Query 014782
Match_columns 419
No_of_seqs 285 out of 2028
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 08:28:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00343 triose or hexose phos 100.0 8.3E-38 1.8E-42 306.4 37.5 295 113-408 46-350 (350)
2 TIGR00817 tpt Tpt phosphate/ph 100.0 1.2E-37 2.5E-42 300.5 33.1 295 116-412 2-299 (302)
3 KOG1441 Glucose-6-phosphate/ph 100.0 1.3E-36 2.8E-41 287.3 14.4 297 112-414 13-315 (316)
4 PLN00411 nodulin MtN21 family 100.0 1.1E-28 2.3E-33 241.4 32.0 289 114-412 11-334 (358)
5 PRK11689 aromatic amino acid e 100.0 4.2E-27 9.1E-32 226.1 32.5 271 112-409 4-290 (295)
6 PF08449 UAA: UAA transporter 100.0 1.7E-26 3.8E-31 222.6 31.3 281 124-411 8-302 (303)
7 PRK11272 putative DMT superfam 100.0 5.4E-26 1.2E-30 218.1 34.0 273 116-409 12-288 (292)
8 KOG1444 Nucleotide-sugar trans 100.0 2.3E-26 4.9E-31 212.9 26.5 294 117-415 13-309 (314)
9 PRK11453 O-acetylserine/cystei 100.0 3.7E-25 8.1E-30 213.1 32.0 276 115-409 7-290 (299)
10 PRK15430 putative chlorampheni 99.9 4E-25 8.8E-30 212.5 31.5 276 112-409 8-288 (296)
11 KOG1443 Predicted integral mem 99.9 3.4E-26 7.4E-31 208.6 22.2 298 108-406 8-315 (349)
12 PRK10532 threonine and homoser 99.9 1.5E-24 3.1E-29 208.3 34.4 272 113-413 13-288 (293)
13 TIGR00950 2A78 Carboxylate/Ami 99.9 1.1E-24 2.3E-29 205.6 29.4 254 129-401 2-259 (260)
14 PF06027 DUF914: Eukaryotic pr 99.9 1.1E-24 2.5E-29 208.8 27.9 270 130-410 27-309 (334)
15 TIGR03340 phn_DUF6 phosphonate 99.9 1.4E-21 3.1E-26 186.6 25.9 261 126-403 11-280 (281)
16 KOG1581 UDP-galactose transpor 99.9 6.4E-21 1.4E-25 174.4 26.3 294 111-413 9-320 (327)
17 KOG1442 GDP-fucose transporter 99.9 2.7E-23 5.9E-28 186.6 6.4 293 115-413 27-334 (347)
18 COG0697 RhaT Permeases of the 99.9 4.8E-19 1E-23 169.0 34.2 264 127-407 18-288 (292)
19 TIGR00688 rarD rarD protein. T 99.9 3.1E-19 6.6E-24 168.1 29.1 245 113-381 3-255 (256)
20 KOG1580 UDP-galactose transpor 99.9 2.6E-21 5.5E-26 170.3 13.3 274 127-409 24-316 (337)
21 KOG2765 Predicted membrane pro 99.9 1.8E-20 4E-25 175.7 17.1 225 179-409 159-393 (416)
22 COG5070 VRG4 Nucleotide-sugar 99.8 1.1E-19 2.5E-24 158.7 17.7 286 121-417 11-307 (309)
23 KOG1582 UDP-galactose transpor 99.8 2E-19 4.4E-24 161.5 18.9 290 110-408 37-334 (367)
24 COG5006 rhtA Threonine/homoser 99.8 1.7E-17 3.7E-22 148.1 26.2 255 133-411 29-287 (292)
25 KOG3912 Predicted integral mem 99.8 1.2E-17 2.6E-22 150.8 20.8 281 126-407 13-335 (372)
26 KOG4510 Permease of the drug/m 99.8 3.2E-20 6.9E-25 166.4 3.2 266 125-408 47-327 (346)
27 TIGR00776 RhaT RhaT L-rhamnose 99.8 3E-16 6.5E-21 150.2 28.6 263 116-407 5-289 (290)
28 COG2962 RarD Predicted permeas 99.7 8E-15 1.7E-19 134.6 29.3 277 112-411 7-288 (293)
29 KOG1583 UDP-N-acetylglucosamin 99.7 2.5E-17 5.4E-22 148.7 12.0 268 133-411 20-319 (330)
30 PF04142 Nuc_sug_transp: Nucle 99.7 1E-15 2.2E-20 142.1 21.7 212 176-397 14-244 (244)
31 PF03151 TPT: Triose-phosphate 99.7 4.4E-16 9.6E-21 134.8 15.9 148 259-406 1-153 (153)
32 KOG2234 Predicted UDP-galactos 99.7 4.4E-14 9.5E-19 133.4 27.4 276 127-411 26-327 (345)
33 KOG2766 Predicted membrane pro 99.5 1.7E-15 3.7E-20 135.4 2.1 261 129-408 31-301 (336)
34 PF00892 EamA: EamA-like trans 99.2 7.1E-11 1.5E-15 97.9 10.3 119 129-249 4-125 (126)
35 TIGR00803 nst UDP-galactose tr 99.2 1.3E-10 2.9E-15 106.9 11.4 193 203-404 2-222 (222)
36 KOG4314 Predicted carbohydrate 99.1 3.3E-10 7.2E-15 98.0 9.6 220 179-410 53-280 (290)
37 COG2510 Predicted membrane pro 99.1 7.7E-10 1.7E-14 89.2 11.1 123 127-250 14-139 (140)
38 PF00892 EamA: EamA-like trans 99.0 1.5E-09 3.3E-14 89.9 10.2 124 268-405 1-125 (126)
39 PF13536 EmrE: Multidrug resis 99.0 1.4E-09 2.9E-14 89.2 8.7 104 150-254 2-110 (113)
40 PF06800 Sugar_transport: Suga 99.0 7.1E-08 1.5E-12 89.7 20.6 208 177-403 43-268 (269)
41 COG2510 Predicted membrane pro 99.0 2.3E-09 4.9E-14 86.6 9.1 135 259-405 4-138 (140)
42 PRK15430 putative chlorampheni 98.8 4.6E-07 1E-11 87.2 17.5 139 255-405 5-144 (296)
43 TIGR03340 phn_DUF6 phosphonate 98.7 6.1E-07 1.3E-11 85.7 15.8 132 260-406 3-135 (281)
44 TIGR00950 2A78 Carboxylate/Ami 98.7 9.9E-07 2.1E-11 82.9 16.7 128 114-246 130-260 (260)
45 TIGR00688 rarD rarD protein. T 98.7 1E-06 2.2E-11 82.8 16.7 139 258-405 2-141 (256)
46 PLN00411 nodulin MtN21 family 98.5 6.3E-06 1.4E-10 81.2 16.2 135 259-406 14-156 (358)
47 PF05653 Mg_trans_NIPA: Magnes 98.4 1.1E-05 2.5E-10 77.3 16.0 62 188-249 59-121 (300)
48 PRK10532 threonine and homoser 98.4 2E-05 4.3E-10 75.7 16.9 121 126-249 158-280 (293)
49 PRK11689 aromatic amino acid e 98.4 1.1E-05 2.3E-10 77.7 14.8 121 126-250 166-287 (295)
50 PRK11272 putative DMT superfam 98.3 2.1E-05 4.6E-10 75.5 16.0 120 129-250 163-285 (292)
51 PRK02971 4-amino-4-deoxy-L-ara 98.3 2.8E-05 6E-10 64.9 14.3 123 258-410 2-126 (129)
52 PRK15051 4-amino-4-deoxy-L-ara 98.3 5.2E-06 1.1E-10 67.5 9.4 63 187-249 45-108 (111)
53 PRK13499 rhamnose-proton sympo 98.2 0.00089 1.9E-08 65.1 25.0 285 115-407 6-342 (345)
54 COG2962 RarD Predicted permeas 98.1 0.00016 3.5E-09 67.3 15.6 140 257-407 6-145 (293)
55 PRK11453 O-acetylserine/cystei 98.1 0.00018 3.9E-09 69.3 16.7 125 126-250 153-287 (299)
56 TIGR00776 RhaT RhaT L-rhamnose 98.0 6.3E-05 1.4E-09 72.1 12.8 132 259-408 2-138 (290)
57 PTZ00343 triose or hexose phos 98.0 0.00017 3.7E-09 71.0 16.0 135 257-405 48-185 (350)
58 PF03151 TPT: Triose-phosphate 98.0 0.00033 7.2E-09 60.1 15.8 128 121-248 5-151 (153)
59 TIGR00817 tpt Tpt phosphate/ph 97.9 0.0003 6.6E-09 67.8 15.3 124 269-405 13-136 (302)
60 PF13536 EmrE: Multidrug resis 97.9 0.00039 8.5E-09 56.7 13.3 72 336-408 36-108 (113)
61 KOG2922 Uncharacterized conser 97.9 0.00012 2.6E-09 68.9 10.7 207 187-410 72-310 (335)
62 COG4975 GlcU Putative glucose 97.8 8.4E-06 1.8E-10 73.6 1.7 217 171-406 51-285 (288)
63 COG0697 RhaT Permeases of the 97.8 0.0013 2.9E-08 62.2 16.6 119 128-250 166-287 (292)
64 PRK15051 4-amino-4-deoxy-L-ara 97.7 0.0003 6.6E-09 57.1 9.7 59 348-406 51-109 (111)
65 PF08449 UAA: UAA transporter 97.7 0.00074 1.6E-08 65.2 14.0 130 269-411 11-141 (303)
66 PRK02971 4-amino-4-deoxy-L-ara 97.6 0.00041 8.8E-09 57.9 8.8 69 183-251 52-123 (129)
67 PRK10452 multidrug efflux syst 97.4 0.0015 3.2E-08 53.7 9.9 68 183-250 34-103 (120)
68 COG5006 rhtA Threonine/homoser 97.4 0.0041 8.9E-08 56.8 13.0 119 126-246 158-278 (292)
69 PF06027 DUF914: Eukaryotic pr 97.4 0.0048 1E-07 60.0 14.3 71 337-407 82-152 (334)
70 PRK13499 rhamnose-proton sympo 97.3 0.0044 9.6E-08 60.2 13.5 138 257-408 6-155 (345)
71 PRK09541 emrE multidrug efflux 97.3 0.0028 6.1E-08 51.2 9.7 68 183-250 34-103 (110)
72 PRK10452 multidrug efflux syst 97.3 0.0024 5.1E-08 52.4 9.3 58 352-409 48-106 (120)
73 PRK11431 multidrug efflux syst 97.2 0.0047 1E-07 49.5 10.2 67 183-249 33-101 (105)
74 PRK10650 multidrug efflux syst 97.2 0.0067 1.5E-07 48.9 11.1 67 182-248 38-106 (109)
75 PF04657 DUF606: Protein of un 97.2 0.013 2.8E-07 49.6 13.2 131 259-403 2-138 (138)
76 PF04142 Nuc_sug_transp: Nucle 97.2 0.0016 3.4E-08 60.7 8.4 77 334-410 17-93 (244)
77 COG2076 EmrE Membrane transpor 97.1 0.0033 7.2E-08 49.9 8.6 68 183-250 34-103 (106)
78 PF06800 Sugar_transport: Suga 97.1 0.017 3.7E-07 54.1 14.1 112 129-246 151-267 (269)
79 PRK09541 emrE multidrug efflux 97.1 0.0057 1.2E-07 49.5 9.5 57 352-408 48-105 (110)
80 PRK10650 multidrug efflux syst 97.0 0.029 6.3E-07 45.2 12.6 53 353-405 54-107 (109)
81 PF04657 DUF606: Protein of un 96.7 0.084 1.8E-06 44.6 14.4 116 131-247 16-138 (138)
82 PRK11431 multidrug efflux syst 96.7 0.018 3.8E-07 46.2 9.3 54 353-406 48-102 (105)
