Query 014781
Match_columns 419
No_of_seqs 260 out of 2127
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:27:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014781.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014781hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0051 RNA polymerase I termi 100.0 1.6E-43 3.5E-48 369.1 22.8 285 135-419 305-607 (607)
2 KOG0049 Transcription factor, 99.9 7E-27 1.5E-31 242.2 17.7 246 115-381 107-408 (939)
3 KOG0049 Transcription factor, 99.9 1.9E-26 4.2E-31 238.9 14.1 202 136-382 251-464 (939)
4 PLN03212 Transcription repress 99.9 9.5E-24 2.1E-28 200.3 9.5 112 190-325 10-124 (249)
5 PLN03091 hypothetical protein; 99.9 5.3E-22 1.1E-26 201.0 11.0 99 209-325 12-113 (459)
6 PLN03212 Transcription repress 99.8 4.5E-21 9.7E-26 182.2 9.6 101 257-381 21-125 (249)
7 KOG0048 Transcription factor, 99.8 7.6E-21 1.6E-25 183.2 10.1 98 211-326 9-109 (238)
8 PLN03091 hypothetical protein; 99.8 1E-19 2.2E-24 184.4 10.0 101 257-381 10-114 (459)
9 KOG0048 Transcription factor, 99.8 3.7E-19 8.1E-24 171.5 9.1 100 259-382 7-111 (238)
10 COG5147 REB1 Myb superfamily p 99.7 5.8E-18 1.3E-22 176.6 5.8 253 139-406 219-478 (512)
11 PF13921 Myb_DNA-bind_6: Myb-l 99.6 6.6E-16 1.4E-20 117.5 7.5 59 214-272 1-60 (60)
12 COG5147 REB1 Myb superfamily p 99.5 2.2E-15 4.8E-20 157.4 4.3 101 133-255 15-117 (512)
13 KOG0051 RNA polymerase I termi 99.5 1.3E-13 2.7E-18 145.6 14.6 177 137-349 383-592 (607)
14 PF13921 Myb_DNA-bind_6: Myb-l 99.4 3.6E-13 7.8E-18 102.4 6.7 60 264-342 1-60 (60)
15 KOG0050 mRNA splicing protein 99.3 2.4E-12 5.1E-17 132.3 6.7 100 135-256 4-104 (617)
16 KOG0050 mRNA splicing protein 99.2 1.2E-11 2.7E-16 127.2 6.1 96 210-324 6-103 (617)
17 PF00249 Myb_DNA-binding: Myb- 99.2 2.6E-11 5.6E-16 88.4 5.4 45 211-255 1-48 (48)
18 PF00249 Myb_DNA-binding: Myb- 99.1 6.3E-11 1.4E-15 86.4 5.5 47 261-324 1-48 (48)
19 smart00717 SANT SANT SWI3, AD 98.9 3.6E-09 7.8E-14 75.4 5.7 46 211-256 1-48 (49)
20 smart00717 SANT SANT SWI3, AD 98.7 2E-08 4.3E-13 71.5 5.6 47 261-324 1-47 (49)
21 cd00167 SANT 'SWI3, ADA2, N-Co 98.7 2E-08 4.3E-13 70.4 5.3 42 213-254 1-44 (45)
22 cd00167 SANT 'SWI3, ADA2, N-Co 98.6 6.4E-08 1.4E-12 67.8 5.4 45 263-324 1-45 (45)
23 TIGR01557 myb_SHAQKYF myb-like 97.2 0.0007 1.5E-08 51.4 5.3 45 211-255 3-54 (57)
24 TIGR02894 DNA_bind_RsfA transc 97.1 0.00047 1E-08 62.5 3.4 47 210-256 3-56 (161)
25 PF13837 Myb_DNA-bind_4: Myb/S 96.8 0.0016 3.5E-08 52.8 4.5 59 262-324 2-64 (90)
26 KOG0457 Histone acetyltransfer 96.7 0.0022 4.7E-08 66.2 5.6 50 259-325 70-119 (438)
27 PF13837 Myb_DNA-bind_4: Myb/S 96.7 0.0013 2.9E-08 53.3 2.9 44 212-255 2-64 (90)
28 TIGR01557 myb_SHAQKYF myb-like 96.6 0.0061 1.3E-07 46.3 5.7 47 261-324 3-54 (57)
29 KOG0457 Histone acetyltransfer 96.6 0.003 6.6E-08 65.2 5.3 47 210-256 71-119 (438)
30 COG5259 RSC8 RSC chromatin rem 96.6 0.0023 5E-08 66.4 4.4 45 210-254 278-323 (531)
31 KOG1279 Chromatin remodeling f 96.4 0.0034 7.4E-08 66.8 4.9 45 210-254 252-297 (506)
32 PF13325 MCRS_N: N-terminal re 96.3 0.013 2.8E-07 55.3 7.3 115 263-399 1-158 (199)
33 KOG1279 Chromatin remodeling f 95.8 0.011 2.4E-07 63.0 5.0 47 259-323 251-297 (506)
34 COG5259 RSC8 RSC chromatin rem 95.7 0.01 2.2E-07 61.8 4.2 46 260-323 278-323 (531)
35 PRK13923 putative spore coat p 95.6 0.0088 1.9E-07 55.0 2.8 47 210-256 4-57 (170)
36 TIGR02894 DNA_bind_RsfA transc 95.6 0.014 3E-07 53.1 4.0 54 260-325 3-56 (161)
37 PF13325 MCRS_N: N-terminal re 94.7 0.16 3.5E-06 48.0 8.4 95 213-323 1-125 (199)
38 PF13873 Myb_DNA-bind_5: Myb/S 94.7 0.039 8.4E-07 43.8 3.7 45 211-255 2-69 (78)
39 PF08914 Myb_DNA-bind_2: Rap1 94.6 0.058 1.3E-06 42.0 4.5 55 140-208 4-59 (65)
40 PF13873 Myb_DNA-bind_5: Myb/S 94.6 0.15 3.3E-06 40.3 6.9 58 138-206 2-69 (78)
41 PF08914 Myb_DNA-bind_2: Rap1 93.1 0.16 3.5E-06 39.5 4.4 55 261-325 2-58 (65)
42 PRK13923 putative spore coat p 91.8 0.3 6.5E-06 45.1 5.1 54 136-206 3-56 (170)
43 COG5114 Histone acetyltransfer 90.7 0.25 5.3E-06 49.6 3.7 47 210-256 62-110 (432)
44 COG5114 Histone acetyltransfer 90.3 0.29 6.4E-06 49.0 3.8 47 261-324 63-109 (432)
45 PLN03142 Probable chromatin-re 90.1 0.55 1.2E-05 54.6 6.3 144 212-382 825-987 (1033)
46 KOG4282 Transcription factor G 87.4 0.94 2E-05 46.1 5.3 57 261-325 54-114 (345)
47 KOG4282 Transcription factor G 87.3 0.85 1.8E-05 46.4 4.9 46 211-256 54-114 (345)
48 PF13404 HTH_AsnC-type: AsnC-t 86.1 1.5 3.3E-05 31.0 4.2 38 217-254 3-41 (42)
49 PLN03142 Probable chromatin-re 82.5 8.3 0.00018 45.1 10.5 164 136-324 803-984 (1033)
50 COG5118 BDP1 Transcription ini 82.4 1.8 3.9E-05 44.5 4.5 44 262-323 366-409 (507)
51 PF09111 SLIDE: SLIDE; InterP 81.8 2.4 5.2E-05 36.9 4.5 47 209-255 47-110 (118)
52 KOG1194 Predicted DNA-binding 81.8 5.8 0.00013 41.8 8.0 97 140-255 132-232 (534)
53 PF08281 Sigma70_r4_2: Sigma-7 80.2 2.7 5.8E-05 30.5 3.8 39 216-254 12-50 (54)
54 PF12776 Myb_DNA-bind_3: Myb/S 79.8 2.7 5.9E-05 34.1 4.1 43 213-255 1-62 (96)
55 PF12776 Myb_DNA-bind_3: Myb/S 79.3 3.1 6.7E-05 33.8 4.2 56 263-324 1-62 (96)
56 PF09111 SLIDE: SLIDE; InterP 78.5 2.2 4.8E-05 37.1 3.3 53 328-382 46-113 (118)
57 COG5118 BDP1 Transcription ini 74.8 4.1 8.8E-05 42.0 4.4 70 210-279 364-442 (507)
58 PRK11179 DNA-binding transcrip 72.7 5.4 0.00012 35.7 4.4 41 217-257 9-50 (153)
59 PRK11169 leucine-responsive tr 64.2 8.2 0.00018 35.0 3.7 43 216-258 13-56 (164)
60 KOG1194 Predicted DNA-binding 64.1 11 0.00025 39.7 5.0 42 140-204 189-230 (534)
61 PF09197 Rap1-DNA-bind: Rap1, 64.0 28 0.00061 29.8 6.6 68 140-207 1-76 (105)
62 smart00595 MADF subfamily of S 62.9 5.8 0.00013 31.8 2.2 24 232-255 29-52 (89)
63 PF04545 Sigma70_r4: Sigma-70, 61.1 15 0.00032 26.3 3.9 39 217-255 7-45 (50)
64 PF07750 GcrA: GcrA cell cycle 61.0 11 0.00025 34.5 4.0 42 213-255 2-44 (162)
65 PF11626 Rap1_C: TRF2-interact 60.5 8.4 0.00018 31.4 2.8 22 209-230 45-74 (87)
66 smart00595 MADF subfamily of S 59.6 7.8 0.00017 31.0 2.5 24 300-324 29-52 (89)
67 PF13404 HTH_AsnC-type: AsnC-t 56.7 25 0.00054 24.8 4.3 38 267-322 3-40 (42)
68 KOG2656 DNA methyltransferase 53.9 8.9 0.00019 39.8 2.2 44 212-255 131-181 (445)
69 PF04504 DUF573: Protein of un 52.3 1.2E+02 0.0026 25.3 8.5 79 139-228 5-94 (98)
70 KOG4167 Predicted DNA-binding 50.9 22 0.00048 39.8 4.8 47 209-255 617-664 (907)
71 cd07355 HN_L-delphilin-R2_like 49.7 35 0.00076 27.6 4.5 61 141-203 16-77 (80)
72 PRK11179 DNA-binding transcrip 47.8 32 0.0007 30.6 4.7 44 267-328 9-52 (153)
73 PF13936 HTH_38: Helix-turn-he 45.5 22 0.00048 25.1 2.6 38 212-250 3-40 (44)
74 KOG2656 DNA methyltransferase 45.5 32 0.00069 35.9 4.6 53 319-382 123-184 (445)
75 PF02954 HTH_8: Bacterial regu 45.1 54 0.0012 22.7 4.6 36 218-253 6-41 (42)
76 smart00344 HTH_ASNC helix_turn 43.0 46 0.00099 27.4 4.6 41 217-257 3-44 (108)
77 TIGR02985 Sig70_bacteroi1 RNA 42.9 35 0.00075 29.5 4.1 38 218-255 117-154 (161)
78 PRK11169 leucine-responsive tr 42.7 38 0.00083 30.6 4.4 45 266-328 13-57 (164)
79 cd08319 Death_RAIDD Death doma 41.1 34 0.00075 27.8 3.4 30 219-248 2-31 (83)
80 PF09420 Nop16: Ribosome bioge 40.6 43 0.00094 30.5 4.4 45 210-254 113-162 (164)
81 PF10545 MADF_DNA_bdg: Alcohol 40.5 20 0.00044 27.8 2.0 24 232-255 28-53 (85)
82 TIGR00673 cynS cyanate hydrata 37.7 1.3E+02 0.0028 27.4 6.9 51 220-277 11-61 (150)
83 COG1522 Lrp Transcriptional re 36.7 48 0.0011 28.9 4.0 41 217-257 8-49 (154)
84 PF07638 Sigma70_ECF: ECF sigm 36.2 51 0.0011 30.2 4.2 27 228-254 149-175 (185)
85 KOG4167 Predicted DNA-binding 35.6 59 0.0013 36.6 5.1 41 140-203 621-661 (907)
86 PF04504 DUF573: Protein of un 35.0 49 0.0011 27.7 3.6 51 332-382 5-65 (98)
87 cd08803 Death_ank3 Death domai 34.5 54 0.0012 26.7 3.6 30 219-248 4-33 (84)
88 PF10545 MADF_DNA_bdg: Alcohol 34.4 31 0.00068 26.7 2.2 25 300-324 28-53 (85)
89 PF07750 GcrA: GcrA cell cycle 33.3 53 0.0012 30.1 3.8 41 263-322 2-42 (162)
90 cd07178 terB_like_YebE telluri 31.2 3E+02 0.0065 22.7 7.8 79 138-230 13-94 (95)
91 PF01388 ARID: ARID/BRIGHT DNA 30.8 79 0.0017 25.4 4.1 25 232-256 59-89 (92)
92 cd07176 terB tellurite resista 30.7 1.7E+02 0.0037 23.7 6.2 91 138-230 16-110 (111)
93 PF11626 Rap1_C: TRF2-interact 30.2 55 0.0012 26.6 3.0 26 136-161 45-74 (87)
94 PF11198 DUF2857: Protein of u 28.5 2.5E+02 0.0055 26.0 7.5 60 217-277 74-136 (180)
95 PRK01905 DNA-binding protein F 28.4 2.2E+02 0.0049 22.4 6.2 39 216-254 36-74 (77)
96 PRK02866 cyanate hydratase; Va 28.3 1.8E+02 0.0039 26.4 6.2 51 220-277 8-58 (147)
97 KOG4468 Polycomb-group transcr 28.2 62 0.0014 35.6 3.7 51 206-256 83-144 (782)
98 COG2963 Transposase and inacti 27.9 1.2E+02 0.0027 25.3 5.0 64 211-274 5-76 (116)
99 TIGR02531 yecD_yerC TrpR-relat 27.8 1.5E+02 0.0033 24.4 5.2 69 182-254 4-73 (88)
100 cd08317 Death_ank Death domain 26.9 57 0.0012 26.2 2.5 29 219-247 4-32 (84)
101 cd00569 HTH_Hin_like Helix-tur 26.4 1.5E+02 0.0032 17.6 5.2 36 212-248 4-39 (42)
102 PF01726 LexA_DNA_bind: LexA D 26.4 1.9E+02 0.0041 22.3 5.2 44 147-207 9-52 (65)
103 smart00501 BRIGHT BRIGHT, ARID 26.3 75 0.0016 25.8 3.2 26 231-256 54-85 (93)
104 cd06171 Sigma70_r4 Sigma70, re 26.2 1.2E+02 0.0027 20.4 4.0 40 214-254 11-50 (55)
105 TIGR02957 SigX4 RNA polymerase 24.6 2.9E+02 0.0062 27.0 7.6 52 228-279 122-176 (281)
106 PRK04217 hypothetical protein; 24.3 1.2E+02 0.0027 26.0 4.2 44 211-255 40-83 (110)
107 TIGR02937 sigma70-ECF RNA poly 24.1 99 0.0021 25.8 3.7 41 214-255 111-151 (158)
108 PF06163 DUF977: Bacterial pro 24.1 3.5E+02 0.0075 24.0 7.0 63 139-221 3-72 (127)
109 PRK09413 IS2 repressor TnpA; R 24.0 4.5E+02 0.0098 22.3 9.4 47 208-255 7-53 (121)
110 PRK09641 RNA polymerase sigma 23.3 1.1E+02 0.0024 27.3 4.0 32 224-255 146-177 (187)
111 cd08804 Death_ank2 Death domai 23.0 96 0.0021 25.1 3.2 31 219-249 4-34 (84)
112 PF01527 HTH_Tnp_1: Transposas 22.9 1.2E+02 0.0027 23.0 3.7 45 210-255 3-47 (76)
113 PF13384 HTH_23: Homeodomain-l 22.3 1.2E+02 0.0025 21.3 3.2 30 219-249 7-36 (50)
114 PRK09652 RNA polymerase sigma 22.2 1.2E+02 0.0025 26.7 3.9 31 225-255 139-169 (182)
115 PRK11924 RNA polymerase sigma 21.8 1.2E+02 0.0027 26.5 4.0 27 229-255 140-166 (179)
116 cd08318 Death_NMPP84 Death dom 21.5 1.1E+02 0.0024 24.7 3.3 26 222-247 10-35 (86)
117 PRK09643 RNA polymerase sigma 21.5 1.3E+02 0.0029 27.4 4.2 27 229-255 149-175 (192)
118 PRK09635 sigI RNA polymerase s 20.8 2.4E+02 0.0052 28.0 6.2 51 228-278 132-185 (290)
119 cd07347 harmonin_N_like N-term 20.8 2E+02 0.0043 23.3 4.5 51 142-194 17-68 (78)
120 cd08805 Death_ank1 Death domai 20.6 1.3E+02 0.0027 24.6 3.4 29 219-247 4-32 (84)
121 PRK09645 RNA polymerase sigma 20.5 1.5E+02 0.0032 26.2 4.3 28 228-255 132-159 (173)
122 PRK00430 fis global DNA-bindin 20.3 2E+02 0.0043 23.9 4.6 37 218-254 56-92 (95)
123 smart00351 PAX Paired Box doma 20.0 5.7E+02 0.012 22.0 8.4 66 211-277 15-89 (125)
No 1
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=100.00 E-value=1.6e-43 Score=369.13 Aligned_cols=285 Identities=29% Similarity=0.494 Sum_probs=261.5
Q ss_pred CccCCCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccCc-chhhhhHHHHHhhCCCCCHHHHHHHHHHhhCC--CCC
Q 014781 135 FIRGKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSY-PEIKHCWKEIGAALPWRPCESIYYRAHILFER--DEN 211 (419)
Q Consensus 135 ~~k~g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~-~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~~~--~~k 211 (419)
-++.+.|+++|+.+|.++|..|+..+||+.+++++.++++.+ ..++.||..|...||.|+..++|.+.+|.+++ +++
T Consensus 305 e~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~r 384 (607)
T KOG0051|consen 305 EINLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENKR 384 (607)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCcccccc
Confidence 477899999999999999999999999999999999998876 88999999999999999999999999888876 389
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcccCC--CCCCCCCHHHHHHHHHHHHHHHHhhhhH---
Q 014781 212 RKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKLPN--QKKGQWSQEEYQKLFALVNMDLRMKASE--- 286 (419)
Q Consensus 212 g~WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l~~~--~~kg~WT~EED~~L~~lV~~~l~~~~~~--- 286 (419)
|.||+||++.|..+|.+||++|..||..|||+|.+|+++|+++..+. .++|+||.||++.|+.+|+++++....+
T Consensus 385 g~wt~ee~eeL~~l~~~~g~~W~~Ig~~lgr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~ 464 (607)
T KOG0051|consen 385 GKWTPEEEEELKKLVVEHGNDWKEIGKALGRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQPQAS 464 (607)
T ss_pred CCCCcchHHHHHHHHHHhcccHHHHHHHHccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999998766 4899999999999999999988744332
Q ss_pred -----HHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcCCCCccCCCCCh-hchHHHHHHHHcCCCCCCCCCCcc
Q 014781 287 -----EKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSPMVAEGKWAD-TDDFHLVNALSGLDACCMDDVDWD 360 (419)
Q Consensus 287 -----e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~~~~v~kg~Wt~-eED~~Ll~~i~~~g~~~e~~i~W~ 360 (419)
...+..+++.++|+|+.||+.+++|++.|||.+|+.++..|+++.+.|.. .+...||+.|..++..+++.|||.
