Query 014781
Match_columns 419
No_of_seqs 260 out of 2127
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 17:42:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014781.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014781hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 100.0 3E-36 1E-40 271.7 13.1 152 134-325 2-156 (159)
2 1h89_C C-MYB, MYB proto-oncoge 100.0 3E-36 1E-40 271.7 10.3 148 210-381 5-157 (159)
3 1h8a_C AMV V-MYB, MYB transfor 100.0 6.6E-32 2.3E-36 235.1 13.0 122 186-325 1-125 (128)
4 1h8a_C AMV V-MYB, MYB transfor 100.0 1.4E-29 4.8E-34 220.4 10.0 122 236-381 1-126 (128)
5 3zqc_A MYB3; transcription-DNA 99.9 2.3E-27 7.7E-32 207.4 12.5 108 211-337 2-111 (131)
6 2k9n_A MYB24; R2R3 domain, DNA 99.9 1E-26 3.5E-31 196.4 12.0 97 211-325 1-99 (107)
7 1gv2_A C-MYB, MYB proto-oncoge 99.9 1.5E-26 5E-31 194.5 12.4 98 210-325 3-102 (105)
8 3osg_A MYB21; transcription-DN 99.9 1.4E-26 4.9E-31 201.1 12.1 99 209-325 9-108 (126)
9 3zqc_A MYB3; transcription-DNA 99.9 5.5E-25 1.9E-29 192.3 8.1 108 138-267 2-111 (131)
10 1gv2_A C-MYB, MYB proto-oncoge 99.9 3.4E-24 1.2E-28 180.0 11.5 99 136-256 2-102 (105)
11 2k9n_A MYB24; R2R3 domain, DNA 99.9 1.2E-23 4.1E-28 177.6 11.1 101 261-385 1-104 (107)
12 3osg_A MYB21; transcription-DN 99.9 3.4E-23 1.1E-27 179.8 11.3 104 257-385 7-113 (126)
13 2dim_A Cell division cycle 5-l 99.7 1E-17 3.4E-22 130.8 5.1 61 209-269 7-69 (70)
14 2dim_A Cell division cycle 5-l 99.7 1.1E-16 3.6E-21 125.0 7.8 67 256-340 4-70 (70)
15 1ign_A Protein (RAP1); RAP1,ye 99.5 6.8E-14 2.3E-18 131.9 9.4 117 209-325 6-198 (246)
16 2llk_A Cyclin-D-binding MYB-li 99.5 4.7E-14 1.6E-18 110.9 7.0 61 195-255 6-67 (73)
17 1guu_A C-MYB, MYB proto-oncoge 99.5 4.5E-14 1.5E-18 103.6 5.8 49 210-258 2-52 (52)
18 1gvd_A MYB proto-oncogene prot 99.5 6.3E-14 2.1E-18 102.9 6.2 49 210-258 2-52 (52)
19 2d9a_A B-MYB, MYB-related prot 99.4 1.1E-13 3.8E-18 104.5 6.7 52 209-260 6-59 (60)
20 2d9a_A B-MYB, MYB-related prot 99.4 1.8E-13 6.2E-18 103.4 7.3 57 256-330 3-59 (60)
21 1gvd_A MYB proto-oncogene prot 99.4 2E-13 6.9E-18 100.2 6.5 50 259-325 1-50 (52)
22 1guu_A C-MYB, MYB proto-oncoge 99.4 2.7E-13 9.3E-18 99.4 6.1 49 260-325 2-50 (52)
23 2roh_A RTBP1, telomere binding 99.4 4.3E-13 1.5E-17 115.2 8.0 69 209-277 29-109 (122)
24 3sjm_A Telomeric repeat-bindin 99.4 2.6E-13 8.9E-18 104.1 5.9 51 209-259 9-63 (64)
25 2din_A Cell division cycle 5-l 99.4 1.3E-13 4.4E-18 106.2 3.9 56 206-261 3-59 (66)
26 2juh_A Telomere binding protei 99.4 3.1E-13 1.1E-17 115.9 6.4 69 209-277 15-95 (121)
27 2llk_A Cyclin-D-binding MYB-li 99.4 5E-13 1.7E-17 105.0 6.5 60 246-324 8-67 (73)
28 1ity_A TRF1; helix-turn-helix, 99.4 5.5E-13 1.9E-17 103.6 6.4 57 209-265 8-68 (69)
29 1ign_A Protein (RAP1); RAP1,ye 99.4 1.3E-12 4.3E-17 123.2 9.4 77 258-348 5-111 (246)
30 1w0t_A Telomeric repeat bindin 99.4 7.9E-13 2.7E-17 97.4 5.7 47 210-256 1-51 (53)
31 1x41_A Transcriptional adaptor 99.3 1.1E-12 3.8E-17 99.2 6.5 50 209-258 6-57 (60)
32 2din_A Cell division cycle 5-l 99.3 4.8E-13 1.6E-17 103.0 4.1 58 254-331 2-59 (66)
33 1ity_A TRF1; helix-turn-helix, 99.3 1.5E-12 5.2E-17 101.1 6.9 61 256-334 5-67 (69)
34 1x41_A Transcriptional adaptor 99.3 2.2E-12 7.5E-17 97.5 7.1 52 257-325 4-55 (60)
35 2elk_A SPCC24B10.08C protein; 99.3 2.5E-12 8.5E-17 96.6 6.3 48 208-255 6-56 (58)
36 1w0t_A Telomeric repeat bindin 99.3 2.9E-12 9.8E-17 94.4 5.8 49 260-325 1-51 (53)
37 2cu7_A KIAA1915 protein; nucle 99.3 2.6E-12 9E-17 100.6 5.0 52 209-260 7-59 (72)
38 3sjm_A Telomeric repeat-bindin 99.3 3.8E-12 1.3E-16 97.6 5.6 53 258-328 8-62 (64)
39 2yum_A ZZZ3 protein, zinc fing 99.3 4.5E-12 1.6E-16 99.9 5.9 65 256-334 3-68 (75)
40 2elk_A SPCC24B10.08C protein; 99.3 8.1E-12 2.8E-16 93.8 6.6 50 258-324 6-56 (58)
41 2cu7_A KIAA1915 protein; nucle 99.2 8.2E-12 2.8E-16 97.7 6.2 53 255-325 3-55 (72)
42 2yum_A ZZZ3 protein, zinc fing 99.2 4.7E-12 1.6E-16 99.8 4.5 55 209-263 6-67 (75)
43 2roh_A RTBP1, telomere binding 99.2 1.6E-11 5.6E-16 105.3 8.0 77 258-351 28-113 (122)
44 2juh_A Telomere binding protei 99.2 7.6E-12 2.6E-16 107.3 5.3 83 256-361 12-103 (121)
45 2ckx_A NGTRF1, telomere bindin 99.2 3.5E-11 1.2E-15 96.8 8.1 66 212-277 1-78 (83)
46 2yus_A SWI/SNF-related matrix- 99.1 5.5E-11 1.9E-15 94.9 5.7 46 209-254 16-62 (79)
47 2yus_A SWI/SNF-related matrix- 99.1 1.7E-10 6E-15 91.9 5.9 52 258-327 15-67 (79)
48 2cqr_A RSGI RUH-043, DNAJ homo 99.0 2.2E-10 7.4E-15 90.0 6.2 57 257-327 14-70 (73)
49 2aje_A Telomere repeat-binding 99.0 4E-10 1.4E-14 94.4 7.2 69 208-276 10-90 (105)
50 2ltp_A Nuclear receptor corepr 98.6 3.1E-11 1.1E-15 98.4 0.0 53 255-325 10-62 (89)
51 2ltp_A Nuclear receptor corepr 98.6 3.3E-11 1.1E-15 98.3 0.0 48 209-256 14-62 (89)
52 2cqr_A RSGI RUH-043, DNAJ homo 99.0 2.3E-10 8E-15 89.8 4.3 48 209-256 16-68 (73)
53 2ckx_A NGTRF1, telomere bindin 98.9 2.6E-09 8.9E-14 85.9 7.5 68 262-346 1-77 (83)
54 1x58_A Hypothetical protein 49 98.9 1.4E-09 4.9E-14 82.1 5.5 49 208-256 5-57 (62)
55 2aje_A Telomere repeat-binding 98.9 3.6E-09 1.2E-13 88.5 7.3 68 257-341 9-84 (105)
56 2cjj_A Radialis; plant develop 98.8 2.3E-09 8E-14 87.9 4.4 64 209-272 6-87 (93)
57 2cjj_A Radialis; plant develop 98.7 1.8E-08 6.3E-13 82.6 6.0 51 260-324 7-57 (93)
58 2eqr_A N-COR1, N-COR, nuclear 98.6 6.9E-08 2.4E-12 73.0 6.0 47 209-255 10-57 (61)
59 2cqq_A RSGI RUH-037, DNAJ homo 98.5 1.2E-07 4.1E-12 74.1 5.1 48 209-256 6-57 (72)
60 2eqr_A N-COR1, N-COR, nuclear 98.4 3.4E-07 1.2E-11 69.1 5.8 48 259-324 10-57 (61)
61 1x58_A Hypothetical protein 49 98.4 5E-07 1.7E-11 68.2 6.5 52 258-327 5-59 (62)
62 2cqq_A RSGI RUH-037, DNAJ homo 98.1 4.2E-06 1.4E-10 65.3 6.6 54 258-326 5-58 (72)
63 2iw5_B Protein corest, REST co 98.1 2.8E-06 9.6E-11 79.5 5.8 47 209-255 131-178 (235)
64 1wgx_A KIAA1903 protein; MYB D 98.1 9.8E-06 3.4E-10 63.3 7.6 52 260-325 7-58 (73)
65 2xag_B REST corepressor 1; ami 98.1 3.9E-06 1.3E-10 86.8 6.5 47 260-324 379-425 (482)
66 1wgx_A KIAA1903 protein; MYB D 98.0 6.3E-06 2.1E-10 64.4 5.7 47 210-256 7-58 (73)
67 2iw5_B Protein corest, REST co 98.0 8.3E-06 2.8E-10 76.4 6.5 49 259-325 131-179 (235)
68 1fex_A TRF2-interacting telome 98.0 6.8E-06 2.3E-10 61.7 4.7 46 211-256 2-58 (59)
69 1fex_A TRF2-interacting telome 97.9 1.4E-05 5E-10 59.9 5.4 56 261-325 2-58 (59)
70 3hm5_A DNA methyltransferase 1 97.9 1.8E-05 6.2E-10 64.6 6.3 53 200-255 22-80 (93)
71 3hm5_A DNA methyltransferase 1 97.8 1.4E-05 4.9E-10 65.2 4.3 58 246-325 19-81 (93)
72 1ofc_X ISWI protein; nuclear p 97.5 0.00041 1.4E-08 68.1 9.9 99 212-324 111-273 (304)
73 2lr8_A CAsp8-associated protei 96.5 2.2E-05 7.6E-10 59.9 0.0 46 211-256 14-62 (70)
74 4eef_G F-HB80.4, designed hema 97.4 3.9E-05 1.3E-09 59.6 1.2 45 209-253 18-67 (74)
75 2xag_B REST corepressor 1; ami 97.2 0.00037 1.3E-08 72.2 6.0 46 210-255 379-425 (482)
76 1ug2_A 2610100B20RIK gene prod 97.2 0.00047 1.6E-08 55.5 5.1 45 211-255 33-81 (95)
77 2ebi_A DNA binding protein GT- 97.1 0.00049 1.7E-08 54.9 5.0 58 260-325 3-64 (86)
78 2yqk_A Arginine-glutamic acid 97.1 0.00097 3.3E-08 50.4 6.3 47 209-255 7-55 (63)
79 4eef_G F-HB80.4, designed hema 97.1 0.00017 5.9E-09 56.0 1.9 48 260-321 19-66 (74)
80 2ebi_A DNA binding protein GT- 97.0 0.00031 1.1E-08 56.1 3.2 46 210-255 3-63 (86)
81 2yqk_A Arginine-glutamic acid 97.0 0.0019 6.6E-08 48.7 7.2 50 257-324 5-55 (63)
82 4a69_C Nuclear receptor corepr 96.9 0.0013 4.6E-08 53.6 5.5 44 212-255 44-88 (94)
83 2crg_A Metastasis associated p 96.8 0.0016 5.5E-08 50.2 5.3 46 210-255 7-54 (70)
84 1ug2_A 2610100B20RIK gene prod 96.5 0.0035 1.2E-07 50.5 5.6 49 262-325 34-82 (95)
85 1ofc_X ISWI protein; nuclear p 96.5 0.0083 2.8E-07 58.8 9.1 104 260-382 109-276 (304)
86 4a69_C Nuclear receptor corepr 96.5 0.0041 1.4E-07 50.7 5.7 45 261-323 43-87 (94)
87 2crg_A Metastasis associated p 96.4 0.0059 2E-07 47.0 5.9 47 260-324 7-54 (70)
88 2y9y_A Imitation switch protei 96.3 0.019 6.6E-07 57.6 10.5 146 212-382 124-292 (374)
89 4iej_A DNA methyltransferase 1 95.7 0.013 4.6E-07 47.5 5.3 44 212-255 31-80 (93)
90 2lr8_A CAsp8-associated protei 94.3 0.0029 1E-07 48.3 0.0 48 262-325 15-62 (70)
91 4b4c_A Chromodomain-helicase-D 95.2 0.041 1.4E-06 50.5 7.5 40 210-249 6-51 (211)
92 4iej_A DNA methyltransferase 1 94.0 0.1 3.4E-06 42.4 6.1 46 262-325 31-81 (93)
93 4b4c_A Chromodomain-helicase-D 92.7 0.57 2E-05 42.7 9.9 45 333-382 136-197 (211)
94 2y9y_A Imitation switch protei 91.6 0.86 3E-05 45.7 10.2 161 138-324 104-289 (374)
95 1irz_A ARR10-B; helix-turn-hel 89.3 0.91 3.1E-05 34.2 6.2 46 209-254 5-56 (64)
96 1irz_A ARR10-B; helix-turn-hel 87.8 1.5 5.1E-05 33.0 6.4 50 259-323 5-56 (64)
97 3dtp_E RLC, myosin regulatory 62.6 10 0.00036 32.9 5.5 16 141-156 51-66 (196)
98 3cz6_A DNA-binding protein RAP 57.1 29 0.00099 30.7 7.1 50 181-230 79-141 (168)
99 2xb0_X Chromo domain-containin 56.0 9.3 0.00032 36.6 4.1 29 210-238 167-196 (270)
100 1k78_A Paired box protein PAX5 54.0 92 0.0031 25.6 11.3 65 212-277 31-104 (149)
101 1tc3_C Protein (TC3 transposas 52.3 37 0.0013 21.7 5.8 42 212-254 4-45 (51)
102 2o8x_A Probable RNA polymerase 49.8 15 0.0005 26.3 3.5 41 214-255 16-56 (70)
103 1dw9_A Cyanate lyase; cyanate 46.0 57 0.002 28.6 7.2 51 220-277 16-66 (156)
104 1ku3_A Sigma factor SIGA; heli 45.8 18 0.00061 26.6 3.5 41 214-255 11-55 (73)
105 3i4p_A Transcriptional regulat 44.8 19 0.00064 31.0 4.0 40 217-256 3-43 (162)
106 2rq5_A Protein jumonji; develo 41.5 21 0.00071 29.9 3.6 44 231-277 64-113 (121)
107 2k27_A Paired box protein PAX- 41.3 1.5E+02 0.0053 24.6 11.0 65 212-277 24-97 (159)
108 2p7v_B Sigma-70, RNA polymeras 38.9 20 0.00069 25.9 2.8 27 229-255 24-50 (68)
109 1u78_A TC3 transposase, transp 38.7 1.5E+02 0.0051 23.7 11.0 89 139-252 5-101 (141)
110 2xb0_X Chromo domain-containin 35.3 24 0.00083 33.6 3.4 21 138-158 3-23 (270)
111 3e7l_A Transcriptional regulat 34.6 60 0.0021 23.2 4.8 38 217-254 19-56 (63)
112 2li6_A SWI/SNF chromatin-remod 33.9 29 0.001 28.5 3.3 26 231-256 71-97 (116)
113 2h5n_A Hypothetical protein PG 33.4 1.7E+02 0.0059 24.2 8.2 86 138-231 32-118 (133)
114 1pdn_C Protein (PRD paired); p 33.2 1.7E+02 0.0057 22.6 8.7 65 212-277 16-89 (128)
115 2ou3_A Tellurite resistance pr 31.9 1.2E+02 0.004 25.9 7.1 83 138-231 43-128 (161)
116 2ast_A S-phase kinase-associat 29.9 48 0.0017 28.4 4.2 39 180-224 116-154 (159)
117 1u78_A TC3 transposase, transp 29.1 2.2E+02 0.0074 22.6 12.4 88 212-318 5-98 (141)
118 2e1c_A Putative HTH-type trans 28.4 71 0.0024 27.7 5.1 40 217-256 27-67 (171)
119 3hug_A RNA polymerase sigma fa 28.2 48 0.0017 25.3 3.5 39 217-255 40-78 (92)
120 1fse_A GERE; helix-turn-helix 27.5 84 0.0029 22.3 4.6 43 211-255 9-51 (74)
121 1ig6_A MRF-2, modulator recogn 26.2 47 0.0016 26.7 3.2 27 231-257 55-87 (107)
122 2dbb_A Putative HTH-type trans 26.0 79 0.0027 26.2 4.8 39 217-255 9-48 (151)
123 2lm1_A Lysine-specific demethy 25.9 45 0.0015 26.8 3.0 26 231-256 66-96 (107)
124 1tty_A Sigma-A, RNA polymerase 25.5 58 0.002 24.7 3.5 27 229-255 37-63 (87)
125 1jko_C HIN recombinase, DNA-in 25.0 94 0.0032 20.0 4.2 39 213-252 5-43 (52)
126 2cyy_A Putative HTH-type trans 24.9 85 0.0029 26.1 4.8 39 218-256 8-47 (151)
127 1k78_A Paired box protein PAX5 24.7 2.8E+02 0.0097 22.5 10.7 79 137-240 29-118 (149)
128 2eqy_A RBP2 like, jumonji, at 24.5 51 0.0017 27.3 3.2 26 231-256 64-94 (122)
129 1c20_A DEAD ringer protein; DN 24.1 60 0.002 27.0 3.6 37 221-257 56-106 (128)
130 2jrz_A Histone demethylase jar 23.6 65 0.0022 26.5 3.6 36 221-256 44-92 (117)
131 3i4p_A Transcriptional regulat 23.0 91 0.0031 26.5 4.7 43 267-327 3-45 (162)
132 1ntc_A Protein (nitrogen regul 22.6 1E+02 0.0035 23.7 4.5 37 218-254 52-88 (91)
133 3ulq_B Transcriptional regulat 22.0 1.1E+02 0.0039 23.4 4.7 45 210-256 26-70 (90)
134 2p1m_A SKP1-like protein 1A; F 21.9 88 0.003 26.8 4.4 34 234-274 119-153 (160)
135 2jxj_A Histone demethylase jar 21.8 58 0.002 25.6 2.9 26 231-256 58-88 (96)
136 2cg4_A Regulatory protein ASNC 21.1 98 0.0034 25.7 4.4 38 218-255 9-47 (152)
137 1umq_A Photosynthetic apparatu 20.7 1.3E+02 0.0046 23.0 4.7 38 217-254 41-78 (81)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=3e-36 Score=271.72 Aligned_cols=152 Identities=28% Similarity=0.464 Sum_probs=106.5
Q ss_pred CCccCCCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccCcchhhhhHHHHHhhCCCCCHHHHHHHHHHhhCCC-CCC
Q 014781 134 GFIRGKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFERD-ENR 212 (419)
Q Consensus 134 ~~~k~g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~~~~-~kg 212 (419)
|.+..|+||++||++|.++|..|+. ..|..||..||+|++.||+.||.++++|. .+|
T Consensus 2 g~~~k~~Wt~eED~~L~~~v~~~g~----------------------~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~ 59 (159)
T 1h89_C 2 GHLGKTRWTREEDEKLKKLVEQNGT----------------------DDWKVIANYLPNRTDVQCQHRWQKVLNPELIKG 59 (159)
T ss_dssp ---------------------------------------------------------------CHHHHHHTTTCTTCCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC----------------------CCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCC
Confidence 3466789999999999999999863 47999999999999999999999999984 899
Q ss_pred CCCHHHHHHHHHHHHHhCC-CHhhHHhhh-CCChHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhh
Q 014781 213 KWTPEELELVRKFYEKHGS-DWKTMADTL-GKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRT 290 (419)
Q Consensus 213 ~WT~EEDe~L~~lv~~~G~-~W~~IA~~L-GRs~~qcr~Rwr~~l~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~ 290 (419)
+||+|||+.|+.+|..||. +|..||..| |||+.||+.||.+++.|.+++++||+|||..|+++|.