83 COG2076 EmrE Membrane transpor 96.5 0.025 5.4E-07 45.0 8.8 55 353-407 49-104 (106)
84 PF00893 Multi_Drug_Res: Small 96.4 0.026 5.7E-07 44.2 8.4 58 184-241 34-93 (93)
85 KOG4510 Permease of the drug/m 96.3 0.0043 9.4E-08 57.0 3.8 118 129-247 204-322 (346)
86 KOG2234 Predicted UDP-galactos 96.2 0.27 5.8E-06 47.5 15.6 119 286-407 44-165 (345)
87 PF07857 DUF1632: CEO family ( 96.1 0.016 3.6E-07 53.9 6.8 132 259-411 1-139 (254)
88 TIGR00803 nst UDP-galactose tr 96.0 0.12 2.6E-06 47.3 12.2 65 183-247 156-221 (222)
89 PF05653 Mg_trans_NIPA: Magnes 96.0 0.028 6.1E-07 54.0 8.3 118 256-406 5-122 (300)
90 PF10639 UPF0546: Uncharacteri 95.9 0.024 5.2E-07 45.8 6.2 63 186-248 48-112 (113)
91 COG4975 GlcU Putative glucose 95.6 0.0053 1.1E-07 55.9 1.3 137 259-414 3-144 (288)
92 COG3238 Uncharacterized protei 95.6 0.49 1.1E-05 40.3 13.1 119 130-249 19-145 (150)
93 COG3238 Uncharacterized protei 95.5 0.52 1.1E-05 40.1 12.9 138 257-407 4-147 (150)
94 KOG1441 Glucose-6-phosphate/ph 95.1 0.073 1.6E-06 51.2 7.4 136 112-249 159-306 (316)
95 PF00893 Multi_Drug_Res: Small 94.8 0.13 2.9E-06 40.2 6.9 48 350-397 45-93 (93)
96 KOG1581 UDP-galactose transpor 94.7 0.59 1.3E-05 44.2 11.9 135 113-247 169-310 (327)
97 KOG1580 UDP-galactose transpor 94.5 0.091 2E-06 47.6 5.9 132 266-410 21-161 (337)
98 PF06379 RhaT: L-rhamnose-prot 94.0 1.8 4E-05 41.8 14.1 142 257-410 6-157 (344)
99 PF10639 UPF0546: Uncharacteri 89.5 0.52 1.1E-05 38.2 4.0 51 353-403 60-111 (113)
100 KOG2765 Predicted membrane pro 87.5 5.1 0.00011 39.2 9.9 127 126-252 257-392 (416)
101 KOG1444 Nucleotide-sugar trans 87.2 16 0.00035 35.0 12.9 132 260-405 14-148 (314)
102 KOG4314 Predicted carbohydrate 85.7 0.41 8.8E-06 42.3 1.3 61 347-407 66-126 (290)
103 PF06379 RhaT: L-rhamnose-prot 82.4 51 0.0011 32.1 20.6 227 175-406 69-340 (344)
104 PRK02237 hypothetical protein; 80.7 3.5 7.6E-05 32.8 4.7 48 361-408 60-107 (109)
105 KOG3912 Predicted integral mem 79.2 4.4 9.4E-05 38.1 5.5 66 341-406 93-158 (372)
106 COG5070 VRG4 Nucleotide-sugar 78.7 43 0.00093 30.6 11.4 99 146-244 186-290 (309)
107 KOG2922 Uncharacterized conser 77.7 0.7 1.5E-05 44.1 -0.1 118 256-406 19-136 (335)
108 PF02694 UPF0060: Uncharacteri 77.2 4.1 8.8E-05 32.4 4.1 48 361-408 58-105 (107)
109 PF05297 Herpes_LMP1: Herpesvi 65.8 2 4.3E-05 40.1 0.0 63 203-265 47-114 (381)
110 PF04342 DUF486: Protein of un 65.5 6.2 0.00013 31.3 2.7 29 375-403 77-105 (108)
111 PRK13108 prolipoprotein diacyl 64.7 1.7E+02 0.0037 29.9 19.1 23 386-408 254-276 (460)
112 TIGR00905 2A0302 transporter, 63.9 1.8E+02 0.0038 29.8 14.1 23 389-411 417-439 (473)
113 KOG4831 Unnamed protein [Funct 60.1 12 0.00026 29.7 3.3 62 188-249 61-124 (125)
114 COG3169 Uncharacterized protei 59.7 25 0.00054 27.5 5.0 30 375-404 84-113 (116)
115 PRK02237 hypothetical protein; 59.2 24 0.00052 28.2 5.0 38 214-251 68-106 (109)
116 PF02694 UPF0060: Uncharacteri 58.4 27 0.00058 27.9 5.1 38 214-251 66-104 (107)
117 TIGR03810 arg_ornith_anti argi 57.1 2.3E+02 0.0049 28.9 13.3 23 389-411 412-434 (468)
118 PF07168 Ureide_permease: Urei 56.8 4.4 9.5E-05 38.5 0.6 137 264-406 2-146 (336)
119 KOG2766 Predicted membrane pro 55.7 4.6 0.0001 37.4 0.5 64 342-405 86-149 (336)
120 TIGR02865 spore_II_E stage II 51.4 3.4E+02 0.0074 29.9 14.0 43 206-248 11-54 (764)
121 COG1742 Uncharacterized conser 51.3 84 0.0018 25.0 6.7 37 215-251 68-105 (109)
122 KOG1582 UDP-galactose transpor 51.0 1.7E+02 0.0037 27.7 9.7 74 181-254 262-336 (367)
123 KOG1442 GDP-fucose transporter 50.2 28 0.00061 32.8 4.7 118 129-246 198-323 (347)
124 PF04342 DUF486: Protein of un 48.6 1.4E+02 0.003 23.9 10.2 52 197-248 53-106 (108)
125 PRK10666 ammonium transporter; 47.8 3.2E+02 0.0069 27.8 19.1 81 225-307 273-354 (428)
126 PF06946 Phage_holin_5: Phage 47.8 93 0.002 24.2 6.4 65 352-416 22-90 (93)
127 PF11044 TMEMspv1-c74-12: Plec 47.3 15 0.00032 24.1 1.7 8 399-406 21-28 (49)
128 COG3086 RseC Positive regulato 43.3 82 0.0018 26.6 5.9 26 356-381 70-95 (150)
129 PF08627 CRT-like: CRT-like; 42.1 58 0.0013 26.8 4.7 43 111-153 52-95 (130)
130 PF07444 Ycf66_N: Ycf66 protei 40.3 29 0.00062 26.5 2.6 29 385-413 4-32 (84)
131 PF04246 RseC_MucC: Positive r 38.7 66 0.0014 26.7 5.0 23 359-381 66-88 (135)
132 COG1742 Uncharacterized conser 38.5 70 0.0015 25.4 4.5 46 362-407 60-105 (109)
133 PRK10655 potE putrescine trans 38.3 4.3E+02 0.0092 26.5 14.8 23 389-411 409-431 (438)
134 KOG1443 Predicted integral mem 35.4 4.2E+02 0.0091 25.6 12.4 55 194-248 258-313 (349)
135 cd01324 cbb3_Oxidase_CcoQ Cyto 33.7 29 0.00064 23.4 1.6 23 393-415 18-40 (48)
136 PRK10712 PTS system fructose-s 33.0 6.1E+02 0.013 26.8 14.3 59 210-280 277-336 (563)
137 KOG4831 Unnamed protein [Funct 31.5 70 0.0015 25.5 3.5 39 365-403 84-122 (125)
138 PF07857 DUF1632: CEO family ( 31.2 4.4E+02 0.0096 24.6 11.9 69 181-249 57-133 (254)
139 COG3169 Uncharacterized protei 30.7 2.7E+02 0.0058 21.9 10.5 30 220-249 84-114 (116)
140 PRK10644 arginine:agmatin anti 29.1 6E+02 0.013 25.5 13.9 40 369-409 389-429 (445)
141 PRK09765 PTS system 2-O-a-mann 29.0 7.5E+02 0.016 26.5 13.1 17 212-228 344-361 (631)
142 KOG1583 UDP-N-acetylglucosamin 28.8 5.2E+02 0.011 24.7 9.9 40 210-249 273-313 (330)
143 COG1575 MenA 1,4-dihydroxy-2-n 27.5 5.6E+02 0.012 24.7 13.4 50 233-282 19-68 (303)
144 COG3104 PTR2 Dipeptide/tripept 27.4 7.2E+02 0.016 25.8 12.5 46 205-252 67-113 (498)
145 TIGR01167 LPXTG_anchor LPXTG-m 26.2 57 0.0012 19.7 1.9 14 387-400 11-24 (34)
146 PF15099 PIRT: Phosphoinositid 25.2 88 0.0019 25.7 3.2 19 383-401 74-92 (129)
147 PF09656 PGPGW: Putative trans 25.1 1.9E+02 0.0041 20.0 4.4 44 233-281 4-47 (53)
148 PF02355 SecD_SecF: Protein ex 25.0 4.8E+02 0.01 23.1 8.4 36 364-399 60-95 (189)
149 PRK12872 ubiA prenyltransferas 23.8 6E+02 0.013 23.7 14.3 15 375-389 148-162 (285)
150 PRK09776 putative diguanylate 23.8 1.1E+03 0.024 26.7 14.2 23 259-281 71-93 (1092)
151 PRK11357 frlA putative fructos 22.5 7.9E+02 0.017 24.6 14.2 22 392-413 419-440 (445)
152 PRK06638 NADH:ubiquinone oxido 22.3 5.6E+02 0.012 22.8 12.4 48 258-310 30-77 (198)
153 PF11139 DUF2910: Protein of u 22.3 5.7E+02 0.012 22.9 9.9 19 145-163 65-83 (214)
154 COG3086 RseC Positive regulato 22.3 1.1E+02 0.0025 25.8 3.5 37 207-243 76-112 (150)
155 PF05545 FixQ: Cbb3-type cytoc 22.2 70 0.0015 21.4 1.9 21 392-412 16-36 (49)
156 COG2211 MelB Na+/melibiose sym 21.5 9E+02 0.019 24.9 13.2 62 216-277 284-348 (467)
157 COG1971 Predicted membrane pro 21.5 2E+02 0.0042 25.7 4.9 44 360-403 40-84 (190)
158 COG3247 HdeD Uncharacterized c 21.0 5.9E+02 0.013 22.6 15.7 41 225-265 14-58 (185)
159 KOG3817 Uncharacterized conser 20.6 1.8E+02 0.0038 28.6 4.8 28 188-215 260-287 (452)
160 PF02439 Adeno_E3_CR2: Adenovi 20.5 1.3E+02 0.0029 19.2 2.6 22 391-412 13-34 (38)
161 PRK15462 dipeptide/tripeptide 20.4 9.6E+02 0.021 24.8 19.1 24 225-248 67-93 (493)
162 PF11346 DUF3149: Protein of u 20.1 1.1E+02 0.0024 20.0 2.3 29 382-410 7-36 (42)
163 PRK02935 hypothetical protein; 20.1 2.9E+02 0.0064 22.0 5.1 20 388-407 42-61 (110)
164 PF05977 MFS_3: Transmembrane 20.1 1E+03 0.022 24.9 15.8 24 358-381 344-367 (524)
No 1
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=8.3e-38 Score=306.42 Aligned_cols=295 Identities=39% Similarity=0.713 Sum_probs=253.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCC--HHHHHHHHHHHHHHH
Q 014782 113 KTLKLALVFGFWYFQNIVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKIS--KPFIIALLGPALFHT 190 (419)
Q Consensus 113 ~~l~~~~~~~~w~~~~~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~ 190 (419)
..++...+++.||+++...++.||++++.+|+|++++++|++++++++.+++..+.++.++.+ +++++.+++.|+++.