T Consensus 465 n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~~~~~~~v~l~ErL~dl~~~e~~~IDW~ 544 (607)
T KOG0051|consen 465 NTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQESKGSDMVWLLERLSDLDLTEESPIDWK 544 (607)
T ss_pred ccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcccccccchhHHHHHHHHhcccccCCccCHH
Confidence 12234445678999999999999999999999999999999999999998 578999999999999999999999
Q ss_pred cc---cCCCC-HHHHHHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccchHHHHhhcCCCCCCC
Q 014781 361 NL---LEHRS-GTFCRKRWNQMVKHLGTDGNKSFPEQVEILSTRYCPDVLEARLAYNSKGTTV 419 (419)
Q Consensus 361 ~I---~~~Rs-~~qcr~RW~~l~k~v~~~~~~~f~eiv~~L~~~~~p~l~~~~~~~~~~~~~~ 419 (419)
.| ++|++ +.+|+.+|.+|+..|++++..+|+||+++|++.|+|.+-+....|.+-|+.|
T Consensus 545 ~l~~~~~g~~~~~e~r~q~~~lk~~I~~~k~kt~~E~~~~l~e~~~pl~~e~~s~fsn~~~~~ 607 (607)
T KOG0051|consen 545 SLAEYAPGESTGEELRLQFERLKKKIPGWKKKTFSEIVDILIEDLLPLPTEDGSPFSNDSYDV 607 (607)
T ss_pred HHHHhCCCCCcHHHHHHHHHhHhhccCCCCCccHHHHHHHHHHHhccCcccccCCcccccCCC
Confidence 99 45776 9999999999999999999999999999999999999988889999888765
No 2
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.95 E-value=7e-27 Score=242.17 Aligned_cols=246 Identities=22% Similarity=0.408 Sum_probs=200.8
Q ss_pred ccCCCc-cccCCCcCCCC--------CCCC-ccCCCCCHHHHHHHHHHHHHHHHHcCCCcchh-hhhhhcc---------
Q 014781 115 FSDHVQ-VVPSSEAKSDK--------NDGF-IRGKRFSLEEDEMIKKAVINYIEAHRLGEDGL-NMVLHCR--------- 174 (419)
Q Consensus 115 ~~d~~~-~~~~~~~~~~~--------~~~~-~k~g~wT~eEd~~L~~aV~~y~~~~~l~~e~l-~~l~~~~--------- 174 (419)
|.|++. +-|+.++|..+ .+.+ ....+||.-|.+.|+.-|..-.-.|.+...-+ ..+++.+
T Consensus 107 Fkdd~~G~~pP~NED~rekchq~~k~fd~~m~~~~kWt~~eKk~lr~sVk~~lL~h~~qp~~~~~~~~~~~~~~~Ss~L~ 186 (939)
T KOG0049|consen 107 FKDDNNGMYPPMNEDAREKCHQVLKWFDPMMKEEKKWTPSEKKTLRTSVKNALLAHQVQPWCSRRDIVARDADITSSNLD 186 (939)
T ss_pred cccccCCCCCCCchhHHHHHhccccccchhhhhcccCChHHHHHHHHHHHHHHHHHHhchhhhhhhhhhhcccccccchh
Confidence 666666 77888888777 2333 33568999999999999887776665531111 1111111
Q ss_pred -------------------Ccch--------hhhhHHHHHhh-C-CCCCHHHHHHHHHHhhCC-CCCCCCCHHHHHHHHH
Q 014781 175 -------------------SYPE--------IKHCWKEIGAA-L-PWRPCESIYYRAHILFER-DENRKWTPEELELVRK 224 (419)
Q Consensus 175 -------------------~~~e--------~~~~W~~IA~~-L-P~R~~~s~y~r~~~~~~~-~~kg~WT~EEDe~L~~ 224 (419)
..++ ...+|..|+.. | ..|++.+|...|++.++| ..+-.|++|||+.|..
T Consensus 187 R~~~E~~l~~l~~~ia~~~~~~ee~~l~~~~d~~DW~~ISn~dfEgsrS~~~~~~~W~n~l~P~~nk~~WS~EE~E~L~A 266 (939)
T KOG0049|consen 187 RRQWEMELEDLMRKIAYVREKSEEEVLTASADYVDWTAISNFDFEGSRSEWAVKSKWYNELNPKWNKEHWSNEEVEKLKA 266 (939)
T ss_pred hHHHHHHHHHHHHHHHHhhhcchhhhhhccccccCHHHhccccccccCCHHHHHHHHhhhcCCccchhccChHHHHHHHH
Confidence 0001 12579999964 3 458999999999999998 5899999999999999
Q ss_pred HHHHhCC-CHhhHHhhhC--CChHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCch
Q 014781 225 FYEKHGS-DWKTMADTLG--KHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISW 301 (419)
Q Consensus 225 lv~~~G~-~W~~IA~~LG--Rs~~qcr~Rwr~~l~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W 301 (419)
+...+|. +|..||..|| ||..||..+|+..+. .+....||+|||.+|+.+|.++ .+...|+|
T Consensus 267 iA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~-~L~ekeWsEEed~kL~alV~~~--------------~~nShI~w 331 (939)
T KOG0049|consen 267 LAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVS-QLSEKEWSEEEDTKLIALVKIT--------------SINSHIQW 331 (939)
T ss_pred HHhccccccHHHHHHHhCCCcchHHHHHHHHHHHH-HHHhhhcchhhhHHHHHHHHHh--------------hccCccch
Confidence 9999996 9999999997 899999999998864 3456799999999999999842 23456999
Q ss_pred hHhhhhcCCCCHHHHHHHHHHhcCCCCccCCCCChhchHHHHHHHHcCCCCCCCCCCcccc---cCCCCHHHHHHHHHHH
Q 014781 302 EAISEKLSTRTNAICCMKWYDQLTSPMVAEGKWADTDDFHLVNALSGLDACCMDDVDWDNL---LEHRSGTFCRKRWNQM 378 (419)
Q Consensus 302 ~~IS~~m~~RS~~QCr~RW~~~L~~~~v~kg~Wt~eED~~Ll~~i~~~g~~~e~~i~W~~I---~~~Rs~~qcr~RW~~l 378 (419)
.+|-..|++|+..|...||+..| +|.+++|+|+.+||.+|+.+|.+||. .+|..| +|||++.|||.||.+.
T Consensus 332 ~kVV~Ympgr~~~qLI~R~~~~L-dPsikhg~wt~~ED~~L~~AV~~Yg~-----kdw~k~R~~vPnRSdsQcR~RY~nv 405 (939)
T KOG0049|consen 332 DKVVQYMPGRTRQQLITRFSHTL-DPSVKHGRWTDQEDVLLVCAVSRYGA-----KDWAKVRQAVPNRSDSQCRERYTNV 405 (939)
T ss_pred HHHHHhcCCcchhhhhhhheecc-CccccCCCCCCHHHHHHHHHHHHhCc-----cchhhHHHhcCCccHHHHHHHHHHH
Confidence 99999999999999999999999 79999999999999999999999997 899876 8999999999999998
Q ss_pred Hhh
Q 014781 379 VKH 381 (419)
Q Consensus 379 ~k~ 381 (419)
+.+
T Consensus 406 L~~ 408 (939)
T KOG0049|consen 406 LNR 408 (939)
T ss_pred HHH
Confidence 753
No 3
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.94 E-value=1.9e-26 Score=238.94 Aligned_cols=202 Identities=19% Similarity=0.335 Sum_probs=178.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccCcchhhhhHHHHHhhCCC-CCHHHHHHHHHHhhCCCCCCCC
Q 014781 136 IRGKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPW-RPCESIYYRAHILFERDENRKW 214 (419)
Q Consensus 136 ~k~g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP~-R~~~s~y~r~~~~~~~~~kg~W 214 (419)
+++--||+||++.|..... .+++ ..|..||..|.. |+.+||+.+|+..+..-....|
T Consensus 251 ~nk~~WS~EE~E~L~AiA~----A~~~------------------~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeW 308 (939)
T KOG0049|consen 251 WNKEHWSNEEVEKLKALAE----APKF------------------VSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEW 308 (939)
T ss_pred cchhccChHHHHHHHHHHh----cccc------------------ccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhc
Confidence 4556799999999987643 2222 369999999975 9999999999877765455889
Q ss_pred CHHHHHHHHHHHHHhC--C--CHhhHHhhh-CCChHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHh
Q 014781 215 TPEELELVRKFYEKHG--S--DWKTMADTL-GKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDLRMKASEEKR 289 (419)
Q Consensus 215 T~EEDe~L~~lv~~~G--~--~W~~IA~~L-GRs~~qcr~Rwr~~l~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~ 289 (419)
|+|||..|+.||.... . +|..|-.+| ||+..|...||...|+|++++|.||.+||.+|+.+|.
T Consensus 309 sEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~------------ 376 (939)
T KOG0049|consen 309 SEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVS------------ 376 (939)
T ss_pred chhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHH------------
Confidence 9999999999999884 3 999999999 9999999999999999999999999999999999999
Q ss_pred hhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcCCCCccCCCCChhchHHHHHHHHcCCCCCCCCCCcccc---cCCC
Q 014781 290 TKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSPMVAEGKWADTDDFHLVNALSGLDACCMDDVDWDNL---LEHR 366 (419)
Q Consensus 290 ~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~~~~v~kg~Wt~eED~~Ll~~i~~~g~~~e~~i~W~~I---~~~R 366 (419)
.||. ..|.+|-..+|+||..|||.||.+.|. ...+.+.|+..||.+||.+|..||+ ..|.++ ++++
T Consensus 377 -~Yg~----kdw~k~R~~vPnRSdsQcR~RY~nvL~-~s~K~~rW~l~edeqL~~~V~~YG~-----g~WakcA~~Lp~~ 445 (939)
T KOG0049|consen 377 -RYGA----KDWAKVRQAVPNRSDSQCRERYTNVLN-RSAKVERWTLVEDEQLLYAVKVYGK-----GNWAKCAMLLPKK 445 (939)
T ss_pred -HhCc----cchhhHHHhcCCccHHHHHHHHHHHHH-HhhccCceeecchHHHHHHHHHHcc-----chHHHHHHHcccc
Confidence 7775 799999999999999999999999995 7889999999999999999999998 899998 5788
Q ss_pred CH---HHHHHHHHHHHhhh
Q 014781 367 SG---TFCRKRWNQMVKHL 382 (419)
Q Consensus 367 s~---~qcr~RW~~l~k~v 382 (419)
|+ .-||.|+-.++.++
T Consensus 446 t~~q~~rrR~R~~~~k~rl 464 (939)
T KOG0049|consen 446 TSRQLRRRRLRLIAAKLRL 464 (939)
T ss_pred chhHHHHHHHHHHHHHHHH
Confidence 88 56777777776655
No 4
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.90 E-value=9.5e-24 Score=200.34 Aligned_cols=112 Identities=20% Similarity=0.348 Sum_probs=100.1
Q ss_pred CCCCCHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHhCC-CHhhHHhhh--CCChHHHHHHhhhcccCCCCCCCCCH
Q 014781 190 LPWRPCESIYYRAHILFERDENRKWTPEELELVRKFYEKHGS-DWKTMADTL--GKHRFHVKDAWRRIKLPNQKKGQWSQ 266 (419)
Q Consensus 190 LP~R~~~s~y~r~~~~~~~~~kg~WT~EEDe~L~~lv~~~G~-~W~~IA~~L--GRs~~qcr~Rwr~~l~~~~~kg~WT~ 266 (419)
||.|++--|+.- .-++++||+|||+.|+++|.+||. +|..||..+ ||++.||+.||.++|.|.+++++||.
T Consensus 10 ~~~~~~pcc~K~------glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~ 83 (249)
T PLN03212 10 VSKKTTPCCTKM------GMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITS 83 (249)
T ss_pred CCCCCCCCcccC------CCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCCh
Confidence 455555555431 236899999999999999999995 999999988 59999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcC
Q 014781 267 EEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLT 325 (419)
Q Consensus 267 EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~ 325 (419)
|||+.|++++. .+|. .|..||..|++||+.||++||+.+|.
T Consensus 84 EED~lLlel~~-------------~~Gn-----KWs~IAk~LpGRTDnqIKNRWns~Lr 124 (249)
T PLN03212 84 DEEDLILRLHR-------------LLGN-----RWSLIAGRIPGRTDNEIKNYWNTHLR 124 (249)
T ss_pred HHHHHHHHHHH-------------hccc-----cHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 99999999998 7886 89999999999999999999998874
No 5
>PLN03091 hypothetical protein; Provisional
Probab=99.86 E-value=5.3e-22 Score=200.96 Aligned_cols=99 Identities=24% Similarity=0.404 Sum_probs=94.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHhhHHhhh--CCChHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHhhhh
Q 014781 209 DENRKWTPEELELVRKFYEKHGS-DWKTMADTL--GKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDLRMKAS 285 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G~-~W~~IA~~L--GRs~~qcr~Rwr~~l~~~~~kg~WT~EED~~L~~lV~~~l~~~~~ 285 (419)
.++|+||+|||++|+++|.+||. +|..||..+ ||++.||++||.++|+|.+++|+||.|||++|++++.
T Consensus 12 lrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k-------- 83 (459)
T PLN03091 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHA-------- 83 (459)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHH--------
Confidence 47899999999999999999996 899999988 5999999999999999999999999999999999998
Q ss_pred HHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcC
Q 014781 286 EEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLT 325 (419)
Q Consensus 286 ~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~ 325 (419)
.+|. +|..||..|++||+.+|++||+.+|.
T Consensus 84 -----~~Gn-----KWskIAk~LPGRTDnqIKNRWnslLK 113 (459)
T PLN03091 84 -----VLGN-----RWSQIAAQLPGRTDNEIKNLWNSCLK 113 (459)
T ss_pred -----HhCc-----chHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 7896 99999999999999999999998774
No 6
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.84 E-value=4.5e-21 Score=182.18 Aligned_cols=101 Identities=21% Similarity=0.500 Sum_probs=93.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcC-CCCHHHHHHHHHHhcCCCCccCCCCC
Q 014781 257 PNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLS-TRTNAICCMKWYDQLTSPMVAEGKWA 335 (419)
Q Consensus 257 ~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~-~RS~~QCr~RW~~~L~~~~v~kg~Wt 335 (419)
+.+++++||+|||++|+++|+ .||. .+|..||..|+ +||+.|||.||.++| +|.+++++||
T Consensus 21 ~glKRg~WT~EEDe~L~~lV~-------------kyG~----~nW~~IAk~~g~gRT~KQCReRW~N~L-~P~I~kgpWT 82 (249)
T PLN03212 21 MGMKRGPWTVEEDEILVSFIK-------------KEGE----GRWRSLPKRAGLLRCGKSCRLRWMNYL-RPSVKRGGIT 82 (249)
T ss_pred CCCcCCCCCHHHHHHHHHHHH-------------HhCc----ccHHHHHHhhhcCCCcchHHHHHHHhh-chhcccCCCC
Confidence 467899999999999999999 7885 58999999995 999999999999999 5999999999
Q ss_pred hhchHHHHHHHHcCCCCCCCCCCcccc---cCCCCHHHHHHHHHHHHhh
Q 014781 336 DTDDFHLVNALSGLDACCMDDVDWDNL---LEHRSGTFCRKRWNQMVKH 381 (419)
Q Consensus 336 ~eED~~Ll~~i~~~g~~~e~~i~W~~I---~~~Rs~~qcr~RW~~l~k~ 381 (419)
.+||.+|++++..+| ..|..| ++|||+.+|++||+.+++.
T Consensus 83 ~EED~lLlel~~~~G------nKWs~IAk~LpGRTDnqIKNRWns~LrK 125 (249)
T PLN03212 83 SDEEDLILRLHRLLG------NRWSLIAGRIPGRTDNEIKNYWNTHLRK 125 (249)
T ss_pred hHHHHHHHHHHHhcc------ccHHHHHhhcCCCCHHHHHHHHHHHHhH
Confidence 999999999999999 799999 5799999999999987754
No 7
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.84 E-value=7.6e-21 Score=183.24 Aligned_cols=98 Identities=21% Similarity=0.347 Sum_probs=93.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CHhhHHhhh--CCChHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHH
Q 014781 211 NRKWTPEELELVRKFYEKHGS-DWKTMADTL--GKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDLRMKASEE 287 (419)
Q Consensus 211 kg~WT~EEDe~L~~lv~~~G~-~W~~IA~~L--GRs~~qcr~Rwr~~l~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e 287 (419)
+|+||+|||+.|+++|.+||. +|..||+.+ ||+..+||.||.++|.|.+++|.||+|||..|+++..
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~---------- 78 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHA---------- 78 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHH----------
Confidence 699999999999999999997 899999999 5999999999999999999999999999999999998
Q ss_pred HhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcCC
Q 014781 288 KRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTS 326 (419)
Q Consensus 288 ~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~~ 326 (419)
.+|+ .|+.||.+|||||+..+++.|+..|..