T Consensus 60 ~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~------------- 126 (159)
T 1h89_C 60 PWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK------------- 126 (159)
T ss_dssp CCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHH-------------
T ss_pred CCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHH-------------
Confidence 9999999999999999997 799999999 8999999999999999999999999999999999998
Q ss_pred hcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcC
Q 014781 291 KHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLT 325 (419)
Q Consensus 291 ~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~ 325 (419)
.||. +|..||..||+||+.||++||+.++.
T Consensus 127 ~~g~-----~W~~Ia~~l~gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 127 RLGN-----RWAEIAKLLPGRTDNAIKNHWNSTMR 156 (159)
T ss_dssp HHCS-----CHHHHHTTSTTCCHHHHHHHHHTTTC
T ss_pred HHCC-----CHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 7885 89999999999999999999998884
No 2
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=3e-36 Score=271.74 Aligned_cols=148 Identities=29% Similarity=0.658 Sum_probs=105.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-CHhhHHhhh-CCChHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHH
Q 014781 210 ENRKWTPEELELVRKFYEKHGS-DWKTMADTL-GKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDLRMKASEE 287 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G~-~W~~IA~~L-GRs~~qcr~Rwr~~l~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e 287 (419)
.+++||+|||+.|+++|..||. +|..||..| |||+.||++||.++++|.+.+|+||+|||+.|+.+|.
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~---------- 74 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQ---------- 74 (159)
T ss_dssp --------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHH----------
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHH----------
Confidence 5789999999999999999995 999999999 8999999999999999999999999999999999998
Q ss_pred HhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcCCCCccCCCCChhchHHHHHHHHcCCCCCCCCCCcccc---cC
Q 014781 288 KRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSPMVAEGKWADTDDFHLVNALSGLDACCMDDVDWDNL---LE 364 (419)
Q Consensus 288 ~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~~~~v~kg~Wt~eED~~Ll~~i~~~g~~~e~~i~W~~I---~~ 364 (419)
.||. .+|..||..|++||+.||++||.++| +|.+.+++||.+||..|++++..+| ..|..| ++
T Consensus 75 ---~~g~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~l-~p~~~~~~WT~eEd~~L~~~~~~~g------~~W~~Ia~~l~ 140 (159)
T 1h89_C 75 ---KYGP----KRWSVIAKHLKGRIGKQCRERWHNHL-NPEVKKTSWTEEEDRIIYQAHKRLG------NRWAEIAKLLP 140 (159)
T ss_dssp ---HHCS----CCHHHHHHTSTTCCHHHHHHHHHHTT-CTTSCCSCCCHHHHHHHHHHHHHHC------SCHHHHHTTST
T ss_pred ---HhCc----ccHHHHHHHcCCCCHHHHHHHHHHHh-CccccccCCChHHHHHHHHHHHHHC------CCHHHHHHHCC
Confidence 7885 57999999999999999999999999 5999999999999999999999999 699988 67
Q ss_pred CCCHHHHHHHHHHHHhh
Q 014781 365 HRSGTFCRKRWNQMVKH 381 (419)
Q Consensus 365 ~Rs~~qcr~RW~~l~k~ 381 (419)
|||+.+|++||+.++++
T Consensus 141 gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 141 GRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp TCCHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988753
No 3
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.97 E-value=6.6e-32 Score=235.10 Aligned_cols=122 Identities=23% Similarity=0.436 Sum_probs=96.7
Q ss_pred HHhhCCCCCHHHHHHHHHHhhCCC-CCCCCCHHHHHHHHHHHHHhCC-CHhhHHhhh-CCChHHHHHHhhhcccCCCCCC
Q 014781 186 IGAALPWRPCESIYYRAHILFERD-ENRKWTPEELELVRKFYEKHGS-DWKTMADTL-GKHRFHVKDAWRRIKLPNQKKG 262 (419)
Q Consensus 186 IA~~LP~R~~~s~y~r~~~~~~~~-~kg~WT~EEDe~L~~lv~~~G~-~W~~IA~~L-GRs~~qcr~Rwr~~l~~~~~kg 262 (419)
||+.||+|++.||+.||.++++|. .+|+||+|||+.|+++|..||. +|..||..| |||+.||++||.++++|.+++|
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~ 80 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKT 80 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCS
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccc
Confidence 789999999999999999999984 8999999999999999999996 799999999 8999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcC
Q 014781 263 QWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLT 325 (419)
Q Consensus 263 ~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~ 325 (419)
+||+|||..|+++|. .||. +|..||..||+||+.||++||+.++.
T Consensus 81 ~WT~eEd~~L~~~~~-------------~~G~-----~W~~Ia~~l~gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 81 SWTEEEDRIIYQAHK-------------RLGN-----RWAEIAKLLPGRTDNAVKNHWNSTMR 125 (128)
T ss_dssp CCCHHHHHHHHHHHH-------------HHCS-----CHHHHGGGSTTCCHHHHHHHHHTTTT
T ss_pred cCCHHHHHHHHHHHH-------------HHCc-----CHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 999999999999998 7885 89999999999999999999998884
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.96 E-value=1.4e-29 Score=220.42 Aligned_cols=122 Identities=25% Similarity=0.601 Sum_probs=95.7
Q ss_pred HHhhh-CCChHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHH
Q 014781 236 MADTL-GKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNA 314 (419)
Q Consensus 236 IA~~L-GRs~~qcr~Rwr~~l~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~ 314 (419)
||..| |||+.||+.||.++++|...+|+||+|||+.|+.+|. .||. .+|..||..|++||+.
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~-------------~~g~----~~W~~Ia~~l~~Rt~~ 63 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQ-------------KYGP----KRWSDIAKHLKGRIGK 63 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHH-------------HTCS----CCHHHHHHHSSSCCHH
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHH-------------HHCC----CCHHHHHHHhcCCcHH
Confidence 78889 8999999999999999999999999999999999998 7885 5799999999999999
Q ss_pred HHHHHHHHhcCCCCccCCCCChhchHHHHHHHHcCCCCCCCCCCcccc---cCCCCHHHHHHHHHHHHhh
Q 014781 315 ICCMKWYDQLTSPMVAEGKWADTDDFHLVNALSGLDACCMDDVDWDNL---LEHRSGTFCRKRWNQMVKH 381 (419)
Q Consensus 315 QCr~RW~~~L~~~~v~kg~Wt~eED~~Ll~~i~~~g~~~e~~i~W~~I---~~~Rs~~qcr~RW~~l~k~ 381 (419)
||+.||.++| +|.+.+++||.+||..|++++..+| .+|..| ++|||+.+|++||+.+++.
T Consensus 64 qcr~Rw~~~l-~p~~~~~~WT~eEd~~L~~~~~~~G------~~W~~Ia~~l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 64 QCRERWHNHL-NPEVKKTSWTEEEDRIIYQAHKRLG------NRWAEIAKLLPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp HHHHHHHHTT-CSSSCCSCCCHHHHHHHHHHHHHHC------SCHHHHGGGSTTCCHHHHHHHHHTTTTC
T ss_pred HHHHHHHHhc-ccccccccCCHHHHHHHHHHHHHHC------cCHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 9999999999 5999999999999999999999999 699998 5799999999999988753
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.94 E-value=2.3e-27 Score=207.39 Aligned_cols=108 Identities=19% Similarity=0.437 Sum_probs=101.0
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHhhHHhhh-CCChHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHH
Q 014781 211 NRKWTPEELELVRKFYEKHG-SDWKTMADTL-GKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDLRMKASEEK 288 (419)
Q Consensus 211 kg~WT~EEDe~L~~lv~~~G-~~W~~IA~~L-GRs~~qcr~Rwr~~l~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~ 288 (419)
+|+||+|||+.|+.+|..|| .+|..||..| |||+.||++||.++|+|.+.+|+||+|||+.|+.+|.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~----------- 70 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYL----------- 70 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHH-----------
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHH-----------
Confidence 69999999999999999999 5899999999 8999999999999999999999999999999999998
Q ss_pred hhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcCCCCccCCCCChh
Q 014781 289 RTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSPMVAEGKWADT 337 (419)
Q Consensus 289 ~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~~~~v~kg~Wt~e 337 (419)
.||. +|..||..|++||+.||++||+++|. +.+..+.|+.+
T Consensus 71 --~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~~l~-~~~~~~~~~~~ 111 (131)
T 3zqc_A 71 --KLGS-----KWSVIAKLIPGRTDNAIKNRWNSSIS-KRISTNSNHKE 111 (131)
T ss_dssp --HSCS-----CHHHHTTTSTTCCHHHHHHHHHHTTG-GGCCCCTTSCC
T ss_pred --HHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHH-HHhhcCCCccc
Confidence 8895 89999999999999999999999994 77777776553
No 6
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.94 E-value=1e-26 Score=196.41 Aligned_cols=97 Identities=22% Similarity=0.389 Sum_probs=93.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CHhhHHhhh-CCChHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHH
Q 014781 211 NRKWTPEELELVRKFYEKHGS-DWKTMADTL-GKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDLRMKASEEK 288 (419)
Q Consensus 211 kg~WT~EEDe~L~~lv~~~G~-~W~~IA~~L-GRs~~qcr~Rwr~~l~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~ 288 (419)
+|+||+|||+.|+.+|..||. +|..||..| |||+.||++||.++|+|.+++|+||+|||..|+.+|.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~----------- 69 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYA----------- 69 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHH-----------
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHH-----------
Confidence 589999999999999999997 999999999 7999999999999999999999999999999999998
Q ss_pred hhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcC
Q 014781 289 RTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLT 325 (419)
Q Consensus 289 ~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~ 325 (419)
.||. +|..||..||+||+.||++||+.++.
T Consensus 70 --~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~l~r 99 (107)
T 2k9n_A 70 --EYGP-----KWNKISKFLKNRSDNNIRNRWMMIAR 99 (107)
T ss_dssp --HTCS-----CHHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred --HhCc-----CHHHHHHHCCCCCHHHHHHHHHHHHh
Confidence 7895 89999999999999999999998874
No 7
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.94 E-value=1.5e-26 Score=194.48 Aligned_cols=98 Identities=27% Similarity=0.525 Sum_probs=94.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-CHhhHHhhh-CCChHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHH
Q 014781 210 ENRKWTPEELELVRKFYEKHGS-DWKTMADTL-GKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDLRMKASEE 287 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G~-~W~~IA~~L-GRs~~qcr~Rwr~~l~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e 287 (419)
.+|+||+|||+.|+++|..||. +|..||..| |||+.||++||.++++|.+++|+||+|||..|+.+|.
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~---------- 72 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK---------- 72 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHH----------
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHH----------
Confidence 5799999999999999999997 899999999 8999999999999999999999999999999999998
Q ss_pred HhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcC
Q 014781 288 KRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLT 325 (419)
Q Consensus 288 ~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~ 325 (419)
.||. +|..||..||+||+.||++||+.++.
T Consensus 73 ---~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 73 ---RLGN-----RWAEIAKLLPGRTDNAIKNHWNSTMR 102 (105)
T ss_dssp ---HHSS-----CHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred ---HhCC-----CHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 7885 89999999999999999999999884
No 8
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.94 E-value=1.4e-26 Score=201.06 Aligned_cols=99 Identities=27% Similarity=0.559 Sum_probs=95.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHhhHHhhh-CCChHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHH
Q 014781 209 DENRKWTPEELELVRKFYEKHGSDWKTMADTL-GKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDLRMKASEE 287 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G~~W~~IA~~L-GRs~~qcr~Rwr~~l~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e 287 (419)
.++|+||+|||+.|+.+|..||.+|..||..| |||+.||++||.++++|.+++|+||+|||+.|+.+|.
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~---------- 78 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQ---------- 78 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHH----------
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHH----------
Confidence 47899999999999999999999999999999 8999999999999999999999999999999999998
Q ss_pred HhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcC
Q 014781 288 KRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLT 325 (419)
Q Consensus 288 ~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~ 325 (419)
.||. +|..||..|++||+.||++||+.++.
T Consensus 79 ---~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~l~~ 108 (126)
T 3osg_A 79 ---EYGR-----QWAIIAKFFPGRTDIHIKNRWVTISN 108 (126)
T ss_dssp ---HHCS-----CHHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred ---HHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 7885 89999999999999999999999874
No 9
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.91 E-value=5.5e-25 Score=192.26 Aligned_cols=108 Identities=25% Similarity=0.378 Sum_probs=100.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccCcchhhhhHHHHHhhCCCCCHHHHHHHHHHhhCC-CCCCCCCH
Q 014781 138 GKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFER-DENRKWTP 216 (419)
Q Consensus 138 ~g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~~~-~~kg~WT~ 216 (419)
.|+||++||++|..+|..|+. ..|..||..||+|+..||+.||.++++| ..+|+||+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~----------------------~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~ 59 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGP----------------------QNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTP 59 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCS----------------------CCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCH
T ss_pred CCCCCHHHHHHHHHHHHHhCc----------------------CCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCH
Confidence 478999999999999999842 3699999999999999999999999998 48999999
Q ss_pred HHHHHHHHHHHHhCCCHhhHHhhh-CCChHHHHHHhhhcccCCCCCCCCCHH
Q 014781 217 EELELVRKFYEKHGSDWKTMADTL-GKHRFHVKDAWRRIKLPNQKKGQWSQE 267 (419)
Q Consensus 217 EEDe~L~~lv~~~G~~W~~IA~~L-GRs~~qcr~Rwr~~l~~~~~kg~WT~E 267 (419)
|||+.|+.+|..||..|..||..| |||+.||+.||..++.+....+.|+.+
T Consensus 60 eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~ 111 (131)
T 3zqc_A 60 EEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKE 111 (131)
T ss_dssp HHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCCCccc
Confidence 999999999999999999999999 899999999999999988888888764
No 10
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.91 E-value=3.4e-24 Score=180.04 Aligned_cols=99 Identities=23% Similarity=0.382 Sum_probs=92.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccCcchhhhhHHHHHhhCCCCCHHHHHHHHHHhhCCC-CCCCC
Q 014781 136 IRGKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFERD-ENRKW 214 (419)
Q Consensus 136 ~k~g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~~~~-~kg~W 214 (419)
++.|+||++||++|.++|..|+. ..|..||..||+|+..||+.||.++++|. .+|+|
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~----------------------~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~W 59 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGP----------------------KRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSW 59 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCT----------------------TCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC----------------------CcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCC
Confidence 46789999999999999999853 36999999999999999999999999984 89999
Q ss_pred CHHHHHHHHHHHHHhCCCHhhHHhhh-CCChHHHHHHhhhccc
Q 014781 215 TPEELELVRKFYEKHGSDWKTMADTL-GKHRFHVKDAWRRIKL 256 (419)
Q Consensus 215 T~EEDe~L~~lv~~~G~~W~~IA~~L-GRs~~qcr~Rwr~~l~ 256 (419)
|+|||+.|+.+|.+||.+|..||..| |||+.||+.||..++.