T Consensus 46 ~~~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~ 125 (350)
T PTZ00343 46 FKWKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHL 125 (350)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999998877766655544444442 457899999999998
Q ss_pred HHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecccccccHHhHHHHHHHHHH
Q 014782 191 IGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEVSFNFGGLWGAMISNIG 269 (419)
Q Consensus 191 ~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~l~ 269 (419)
..+...+.|+++++++.++++++++|++++++++ ++|||++++++++++++++|+.+++.+|.++++.|++++++|+++
T Consensus 126 ~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~ 205 (350)
T PTZ00343 126 FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLG 205 (350)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHH
Confidence 8888888999999999999999999999999999 999999999999999999999999988888889999999999999
Q ss_pred HHHHHHHHHhhcCCCC----CCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhh---hhhcCCchHHHHHHHHHHH
Q 014782 270 FVLRNIYSKKSLGDFK----EVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNA---IAAVGKPSTFYFWVLLSGI 342 (419)
Q Consensus 270 ~a~~~v~~k~~~~~~~----~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 342 (419)
+|+|+++.||.+++.+ ++++.++..++.+.+.++++|+....|+..+...+... ...+.... ++..++.+++
T Consensus 206 ~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~l~~i~~s~l 284 (350)
T PTZ00343 206 SSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGI-IIFKIFFSGV 284 (350)
T ss_pred HHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHH-HHHHHHHHHH
Confidence 9999999999876532 46777788888999999999998767754333222110 01111111 3456777888
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhh
Q 014782 343 FYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQAT 408 (419)
Q Consensus 343 ~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~ 408 (419)
.++++|.+.|.++++++|+++++.++++|++++++|++++||++++.+++|++++++|+++|++.|
T Consensus 285 ~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 285 WYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 888999999999999999999999999999999999999999999999999999999999998763
No 2
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=1.2e-37 Score=300.53 Aligned_cols=295 Identities=50% Similarity=0.847 Sum_probs=246.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 014782 116 KLALVFGFWYFQNIVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFHTIGHIS 195 (419)
Q Consensus 116 ~~~~~~~~w~~~~~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 195 (419)
+....+++||.++.+.+++||++++++++|+.++++|++++.+++.+.+..+.++.++.++++++.+++.|++++.+..+
T Consensus 2 ~~~~~~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 81 (302)
T TIGR00817 2 QTGLLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVT 81 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999887776654444445567788999999999999999999
Q ss_pred hhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecccccccHHhHHHHHHHHHHHHHHH
Q 014782 196 ACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEVSFNFGGLWGAMISNIGFVLRN 274 (419)
Q Consensus 196 ~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~l~~a~~~ 274 (419)
.++|++|+++++++++++++|++++++++ ++|||++++++++++++++|+++....+.+++..|++++++++++|++|.
T Consensus 82 ~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~ 161 (302)
T TIGR00817 82 SNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRN 161 (302)
T ss_pred HHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999998776667777889999999999999999
Q ss_pred HHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhh-hhhhhhhhcCCchHHHHHHHHHHH-HHHHHHHHHH
Q 014782 275 IYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQ-GYHNAIAAVGKPSTFYFWVLLSGI-FYHLYNQSSY 352 (419)
Q Consensus 275 v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 352 (419)
++.||..++ +++|+.++..|++..+.+++.|.....|+..... ++........... .+...+..+. +...++...+
T Consensus 162 v~~k~~~~~-~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 239 (302)
T TIGR00817 162 IFSKKAMTI-KSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTK-IYTVSLVAAMGFFHFYQQVAF 239 (302)
T ss_pred HHHHHhhcc-CCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999998652 3689999999999999999999977666543221 1111000011111 2332333333 4445667788
Q ss_pred HHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhcccc
Q 014782 353 QALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATAKKK 412 (419)
Q Consensus 353 ~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~~~~ 412 (419)
.++++++|.++++.++++|++++++|++++||+++..+++|+++++.|+++|++.|.+|+
T Consensus 240 ~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~ 299 (302)
T TIGR00817 240 MLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKP 299 (302)
T ss_pred HHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCc
Confidence 899999999999999999999999999999999999999999999999999998765443
No 3
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-36 Score=287.30 Aligned_cols=297 Identities=44% Similarity=0.655 Sum_probs=263.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCC-CHHHHHHHHHHHHH
Q 014782 112 NKTLKLALVFGFWYFQNIVFNIYNKKALN--VFPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKI-SKPFIIALLGPALF 188 (419)
Q Consensus 112 ~~~l~~~~~~~~w~~~~~~~~~~~K~~l~--~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ 188 (419)
++......++..|++++++.+++||++++ +|++|++++.++++.+.+.+.+.+..+..+.++. ++..++.++++|++
T Consensus 13 ~~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~ 92 (316)
T KOG1441|consen 13 KKILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLV 92 (316)
T ss_pred chhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHH
Confidence 36678888899999999999999999999 7999999999999999999988888877766655 44679999999999
Q ss_pred HHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecccccccHHhHHHHHHHH
Q 014782 189 HTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEVSFNFGGLWGAMISN 267 (419)
Q Consensus 189 ~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~ 267 (419)
++++..+.|.++.|++++++|++|+++|+++.++++ +.+|++++..+++++.++.||.+.+.+|.++|+.|.+.++++.
T Consensus 93 ~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~ 172 (316)
T KOG1441|consen 93 FCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISN 172 (316)
T ss_pred HHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC-CCCCCChhhHHHHHHHHHHHHHH-HHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHHHHHHH
Q 014782 268 IGFVLRNIYSKKSLG-DFKEVNGLNLYGWITIISLFYLF-PVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLSGIFYH 345 (419)
Q Consensus 268 l~~a~~~v~~k~~~~-~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (419)
+.++.++++.|++++ +++++|+.+++.|++..+.++++ |+....|+... ..+. .+.|... .+.+++.+ ++++
T Consensus 173 ~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~--~~~~~~~--~~~~~~~s-v~~f 246 (316)
T KOG1441|consen 173 LAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-VGFL--TAPWFVT--FLILLLNS-VLAF 246 (316)
T ss_pred HHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccce-eeee--ccccchh--hHHHHHHH-HHHH
Confidence 999999999999985 34689999999999999999999 88777676554 1111 0012222 24444444 9999
Q ss_pred HHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhcccccc
Q 014782 346 LYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATAKKKVE 414 (419)
Q Consensus 346 ~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~~~~~~ 414 (419)
++|+..|.++++++|+|+++.+.+|.++.++.|+++|++++++.+.+|+++.++|+++|++.|++++++
T Consensus 247 ~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 247 LLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred HHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999998876543
No 4
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.97 E-value=1.1e-28 Score=241.37 Aligned_cols=289 Identities=9% Similarity=0.076 Sum_probs=219.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhC-c-CCCCCCCHHHHHHHHHHHHHHHH
Q 014782 114 TLKLALVFGFWYFQNIVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLK-L-QPCPKISKPFIIALLGPALFHTI 191 (419)
Q Consensus 114 ~l~~~~~~~~w~~~~~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~ 191 (419)
.....+.+++-.....++.++.|..++..-.|..+.++|+.++++++.++...+ + ++.++.+++++..+...|++...
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~ 90 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSM 90 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHH
Confidence 344555566666777899999999998854488899999999998887654332 2 22344456777788888888766
Q ss_pred HHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-H------hCCccChhHHHHHHHHHhhhheeecc-cc----------
Q 014782 192 GHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-F------LGDIYPLKVWLSILPIVLGCSLAAVT-EV---------- 253 (419)
Q Consensus 192 ~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~------l~er~~~~~~~~v~l~~~Gv~l~~~~-~~---------- 253 (419)
.+.+.+.|++|++++.+.++.++.|++++++++ + +|||+++++++|++++++|+.++... +.
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~ 170 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY 170 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence 677899999999999999999999999999999 8 59999999999999999999976531 11
Q ss_pred -------------ccc-HHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCh-hhHHHHHHHHHHHHHHHHHHHhcChhhhh
Q 014782 254 -------------SFN-FGGLWGAMISNIGFVLRNIYSKKSLGDFKEVNG-LNLYGWITIISLFYLFPVAIFVEGSQWIQ 318 (419)
Q Consensus 254 -------------~~~-~~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~~~~~~ 318 (419)
..+ ..|++++++|+++||+|++++|+..++ +++ ....+++..++.+.+.+.....+......
T Consensus 171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~---~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~ 247 (358)
T PLN00411 171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSE---YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSV 247 (358)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCcHhHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 112 459999999999999999999998543 444 35566777666666655555555322111
Q ss_pred hhhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHH
Q 014782 319 GYHNAIAAVGKPSTFYFWVLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAI 398 (419)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil 398 (419)
+. ..++.. +..++..++...+...++++++++.+|.+++++.+++|++++++|++++||++++.+++|+++++
T Consensus 248 -~~---~~~~~~---~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl 320 (358)
T PLN00411 248 -WI---IHFDIT---LITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILIT 320 (358)
T ss_pred -ce---eccchH---HHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 10 001111 22233344444445567888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccc
Q 014782 399 FGTFLYSQATAKKK 412 (419)
Q Consensus 399 ~Gv~l~~~~~~~~~ 412 (419)
.|+++.++.++||.
T Consensus 321 ~Gv~l~~~~~~~~~ 334 (358)
T PLN00411 321 LGFYAVMWGKANEE 334 (358)
T ss_pred HHHHHHHhhhhhhh
Confidence 99999988776653
No 5
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.96 E-value=4.2e-27 Score=226.11 Aligned_cols=271 Identities=14% Similarity=0.102 Sum_probs=201.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHH
Q 014782 112 NKTLKLALVFGFWYFQNIVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFHTI 191 (419)
Q Consensus 112 ~~~l~~~~~~~~w~~~~~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 191 (419)
+..+.....+++| +++....|..+++++ |..+.++|+.++.+++.++. ++ ++.+++.++..+..++....
T Consensus 4 ~~~l~~l~a~~~W----g~~~~~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~--~~---~~~~~~~~~~~~~~~l~~~~ 73 (295)
T PRK11689 4 KATLIGLIAILLW----STMVGLIRGVSESLG-PVGGAAMIYSVSGLLLLLTV--GF---PRLRQFPKRYLLAGGLLFVS 73 (295)
T ss_pred chhHHHHHHHHHH----HHHHHHHHHHHccCC-hHHHHHHHHHHHHHHHHHHc--cc---cccccccHHHHHHHhHHHHH
Confidence 3455677777888 777889999999998 99999999999988876543 11 11222233444554555566
Q ss_pred HHHHhhhHhc----ccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeeccccc-----------c
Q 014782 192 GHISACVSFS----KVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEVS-----------F 255 (419)
Q Consensus 192 ~~~~~~~al~----~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~~-----------~ 255 (419)
...+.+.+++ ++++..+.++.++.|+++.++++ ++|||+++++++|++++++|++++..++.+ .
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~ 153 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIAS 153 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhcccc
Confidence 6777777775 46778889999999999999999 999999999999999999999988754321 2
Q ss_pred cHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHH
Q 014782 256 NFGGLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYF 335 (419)
Q Consensus 256 ~~~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (419)
+..|+++++++++|||+|.++.||..+ +.++..... ..+.+.+.+.....+.+... ++.. .+.
T Consensus 154 ~~~G~~~~l~aa~~~A~~~v~~k~~~~---~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~---------~~~~--~~~ 216 (295)
T PRK11689 154 NPLSYGLAFIGAFIWAAYCNVTRKYAR---GKNGITLFF---ILTALALWIKYFLSPQPAMV---------FSLP--AII 216 (295)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhccC---CCCchhHHH---HHHHHHHHHHHHHhcCcccc---------CCHH--HHH
Confidence 346999999999999999999999843 356655422 22233333332322211111 1111 244
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhc
Q 014782 336 WVLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATA 409 (419)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~ 409 (419)
.++..++.....+.++++++++.++..++++.+++|++++++|++++||+++..+++|+++++.|+++....++
T Consensus 217 ~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 217 KLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 44455555556677888999999999999999999999999999999999999999999999999987765443
No 6
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.96 E-value=1.7e-26 Score=222.61 Aligned_cols=281 Identities=20% Similarity=0.332 Sum_probs=229.4
Q ss_pred HHHHHHHHHHHHHHHHhc-CC--ChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhHh
Q 014782 124 WYFQNIVFNIYNKKALNV-FP--FPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFHTIGHISACVSF 200 (419)
Q Consensus 124 w~~~~~~~~~~~K~~l~~-~~--~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al 200 (419)
.++....+.++++.+.+. .. +|+++++.|+++..+...+.....+ .++.++..++.++..++++.++..+.+.|+
T Consensus 8 i~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 85 (303)
T PF08449_consen 8 IFGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK--FPKSRKIPLKKYAILSFLFFLASVLSNAAL 85 (303)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc--ccCCCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566777777765 32 6999999999999887776554333 223344557888899999999999999999
Q ss_pred cccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeeccccc----c------cHHhHHHHHHHHHH
Q 014782 201 SKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEVS----F------NFGGLWGAMISNIG 269 (419)
Q Consensus 201 ~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~~----~------~~~G~~~~l~s~l~ 269 (419)
+|++.+..+++|++.|++++++++ ++|||+++++++++++.++|+++....|.+ . ...|+++.+++.++
T Consensus 86 ~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~ 165 (303)
T PF08449_consen 86 KYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLL 165 (303)
T ss_pred HhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHH
Confidence 999999999999999999999999 999999999999999999999998765421 1 12399999999999
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHH
Q 014782 270 FVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLSGIFYHLYNQ 349 (419)
Q Consensus 270 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (419)
.|.+.+++||.+++ .+.++.++++|.+.++.++.++.....+..+..+...... ..+. .+..++..+++++..+.