T Consensus 79 ---~~GN-----rWs~IA~~LPGRTDNeIKN~Wnt~lkk 109 (238)
T KOG0048|consen 79 ---LLGN-----RWSLIAGRLPGRTDNEVKNHWNTHLKK 109 (238)
T ss_pred ---HHCc-----HHHHHHhhCCCcCHHHHHHHHHHHHHH
Confidence 8996 899999999999999999999998853
No 8
>PLN03091 hypothetical protein; Provisional
Probab=99.80 E-value=1e-19 Score=184.42 Aligned_cols=101 Identities=24% Similarity=0.558 Sum_probs=93.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcC-CCCHHHHHHHHHHhcCCCCccCCCCC
Q 014781 257 PNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLS-TRTNAICCMKWYDQLTSPMVAEGKWA 335 (419)
Q Consensus 257 ~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~-~RS~~QCr~RW~~~L~~~~v~kg~Wt 335 (419)
..+++|.||+|||++|+.+|. .||. .+|..||..|+ +|++.|||.||.++| +|.+++++||
T Consensus 10 qklrKg~WTpEEDe~L~~~V~-------------kyG~----~nWs~IAk~~g~gRT~KQCRERW~NyL-dP~IkKgpWT 71 (459)
T PLN03091 10 QKLRKGLWSPEEDEKLLRHIT-------------KYGH----GCWSSVPKQAGLQRCGKSCRLRWINYL-RPDLKRGTFS 71 (459)
T ss_pred CCCcCCCCCHHHHHHHHHHHH-------------HhCc----CCHHHHhhhhccCcCcchHhHHHHhcc-CCcccCCCCC
Confidence 467899999999999999998 7885 68999999996 999999999999999 6999999999
Q ss_pred hhchHHHHHHHHcCCCCCCCCCCcccc---cCCCCHHHHHHHHHHHHhh
Q 014781 336 DTDDFHLVNALSGLDACCMDDVDWDNL---LEHRSGTFCRKRWNQMVKH 381 (419)
Q Consensus 336 ~eED~~Ll~~i~~~g~~~e~~i~W~~I---~~~Rs~~qcr~RW~~l~k~ 381 (419)
.+||.+||+++..+| ..|..| ++|||+.+|++||+.++++
T Consensus 72 ~EED~lLLeL~k~~G------nKWskIAk~LPGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 72 QQEENLIIELHAVLG------NRWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred HHHHHHHHHHHHHhC------cchHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999 699999 5799999999999997754
No 9
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.78 E-value=3.7e-19 Score=171.48 Aligned_cols=100 Identities=23% Similarity=0.466 Sum_probs=92.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcC-CCCHHHHHHHHHHhcCCCCccCCCCChh
Q 014781 259 QKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLS-TRTNAICCMKWYDQLTSPMVAEGKWADT 337 (419)
Q Consensus 259 ~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~-~RS~~QCr~RW~~~L~~~~v~kg~Wt~e 337 (419)
..+|+||+|||.+|+++|. .||. -+|..||..+| +|+..+||.||.++| +|.+++|.||.+
T Consensus 7 ~~kGpWt~EED~~L~~~V~-------------~~G~----~~W~~i~k~~gl~R~GKSCRlRW~NyL-rP~ikrg~fT~e 68 (238)
T KOG0048|consen 7 LVKGPWTQEEDLTQIRSIK-------------SFGK----HNGTALPKLAGLRRCGKSCRLRWTNYL-RPDLKRGNFSDE 68 (238)
T ss_pred ccCCCCChHHHHHHHHHHH-------------HhCC----CCcchhhhhcCCCccchHHHHHhhccc-CCCccCCCCCHH
Confidence 4579999999999999999 7886 58999999999 999999999999999 599999999999
Q ss_pred chHHHHHHHHcCCCCCCCCCCcccc---cCCCCHHHHHHHHHHHH-hhh
Q 014781 338 DDFHLVNALSGLDACCMDDVDWDNL---LEHRSGTFCRKRWNQMV-KHL 382 (419)
Q Consensus 338 ED~~Ll~~i~~~g~~~e~~i~W~~I---~~~Rs~~qcr~RW~~l~-k~v 382 (419)
||.+||+++..+| ..|+.| +||||++.+++.|+..+ |++
T Consensus 69 Ee~~Ii~lH~~~G------NrWs~IA~~LPGRTDNeIKN~Wnt~lkkkl 111 (238)
T KOG0048|consen 69 EEDLIIKLHALLG------NRWSLIAGRLPGRTDNEVKNHWNTHLKKKL 111 (238)
T ss_pred HHHHHHHHHHHHC------cHHHHHHhhCCCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999 799998 68999999999999854 444
No 10
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.71 E-value=5.8e-18 Score=176.57 Aligned_cols=253 Identities=19% Similarity=0.272 Sum_probs=203.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccCcchhhhhHHHHHhhCCCCCHHHHHHHHHHhhCC-CCCCCCCHH
Q 014781 139 KRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFER-DENRKWTPE 217 (419)
Q Consensus 139 g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~~~-~~kg~WT~E 217 (419)
+.|.+.|..++.+.+..|....+++...++.-+++.. .....||..|...+|.|+..++|.|.++.|++ ...|.||+|
T Consensus 219 k~f~~~~~~~~e~~i~~~~~~~~~sr~q~~~~Iws~~-~~~~~f~~n~~~~l~~R~~ksiy~~~rrky~~f~~~~~wt~e 297 (512)
T COG5147 219 KAFKKGETLALEQEINEYKEKKGLSRKQFCERIWSTD-RDEDKFWPNIYKKLPYRDKKSIYKHLRRKYNIFEQRGKWTKE 297 (512)
T ss_pred cccchhHHHHHHHHHHHHHHHhcccHHHHHhhccccc-cccccccchhhcccccccccchHHHHHHhhhHHhhhccCccc
Confidence 6799999999999999999999999999988877655 66778999999999999999999999999997 689999999
Q ss_pred HHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcccC--CCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCc
Q 014781 218 ELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKLP--NQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGML 295 (419)
Q Consensus 218 EDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l~~--~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~ 295 (419)
|++.|..++..+|..|..|+..+||.+..|++||+.++.+ ...+++||.||+.+|...|.++..... .
T Consensus 298 ~~~eL~~~~~~~~~~w~~ig~~~~rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~e~~~~~~----------~ 367 (512)
T COG5147 298 EEQELAKLVVEHGGSWTEIGKLLGRMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEAQ----------Q 367 (512)
T ss_pred cccccccccccccchhhHhhhhhccCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHHHHHHHHh----------h
Confidence 9999999999999999999999999999999999999876 578889999999999999986543322 2
Q ss_pred CCCCchhHhhhhcCCCCHHHHHHHHHHhcCCCCccCCCCChhchHHHHHHHHcCCCCCCCCCCcccccC---C-CCHHHH
Q 014781 296 RDNISWEAISEKLSTRTNAICCMKWYDQLTSPMVAEGKWADTDDFHLVNALSGLDACCMDDVDWDNLLE---H-RSGTFC 371 (419)
Q Consensus 296 ~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~~~~v~kg~Wt~eED~~Ll~~i~~~g~~~e~~i~W~~I~~---~-Rs~~qc 371 (419)
...+.|..|+.++++|...+|+..+..... ....+...+-..|++.+...+......+.|..++. + +.....
T Consensus 368 ~~~~~~~li~~~~~~~~~~~~~~~~~~~~~----~s~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 443 (512)
T COG5147 368 SSRILWLLIAQNIRNRLQHHCRDKYGVLIS----NSSPFDAGAAIWLIERYSNRKIQNGDLIKWRNSVLDSARRRMRDLK 443 (512)
T ss_pred hhhhhHHHHHHhhhccccCCCCCccccccc----cCChhhhhhchHHHhhhchhhhhccccccccccccccccccccchh
Confidence 234799999999999999999988776552 44567777778899999988888888999998732 2 222333
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHhhccchH
Q 014781 372 RKRWNQMVKHLGTDGNKSFPEQVEILSTRYCPDVL 406 (419)
Q Consensus 372 r~RW~~l~k~v~~~~~~~f~eiv~~L~~~~~p~l~ 406 (419)
-.....++-.+|+....+|..+-.-.+..+.+-+.
T Consensus 444 ~~~~~~~~~~~p~~~~~~~e~~~~~~~~~~~~~~s 478 (512)
T COG5147 444 DLPEYALLLRTPDYNKSSLERIKKSAIDDGKKVLS 478 (512)
T ss_pred hhhhHHhcCCCCCcccccccccCcchhhhcccccc
Confidence 33444455566665555554443333333333333
No 11
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.63 E-value=6.6e-16 Score=117.53 Aligned_cols=59 Identities=39% Similarity=0.799 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHHhCCCHhhHHhhhC-CChHHHHHHhhhcccCCCCCCCCCHHHHHHH
Q 014781 214 WTPEELELVRKFYEKHGSDWKTMADTLG-KHRFHVKDAWRRIKLPNQKKGQWSQEEYQKL 272 (419)
Q Consensus 214 WT~EEDe~L~~lv~~~G~~W~~IA~~LG-Rs~~qcr~Rwr~~l~~~~~kg~WT~EED~~L 272 (419)
||+|||+.|+.+|..||.+|..||..|| ||+.+|+.||+.++.+...+++||++||++|
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 9999999999999999999999999998 9999999999998888999999999999987
No 12
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.55 E-value=2.2e-15 Score=157.38 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=92.1
Q ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccCcchhhhhHHHHHhhCCCCCHHHHHHHHHHhhCC-CCC
Q 014781 133 DGFIRGKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFER-DEN 211 (419)
Q Consensus 133 ~~~~k~g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~~~-~~k 211 (419)
.+.+++|.|+..||..|..+|+.|.. ..|..||..|+.++..+|..||..+++| .++
T Consensus 15 ~~~~k~gsw~~~EDe~l~~~vk~l~~----------------------nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~ 72 (512)
T COG5147 15 QTKRKGGSWKRTEDEDLKALVKKLGP----------------------NNWSKVASLLISSTGKQSSNRWNNHLNPQLKK 72 (512)
T ss_pred cceecCCCCCCcchhHHHHHHhhccc----------------------ccHHHHHHHhcccccccccchhhhhhchhccc
Confidence 45577899999999999999987754 3599999999989999999999999988 489
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHhhHHhhhC-CChHHHHHHhhhcc
Q 014781 212 RKWTPEELELVRKFYEKHGSDWKTMADTLG-KHRFHVKDAWRRIK 255 (419)
Q Consensus 212 g~WT~EEDe~L~~lv~~~G~~W~~IA~~LG-Rs~~qcr~Rwr~~l 255 (419)
+.||.|||..|+.+..++|+.|..||..++ |+..+|..||.+.+
T Consensus 73 ~~~~~eed~~li~l~~~~~~~wstia~~~d~rt~~~~~ery~~~~ 117 (512)
T COG5147 73 KNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTL 117 (512)
T ss_pred ccccHHHHHHHHHHHHhcCchhhhhccccCccchHHHHHHHHHHh
Confidence 999999999999999999999999999995 99999999999554
No 13
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.52 E-value=1.3e-13 Score=145.56 Aligned_cols=177 Identities=21% Similarity=0.255 Sum_probs=136.6
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccCcchhhhhHHHHHhhCCCCCHHHHHHHHHHhhCCC---CCCC
Q 014781 137 RGKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFERD---ENRK 213 (419)
Q Consensus 137 k~g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~~~~---~kg~ 213 (419)
.+|.||++|++.|..++.+. ...|..|+..| +|.+.+|..+|+.+..++ .+|.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~-----------------------g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~ 438 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEH-----------------------GNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGA 438 (607)
T ss_pred ccCCCCcchHHHHHHHHHHh-----------------------cccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCc
Confidence 68999999999999887654 35899999999 899999999999999865 8999
Q ss_pred CCHHHHHHHHHHHH-------Hh-------------------CCCHhhHHhhhC-CChHHHHHHhhhcc-cCCCCCCCCC
Q 014781 214 WTPEELELVRKFYE-------KH-------------------GSDWKTMADTLG-KHRFHVKDAWRRIK-LPNQKKGQWS 265 (419)
Q Consensus 214 WT~EEDe~L~~lv~-------~~-------------------G~~W~~IA~~LG-Rs~~qcr~Rwr~~l-~~~~~kg~WT 265 (419)
||.||.+.|+++|+ ++ +-+|..|++.+| |+..||+.+|..++ .+....+.|.
T Consensus 439 Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~~ 518 (607)
T KOG0051|consen 439 WSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQES 518 (607)
T ss_pred chHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhccccc
Confidence 99999999999996 33 128999999887 99999999999997 4566777777
Q ss_pred H-HHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCC-HHHHHHHHHHhcCCCCccCCCCChhchHHHH
Q 014781 266 Q-EEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRT-NAICCMKWYDQLTSPMVAEGKWADTDDFHLV 343 (419)
Q Consensus 266 ~-EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS-~~QCr~RW~~~L~~~~v~kg~Wt~eED~~Ll 343 (419)
. .+.-.|++-+.. ..-.....|.|..|+..+|+.+ +.+|+.+|.++...-..-.....++-...|+
T Consensus 519 ~~~~~v~l~ErL~d------------l~~~e~~~IDW~~l~~~~~g~~~~~e~r~q~~~lk~~I~~~k~kt~~E~~~~l~ 586 (607)
T KOG0051|consen 519 KGSDMVWLLERLSD------------LDLTEESPIDWKSLAEYAPGESTGEELRLQFERLKKKIPGWKKKTFSEIVDILI 586 (607)
T ss_pred ccchhHHHHHHHHh------------cccccCCccCHHHHHHhCCCCCcHHHHHHHHHhHhhccCCCCCccHHHHHHHHH
Confidence 6 234444444431 1111345699999999999888 9999999998875322233445555566666
Q ss_pred HHHHcC
Q 014781 344 NALSGL 349 (419)
Q Consensus 344 ~~i~~~ 349 (419)
+.+.-+
T Consensus 587 e~~~pl 592 (607)
T KOG0051|consen 587 EDLLPL 592 (607)
T ss_pred HHhccC
Confidence 666544
No 14
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.42 E-value=3.6e-13 Score=102.40 Aligned_cols=60 Identities=37% Similarity=0.807 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcCCCCccCCCCChhchHHH
Q 014781 264 WSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSPMVAEGKWADTDDFHL 342 (419)
Q Consensus 264 WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~~~~v~kg~Wt~eED~~L 342 (419)
||+|||+.|+.+|. .+|. +|..||..||.||+.||+.||+..|. +.+.+++|+.+||.+|
T Consensus 1 WT~eEd~~L~~~~~-------------~~g~-----~W~~Ia~~l~~Rt~~~~~~r~~~~l~-~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVK-------------KYGN-----DWKKIAEHLGNRTPKQCRNRWRNHLR-PKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHH-------------HHTS------HHHHHHHSTTS-HHHHHHHHHHTTS-TTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHH-------------HHCc-----CHHHHHHHHCcCCHHHHHHHHHHHCc-ccccCCCcCHHHHhcC
Confidence 99999999999998 6775 89999999988999999999999884 7899999999999887
No 15
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=2.4e-12 Score=132.34 Aligned_cols=100 Identities=22% Similarity=0.395 Sum_probs=94.6
Q ss_pred CccCCCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccCcchhhhhHHHHHhhCCCCCHHHHHHHHHHhhCC-CCCCC
Q 014781 135 FIRGKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFER-DENRK 213 (419)
Q Consensus 135 ~~k~g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~~~-~~kg~ 213 (419)
.+++|-|+..||++|+.+|..|+. +.|..|+..|+-.++.+||.||...++| .++.-
T Consensus 4 ~~kggvwrntEdeilkaav~kyg~----------------------nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~te 61 (617)
T KOG0050|consen 4 EIKGGVWRNTEDEVLKAAVMKYGK----------------------NQWSRIASLLNRKTARQCKARWEEWLDPAIKKTE 61 (617)
T ss_pred EEecceecccHHHHHHHHHHHcch----------------------HHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhh
Confidence 478999999999999999999986 6799999999988999999999999998 58999
Q ss_pred CCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhccc
Q 014781 214 WTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKL 256 (419)
Q Consensus 214 WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l~ 256 (419)
|+.|||+.|+.+.....+.|..||.+|||++.||..||.+++.
T Consensus 62 ws~eederlLhlakl~p~qwrtIa~i~gr~~~qc~eRy~~ll~ 104 (617)
T KOG0050|consen 62 WSREEDERLLHLAKLEPTQWRTIADIMGRTSQQCLERYNNLLD 104 (617)
T ss_pred hhhhHHHHHHHHHHhcCCccchHHHHhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998874
No 16
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.21 E-value=1.2e-11 Score=127.15 Aligned_cols=96 Identities=27% Similarity=0.522 Sum_probs=89.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-CHhhHHhhhC-CChHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHH
Q 014781 210 ENRKWTPEELELVRKFYEKHGS-DWKTMADTLG-KHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDLRMKASEE 287 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G~-~W~~IA~~LG-Rs~~qcr~Rwr~~l~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e 287 (419)
+.|-|+.-||+.|...|..||. .|+.|+..|. .|+.||+.||..+++|.+++..||.|||.+|+.+..