T Consensus 60 t~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 60 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 102 (105)
T ss_dssp CHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999 8999999999998874
No 11
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.90 E-value=1.2e-23 Score=177.58 Aligned_cols=101 Identities=27% Similarity=0.545 Sum_probs=93.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcCCCCccCCCCChhchH
Q 014781 261 KGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSPMVAEGKWADTDDF 340 (419)
Q Consensus 261 kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~~~~v~kg~Wt~eED~ 340 (419)
+|+||+|||+.|+.+|. .||. .+|..||..||+||+.||+.||.++| +|.+.+|+||.+||.
T Consensus 1 K~~Wt~eED~~L~~~v~-------------~~g~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~L-~p~i~~~~WT~eEd~ 62 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVM-------------RYGA----KDWIRISQLMITRNPRQCRERWNNYI-NPALRTDPWSPEEDM 62 (107)
T ss_dssp CCSSCHHHHHHHHHHHH-------------HHCS----SCHHHHHHHTTTSCHHHHHHHHHHHS-SSCCTTCCCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-------------HHCC----CCHHHHhhhcCCCCHHHHHHHHHHHH-cccccccccCHHHHH
Confidence 58999999999999998 7885 58999999999999999999999999 599999999999999
Q ss_pred HHHHHHHcCCCCCCCCCCcccc---cCCCCHHHHHHHHHHHHhhhCCC
Q 014781 341 HLVNALSGLDACCMDDVDWDNL---LEHRSGTFCRKRWNQMVKHLGTD 385 (419)
Q Consensus 341 ~Ll~~i~~~g~~~e~~i~W~~I---~~~Rs~~qcr~RW~~l~k~v~~~ 385 (419)
.|++++..+| .+|..| ++|||+.+|++||+.|++....+
T Consensus 63 ~L~~~~~~~G------~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 63 LLDQKYAEYG------PKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp HHHHHHHHTC------SCHHHHHHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhC------cCHHHHHHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 9999999999 689998 57999999999999999876544
No 12
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.89 E-value=3.4e-23 Score=179.80 Aligned_cols=104 Identities=24% Similarity=0.542 Sum_probs=95.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcCCCCccCCCCCh
Q 014781 257 PNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSPMVAEGKWAD 336 (419)
Q Consensus 257 ~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~~~~v~kg~Wt~ 336 (419)
+..++|+||+|||+.|+.+|. .||. +|..||..|++||..||+.||.++| +|.+.+|+||.
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~-------------~~G~-----~W~~Ia~~~~~Rt~~qcr~Rw~~~l-~p~~~~~~WT~ 67 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVA-------------QHGS-----DWKMIAATFPNRNARQCRDRWKNYL-APSISHTPWTA 67 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHH-------------HHTT-----CHHHHHHTCTTCCHHHHHHHHHHHT-STTSCCSCCCH
T ss_pred CCCCCCCCCHHHHHHHHHHHH-------------HhCC-----CHHHHHHHcCCCCHHHHHHHHhhhc-ccccccccCCH
Confidence 457899999999999999999 7884 8999999999999999999999999 59999999999
Q ss_pred hchHHHHHHHHcCCCCCCCCCCcccc---cCCCCHHHHHHHHHHHHhhhCCC
Q 014781 337 TDDFHLVNALSGLDACCMDDVDWDNL---LEHRSGTFCRKRWNQMVKHLGTD 385 (419)
Q Consensus 337 eED~~Ll~~i~~~g~~~e~~i~W~~I---~~~Rs~~qcr~RW~~l~k~v~~~ 385 (419)
+||..|++++..+| ..|..| ++|||+.+|++||..|++.++-.
T Consensus 68 eEd~~L~~~v~~~G------~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~~p 113 (126)
T 3osg_A 68 EEDALLVQKIQEYG------RQWAIIAKFFPGRTDIHIKNRWVTISNKLGIP 113 (126)
T ss_dssp HHHHHHHHHHHHHC------SCHHHHHTTSTTCCHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHC------cCHHHHHHHcCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999 689998 57999999999999999877543
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1e-17 Score=130.83 Aligned_cols=61 Identities=26% Similarity=0.447 Sum_probs=58.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCHhhHHhhh-CCChHHHHHHhhhcccCCCCCCCCCHHHH
Q 014781 209 DENRKWTPEELELVRKFYEKHG-SDWKTMADTL-GKHRFHVKDAWRRIKLPNQKKGQWSQEEY 269 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G-~~W~~IA~~L-GRs~~qcr~Rwr~~l~~~~~kg~WT~EED 269 (419)
.++|+||+|||+.|+++|..|| .+|..||..| |||+.||+.||.++|.|.+++|+||+|||
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4789999999999999999999 6999999999 69999999999999999999999999997
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=125.00 Aligned_cols=67 Identities=27% Similarity=0.527 Sum_probs=61.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcCCCCccCCCCC
Q 014781 256 LPNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSPMVAEGKWA 335 (419)
Q Consensus 256 ~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~~~~v~kg~Wt 335 (419)
.+.+++|+||+|||+.|+.+|. .||. .+|..||..|++||+.||+.||.++| +|.+++++||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~-------------~~G~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~L-~p~i~~~~wt 65 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVM-------------KYGK----NQWSRIASLLHRKSAKQCKARWYEWL-DPSIKKTEWS 65 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHH-------------HTCS----SCHHHHHHHSTTCCHHHHHHHHHHTS-CSSSCCCCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHH-------------HHCc----CCHHHHHHHhcCCCHHHHHHHHHHHc-CCcccCCCCC
Confidence 4678899999999999999999 7884 59999999999999999999999999 5999999999
Q ss_pred hhchH
Q 014781 336 DTDDF 340 (419)
Q Consensus 336 ~eED~ 340 (419)
.+||+
T Consensus 66 ~eEd~ 70 (70)
T 2dim_A 66 GPSSG 70 (70)
T ss_dssp CSCCC
T ss_pred hHhcC
Confidence 99983
No 15
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.48 E-value=6.8e-14 Score=131.86 Aligned_cols=117 Identities=14% Similarity=0.147 Sum_probs=90.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC------HhhHHhhh-CCChHHHHHHhhhcccCCCC---------------------
Q 014781 209 DENRKWTPEELELVRKFYEKHGSD------WKTMADTL-GKHRFHVKDAWRRIKLPNQK--------------------- 260 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G~~------W~~IA~~L-GRs~~qcr~Rwr~~l~~~~~--------------------- 260 (419)
..+++||+|||+.|+++|.+||+. |..||.+| |||+.||++||+.+|.+.+.
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ik 85 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLIK 85 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCBCE
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCcee
Confidence 367899999999999999999874 99999999 89999999999999987665
Q ss_pred --------CCCCCHHHHHHHHHHHHHHHHhhhhH----------------H----------------H---hhhcC--Cc
Q 014781 261 --------KGQWSQEEYQKLFALVNMDLRMKASE----------------E----------------K---RTKHG--ML 295 (419)
Q Consensus 261 --------kg~WT~EED~~L~~lV~~~l~~~~~~----------------e----------------~---~~~~G--~~ 295 (419)
+..||.+||-.|+..|..++-....+ . . ...+. ..
T Consensus 86 is~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 165 (246)
T 1ign_A 86 TKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSR 165 (246)
T ss_dssp ESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCCCC
T ss_pred eeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccccc
Confidence 78999999999999998622100000 0 0 00010 00
Q ss_pred CCCC---chhHhhhhcCCCCHHHHHHHHHHhcC
Q 014781 296 RDNI---SWEAISEKLSTRTNAICCMKWYDQLT 325 (419)
Q Consensus 296 ~~~i---~W~~IS~~m~~RS~~QCr~RW~~~L~ 325 (419)
.+.+ -|..||+.+++||..+.|+||...|.
T Consensus 166 ~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~ 198 (246)
T 1ign_A 166 RGPIAREFFKHFAEEHAAHTENAWRDRFRKFLL 198 (246)
T ss_dssp CCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHH
T ss_pred cCcchHHHHHHHHHHCCCCChhhHHHHHHHHHh
Confidence 1112 69999999999999999999998884
No 16
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.48 E-value=4.7e-14 Score=110.91 Aligned_cols=61 Identities=33% Similarity=0.489 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhhCC-CCCCCCCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcc
Q 014781 195 CESIYYRAHILFER-DENRKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 195 ~~s~y~r~~~~~~~-~~kg~WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
.-++-.||.++|+| .++|+||+|||+.|+++|.+||+.|+.||..||||+.||+.||+.+.
T Consensus 6 ~~~~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~lgRt~~q~knRw~~L~ 67 (73)
T 2llk_A 6 HHSSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRLMK 67 (73)
T ss_dssp -------------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHHTSCHHHHHHHHHHCS
T ss_pred ccccCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34566789999998 59999999999999999999999999999999999999999999764
No 17
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.47 E-value=4.5e-14 Score=103.62 Aligned_cols=49 Identities=31% Similarity=0.730 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-CHhhHHhhh-CCChHHHHHHhhhcccCC
Q 014781 210 ENRKWTPEELELVRKFYEKHGS-DWKTMADTL-GKHRFHVKDAWRRIKLPN 258 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G~-~W~~IA~~L-GRs~~qcr~Rwr~~l~~~ 258 (419)
++++||+|||+.|+++|..||. +|..||..| |||+.||+.||.++|+|.
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 4799999999999999999998 999999999 899999999999999873
No 18
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.46 E-value=6.3e-14 Score=102.89 Aligned_cols=49 Identities=27% Similarity=0.523 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-CHhhHHhhh-CCChHHHHHHhhhcccCC
Q 014781 210 ENRKWTPEELELVRKFYEKHGS-DWKTMADTL-GKHRFHVKDAWRRIKLPN 258 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G~-~W~~IA~~L-GRs~~qcr~Rwr~~l~~~ 258 (419)
.+|+||+|||+.|+++|.+||. +|..||..| |||+.||+.||.++|+|.
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999997 799999999 899999999999999873
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=1.1e-13 Score=104.50 Aligned_cols=52 Identities=27% Similarity=0.501 Sum_probs=48.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCHhhHHhhh-CCChHHHHHHhhhcccCCCC
Q 014781 209 DENRKWTPEELELVRKFYEKHG-SDWKTMADTL-GKHRFHVKDAWRRIKLPNQK 260 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G-~~W~~IA~~L-GRs~~qcr~Rwr~~l~~~~~ 260 (419)
..+++||+|||+.|+++|.+|| .+|..||..| |||+.||++||.++|+|.++
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 4789999999999999999999 4999999999 79999999999999998654
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=1.8e-13 Score=103.37 Aligned_cols=57 Identities=26% Similarity=0.540 Sum_probs=51.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcCCCCcc
Q 014781 256 LPNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSPMVA 330 (419)
Q Consensus 256 ~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~~~~v~ 330 (419)
.|.+.+++||+|||+.|+++|. .||. .+|..||..|++||+.||++||+++|. |.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~-------------~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~-p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVR-------------QFGQ----QDWKFLASHFPNRTDQQCQYRWLRVLS-GPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHH-------------HTCT----TCHHHHHHHCSSSCHHHHHHHHHHTSC-SSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHH-------------HhCC----CCHHHHHHHccCCCHHHHHHHHHHHcC-CccC
Confidence 4678899999999999999998 7884 489999999999999999999999994 6653
No 21
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.42 E-value=2e-13 Score=100.16 Aligned_cols=50 Identities=36% Similarity=0.700 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcC
Q 014781 259 QKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLT 325 (419)
Q Consensus 259 ~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~ 325 (419)
+++|+||+|||+.|+++|. .||. .+|..||..|++||+.||++||.++|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~-------------~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQ-------------KYGP----KRWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHH-------------HHCT----TCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHH-------------HHCc----ChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 3689999999999999998 7885 579999999999999999999999994
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.41 E-value=2.7e-13 Score=99.42 Aligned_cols=49 Identities=35% Similarity=0.690 Sum_probs=45.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcC
Q 014781 260 KKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLT 325 (419)
Q Consensus 260 ~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~ 325 (419)
++|+||+|||..|+++|. .||. .+|..||..|++||+.||++||.++|+
T Consensus 2 ~~~~Wt~eED~~L~~~v~-------------~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVE-------------QNGT----DDWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp -CCCCCHHHHHHHHHHHH-------------HHCS----SCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHH-------------HhCC----CCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 689999999999999998 7784 589999999999999999999999994
No 23
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.40 E-value=4.3e-13 Score=115.18 Aligned_cols=69 Identities=23% Similarity=0.450 Sum_probs=63.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHhhHHhhh-----CCChHHHHHHhhhcc-----cCCCCCCCCCHHH-HHHHHHHH
Q 014781 209 DENRKWTPEELELVRKFYEKHGS-DWKTMADTL-----GKHRFHVKDAWRRIK-----LPNQKKGQWSQEE-YQKLFALV 276 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G~-~W~~IA~~L-----GRs~~qcr~Rwr~~l-----~~~~~kg~WT~EE-D~~L~~lV 276 (419)
..+++||+|||+.|+++|.+||. +|+.|+..+ |||..||++||++++ .|.+++|.|+++| +.+|+.+.
T Consensus 29 r~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~~h 108 (122)
T 2roh_A 29 RIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQ 108 (122)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHH
Confidence 47899999999999999999998 999999974 799999999999998 7889999999999 78888777
Q ss_pred H
Q 014781 277 N 277 (419)
Q Consensus 277 ~ 277 (419)
.
T Consensus 109 ~ 109 (122)
T 2roh_A 109 A 109 (122)
T ss_dssp H
T ss_pred H
Confidence 6
No 24
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.40 E-value=2.6e-13 Score=104.10 Aligned_cols=51 Identities=29% Similarity=0.591 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHhhHHhhh---CCChHHHHHHhhhcccCCC
Q 014781 209 DENRKWTPEELELVRKFYEKHGS-DWKTMADTL---GKHRFHVKDAWRRIKLPNQ 259 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G~-~W~~IA~~L---GRs~~qcr~Rwr~~l~~~~ 259 (419)
.++++||+|||+.|+++|.+||. +|..||..+ |||+.||++||++++.+.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 47899999999999999999996 999999985 7999999999999987654
No 25
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.3e-13 Score=106.18 Aligned_cols=56 Identities=14% Similarity=0.315 Sum_probs=49.8
Q ss_pred hCC-CCCCCCCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcccCCCCC
Q 014781 206 FER-DENRKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKLPNQKK 261 (419)
Q Consensus 206 ~~~-~~kg~WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l~~~~~k 261 (419)
++| ..+++||+|||+.|+++|..||.+|..||.++|||+.||+.||..++.|..++
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~gRt~~qcr~Rw~~~l~~~~~~ 59 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQR 59 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHSSCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhcccCcCHHHHHHHHHHHhChHhcC
Confidence 455 48899999999999999999999999999955999999999999998764433
No 26
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.39 E-value=3.1e-13 Score=115.88 Aligned_cols=69 Identities=20% Similarity=0.428 Sum_probs=64.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHhhHHhhh-----CCChHHHHHHhhhccc-----CCCCCC-CCCHHHHHHHHHHH
Q 014781 209 DENRKWTPEELELVRKFYEKHGS-DWKTMADTL-----GKHRFHVKDAWRRIKL-----PNQKKG-QWSQEEYQKLFALV 276 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G~-~W~~IA~~L-----GRs~~qcr~Rwr~~l~-----~~~~kg-~WT~EED~~L~~lV 276 (419)
..+++||+|||+.|+++|.+||. +|+.|+..+ |||..||++||++++. |..++| +|+++|+.+|+.+.
T Consensus 15 r~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~~~h 94 (121)
T 2juh_A 15 RIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAH 94 (121)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHHHHH
Confidence 47899999999999999999998 999999984 7999999999999987 888889 99999999999888
Q ss_pred H
Q 014781 277 N 277 (419)
Q Consensus 277 ~ 277 (419)
.
T Consensus 95 ~ 95 (121)
T 2juh_A 95 A 95 (121)
T ss_dssp H
T ss_pred H
Confidence 7
No 27
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.38 E-value=5e-13 Score=105.03 Aligned_cols=60 Identities=22% Similarity=0.223 Sum_probs=46.2
Q ss_pred HHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhc
Q 014781 246 HVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQL 324 (419)
Q Consensus 246 qcr~Rwr~~l~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L 324 (419)
.+.-||.++++|.+++|+||+|||+.|+++|. .+|. +|+.||..| +||+.||++||+.+.
T Consensus 8 ~~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~-------------~~G~-----kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 8 SSGRENLYFQGDRNHVGKYTPEEIEKLKELRI-------------KHGN-----DWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp -----------CCCCCCSSCHHHHHHHHHHHH-------------HHSS-----CHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred ccCcceeeecCCCCCCCCCCHHHHHHHHHHHH-------------HHCC-----CHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 35568999999999999999999999999999 8896 799999999 999999999999654
No 28
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.37 E-value=5.5e-13 Score=103.57 Aligned_cols=57 Identities=21% Similarity=0.342 Sum_probs=52.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCHhhHHhhhC---CChHHHHHHhhhcccCCCCCCCCC
Q 014781 209 DENRKWTPEELELVRKFYEKHG-SDWKTMADTLG---KHRFHVKDAWRRIKLPNQKKGQWS 265 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G-~~W~~IA~~LG---Rs~~qcr~Rwr~~l~~~~~kg~WT 265 (419)
..+++||+|||+.|+++|..|| .+|..||..|+ ||+.||++||++++.|.+.++..+
T Consensus 8 ~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 8 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 4789999999999999999999 59999999995 999999999999999988777653
No 29
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.37 E-value=1.3e-12 Score=123.24 Aligned_cols=77 Identities=18% Similarity=0.300 Sum_probs=63.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcC-CCCchhHhhhhcCCCCHHHHHHHHHHhcCCCCcc------
Q 014781 258 NQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLR-DNISWEAISEKLSTRTNAICCMKWYDQLTSPMVA------ 330 (419)
Q Consensus 258 ~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~-~~i~W~~IS~~m~~RS~~QCr~RW~~~L~~~~v~------ 330 (419)
...++.||+|||+.|+++|. .+|... ....|..||..|++||+.|||+||+.+|. +.+.