T Consensus 166 ~a~~~~~qe~~~~~-~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~---~~p~-~~~~l~~~s~~~~~g~~ 240 (303)
T PF08449_consen 166 DAFTGVYQEKLFKK-YGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFIS---AHPS-VLLYLLLFSLTGALGQF 240 (303)
T ss_pred HHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH---HhHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999874 5778899999999999998888766632112222111111 1111 47778888888888888
Q ss_pred HHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhccc
Q 014782 350 SSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATAKK 411 (419)
Q Consensus 350 ~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~~~ 411 (419)
..+.++++.+|++.++.+.+++++++++++++||+++++.+|+|+++++.|..+|++.|+|+
T Consensus 241 ~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 241 FIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 88889999999999999999999999999999999999999999999999999999988765
No 7
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.96 E-value=5.4e-26 Score=218.13 Aligned_cols=273 Identities=14% Similarity=0.165 Sum_probs=211.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHH-HHHHH
Q 014782 116 KLALVFGFWYFQNIVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFH-TIGHI 194 (419)
Q Consensus 116 ~~~~~~~~w~~~~~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~ 194 (419)
.++...++| ++..+..|...++.+ |..++++|++++.++++++...++++ ..++++++.....|.+. .....
T Consensus 12 ~~~~~~~iW----g~~~~~~K~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~ 84 (292)
T PRK11272 12 ALFALYIIW----GSTYLVIRIGVESWP-PLMMAGVRFLIAGILLLAFLLLRGHP--LPTLRQWLNAALIGLLLLAVGNG 84 (292)
T ss_pred HHHHHHHHH----hhHHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 345555556 788889999998887 99999999999988877665443322 23466777777777664 45677
Q ss_pred HhhhHh-cccchhHHHHHHHhHHHHHHHHHHHhCCccChhHHHHHHHHHhhhheeecc-cccccHHhHHHHHHHHHHHHH
Q 014782 195 SACVSF-SKVAVSFTHVIKSAEPVFAVVFSSFLGDIYPLKVWLSILPIVLGCSLAAVT-EVSFNFGGLWGAMISNIGFVL 272 (419)
Q Consensus 195 ~~~~al-~~~~~~~~~li~~~~Pi~~~lls~~l~er~~~~~~~~v~l~~~Gv~l~~~~-~~~~~~~G~~~~l~s~l~~a~ 272 (419)
+.+++. ++++++.+.++.++.|+++++++.++|||+++++++|++++++|+.++..+ +.+.+..|++++++++++||.
T Consensus 85 ~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~ 164 (292)
T PRK11272 85 MVTVAEHQNVPSGIAAVVVATVPLFTLCFSRLFGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAF 164 (292)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHH
Confidence 888898 999999999999999999999999559999999999999999999987643 334556899999999999999
Q ss_pred HHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHHHHH-HHHHHHHH
Q 014782 273 RNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLSGIF-YHLYNQSS 351 (419)
Q Consensus 273 ~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 351 (419)
+.+..||..+ .++.....++...+.+.+.+.....+.+.... .+.. .+..++..++. .......+
T Consensus 165 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--~~~~i~~l~i~~s~~~~~l~ 230 (292)
T PRK11272 165 GSVWSSRLPL----PVGMMAGAAEMLAAGVVLLIASLLSGERLTAL--------PTLS--GFLALGYLAVFGSIIAISAY 230 (292)
T ss_pred HHHHHHhcCC----CcchHHHHHHHHHHHHHHHHHHHHcCCccccc--------CCHH--HHHHHHHHHHHHHHHHHHHH
Confidence 9999999732 13455667777778777777655433221110 0111 24444444444 33445677
Q ss_pred HHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhc
Q 014782 352 YQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATA 409 (419)
Q Consensus 352 ~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~ 409 (419)
+.++++.++.+++++.+++|++++++|++++||++++.+++|+++++.|+++.+..++
T Consensus 231 ~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 231 MYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999999999999999999999999877554
No 8
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.3e-26 Score=212.88 Aligned_cols=294 Identities=22% Similarity=0.272 Sum_probs=254.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH--HHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 014782 117 LALVFGFWYFQNIVFNIYNKKALNVFPFPWLLAS--FQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFHTIGHI 194 (419)
Q Consensus 117 ~~~~~~~w~~~~~~~~~~~K~~l~~~~~P~~l~~--~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 194 (419)
.....+.+..++..+.+.||++++.+++|..+.. .|.+++.+.+..+.+.|..+.++++++..|.+++..+++.+..+
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~ 92 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLF 92 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHH
Confidence 3455666667789999999999999999976666 99999999998888888888889999999999999999999999
Q ss_pred HhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecccccccHHhHHHHHHHHHHHHHH
Q 014782 195 SACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEVSFNFGGLWGAMISNIGFVLR 273 (419)
Q Consensus 195 ~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~l~~a~~ 273 (419)
....+++|++++.++++|..+|+++++.+. ++|.|+++..|.++..+.+|.......|.+++..|+.|++...++.+.+
T Consensus 93 t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~ 172 (314)
T KOG1444|consen 93 TGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAF 172 (314)
T ss_pred HccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHH
Q 014782 274 NIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLSGIFYHLYNQSSYQ 353 (419)
Q Consensus 274 ~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (419)
.++.|+..+ ..+.+...+++|.++.+.+.+....++++..+ ......+.+.... ++..+.++|+++++.+++.++
T Consensus 173 ~v~~kk~vd-~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~---~l~~~~~~~~~~~-~~~~~~lScv~gf~isy~s~~ 247 (314)
T KOG1444|consen 173 VVYVKKSVD-SANLNKFGLVFYNNLLSLPPLLILSFITGELD---ALSLNFDNWSDSS-VLVVMLLSCVMGFGISYTSFL 247 (314)
T ss_pred HHHHHHhhc-cccccceeEEeehhHHHHHHHHHHHHHhcchH---HHHhhcccccchh-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999865 45678889999999999988888876665433 1111111122222 688899999999999999999
Q ss_pred HhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhccccccc
Q 014782 354 ALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATAKKKVEG 415 (419)
Q Consensus 354 ~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~~~~~~~ 415 (419)
+.+..|+.+.++++......+.+.+.+++|++.++..++|..+-++|..+|++.+.++|+.+
T Consensus 248 ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~ 309 (314)
T KOG1444|consen 248 CTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP 309 (314)
T ss_pred HHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence 99999999999999666666677777777889999999999999999999999886655443
No 9
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.95 E-value=3.7e-25 Score=213.05 Aligned_cols=276 Identities=14% Similarity=0.209 Sum_probs=200.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHH-HHH
Q 014782 115 LKLALVFGFWYFQNIVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFHT-IGH 193 (419)
Q Consensus 115 l~~~~~~~~w~~~~~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 193 (419)
+..++..++| +......|..+++++ |..+.++|+.++++.+.++.. ++ +.+ ++..+..+++.. ...
T Consensus 7 l~~l~~~~~W----g~~~~~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~~--~~---~~~---~~~~~~~g~~~~~~~~ 73 (299)
T PRK11453 7 VLALLVVVVW----GLNFVVIKVGLHNMP-PLMLAGLRFMLVAFPAIFFVA--RP---KVP---LNLLLGYGLTISFGQF 73 (299)
T ss_pred HHHHHHHHHH----hhhHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhc--CC---CCc---hHHHHHHHHHHHHHHH
Confidence 4566667777 777888999998888 999999999997766554431 11 112 233344455433 344
Q ss_pred HHhhhHhcc-cchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeeccc---ccccHHhHHHHHHHHH
Q 014782 194 ISACVSFSK-VAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTE---VSFNFGGLWGAMISNI 268 (419)
Q Consensus 194 ~~~~~al~~-~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~---~~~~~~G~~~~l~s~l 268 (419)
.+.+.+++| .+++.+.++.++.|+++.++++ ++|||++++++++++++++|+.++..++ .+.+..|+++++++++
T Consensus 74 ~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal 153 (299)
T PRK11453 74 AFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAF 153 (299)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHH
Confidence 566788887 6899999999999999999999 9999999999999999999999876542 2234579999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhh-hhhhhhhhhcCCchHHHHHHHHHHHHHHH-
Q 014782 269 GFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWI-QGYHNAIAAVGKPSTFYFWVLLSGIFYHL- 346 (419)
Q Consensus 269 ~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 346 (419)
+|++|.++.||..++...........+++..+.+.........|++... ..+. .++.. .+..++..+++...
T Consensus 154 ~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~l~~l~i~~t~~ 227 (299)
T PRK11453 154 SWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLV----TIDMT--TILSLMYLAFVATIV 227 (299)
T ss_pred HHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhc----cCCHH--HHHHHHHHHHHHHHH
Confidence 9999999999975432223334445555555554444443334432211 1000 01112 25555555554443
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhc
Q 014782 347 YNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATA 409 (419)
Q Consensus 347 ~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~ 409 (419)
....++..+++.++.+.+++.+++|++++++|++++||+++..+++|++++++|+++..+.++
T Consensus 228 ~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 228 GYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 345677889999999999999999999999999999999999999999999999998776554
No 10
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.95 E-value=4e-25 Score=212.45 Aligned_cols=276 Identities=14% Similarity=0.133 Sum_probs=194.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCcC-CC-C--CCCHHHHHHHHHHHH
Q 014782 112 NKTLKLALVFGFWYFQNIVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKLQ-PC-P--KISKPFIIALLGPAL 187 (419)
Q Consensus 112 ~~~l~~~~~~~~w~~~~~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~-~~-~--~~~~~~~~~~~~~~l 187 (419)
++....++..++| +...+..|.. .+.+ |..+.++|++++.+++.+....+++ +. + ..+++++...+..++
T Consensus 8 ~g~~~~l~a~~~w----g~~~~~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (296)
T PRK15430 8 QGVLLALAAYFIW----GIAPAYFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV 81 (296)
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence 3445555566666 6667777875 5677 9999999999998766554332211 10 0 012333333444456
Q ss_pred HHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecccccccHHhHHHHHHH
Q 014782 188 FHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEVSFNFGGLWGAMIS 266 (419)
Q Consensus 188 ~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~~~l~s 266 (419)
....++.++++|+++++++.+.++.++.|++++++++ ++|||+++++|+|++++++|+.++...+.+. .++++++
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----~~~~l~a 157 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----PIIALGL 157 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----cHHHHHH
Confidence 6777899999999999999999999999999999999 9999999999999999999999876433222 2568889
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHHHHHHHH
Q 014782 267 NIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLSGIFYHL 346 (419)
Q Consensus 267 ~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (419)
+++||.|.++.||...+ ...+......|+..++.+...+. .+.. ... +. ..... .+..++..++.+..
T Consensus 158 a~~~a~~~i~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~-~~-----~~~~~-~~~~~~~~g~~t~i 225 (296)
T PRK15430 158 AFSFAFYGLVRKKIAVE-AQTGMLIETMWLLPVAAIYLFAI---ADSS-TSH-MG-----QNPMS-LNLLLIAAGIVTTV 225 (296)
T ss_pred HHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHHHHHHHHHH---ccCC-ccc-cc-----CCcHH-HHHHHHHHHHHHHH
Confidence 99999999999987321 11222333344444444332221 1111 100 00 01111 23344444545556
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhc
Q 014782 347 YNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATA 409 (419)
Q Consensus 347 ~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~ 409 (419)
.+.+++.++++.+|.+.+++.+++|++++++|++++||++++.+++|+++++.|+.+......