T Consensus 6 kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlak---------- 75 (617)
T KOG0050|consen 6 KGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAK---------- 75 (617)
T ss_pred ecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHH----------
Confidence 5689999999999999999996 9999999996 699999999999999999999999999999999987
Q ss_pred HhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhc
Q 014781 288 KRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQL 324 (419)
Q Consensus 288 ~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L 324 (419)
... ..|..|+..|| |+..||-.||.+.|
T Consensus 76 ---l~p-----~qwrtIa~i~g-r~~~qc~eRy~~ll 103 (617)
T KOG0050|consen 76 ---LEP-----TQWRTIADIMG-RTSQQCLERYNNLL 103 (617)
T ss_pred ---hcC-----CccchHHHHhh-hhHHHHHHHHHHHH
Confidence 344 38999999998 99999999999887
No 17
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.20 E-value=2.6e-11 Score=88.41 Aligned_cols=45 Identities=24% Similarity=0.471 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC-HhhHHhhhC--CChHHHHHHhhhcc
Q 014781 211 NRKWTPEELELVRKFYEKHGSD-WKTMADTLG--KHRFHVKDAWRRIK 255 (419)
Q Consensus 211 kg~WT~EEDe~L~~lv~~~G~~-W~~IA~~LG--Rs~~qcr~Rwr~~l 255 (419)
+++||+|||+.|+++|.+||.+ |..||..|| ||+.||+.||++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 5899999999999999999997 999999996 99999999999874
No 18
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.15 E-value=6.3e-11 Score=86.36 Aligned_cols=47 Identities=32% Similarity=0.684 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcC-CCCHHHHHHHHHHhc
Q 014781 261 KGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLS-TRTNAICCMKWYDQL 324 (419)
Q Consensus 261 kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~-~RS~~QCr~RW~~~L 324 (419)
+++||+||+..|+++|. .||. -+|..||..|| +||..||+.||++++
T Consensus 1 r~~Wt~eE~~~l~~~v~-------------~~g~----~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVK-------------KYGK----DNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHH-------------HSTT----THHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHH-------------HhCC----cHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 57999999999999999 8886 25999999999 999999999999875
No 19
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.88 E-value=3.6e-09 Score=75.37 Aligned_cols=46 Identities=28% Similarity=0.653 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHhhHHhhh-CCChHHHHHHhhhccc
Q 014781 211 NRKWTPEELELVRKFYEKHG-SDWKTMADTL-GKHRFHVKDAWRRIKL 256 (419)
Q Consensus 211 kg~WT~EEDe~L~~lv~~~G-~~W~~IA~~L-GRs~~qcr~Rwr~~l~ 256 (419)
+++||++||..|+.++..|| .+|..||..| +||+.+|+.+|..++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 47899999999999999999 8999999999 5999999999998753
No 20
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.74 E-value=2e-08 Score=71.46 Aligned_cols=47 Identities=40% Similarity=0.787 Sum_probs=43.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhc
Q 014781 261 KGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQL 324 (419)
Q Consensus 261 kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L 324 (419)
++.||++|+..|+.++. .+|. .+|..||..|++||+.+|+.+|+..+
T Consensus 1 ~~~Wt~~E~~~l~~~~~-------------~~g~----~~w~~Ia~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 1 KGEWTEEEDELLIELVK-------------KYGK----NNWEKIAKELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCCHHHHHHHHHHHH-------------HHCc----CCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 46899999999999998 7773 49999999999999999999999876
No 21
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.73 E-value=2e-08 Score=70.42 Aligned_cols=42 Identities=33% Similarity=0.741 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHHhC-CCHhhHHhhh-CCChHHHHHHhhhc
Q 014781 213 KWTPEELELVRKFYEKHG-SDWKTMADTL-GKHRFHVKDAWRRI 254 (419)
Q Consensus 213 ~WT~EEDe~L~~lv~~~G-~~W~~IA~~L-GRs~~qcr~Rwr~~ 254 (419)
+||++|+..|+.++..|| .+|..||..| +||+.+|+.+|..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 599999999999999999 8999999999 59999999999876
No 22
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.63 E-value=6.4e-08 Score=67.81 Aligned_cols=45 Identities=36% Similarity=0.694 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhc
Q 014781 263 QWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQL 324 (419)
Q Consensus 263 ~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L 324 (419)
+||.+|+..|+.++. .+|. .+|..||..|++||..+|+.+|++++
T Consensus 1 ~Wt~eE~~~l~~~~~-------------~~g~----~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVK-------------KYGK----NNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHH-------------HHCc----CCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 599999999999998 7773 58999999999999999999998753
No 23
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.23 E-value=0.0007 Score=51.36 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CH---hhHHhhhC--C-ChHHHHHHhhhcc
Q 014781 211 NRKWTPEELELVRKFYEKHGS-DW---KTMADTLG--K-HRFHVKDAWRRIK 255 (419)
Q Consensus 211 kg~WT~EEDe~L~~lv~~~G~-~W---~~IA~~LG--R-s~~qcr~Rwr~~l 255 (419)
+-.||+||...++.++..+|. +| ..|+..|+ + |+.||+.+.+.+.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 467999999999999999997 99 99999995 6 9999999988763
No 24
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=97.05 E-value=0.00047 Score=62.45 Aligned_cols=47 Identities=21% Similarity=0.336 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHh---CC----CHhhHHhhhCCChHHHHHHhhhccc
Q 014781 210 ENRKWTPEELELVRKFYEKH---GS----DWKTMADTLGKHRFHVKDAWRRIKL 256 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~---G~----~W~~IA~~LGRs~~qcr~Rwr~~l~ 256 (419)
....||.|||..|.+.|..| |. .+..+|..||||+.+|.-||..++.
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~RTsAACGFRWNs~VR 56 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALNRTAAACGFRWNAYVR 56 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHcccHHHhcchHHHHHH
Confidence 35689999999999999999 53 8999999999999999999998874
No 25
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.83 E-value=0.0016 Score=52.76 Aligned_cols=59 Identities=29% Similarity=0.501 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhc---C-CCCHHHHHHHHHHhc
Q 014781 262 GQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKL---S-TRTNAICCMKWYDQL 324 (419)
Q Consensus 262 g~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m---~-~RS~~QCr~RW~~~L 324 (419)
..||.+|...|+.++.+.+...... .-+......-|..||..| | .||+.||+.||.++.
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~----~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~ 64 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFD----NGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK 64 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHH----H--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh----hhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4799999999999998621111000 001111223699999999 3 799999999999875
No 26
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.75 E-value=0.0022 Score=66.22 Aligned_cols=50 Identities=18% Similarity=0.445 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcC
Q 014781 259 QKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLT 325 (419)
Q Consensus 259 ~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~ 325 (419)
+-...||.+|+-.|++++. .+|. .||..||.+||+||...|+.+|.+++-
T Consensus 70 i~~~~WtadEEilLLea~~-------------t~G~----GNW~dIA~hIGtKtkeeck~hy~k~fv 119 (438)
T KOG0457|consen 70 ILDPSWTADEEILLLEAAE-------------TYGF----GNWQDIADHIGTKTKEECKEHYLKHFV 119 (438)
T ss_pred CCCCCCChHHHHHHHHHHH-------------HhCC----CcHHHHHHHHcccchHHHHHHHHHHHh
Confidence 4566899999999999998 5554 499999999999999999999998763
No 27
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=96.67 E-value=0.0013 Score=53.27 Aligned_cols=44 Identities=30% Similarity=0.766 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHH------hC--C------CHhhHHhhh---C--CChHHHHHHhhhcc
Q 014781 212 RKWTPEELELVRKFYEK------HG--S------DWKTMADTL---G--KHRFHVKDAWRRIK 255 (419)
Q Consensus 212 g~WT~EEDe~L~~lv~~------~G--~------~W~~IA~~L---G--Rs~~qcr~Rwr~~l 255 (419)
..||.+|...|+.++.. ++ . -|..||..| | ||+.||+.+|.++.
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~ 64 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK 64 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 57999999999999887 11 1 699999998 4 99999999999885
No 28
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=96.59 E-value=0.0061 Score=46.27 Aligned_cols=47 Identities=17% Similarity=0.279 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCch---hHhhhhcC-CC-CHHHHHHHHHHhc
Q 014781 261 KGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISW---EAISEKLS-TR-TNAICCMKWYDQL 324 (419)
Q Consensus 261 kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W---~~IS~~m~-~R-S~~QCr~RW~~~L 324 (419)
+-.||+||...++++|. .+|. .+| ..|++.|+ ++ |..||+.+...+.
T Consensus 3 r~~WT~eeh~~Fl~ai~-------------~~G~----g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQ-------------KLGG----PDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCHHHHHHHHHHHH-------------HhCC----CcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 45899999999999998 6663 489 99999997 67 9999999877654
No 29
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.57 E-value=0.003 Score=65.17 Aligned_cols=47 Identities=26% Similarity=0.474 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-CHhhHHhhhC-CChHHHHHHhhhccc
Q 014781 210 ENRKWTPEELELVRKFYEKHGS-DWKTMADTLG-KHRFHVKDAWRRIKL 256 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G~-~W~~IA~~LG-Rs~~qcr~Rwr~~l~ 256 (419)
-...||.+|+-.|++++..||- +|..||.+|| |+..+|.++|.++..
T Consensus 71 ~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv 119 (438)
T KOG0457|consen 71 LDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV 119 (438)
T ss_pred CCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence 5678999999999999999995 9999999998 899999999999863
No 30
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=96.56 E-value=0.0023 Score=66.44 Aligned_cols=45 Identities=24% Similarity=0.493 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHhhHHhhhC-CChHHHHHHhhhc
Q 014781 210 ENRKWTPEELELVRKFYEKHGSDWKTMADTLG-KHRFHVKDAWRRI 254 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G~~W~~IA~~LG-Rs~~qcr~Rwr~~ 254 (419)
....||.+|...|++.++.||.+|.+||.++| +|..||.-++.++
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 35689999999999999999999999999997 9999999999877
No 31
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=96.44 E-value=0.0034 Score=66.77 Aligned_cols=45 Identities=29% Similarity=0.499 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHhhHHhhhC-CChHHHHHHhhhc
Q 014781 210 ENRKWTPEELELVRKFYEKHGSDWKTMADTLG-KHRFHVKDAWRRI 254 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G~~W~~IA~~LG-Rs~~qcr~Rwr~~ 254 (419)
.++.||.+|.-.|++.++.||.+|..||.++| ||..||..++.++
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence 57889999999999999999999999999996 9999999999987
No 32
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=96.30 E-value=0.013 Score=55.33 Aligned_cols=115 Identities=17% Similarity=0.282 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcC---CCCHHHHHHHHHHhcCCCCc----------
Q 014781 263 QWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLS---TRTNAICCMKWYDQLTSPMV---------- 329 (419)
Q Consensus 263 ~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~---~RS~~QCr~RW~~~L~~~~v---------- 329 (419)
.|++..|-.|+.+|. +|. +=..|+.-+. .-|-.-+..||+.+|-+|.+
T Consensus 1 rW~~~DDl~Li~av~--------------~~~-----~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~ 61 (199)
T PF13325_consen 1 RWKPEDDLLLINAVE--------------QTN-----DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRN 61 (199)
T ss_pred CCCchhhHHHHHHHH--------------Hhc-----CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHh
Confidence 599999999999996 332 4455555553 56778899999998876654
Q ss_pred ----------cCCCCChhchHHHHHHHHcCCCCCCCCCCccccc--------CCCCHHHHHHHHHHHHhhh--CC-----
Q 014781 330 ----------AEGKWADTDDFHLVNALSGLDACCMDDVDWDNLL--------EHRSGTFCRKRWNQMVKHL--GT----- 384 (419)
Q Consensus 330 ----------~kg~Wt~eED~~Ll~~i~~~g~~~e~~i~W~~I~--------~~Rs~~qcr~RW~~l~k~v--~~----- 384 (419)
.+-.||.+|+.+|......... .--.|..|+ ++||+.++...|..|+++. ++
T Consensus 62 l~p~~~~~iq~kalfS~~EE~lL~~v~s~~~p---~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~DQ~v~~ 138 (199)
T PF13325_consen 62 LHPELIAAIQSKALFSKEEEQLLGTVASSSQP---SLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLPDQSVQP 138 (199)
T ss_pred CCcchhhcccccCCCCHHHHHHHHhhhhccCC---cHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhhccccCC
Confidence 3567999999999986544321 123666663 2599999999999987643 11
Q ss_pred -C----CCCCHHHHHHHHHH
Q 014781 385 -D----GNKSFPEQVEILST 399 (419)
Q Consensus 385 -~----~~~~f~eiv~~L~~ 399 (419)
. .-.+|.|.-+.|-+
T Consensus 139 ~~~~~~~~~sfsDaEd~i~d 158 (199)
T PF13325_consen 139 LPKQDDQVLSFSDAEDLIDD 158 (199)
T ss_pred CCCCCccccccccHHHHhhc
Confidence 1 22477666665544
No 33
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=95.82 E-value=0.011 Score=63.02 Aligned_cols=47 Identities=17% Similarity=0.540 Sum_probs=43.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHh
Q 014781 259 QKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQ 323 (419)
Q Consensus 259 ~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~ 323 (419)
...+.||.+|..+|+++|. .||. +|.+||.++++||..||-.+|...
T Consensus 251 ~~~~~WT~qE~lLLLE~ie-------------~y~d-----dW~kVa~hVg~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIE-------------MYGD-----DWNKVADHVGTKSQEQCILKFLRL 297 (506)
T ss_pred cCCCCccHHHHHHHHHHHH-------------Hhcc-----cHHHHHhccCCCCHHHHHHHHHhc
Confidence 4567899999999999999 7887 999999999999999999999865
No 34
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=95.73 E-value=0.01 Score=61.75 Aligned_cols=46 Identities=20% Similarity=0.549 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHh
Q 014781 260 KKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQ 323 (419)
Q Consensus 260 ~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~ 323 (419)
....||.+|..+|++.|+ .||. .|.+||.++|++|..||--+|.++
T Consensus 278 ~dk~WS~qE~~LLLEGIe-------------~ygD-----dW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIE-------------MYGD-----DWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHH-------------Hhhh-----hHHHHHHHhCCCCHHHHHHHHHcC
Confidence 445899999999999999 7897 999999999999999999999865
No 35
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=95.58 E-value=0.0088 Score=54.99 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=40.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-------CHhhHHhhhCCChHHHHHHhhhccc
Q 014781 210 ENRKWTPEELELVRKFYEKHGS-------DWKTMADTLGKHRFHVKDAWRRIKL 256 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G~-------~W~~IA~~LGRs~~qcr~Rwr~~l~ 256 (419)
....||.|+|..|.+.|..|+. -...++..|+||+.+|..||..++.
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs~vr 57 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRWNSVVR 57 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHHHHHHH
Confidence 4578999999999999999953 7888899999999999999966653
No 36
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=95.57 E-value=0.014 Score=53.08 Aligned_cols=54 Identities=24% Similarity=0.480 Sum_probs=42.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcC
Q 014781 260 KKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLT 325 (419)
Q Consensus 260 ~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~ 325 (419)
+...||.|||..|.+.|-.+++.-..| . --+..|+..++ ||+..|.-||+..+.
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQ-----L------~AFeEvg~~L~-RTsAACGFRWNs~VR 56 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQ-----L------SAFEEVGRALN-RTAAACGFRWNAYVR 56 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHH-----H------HHHHHHHHHHc-ccHHHhcchHHHHHH
Confidence 567999999999999998766422111 1 14677888887 999999999999885
No 37
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=94.68 E-value=0.16 Score=48.02 Aligned_cols=95 Identities=19% Similarity=0.264 Sum_probs=68.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCHhhHHhhhC----CChHHHHHHhhhccc-C--------------------CCCCCCCCHH
Q 014781 213 KWTPEELELVRKFYEKHGSDWKTMADTLG----KHRFHVKDAWRRIKL-P--------------------NQKKGQWSQE 267 (419)
Q Consensus 213 ~WT~EEDe~L~~lv~~~G~~W~~IA~~LG----Rs~~qcr~Rwr~~l~-~--------------------~~~kg~WT~E 267 (419)
+|++++|-.|+..|. +|++-..|+..+. -|...+..||+.++. | ...+-.||.+
T Consensus 1 rW~~~DDl~Li~av~-~~~~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~~ 79 (199)
T PF13325_consen 1 RWKPEDDLLLINAVE-QTNDLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSKE 79 (199)
T ss_pred CCCchhhHHHHHHHH-HhcCHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCHH
Confidence 599999999999987 4667777776662 488999999999874 1 1356789999
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhh----hc-CCCCHHHHHHHHHHh
Q 014781 268 EYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISE----KL-STRTNAICCMKWYDQ 323 (419)
Q Consensus 268 ED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~----~m-~~RS~~QCr~RW~~~ 323 (419)
|++.|..+..... .. .-.+..|=. .| ++||+.+...+|..+
T Consensus 80 EE~lL~~v~s~~~------------p~---le~Fq~LL~~n~~vFh~sRTak~L~~HW~lm 125 (199)
T PF13325_consen 80 EEQLLGTVASSSQ------------PS---LETFQELLDKNRSVFHPSRTAKSLQDHWRLM 125 (199)
T ss_pred HHHHHHhhhhccC------------Cc---HHHHHHHHHhChhhhccccCHHHHHHHHHHH
Confidence 9999999764210 00 012333222 22 589999999999974
No 38
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=94.66 E-value=0.039 Score=43.77 Aligned_cols=45 Identities=27% Similarity=0.626 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHh-----C------------CCHhhHHhhh------CCChHHHHHHhhhcc
Q 014781 211 NRKWTPEELELVRKFYEKH-----G------------SDWKTMADTL------GKHRFHVKDAWRRIK 255 (419)
Q Consensus 211 kg~WT~EEDe~L~~lv~~~-----G------------~~W~~IA~~L------GRs~~qcr~Rwr~~l 255 (419)
...||++|...|+++|.+| | ..|..|+..| .||+.+|+.+|.++.
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 4679999999999999988 2 1899999999 299999999999985
No 39
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=94.63 E-value=0.058 Score=42.01 Aligned_cols=55 Identities=18% Similarity=0.128 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccCcchhhhhHHHHHhhCC-CCCHHHHHHHHHHhhCC
Q 014781 140 RFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALP-WRPCESIYYRAHILFER 208 (419)
Q Consensus 140 ~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP-~R~~~s~y~r~~~~~~~ 208 (419)
+||.+||++|...|..+...- . ...-...|.+++..-| .+|.+|...||.+.+.+
T Consensus 4 ~fT~edD~~l~~~v~~~~~~~-~-------------~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~ 59 (65)
T PF08914_consen 4 PFTEEDDAALLDYVKENERQG-G-------------SVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRG 59 (65)
T ss_dssp ---HHHHHHHHHHHHHT--ST-T-------------TTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT--
T ss_pred CCCHHHHHHHHHHHHHhccCC-C-------------CCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 699999999999998875421 0 0112368999999888 89999999999887753
No 40
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=94.56 E-value=0.15 Score=40.28 Aligned_cols=58 Identities=26% Similarity=0.311 Sum_probs=43.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhcc-----CcchhhhhHHHHHhhC-----CCCCHHHHHHHHHHhh
Q 014781 138 GKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCR-----SYPEIKHCWKEIGAAL-----PWRPCESIYYRAHILF 206 (419)
Q Consensus 138 ~g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~-----~~~e~~~~W~~IA~~L-----P~R~~~s~y~r~~~~~ 206 (419)
...||++|..+|.+.|..|... +.++ ........|..|+..| +.|+..++..+|.++.
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~i-----------l~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDI-----------LENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHH-----------HhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 4679999999999999998542 2111 1124568999999776 3599999999998764
No 41
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=93.14 E-value=0.16 Score=39.54 Aligned_cols=55 Identities=18% Similarity=0.342 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhc-CCcCCCCchhHhhhhcC-CCCHHHHHHHHHHhcC
Q 014781 261 KGQWSQEEYQKLFALVNMDLRMKASEEKRTKH-GMLRDNISWEAISEKLS-TRTNAICCMKWYDQLT 325 (419)
Q Consensus 261 kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~-G~~~~~i~W~~IS~~m~-~RS~~QCr~RW~~~L~ 325 (419)
+.++|.+||+.|+..|.+.- .. +.+.++.=|..+++..+ .+|.+.-|+||...|.
T Consensus 2 R~~fT~edD~~l~~~v~~~~----------~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~ 58 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENE----------RQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLR 58 (65)
T ss_dssp -----HHHHHHHHHHHHHT------------STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-
T ss_pred CCCCCHHHHHHHHHHHHHhc----------cCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 45899999999999997421 22 23445567999999998 8999999999999884
No 42
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=91.76 E-value=0.3 Score=45.06 Aligned_cols=54 Identities=20% Similarity=0.326 Sum_probs=43.2
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccCcchhhhhHHHHHhhCCCCCHHHHHHHHHHhh
Q 014781 136 IRGKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILF 206 (419)
Q Consensus 136 ~k~g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~ 206 (419)
.+...||.++|.+|.+.|.+++..-+. .-.....++..| +|++.+|+.||...+
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~t----------------ql~afe~~g~~L-~rt~aac~fRwNs~v 56 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGT----------------QLKAFEEVGDAL-KRTAAACGFRWNSVV 56 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccch----------------HHHHHHHHHHHH-hhhHHHHHhHHHHHH
Confidence 456789999999999999999874332 224678889999 899999999995544
No 43
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=90.74 E-value=0.25 Score=49.56 Aligned_cols=47 Identities=19% Similarity=0.466 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-CHhhHHhhhC-CChHHHHHHhhhccc
Q 014781 210 ENRKWTPEELELVRKFYEKHGS-DWKTMADTLG-KHRFHVKDAWRRIKL 256 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G~-~W~~IA~~LG-Rs~~qcr~Rwr~~l~ 256 (419)
---.|+..|+-.|++.....|- +|..||.++| |+...|+++|..+..