T Consensus 5 ~~~k~~FT~EED~~Ile~v~-------------k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~-~~ln~vy~~d 70 (246)
T 1ign_A 5 SHNKASFTDEEDEFILDVVR-------------KNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLS-KRLEYVYEVD 70 (246)
T ss_dssp ---CCCCCHHHHHHHHHHHH-------------TSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTG-GGCCCEECBC
T ss_pred CCCCCCCCHHHHHHHHHHHH-------------HhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHh-hhcccccccC
Confidence 45788999999999999999 777522 22449999999999999999999999995 5554
Q ss_pred -----------------------CCCCChhchHHHHHHHHc
Q 014781 331 -----------------------EGKWADTDDFHLVNALSG 348 (419)
Q Consensus 331 -----------------------kg~Wt~eED~~Ll~~i~~ 348 (419)
+..|+.+||+.|+..+..
T Consensus 71 ed~~Li~d~~Gn~ikis~lp~siK~rftaeeDy~L~~~i~~ 111 (246)
T 1ign_A 71 KFGKLVRDDDGNLIKTKVLPPSIKRKFSADEDYTLAIAVKK 111 (246)
T ss_dssp TTSCBCBCTTSCBCEESSCCCCSCCCCCHHHHHHHHHHHHH
T ss_pred cchhhhhccCCCceeeeccCccccCccchhccHHHHHHHHH
Confidence 789999999999998865
No 30
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.35 E-value=7.9e-13 Score=97.44 Aligned_cols=47 Identities=26% Similarity=0.466 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CCHhhHHhhhC---CChHHHHHHhhhccc
Q 014781 210 ENRKWTPEELELVRKFYEKHG-SDWKTMADTLG---KHRFHVKDAWRRIKL 256 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G-~~W~~IA~~LG---Rs~~qcr~Rwr~~l~ 256 (419)
++++||+|||+.|+++|..|| .+|..||..|+ ||+.||++||++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 479999999999999999999 59999999996 999999999999863
No 31
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.35 E-value=1.1e-12 Score=99.19 Aligned_cols=50 Identities=14% Similarity=0.297 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCHhhHHhhh-CCChHHHHHHhhhcccCC
Q 014781 209 DENRKWTPEELELVRKFYEKHG-SDWKTMADTL-GKHRFHVKDAWRRIKLPN 258 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G-~~W~~IA~~L-GRs~~qcr~Rwr~~l~~~ 258 (419)
..+++||+|||+.|+++|..|| .+|..||..| |||+.||+.||.+++.+.
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 4789999999999999999999 6999999999 799999999999998653
No 32
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=4.8e-13 Score=102.99 Aligned_cols=58 Identities=28% Similarity=0.387 Sum_probs=51.6
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcCCCCccC
Q 014781 254 IKLPNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSPMVAE 331 (419)
Q Consensus 254 ~l~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~~~~v~k 331 (419)
+|+|.+++++||+|||+.|+.+|. .+|. +|..||. |++||+.||++||.++|. |.+++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~-------------~~g~-----~W~~Ia~-~~gRt~~qcr~Rw~~~l~-~~~~~ 59 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAK-------------LMPT-----QWRTIAP-IIGRTAAQCLEHYEFLLD-KAAQR 59 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHH-------------HCTT-----CHHHHHH-HHSSCHHHHHHHHHHHHH-HHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHH-------------HcCC-----CHHHHhc-ccCcCHHHHHHHHHHHhC-hHhcC
Confidence 578999999999999999999998 7885 9999999 777999999999999994 65543
No 33
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.34 E-value=1.5e-12 Score=101.07 Aligned_cols=61 Identities=21% Similarity=0.260 Sum_probs=53.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcC--CCCHHHHHHHHHHhcCCCCccCCC
Q 014781 256 LPNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLS--TRTNAICCMKWYDQLTSPMVAEGK 333 (419)
Q Consensus 256 ~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~--~RS~~QCr~RW~~~L~~~~v~kg~ 333 (419)
.+...+++||+|||+.|+.+|. .||. .+|..||..|+ +||+.||++||.++|. |.+.++.
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~-------------~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~-p~i~k~~ 66 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVR-------------KYGE----GNWSKILLHYKFNNRTSVMLKDRWRTMKK-LKLISSD 66 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHH-------------HHCS----SCHHHHHHHSCCSSCCHHHHHHHHHHHHH-TSCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHH-------------HHCC----CcHHHHHHHcCcCCCCHHHHHHHHHHHcC-CCCCCCC
Confidence 4567889999999999999999 7884 48999999999 9999999999999995 7776655
Q ss_pred C
Q 014781 334 W 334 (419)
Q Consensus 334 W 334 (419)
.
T Consensus 67 ~ 67 (69)
T 1ity_A 67 S 67 (69)
T ss_dssp C
T ss_pred C
Confidence 4
No 34
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.33 E-value=2.2e-12 Score=97.52 Aligned_cols=52 Identities=17% Similarity=0.442 Sum_probs=47.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcC
Q 014781 257 PNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLT 325 (419)
Q Consensus 257 ~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~ 325 (419)
+.+.+++||+|||++|+++|. .||. .+|..||..|++||+.||++||.++|.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~-------------~~G~----~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVM-------------DCGF----GNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHH-------------HTCT----TCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHH-------------HHCc----CcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 567899999999999999998 7884 489999999999999999999999995
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.31 E-value=2.5e-12 Score=96.64 Aligned_cols=48 Identities=21% Similarity=0.457 Sum_probs=44.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC-CCHhhHHhhhC--CChHHHHHHhhhcc
Q 014781 208 RDENRKWTPEELELVRKFYEKHG-SDWKTMADTLG--KHRFHVKDAWRRIK 255 (419)
Q Consensus 208 ~~~kg~WT~EEDe~L~~lv~~~G-~~W~~IA~~LG--Rs~~qcr~Rwr~~l 255 (419)
|..+++||+|||+.|+++|.+|| .+|..||..|| ||+.||+.||.++.
T Consensus 6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999 79999999995 99999999999875
No 36
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.29 E-value=2.9e-12 Score=94.42 Aligned_cols=49 Identities=27% Similarity=0.367 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcC--CCCHHHHHHHHHHhcC
Q 014781 260 KKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLS--TRTNAICCMKWYDQLT 325 (419)
Q Consensus 260 ~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~--~RS~~QCr~RW~~~L~ 325 (419)
++++||+|||+.|+++|. .||. .+|..||..|+ +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~-------------~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVR-------------KYGE----GNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHH-------------HHCT----TCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHH-------------HHCc----CCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 478999999999999999 7884 48999999999 9999999999999884
No 37
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.27 E-value=2.6e-12 Score=100.58 Aligned_cols=52 Identities=27% Similarity=0.381 Sum_probs=47.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHhhHHhhh-CCChHHHHHHhhhcccCCCC
Q 014781 209 DENRKWTPEELELVRKFYEKHGSDWKTMADTL-GKHRFHVKDAWRRIKLPNQK 260 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G~~W~~IA~~L-GRs~~qcr~Rwr~~l~~~~~ 260 (419)
..+++||+|||+.|+++|..||.+|..||.+| |||+.||+.||..++.+..+
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~ 59 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK 59 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSC
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999 79999999999999764433
No 38
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.27 E-value=3.8e-12 Score=97.57 Aligned_cols=53 Identities=30% Similarity=0.371 Sum_probs=45.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcC--CCCHHHHHHHHHHhcCCCC
Q 014781 258 NQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLS--TRTNAICCMKWYDQLTSPM 328 (419)
Q Consensus 258 ~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~--~RS~~QCr~RW~~~L~~~~ 328 (419)
..++++||+|||+.|+++|. .||. .+|..||..++ +||+.||++||.+++. +.
T Consensus 8 ~~kk~~WT~eED~~L~~~V~-------------~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k-~g 62 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQ-------------KYGE----GNWAAISKNYPFVNRTAVMIKDRWRTMKR-LG 62 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHH-------------HHCT----TCHHHHHHHSCCSSCCHHHHHHHHHHHHH-TT
T ss_pred CCCCCCCCHHHHHHHHHHHH-------------ccCC----CchHHHHhhcCCCCCCHHHHHHHHHHHhc-cC
Confidence 35789999999999999999 7885 48999999976 9999999999999984 44
No 39
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.5e-12 Score=99.86 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=53.0
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcC-CCCchhHhhhhcCCCCHHHHHHHHHHhcCCCCccCCCC
Q 014781 256 LPNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLR-DNISWEAISEKLSTRTNAICCMKWYDQLTSPMVAEGKW 334 (419)
Q Consensus 256 ~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~-~~i~W~~IS~~m~~RS~~QCr~RW~~~L~~~~v~kg~W 334 (419)
.|...++.||+|||++|+++|. .||... ...+|..||..|++||..||++||.++|. +.++.|..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~-------------~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~-~~~k~g~~ 68 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLI-------------KYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFI-KLTKAGIP 68 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHH-------------HSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHG-GGSTTCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHH-------------HhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHH-HHHhcCCC
Confidence 4678899999999999999998 777200 01489999999999999999999999994 66666544
No 40
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.26 E-value=8.1e-12 Score=93.84 Aligned_cols=50 Identities=18% Similarity=0.394 Sum_probs=45.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcC-CCCHHHHHHHHHHhc
Q 014781 258 NQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLS-TRTNAICCMKWYDQL 324 (419)
Q Consensus 258 ~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~-~RS~~QCr~RW~~~L 324 (419)
.+.+++||+|||.+|+++|. .||. .+|..||..|| +||+.||+.||.+++
T Consensus 6 p~~~~~WT~eED~~L~~~v~-------------~~G~----~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 6 SGFDENWGADEELLLIDACE-------------TLGL----GNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CSCCCCCCHHHHHHHHHHHH-------------HTTT----TCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHH-------------HHCc----CCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 35578999999999999999 7884 49999999999 999999999999876
No 41
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.24 E-value=8.2e-12 Score=97.75 Aligned_cols=53 Identities=19% Similarity=0.182 Sum_probs=49.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcC
Q 014781 255 KLPNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLT 325 (419)
Q Consensus 255 l~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~ 325 (419)
..|...+++||+|||+.|+++|. .||. +|..||..|++||+.||++||+.+|.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~-------------~~G~-----~W~~Ia~~~~~Rt~~q~k~r~~~~l~ 55 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLA-------------KFGR-----RWTKISKLIGSRTVLQVKSYARQYFK 55 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHH-------------HTCS-----CHHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCCHHHHHHHHHHHH-------------HHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999 8895 99999999999999999999999984
No 42
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=4.7e-12 Score=99.78 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=49.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC------CCHhhHHhhh-CCChHHHHHHhhhcccCCCCCCC
Q 014781 209 DENRKWTPEELELVRKFYEKHG------SDWKTMADTL-GKHRFHVKDAWRRIKLPNQKKGQ 263 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G------~~W~~IA~~L-GRs~~qcr~Rwr~~l~~~~~kg~ 263 (419)
..+++||+|||+.|+++|..|| .+|..||.+| |||+.||+.||++++.+..+.|.
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 3689999999999999999999 6999999999 79999999999999877666654
No 43
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.23 E-value=1.6e-11 Score=105.35 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=68.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhc----CCCCHHHHHHHHHHhcC----CCCc
Q 014781 258 NQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKL----STRTNAICCMKWYDQLT----SPMV 329 (419)
Q Consensus 258 ~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m----~~RS~~QCr~RW~~~L~----~~~v 329 (419)
...+++||.|||+.|+++|. .||. .+|..|+..+ ++||..||++||.+++. +|.+
T Consensus 28 rr~r~~WT~EEd~~L~~gV~-------------k~G~----g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~ 90 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVE-------------HLGT----GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQ 90 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHH-------------HHSS----SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTT
T ss_pred CCCCCCCCHHHHHHHHHHHH-------------HHCC----CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccc
Confidence 45788999999999999999 7885 5999999975 79999999999999984 5888
Q ss_pred cCCCCChhc-hHHHHHHHHcCCC
Q 014781 330 AEGKWADTD-DFHLVNALSGLDA 351 (419)
Q Consensus 330 ~kg~Wt~eE-D~~Ll~~i~~~g~ 351 (419)
++|.|+++| +.+|+.+...+|.
T Consensus 91 kr~~~~p~e~~~~v~~~h~~~g~ 113 (122)
T 2roh_A 91 RRGAPVPQELLDRVLAAQAYWSV 113 (122)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHHHHHHhh
Confidence 999999999 7889999988874
No 44
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.22 E-value=7.6e-12 Score=107.27 Aligned_cols=83 Identities=16% Similarity=0.156 Sum_probs=71.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhc----CCCCHHHHHHHHHHhcC----CC
Q 014781 256 LPNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKL----STRTNAICCMKWYDQLT----SP 327 (419)
Q Consensus 256 ~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m----~~RS~~QCr~RW~~~L~----~~ 327 (419)
.+...+++||.|||+.|+.+|. .||. .+|+.|+..+ ++||..||++||.+++. .|
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~-------------k~G~----G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p 74 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVE-------------HLGT----GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAP 74 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHH-------------HHGG----GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCS
T ss_pred cCCCCCCCCCHHHHHHHHHHHH-------------HHCC----CCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCC
Confidence 3467889999999999999999 7774 4999999995 79999999999999984 37
Q ss_pred CccCC-CCChhchHHHHHHHHcCCCCCCCCCCccc
Q 014781 328 MVAEG-KWADTDDFHLVNALSGLDACCMDDVDWDN 361 (419)
Q Consensus 328 ~v~kg-~Wt~eED~~Ll~~i~~~g~~~e~~i~W~~ 361 (419)
.+++| +|+++++.+|+.+...+| ..|..
T Consensus 75 ~~krg~~~p~e~~~rv~~~h~~~g------n~~~~ 103 (121)
T 2juh_A 75 QQRRGEPVPQDLLDRVLAAHAYWS------QQQGK 103 (121)
T ss_dssp TTCCCSCCCHHHHHHHHHHHHHHH------HHHCC
T ss_pred cccCCCCCCHHHHHHHHHHHHHHc------cchhc
Confidence 78888 899999999999998888 56655
No 45
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.20 E-value=3.5e-11 Score=96.82 Aligned_cols=66 Identities=21% Similarity=0.464 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CHhhHHhh----h-CCChHHHHHHhhhcc-----cCCCCCC-CCCHHHHHHHHHHHH
Q 014781 212 RKWTPEELELVRKFYEKHGS-DWKTMADT----L-GKHRFHVKDAWRRIK-----LPNQKKG-QWSQEEYQKLFALVN 277 (419)
Q Consensus 212 g~WT~EEDe~L~~lv~~~G~-~W~~IA~~----L-GRs~~qcr~Rwr~~l-----~~~~~kg-~WT~EED~~L~~lV~ 277 (419)
++||+|||+.|+++|.+||. +|+.|+.. | |||+.+|++||++++ .|..++| +.+++...+++.+-.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a 78 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA 78 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998 99999996 6 899999999999997 4655555 677777777777654
No 46
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.12 E-value=5.5e-11 Score=94.86 Aligned_cols=46 Identities=20% Similarity=0.400 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHhhHHhhh-CCChHHHHHHhhhc
Q 014781 209 DENRKWTPEELELVRKFYEKHGSDWKTMADTL-GKHRFHVKDAWRRI 254 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G~~W~~IA~~L-GRs~~qcr~Rwr~~ 254 (419)
..+++||+|||+.|+++|..||.+|..||.+| +||+.||+.||.++
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred ccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 36799999999999999999999999999999 69999999999998
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.05 E-value=1.7e-10 Score=91.93 Aligned_cols=52 Identities=19% Similarity=0.486 Sum_probs=46.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHh-cCCC
Q 014781 258 NQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQ-LTSP 327 (419)
Q Consensus 258 ~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~-L~~~ 327 (419)
...+++||+|||.+|+++|. .||. +|..||.+||+||..||+.||.++ +.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~-------------~~G~-----~W~~IA~~v~~RT~~qcr~r~~~~~i~d~ 67 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALE-------------MYKD-----DWNKVSEHVGSRTQDECILHFLRLPIEDP 67 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHH-------------HSSS-----CHHHHHHHHSSCCHHHHHHHHTTSCCCCS
T ss_pred cccCCCcCHHHHHHHHHHHH-------------HhCC-----CHHHHHHHcCCCCHHHHHHHHHHhccccc
Confidence 45678999999999999999 7884 999999999999999999999988 5433
No 48
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.05 E-value=2.2e-10 Score=90.02 Aligned_cols=57 Identities=12% Similarity=0.331 Sum_probs=47.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcCCC
Q 014781 257 PNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSP 327 (419)
Q Consensus 257 ~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~~~ 327 (419)
+...+++||.+||.+|+.+|. .||. ....+|..||.+||+||..||+.||..++.++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~-------------~~g~-~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d~ 70 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQ-------------QYPR-GSSDCWDKIARCVPSKSKEDCIARYKLLVSGP 70 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHH-------------HSCS-SSHHHHHHHGGGCSSSCHHHHHHHHHHHHSSC
T ss_pred cccCCCCCCHHHHHHHHHHHH-------------HcCC-CCCchHHHHHHHcCCCCHHHHHHHHHHHHHcc
Confidence 345788999999999999998 6762 11248999999999999999999999998644
No 49
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.03 E-value=4e-10 Score=94.41 Aligned_cols=69 Identities=22% Similarity=0.427 Sum_probs=58.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHhhHHhhh-----CCChHHHHHHhhhcc-----cCCCCCCCCCHHHHHH-HHHH
Q 014781 208 RDENRKWTPEELELVRKFYEKHGS-DWKTMADTL-----GKHRFHVKDAWRRIK-----LPNQKKGQWSQEEYQK-LFAL 275 (419)
Q Consensus 208 ~~~kg~WT~EEDe~L~~lv~~~G~-~W~~IA~~L-----GRs~~qcr~Rwr~~l-----~~~~~kg~WT~EED~~-L~~l 275 (419)
+..+++||+|||+.|+.+|.+||. +|+.|+..+ |||..+|++||++++ .|..++|.=++.|-.. ++++
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~~~ 89 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVLNA 89 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHHHH
Confidence 357899999999999999999998 999999964 799999999999998 5788888777766543 4444
Q ss_pred H
Q 014781 276 V 276 (419)
Q Consensus 276 V 276 (419)
-
T Consensus 90 ~ 90 (105)
T 2aje_A 90 H 90 (105)
T ss_dssp H
T ss_pred H
Confidence 3
No 50
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.58 E-value=3.1e-11 Score=98.38 Aligned_cols=53 Identities=21% Similarity=0.345 Sum_probs=49.1
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcC
Q 014781 255 KLPNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLT 325 (419)
Q Consensus 255 l~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~ 325 (419)
..|.+..|+||+|||..|+++|. .||. +|..||..|++||..||++||+++|.
