identities=18% Similarity=0.427 Sum_probs=43.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 014780 286 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 340 (419)
Q Consensus 286 RK~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 340 (419)
.+..-+||.+|.+.+++||.+||. .|..|..... .||..++|.-|.+..+
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg----TKT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG----NKSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS----SCCHHHHHHHHHHTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC----CCCHHHHHHHHHHHHH
Confidence 345678999999999999999998 9999998764 8999999998866544
No 52
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.15 E-value=0.016 Score=58.30 Aligned_cols=54 Identities=17% Similarity=0.303 Sum_probs=47.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---CChHHHHHHh-------cCC-CCCCChhhHHHHHHHhhhcc
Q 014780 289 QRMWTLSEVMKLIDGISQFGV---GKWTDIKRLL-------FSS-SSHRTPIDLRDKWRNLLRAS 342 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~KyG~---GkWk~Il~~~-------f~~-f~~RT~VDLKDKWRNLlKas 342 (419)
.+.||.+|+..|+-+|.+||. |+|..|+... |+- |..||+..|..+-..|+++-
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~I 292 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCL 292 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 457999999999999999999 9999998872 333 48999999999999999864
No 53
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=93.98 E-value=0.014 Score=47.19 Aligned_cols=43 Identities=21% Similarity=0.478 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCC---ChHHHHHHhcCCCCCCChhhHHHHH
Q 014780 289 QRMWTLSEVMKLIDGISQFGVG---KWTDIKRLLFSSSSHRTPIDLRDKW 335 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~KyG~G---kWk~Il~~~f~~f~~RT~VDLKDKW 335 (419)
-..||.+|..+|..++.+|..+ +|..|....+ +||..+++..+
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp----GKT~eEVk~hY 65 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK----GRTPEEVKKHY 65 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC----SSCHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC----CCCHHHHHHHH
Confidence 4579999999999999999976 9999997654 89999998665
No 54
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=92.99 E-value=0.095 Score=43.01 Aligned_cols=50 Identities=14% Similarity=0.125 Sum_probs=40.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 014780 286 RKNQRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 340 (419)
Q Consensus 286 RK~rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 340 (419)
|+....||++|.+.+.+++..||. +|..|... +..||..+|-.=|-...|
T Consensus 40 r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~----l~~Kt~~~cV~~YY~~Kk 89 (94)
T 4a69_C 40 RQVMNMWSEQEKETFREKFMQHPK-NFGLIASF----LERKTVAECVLYYYLTKK 89 (94)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHSTT-CHHHHHHT----CTTCCHHHHHHHHHHHSC
T ss_pred cCCCCCCCHHHHHHHHHHHHHcCC-CHHHHHHH----cCCCCHHHHHHHHhcccc
Confidence 456789999999999999999998 89999543 469999999866544433
No 55
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.93 E-value=0.34 Score=46.69 Aligned_cols=53 Identities=15% Similarity=0.098 Sum_probs=45.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcC--CCChHHHHHHhcCCCCCCChhhHHHHHHHhhhcc
Q 014780 288 NQRMWTLSEVMKLIDGISQFG--VGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 342 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG--~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas 342 (419)
+++.||..|+..|++++.+|| .++|..|..+.. |..+...+|+.=+..|+..+
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~--L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADGT--LPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTS--SCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc--cccCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999 589999998853 78999999998888777544
No 56
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=86.51 E-value=2 Score=36.16 Aligned_cols=53 Identities=17% Similarity=0.397 Sum_probs=45.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCC--CChHHHHHHhcCCCCCCChhhHHHHHHHhhhcc
Q 014780 286 RKNQRMWTLSEVMKLIDGISQFGV--GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 342 (419)
Q Consensus 286 RK~rr~WT~EEveaLv~GV~KyG~--GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas 342 (419)
-.+-.-||.||+..++...++-|. -.|+.|.+.. .+|++-++++|++.|++.-
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L----~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQL----GNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHH----SSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHH----ccCCHHHHHHHHHHHHHHH
Confidence 346778999999999999999985 4799988776 4899999999999999854
No 57
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=79.44 E-value=2.4 Score=40.75 Aligned_cols=29 Identities=21% Similarity=0.242 Sum_probs=24.6
Q ss_pred CChHHHHHHhcCCCCCCChhhHHHHHHHhhhcc
Q 014780 310 GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRAS 342 (419)
Q Consensus 310 GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKas 342 (419)
+.|+.|.+.+ .+||.+..|||||.+++..