T Consensus 62 ~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 62 GEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred cCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 4556999999999999999995 9999999998 999999999998864
No 44
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=90.26 E-value=0.29 Score=49.03 Aligned_cols=47 Identities=17% Similarity=0.394 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhc
Q 014781 261 KGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQL 324 (419)
Q Consensus 261 kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L 324 (419)
--.|+.+|+..|++... ..|. .+|..||..+|.|+...|+.+|..++
T Consensus 63 ~e~WgadEEllli~~~~-------------TlGl----GNW~dIadyiGsr~kee~k~HylK~y 109 (432)
T COG5114 63 EEGWGADEELLLIECLD-------------TLGL----GNWEDIADYIGSRAKEEIKSHYLKMY 109 (432)
T ss_pred CCCcCchHHHHHHHHHH-------------hcCC----CcHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34799999999999997 4453 49999999999999999999999775
No 45
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=90.08 E-value=0.55 Score=54.56 Aligned_cols=144 Identities=17% Similarity=0.294 Sum_probs=91.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CHhhHHhhh-CCChHHHHHHhhhcccCCCCCCCCC-HHHHHHHHHHHHHHHHhhhhHHH
Q 014781 212 RKWTPEELELVRKFYEKHGS-DWKTMADTL-GKHRFHVKDAWRRIKLPNQKKGQWS-QEEYQKLFALVNMDLRMKASEEK 288 (419)
Q Consensus 212 g~WT~EEDe~L~~lv~~~G~-~W~~IA~~L-GRs~~qcr~Rwr~~l~~~~~kg~WT-~EED~~L~~lV~~~l~~~~~~e~ 288 (419)
+.||.-+-..++.+..+||. +-..||..| |+|+..|+.-..-... .++ -.+..+++.-+..- +++
T Consensus 825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~------~~~~~~~~~~~~~~ie~~------e~~ 892 (1033)
T PLN03142 825 STWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWE------RYKELNDYDRIIKNIERG------EAR 892 (1033)
T ss_pred CcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHH------hhhhhccHHHHHHHHHHH------HHH
Confidence 56999999999999999996 999999999 8999999854332221 001 12334444444321 000
Q ss_pred hhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhc-CCCCccCCCCChhchHHHHHHHHcCCCCCCCCCCcccc-----
Q 014781 289 RTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQL-TSPMVAEGKWADTDDFHLVNALSGLDACCMDDVDWDNL----- 362 (419)
Q Consensus 289 ~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L-~~~~v~kg~Wt~eED~~Ll~~i~~~g~~~e~~i~W~~I----- 362 (419)
-.... .--..|...| .+|++-|..+- .-+..+...++.+||..||..+..+|. ..|..|
T Consensus 893 ~~~~~-----~~~~~~~~k~-----~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~-----~~~~~~~~~i~ 957 (1033)
T PLN03142 893 ISRKD-----EIMKAIGKKL-----DRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGY-----GNWDELKAAFR 957 (1033)
T ss_pred HHHHH-----HHHHHHHHHH-----HHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhcc-----chHHHHHHHHH
Confidence 00000 0012222222 34444555432 112334456999999999999999997 459887
Q ss_pred -c---------CCCCHHHHHHHHHHHHhhh
Q 014781 363 -L---------EHRSGTFCRKRWNQMVKHL 382 (419)
Q Consensus 363 -~---------~~Rs~~qcr~RW~~l~k~v 382 (419)
. ..||+..+.+|=+.|++.|
T Consensus 958 ~~~~f~fd~~~~srt~~~~~~r~~~l~~~~ 987 (1033)
T PLN03142 958 TSPLFRFDWFVKSRTPQELARRCDTLIRLI 987 (1033)
T ss_pred hCCceeeehhhccCCHHHHHHHHHHHHHHH
Confidence 2 2599999999999998766
No 46
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=87.43 E-value=0.94 Score=46.06 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhc---C-CCCHHHHHHHHHHhcC
Q 014781 261 KGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKL---S-TRTNAICCMKWYDQLT 325 (419)
Q Consensus 261 kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m---~-~RS~~QCr~RW~~~L~ 325 (419)
...|+.+|-..|+.+..+....- ..|... ..-|..||+.| | .||+.||+.||.++..
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~-------~~~~~k-~~~We~va~k~~~~g~~rs~~qck~K~~nl~k 114 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVAL-------RRGKLK-GPLWEEVARKMAELGYPRSPKQCKAKIENLKK 114 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH-------Hhhhhc-ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 36899999999999998532211 111111 24699999977 3 7999999999998863
No 47
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=87.30 E-value=0.85 Score=46.38 Aligned_cols=46 Identities=20% Similarity=0.399 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHHh----------CCCHhhHHhhh---C--CChHHHHHHhhhccc
Q 014781 211 NRKWTPEELELVRKFYEKH----------GSDWKTMADTL---G--KHRFHVKDAWRRIKL 256 (419)
Q Consensus 211 kg~WT~EEDe~L~~lv~~~----------G~~W~~IA~~L---G--Rs~~qcr~Rwr~~l~ 256 (419)
...|+.+|-..|+++.... +..|..||..| | ||+.||+.+|.++..
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k 114 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKK 114 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 3789999999999988644 34899999966 4 999999999998863
No 48
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=86.10 E-value=1.5 Score=31.00 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhCC-CHhhHHhhhCCChHHHHHHhhhc
Q 014781 217 EELELVRKFYEKHGS-DWKTMADTLGKHRFHVKDAWRRI 254 (419)
Q Consensus 217 EEDe~L~~lv~~~G~-~W~~IA~~LGRs~~qcr~Rwr~~ 254 (419)
+=|..|+.+....|. .|..||..+|=|+..|..|++++
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~lglS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEELGLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHCcCHHHHHHHHHHh
Confidence 347778888888886 99999999999999999998864
No 49
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=82.54 E-value=8.3 Score=45.11 Aligned_cols=164 Identities=16% Similarity=0.268 Sum_probs=102.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhc-cCcchhhhhHHHHHhhCCCCCHHHHHHHHHHhhCCCCCCCC
Q 014781 136 IRGKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHC-RSYPEIKHCWKEIGAALPWRPCESIYYRAHILFERDENRKW 214 (419)
Q Consensus 136 ~k~g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~-~~~~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~~~~~kg~W 214 (419)
....+.|.+|.+.-.+++.+- -.+|+..+|..++.. .++. +.....||..|.+.+...|..+......+...
T Consensus 803 ~~~~~lt~~e~~~k~~l~~~g--f~~w~~~~f~~f~~~~~~~g--r~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~--- 875 (1033)
T PLN03142 803 EPGDPLTAEEQEEKEQLLEEG--FSTWSRRDFNAFIRACEKYG--RNDIKSIASEMEGKTEEEVERYAKVFWERYKE--- 875 (1033)
T ss_pred ccCCCCCHHHHHHHHHHHhcC--cCcccHHHHHHHHHHHHHhC--HhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhh---
Confidence 345679998887776665431 145677777766643 2222 46789999999999999998877655543110
Q ss_pred CHHHHHHHHHHHHHhCC---CHhhHHhhhCCChHHHHHHhhhccc--CCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHh
Q 014781 215 TPEELELVRKFYEKHGS---DWKTMADTLGKHRFHVKDAWRRIKL--PNQKKGQWSQEEYQKLFALVNMDLRMKASEEKR 289 (419)
Q Consensus 215 T~EEDe~L~~lv~~~G~---~W~~IA~~LGRs~~qcr~Rwr~~l~--~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~ 289 (419)
-.+.++++.-++.-.. .=..+-..|.+-..+|..-|..+.- +..++..+|.|||.-|+-.+.
T Consensus 876 -~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~------------ 942 (1033)
T PLN03142 876 -LNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVH------------ 942 (1033)
T ss_pred -hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHH------------
Confidence 1222333333332211 2223334444555667777776642 344455799999999998888
Q ss_pred hhcCCcCCCCchhHhhhhc------------CCCCHHHHHHHHHHhc
Q 014781 290 TKHGMLRDNISWEAISEKL------------STRTNAICCMKWYDQL 324 (419)
Q Consensus 290 ~~~G~~~~~i~W~~IS~~m------------~~RS~~QCr~RW~~~L 324 (419)
.+|- -+|..|-..+ .+||+..+..|-..+|
T Consensus 943 -~~g~----~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~ 984 (1033)
T PLN03142 943 -KLGY----GNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI 984 (1033)
T ss_pred -Hhcc----chHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence 5663 2598884332 2699999998877766
No 50
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=82.40 E-value=1.8 Score=44.52 Aligned_cols=44 Identities=20% Similarity=0.394 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHh
Q 014781 262 GQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQ 323 (419)
Q Consensus 262 g~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~ 323 (419)
-+||.+|..++..++. ..|+ .+..||..+|+|++.|+..+|.+-
T Consensus 366 ~~Ws~~e~ekFYKALs-------------~wGt-----dF~LIs~lfP~R~RkqIKaKfi~E 409 (507)
T COG5118 366 LRWSKKEIEKFYKALS-------------IWGT-----DFSLISSLFPNRERKQIKAKFIKE 409 (507)
T ss_pred CcccHHHHHHHHHHHH-------------Hhcc-----hHHHHHHhcCchhHHHHHHHHHHH
Confidence 3899999999999998 7884 999999999999999999999864
No 51
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=81.78 E-value=2.4 Score=36.93 Aligned_cols=47 Identities=11% Similarity=0.294 Sum_probs=36.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC----CHhhHHhhhC-------------CChHHHHHHhhhcc
Q 014781 209 DENRKWTPEELELVRKFYEKHGS----DWKTMADTLG-------------KHRFHVKDAWRRIK 255 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G~----~W~~IA~~LG-------------Rs~~qcr~Rwr~~l 255 (419)
+.+..||.+||..|+-++..||- .|..|-..+- ||+..+..|...++
T Consensus 47 ~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi 110 (118)
T PF09111_consen 47 NKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLI 110 (118)
T ss_dssp SS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHH
T ss_pred CCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHH
Confidence 57889999999999999999996 9999988752 77888777766554
No 52
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=81.77 E-value=5.8 Score=41.85 Aligned_cols=97 Identities=14% Similarity=0.207 Sum_probs=66.4
Q ss_pred CCCHH---HHHHHHHHHHHHHHHcCCCcchhhhhhhccCcchhhhhHHHHHhhCCCCCHHHHHHHHHHhhCCCCCCCCCH
Q 014781 140 RFSLE---EDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFERDENRKWTP 216 (419)
Q Consensus 140 ~wT~e---Ed~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~~~~~kg~WT~ 216 (419)
-|++- .|+.|.+.|..-...+++..++...||..-.+. |=..++. |++|+ .....||.
T Consensus 132 iWsp~~~i~D~kL~EYI~~A~~rY~i~ieqAL~iL~~h~~d----~d~A~~~-l~rr~--------------~~~d~WT~ 192 (534)
T KOG1194|consen 132 IWSPPLEIQDDKLEEYISEAKERYGIPIEQALFILFWHKHD----FDLAHAD-LARRT--------------EFPDEWTA 192 (534)
T ss_pred eecCcccCcHHHHHHHHHHHHHhcCCcHHHHHHHHHhhccc----chHHHHH-HhhcC--------------CCcccchH
Confidence 36643 256888888777777999888765544321111 1111221 22211 13367999
Q ss_pred HHHHHHHHHHHHhCCCHhhHHhhh-CCChHHHHHHhhhcc
Q 014781 217 EELELVRKFYEKHGSDWKTMADTL-GKHRFHVKDAWRRIK 255 (419)
Q Consensus 217 EEDe~L~~lv~~~G~~W~~IA~~L-GRs~~qcr~Rwr~~l 255 (419)
||--++-.++..||.++..|-.+| .|+-..+...|....
T Consensus 193 Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~K 232 (534)
T KOG1194|consen 193 EDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWK 232 (534)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHH
Confidence 999999999999999999999999 599999888877654
No 53
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=80.23 E-value=2.7 Score=30.53 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhc
Q 014781 216 PEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRI 254 (419)
Q Consensus 216 ~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~ 254 (419)
++++..+..++--.|-.|.+||..+|.|+..|+.+..+.
T Consensus 12 ~~~~r~i~~l~~~~g~s~~eIa~~l~~s~~~v~~~l~ra 50 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMSYAEIAEILGISESTVKRRLRRA 50 (54)
T ss_dssp -HHHHHHHHHHHTS---HHHHHHHCTS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 467788888888889999999999999999999887764
No 54
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=79.81 E-value=2.7 Score=34.11 Aligned_cols=43 Identities=23% Similarity=0.695 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHHHh---CC----------CHhhHHhhhC------CChHHHHHHhhhcc
Q 014781 213 KWTPEELELVRKFYEKH---GS----------DWKTMADTLG------KHRFHVKDAWRRIK 255 (419)
Q Consensus 213 ~WT~EEDe~L~~lv~~~---G~----------~W~~IA~~LG------Rs~~qcr~Rwr~~l 255 (419)
.||++.++.|++++... |. .|..|+..|. .+..||..||..+.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk 62 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLK 62 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence 59999999999998655 21 6999999882 58899999988774
No 55
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=79.29 E-value=3.1 Score=33.80 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhHHHhhh-cCCcCCCCchhHhhhhcC-----CCCHHHHHHHHHHhc
Q 014781 263 QWSQEEYQKLFALVNMDLRMKASEEKRTK-HGMLRDNISWEAISEKLS-----TRTNAICCMKWYDQL 324 (419)
Q Consensus 263 ~WT~EED~~L~~lV~~~l~~~~~~e~~~~-~G~~~~~i~W~~IS~~m~-----~RS~~QCr~RW~~~L 324 (419)
.||++.+..|++++.+....-. . -+......-|..|+..|. ..+..||++||..+-
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~------~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk 62 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGN------RPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLK 62 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCC------CCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence 5999999999999975322110 1 122233456999999984 467899999988654
No 56
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=78.49 E-value=2.2 Score=37.11 Aligned_cols=53 Identities=15% Similarity=0.282 Sum_probs=41.3
Q ss_pred CccCCCCChhchHHHHHHHHcCCCCCCCCCCcccc------cC---------CCCHHHHHHHHHHHHhhh
Q 014781 328 MVAEGKWADTDDFHLVNALSGLDACCMDDVDWDNL------LE---------HRSGTFCRKRWNQMVKHL 382 (419)
Q Consensus 328 ~v~kg~Wt~eED~~Ll~~i~~~g~~~e~~i~W~~I------~~---------~Rs~~qcr~RW~~l~k~v 382 (419)
..++..||.+||..||..+..+|. +.+..|..| .| .||+..+..|=+.|++.|
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~--~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i 113 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGY--DAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI 113 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTT--TSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCC--CCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence 556778999999999999999995 555688887 22 599999999999998765
No 57
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=74.78 E-value=4.1 Score=42.00 Aligned_cols=70 Identities=21% Similarity=0.396 Sum_probs=57.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHhhHHhhh-CCChHHHHHHhhhcc--cCC------CCCCCCCHHHHHHHHHHHHHH
Q 014781 210 ENRKWTPEELELVRKFYEKHGSDWKTMADTL-GKHRFHVKDAWRRIK--LPN------QKKGQWSQEEYQKLFALVNMD 279 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G~~W~~IA~~L-GRs~~qcr~Rwr~~l--~~~------~~kg~WT~EED~~L~~lV~~~ 279 (419)
+.-+||.+|-++...+....|.++..|+.++ .|+..||..+|.+-- .|. ..+-++..+|.-.|...+.+-
T Consensus 364 ~~~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY~k~~~~~~e~ 442 (507)
T COG5118 364 GALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEYNKLRSYLLEK 442 (507)
T ss_pred CCCcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHHhhHHHHHHHH
Confidence 5568999999999999999999999999999 599999999987642 221 245588889988777766653
No 58
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=72.69 E-value=5.4 Score=35.69 Aligned_cols=41 Identities=7% Similarity=0.040 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCC-CHhhHHhhhCCChHHHHHHhhhcccC
Q 014781 217 EELELVRKFYEKHGS-DWKTMADTLGKHRFHVKDAWRRIKLP 257 (419)
Q Consensus 217 EEDe~L~~lv~~~G~-~W~~IA~~LGRs~~qcr~Rwr~~l~~ 257 (419)
+-|..|+.+..+.|. .|+.||+.+|-|+..|+.|++++...
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~~lglS~~tV~~Ri~rL~~~ 50 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAKQFGVSPGTIHVRVEKMKQA 50 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 568888888888886 99999999999999999999999754
No 59
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=64.21 E-value=8.2 Score=35.00 Aligned_cols=43 Identities=12% Similarity=0.079 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhCC-CHhhHHhhhCCChHHHHHHhhhcccCC
Q 014781 216 PEELELVRKFYEKHGS-DWKTMADTLGKHRFHVKDAWRRIKLPN 258 (419)
Q Consensus 216 ~EEDe~L~~lv~~~G~-~W~~IA~~LGRs~~qcr~Rwr~~l~~~ 258 (419)
.+-|.+|+.+....|. .|..||+.+|=|+..|+.|++++....
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lglS~~tv~~Ri~rL~~~G 56 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQG 56 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCC
Confidence 4568888888888886 999999999999999999999997543
No 60
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=64.09 E-value=11 Score=39.74 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccCcchhhhhHHHHHhhCCCCCHHHHHHHHHH
Q 014781 140 RFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHI 204 (419)
Q Consensus 140 ~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP~R~~~s~y~r~~~ 204 (419)
.||.||.-++.++...|++ .+..|.+.||+|+..++..+|+.
T Consensus 189 ~WT~Ed~vlFe~aF~~~GK-----------------------~F~kIrq~LP~rsLaSlvqyYy~ 230 (534)
T KOG1194|consen 189 EWTAEDIVLFEQAFQFFGK-----------------------DFHKIRQALPHRSLASLVQYYYS 230 (534)
T ss_pred cchHHHHHHHHHHHHHhcc-----------------------cHHHHHHHccCccHHHHHHHHHH
Confidence 5888888888888888765 67899999999999998887743
No 61
>PF09197 Rap1-DNA-bind: Rap1, DNA-binding; InterPro: IPR015280 Members of this entry, which are predominantly found in the yeast protein Rap1, assume a secondary structure consisting of a three-helix bundle and an N-terminal arm. They contain an Arg-Asp-Arg-Lys sequence that interacts with an ACAregion in the 3, region of the DNA-binding site []. ; PDB: 1IGN_A 3UKG_A.