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~-------------~~G~-----~W~~IA~~l~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLL-------------EHGR-----NWSAIARMVGSKTVSQCKNFYFNYKK 62 (89)
Confidence 45678999999999999999998 7885 89999999999999999999999985
No 51
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.57 E-value=3.3e-11 Score=98.26 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHhhHHhhh-CCChHHHHHHhhhccc
Q 014781 209 DENRKWTPEELELVRKFYEKHGSDWKTMADTL-GKHRFHVKDAWRRIKL 256 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G~~W~~IA~~L-GRs~~qcr~Rwr~~l~ 256 (419)
..+|+||+|||+.|+++|..||.+|..||..| |||..||+.||..++.
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKK 62 (89)
Confidence 47899999999999999999999999999999 7999999999998874
No 52
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.99 E-value=2.3e-10 Score=89.81 Aligned_cols=48 Identities=13% Similarity=0.295 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC----CCHhhHHhhh-CCChHHHHHHhhhccc
Q 014781 209 DENRKWTPEELELVRKFYEKHG----SDWKTMADTL-GKHRFHVKDAWRRIKL 256 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G----~~W~~IA~~L-GRs~~qcr~Rwr~~l~ 256 (419)
..+++||+|||.+|+.++..|| .+|..||.+| |||..||+.||..++.
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999999 5899999999 8999999999999874
No 53
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.91 E-value=2.6e-09 Score=85.86 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhh----cCCCCHHHHHHHHHHhcC----CCCccCCC
Q 014781 262 GQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEK----LSTRTNAICCMKWYDQLT----SPMVAEGK 333 (419)
Q Consensus 262 g~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~----m~~RS~~QCr~RW~~~L~----~~~v~kg~ 333 (419)
++||+|||+.|+.+|. .||. .+|..|+.. |++||..||++||.+++. +|.+++|.
T Consensus 1 r~WT~eEd~~L~~gv~-------------k~G~----g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~ 63 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVE-------------HLGT----GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGE 63 (83)
T ss_dssp CCCCHHHHHHHHHHHH-------------HHCS----SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSS
T ss_pred CCCCHHHHHHHHHHHH-------------HHCC----CCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCC
Confidence 4799999999999999 7884 589999996 889999999999999884 46666665
Q ss_pred -CChhchHHHHHHH
Q 014781 334 -WADTDDFHLVNAL 346 (419)
Q Consensus 334 -Wt~eED~~Ll~~i 346 (419)
..++...+++.+.
T Consensus 64 ~~p~~~~~rv~~~~ 77 (83)
T 2ckx_A 64 PVPQDLLDRVLAAH 77 (83)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 4444445555554
No 54
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.91 E-value=1.4e-09 Score=82.15 Aligned_cols=49 Identities=14% Similarity=0.353 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCHhhHH---hhh-CCChHHHHHHhhhccc
Q 014781 208 RDENRKWTPEELELVRKFYEKHGSDWKTMA---DTL-GKHRFHVKDAWRRIKL 256 (419)
Q Consensus 208 ~~~kg~WT~EEDe~L~~lv~~~G~~W~~IA---~~L-GRs~~qcr~Rwr~~l~ 256 (419)
+..+.+||+|||+.|++.|.+||.+|..|+ ..+ |||..++.+||+++..
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 457899999999999999999999999999 466 8999999999999863
No 55
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.87 E-value=3.6e-09 Score=88.55 Aligned_cols=68 Identities=21% Similarity=0.251 Sum_probs=57.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhc----CCCCHHHHHHHHHHhcC----CCC
Q 014781 257 PNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKL----STRTNAICCMKWYDQLT----SPM 328 (419)
Q Consensus 257 ~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m----~~RS~~QCr~RW~~~L~----~~~ 328 (419)
....+++||.|||+.|+.+|. .||. .+|..|+..+ ++||..+|++||.+++. +|.
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~-------------k~G~----g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~ 71 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVE-------------KLGT----GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQ 71 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHH-------------HHCS----SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTT
T ss_pred CCCCCCCCCHHHHHHHHHHHH-------------HhCC----CChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcc
Confidence 356789999999999999999 7885 5999999976 79999999999999984 477
Q ss_pred ccCCCCChhchHH
Q 014781 329 VAEGKWADTDDFH 341 (419)
Q Consensus 329 v~kg~Wt~eED~~ 341 (419)
+++|.-++.+-..
T Consensus 72 ~~rg~~~P~~~l~ 84 (105)
T 2aje_A 72 QRRGEPVPQELLN 84 (105)
T ss_dssp TTTCCSCCCHHHH
T ss_pred cccCCCCCHHHHH
Confidence 7888777665433
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.82 E-value=2.3e-09 Score=87.91 Aligned_cols=64 Identities=17% Similarity=0.381 Sum_probs=42.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC----CCHhhHHhhh-CCChHHHHHHhhhccc------------CC-CCCCCCCHHHHH
Q 014781 209 DENRKWTPEELELVRKFYEKHG----SDWKTMADTL-GKHRFHVKDAWRRIKL------------PN-QKKGQWSQEEYQ 270 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G----~~W~~IA~~L-GRs~~qcr~Rwr~~l~------------~~-~~kg~WT~EED~ 270 (419)
...++||+|||..|..++..|| ..|..||.+| |||..+|+.||..++. |. ...|.|+.+|++
T Consensus 6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~~~~~~~~~~~~ 85 (93)
T 2cjj_A 6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYRTTGGNMKTDEK 85 (93)
T ss_dssp --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC---------------
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccHHH
Confidence 3578999999999999999996 5899999999 7999999999998852 11 123467777666
Q ss_pred HH
Q 014781 271 KL 272 (419)
Q Consensus 271 ~L 272 (419)
++
T Consensus 86 ~~ 87 (93)
T 2cjj_A 86 RF 87 (93)
T ss_dssp --
T ss_pred HH
Confidence 54
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.69 E-value=1.8e-08 Score=82.57 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhc
Q 014781 260 KKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQL 324 (419)
Q Consensus 260 ~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L 324 (419)
..+.||.|||..|..++. .||. .....|..||..||+||..||+.||..++
T Consensus 7 ~~~~WT~eEd~~L~~al~-------------~~~~-~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALA-------------VYDK-DTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHH-------------HSCT-TCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH-------------HcCC-CCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 467999999999999998 5652 12358999999999999999999999876
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=6.9e-08 Score=72.98 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHhhHHhhh-CCChHHHHHHhhhcc
Q 014781 209 DENRKWTPEELELVRKFYEKHGSDWKTMADTL-GKHRFHVKDAWRRIK 255 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G~~W~~IA~~L-GRs~~qcr~Rwr~~l 255 (419)
...++||+||++.+.+++..||.+|..||.+| +||..||..+|....
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 35689999999999999999999999999999 799999999998764
No 59
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.49 E-value=1.2e-07 Score=74.13 Aligned_cols=48 Identities=23% Similarity=0.428 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC----CCHhhHHhhhCCChHHHHHHhhhccc
Q 014781 209 DENRKWTPEELELVRKFYEKHG----SDWKTMADTLGKHRFHVKDAWRRIKL 256 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G----~~W~~IA~~LGRs~~qcr~Rwr~~l~ 256 (419)
...+.||.||+..|.+++..|+ ..|..||.+||||..+|+.+|..+..
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4678999999999999999997 47999999999999999999998864
No 60
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=3.4e-07 Score=69.12 Aligned_cols=48 Identities=17% Similarity=0.274 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhc
Q 014781 259 QKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQL 324 (419)
Q Consensus 259 ~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L 324 (419)
...++||+||+.+|.+++. .||. +|..||..||+||..||..+|+...
T Consensus 10 ~~~~~WT~eE~~~F~~~~~-------------~~gk-----~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFI-------------QHPK-----NFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHH-------------HSTT-----CHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHH-------------HhCC-----CHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 3457999999999999998 7884 9999999999999999999998765
No 61
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.40 E-value=5e-07 Score=68.22 Aligned_cols=52 Identities=21% Similarity=0.336 Sum_probs=45.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhh---hhcCCCCHHHHHHHHHHhcCCC
Q 014781 258 NQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAIS---EKLSTRTNAICCMKWYDQLTSP 327 (419)
Q Consensus 258 ~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS---~~m~~RS~~QCr~RW~~~L~~~ 327 (419)
...+.+||+||+..|++.|. .||. +|..|+ ..+++||....++||+++...+
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~-------------k~G~-----~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVK-------------TMGN-----HWNSILWSFPFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHH-------------HHCS-----CHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCCHHHHHHHHHHHH-------------HHhH-----hHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence 34678999999999999999 8895 999999 4667999999999999988543
No 62
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.14 E-value=4.2e-06 Score=65.35 Aligned_cols=54 Identities=20% Similarity=0.240 Sum_probs=44.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcCC
Q 014781 258 NQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTS 326 (419)
Q Consensus 258 ~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~~ 326 (419)
....+.||.||+..|..++. .|+. ...-.|..||..| +||..+|+.+|..+..+
T Consensus 5 ~~~~~~WT~eE~k~fe~al~-------------~~p~-~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMV-------------KFPG-GTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHH-------------HSCT-TCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHH-------------HCCC-CCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34677999999999999998 5552 1234799999999 69999999999988754
No 63
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.10 E-value=2.8e-06 Score=79.51 Aligned_cols=47 Identities=28% Similarity=0.469 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHhhHHhhh-CCChHHHHHHhhhcc
Q 014781 209 DENRKWTPEELELVRKFYEKHGSDWKTMADTL-GKHRFHVKDAWRRIK 255 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G~~W~~IA~~L-GRs~~qcr~Rwr~~l 255 (419)
...++||+||+..+++++..||.+|..||..| +||..||+.+|..+.
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 178 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 36789999999999999999999999999999 699999999999885
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.08 E-value=9.8e-06 Score=63.31 Aligned_cols=52 Identities=17% Similarity=0.376 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcC
Q 014781 260 KKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLT 325 (419)
Q Consensus 260 ~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~ 325 (419)
....||.+|+.+|..++. .|+. ...-.|..||..||+||..+|+.||..++.
T Consensus 7 ~~~~WT~eE~k~fe~ALa-------------~~~~-~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFA-------------SLPK-HKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSSCCCHHHHHHHHHHHH-------------HSCS-SSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCCHHHHHHHHHHHH-------------HCCC-CCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 456899999999999997 4431 123479999999999999999999998874
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.06 E-value=3.9e-06 Score=86.83 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhc
Q 014781 260 KKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQL 324 (419)
Q Consensus 260 ~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L 324 (419)
....||.+|-..+++++. .||. +|..||..|++||..||+..|++.-
T Consensus 379 ~~~~WT~eE~~~f~~al~-------------~yGk-----dw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIR-------------KYGR-----DFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHH-------------HHTT-----CHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHH-------------HHCc-----CHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467999999999999998 8995 9999999999999999999988654
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.03 E-value=6.3e-06 Score=64.42 Aligned_cols=47 Identities=11% Similarity=0.280 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----CHhhHHhhh-CCChHHHHHHhhhccc
Q 014781 210 ENRKWTPEELELVRKFYEKHGS----DWKTMADTL-GKHRFHVKDAWRRIKL 256 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G~----~W~~IA~~L-GRs~~qcr~Rwr~~l~ 256 (419)
....||.+|+..|..++..|+. .|..||.+| |||..+|+.||..++.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999974 799999999 6999999999999864
No 67
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.98 E-value=8.3e-06 Score=76.37 Aligned_cols=49 Identities=16% Similarity=0.256 Sum_probs=45.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcC
Q 014781 259 QKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLT 325 (419)
Q Consensus 259 ~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~ 325 (419)
...+.||+||...+++++. .||. +|..||..||+||..||+++|++...
T Consensus 131 k~s~~WTeEE~~lFleAl~-------------kYGK-----DW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIR-------------KYGR-----DFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHH-------------HHSS-----CHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHH-------------HHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4567999999999999998 8995 89999999999999999999998874
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.97 E-value=6.8e-06 Score=61.67 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CC-CHhhHHh-hh-CCChHHHHHHhhhccc
Q 014781 211 NRKWTPEELELVRKFYEKH--------GS-DWKTMAD-TL-GKHRFHVKDAWRRIKL 256 (419)
Q Consensus 211 kg~WT~EEDe~L~~lv~~~--------G~-~W~~IA~-~L-GRs~~qcr~Rwr~~l~ 256 (419)
+.+||+|||+.|+.+|..| |+ -|..++. .+ ++|-.+|++||.+.|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 55 8999999 67 7999999999998763
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.91 E-value=1.4e-05 Score=59.86 Aligned_cols=56 Identities=13% Similarity=0.268 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhh-hcCCCCHHHHHHHHHHhcC
Q 014781 261 KGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISE-KLSTRTNAICCMKWYDQLT 325 (419)
Q Consensus 261 kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~-~m~~RS~~QCr~RW~~~L~ 325 (419)
+.+||+|||..|++.|.++-. .-+...++.-|..+++ .++.+|..+||+||...|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~---------~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENAR---------SPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCC---------STTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhcc---------ccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 468999999999999984210 0023344577999999 8999999999999999883
No 70
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.90 E-value=1.8e-05 Score=64.60 Aligned_cols=53 Identities=11% Similarity=0.229 Sum_probs=46.7
Q ss_pred HHHHHhhCCCCCCCCCHHHHHHHHHHHHHhCCCHhhHHhhh------CCChHHHHHHhhhcc
Q 014781 200 YRAHILFERDENRKWTPEELELVRKFYEKHGSDWKTMADTL------GKHRFHVKDAWRRIK 255 (419)
Q Consensus 200 ~r~~~~~~~~~kg~WT~EEDe~L~~lv~~~G~~W~~IA~~L------GRs~~qcr~Rwr~~l 255 (419)
.+|..++.+ .+||.||+..|.+|+.+||..|..|+..+ +||..++++||..+.
T Consensus 22 eeY~~~L~~---~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 22 QEYQLYLHD---DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp HHHHHHTCB---TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCC---CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 355555554 89999999999999999999999999999 599999999999875
No 71
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.81 E-value=1.4e-05 Score=65.19 Aligned_cols=58 Identities=14% Similarity=0.311 Sum_probs=50.7
Q ss_pred HHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhc-----CCCCHHHHHHHH
Q 014781 246 HVKDAWRRIKLPNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKL-----STRTNAICCMKW 320 (419)
Q Consensus 246 qcr~Rwr~~l~~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m-----~~RS~~QCr~RW 320 (419)
=+.++|..+|.+ +.||.||+..|++++. .+|. .|..|+..+ ++||..+.++||
T Consensus 19 yt~eeY~~~L~~----~~WTkEETd~Lf~L~~-------------~fdl-----RW~vI~DRy~~~~~~~Rt~EdLK~Ry 76 (93)
T 3hm5_A 19 YSEQEYQLYLHD----DAWTKAETDHLFDLSR-------------RFDL-----RFVVIHDRYDHQQFKKRSVEDLKERY 76 (93)
T ss_dssp CCHHHHHHHTCB----TTBCHHHHHHHHHHHH-------------HTTT-----CHHHHHHHSCTTTSCCCCHHHHHHHH
T ss_pred cCHHHHHHHcCC----CCCCHHHHHHHHHHHH-------------HhCC-----CeeeehhhhccCCCCCCCHHHHHHHH
Confidence 456788888754 8999999999999999 7884 999999999 479999999999
Q ss_pred HHhcC
Q 014781 321 YDQLT 325 (419)
Q Consensus 321 ~~~L~ 325 (419)
+.+..
T Consensus 77 Y~v~~ 81 (93)
T 3hm5_A 77 YHICA 81 (93)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 72
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=97.47 E-value=0.00041 Score=68.06 Aligned_cols=99 Identities=20% Similarity=0.236 Sum_probs=76.9
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CHhhHHhhh-CCChHHHHHHhhhcc-------c--------------------------
Q 014781 212 RKWTPEELELVRKFYEKHGS-DWKTMADTL-GKHRFHVKDAWRRIK-------L-------------------------- 256 (419)
Q Consensus 212 g~WT~EEDe~L~~lv~~~G~-~W~~IA~~L-GRs~~qcr~Rwr~~l-------~-------------------------- 256 (419)
+.||..+...++.++..||. +|..||..| |+|+..|+..+.-+. +
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~ 190 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD 190 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999997 999999999 799999854322111 1
Q ss_pred -----------------CCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhh------------h
Q 014781 257 -----------------PNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISE------------K 307 (419)
Q Consensus 257 -----------------~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~------------~ 307 (419)
+..+...||++||..|+-++. .|| ......|..|.. .