T Consensus 226 ~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~~ 288 (296)
T PRK15430 226 PLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDAI 288 (296)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888999999999999999999999999999999999999999999999888877765443
No 11
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.95 E-value=3.4e-26 Score=208.55 Aligned_cols=298 Identities=20% Similarity=0.250 Sum_probs=249.5
Q ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCc-CCC---CCCCH-HHHHHH
Q 014782 108 VSKPNKTLKLALVFGFWYFQNIVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKL-QPC---PKISK-PFIIAL 182 (419)
Q Consensus 108 ~~~~~~~l~~~~~~~~w~~~~~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~-~~~---~~~~~-~~~~~~ 182 (419)
.+.+......+.++++||+++++..+++|+.-.+|++|.+++..|+++-.++.....+... ... ...+| ..+++.
T Consensus 8 ~~~~~~rV~~L~lVl~yY~~Si~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~ 87 (349)
T KOG1443|consen 8 NQFLMNRVLTLALVLLYYFLSIGLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRL 87 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHh
Confidence 3344455666777799999999999999999888999999999999987776554433221 111 23444 457788
Q ss_pred HHHHHHHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecccccccHHhHH
Q 014782 183 LGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEVSFNFGGLW 261 (419)
Q Consensus 183 ~~~~l~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~ 261 (419)
.+.++..+++..++|++++|++++.+++.|+++++|+.+++. +.=||+++.-.+-++++.+|+++.+..+.+++..|..
T Consensus 88 aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~ 167 (349)
T KOG1443|consen 88 APTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFF 167 (349)
T ss_pred hhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHH
Confidence 899999999999999999999999999999999999999999 6669999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC--CCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCC--chHHHHHH
Q 014782 262 GAMISNIGFVLRNIYSKKSLGDFK--EVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGK--PSTFYFWV 337 (419)
Q Consensus 262 ~~l~s~l~~a~~~v~~k~~~~~~~--~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 337 (419)
++++|+++.++++.+.+.++++.+ +-+|....++......+.++|..+.+|++.... +...+...+. .......+
T Consensus 168 lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~-~s~~f~~~d~~~~~rv~g~i 246 (349)
T KOG1443|consen 168 LVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLIT-SSSIFRFQDTGLILRVIGLI 246 (349)
T ss_pred HHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccch-hhhHHHhcCccHHHHHHHHH
Confidence 999999999999999999988644 457888999999999999999999999876432 1111111222 11135566
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHh
Q 014782 338 LLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQ 406 (419)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~ 406 (419)
.+.|..+++...+-+..+.+++.++.++.+..+.+.+.+++..+.+|+++..+|.|..+++.|+..|..
T Consensus 247 ~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 247 SLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 777788888888899999999999999999999999999999999999999999999999999999944
No 12
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.95 E-value=1.5e-24 Score=208.30 Aligned_cols=272 Identities=12% Similarity=0.089 Sum_probs=203.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHH
Q 014782 113 KTLKLALVFGFWYFQNIVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFHTIG 192 (419)
Q Consensus 113 ~~l~~~~~~~~w~~~~~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 192 (419)
......+.+++| ...+...|+++++++ |..+.++|++++.+++.++...++ .+.++++++..+..|++....
T Consensus 13 ~~~~~~la~~~~----~~~~~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~ 84 (293)
T PRK10532 13 PILLLLIAMASI----QSGASLAKSLFPLVG-APGVTALRLALGTLILIAIFKPWR---LRFAKEQRLPLLFYGVSLGGM 84 (293)
T ss_pred HHHHHHHHHHHH----HhhHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHHh---ccCCHHHHHHHHHHHHHHHHH
Confidence 344455555555 667778999999988 999999999999988776543222 134567777777888888888
Q ss_pred HHHhhhHhcccchhHHHHHHHhHHHHHHHHHHHhCCccChhHHHHHHHHHhhhheeeccc---ccccHHhHHHHHHHHHH
Q 014782 193 HISACVSFSKVAVSFTHVIKSAEPVFAVVFSSFLGDIYPLKVWLSILPIVLGCSLAAVTE---VSFNFGGLWGAMISNIG 269 (419)
Q Consensus 193 ~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~~l~er~~~~~~~~v~l~~~Gv~l~~~~~---~~~~~~G~~~~l~s~l~ 269 (419)
+.+.+++++|++++.+.++..+.|+++++++ +||+. ++.++.++++|+.++...+ .+.+..|++++++++++
T Consensus 85 ~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~---~~~~~--~~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~ 159 (293)
T PRK10532 85 NYLFYLSIQTVPLGIAVALEFTGPLAVALFS---SRRPV--DFVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGAC 159 (293)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHHh---cCChH--HHHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHH
Confidence 8899999999999999999999999998877 35554 4456677899998765322 23356799999999999
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHHHHHHH-HHH
Q 014782 270 FVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLSGIFYH-LYN 348 (419)
Q Consensus 270 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 348 (419)
||+|.++.||..+ +.++... .++..++.+++.+.....+. .... +.. .+..++..+++.. +.+
T Consensus 160 ~a~~~v~~r~~~~---~~~~~~~-~~~~~~~~~~l~~~~~~~~~-~~~~---------~~~--~~~~~l~lgv~~t~~~~ 223 (293)
T PRK10532 160 WAIYILSGQRAGA---EHGPATV-AIGSLIAALIFVPIGALQAG-EALW---------HWS--ILPLGLAVAILSTALPY 223 (293)
T ss_pred HHHHHHHHHHHhc---cCCchHH-HHHHHHHHHHHHHHHHHccC-cccC---------CHH--HHHHHHHHHHHHHHHHH
Confidence 9999999999843 3566555 45666777777776554332 1110 111 1323334444433 344
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhccccc
Q 014782 349 QSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATAKKKV 413 (419)
Q Consensus 349 ~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~~~~~ 413 (419)
.+++.++++.++.+++++.+++|++++++|++++||+++..+++|++++++|+..+.+..+++.+
T Consensus 224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~~ 288 (293)
T PRK10532 224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREPK 288 (293)
T ss_pred HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 56678999999999999999999999999999999999999999999999999999877655433
No 13
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.94 E-value=1.1e-24 Score=205.56 Aligned_cols=254 Identities=16% Similarity=0.155 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHH-HHHHHHHHhhhHhcccchhH
Q 014782 129 IVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPAL-FHTIGHISACVSFSKVAVSF 207 (419)
Q Consensus 129 ~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~al~~~~~~~ 207 (419)
+.+.+..|+.+++...+..+.+.|++++.+++.+....+ .++++++..+..+. ...++..+.+.|++|++++.
T Consensus 2 g~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~ 75 (260)
T TIGR00950 2 GTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGE 75 (260)
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 456678899998755588999999998888776654332 23444444555554 46788899999999999999
Q ss_pred HHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeeccc-ccccHHhHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 014782 208 THVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTE-VSFNFGGLWGAMISNIGFVLRNIYSKKSLGDFK 285 (419)
Q Consensus 208 ~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~-~~~~~~G~~~~l~s~l~~a~~~v~~k~~~~~~~ 285 (419)
+.++.++.|+++++++. ++|||+++++++|++++++|+.++...+ .+.+..|++++++++++|+.+.++.|+..++ .
T Consensus 76 ~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~-~ 154 (260)
T TIGR00950 76 AALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKK-E 154 (260)
T ss_pred hHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhc-C
Confidence 99999999999999999 9999999999999999999999875443 3456789999999999999999999998543 2
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHHHHH-HHHHHHHHHHHhhccChhHHH
Q 014782 286 EVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLSGIF-YHLYNQSSYQALDDISPLTFS 364 (419)
Q Consensus 286 ~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~sa~~~s 364 (419)
+.++.....+....+.+++.+.....+..... +.. .+..++..+++ .......+++++++.++.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s 222 (260)
T TIGR00950 155 GPELLQFTGWVLLLGALLLLPFAWFLGPNPQA----------LSL--QWGALLYLGLIGTALAYFLWNKGLTLVDPSAAS 222 (260)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----------chH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 22244555567778888887775543322111 111 24344444444 344556778899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHH
Q 014782 365 VGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGT 401 (419)
Q Consensus 365 v~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv 401 (419)
++.+++|+++++++++++||+++..+++|+++++.|+
T Consensus 223 ~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 223 ILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999986
No 14
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.94 E-value=1.1e-24 Score=208.83 Aligned_cols=270 Identities=16% Similarity=0.150 Sum_probs=213.2
Q ss_pred HHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhCc--CCCCCCCHHHHHHHHHHHHHHHHHHHHhhhHhcccchh
Q 014782 130 VFNIYNKKALNV-FPFPWLLASFQLFAGSVWMLVLWSLKL--QPCPKISKPFIIALLGPALFHTIGHISACVSFSKVAVS 206 (419)
Q Consensus 130 ~~~~~~K~~l~~-~~~P~~l~~~r~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~ 206 (419)
+....+..+-+. +..|.+.+++.++...++.......++ ++..+..+++|++++..+++...++++.+.|++|++++
T Consensus 27 ~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvt 106 (334)
T PF06027_consen 27 GTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVT 106 (334)
T ss_pred hHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHh
Confidence 344455555444 677988888888766554433322222 22222334567777778999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecccc---------cccHHhHHHHHHHHHHHHHHHHH
Q 014782 207 FTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEV---------SFNFGGLWGAMISNIGFVLRNIY 276 (419)
Q Consensus 207 ~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~---------~~~~~G~~~~l~s~l~~a~~~v~ 276 (419)
.++++.+++.+|++++++ ++|+|+++.+++|++++++|+.++...|. +....|++++++|+++||+++++
T Consensus 107 S~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~ 186 (334)
T PF06027_consen 107 SVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVL 186 (334)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999999999998766542 22478999999999999999999
Q ss_pred HHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014782 277 SKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLSGIFYHLYNQSSYQALD 356 (419)
Q Consensus 277 ~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 356 (419)
.|+..++ .+..+.+++.++++.++..+....+|...+.. .. |+.. .+...+..+++.+..+...-..++
T Consensus 187 ~E~~v~~---~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~-~~-----w~~~--~~~~~v~~~~~lf~~y~l~p~~l~ 255 (334)
T PF06027_consen 187 EEKLVKK---APRVEFLGMLGLFGFIISGIQLAILERSGIES-IH-----WTSQ--VIGLLVGYALCLFLFYSLVPIVLR 255 (334)
T ss_pred HHHhccc---CCHHHHHHHHHHHHHHHHHHHHHheehhhhhc-cC-----CChh--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999664 57888999999999999988877777655443 21 3333 344555555555555545556789
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhcc
Q 014782 357 DISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATAK 410 (419)
Q Consensus 357 ~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~~ 410 (419)
..+|...++...+..++++++++++||+++++..++|.++|+.|+++|+..+++
T Consensus 256 ~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~ 309 (334)
T PF06027_consen 256 MSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESP 309 (334)
T ss_pred hCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCc
Confidence 999999999888999999999999999999999999999999999999876543
No 15
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.90 E-value=1.4e-21 Score=186.55 Aligned_cols=261 Identities=15% Similarity=0.222 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhC--cCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhHhccc
Q 014782 126 FQNIVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLK--LQPCPKISKPFIIALLGPALFHTIGHISACVSFSKV 203 (419)
Q Consensus 126 ~~~~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~ 203 (419)
++....+...|...++-+ +. .+.++....+++.++...+ ..+.+..+++.+...+..++....+..+.+.++++.
T Consensus 11 ~~~a~~~~~~k~~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (281)
T TIGR03340 11 LMHAGWNLMAKSHADKEP-DF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYHHA 87 (281)
T ss_pred HHHHHHHHHHhhcCCchh-HH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334777888997766522 32 3555555555555544332 222333344555556666666788889999999999
Q ss_pred chhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecccc-cccHHhHHHHHHHHHHHHHHHHHHHhhc
Q 014782 204 AVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEV-SFNFGGLWGAMISNIGFVLRNIYSKKSL 281 (419)
Q Consensus 204 ~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~-~~~~~G~~~~l~s~l~~a~~~v~~k~~~ 281 (419)
+++.+..+.++.|++++++++ ++|||+++++|+|++++++|+.++..++. +.+..|+.++++++++|++|.++.|+..