Probab=64.04 E-value=28 Score=29.77 Aligned_cols=68 Identities=13% Similarity=0.185 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHc--CCCcchhhhhh-hcc-C----cchhhhhHHHHHhhCCCCCHHHHHHHHHHhhC
Q 014781 140 RFSLEEDEMIKKAVINYIEAH--RLGEDGLNMVL-HCR-S----YPEIKHCWKEIGAALPWRPCESIYYRAHILFE 207 (419)
Q Consensus 140 ~wT~eEd~~L~~aV~~y~~~~--~l~~e~l~~l~-~~~-~----~~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~~ 207 (419)
+||++||-.|..+|..|.... ..+.+.-..++ ... + ......|...++...|..|..+=+.||+..+.
T Consensus 1 kfTA~dDY~Lc~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fF~~~~~~~p~HT~~sWRDR~RKfv~ 76 (105)
T PF09197_consen 1 KFTADDDYALCKAIKKQFYRDIYQKDPDTGSSLISDGDSKEFIPKRDMRSFFKDLARKNPRHTENSWRDRYRKFVS 76 (105)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHSB-TTSS-B----------------TTHHHHHHHHTTTS-HHHHHHHHHHTHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhhCcccccccccCCCccccccchhhHHHHHHHHHcCCccchhHHHHHHHHHHH
Confidence 599999999999998887542 22211111111 000 0 11236899999999999999999999988653
No 62
>smart00595 MADF subfamily of SANT domain.
Probab=62.86 E-value=5.8 Score=31.75 Aligned_cols=24 Identities=25% Similarity=0.710 Sum_probs=22.4
Q ss_pred CHhhHHhhhCCChHHHHHHhhhcc
Q 014781 232 DWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 232 ~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
.|..||..||-++.+|+.+|..+-
T Consensus 29 aW~~Ia~~l~~~~~~~~~kw~~LR 52 (89)
T smart00595 29 AWEEIAEELGLSVEECKKRWKNLR 52 (89)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHH
Confidence 799999999999999999999884
No 63
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=61.15 E-value=15 Score=26.26 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcc
Q 014781 217 EELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 217 EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
+++..++.++--.|-.+..||..||-|...|+.+..+.+
T Consensus 7 ~~er~vi~~~y~~~~t~~eIa~~lg~s~~~V~~~~~~al 45 (50)
T PF04545_consen 7 PREREVIRLRYFEGLTLEEIAERLGISRSTVRRILKRAL 45 (50)
T ss_dssp HHHHHHHHHHHTST-SHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHCCcHHHHHHHHHHHH
Confidence 445555555555567999999999999999988876654
No 64
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=61.00 E-value=11 Score=34.46 Aligned_cols=42 Identities=31% Similarity=0.470 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCHhhHHhhhC-CChHHHHHHhhhcc
Q 014781 213 KWTPEELELVRKFYEKHGSDWKTMADTLG-KHRFHVKDAWRRIK 255 (419)
Q Consensus 213 ~WT~EEDe~L~~lv~~~G~~W~~IA~~LG-Rs~~qcr~Rwr~~l 255 (419)
.||.|..+.|.+|. .-|..=..||..|| .|...|.-+-+++-
T Consensus 2 ~Wtde~~~~L~~lw-~~G~SasqIA~~lg~vsRnAViGk~hRlg 44 (162)
T PF07750_consen 2 SWTDERVERLRKLW-AEGLSASQIARQLGGVSRNAVIGKAHRLG 44 (162)
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHhCCcchhhhhhhhhccc
Confidence 59999999999998 45889999999998 99999998888763
No 65
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=60.48 E-value=8.4 Score=31.40 Aligned_cols=22 Identities=36% Similarity=0.794 Sum_probs=13.1
Q ss_pred CCCCCCCHHHHHHH--------HHHHHHhC
Q 014781 209 DENRKWTPEELELV--------RKFYEKHG 230 (419)
Q Consensus 209 ~~kg~WT~EEDe~L--------~~lv~~~G 230 (419)
+..|-||+|+|+.| .+|+.+||
T Consensus 45 n~~GiWT~eDD~~L~~~~~~~~~~L~~khG 74 (87)
T PF11626_consen 45 NMPGIWTPEDDEMLRSGDKDDIERLIKKHG 74 (87)
T ss_dssp T-TT---HHHHHHHTS--HHHHHHHHHHH-
T ss_pred CCCCCcCHHHHHHHHcCCHHHHHHHHHHhC
Confidence 67899999999999 34556665
No 66
>smart00595 MADF subfamily of SANT domain.
Probab=59.59 E-value=7.8 Score=31.00 Aligned_cols=24 Identities=29% Similarity=0.681 Sum_probs=21.8
Q ss_pred chhHhhhhcCCCCHHHHHHHHHHhc
Q 014781 300 SWEAISEKLSTRTNAICCMKWYDQL 324 (419)
Q Consensus 300 ~W~~IS~~m~~RS~~QCr~RW~~~L 324 (419)
-|..||..|+. |...|+.+|.++-
T Consensus 29 aW~~Ia~~l~~-~~~~~~~kw~~LR 52 (89)
T smart00595 29 AWEEIAEELGL-SVEECKKRWKNLR 52 (89)
T ss_pred HHHHHHHHHCc-CHHHHHHHHHHHH
Confidence 69999999987 9999999999764
No 67
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=56.68 E-value=25 Score=24.78 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHH
Q 014781 267 EEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYD 322 (419)
Q Consensus 267 EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~ 322 (419)
+=|.+|+.++. ..|. .+|..||+.+| =|...|..|+..
T Consensus 3 ~~D~~Il~~Lq-------------~d~r----~s~~~la~~lg-lS~~~v~~Ri~r 40 (42)
T PF13404_consen 3 ELDRKILRLLQ-------------EDGR----RSYAELAEELG-LSESTVRRRIRR 40 (42)
T ss_dssp HHHHHHHHHHH-------------H-TT----S-HHHHHHHHT-S-HHHHHHHHHH
T ss_pred HHHHHHHHHHH-------------HcCC----ccHHHHHHHHC-cCHHHHHHHHHH
Confidence 34677888887 3443 79999999998 688999998764
No 68
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=53.86 E-value=8.9 Score=39.78 Aligned_cols=44 Identities=14% Similarity=0.314 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHhhHHhh-----hC--CChHHHHHHhhhcc
Q 014781 212 RKWTPEELELVRKFYEKHGSDWKTMADT-----LG--KHRFHVKDAWRRIK 255 (419)
Q Consensus 212 g~WT~EEDe~L~~lv~~~G~~W~~IA~~-----LG--Rs~~qcr~Rwr~~l 255 (419)
..||.+|-+.|.+|+..|.-.|-.||.. ++ ||..+..+||..+.
T Consensus 131 n~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~ 181 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVC 181 (445)
T ss_pred ccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHH
Confidence 6799999999999999999999999987 43 99999999998764
No 69
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=52.28 E-value=1.2e+02 Score=25.29 Aligned_cols=79 Identities=13% Similarity=0.272 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccCcchhhhhHHHHHhhCCC-CCHHHHHHHHHHhhC-------CCC
Q 014781 139 KRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPW-RPCESIYYRAHILFE-------RDE 210 (419)
Q Consensus 139 g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP~-R~~~s~y~r~~~~~~-------~~~ 210 (419)
..||+++.-.|.+++..|...+|.+.. +....|...|...|.. =+..|++...+++-. ...
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~-----------~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky~~~~~k~~ 73 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQ-----------PDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKYRNAVKKSK 73 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCC-----------ccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHhhhcc
Confidence 469999888888999999998886421 1223466666666643 356677765544332 212
Q ss_pred CC---CCCHHHHHHHHHHHHH
Q 014781 211 NR---KWTPEELELVRKFYEK 228 (419)
Q Consensus 211 kg---~WT~EEDe~L~~lv~~ 228 (419)
.| .++..-|..+.+|...
T Consensus 74 ~g~~~~~~~~hd~~~f~Lsk~ 94 (98)
T PF04504_consen 74 NGKDPSFSKPHDRRLFELSKK 94 (98)
T ss_pred cCcCCCCCCHhHHHHHHHHHH
Confidence 23 6888888888887653
No 70
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=50.91 E-value=22 Score=39.77 Aligned_cols=47 Identities=21% Similarity=0.267 Sum_probs=41.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHhhHHhhh-CCChHHHHHHhhhcc
Q 014781 209 DENRKWTPEELELVRKFYEKHGSDWKTMADTL-GKHRFHVKDAWRRIK 255 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G~~W~~IA~~L-GRs~~qcr~Rwr~~l 255 (419)
+....||+-|-....+++-.|..++-.|+.+| ++|..||-..|+-..
T Consensus 617 ~gSd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtWK 664 (907)
T KOG4167|consen 617 AGSDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTWK 664 (907)
T ss_pred cCcccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHHH
Confidence 34578999999999999999999999999999 899999987776543
No 71
>cd07355 HN_L-delphilin-R2_like Second harmonin_N_like domain (repeat 2) of L-delphilin, and related domains. This subgroup contains the second of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin), and related domains. Delphilin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain in L-delphilin follows the second PDZ protein-binding domain, PDZ2; it is also found in the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta). It is a putative protein-binding module based on its sequence similarity to the harmonin N-domain. The first harmonin_N_like domain of L-delphilin belongs to a different subgroup and is missing from S-delphilin.
Probab=49.70 E-value=35 Score=27.62 Aligned_cols=61 Identities=23% Similarity=0.262 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCcchh-hhhhhccCcchhhhhHHHHHhhCCCCCHHHHHHHHH
Q 014781 141 FSLEEDEMIKKAVINYIEAHRLGEDGL-NMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAH 203 (419)
Q Consensus 141 wT~eEd~~L~~aV~~y~~~~~l~~e~l-~~l~~~~~~~e~~~~W~~IA~~LP~R~~~s~y~r~~ 203 (419)
+|+.|...+.++..+|-...++. .| ..+.---..|++...|..|.+.||.+....|-...-
T Consensus 16 Lt~~ER~~i~qaL~~y~~~Rnvd--~Li~~v~pVLDtPaK~~iw~~i~~llp~~eQ~~f~~k~~ 77 (80)
T cd07355 16 LTPPERYGIKKALEDYFQHRNID--TLIVDVYPVLDTPAKQVIWQYIYQLLPYEEQELCQEKIA 77 (80)
T ss_pred CCHHHHHHHHHHHHHHHHhccHH--HHHhhhhhhcCCHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 79999999999999998866653 21 111111235788899999999999877666655443
No 72
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=47.80 E-value=32 Score=30.65 Aligned_cols=44 Identities=0% Similarity=0.059 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcCCCC
Q 014781 267 EEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSPM 328 (419)
Q Consensus 267 EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~~~~ 328 (419)
+-|.+|+.+++ ..|. ++|..||+.+| -|...|+.|+..+.....
T Consensus 9 ~~D~~Il~~Lq-------------~d~R----~s~~eiA~~lg-lS~~tV~~Ri~rL~~~Gv 52 (153)
T PRK11179 9 NLDRGILEALM-------------ENAR----TPYAELAKQFG-VSPGTIHVRVEKMKQAGI 52 (153)
T ss_pred HHHHHHHHHHH-------------HcCC----CCHHHHHHHHC-cCHHHHHHHHHHHHHCCC
Confidence 56888888887 4454 79999999998 799999999998875443
No 73
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=45.50 E-value=22 Score=25.10 Aligned_cols=38 Identities=26% Similarity=0.476 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHH
Q 014781 212 RKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDA 250 (419)
Q Consensus 212 g~WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~R 250 (419)
..+|.+|-..|..++ .-|..-..||..|||++.-|..-
T Consensus 3 ~~Lt~~eR~~I~~l~-~~G~s~~~IA~~lg~s~sTV~re 40 (44)
T PF13936_consen 3 KHLTPEERNQIEALL-EQGMSIREIAKRLGRSRSTVSRE 40 (44)
T ss_dssp ---------HHHHHH-CS---HHHHHHHTT--HHHHHHH
T ss_pred cchhhhHHHHHHHHH-HcCCCHHHHHHHHCcCcHHHHHH
Confidence 457888888888875 36789999999999999887653
No 74
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=45.46 E-value=32 Score=35.86 Aligned_cols=53 Identities=13% Similarity=0.315 Sum_probs=44.1
Q ss_pred HHHHhcCCCCccCCCCChhchHHHHHHHHcCCCCCCCCCCcccccC---------CCCHHHHHHHHHHHHhhh
Q 014781 319 KWYDQLTSPMVAEGKWADTDDFHLVNALSGLDACCMDDVDWDNLLE---------HRSGTFCRKRWNQMVKHL 382 (419)
Q Consensus 319 RW~~~L~~~~v~kg~Wt~eED~~Ll~~i~~~g~~~e~~i~W~~I~~---------~Rs~~qcr~RW~~l~k~v 382 (419)
-|..+|++ ..|+.+|...|++....++ ..|--|++ .||-..++.||..+.+.+
T Consensus 123 EYe~~l~d-----n~WskeETD~LF~lck~fD------LRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l 184 (445)
T KOG2656|consen 123 EYEAHLND-----NSWSKEETDYLFDLCKRFD------LRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKL 184 (445)
T ss_pred HHHHhhcc-----ccccHHHHHHHHHHHHhcC------eeEEEEeeccchhhccccccHHHHHHHHHHHHHHH
Confidence 34555543 6899999999999999998 89988865 399999999999988766
No 75
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=45.15 E-value=54 Score=22.74 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhh
Q 014781 218 ELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRR 253 (419)
Q Consensus 218 EDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~ 253 (419)
|-+.|......++.+....|..||=++..++.+-..
T Consensus 6 E~~~i~~aL~~~~gn~~~aA~~Lgisr~tL~~klkk 41 (42)
T PF02954_consen 6 EKQLIRQALERCGGNVSKAARLLGISRRTLYRKLKK 41 (42)
T ss_dssp HHHHHHHHHHHTTT-HHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHh
Confidence 677888999999999999999999888877776543
No 76
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=43.01 E-value=46 Score=27.40 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhCC-CHhhHHhhhCCChHHHHHHhhhcccC
Q 014781 217 EELELVRKFYEKHGS-DWKTMADTLGKHRFHVKDAWRRIKLP 257 (419)
Q Consensus 217 EEDe~L~~lv~~~G~-~W~~IA~~LGRs~~qcr~Rwr~~l~~ 257 (419)
+.|..|+.+....|. .+..||..+|-++..|+.+...+...
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l~~s~~tv~~~l~~L~~~ 44 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKVGLSPSTVHNRVKRLEEE 44 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 467788888888875 99999999999999999999988653
No 77
>TIGR02985 Sig70_bacteroi1 RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.
Probab=42.94 E-value=35 Score=29.45 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcc
Q 014781 218 ELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 218 EDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
++..++.+.--.|-.+.+||..||.|+..|+.+..+..
T Consensus 117 ~~r~il~l~~~~~~~~~eIA~~lgis~~tv~~~~~ra~ 154 (161)
T TIGR02985 117 QCRKIFILSRFEGKSYKEIAEELGISVKTVEYHISKAL 154 (161)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444444444578999999999999999999888764
No 78
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=42.67 E-value=38 Score=30.59 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcCCCC
Q 014781 266 QEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSPM 328 (419)
Q Consensus 266 ~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~~~~ 328 (419)
.+-|.+|+.+++ ..|. ++|..||+.+| =|+..|+.|+..+.....
T Consensus 13 D~~D~~IL~~Lq-------------~d~R----~s~~eiA~~lg-lS~~tv~~Ri~rL~~~Gv 57 (164)
T PRK11169 13 DRIDRNILNELQ-------------KDGR----ISNVELSKRVG-LSPTPCLERVRRLERQGF 57 (164)
T ss_pred HHHHHHHHHHhc-------------cCCC----CCHHHHHHHHC-cCHHHHHHHHHHHHHCCC
Confidence 456888888887 5554 79999999998 799999999998875443
No 79
>cd08319 Death_RAIDD Death domain of RIP-associated ICH-1 homologous protein with a death domain. Death domain (DD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal Caspase Activation and Recruitment Domain (CARD), which interacts with the caspase-2 CARD, and a C-terminal DD, which interacts with the DD of PIDD. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD, DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other pr
Probab=41.06 E-value=34 Score=27.82 Aligned_cols=30 Identities=13% Similarity=0.335 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCCHhhHHhhhCCChHHHH
Q 014781 219 LELVRKFYEKHGSDWKTMADTLGKHRFHVK 248 (419)
Q Consensus 219 De~L~~lv~~~G~~W~~IA~~LGRs~~qcr 248 (419)
|+.|..+...-|.+|..+|..||=|..++.
T Consensus 2 ~~~L~~la~~LG~~W~~Lar~Lgls~~~I~ 31 (83)
T cd08319 2 DRELNQLAQRLGPEWEQVLLDLGLSQTDIY 31 (83)
T ss_pred HHHHHHHHHHHhhhHHHHHHHcCCCHHHHH
Confidence 578899999999999999999996655543
No 80
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=40.60 E-value=43 Score=30.48 Aligned_cols=45 Identities=27% Similarity=0.462 Sum_probs=36.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHhhHHhhh--C---CChHHHHHHhhhc
Q 014781 210 ENRKWTPEELELVRKFYEKHGSDWKTMADTL--G---KHRFHVKDAWRRI 254 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G~~W~~IA~~L--G---Rs~~qcr~Rwr~~ 254 (419)
....=|+.|...|..|+.+||.++..+|.-. + .|+.||+.+...+
T Consensus 113 ~~~~ls~~e~~~i~~Li~KhGdDy~aMarD~KLN~~Q~T~~qlrrki~~~ 162 (164)
T PF09420_consen 113 KPRRLSEREIEYIEYLIEKHGDDYKAMARDRKLNYMQHTPGQLRRKIRKY 162 (164)
T ss_pred CCCCCCHHHHHHHHHHHHHHCccHHHHhccCCCCcccCCHHHHHHHHHHh
Confidence 3466789999999999999999999988544 2 7888888777655
No 81
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=40.50 E-value=20 Score=27.76 Aligned_cols=24 Identities=25% Similarity=0.648 Sum_probs=21.3
Q ss_pred CHhhHHhhhC--CChHHHHHHhhhcc
Q 014781 232 DWKTMADTLG--KHRFHVKDAWRRIK 255 (419)
Q Consensus 232 ~W~~IA~~LG--Rs~~qcr~Rwr~~l 255 (419)
.|..||..|| -++.+|+.+|..+.