T Consensus 191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~-------------k~G-~~~~g~we~Ir~~Ir~~p~FrFDwf 256 (304)
T 1ofc_X 191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLH-------------KLG-FDKENVYEELRAAIRASPQFRFDWF 256 (304)
T ss_dssp HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHH-------------HHC-TTSTTHHHHHHHHHHHCGGGTTCHH
T ss_pred HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHH-------------Hhc-CCCcchHHHHHHHHHhCcchhhhHH
Confidence 223445899999999999998 666 233358999973 3
Q ss_pred cCCCCHHHHHHHHHHhc
Q 014781 308 LSTRTNAICCMKWYDQL 324 (419)
Q Consensus 308 m~~RS~~QCr~RW~~~L 324 (419)
+-+||+.++..|-..+|
T Consensus 257 ~kSRTp~el~rRc~tLi 273 (304)
T 1ofc_X 257 IKSRTALELQRRCNTLI 273 (304)
T ss_dssp HHTCCHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHH
Confidence 44799999999977766
No 73
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.53 E-value=2.2e-05 Score=59.93 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CHhhHHhhhCCChHHHHHHhhhccc
Q 014781 211 NRKWTPEELELVRKFYEKHGS---DWKTMADTLGKHRFHVKDAWRRIKL 256 (419)
Q Consensus 211 kg~WT~EEDe~L~~lv~~~G~---~W~~IA~~LGRs~~qcr~Rwr~~l~ 256 (419)
--.||.|||..|+..+.+-|. .|..||..||||+.||..||+.++.
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~Lnks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKLDKNPNQVSERFQQLMK 62 (70)
Confidence 456999999999999999997 9999999999999999999998863
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.39 E-value=3.9e-05 Score=59.65 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=37.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC----CHhhHHhhh-CCChHHHHHHhhh
Q 014781 209 DENRKWTPEELELVRKFYEKHGS----DWKTMADTL-GKHRFHVKDAWRR 253 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G~----~W~~IA~~L-GRs~~qcr~Rwr~ 253 (419)
...+.||.||+..|..+...|+. .|..||..| |||..+|+.+|.-
T Consensus 18 ~ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~~ 67 (74)
T 4eef_G 18 GSGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYEL 67 (74)
T ss_dssp ----CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC-
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHHH
Confidence 35678999999999999999974 899999999 7999999999864
No 75
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.18 E-value=0.00037 Score=72.16 Aligned_cols=46 Identities=30% Similarity=0.520 Sum_probs=42.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHhhHHhhhC-CChHHHHHHhhhcc
Q 014781 210 ENRKWTPEELELVRKFYEKHGSDWKTMADTLG-KHRFHVKDAWRRIK 255 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G~~W~~IA~~LG-Rs~~qcr~Rwr~~l 255 (419)
...+||.||-..+++.+.+||.+|..||..|| ||..||+..|.++.
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999999996 99999999998763
No 76
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.15 E-value=0.00047 Score=55.53 Aligned_cols=45 Identities=18% Similarity=0.399 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CHhhHHhhh-CCChHHHHHHhhhcc
Q 014781 211 NRKWTPEELELVRKFYEKHGS---DWKTMADTL-GKHRFHVKDAWRRIK 255 (419)
Q Consensus 211 kg~WT~EEDe~L~~lv~~~G~---~W~~IA~~L-GRs~~qcr~Rwr~~l 255 (419)
---||.|||..|+..+.+-|. .|..||..| +|++.||..|++.++
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 345999999999999999986 999999999 599999999999875
No 77
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.11 E-value=0.00049 Score=54.92 Aligned_cols=58 Identities=24% Similarity=0.437 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcC----CCCHHHHHHHHHHhcC
Q 014781 260 KKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLS----TRTNAICCMKWYDQLT 325 (419)
Q Consensus 260 ~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~----~RS~~QCr~RW~~~L~ 325 (419)
+...||.+|...|+++..++-. .. + .|. ....-|..||..|. .||+.||+.+|.++..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~-~f-~-----~~~-~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDG-LF-N-----TSK-SNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHH-HH-H-----HSS-CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH-HH-H-----ccc-cchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999985321 11 1 111 22347999999994 8999999999998863
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.11 E-value=0.00097 Score=50.38 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=41.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHhhHHh-hh-CCChHHHHHHhhhcc
Q 014781 209 DENRKWTPEELELVRKFYEKHGSDWKTMAD-TL-GKHRFHVKDAWRRIK 255 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G~~W~~IA~-~L-GRs~~qcr~Rwr~~l 255 (419)
.....||+||-....+.+..||.+|..|+. .| .||..+|...|....
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK 55 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWK 55 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhccc
Confidence 356789999999999999999999999999 47 599999998887654
No 79
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.08 E-value=0.00017 Score=56.01 Aligned_cols=48 Identities=10% Similarity=0.133 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHH
Q 014781 260 KKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWY 321 (419)
Q Consensus 260 ~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~ 321 (419)
..+.||.+|+..|..++. .|+ ....-.|..||+.||+||..+|+.+|.
T Consensus 19 ss~~WT~eE~K~FE~ALa-------------~yp-~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALS-------------FTN-KDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTS-------------SSC-SSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHH-------------HCC-CCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 355899999999999997 444 223457999999999999999998763
No 80
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.05 E-value=0.00031 Score=56.13 Aligned_cols=46 Identities=17% Similarity=0.465 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----------CCHhhHHhhh---C--CChHHHHHHhhhcc
Q 014781 210 ENRKWTPEELELVRKFYEKHG----------SDWKTMADTL---G--KHRFHVKDAWRRIK 255 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G----------~~W~~IA~~L---G--Rs~~qcr~Rwr~~l 255 (419)
....||.+|...|+.++..+. .-|..||..| | ||+.||+.+|.++.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 357899999999999997642 1899999998 4 99999999999886
No 81
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.03 E-value=0.0019 Score=48.73 Aligned_cols=50 Identities=12% Similarity=0.222 Sum_probs=43.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhh-hcCCCCHHHHHHHHHHhc
Q 014781 257 PNQKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISE-KLSTRTNAICCMKWYDQL 324 (419)
Q Consensus 257 ~~~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~-~m~~RS~~QCr~RW~~~L 324 (419)
|......||+||-..+.+++. .||. +|..|+. .|++||..||...|+..-
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~-------------~yGK-----df~~I~~~~v~~Kt~~~~v~fYY~wK 55 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLR-------------QYGK-----NFFRIRKELLPNKETGELITFYYYWK 55 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHH-------------HTCS-----CHHHHHHHSCTTSCHHHHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHH-------------HhCc-----cHHHHHHHHcCCCcHHHHHHHHhccc
Confidence 556778999999999999998 8995 8999999 589999999998887543
No 82
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.86 E-value=0.0013 Score=53.61 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHhhHHhhh-CCChHHHHHHhhhcc
Q 014781 212 RKWTPEELELVRKFYEKHGSDWKTMADTL-GKHRFHVKDAWRRIK 255 (419)
Q Consensus 212 g~WT~EEDe~L~~lv~~~G~~W~~IA~~L-GRs~~qcr~Rwr~~l 255 (419)
..||+||.+...+.+..||.+|..||..| +||..+|...|....
T Consensus 44 ~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~K 88 (94)
T 4a69_C 44 NMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK 88 (94)
T ss_dssp CCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhccc
Confidence 67999999999999999999999999999 599999999887653
No 83
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.82 E-value=0.0016 Score=50.23 Aligned_cols=46 Identities=22% Similarity=0.295 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHhhHHh-hh-CCChHHHHHHhhhcc
Q 014781 210 ENRKWTPEELELVRKFYEKHGSDWKTMAD-TL-GKHRFHVKDAWRRIK 255 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G~~W~~IA~-~L-GRs~~qcr~Rwr~~l 255 (419)
....||+||-....+.+..||.+|..|+. .| +||..+|...|....
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wK 54 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWK 54 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 45789999999999999999999999999 57 599999999887553
No 84
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.55 E-value=0.0035 Score=50.53 Aligned_cols=49 Identities=14% Similarity=0.386 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcC
Q 014781 262 GQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLT 325 (419)
Q Consensus 262 g~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~ 325 (419)
-.||.|||..|+..-+ ..|. ..--|..||..|++|++.|+.+||+.++.
T Consensus 34 vlWTRe~DR~IL~~cQ-------------~~G~--s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 34 VLWTREADRVILTMCQ-------------EQGA--QPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp SSSCHHHHHHHHHHHH-------------HTTS--CTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHH-------------hcCC--ChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 3799999999999988 4553 22469999999999999999999998873
No 85
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.49 E-value=0.0083 Score=58.78 Aligned_cols=104 Identities=14% Similarity=0.203 Sum_probs=79.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHH----Hh--cC--------
Q 014781 260 KKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWY----DQ--LT-------- 325 (419)
Q Consensus 260 ~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~----~~--L~-------- 325 (419)
.-+.||..+...++.++. .||. -+|..||..|+++|...++.-+. .+ |.
T Consensus 109 GF~~W~rrdf~~Fi~a~~-------------kyGr----~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~ 171 (304)
T 1ofc_X 109 GFTAWTKRDFNQFIKANE-------------KYGR----DDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQ 171 (304)
T ss_dssp SCTTCCHHHHHHHHHHHH-------------HHCT----TCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHH
T ss_pred hhcccCHHHHHHHHHHHH-------------HhCH----HHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHH
Confidence 356899999999999988 7885 58999999999999887743221 11 00
Q ss_pred --------------------------C---------CCccCCCCChhchHHHHHHHHcCCCCCCCCCCccccc-------
Q 014781 326 --------------------------S---------PMVAEGKWADTDDFHLVNALSGLDACCMDDVDWDNLL------- 363 (419)
Q Consensus 326 --------------------------~---------~~v~kg~Wt~eED~~Ll~~i~~~g~~~e~~i~W~~I~------- 363 (419)
. +..+...||.+||..||..+..+|. +.+.+|..|-
T Consensus 172 IE~gE~ki~r~~~~~~~l~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~--~~~g~we~Ir~~Ir~~p 249 (304)
T 1ofc_X 172 IERGEGKIQRRLSIKKALDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGF--DKENVYEELRAAIRASP 249 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCT--TSTTHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcC--CCcchHHHHHHHHHhCc
Confidence 1 1123457999999999999999996 4456898871
Q ss_pred --------CCCCHHHHHHHHHHHHhhh
Q 014781 364 --------EHRSGTFCRKRWNQMVKHL 382 (419)
Q Consensus 364 --------~~Rs~~qcr~RW~~l~k~v 382 (419)
..||+.++..|=+.|++.|
T Consensus 250 ~FrFDwf~kSRTp~el~rRc~tLi~~i 276 (304)
T 1ofc_X 250 QFRFDWFIKSRTALELQRRCNTLITLI 276 (304)
T ss_dssp GGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred chhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 2599999999999988754
No 86
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.46 E-value=0.0041 Score=50.74 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHh
Q 014781 261 KGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQ 323 (419)
Q Consensus 261 kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~ 323 (419)
...||+||...+.+++. .||. +|..||..|++||..+|-..|+..
T Consensus 43 ~~~WT~eE~~~F~~~~~-------------~~gK-----~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFM-------------QHPK-----NFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHH-------------HSTT-----CHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-------------HcCC-----CHHHHHHHcCCCCHHHHHHHHhcc
Confidence 45899999999999998 7884 999999999999999999888754
No 87
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.39 E-value=0.0059 Score=47.03 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhh-hcCCCCHHHHHHHHHHhc
Q 014781 260 KKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISE-KLSTRTNAICCMKWYDQL 324 (419)
Q Consensus 260 ~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~-~m~~RS~~QCr~RW~~~L 324 (419)
....||++|-..+.+++. .||. +|..|+. .|++||..+|...|+..-
T Consensus 7 ~~~~WT~eE~~~Fe~~l~-------------~yGK-----df~~I~~~~v~~Kt~~~~v~fYY~wK 54 (70)
T 2crg_A 7 GMEEWSASEACLFEEALE-------------KYGK-----DFNDIRQDFLPWKSLTSIIEYYYMWK 54 (70)
T ss_dssp SSCCCCHHHHHHHHHHHH-------------HTCS-----CHHHHHHTTCSSSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH-------------HhCc-----cHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 456899999999999998 8995 8999999 589999999999888543
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.27 E-value=0.019 Score=57.58 Aligned_cols=146 Identities=18% Similarity=0.268 Sum_probs=88.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CHhhHHhhh--CCChHHHHHHhhhcccCCCCC-CCCCHHHHHHHHHHHHHHHHhhhhHH
Q 014781 212 RKWTPEELELVRKFYEKHGS-DWKTMADTL--GKHRFHVKDAWRRIKLPNQKK-GQWSQEEYQKLFALVNMDLRMKASEE 287 (419)
Q Consensus 212 g~WT~EEDe~L~~lv~~~G~-~W~~IA~~L--GRs~~qcr~Rwr~~l~~~~~k-g~WT~EED~~L~~lV~~~l~~~~~~e 287 (419)
+.||.-+-..++.++..||. +-..||..| |.|+..|+ +|..++-..... ..|- +++.-|..--.....
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~e-----rii~~IEkgE~ki~r-- 195 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYE-----KYLKIIENEEEKIKR-- 195 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCT-----TTHHHHHHHHHHHHH--
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHH-----HHHHHHHHHHHHHHH--
Confidence 67999999999999999997 899999999 59999998 555443211100 1121 222222210000000
Q ss_pred HhhhcCCcCCCCchhHhhhhcC-CCCHHHHHHHHHHh-cC--CCCccCCCCChhchHHHHHHHHcCCCCCCCCCCcccc-
Q 014781 288 KRTKHGMLRDNISWEAISEKLS-TRTNAICCMKWYDQ-LT--SPMVAEGKWADTDDFHLVNALSGLDACCMDDVDWDNL- 362 (419)
Q Consensus 288 ~~~~~G~~~~~i~W~~IS~~m~-~RS~~QCr~RW~~~-L~--~~~v~kg~Wt~eED~~Ll~~i~~~g~~~e~~i~W~~I- 362 (419)
.- .--..|...|. -+. =|..+ |. ....+...||.+||..||..+..+|. ..+..|..|
T Consensus 196 ----~~-----~~~~~L~~Ki~~y~~------P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~--~~~g~we~Ir 258 (374)
T 2y9y_A 196 ----VK-----MQQEALRRKLSEYKN------PFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGL--DRDDVYELVR 258 (374)
T ss_dssp ----HH-----HHHHHHHHHHTTCSS------HHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTT--CSSCCHHHHH
T ss_pred ----HH-----HHHHHHHHHHHHccC------CHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhcc--CCCChHHHHH
Confidence 00 00022222222 111 12221 11 01124557999999999999999995 445679887
Q ss_pred --------------cCCCCHHHHHHHHHHHHhhh
Q 014781 363 --------------LEHRSGTFCRKRWNQMVKHL 382 (419)
Q Consensus 363 --------------~~~Rs~~qcr~RW~~l~k~v 382 (419)
+..||+..|.+|=+.|++.|
T Consensus 259 ~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~I 292 (374)
T 2y9y_A 259 DEIRDCPLFELDFYFRSRTPVELARRGNTLLQCL 292 (374)
T ss_dssp HHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 22599999999999998765
No 89
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.72 E-value=0.013 Score=47.50 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHhhHHhhh------CCChHHHHHHhhhcc
Q 014781 212 RKWTPEELELVRKFYEKHGSDWKTMADTL------GKHRFHVKDAWRRIK 255 (419)
Q Consensus 212 g~WT~EEDe~L~~lv~~~G~~W~~IA~~L------GRs~~qcr~Rwr~~l 255 (419)
..||.||...|.+|+..|+-.|..|+... +||..++..||..+.
T Consensus 31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 57999999999999999999999999886 389999999999874
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.31 E-value=0.0029 Score=48.30 Aligned_cols=48 Identities=10% Similarity=0.258 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcC
Q 014781 262 GQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLT 325 (419)
Q Consensus 262 g~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~ 325 (419)
-.||.|||..|+...+ ..|+. .--|..||..+ +||+.|+.+||..++.
T Consensus 15 vlWTReeDR~IL~~cq-------------~~G~s--~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQ-------------KRGPS--SKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 3799999999999988 45531 24699999999 7999999999998773
No 91
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.22 E-value=0.041 Score=50.47 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=32.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CHhhHHhh--h-CCChHHHHH
Q 014781 210 ENRKWTPEELELVRKFYEKHGS---DWKTMADT--L-GKHRFHVKD 249 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G~---~W~~IA~~--L-GRs~~qcr~ 249 (419)
....||..|-..|++.+.+||. .|..|+.. | ++|...+..
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~ 51 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRR 51 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHH
Confidence 4578999999999999999993 89999865 4 788877764
No 92
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.05 E-value=0.1 Score=42.35 Aligned_cols=46 Identities=17% Similarity=0.416 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcC-----CCCHHHHHHHHHHhcC
Q 014781 262 GQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLS-----TRTNAICCMKWYDQLT 325 (419)
Q Consensus 262 g~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~-----~RS~~QCr~RW~~~L~ 325 (419)
..||.||...|++++. .++ ..|..|+.... .||-.+.+.||+.+..