T Consensus 88 ~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~i~~k~~~ 167 (281)
T TIGR03340 88 DVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYSLSDKAAA 167 (281)
T ss_pred ChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhhhccccc
Confidence 999999999999999999999 99999999999999999999997764432 3456788899999999999999988763
Q ss_pred CCCCCCChhh-HHHHHHHHHHHHH-HHHHHH---hcChhhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014782 282 GDFKEVNGLN-LYGWITIISLFYL-FPVAIF---VEGSQWIQGYHNAIAAVGKPSTFYFWVLLSGIFYHLYNQSSYQALD 356 (419)
Q Consensus 282 ~~~~~~~~~~-~~~~~~~~~~i~l-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 356 (419)
++ .++.. ...+.. .+.++. .|.... .+...... .... .+..+...++.....+.+++.+++
T Consensus 168 ~~---~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--~~~~~~~~~~~s~l~~~l~~~al~ 233 (281)
T TIGR03340 168 LG---VPAFYSALGYLG-IGFLAMGWPFLLLYLKRHGRSMFP--------YARQ--ILPSATLGGLMIGGAYALVLWAMT 233 (281)
T ss_pred cc---hhcccccHHHHH-HHHHHHHHHHHHHHHHHhccchhh--------hHHH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 23221 111111 122111 222221 11111100 0011 244455555555566677888999
Q ss_pred ccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHH
Q 014782 357 DISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFL 403 (419)
Q Consensus 357 ~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l 403 (419)
+.++...+.+.+++|++++++|++++||+++..+++|+++++.|+++
T Consensus 234 ~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 234 RLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred hCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 99999999999999999999999999999999999999999999875
No 16
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.89 E-value=6.4e-21 Score=174.44 Aligned_cols=294 Identities=16% Similarity=0.123 Sum_probs=239.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHH
Q 014782 111 PNKTLKLALVFGFWYFQNIVFNIYNKKALNV--------FPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIAL 182 (419)
Q Consensus 111 ~~~~l~~~~~~~~w~~~~~~~~~~~K~~l~~--------~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 182 (419)
.++.+++..++...+.......++++.+.+. |.+|.++.+.|-+++.++-..+...+..+ ...++.|+.+
T Consensus 9 ~~~~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~--~~~~apl~~y 86 (327)
T KOG1581|consen 9 ANKIILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKE--LSGVAPLYKY 86 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhccccc--CCCCCchhHH
Confidence 3445566666666667777778888877663 67899999999999988875554322222 3334567788
Q ss_pred HHHHHHHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecccc--------
Q 014782 183 LGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEV-------- 253 (419)
Q Consensus 183 ~~~~l~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~-------- 253 (419)
...++...++..+.+.||+|++.++..+.|++..+.+++++. +.|+|++..+++...++.+||.+....+.
T Consensus 87 ~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g 166 (327)
T KOG1581|consen 87 SLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSG 166 (327)
T ss_pred hHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccC
Confidence 888999999999999999999999999999999999999999 99999999999999999999998764321
Q ss_pred -cccHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchH
Q 014782 254 -SFNFGGLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPST 332 (419)
Q Consensus 254 -~~~~~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (419)
...+.|+.+...+.+..++-+..++++++ ..++++++++++.++++++..... ++ +...+.+..+. ...++.
T Consensus 167 ~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~-~~k~s~~~mM~~vNLf~~i~~~~~-li-~qg~~~~av~F--~~~hp~-- 239 (327)
T KOG1581|consen 167 RENSPIGILLLFGYLLFDGFTNATQDSLFK-KYKVSSLHMMFGVNLFSAILNGTY-LI-LQGHLLPAVSF--IKEHPD-- 239 (327)
T ss_pred CCCchHhHHHHHHHHHHHhhHHhHHHHHhc-cCCccHhHHHHHHHHHHHHHHHHh-hh-cCCCCchHHHH--HHcChh--
Confidence 24579999999999999999999999987 578999999999999999887666 32 22222221111 111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhcccc
Q 014782 333 FYFWVLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATAKKK 412 (419)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~~~~ 412 (419)
++..+++.+.++...+.+.|..+++.++++.+..+..|.++++.++.+.||++++..|++|..+++.|+.+-...+++++
T Consensus 240 ~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~~~ 319 (327)
T KOG1581|consen 240 VAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKKKN 319 (327)
T ss_pred HHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHhcc
Confidence 68889999999999999999999999999999999999999999999999999999999999999999998887766643
Q ss_pred c
Q 014782 413 V 413 (419)
Q Consensus 413 ~ 413 (419)
.
T Consensus 320 ~ 320 (327)
T KOG1581|consen 320 Q 320 (327)
T ss_pred C
Confidence 3
No 17
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.7e-23 Score=186.59 Aligned_cols=293 Identities=19% Similarity=0.254 Sum_probs=241.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHHHHHhC-----cCCCC--CCCHHHHHHHH
Q 014782 115 LKLALVFGFWYFQNIVFNIYNKKALNV----FPFPWLLASFQLFAGSVWMLVLWSLK-----LQPCP--KISKPFIIALL 183 (419)
Q Consensus 115 l~~~~~~~~w~~~~~~~~~~~K~~l~~----~~~P~~l~~~r~~~~~~~l~~~~~~~-----~~~~~--~~~~~~~~~~~ 183 (419)
.+....+..+..+++++.+.||++++. .+.|.++++.|.++...++..+.... ....+ +++.+..+..+
T Consensus 27 ~~v~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vl 106 (347)
T KOG1442|consen 27 KQVDSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVL 106 (347)
T ss_pred hchhhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhc
Confidence 344444555557788889999999986 67899999999999888777653321 11122 24556778899
Q ss_pred HHHHHHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeeccc---ccccHHh
Q 014782 184 GPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTE---VSFNFGG 259 (419)
Q Consensus 184 ~~~l~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~---~~~~~~G 259 (419)
++++.+.++..+.|.+++|++++.+.+-+++.-+|+.++++ ++|+|-+..-..+++++++|-.+-...| ...++.|
T Consensus 107 plsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~G 186 (347)
T KOG1442|consen 107 PLSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIG 186 (347)
T ss_pred chhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhh
Confidence 99999999999999999999999999999999999999999 9999999999999999999998877666 3457899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHH
Q 014782 260 LWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLL 339 (419)
Q Consensus 260 ~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (419)
.++++.|.++-|+..++.||.+.. ....-+.+.+|+++.+.++.+|..++....+-..+++ .-...++|..+.+
T Consensus 187 vifGVlaSl~vAlnaiytkk~l~~-v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~-----~l~a~~Fw~~mtL 260 (347)
T KOG1442|consen 187 VIFGVLASLAVALNAIYTKKVLPP-VGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFP-----HLPAIKFWILMTL 260 (347)
T ss_pred hHHHHHHHHHHHHHHHhhheeccc-ccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcc-----cchHHHHHHHHHH
Confidence 999999999999999999988542 2334568899999999999999866543322221222 1112237999999
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhccccc
Q 014782 340 SGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATAKKKV 413 (419)
Q Consensus 340 ~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~~~~~ 413 (419)
+|++++..++...+-++-+||+|+.+-+..|.....++++.+++|..+..-|-|-.+++.|...|++.|+.+.+
T Consensus 261 sglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~ 334 (347)
T KOG1442|consen 261 SGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMR 334 (347)
T ss_pred HHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHH
Confidence 99999999998888999999999999999999999999999999999999999999999999999998876644
No 18
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.87 E-value=4.8e-19 Score=169.04 Aligned_cols=264 Identities=18% Similarity=0.207 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhHhcccchh
Q 014782 127 QNIVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFHTIGHISACVSFSKVAVS 206 (419)
Q Consensus 127 ~~~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~ 206 (419)
.+.......|...+....+....+.|+..+..........+.....+..++.++..+..++.......+.+.++++++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (292)
T COG0697 18 LWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYTSAS 97 (292)
T ss_pred HHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 33666667777776533255566669888887744333222111111122233445555566778889999999999999
Q ss_pred HHHHHHHhHHHHHHHHHH--HhCCccChhHHHHHHHHHhhhheeeccccccc---HHhHHHHHHHHHHHHHHHHHHHhhc
Q 014782 207 FTHVIKSAEPVFAVVFSS--FLGDIYPLKVWLSILPIVLGCSLAAVTEVSFN---FGGLWGAMISNIGFVLRNIYSKKSL 281 (419)
Q Consensus 207 ~~~li~~~~Pi~~~lls~--~l~er~~~~~~~~v~l~~~Gv~l~~~~~~~~~---~~G~~~~l~s~l~~a~~~v~~k~~~ 281 (419)
.++++.++.|+++.++++ ++|||+++++|.++++++.|+.++..++...+ ..|+++++.+++++|++.++.|+..
T Consensus 98 ~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~~~~ 177 (292)
T COG0697 98 VASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLS 177 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999995 55999999999999999999999987765443 5899999999999999999999984
Q ss_pred CCCCCCChhhHHH-HHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHHHHHHH-HHHHHHHHHhhccC
Q 014782 282 GDFKEVNGLNLYG-WITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLSGIFYH-LYNQSSYQALDDIS 359 (419)
Q Consensus 282 ~~~~~~~~~~~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~s 359 (419)
+.++..... ++.........+. ...+.. ... ... .+..+...+++.. ..+..++..+++.+
T Consensus 178 ----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~---------~~~--~~~~~~~~g~~~~~i~~~~~~~~~~~~~ 240 (292)
T COG0697 178 ----RLGPVTLALLLQLLLALLLLLLF-FLSGFG-API---------LSR--AWLLLLYLGVFSTGLAYLLWYYALRLLG 240 (292)
T ss_pred ----CCChHHHHHHHHHHHHHHHHHHH-Hhcccc-ccC---------CHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345555555 4433222222222 111111 111 111 2444555555544 45677888999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhh
Q 014782 360 PLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQA 407 (419)
Q Consensus 360 a~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~ 407 (419)
+...++..+++|+++++++++++||+++..+++|+++++.|+.+....
T Consensus 241 ~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 241 ASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999998876
No 19
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.86 E-value=3.1e-19 Score=168.14 Aligned_cols=245 Identities=13% Similarity=0.108 Sum_probs=168.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH-HhCcCC-----CCCCCH-HHHHHHHHH
Q 014782 113 KTLKLALVFGFWYFQNIVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLW-SLKLQP-----CPKISK-PFIIALLGP 185 (419)
Q Consensus 113 ~~l~~~~~~~~w~~~~~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~-~~~~~~-----~~~~~~-~~~~~~~~~ 185 (419)
+.+..++.+++| +...+..|. ..+.+ |..+.++|++++.+++.+.. ..++++ .++.++ +.+......
T Consensus 3 g~~~~i~a~~~w----g~~~~~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (256)
T TIGR00688 3 GIIVSLLASFLF----GYMYYYSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLC 76 (256)
T ss_pred cHHHHHHHHHHH----HHHHHHHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHH
Confidence 344555666666 777788998 45677 99999999999987765543 222211 111112 223445666
Q ss_pred HHHHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecccccccHHhHHHHH
Q 014782 186 ALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEVSFNFGGLWGAM 264 (419)
Q Consensus 186 ~l~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~~~l 264 (419)
+++..++..++++|+++++++.++++.++.|+|++++++ ++|||+++++|++++++++|+.++..++.+.+ .+++
T Consensus 77 g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l 152 (256)
T TIGR00688 77 GLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEAL 152 (256)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHH
Confidence 777888899999999999999999999999999999999 99999999999999999999997754332221 4678
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHHHHHH
Q 014782 265 ISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLSGIFY 344 (419)
Q Consensus 265 ~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (419)
++++|||.|.+..||.-++ +......+ .....++..+.....+...... ..... .|..++..++++
T Consensus 153 ~aa~~~a~~~i~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~l~~~g~~t 218 (256)
T TIGR00688 153 VLAFSFTAYGLIRKALKNT----DLAGFCLE-TLSLMPVAIYYLLQTDFATVQQ--------TNPFP-IWLLLVLAGLIT 218 (256)
T ss_pred HHHHHHHHHHHHHhhcCCC----CcchHHHH-HHHHHHHHHHHHHHhccCcccc--------cCchh-HHHHHHHHHHHH
Confidence 8999999999999997321 22222211 1111111111111111110000 01110 244555556666
Q ss_pred HHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHh
Q 014782 345 HLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILV 381 (419)
Q Consensus 345 ~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~ 381 (419)
...+.++..++++.++.+.+++.+++|++++++++++
T Consensus 219 ~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 219 GTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 6667788899999999999999999999999999765
No 20
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.86 E-value=2.6e-21 Score=170.26 Aligned_cols=274 Identities=19% Similarity=0.203 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHhc-----------CCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 014782 127 QNIVFNIYNKKALNV-----------FPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFHTIGHIS 195 (419)
Q Consensus 127 ~~~~~~~~~K~~l~~-----------~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 195 (419)
+...+.+.++.+... |.+...+.++|.....+..-++...+ +..+.+...-+.+..+++.+.+.+..