T Consensus 28 aw~~Ia~~l~~~~~~~~~~~~w~~Lr 53 (85)
T PF10545_consen 28 AWQEIARELGKEFSVDDCKKRWKNLR 53 (85)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHHH
Confidence 7999999997 68899999999874
No 82
>TIGR00673 cynS cyanate hydratase. Alternate names include cyanate lyase, cyanase and cyanate hydrolase.
Probab=37.69 E-value=1.3e+02 Score=27.37 Aligned_cols=51 Identities=20% Similarity=0.205 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHH
Q 014781 220 ELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVN 277 (419)
Q Consensus 220 e~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l~~~~~kg~WT~EED~~L~~lV~ 277 (419)
+.|+.+-...|-.|..||+.+|+|..-|..-... ...-++|+-.+|.+++.
T Consensus 11 ~~Ll~AK~~KGLTwe~IAe~iG~sevwvaaa~lG-------Q~~ls~e~A~kla~lLg 61 (150)
T TIGR00673 11 DALLESKKKKGLTFADIADGLGLAEVFVAAALYG-------QAAAPADEARLVGAKLD 61 (150)
T ss_pred HHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHhC-------CCCCCHHHHHHHHHHhC
Confidence 5677777788999999999999998877654332 33558888888888774
No 83
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=36.74 E-value=48 Score=28.93 Aligned_cols=41 Identities=10% Similarity=0.135 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhCC-CHhhHHhhhCCChHHHHHHhhhcccC
Q 014781 217 EELELVRKFYEKHGS-DWKTMADTLGKHRFHVKDAWRRIKLP 257 (419)
Q Consensus 217 EEDe~L~~lv~~~G~-~W~~IA~~LGRs~~qcr~Rwr~~l~~ 257 (419)
+-|.+|+.+....+. .+..||+.+|-|+..|..|-+++...
T Consensus 8 ~~D~~IL~~L~~d~r~~~~eia~~lglS~~~v~~Ri~~L~~~ 49 (154)
T COG1522 8 DIDRRILRLLQEDARISNAELAERVGLSPSTVLRRIKRLEEE 49 (154)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 457778888777775 99999999999999999999988653
No 84
>PF07638 Sigma70_ECF: ECF sigma factor
Probab=36.24 E-value=51 Score=30.24 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=24.1
Q ss_pred HhCCCHhhHHhhhCCChHHHHHHhhhc
Q 014781 228 KHGSDWKTMADTLGKHRFHVKDAWRRI 254 (419)
Q Consensus 228 ~~G~~W~~IA~~LGRs~~qcr~Rwr~~ 254 (419)
-.|-.+.+||..||-|+..|+.+|+..
T Consensus 149 ~~Gls~~EIA~~lgiS~~tV~r~l~~a 175 (185)
T PF07638_consen 149 FEGLSVEEIAERLGISERTVRRRLRRA 175 (185)
T ss_pred HCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 347799999999999999999999876
No 85
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=35.59 E-value=59 Score=36.57 Aligned_cols=41 Identities=10% Similarity=0.095 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccCcchhhhhHHHHHhhCCCCCHHHHHHHHH
Q 014781 140 RFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAH 203 (419)
Q Consensus 140 ~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP~R~~~s~y~r~~ 203 (419)
.||+.|..+..+|+-.|-+ ++..|+..|++.+..+|-.+|+
T Consensus 621 ~WTp~E~~lF~kA~y~~~K-----------------------DF~~v~km~~~KtVaqCVeyYY 661 (907)
T KOG4167|consen 621 KWTPLERKLFNKALYTYSK-----------------------DFIFVQKMVKSKTVAQCVEYYY 661 (907)
T ss_pred cccHHHHHHHHHHHHHhcc-----------------------cHHHHHHHhccccHHHHHHHHH
Confidence 6999999999999877743 6778999999999999977664
No 86
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=35.05 E-value=49 Score=27.67 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=31.8
Q ss_pred CCCChhchHHHHHHHHcCCCCC--CCCCCcccc--------cCCCCHHHHHHHHHHHHhhh
Q 014781 332 GKWADTDDFHLVNALSGLDACC--MDDVDWDNL--------LEHRSGTFCRKRWNQMVKHL 382 (419)
Q Consensus 332 g~Wt~eED~~Ll~~i~~~g~~~--e~~i~W~~I--------~~~Rs~~qcr~RW~~l~k~v 382 (419)
..||.+|+..||+++..+-+.. ....+|..+ ...-+..|+..+-++|++.+
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~Ky 65 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKKY 65 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHH
Confidence 3599999999999998762211 111255543 12356677776666666544
No 87
>cd08803 Death_ank3 Death domain of Ankyrin-3. Death Domain (DD) of the human protein ankyrin-3 (ANK-3) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-3, also called anykyrin-G (for general or giant), is found in neurons and at least one splice variant has been shown to be essential for propagation of action potentials as a binding partner to neurofascin and voltage-gated sodium channels. It is required for maintaining axo-dendritic polarity, and may be a genetic risk factor associated with bipolar disorder. ANK-3 may also play roles in other cell types. Mutations affecting ANK-3 pathways for Na channel localization are associated with Brugada syndrome, a potentially fata arrythmia. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by se
Probab=34.47 E-value=54 Score=26.70 Aligned_cols=30 Identities=13% Similarity=0.135 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhCCCHhhHHhhhCCChHHHH
Q 014781 219 LELVRKFYEKHGSDWKTMADTLGKHRFHVK 248 (419)
Q Consensus 219 De~L~~lv~~~G~~W~~IA~~LGRs~~qcr 248 (419)
|..|..+...-|.+|..+|..||=+..++.
T Consensus 4 d~~l~~ia~~LG~dW~~LA~eLg~s~~dI~ 33 (84)
T cd08803 4 DIRMAIVADHLGLSWTELARELNFSVDEIN 33 (84)
T ss_pred HHHHHHHHHHhhccHHHHHHHcCCCHHHHH
Confidence 567788888889999999999996665543
No 88
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=34.43 E-value=31 Score=26.65 Aligned_cols=25 Identities=20% Similarity=0.541 Sum_probs=21.5
Q ss_pred chhHhhhhcC-CCCHHHHHHHHHHhc
Q 014781 300 SWEAISEKLS-TRTNAICCMKWYDQL 324 (419)
Q Consensus 300 ~W~~IS~~m~-~RS~~QCr~RW~~~L 324 (419)
-|..||..|+ .-+..+|+.+|.++-
T Consensus 28 aw~~Ia~~l~~~~~~~~~~~~w~~Lr 53 (85)
T PF10545_consen 28 AWQEIARELGKEFSVDDCKKRWKNLR 53 (85)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHHH
Confidence 5999999998 457889999999865
No 89
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=33.35 E-value=53 Score=30.05 Aligned_cols=41 Identities=22% Similarity=0.290 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHH
Q 014781 263 QWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYD 322 (419)
Q Consensus 263 ~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~ 322 (419)
.||.|..+.|.++-. .| .+=.+||..||+.|.+.+.-+-+.
T Consensus 2 ~Wtde~~~~L~~lw~--------------~G-----~SasqIA~~lg~vsRnAViGk~hR 42 (162)
T PF07750_consen 2 SWTDERVERLRKLWA--------------EG-----LSASQIARQLGGVSRNAVIGKAHR 42 (162)
T ss_pred CCCHHHHHHHHHHHH--------------cC-----CCHHHHHHHhCCcchhhhhhhhhc
Confidence 699999999999986 34 478999999997777777666554
No 90
>cd07178 terB_like_YebE tellurium resistance terB-like protein, subgroup 3. This family includes several uncharacterized bacterial proteins including an Escherichia coli protein called YebE. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=31.18 E-value=3e+02 Score=22.66 Aligned_cols=79 Identities=18% Similarity=0.054 Sum_probs=47.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCcch---hhhhhhccCcchhhhhHHHHHhhCCCCCHHHHHHHHHHhhCCCCCCCC
Q 014781 138 GKRFSLEEDEMIKKAVINYIEAHRLGEDG---LNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFERDENRKW 214 (419)
Q Consensus 138 ~g~wT~eEd~~L~~aV~~y~~~~~l~~e~---l~~l~~~~~~~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~~~~~kg~W 214 (419)
.|.++++|.+.|...+.+.+ ++.+. +...+.... .=..|+..+++.......+.+..+.- +..
T Consensus 13 DG~id~~E~~~I~~~~~~~~----~~~~~~~~~~~~l~~p~------~~~~la~~~~~~~~a~~~y~~s~~~~----d~~ 78 (95)
T cd07178 13 DGHIDEAERARILGELGEAG----LDAEERAFLEAELAAPL------DPDALAAAVPDPELAAEVYAASLLAI----DPD 78 (95)
T ss_pred cCCCCHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHCCC------CHHHHHHHcCCHHHHHHHHHHHHHHH----cCC
Confidence 48899999999999877653 22211 112222111 12278888876433333334444433 467
Q ss_pred CHHHHHHHHHHHHHhC
Q 014781 215 TPEELELVRKFYEKHG 230 (419)
Q Consensus 215 T~EEDe~L~~lv~~~G 230 (419)
|+.|.+.|.++....|
T Consensus 79 s~aE~~~L~~la~aLg 94 (95)
T cd07178 79 TFAERAYLDELAAALG 94 (95)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999887655
No 91
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=30.76 E-value=79 Score=25.41 Aligned_cols=25 Identities=20% Similarity=0.515 Sum_probs=18.4
Q ss_pred CHhhHHhhhCC------ChHHHHHHhhhccc
Q 014781 232 DWKTMADTLGK------HRFHVKDAWRRIKL 256 (419)
Q Consensus 232 ~W~~IA~~LGR------s~~qcr~Rwr~~l~ 256 (419)
.|..||..||= ++.+++..|.++|.
T Consensus 59 ~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~ 89 (92)
T PF01388_consen 59 KWREVARKLGFPPSSTSAAQQLRQHYEKYLL 89 (92)
T ss_dssp THHHHHHHTTS-TTSCHHHHHHHHHHHHHTH
T ss_pred hHHHHHHHhCCCCCCCcHHHHHHHHHHHHhH
Confidence 69999999972 13567777777763
No 92
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=30.74 E-value=1.7e+02 Score=23.75 Aligned_cols=91 Identities=16% Similarity=0.121 Sum_probs=50.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccC----cchhhhhHHHHHhhCCCCCHHHHHHHHHHhhCCCCCCC
Q 014781 138 GKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRS----YPEIKHCWKEIGAALPWRPCESIYYRAHILFERDENRK 213 (419)
Q Consensus 138 ~g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~----~~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~~~~~kg~ 213 (419)
-|..+.+|.+.|.+.+.......+.+...+..++.... ......+-..++..++......++.-...+- ...|.
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia--~aDG~ 93 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALLRPEGLAALLKAAAKLLPPELRETAFAVAVDIA--AADGE 93 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HccCC
Confidence 47889999999999887433222333334444443221 1222333444555554111222222222222 35589
Q ss_pred CCHHHHHHHHHHHHHhC
Q 014781 214 WTPEELELVRKFYEKHG 230 (419)
Q Consensus 214 WT~EEDe~L~~lv~~~G 230 (419)
-++.|...|.++....|
T Consensus 94 ~~~~E~~~L~~l~~~Lg 110 (111)
T cd07176 94 VDPEERAVLEKLYRALG 110 (111)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887655
No 93
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=30.18 E-value=55 Score=26.56 Aligned_cols=26 Identities=27% Similarity=0.371 Sum_probs=13.8
Q ss_pred ccCCCCCHHHHHHH----HHHHHHHHHHcC
Q 014781 136 IRGKRFSLEEDEMI----KKAVINYIEAHR 161 (419)
Q Consensus 136 ~k~g~wT~eEd~~L----~~aV~~y~~~~~ 161 (419)
...|-||+++|+.| ...+.+..+.||
T Consensus 45 n~~GiWT~eDD~~L~~~~~~~~~~L~~khG 74 (87)
T PF11626_consen 45 NMPGIWTPEDDEMLRSGDKDDIERLIKKHG 74 (87)
T ss_dssp T-TT---HHHHHHHTS--HHHHHHHHHHH-
T ss_pred CCCCCcCHHHHHHHHcCCHHHHHHHHHHhC
Confidence 34688999999999 444444444443
No 94
>PF11198 DUF2857: Protein of unknown function (DUF2857); InterPro: IPR021364 This is a bacterial family of uncharacterised proteins.
Probab=28.49 E-value=2.5e+02 Score=26.00 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcccCCCCCC---CCCHHHHHHHHHHHH
Q 014781 217 EELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKLPNQKKG---QWSQEEYQKLFALVN 277 (419)
Q Consensus 217 EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l~~~~~kg---~WT~EED~~L~~lV~ 277 (419)
++...+++-.-.+|.....+..++|-|+..|..| |+++.-....| .=|+|++..|...-.
T Consensus 74 ~~~~~~idr~L~lGAS~~mm~~~FGls~~ev~~r-R~llgi~~~~GR~~~~~ee~~~~iW~~W~ 136 (180)
T PF11198_consen 74 QQEQQLIDRALRLGASIEMMQRLFGLSSAEVAAR-RRLLGIPVRKGRPPALSEEEEAAIWRRWQ 136 (180)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHH-HHHhCCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 5567777777889999999999999999999876 55654333444 456777777777765
No 95
>PRK01905 DNA-binding protein Fis; Provisional
Probab=28.42 E-value=2.2e+02 Score=22.38 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhc
Q 014781 216 PEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRI 254 (419)
Q Consensus 216 ~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~ 254 (419)
.-|...+..++..+|.++...|..||=++..++.+.+++
T Consensus 36 ~~E~~~i~~aL~~~~gn~s~aAr~LGIsrstL~rklkk~ 74 (77)
T PRK01905 36 CVEKPLLEVVMEQAGGNQSLAAEYLGINRNTLRKKLQQH 74 (77)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHh
Confidence 346778899999999999999999997777777665543
No 96
>PRK02866 cyanate hydratase; Validated
Probab=28.32 E-value=1.8e+02 Score=26.37 Aligned_cols=51 Identities=22% Similarity=0.319 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHH
Q 014781 220 ELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVN 277 (419)
Q Consensus 220 e~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l~~~~~kg~WT~EED~~L~~lV~ 277 (419)
+.|+.+-...|-.|..||+.+|+|..-|..-.. ....-+.++-++|.+++.
T Consensus 8 e~Ll~AK~~kGLTw~~IA~~iG~S~v~vaaa~l-------GQ~~ls~e~A~kla~~Lg 58 (147)
T PRK02866 8 EKILAAKKEKGLTWADIAEAIGLSEVWVTAALL-------GQMTLPAEEAEKVAELLG 58 (147)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHh-------CCCCCCHHHHHHHHHHhC
Confidence 457777788899999999999999987776533 234668888888888774
No 97
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=28.19 E-value=62 Score=35.59 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=42.0
Q ss_pred hCCCCCCCCCHHHHHHHHHHHHHhCCCHhhHHhhh-C----------CChHHHHHHhhhccc
Q 014781 206 FERDENRKWTPEELELVRKFYEKHGSDWKTMADTL-G----------KHRFHVKDAWRRIKL 256 (419)
Q Consensus 206 ~~~~~kg~WT~EEDe~L~~lv~~~G~~W~~IA~~L-G----------Rs~~qcr~Rwr~~l~ 256 (419)
+.-..+..||-.|.+-......+||.++..|-.++ - .|-.|++.+|++.+.
T Consensus 83 Lkt~~ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~ 144 (782)
T KOG4468|consen 83 LKTWAKTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVR 144 (782)
T ss_pred cccccccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHH
Confidence 44446889999999999999999999999995544 2 578899999998764
No 98
>COG2963 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=27.91 E-value=1.2e+02 Score=25.32 Aligned_cols=64 Identities=20% Similarity=0.230 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcccCC-----C---CCCCCCHHHHHHHHH
Q 014781 211 NRKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKLPN-----Q---KKGQWSQEEYQKLFA 274 (419)
Q Consensus 211 kg~WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l~~~-----~---~kg~WT~EED~~L~~ 274 (419)
+.+||+|.-..+.+++..-|..=+.||..+|-...+...+|+..+... . ....=+++|-..|..
T Consensus 5 ~r~~s~EfK~~iv~~~~~~g~sv~~vAr~~gv~~~~~l~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (116)
T COG2963 5 RKKYSPEFKLEAVALYLRGGDTVSEVAREFGIVSATQLYKWRIQLQKGGGLAFSGKGKTVSYDAEEILRLRK 76 (116)
T ss_pred cccCCHHHHHHHHHHHHhcCccHHHHHHHhCCCChHHHHHHHHHHHHcccccccCccccCCcCHHHHHHHHH
Confidence 578999999999999999999999999999974444444555543211 1 122445666666644
No 99
>TIGR02531 yecD_yerC TrpR-related protein YerC/YecD. This model represents a protein subfamily found mostly in the Firmicutes (Bacillus and allies). This family is similar in sequence to the trp operon repressor TrpR described by TIGR01321, and represents a distinct clade within the broader family described by pfam01371. At least one species, Xylella fastidiosa, in the Proteobacteria, has a member of both this family and TIGR01321. Several genomes with a member of this family do not synthesize tryptophan, and members of this family should not be considered trp operon repressors without new evidence.
Probab=27.77 E-value=1.5e+02 Score=24.35 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=45.8
Q ss_pred hHHHHHhhC-CCCCHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhc
Q 014781 182 CWKEIGAAL-PWRPCESIYYRAHILFERDENRKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRI 254 (419)
Q Consensus 182 ~W~~IA~~L-P~R~~~s~y~r~~~~~~~~~kg~WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~ 254 (419)
.|..+...| ..-++..|+..+.-++.|.-...-|+- ..+..++ .-|.....||..+|.|..-|.. +.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~l~t~~e~~~Ls~R--~~I~~ll-~~G~S~~eIA~~LgISrsTIyR-i~R~ 73 (88)
T TIGR02531 4 LLDELFDAILTLKNREECYRFFDDIATINEIQSLAQR--LQVAKML-KQGKTYSDIEAETGASTATISR-VKRC 73 (88)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHhhhHH--HHHHHHH-HCCCCHHHHHHHHCcCHHHHHH-HHHh
Confidence 466666554 457788999888877665322334444 3333332 3477999999999999999977 5553
No 100
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=26.91 E-value=57 Score=26.16 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCCCHhhHHhhhCCChHHH
Q 014781 219 LELVRKFYEKHGSDWKTMADTLGKHRFHV 247 (419)
Q Consensus 219 De~L~~lv~~~G~~W~~IA~~LGRs~~qc 247 (419)
|..|..+...-|.+|..+|..||=+..++
T Consensus 4 ~~~l~~ia~~lG~dW~~LAr~Lg~~~~dI 32 (84)
T cd08317 4 DIRLADISNLLGSDWPQLARELGVSETDI 32 (84)
T ss_pred cchHHHHHHHHhhHHHHHHHHcCCCHHHH
Confidence 45677788888999999999998554443
No 101
>cd00569 HTH_Hin_like Helix-turn-helix domain of Hin and related proteins, a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a D
Probab=26.41 E-value=1.5e+02 Score=17.63 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHH
Q 014781 212 RKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVK 248 (419)
Q Consensus 212 g~WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr 248 (419)
...+.++-..+..++. .|..+..||..+|.+...+.