T Consensus 31 ~~WT~eETd~LfdLc~-------------~fd-----lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 31 DAWTKAETDHLFDLSR-------------RFD-----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TTBCHHHHHHHHHHHH-------------HTT-----TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-------------HcC-----CCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999 677 59999999984 7999999999998763
No 93
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.72 E-value=0.57 Score=42.70 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=34.0
Q ss_pred CCChhchHHHHHHHHcCCCCCCCCCCcccccC-----------------CCCHHHHHHHHHHHHhhh
Q 014781 333 KWADTDDFHLVNALSGLDACCMDDVDWDNLLE-----------------HRSGTFCRKRWNQMVKHL 382 (419)
Q Consensus 333 ~Wt~eED~~Ll~~i~~~g~~~e~~i~W~~I~~-----------------~Rs~~qcr~RW~~l~k~v 382 (419)
.|+.+||..||..|+.||. ..|..|.. .+++..+.+|-..|++.+
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~-----g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l 197 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGY-----GSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL 197 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCT-----TCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCc-----CcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence 4999999999999999997 57877611 134567888877777644
No 94
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=91.63 E-value=0.86 Score=45.67 Aligned_cols=161 Identities=17% Similarity=0.223 Sum_probs=87.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhc-cCcchhhhhHHHHHhhCC-CCCHHHHHHHHHHhhCCCC-CCCC
Q 014781 138 GKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHC-RSYPEIKHCWKEIGAALP-WRPCESIYYRAHILFERDE-NRKW 214 (419)
Q Consensus 138 ~g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~-~~~~e~~~~W~~IA~~LP-~R~~~s~y~r~~~~~~~~~-kg~W 214 (419)
..+.|.+|.+.-.+++.+= -.+|+.-+|..++.. ..+. +.....||..|. +.+...|..++.-++.+.. -.-|
T Consensus 104 ~~~LTeEE~~EKe~LL~eG--F~~WnrrDF~~FI~a~~kyG--R~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~ 179 (374)
T 2y9y_A 104 SQPLTEEEEKMKADWESEG--FTNWNKLEFRKFITVSGKYG--RNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDY 179 (374)
T ss_dssp CSSSCHHHHHHHHHHHHHC--CCCSCHHHHHHHHHHHHHHC--TTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCC
T ss_pred cCCCCHHHHHHHHHHHHhh--hcccCHHHHHHHHHHHHHhC--HhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccH
Confidence 3457777766655554320 134566666655532 1111 256889999997 8999999866555444321 0112
Q ss_pred CH------HHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhccc---CC-CCCCCCCHHHHHHHHHHHHHHHHhhh
Q 014781 215 TP------EELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKL---PN-QKKGQWSQEEYQKLFALVNMDLRMKA 284 (419)
Q Consensus 215 T~------EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l~---~~-~~kg~WT~EED~~L~~lV~~~l~~~~ 284 (419)
-. .-+++|.++-. --..|+..| .+|.+=|..+.. ++ .+...||.+||.-|+-++.
T Consensus 180 erii~~IEkgE~ki~r~~~----~~~~L~~Ki----~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~------- 244 (374)
T 2y9y_A 180 EKYLKIIENEEEKIKRVKM----QQEALRRKL----SEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLF------- 244 (374)
T ss_dssp TTTHHHHHHHHHHHHHHHH----HHHHHHHHH----TTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHH----HHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHH-------
Confidence 10 00111111111 012222222 222333444421 11 1455899999999999998
Q ss_pred hHHHhhhcCCcCCCCchhHhhhh------------cCCCCHHHHHHHHHHhc
Q 014781 285 SEEKRTKHGMLRDNISWEAISEK------------LSTRTNAICCMKWYDQL 324 (419)
Q Consensus 285 ~~e~~~~~G~~~~~i~W~~IS~~------------m~~RS~~QCr~RW~~~L 324 (419)
.+| ......|..|-.. +.+||+..+..|-..+|
T Consensus 245 ------k~G-~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi 289 (374)
T 2y9y_A 245 ------KYG-LDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLL 289 (374)
T ss_dssp ------HHT-TCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHH
T ss_pred ------Hhc-cCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 666 2333479998443 23699999988877665
No 95
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=89.33 E-value=0.91 Score=34.23 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=39.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC---CHhhHHhhhC---CChHHHHHHhhhc
Q 014781 209 DENRKWTPEELELVRKFYEKHGS---DWKTMADTLG---KHRFHVKDAWRRI 254 (419)
Q Consensus 209 ~~kg~WT~EEDe~L~~lv~~~G~---~W~~IA~~LG---Rs~~qcr~Rwr~~ 254 (419)
..+-.||+|.-+....+|.+.|. .+..|.+.|| .|..+|..+.+.+
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 35678999999999999999996 4789999984 7999998876654
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=87.75 E-value=1.5 Score=33.04 Aligned_cols=50 Identities=16% Similarity=0.216 Sum_probs=40.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcC--CCCHHHHHHHHHHh
Q 014781 259 QKKGQWSQEEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLS--TRTNAICCMKWYDQ 323 (419)
Q Consensus 259 ~~kg~WT~EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~--~RS~~QCr~RW~~~ 323 (419)
..+-.||+|.-+.++++|. ..|. +...+..|.+.|+ +.|..++..+...+
T Consensus 5 k~r~~WT~elH~~Fv~Av~-------------~LG~--~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVD-------------HLGV--ERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHH-------------HHCT--TTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHH-------------HhCC--CCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4567999999999999998 6672 4456899999997 78999998776543
No 97
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=62.64 E-value=10 Score=32.94 Aligned_cols=16 Identities=19% Similarity=0.171 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHHHHH
Q 014781 141 FSLEEDEMIKKAVINY 156 (419)
Q Consensus 141 wT~eEd~~L~~aV~~y 156 (419)
+|+++...|..+...|
T Consensus 51 ls~~~~~~l~~~F~~~ 66 (196)
T 3dtp_E 51 FTQHQVQEFKEAFQLI 66 (196)
T ss_dssp SCTTTHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4555555555555554
No 98
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=57.12 E-value=29 Score=30.73 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=30.4
Q ss_pred hhHHHHHhhCCCCCHH---HHHHHHHHhhC-C-CCCCCCCHHHHHHHH--------HHHHHhC
Q 014781 181 HCWKEIGAALPWRPCE---SIYYRAHILFE-R-DENRKWTPEELELVR--------KFYEKHG 230 (419)
Q Consensus 181 ~~W~~IA~~LP~R~~~---s~y~r~~~~~~-~-~~kg~WT~EEDe~L~--------~lv~~~G 230 (419)
.|=..|-.+|-+.+.. .+...+..-.. | +..|-||+|+|+.|. +|..+||
T Consensus 79 ~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG 141 (168)
T 3cz6_A 79 NFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG 141 (168)
T ss_dssp HHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC
T ss_pred ccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC
Confidence 3444555566444322 44444443333 4 689999999999875 4666666
No 99
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=56.04 E-value=9.3 Score=36.57 Aligned_cols=29 Identities=31% Similarity=0.374 Sum_probs=25.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC-CHhhHHh
Q 014781 210 ENRKWTPEELELVRKFYEKHGS-DWKTMAD 238 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G~-~W~~IA~ 238 (419)
-...|+.+||..|+--|.+||- +|..|..
T Consensus 167 W~c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 167 WSSNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4467999999999999999995 9999975
No 100
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=53.97 E-value=92 Score=25.64 Aligned_cols=65 Identities=11% Similarity=-0.006 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhc-----ccCCCC----CCCCCHHHHHHHHHHHH
Q 014781 212 RKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRI-----KLPNQK----KGQWSQEEYQKLFALVN 277 (419)
Q Consensus 212 g~WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~-----l~~~~~----kg~WT~EED~~L~~lV~ 277 (419)
...|.++-..++.++. .|..-..||..||.+...|+.-...+ +.+... ...-|.+....|..++.
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4689999999999884 68899999999998776665332222 122111 23478887888888776
No 101
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=52.33 E-value=37 Score=21.73 Aligned_cols=42 Identities=7% Similarity=0.068 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhc
Q 014781 212 RKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRI 254 (419)
Q Consensus 212 g~WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~ 254 (419)
...|+++-..++.++ ..|.....||..||-+...|+.....+
T Consensus 4 ~~l~~~~~~~i~~~~-~~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 4 SALSDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 356778777777776 457899999999999888887654443
No 102
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=49.84 E-value=15 Score=26.31 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcc
Q 014781 214 WTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 214 WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
.++.+- .++.++-..|-.+..||..||-|+..|+.+..+..
T Consensus 16 L~~~~r-~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 16 LTTDQR-EALLLTQLLGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp SCHHHH-HHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 554444 44445446688999999999999999988777654
No 103
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=45.98 E-value=57 Score=28.56 Aligned_cols=51 Identities=14% Similarity=0.080 Sum_probs=38.2
Q ss_pred HHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHH
Q 014781 220 ELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVN 277 (419)
Q Consensus 220 e~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l~~~~~kg~WT~EED~~L~~lV~ 277 (419)
+.|+.+-..-|-.|..||+.+|+|+.-+-.-.+ ....-|.|+-.+|.+++.
T Consensus 16 ~~I~~AK~~KGLTwe~IAe~iG~S~v~vtaa~l-------GQ~~ls~e~A~kLa~~Lg 66 (156)
T 1dw9_A 16 DAILLSKAKKDLSFAEIADGTGLAEAFVTAALL-------GQQALPADAARLVGAKLD 66 (156)
T ss_dssp HHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHT-------TSSCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHc-------CCCCCCHHHHHHHHHHhC
Confidence 566777777788999999999999887765433 234667788778777664
No 104
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=45.81 E-value=18 Score=26.57 Aligned_cols=41 Identities=7% Similarity=0.140 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHH----hCCCHhhHHhhhCCChHHHHHHhhhcc
Q 014781 214 WTPEELELVRKFYEK----HGSDWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 214 WT~EEDe~L~~lv~~----~G~~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
-++.|-+.|. +.-- .|-.+.+||..||-|...|+.+..+.+
T Consensus 11 L~~~er~il~-l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~ 55 (73)
T 1ku3_A 11 LSEREAMVLK-MRKGLIDGREHTLEEVGAYFGVTRERIRQIENKAL 55 (73)
T ss_dssp SCHHHHHHHH-HHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444 4333 577999999999999999988776654
No 105
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=44.79 E-value=19 Score=30.95 Aligned_cols=40 Identities=5% Similarity=0.050 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhCC-CHhhHHhhhCCChHHHHHHhhhccc
Q 014781 217 EELELVRKFYEKHGS-DWKTMADTLGKHRFHVKDAWRRIKL 256 (419)
Q Consensus 217 EEDe~L~~lv~~~G~-~W~~IA~~LGRs~~qcr~Rwr~~l~ 256 (419)
+-|..|+.+....|. .|..||+.+|=|+..|+.|.+++..
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEE 43 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 457778888887776 9999999999999999999998864
No 106
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=41.52 E-value=21 Score=29.93 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=34.7
Q ss_pred CCHhhHHhhhC--C----ChHHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHH
Q 014781 231 SDWKTMADTLG--K----HRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFALVN 277 (419)
Q Consensus 231 ~~W~~IA~~LG--R----s~~qcr~Rwr~~l~~~~~kg~WT~EED~~L~~lV~ 277 (419)
+.|..||..|| . .+..++..|.++|.+ --..+++|-..|.+-|.
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~---YE~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS---YDSLSPEEHRRLEKEVL 113 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH---HHHCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH---HHCcCHHHHhhHHHHHH
Confidence 49999999996 3 246788889998864 22488899999999887
No 107
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=41.32 E-value=1.5e+02 Score=24.59 Aligned_cols=65 Identities=11% Similarity=-0.025 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcc-----cCCCC----CCCCCHHHHHHHHHHHH
Q 014781 212 RKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIK-----LPNQK----KGQWSQEEYQKLFALVN 277 (419)
Q Consensus 212 g~WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l-----~~~~~----kg~WT~EED~~L~~lV~ 277 (419)
...|.++-..++.++. .|.....||..||.+...|+.-.+.+. .+... ....|.+..+.|..++.
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~s~~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 97 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKR 97 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTCCHHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 4689999989988884 688999999999987776654333221 12111 23567777777777775
No 108
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=38.93 E-value=20 Score=25.86 Aligned_cols=27 Identities=4% Similarity=0.042 Sum_probs=23.6
Q ss_pred hCCCHhhHHhhhCCChHHHHHHhhhcc
Q 014781 229 HGSDWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 229 ~G~~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
.|..+.+||..||-|...|+.+..+.+
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~ 50 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKAL 50 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 477999999999999999998877665
No 109
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=38.75 E-value=1.5e+02 Score=23.66 Aligned_cols=89 Identities=8% Similarity=0.029 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccCcchhhhhHHHHHhhCCCCCHHHHHHHHHHhhC------CCCCC
Q 014781 139 KRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFE------RDENR 212 (419)
Q Consensus 139 g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~~------~~~kg 212 (419)
..+|.++...+..++ ..|++ -..||..| +.+...||..+.+... ++...
T Consensus 5 ~~~s~~~r~~i~~~~-----~~G~s-------------------~~~ia~~l-gis~~Tv~r~~~~~~~~g~~~~~gr~~ 59 (141)
T 1u78_A 5 SALSDTERAQLDVMK-----LLNVS-------------------LHEMSRKI-SRSRHCIRVYLKDPVSYGTSKRAPRRK 59 (141)
T ss_dssp CCCCHHHHHHHHHHH-----HTTCC-------------------HHHHHHHH-TCCHHHHHHHHHSGGGTTCCCCCCCCC
T ss_pred ccCCHHHHHHHHHHH-----HcCCC-------------------HHHHHHHH-CcCHHHHHHHHHcccccCCcCCCCCCC
Confidence 467888876665543 13433 45778777 6888888876654322 12345
Q ss_pred CCCHHHHHHHHHHHHHhCCCHhhHHhhhC--CChHHHHHHhh
Q 014781 213 KWTPEELELVRKFYEKHGSDWKTMADTLG--KHRFHVKDAWR 252 (419)
Q Consensus 213 ~WT~EEDe~L~~lv~~~G~~W~~IA~~LG--Rs~~qcr~Rwr 252 (419)
..|++++..|..+...-+..-..|+..|| -+...|+...+
T Consensus 60 ~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~ 101 (141)
T 1u78_A 60 ALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIK 101 (141)
T ss_dssp SSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHH
Confidence 68999999888883332346678888887 56666654443
No 110
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=35.34 E-value=24 Score=33.63 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=18.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 014781 138 GKRFSLEEDEMIKKAVINYIE 158 (419)
Q Consensus 138 ~g~wT~eEd~~L~~aV~~y~~ 158 (419)
.+.||..|...|..++.+|+.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~ 23 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGN 23 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHhCC
Confidence 357999999999999999974
No 111
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=34.61 E-value=60 Score=23.23 Aligned_cols=38 Identities=13% Similarity=0.122 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhc
Q 014781 217 EELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRI 254 (419)
Q Consensus 217 EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~ 254 (419)
-|.+.|..+...++.+....|..||=+...++.+-+.+
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~LGisr~tL~rklkk~ 56 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIKSL 56 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 36778888999999999999999998888777776655
No 112
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=33.92 E-value=29 Score=28.50 Aligned_cols=26 Identities=23% Similarity=0.437 Sum_probs=20.6
Q ss_pred CCHhhHHhhhC-CChHHHHHHhhhccc
Q 014781 231 SDWKTMADTLG-KHRFHVKDAWRRIKL 256 (419)
Q Consensus 231 ~~W~~IA~~LG-Rs~~qcr~Rwr~~l~ 256 (419)
..|..||..|| -.+..++..|.++|.
T Consensus 71 ~~W~~Va~~lg~~~~~~Lr~~Y~k~L~ 97 (116)
T 2li6_A 71 QQWSMVAQRLQISDYQQLESIYFRILL 97 (116)
T ss_dssp TCHHHHHHHHTSCCTTHHHHHHHHHHS
T ss_pred CcHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 48999999997 346778888887765
No 113
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=33.37 E-value=1.7e+02 Score=24.17 Aligned_cols=86 Identities=15% Similarity=0.128 Sum_probs=51.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccCcchhhhhHHHHHhhCCCCCHHHHHHHHHHhhC-CCCCCCCCH
Q 014781 138 GKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILFE-RDENRKWTP 216 (419)
Q Consensus 138 ~g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~~-~~~kg~WT~ 216 (419)
-|..|++|.+.|...+.. .+++..++..++..-.......+-..+.. ++ ..+-..-..-++. -...|.-++
T Consensus 32 DG~v~~~E~~~l~~~l~~----lgl~~~e~~~l~~~~~~~~~~~~~~~~~~-~~---~e~r~~ll~~L~~IA~ADG~i~~ 103 (133)
T 2h5n_A 32 DGKIKPAEIAVMTREFMR----FGILQDQVDLLLKASDSIEASQAVALIAR-MD---EERKKYVASYLGVIMASDGDIDD 103 (133)
T ss_dssp TSCCCHHHHHHHHHHHGG----GTCCHHHHHHHHHHHTTSCHHHHHHHHHT-SC---HHHHHHHHHHHHHHSCBTTBCCH
T ss_pred cCCCCHHHHHHHHHHHHH----hCcCHHHHHHHHHHHHhccHHHHHHHHHc-CC---HHHHHHHHHHHHHHhhcCCCCCH
Confidence 578999999999999877 47887766666542111111222222211 21 2222222222222 246799999
Q ss_pred HHHHHHHHHHHHhCC
Q 014781 217 EELELVRKFYEKHGS 231 (419)
Q Consensus 217 EEDe~L~~lv~~~G~ 231 (419)
.|+..|.+.....|-
T Consensus 104 ~E~~lLr~ia~~Lgl 118 (133)
T 2h5n_A 104 NELALWTLISTLCGL 118 (133)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999998887773
No 114
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=33.15 E-value=1.7e+02 Score=22.63 Aligned_cols=65 Identities=11% Similarity=0.004 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHH---HHhhhc--ccCCC----CCCCCCHHHHHHHHHHHH
Q 014781 212 RKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVK---DAWRRI--KLPNQ----KKGQWSQEEYQKLFALVN 277 (419)
Q Consensus 212 g~WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr---~Rwr~~--l~~~~----~kg~WT~EED~~L~~lV~ 277 (419)
.+.|.++-..++.++. .|..-..||..||.+...|+ .+|+.. +.+.. .....|+++...|..++.