T Consensus 24 CYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir--~~~~~D~t~~~~YaAcs~sYLlAMVs 101 (337)
T KOG1580|consen 24 CYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIR--KKTEIDNTPTKMYAACSASYLLAMVS 101 (337)
T ss_pred eehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeec--ccccccCCcchHHHHHHHHHHHHHHh
Confidence 334445555555442 45567788888888877665543222 22334444456678888999999999
Q ss_pred hhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecccc-------cccHHhHHHHHHHH
Q 014782 196 ACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEV-------SFNFGGLWGAMISN 267 (419)
Q Consensus 196 ~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~-------~~~~~G~~~~l~s~ 267 (419)
.|.|++|+|.++..+-+++.||.++++++ +.+++++|++++.++++++||++....+. .....|-++.++|.
T Consensus 102 sN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL 181 (337)
T KOG1580|consen 102 SNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSL 181 (337)
T ss_pred ccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999876542 22357999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHH
Q 014782 268 IGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLSGIFYHLY 347 (419)
Q Consensus 268 l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (419)
-..+.....++|+ +...+-....+++++++++.+.+... +.+.+..|...+. ....+. .|+-+.+.++++.+.
T Consensus 182 ~mDGlTg~~Qdri-ra~yq~~g~~MM~~~NlwStL~Lg~g-~lfTGElweF~yF---~~RhP~--~~~~l~l~ai~s~LG 254 (337)
T KOG1580|consen 182 AMDGLTGSIQDRI-RASYQRTGTSMMFYTNLWSTLYLGAG-LLFTGELWEFFYF---VQRHPY--VFWDLTLLAIASCLG 254 (337)
T ss_pred HhcccchhHHHHH-HHhhccCchhhHHHHHHHHHHHhhhh-heehhhHHHHHHH---HHhccH--HHHHHHHHHHHHHhh
Confidence 9999999999887 32335567789999999999888766 4444444433111 111222 578888889999999
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhc
Q 014782 348 NQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATA 409 (419)
Q Consensus 348 ~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~ 409 (419)
+.+.|..+...+|++.|+++..+..++++.++++|+++++..||+|..+++.|...=....+
T Consensus 255 Q~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK 316 (337)
T KOG1580|consen 255 QWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGK 316 (337)
T ss_pred hHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999876554433
No 21
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.85 E-value=1.8e-20 Score=175.73 Aligned_cols=225 Identities=16% Similarity=0.237 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecccc----
Q 014782 179 IIALLGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEV---- 253 (419)
Q Consensus 179 ~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~---- 253 (419)
.+..+..+.+.+..++.++.||.+++++..+++.+++-+|+..++. +.+||+++.|.+++.+.++||+++..+|.
T Consensus 159 ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~ 238 (416)
T KOG2765|consen 159 AKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNS 238 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccc
Confidence 3444555566677899999999999999999999999999999999 88999999999999999999999987643
Q ss_pred ----cccHHhHHHHHHHHHHHHHHHHHHHhhcCCC-CCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcC
Q 014782 254 ----SFNFGGLWGAMISNIGFVLRNIYSKKSLGDF-KEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVG 328 (419)
Q Consensus 254 ----~~~~~G~~~~l~s~l~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~ 328 (419)
+....|.+++++|++.||+|.++.||...+| .++|-..+.+|.+++..+++.|..++.+...++. +. .+
T Consensus 239 ~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~-F~-----lP 312 (416)
T KOG2765|consen 239 DLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEER-FE-----LP 312 (416)
T ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCc-cc-----CC
Confidence 2347999999999999999999999998877 5899999999999999999998866654332111 11 11
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhh
Q 014782 329 KPSTFYFWVLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQAT 408 (419)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~ 408 (419)
....+...++.+.+..+...++|.++.-.++|+++.+...+..+++++.+.++-|.++++.+++|.+.|++|.+..++..
T Consensus 313 ~~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 313 SSTQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred CCceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 11102333344444455667999999999999999999999999999999999999999999999999999999998765
Q ss_pred c
Q 014782 409 A 409 (419)
Q Consensus 409 ~ 409 (419)
+
T Consensus 393 ~ 393 (416)
T KOG2765|consen 393 E 393 (416)
T ss_pred c
Confidence 4
No 22
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.84 E-value=1.1e-19 Score=158.69 Aligned_cols=286 Identities=17% Similarity=0.197 Sum_probs=235.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhh
Q 014782 121 FGFWYFQNIVFNIYNKKALNV--FPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFHTIGHISACV 198 (419)
Q Consensus 121 ~~~w~~~~~~~~~~~K~~l~~--~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 198 (419)
.+.+.+.++.+.+.||++++. |+--+.+.+.|.+++.+.+.++.+.+..+.+ ..+.+.+++.+++.....+..--
T Consensus 11 ~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR---~t~aK~WfpiSfLLv~MIyt~SK 87 (309)
T COG5070 11 SLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR---LTKAKKWFPISFLLVVMIYTSSK 87 (309)
T ss_pred HHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee---hhhhhhhcCHHHHHHHHHHhccc
Confidence 445557778999999999987 5555788889999998888777655443322 44466678889999999999999
Q ss_pred HhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeeccccc--------ccHHhHHHHHHHHHH
Q 014782 199 SFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEVS--------FNFGGLWGAMISNIG 269 (419)
Q Consensus 199 al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~~--------~~~~G~~~~l~s~l~ 269 (419)
+++|++++.+++.+.++.+.++..+. ++|.|++.....+.+++++.-+....+|.+ .| .|.+|....++.
T Consensus 88 sLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~Wm~~Ncls 166 (309)
T COG5070 88 SLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLWMFTNCLS 166 (309)
T ss_pred ceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEEEehhhHh
Confidence 99999999999999999999999999 999999999999999999999888888763 23 599999999999
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHH
Q 014782 270 FVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLSGIFYHLYNQ 349 (419)
Q Consensus 270 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (419)
.+.+....|+..+ -.+......++|.++.+..+++.+.+++|.++... ... ..... ....++.+|++.++..+
T Consensus 167 saafVL~mrkri~-ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n-~an---nl~~d--~l~am~ISgl~svgiSy 239 (309)
T COG5070 167 SAAFVLIMRKRIK-LTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGN-LAN---NLSVD--SLMAMFISGLCSVGISY 239 (309)
T ss_pred HHHHHHHHHHhhc-ccccchhhHHHHhhhHHHHHHHHHHHHhccCCcch-hhc---CCChH--HHHHHHHHHHHHhhhhh
Confidence 9999988887643 22445677899999999999999988887654332 110 01112 35678889999999999
Q ss_pred HHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhccccccccc
Q 014782 350 SSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATAKKKVEGEK 417 (419)
Q Consensus 350 ~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~~~~~~~~~ 417 (419)
+.-++++.++..++++++.++.....+.|.++|||+.+...+..+.+-+.+..+|...+.+++++++.
T Consensus 240 ~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q~q~~ 307 (309)
T COG5070 240 CSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQNQKD 307 (309)
T ss_pred ccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 98999999999999999999999999999999999999999999999999999999988776555443
No 23
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.84 E-value=2e-19 Score=161.48 Aligned_cols=290 Identities=14% Similarity=0.160 Sum_probs=233.9
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHhc--C-CChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHH
Q 014782 110 KPNKTLKLALVFGFWYFQNIVFNIYNKKALNV--F-PFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPA 186 (419)
Q Consensus 110 ~~~~~l~~~~~~~~w~~~~~~~~~~~K~~l~~--~-~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (419)
+.+++.+..+++...++....+.+..+++++. | |+.|.+++.|+++-..+.++.... .+..+ ....||.+..++
T Consensus 37 ~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~-~~~k~--r~iP~rtY~~la 113 (367)
T KOG1582|consen 37 DKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQL-IQTKR--RVIPWRTYVILA 113 (367)
T ss_pred cCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEe-ecccc--eecchhHhhhhH
Confidence 44566777777777777788888999999987 4 377999999999876655443211 11111 123478888889
Q ss_pred HHHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeeccc----ccccHHhHH
Q 014782 187 LFHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTE----VSFNFGGLW 261 (419)
Q Consensus 187 l~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~----~~~~~~G~~ 261 (419)
.+..+.+.+.+-++.|++.+...+.+++..+.+++.+. +-|+|+++..+.+..+..+|.++....| .++|..|+.
T Consensus 114 ~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~ 193 (367)
T KOG1582|consen 114 FLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVM 193 (367)
T ss_pred hhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHH
Confidence 99999999999999999999999999999999999999 9999999999999999999999988776 467889999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHHH
Q 014782 262 GAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLSG 341 (419)
Q Consensus 262 ~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (419)
+.-++.++.|+-..++++.++. .+-+..++.+|...+|.++++....+... .. ..|.... -++. ..+...++.+
T Consensus 194 mIsgALl~DA~iGNvQEk~m~~-~~~ss~EmvfySy~iG~vflf~~mvlTge-~f-~a~~fca--ehp~-~tyGy~~~~s 267 (367)
T KOG1582|consen 194 MISGALLADAVIGNVQEKAMKM-NPASSSEMVFYSYGIGFVFLFAPMVLTGE-LF-SAWTFCA--EHPV-RTYGYAFLFS 267 (367)
T ss_pred HHHHHHHHHHHhhHHHHHHHhh-CCCCcceEEEeeecccHHHHHHHHHhccc-ch-hhhHHHH--hCcH-hHHHHHHHHH
Confidence 9999999999999999998774 34566788999998999888777554321 11 1122111 1111 1477777778
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhh
Q 014782 342 IFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQAT 408 (419)
Q Consensus 342 ~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~ 408 (419)
+.+++...+....++..+|.+++.++..+..+++++++++|..++|.+..-|..+++.|+++..+.+
T Consensus 268 ~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 268 LAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred HHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 8888888777888999999999999999999999999999999999999999999999999877765
No 24
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.82 E-value=1.7e-17 Score=148.11 Aligned_cols=255 Identities=14% Similarity=0.142 Sum_probs=200.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhHhcccchhHHHHHH
Q 014782 133 IYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFHTIGHISACVSFSKVAVSFTHVIK 212 (419)
Q Consensus 133 ~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~li~ 212 (419)
-+.|.++..++ |.-.+++|..++++++..+++-.+ ++.++++++.....|......|.++|.+++.+|.+.+..+-
T Consensus 29 s~Ak~LFP~vG-~~g~t~lRl~~aaLIll~l~RPwr---~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiE 104 (292)
T COG5006 29 SFAKSLFPLVG-AAGVTALRLAIAALILLALFRPWR---RRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIE 104 (292)
T ss_pred HHHHHHccccC-hhhHHHHHHHHHHHHHHHHhhHHH---hccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhh
Confidence 36788887777 899999999999998887764322 35678889999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhCCccChhHHHHHHHHHhhhheeeccc---ccccHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCCh
Q 014782 213 SAEPVFAVVFSSFLGDIYPLKVWLSILPIVLGCSLAAVTE---VSFNFGGLWGAMISNIGFVLRNIYSKKSLGDFKEVNG 289 (419)
Q Consensus 213 ~~~Pi~~~lls~~l~er~~~~~~~~v~l~~~Gv~l~~~~~---~~~~~~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~ 289 (419)
.+.|+.+.+++. +| .++.+.+.+.+.|+.+..-.+ .+.|..|..+++++..||++|.+..||.-+ ..+.