T Consensus 4 ~~~~~~~~~~i~~~~~-~~~s~~~ia~~~~is~~tv~ 39 (42)
T cd00569 4 PKLTPEQIEEARRLLA-AGESVAEIARRLGVSRSTLY 39 (42)
T ss_pred CcCCHHHHHHHHHHHH-cCCCHHHHHHHHCCCHHHHH
Confidence 4456655555555543 46689999999998776664
No 102
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=26.36 E-value=1.9e+02 Score=22.27 Aligned_cols=44 Identities=18% Similarity=0.226 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHcCCCcchhhhhhhccCcchhhhhHHHHHhhCCCCCHHHHHHHHHHhhC
Q 014781 147 EMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFE 207 (419)
Q Consensus 147 ~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~~ 207 (419)
..+..+|..|...+|... --.+||..|.-++..+|..+...+-.
T Consensus 9 ~~vL~~I~~~~~~~G~~P-----------------t~rEIa~~~g~~S~~tv~~~L~~Le~ 52 (65)
T PF01726_consen 9 KEVLEFIREYIEENGYPP-----------------TVREIAEALGLKSTSTVQRHLKALER 52 (65)
T ss_dssp HHHHHHHHHHHHHHSS--------------------HHHHHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCC-----------------CHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 345678888988888863 36789999988899999999876653
No 103
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=26.31 E-value=75 Score=25.80 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=18.8
Q ss_pred CCHhhHHhhhCCC------hHHHHHHhhhccc
Q 014781 231 SDWKTMADTLGKH------RFHVKDAWRRIKL 256 (419)
Q Consensus 231 ~~W~~IA~~LGRs------~~qcr~Rwr~~l~ 256 (419)
..|..||..||-. ..+++..|.++|.
T Consensus 54 ~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~ 85 (93)
T smart00501 54 KKWKEIARELGIPDTSTSAASSLRKHYERYLL 85 (93)
T ss_pred CCHHHHHHHhCCCcccchHHHHHHHHHHHHhH
Confidence 4899999999743 4566777776653
No 104
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=26.24 E-value=1.2e+02 Score=20.36 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhc
Q 014781 214 WTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRI 254 (419)
Q Consensus 214 WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~ 254 (419)
.++++-..+ .++-..|..+..||..||-+...|..+....
T Consensus 11 l~~~~~~~~-~~~~~~~~~~~~ia~~~~~s~~~i~~~~~~~ 50 (55)
T cd06171 11 LPEREREVI-LLRFGEGLSYEEIAEILGISRSTVRQRLHRA 50 (55)
T ss_pred CCHHHHHHH-HHHHhcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 455544444 4444467799999999998888887665543
No 105
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=24.60 E-value=2.9e+02 Score=27.04 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=36.3
Q ss_pred HhCCCHhhHHhhhCCChHHHHHHhhhccc---CCCCCCCCCHHHHHHHHHHHHHH
Q 014781 228 KHGSDWKTMADTLGKHRFHVKDAWRRIKL---PNQKKGQWSQEEYQKLFALVNMD 279 (419)
Q Consensus 228 ~~G~~W~~IA~~LGRs~~qcr~Rwr~~l~---~~~~kg~WT~EED~~L~~lV~~~ 279 (419)
-+|-.-.+||..||.|...|+.+..+... .......-..++...|+......
T Consensus 122 ~~g~s~~EIA~~lg~s~~tVr~~l~RAr~~Lr~~~~~~~~~~~~~~~~~~~f~~a 176 (281)
T TIGR02957 122 VFDYPYEEIASIVGKSEANCRQLVSRARRHLDARRPRFEVSREESRQLLERFVEA 176 (281)
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHH
Confidence 34679999999999999999988776642 22222346667777776666543
No 106
>PRK04217 hypothetical protein; Provisional
Probab=24.27 E-value=1.2e+02 Score=26.01 Aligned_cols=44 Identities=18% Similarity=0.058 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcc
Q 014781 211 NRKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 211 kg~WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
-..-|++| ..++.++...|-....||+.||-|...|+.++.+..
T Consensus 40 ~~~Lt~ee-reai~l~~~eGlS~~EIAk~LGIS~sTV~r~L~RAr 83 (110)
T PRK04217 40 PIFMTYEE-FEALRLVDYEGLTQEEAGKRMGVSRGTVWRALTSAR 83 (110)
T ss_pred cccCCHHH-HHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45567777 566677777788999999999999999999988753
No 107
>TIGR02937 sigma70-ECF RNA polymerase sigma factor, sigma-70 family. Several PFAM models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.
Probab=24.08 E-value=99 Score=25.76 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcc
Q 014781 214 WTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 214 WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
.++.+-..| .++-..|-.+..||..+|-|+..++.+..+.+
T Consensus 111 L~~~~~~ii-~~~~~~g~s~~eIA~~l~~s~~~v~~~~~~~~ 151 (158)
T TIGR02937 111 LPEREREVL-VLRYLEGLSYKEIAEILGISVGTVKRRLKRAR 151 (158)
T ss_pred CCHHHHHHH-hhHHhcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444443 33333578999999999999999998877654
No 108
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.08 E-value=3.5e+02 Score=23.99 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcC-CCcchhhhhhhccCcchhhhhHHHHHhhCCCCCHHHHHHHHHHhhCC------CCC
Q 014781 139 KRFSLEEDEMIKKAVINYIEAHR-LGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFER------DEN 211 (419)
Q Consensus 139 g~wT~eEd~~L~~aV~~y~~~~~-l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~~~------~~k 211 (419)
.+||++|.+.|...|..+...|| +|..++..+. +=+..+|..+++.+... +.-
T Consensus 3 ~~~T~eer~eLk~rIvElVRe~GRiTi~ql~~~T--------------------GasR~Tvk~~lreLVa~G~l~~~G~~ 62 (127)
T PF06163_consen 3 RVFTPEEREELKARIVELVREHGRITIKQLVAKT--------------------GASRNTVKRYLRELVARGDLYRHGRS 62 (127)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCccHHHHHHHH--------------------CCCHHHHHHHHHHHHHcCCeEeCCCc
Confidence 57999999999999999999885 3444333322 34566777777666543 344
Q ss_pred CCCCHHHHHH
Q 014781 212 RKWTPEELEL 221 (419)
Q Consensus 212 g~WT~EEDe~ 221 (419)
|-|+.|..-+
T Consensus 63 GvF~seqA~~ 72 (127)
T PF06163_consen 63 GVFPSEQARK 72 (127)
T ss_pred cccccHHHHH
Confidence 7788776654
No 109
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=23.97 E-value=4.5e+02 Score=22.33 Aligned_cols=47 Identities=17% Similarity=0.173 Sum_probs=38.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcc
Q 014781 208 RDENRKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 208 ~~~kg~WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
+..+..||.|+-..+...+...|..=..||..+|=++..+ .+|++..
T Consensus 7 ~~~rr~ys~EfK~~aV~~~~~~g~sv~evA~e~gIs~~tl-~~W~r~y 53 (121)
T PRK09413 7 PEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQL-FLWRKQY 53 (121)
T ss_pred CCCCCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHH-HHHHHHH
Confidence 4566889999999999988888989999999999855554 5677664
No 110
>PRK09641 RNA polymerase sigma factor SigW; Provisional
Probab=23.27 E-value=1.1e+02 Score=27.31 Aligned_cols=32 Identities=16% Similarity=0.018 Sum_probs=25.1
Q ss_pred HHHHHhCCCHhhHHhhhCCChHHHHHHhhhcc
Q 014781 224 KFYEKHGSDWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 224 ~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
.+.--.|..+.+||..||-|...|+.+..+..
T Consensus 146 ~l~~~~~~s~~eIA~~lgis~~~v~~~l~Rar 177 (187)
T PRK09641 146 VLKYIEDLSLKEISEILDLPVGTVKTRIHRGR 177 (187)
T ss_pred hhHHhhCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334577999999999999999998877653
No 111
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=22.96 E-value=96 Score=25.09 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCHhhHHhhhCCChHHHHH
Q 014781 219 LELVRKFYEKHGSDWKTMADTLGKHRFHVKD 249 (419)
Q Consensus 219 De~L~~lv~~~G~~W~~IA~~LGRs~~qcr~ 249 (419)
+..|..+....|.+|..+|..||=+..++..
T Consensus 4 ~~~l~~ia~~LG~dWk~LAr~Lg~se~dI~~ 34 (84)
T cd08804 4 EERLAVIADHLGFSWTELARELDFTEEQIHQ 34 (84)
T ss_pred hhHHHHHHHHHhhhHHHHHHHcCCCHHHHHH
Confidence 4567778888899999999999966665543
No 112
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=22.93 E-value=1.2e+02 Score=22.99 Aligned_cols=45 Identities=20% Similarity=0.294 Sum_probs=33.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcc
Q 014781 210 ENRKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
.+..||+|+-..++..+...|..-..||..+|=++. ...+|..-.
T Consensus 3 ~r~~ys~e~K~~~v~~~~~~g~sv~~va~~~gi~~~-~l~~W~~~~ 47 (76)
T PF01527_consen 3 KRRRYSPEFKLQAVREYLESGESVSEVAREYGISPS-TLYNWRKQY 47 (76)
T ss_dssp SS----HHHHHHHHHHHHHHHCHHHHHHHHHTS-HH-HHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCceEeeecccccccc-cccHHHHHH
Confidence 457899999999999998889999999999998554 455677665
No 113
>PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C.
Probab=22.29 E-value=1.2e+02 Score=21.28 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCCHhhHHhhhCCChHHHHH
Q 014781 219 LELVRKFYEKHGSDWKTMADTLGKHRFHVKD 249 (419)
Q Consensus 219 De~L~~lv~~~G~~W~~IA~~LGRs~~qcr~ 249 (419)
-..++.++.. |.....||..||-|...|+.
T Consensus 7 R~~ii~l~~~-G~s~~~ia~~lgvs~~Tv~~ 36 (50)
T PF13384_consen 7 RAQIIRLLRE-GWSIREIAKRLGVSRSTVYR 36 (50)
T ss_dssp ---HHHHHHH-T--HHHHHHHHTS-HHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHCcCHHHHHH
Confidence 3445556666 99999999999977766653
No 114
>PRK09652 RNA polymerase sigma factor RpoE; Provisional
Probab=22.17 E-value=1.2e+02 Score=26.71 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=24.3
Q ss_pred HHHHhCCCHhhHHhhhCCChHHHHHHhhhcc
Q 014781 225 FYEKHGSDWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 225 lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
+.-..|-.+..||..||-|...|..+..+.+
T Consensus 139 l~~~~~~s~~eIA~~lgis~~tV~~~l~ra~ 169 (182)
T PRK09652 139 LREIEGLSYEEIAEIMGCPIGTVRSRIFRAR 169 (182)
T ss_pred HHHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334577999999999999999988776653
No 115
>PRK11924 RNA polymerase sigma factor; Provisional
Probab=21.83 E-value=1.2e+02 Score=26.48 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=23.0
Q ss_pred hCCCHhhHHhhhCCChHHHHHHhhhcc
Q 014781 229 HGSDWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 229 ~G~~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
.|-.+..||..||-|+..|+.+..+..
T Consensus 140 ~~~~~~eIA~~lgis~~tv~~~~~ra~ 166 (179)
T PRK11924 140 EGLSYREIAEILGVPVGTVKSRLRRAR 166 (179)
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467999999999999999998877654
No 116
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=21.53 E-value=1.1e+02 Score=24.74 Aligned_cols=26 Identities=35% Similarity=0.592 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCHhhHHhhhCCChHHH
Q 014781 222 VRKFYEKHGSDWKTMADTLGKHRFHV 247 (419)
Q Consensus 222 L~~lv~~~G~~W~~IA~~LGRs~~qc 247 (419)
|..+...-|.+|..+|..||=+..++
T Consensus 10 l~~ia~~iG~~Wk~Lar~LGls~~dI 35 (86)
T cd08318 10 ITVFANKLGEDWKTLAPHLEMKDKEI 35 (86)
T ss_pred HHHHHHHHhhhHHHHHHHcCCCHHHH
Confidence 33355667999999999999777766
No 117
>PRK09643 RNA polymerase sigma factor SigM; Reviewed
Probab=21.50 E-value=1.3e+02 Score=27.44 Aligned_cols=27 Identities=26% Similarity=0.187 Sum_probs=23.2
Q ss_pred hCCCHhhHHhhhCCChHHHHHHhhhcc
Q 014781 229 HGSDWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 229 ~G~~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
+|-...+||..||-|...|+.|..+..
T Consensus 149 ~g~s~~EIA~~lg~s~~tV~~rl~rar 175 (192)
T PRK09643 149 QGYSVADAARMLGVAEGTVKSRCARGR 175 (192)
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 477999999999999999999887654
No 118
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=20.82 E-value=2.4e+02 Score=27.98 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=35.3
Q ss_pred HhCCCHhhHHhhhCCChHHHHHHhhhccc---CCCCCCCCCHHHHHHHHHHHHH
Q 014781 228 KHGSDWKTMADTLGKHRFHVKDAWRRIKL---PNQKKGQWSQEEYQKLFALVNM 278 (419)
Q Consensus 228 ~~G~~W~~IA~~LGRs~~qcr~Rwr~~l~---~~~~kg~WT~EED~~L~~lV~~ 278 (419)
-+|-.-.+||..||.|...|+.+..+... ........+.++...|+.....
T Consensus 132 ~~g~s~~EIA~~Lgis~~tVr~~l~RAr~~Lr~~~~~~~~~~~~~~~~~~~f~~ 185 (290)
T PRK09635 132 IFGLPYQQIATTIGSQASTCRQLAHRARRKINESRIAASVEPAQHRVVTRAFIE 185 (290)
T ss_pred HhCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHH
Confidence 34679999999999999999988776542 2122224677777666666553
No 119
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=20.77 E-value=2e+02 Score=23.29 Aligned_cols=51 Identities=16% Similarity=0.159 Sum_probs=37.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCcchhh-hhhhccCcchhhhhHHHHHhhCCCCC
Q 014781 142 SLEEDEMIKKAVINYIEAHRLGEDGLN-MVLHCRSYPEIKHCWKEIGAALPWRP 194 (419)
Q Consensus 142 T~eEd~~L~~aV~~y~~~~~l~~e~l~-~l~~~~~~~e~~~~W~~IA~~LP~R~ 194 (419)
|+.|...+..++..|....+ .+.|- .++.--..|++...|..|...+|-+.
T Consensus 17 ~~~Er~~~~~~L~~Y~~~~~--Vd~LV~~L~~vLdtPaK~~Ll~~iR~lIp~~d 68 (78)
T cd07347 17 TDAEREQVTRALERYHQERN--VDDLVRDLYLVLDTPAKLPLLQFLRQVIPPKD 68 (78)
T ss_pred CHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHcCcHhHHHHHHHHHHHcCHHH
Confidence 78999999999999988664 44443 23333356778889999999998544
No 120
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=20.56 E-value=1.3e+02 Score=24.61 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCCHhhHHhhhCCChHHH
Q 014781 219 LELVRKFYEKHGSDWKTMADTLGKHRFHV 247 (419)
Q Consensus 219 De~L~~lv~~~G~~W~~IA~~LGRs~~qc 247 (419)
|-.|..+.+.-|.+|..+|..||=|..++
T Consensus 4 ~~~l~~Ia~~LG~dW~~Lar~L~vs~~dI 32 (84)
T cd08805 4 EMKMAVIREHLGLSWAELARELQFSVEDI 32 (84)
T ss_pred hhHHHHHHHHhcchHHHHHHHcCCCHHHH
Confidence 45677778888999999999998555443
No 121
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=20.54 E-value=1.5e+02 Score=26.24 Aligned_cols=28 Identities=21% Similarity=0.086 Sum_probs=23.6
Q ss_pred HhCCCHhhHHhhhCCChHHHHHHhhhcc
Q 014781 228 KHGSDWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 228 ~~G~~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
-.|-.-.+||..||.+...|+.+..+.+
T Consensus 132 ~~g~s~~EIA~~lgis~~tV~~~l~ra~ 159 (173)
T PRK09645 132 YRGWSTAQIAADLGIPEGTVKSRLHYAL 159 (173)
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3477999999999999999998887664
No 122
>PRK00430 fis global DNA-binding transcriptional dual regulator Fis; Provisional
Probab=20.29 E-value=2e+02 Score=23.91 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhc
Q 014781 218 ELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRI 254 (419)
Q Consensus 218 EDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~ 254 (419)
|...|..++..++.++...|..||=++..++.+-+++
T Consensus 56 Er~~i~~aL~~~~gn~s~AAr~LGIsRsTL~rKLkr~ 92 (95)
T PRK00430 56 EAPLLDMVMQYTRGNQTRAALMLGINRGTLRKKLKKY 92 (95)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHh
Confidence 6678889999999999999999997777777665543
No 123
>smart00351 PAX Paired Box domain.
Probab=20.04 E-value=5.7e+02 Score=21.97 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHhhHHhhhCC---ChHHHHHHhhhc--ccCCC----CCCCCCHHHHHHHHHHHH
Q 014781 211 NRKWTPEELELVRKFYEKHGSDWKTMADTLGK---HRFHVKDAWRRI--KLPNQ----KKGQWSQEEYQKLFALVN 277 (419)
Q Consensus 211 kg~WT~EEDe~L~~lv~~~G~~W~~IA~~LGR---s~~qcr~Rwr~~--l~~~~----~kg~WT~EED~~L~~lV~ 277 (419)
..+++.++-+.++.++. -|..-..||..||- |...+..||+.. +.|.. ....=+...+..|+.++.
T Consensus 15 ~~~~s~~~R~riv~~~~-~G~s~~~iA~~~gvs~~tV~kwi~r~~~~G~~~pk~~gg~rp~~~~~~~~~~I~~~~~ 89 (125)
T smart00351 15 GRPLPDEERQRIVELAQ-NGVRPCDISRQLCVSHGCVSKILGRYYETGSIRPGAIGGSKPKVATPKVVKKIADYKQ 89 (125)
T ss_pred CCCCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcCCcCCCCCCCCccCHHHHHHHHHHHH
Confidence 46699999999999986 68899999999984 555666777654 23321 222345566666676766
Done!