T Consensus 16 ~~~s~~~r~~i~~~~~-~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~~ 89 (128)
T 1pdn_C 16 RPLPNNIRLKIVEMAA-DGIRPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKR 89 (128)
T ss_dssp SCCCHHHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTT
T ss_pred CcCCHHHHHHHHHHHH-cCCCHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHHH
Confidence 4689999999988885 68899999999998776654 333322 11211 223467766666666654
No 115
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=31.88 E-value=1.2e+02 Score=25.86 Aligned_cols=83 Identities=12% Similarity=0.025 Sum_probs=49.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccCcchhhhhHHHHHhhCCCCC--HH-HHHHHHHHhhCCCCCCCC
Q 014781 138 GKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRP--CE-SIYYRAHILFERDENRKW 214 (419)
Q Consensus 138 ~g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP~R~--~~-s~y~r~~~~~~~~~kg~W 214 (419)
-|..|++|.+.|...+.. .+++.++...+........ -..+...++... .. -+..-|.-.+ ..|.-
T Consensus 43 DG~v~~~E~~~i~~~~~~----~~l~~~~~~~l~~~~~~~~----l~~~~~~i~~~~~~~~~~l~~l~~vA~---ADG~~ 111 (161)
T 2ou3_A 43 DGVISPEEKDWALGFCAS----WGVADWVIEDLKTYEADEA----LEEVIARSPQVSMAQRDILLSAIWVSA---ADGEL 111 (161)
T ss_dssp SSCCCHHHHHHHHHHHHH----TTCCHHHHHHHHHCCCCSC----HHHHHTTCTTGGGCHHHHHHHHHHHHH---TTSSC
T ss_pred cCCCCHHHHHHHHHHHHH----cCCCHHHHHHHhhccCCCC----HHHHHHHHHHHhccHHHHHHHHHHHHH---HcCCC
Confidence 588999999999997765 4666655554444111111 233444443111 11 2222333333 34889
Q ss_pred CHHHHHHHHHHHHHhCC
Q 014781 215 TPEELELVRKFYEKHGS 231 (419)
Q Consensus 215 T~EEDe~L~~lv~~~G~ 231 (419)
++.|+..|.++....|-
T Consensus 112 ~~~E~~~L~~iA~~Lgl 128 (161)
T 2ou3_A 112 HEKEKAKIRKMATILGI 128 (161)
T ss_dssp CHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 99999999999888875
No 116
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=29.93 E-value=48 Score=28.42 Aligned_cols=39 Identities=26% Similarity=0.245 Sum_probs=28.5
Q ss_pred hhhHHHHHhhCCCCCHHHHHHHHHHhhCCCCCCCCCHHHHHHHHH
Q 014781 180 KHCWKEIGAALPWRPCESIYYRAHILFERDENRKWTPEELELVRK 224 (419)
Q Consensus 180 ~~~W~~IA~~LP~R~~~s~y~r~~~~~~~~~kg~WT~EEDe~L~~ 224 (419)
.-+-..||..+-+.++..|+..+.- ..-+|+||++.+++
T Consensus 116 d~~c~~va~~i~gkt~eeir~~f~I------~~d~t~eEe~~ir~ 154 (159)
T 2ast_A 116 DVTCKTVANMIKGKTPEEIRKTFNI------KNDFTEEEEAQVRK 154 (159)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHTTC------CCCSCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHcCC------CCCCCHHHHHHHHH
Confidence 3456678888888999887776432 23499999988765
No 117
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=29.14 E-value=2.2e+02 Score=22.63 Aligned_cols=88 Identities=7% Similarity=0.054 Sum_probs=56.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcccC-----CCCCCCCCHHHHHHHHHHHHHHHHhhhhH
Q 014781 212 RKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKLP-----NQKKGQWSQEEYQKLFALVNMDLRMKASE 286 (419)
Q Consensus 212 g~WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l~~-----~~~kg~WT~EED~~L~~lV~~~l~~~~~~ 286 (419)
...|.++-..++.++ .-|..-..||..||.+...|+.-....... .......|++++..|+.+..
T Consensus 5 ~~~s~~~r~~i~~~~-~~G~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~--------- 74 (141)
T 1u78_A 5 SALSDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAAS--------- 74 (141)
T ss_dssp CCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHH---------
T ss_pred ccCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHh---------
Confidence 568888888888887 468899999999998888776433332211 12233578888877776632
Q ss_pred HHhhhcCCcCCCCchhHhhhhcC-CCCHHHHHH
Q 014781 287 EKRTKHGMLRDNISWEAISEKLS-TRTNAICCM 318 (419)
Q Consensus 287 e~~~~~G~~~~~i~W~~IS~~m~-~RS~~QCr~ 318 (419)
.+. .+=..|+..++ .-|...++.
T Consensus 75 -----~~~----~s~~~i~~~lg~~~s~~tV~r 98 (141)
T 1u78_A 75 -----NSC----KTARDIRNELQLSASKRTILN 98 (141)
T ss_dssp -----HCC----CCHHHHHHHTTCCSCHHHHHH
T ss_pred -----CCC----CCHHHHHHHHCCCccHHHHHH
Confidence 111 23467777776 345555543
No 118
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=28.42 E-value=71 Score=27.65 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCC-CHhhHHhhhCCChHHHHHHhhhccc
Q 014781 217 EELELVRKFYEKHGS-DWKTMADTLGKHRFHVKDAWRRIKL 256 (419)
Q Consensus 217 EEDe~L~~lv~~~G~-~W~~IA~~LGRs~~qcr~Rwr~~l~ 256 (419)
+-|..|+.+....|. .+..||+.+|-|+..|+.|.+.+..
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~ 67 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE 67 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 445667777777665 9999999999999999999988864
No 119
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=28.18 E-value=48 Score=25.30 Aligned_cols=39 Identities=21% Similarity=0.033 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcc
Q 014781 217 EELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 217 EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
+.+..++.++-..|-.-..||..||-|...|+.+..+.+
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344445555555677899999999999999998877764
No 120
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=27.49 E-value=84 Score=22.31 Aligned_cols=43 Identities=16% Similarity=0.065 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhcc
Q 014781 211 NRKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 211 kg~WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
-...|+.|-+.|..+ ..|..-..||..||-|...|+.+..+..
T Consensus 9 ~~~L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 9 KPLLTKREREVFELL--VQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCCCCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 356888888777664 5677999999999999999998887765
No 121
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=26.17 E-value=47 Score=26.70 Aligned_cols=27 Identities=30% Similarity=0.623 Sum_probs=20.5
Q ss_pred CCHhhHHhhhCC------ChHHHHHHhhhcccC
Q 014781 231 SDWKTMADTLGK------HRFHVKDAWRRIKLP 257 (419)
Q Consensus 231 ~~W~~IA~~LGR------s~~qcr~Rwr~~l~~ 257 (419)
..|..||..||= .+.+++..|.++|.+
T Consensus 55 ~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 55 RQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp TTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred CcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 499999999972 235778888888754
No 122
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=26.03 E-value=79 Score=26.24 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCC-CHhhHHhhhCCChHHHHHHhhhcc
Q 014781 217 EELELVRKFYEKHGS-DWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 217 EEDe~L~~lv~~~G~-~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
+-|..|+.+....|. .+..||+.+|=|+..|+.+...+.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~ 48 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLK 48 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345566677777665 999999999999999999988875
No 123
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=25.90 E-value=45 Score=26.77 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=18.9
Q ss_pred CCHhhHHhhhCCC-----hHHHHHHhhhccc
Q 014781 231 SDWKTMADTLGKH-----RFHVKDAWRRIKL 256 (419)
Q Consensus 231 ~~W~~IA~~LGRs-----~~qcr~Rwr~~l~ 256 (419)
..|..||..||=. +.+++..|.++|.
T Consensus 66 ~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~ 96 (107)
T 2lm1_A 66 RKWAKVANRMQYPSSKSVGATLKAHYERILH 96 (107)
T ss_dssp TTHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 3899999999732 3567777777653
No 124
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=25.52 E-value=58 Score=24.70 Aligned_cols=27 Identities=4% Similarity=0.025 Sum_probs=23.1
Q ss_pred hCCCHhhHHhhhCCChHHHHHHhhhcc
Q 014781 229 HGSDWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 229 ~G~~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
.|-.+..||..||-|...|+.+..+.+
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~ 63 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKAL 63 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467999999999999999998877665
No 125
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=25.01 E-value=94 Score=20.03 Aligned_cols=39 Identities=15% Similarity=0.175 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhh
Q 014781 213 KWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWR 252 (419)
Q Consensus 213 ~WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr 252 (419)
..|+++...+..++. .|..-..||..+|-+...++....
T Consensus 5 ~~~~~~~~~i~~l~~-~g~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 5 AINKHEQEQISRLLE-KGHPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp SSCTTHHHHHHHHHH-TTCCHHHHHHTTSCCHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHH-cCCCHHHHHHHHCCCHHHHHHHHH
Confidence 456677677777754 577889999999988877765433
No 126
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=24.87 E-value=85 Score=26.14 Aligned_cols=39 Identities=10% Similarity=0.219 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhCC-CHhhHHhhhCCChHHHHHHhhhccc
Q 014781 218 ELELVRKFYEKHGS-DWKTMADTLGKHRFHVKDAWRRIKL 256 (419)
Q Consensus 218 EDe~L~~lv~~~G~-~W~~IA~~LGRs~~qcr~Rwr~~l~ 256 (419)
-|..|+.+....|. .+..||+.+|-|+..|+.+...+..
T Consensus 8 ~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (151)
T 2cyy_A 8 IDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRE 47 (151)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34566666666665 9999999999999999999888753
No 127
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=24.68 E-value=2.8e+02 Score=22.50 Aligned_cols=79 Identities=11% Similarity=0.076 Sum_probs=50.2
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCCcchhhhhhhccCcchhhhhHHHHHhhCCCCCHHHHHHHHHHhh-----CC---
Q 014781 137 RGKRFSLEEDEMIKKAVINYIEAHRLGEDGLNMVLHCRSYPEIKHCWKEIGAALPWRPCESIYYRAHILF-----ER--- 208 (419)
Q Consensus 137 k~g~wT~eEd~~L~~aV~~y~~~~~l~~e~l~~l~~~~~~~e~~~~W~~IA~~LP~R~~~s~y~r~~~~~-----~~--- 208 (419)
.+..+|.++...+..++. .|++ ...||..| +.+...|+..+.+.. .+
T Consensus 29 ~~~~~s~e~r~~iv~~~~-----~G~s-------------------~~~iA~~l-gis~~TV~rw~~~~~~~G~~~~~~r 83 (149)
T 1k78_A 29 NGRPLPDVVRQRIVELAH-----QGVR-------------------PCDISRQL-RVSHGCVSKILGRYYETGSIKPGVI 83 (149)
T ss_dssp TTSCCCHHHHHHHHHHHH-----TTCC-------------------HHHHHHHH-TCCHHHHHHHHHHHHHHSCCCCCCC
T ss_pred CCCCCCHHHHHHHHHHHH-----cCCC-------------------HHHHHHHH-CcCHHHHHHHHHHHHHcCCCCccCC
Confidence 455799888776655532 3443 45778777 677777776554421 11
Q ss_pred -C-CCCCCCHHHHHHHHHHHHHhCC-CHhhHHhhh
Q 014781 209 -D-ENRKWTPEELELVRKFYEKHGS-DWKTMADTL 240 (419)
Q Consensus 209 -~-~kg~WT~EEDe~L~~lv~~~G~-~W~~IA~~L 240 (419)
+ .....|++..+.|..++...+. .-..|+..|
T Consensus 84 ~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l 118 (149)
T 1k78_A 84 GGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRL 118 (149)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 1 1345899999999999877542 445666666
No 128
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.47 E-value=51 Score=27.34 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=18.3
Q ss_pred CCHhhHHhhhCCC-----hHHHHHHhhhccc
Q 014781 231 SDWKTMADTLGKH-----RFHVKDAWRRIKL 256 (419)
Q Consensus 231 ~~W~~IA~~LGRs-----~~qcr~Rwr~~l~ 256 (419)
..|..||..||=. +..++..|.++|.
T Consensus 64 k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~ 94 (122)
T 2eqy_A 64 RKWTKIATKMGFAPGKAVGSHIRGHYERILN 94 (122)
T ss_dssp TTHHHHHHHTTCCSSSHHHHHHHHHHHHTHH
T ss_pred CcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 4899999999732 3566666776653
No 129
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=24.12 E-value=60 Score=27.04 Aligned_cols=37 Identities=14% Similarity=0.349 Sum_probs=26.3
Q ss_pred HHHHHHHHhC--------CCHhhHHhhhC--CC----hHHHHHHhhhcccC
Q 014781 221 LVRKFYEKHG--------SDWKTMADTLG--KH----RFHVKDAWRRIKLP 257 (419)
Q Consensus 221 ~L~~lv~~~G--------~~W~~IA~~LG--Rs----~~qcr~Rwr~~l~~ 257 (419)
.|-.+|..+| ..|..||..|| .+ +..++..|.++|.+
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4555666665 38999999997 22 46778888888753
No 130
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=23.61 E-value=65 Score=26.45 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=24.9
Q ss_pred HHHHHHHHhC--------CCHhhHHhhhCCC-----hHHHHHHhhhccc
Q 014781 221 LVRKFYEKHG--------SDWKTMADTLGKH-----RFHVKDAWRRIKL 256 (419)
Q Consensus 221 ~L~~lv~~~G--------~~W~~IA~~LGRs-----~~qcr~Rwr~~l~ 256 (419)
.|..+|..+| ..|..||..||=. +.+++..|.++|.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~ 92 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVY 92 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 3445555555 3899999999732 4677777887764
No 131
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=23.03 E-value=91 Score=26.47 Aligned_cols=43 Identities=7% Similarity=0.182 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhcCCcCCCCchhHhhhhcCCCCHHHHHHHHHHhcCCC
Q 014781 267 EEYQKLFALVNMDLRMKASEEKRTKHGMLRDNISWEAISEKLSTRTNAICCMKWYDQLTSP 327 (419)
Q Consensus 267 EED~~L~~lV~~~l~~~~~~e~~~~~G~~~~~i~W~~IS~~m~~RS~~QCr~RW~~~L~~~ 327 (419)
+-|.+|+.+++ ..|. ++|..||+.+| =|...|+.|+..+....
T Consensus 3 ~~d~~il~~L~-------------~~~~----~s~~~la~~lg-~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQ-------------EDST----LAVADLAKKVG-LSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHT-------------TCSC----SCHHHHHHHHT-CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-------------HCCC----CCHHHHHHHHC-cCHHHHHHHHHHHHHCC
Confidence 45677788876 4554 79999999998 69999999999876433
No 132
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=22.63 E-value=1e+02 Score=23.71 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhc
Q 014781 218 ELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRI 254 (419)
Q Consensus 218 EDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~ 254 (419)
|.+.|..+...+|.+....|+.||=+...++.+-+.+
T Consensus 52 E~~~i~~aL~~~~gn~~~aA~~LGIsr~tL~rklkk~ 88 (91)
T 1ntc_A 52 ERTLLTTALRHTQGHKQEAARLLGWGAATLTAKLKEL 88 (91)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 6678888999999999999999998877777665543
No 133
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=22.05 E-value=1.1e+02 Score=23.44 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=36.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhccc
Q 014781 210 ENRKWTPEELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRIKL 256 (419)
Q Consensus 210 ~kg~WT~EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~l~ 256 (419)
....-|+.|-+.|.-++ .|..-..||..||-+...|+.+..+++.
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34568888888887766 7889999999999999999998888753
No 134
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=21.89 E-value=88 Score=26.85 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=0.0
Q ss_pred hhHHhhh-CCChHHHHHHhhhcccCCCCCCCCCHHHHHHHHH
Q 014781 234 KTMADTL-GKHRFHVKDAWRRIKLPNQKKGQWSQEEYQKLFA 274 (419)
Q Consensus 234 ~~IA~~L-GRs~~qcr~Rwr~~l~~~~~kg~WT~EED~~L~~ 274 (419)
..||..+ |+|+.+||.. -.-..-+|+||++.+.+
T Consensus 119 ~~vA~~ikgkt~eeir~~-------f~I~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIKGKTPEEIRTT-------FNIKNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTTTCCHHHHHHH-------TTCCCCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHH-------cCCCCCCCHHHHHHHHH
No 135
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=21.81 E-value=58 Score=25.56 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=19.2
Q ss_pred CCHhhHHhhhC--C---ChHHHHHHhhhccc
Q 014781 231 SDWKTMADTLG--K---HRFHVKDAWRRIKL 256 (419)
Q Consensus 231 ~~W~~IA~~LG--R---s~~qcr~Rwr~~l~ 256 (419)
..|..||..|| . .+.+++..|.++|.
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 49999999997 2 24577777777764
No 136
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=21.11 E-value=98 Score=25.70 Aligned_cols=38 Identities=8% Similarity=0.041 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhCC-CHhhHHhhhCCChHHHHHHhhhcc
Q 014781 218 ELELVRKFYEKHGS-DWKTMADTLGKHRFHVKDAWRRIK 255 (419)
Q Consensus 218 EDe~L~~lv~~~G~-~W~~IA~~LGRs~~qcr~Rwr~~l 255 (419)
-|..|+.+....|. .+..||+.+|-|+..|+.+...+.
T Consensus 9 ~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~ 47 (152)
T 2cg4_A 9 LDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMK 47 (152)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35566677776665 999999999999999999988774
No 137
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=20.66 E-value=1.3e+02 Score=23.01 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhCCCHhhHHhhhCCChHHHHHHhhhc
Q 014781 217 EELELVRKFYEKHGSDWKTMADTLGKHRFHVKDAWRRI 254 (419)
Q Consensus 217 EEDe~L~~lv~~~G~~W~~IA~~LGRs~~qcr~Rwr~~ 254 (419)
-|.+.|.++...++.+....|+.||=+...++.+-+.+
T Consensus 41 ~Er~~I~~aL~~~~GN~s~AA~~LGISR~TLyrKLkk~ 78 (81)
T 1umq_A 41 VRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRILAKR 78 (81)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHHHHHHh
Confidence 46677888899999999999999998877777665543
Done!