T Consensus 172 ~~fk~ia~~~----P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 172 EFFKHFAEEH----AAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp THHHHHHHHT----TTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHC----CCCChhhHHHHHHHHHhhc
Confidence 3799999876 4999999999999998744
No 58
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=78.76 E-value=0.49 Score=37.97 Aligned_cols=49 Identities=10% Similarity=0.266 Sum_probs=41.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCC--CChHHHHHHhcCCCCCCChhhHHHHHHHhhhc
Q 014780 288 NQRMWTLSEVMKLIDGISQFGV--GKWTDIKRLLFSSSSHRTPIDLRDKWRNLLRA 341 (419)
Q Consensus 288 ~rr~WT~EEveaLv~GV~KyG~--GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlKa 341 (419)
.-..||.||+..++...++-|. -.|+.|... + +||+-++++|++.|++.
T Consensus 13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~----L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAK----L-DKNPNQVSERFQQLMKL 63 (70)
Confidence 4567999999999999999986 357777643 4 79999999999999975
No 59
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=56.54 E-value=5.7 Score=26.49 Aligned_cols=11 Identities=36% Similarity=0.002 Sum_probs=8.4
Q ss_pred ccccCCCCCCC
Q 014780 257 LGFESDDDIFS 267 (419)
Q Consensus 257 ~~~EwDde~d~ 267 (419)
++-||||++|+
T Consensus 10 rkrewdddddp 20 (28)
T 3ukx_C 10 RKREWDDDDDP 20 (28)
T ss_dssp CCCCCCCSSSC
T ss_pred hhcccccCCCc
Confidence 67899997654
No 60
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=55.97 E-value=6.3 Score=26.30 Aligned_cols=16 Identities=38% Similarity=0.407 Sum_probs=8.8
Q ss_pred cccCCCCCCCCcccccCCCC
Q 014780 245 LRGGRLKKRSPILGFESDDD 264 (419)
Q Consensus 245 ~R~~rm~kN~s~~~~EwDde 264 (419)
.|+.||++ +.+|||.+
T Consensus 2 srrrrprk----rplewded 17 (28)
T 3ukw_C 2 SRRRRPRK----RPLEWDED 17 (28)
T ss_dssp -----CCC----CCCCCCGG
T ss_pred cccccccc----CCcccccc
Confidence 35667777 78999874
No 61
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=54.13 E-value=12 Score=36.61 Aligned_cols=48 Identities=15% Similarity=0.255 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhhh
Q 014780 289 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLLR 340 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLlK 340 (419)
--.||..+-.+++.|+.+||...|..|..... +.|..+++.=...+.+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~----~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVE----GKTPEEVIEYNAVFWE 157 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSST----TCCHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhc----CCCHHHHHHHHHHHHH
Confidence 44699999999999999999999999997764 7999999877666664
No 62
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=45.95 E-value=4.3 Score=42.21 Aligned_cols=46 Identities=13% Similarity=0.258 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCChHHHHHHhcCCCCCCChhhHHHHHHHhh
Q 014780 289 QRMWTLSEVMKLIDGISQFGVGKWTDIKRLLFSSSSHRTPIDLRDKWRNLL 339 (419)
Q Consensus 289 rr~WT~EEveaLv~GV~KyG~GkWk~Il~~~f~~f~~RT~VDLKDKWRNLl 339 (419)
...||.+|...+.+|+.+||. +|..|.+. +.+||.-+|-.-|....
T Consensus 189 ~d~WT~eE~~lFe~al~~yGK-dF~~I~~~----lp~Ksv~e~V~yYY~WK 234 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGK-TFHRIQQM----LPDKSIASLVKFYYSWK 234 (482)
T ss_dssp ---------------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCc-cHHHHHHH----cCCCCHHHHHHHhcccc
Confidence 358999999999999999998 89999854 35888888765544333
No 63
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=35.10 E-value=8.3 Score=30.20 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=17.0
Q ss_pred ccchhhhcccchhhhhhcccCC
Q 014780 183 LGTKVKRLRKPTKRYIEESSDL 204 (419)
Q Consensus 183 ~~~~~kR~rKptkryieE~S~~ 204 (419)
.+....-||.+.+|||||+-+.
T Consensus 48 rgtktahirealrryieeigen 69 (70)
T 2q2k_A 48 RGTKTAHIREALRRYIEEIGEN 69 (70)
T ss_dssp TTCHHHHHHHHHHHHHHHCC--
T ss_pred CccchHHHHHHHHHHHHHhccC
Confidence 3467788999999999998764
No 64
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=20.20 E-value=33 Score=24.77 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=11.9
Q ss_pred CCCCCCHHHHHHHH
Q 014780 288 NQRMWTLSEVMKLI 301 (419)
Q Consensus 288 ~rr~WT~EEveaLv 301 (419)
+.|+||.||.++++
T Consensus 19 RNrpltDEeLD~mL 32 (39)
T 3lqv_P 19 RNRPLSDEELDAMF 32 (39)
T ss_dssp TTCCCCHHHHHHTC
T ss_pred hcCCCCHHHHHHhC
Confidence 46799999999875
Done!