T Consensus 105 F~GPL~vA~~~s---Rr--~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~---~~~g 176 (292)
T COG5006 105 FTGPLAVALLSS---RR--LRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGR---AEHG 176 (292)
T ss_pred hccHHHHHHHhc---cc--hhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcc---cCCC
Confidence 999998888774 22 346666777778877654322 456899999999999999999999999832 3566
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHH-HHHHHHhhccChhHHHHHHH
Q 014782 290 LNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLSGIFYHLYN-QSSYQALDDISPLTFSVGNT 368 (419)
Q Consensus 290 ~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~sa~~~sv~~~ 368 (419)
..-+.+-+.++.++.+|+.....++.... +. +....+..++++...- .+-..++++.++-++++...
T Consensus 177 ~~g~a~gm~vAaviv~Pig~~~ag~~l~~----------p~--ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlS 244 (292)
T COG5006 177 TAGVAVGMLVAALIVLPIGAAQAGPALFS----------PS--LLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLS 244 (292)
T ss_pred chHHHHHHHHHHHHHhhhhhhhcchhhcC----------hH--HHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHH
Confidence 67777888889999999866544443321 11 3444444455544443 34556799999999999999
Q ss_pred HHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhccc
Q 014782 369 MKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATAKK 411 (419)
Q Consensus 369 l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~~~ 411 (419)
++|.++.+.|++++||.+|..||+|++.++.++.-.+..-+|+
T Consensus 245 LePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~ 287 (292)
T COG5006 245 LEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKP 287 (292)
T ss_pred hhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence 9999999999999999999999999999999987666554443
No 25
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.79 E-value=1.2e-17 Score=150.82 Aligned_cols=281 Identities=22% Similarity=0.292 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHHHHhc-------CCChHHHHHHHHHHHHHHHHHHHHhCcCCC-----C---CCC-----HHHHHHHHHH
Q 014782 126 FQNIVFNIYNKKALNV-------FPFPWLLASFQLFAGSVWMLVLWSLKLQPC-----P---KIS-----KPFIIALLGP 185 (419)
Q Consensus 126 ~~~~~~~~~~K~~l~~-------~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~-----~---~~~-----~~~~~~~~~~ 185 (419)
..+..+.+..||.=+. |++|+..+..-|+.-.+++.++...+.+.. . .+. .-.-+.+++.
T Consensus 13 vsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~P 92 (372)
T KOG3912|consen 13 VSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPP 92 (372)
T ss_pred hhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecCh
Confidence 3445566788887552 778888877766655555554433221110 0 000 0013445678
Q ss_pred HHHHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecccc----------c
Q 014782 186 ALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEV----------S 254 (419)
Q Consensus 186 ~l~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~----------~ 254 (419)
+++...+..+.|.|+.+++++.+|+++....+|+.+++. +++++++.+||+|+....+|++++...|. +
T Consensus 93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s 172 (372)
T KOG3912|consen 93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYS 172 (372)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccc
Confidence 999999999999999999999999999999999999999 99999999999999999999998876532 2
Q ss_pred ccHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHh----cC------hh-hhhhhhhh
Q 014782 255 FNFGGLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFV----EG------SQ-WIQGYHNA 323 (419)
Q Consensus 255 ~~~~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~----~~------~~-~~~~~~~~ 323 (419)
.-..|+++.+++-+.-|.+.++.+|.+++ .+++|.+..+|..++|.+++...++.. .+ ++ ..+++.+.
T Consensus 173 ~iitGdllIiiaqiivaiQ~v~Eek~l~~-~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~ 251 (372)
T KOG3912|consen 173 SIITGDLLIIIAQIIVAIQMVCEEKQLKK-SNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDA 251 (372)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhhhh-ccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHH
Confidence 33689999999999999999999998774 689999999999999976665544332 11 11 12345555
Q ss_pred hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHH
Q 014782 324 IAAVGKPSTFYFWVLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFL 403 (419)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l 403 (419)
++..+....+...+....+.-.++|+......+..|+.+-.+...++..+.++++..+..|.+...|+.|.++.+.|+.+
T Consensus 252 ~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~l 331 (372)
T KOG3912|consen 252 FAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIIL 331 (372)
T ss_pred HHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555443123223323333335678888889999999999999999999999999999999999999999999999999
Q ss_pred HHhh
Q 014782 404 YSQA 407 (419)
Q Consensus 404 ~~~~ 407 (419)
|+..
T Consensus 332 Y~~i 335 (372)
T KOG3912|consen 332 YNQI 335 (372)
T ss_pred HHHH
Confidence 9853
No 26
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.79 E-value=3.2e-20 Score=166.39 Aligned_cols=266 Identities=17% Similarity=0.137 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhHhcccc
Q 014782 125 YFQNIVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFHTIGHISACVSFSKVA 204 (419)
Q Consensus 125 ~~~~~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~ 204 (419)
|+++.++.+..|...+ .|..+.-.|+++-.+...++....+... --+....+.+++.|+....+..+.|+|++|++
T Consensus 47 ~ff~~~~vv~t~~~e~---~p~e~a~~r~l~~mlit~pcliy~~~~v-~gp~g~R~~LiLRg~mG~tgvmlmyya~~~ms 122 (346)
T KOG4510|consen 47 YFFNSCMVVSTKVLEN---DPMELASFRLLVRMLITYPCLIYYMQPV-IGPEGKRKWLILRGFMGFTGVMLMYYALMYMS 122 (346)
T ss_pred HHHhhHHHhhhhhhcc---ChhHhhhhhhhhehhhhheEEEEEeeee-ecCCCcEEEEEeehhhhhhHHHHHHHHHhhcc
Confidence 5667777766666543 2777777886666555544432222111 01112233446668888889999999999999
Q ss_pred hhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecccc--------------cccHHhHHHHHHHHHH
Q 014782 205 VSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEV--------------SFNFGGLWGAMISNIG 269 (419)
Q Consensus 205 ~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~--------------~~~~~G~~~~l~s~l~ 269 (419)
.+.+.+|..++|+|+.++++ ++||++++...++..+.+.||+++..+.. +.+..|...++.+++.
T Consensus 123 laDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~aai~s~lf 202 (346)
T KOG4510|consen 123 LADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVAAISSVLF 202 (346)
T ss_pred hhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHHHHHhHhh
Confidence 99999999999999999999 99999999999999999999999865421 2346788888888888
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHH
Q 014782 270 FVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLSGIFYHLYNQ 349 (419)
Q Consensus 270 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (419)
-|.-.++.|++ .++.+....+.|..+++++..+..........+... +.. +++++..|+.++..++
T Consensus 203 ~asvyIilR~i---Gk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~c--------gkd---r~l~~~lGvfgfigQI 268 (346)
T KOG4510|consen 203 GASVYIILRYI---GKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHC--------GKD---RWLFVNLGVFGFIGQI 268 (346)
T ss_pred hhhHHHHHHHh---hccccEEEEehHHHHHHHHHHHHHHhhccceecCcc--------ccc---eEEEEEehhhhhHHHH
Confidence 88888888887 345777777777777777666554333332222221 111 5566667788888888
Q ss_pred HHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhh
Q 014782 350 SSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQAT 408 (419)
Q Consensus 350 ~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~ 408 (419)
+..+.+++--|...++..+...+++.++.+++|||.++++.|.|+++++.+..+....|
T Consensus 269 llTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 269 LLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred HHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 88888888888888999999999999999999999999999999999999887765443
No 27
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.78 E-value=3e-16 Score=150.20 Aligned_cols=263 Identities=18% Similarity=0.191 Sum_probs=187.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 014782 116 KLALVFGFWYFQNIVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFHTIGHIS 195 (419)
Q Consensus 116 ~~~~~~~~w~~~~~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 195 (419)
..++.+++| .+..+..|.+. .++.++.+ |..++.+++.......+.+ +...++.+..-+..|++...++.+
T Consensus 5 ~~lia~~~w----Gs~g~~~k~~~-g~~~~~~~---~~~~g~l~~~~~~~~~~~~-~~~~~~~~~~g~l~G~~w~ig~~~ 75 (290)
T TIGR00776 5 IALIPALFW----GSFVLINVKIG-GGPYSQTL---GTTFGALILSIAIAIFVLP-EFWALSIFLVGLLSGAFWALGQIN 75 (290)
T ss_pred HHHHHHHHH----hhhHHHHhccC-CCHHHHHH---HHHHHHHHHHHHHHHHhCC-cccccHHHHHHHHHHHHHHhhhhh
Confidence 445556666 66666777765 45533332 5666666554332221111 122245555566677778899999
Q ss_pred hhhHhcccchhHHHHHHH-hHHHHHHHHHH-HhCCccChhH----HHHHHHHHhhhheeeccccc-------cc-HHhHH
Q 014782 196 ACVSFSKVAVSFTHVIKS-AEPVFAVVFSS-FLGDIYPLKV----WLSILPIVLGCSLAAVTEVS-------FN-FGGLW 261 (419)
Q Consensus 196 ~~~al~~~~~~~~~li~~-~~Pi~~~lls~-~l~er~~~~~----~~~v~l~~~Gv~l~~~~~~~-------~~-~~G~~ 261 (419)
++.+.++++++.+..+.. +.++++.+++. ++|||.++++ ++|++++++|+.++...+.+ .+ ..|++
T Consensus 76 ~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~ 155 (290)
T TIGR00776 76 QFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGIL 155 (290)
T ss_pred HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHH
Confidence 999999999999999988 88899999999 9999999999 99999999999988653221 33 68999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHH---HHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHH
Q 014782 262 GAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITI---ISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVL 338 (419)
Q Consensus 262 ~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~---~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (419)
++++|+++|+.|.+..|+. + .++.+..+.+.. .+..+..+... +..++. .. ..+..+
T Consensus 156 ~~l~sg~~y~~~~~~~~~~---~--~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~-----------~~--~~~~~~ 215 (290)
T TIGR00776 156 LLLMSTIGYLVYVVVAKAF---G--VDGLSVLLPQAIGMVIGGIIFNLGHI--LAKPLK-----------KY--AILLNI 215 (290)
T ss_pred HHHHHHHHHHHHHHHHHHc---C--CCcceehhHHHHHHHHHHHHHHHHHh--cccchH-----------HH--HHHHHH
Confidence 9999999999999999976 1 577766444433 33332222211 101111 01 122333
Q ss_pred HHHHHHHHHHHHHHHHhh-ccChhHHHHHHHHHHHHHHHHHHHhhcccccchhh----hhHHHHHHHHHHHHhh
Q 014782 339 LSGIFYHLYNQSSYQALD-DISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNA----LGSAIAIFGTFLYSQA 407 (419)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~-~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~----iG~~lil~Gv~l~~~~ 407 (419)
..|++....+.+.+...+ +.++.+.++...++|+.+++++++++||..+..++ +|+++++.|+.+....
T Consensus 216 ~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 216 LPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 366665455556667788 99999999999999999999999999999999999 9999999999876543
No 28
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.73 E-value=8e-15 Score=134.64 Aligned_cols=277 Identities=16% Similarity=0.156 Sum_probs=200.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHh-Cc-CCCCC--CCHHHHHHHHHHHH
Q 014782 112 NKTLKLALVFGFWYFQNIVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSL-KL-QPCPK--ISKPFIIALLGPAL 187 (419)
Q Consensus 112 ~~~l~~~~~~~~w~~~~~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~-~~-~~~~~--~~~~~~~~~~~~~l 187 (419)
++.+.....-++| +...++.|.+- ..+ +..+...|.+....++...... ++ +.... .+++.+..+...++
T Consensus 7 ~Gil~~l~Ay~lw----G~lp~y~kll~-~~~-~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~ 80 (293)
T COG2962 7 KGILLALLAYLLW----GLLPLYFKLLE-PLP-ATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTAL 80 (293)
T ss_pred chhHHHHHHHHHH----HHHHHHHHHHc-cCC-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHH
Confidence 3344444444455 77777777754 556 7788899999887766544322 11 11111 12234445555566
Q ss_pred HHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecccccccHHhHHHHHHH
Q 014782 188 FHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEVSFNFGGLWGAMIS 266 (419)
Q Consensus 188 ~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~~~l~s 266 (419)
+...+...+.||.+.-.+-.+++=....|++.++++. ++|||+++.||++++++.+||..-.....+..+..+.+
T Consensus 81 li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~l---- 156 (293)
T COG2962 81 LIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALAL---- 156 (293)
T ss_pred HHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH----
Confidence 6677778899999998888999999999999999999 99999999999999999999998776666777655554
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHHHHHHHH
Q 014782 267 NIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLSGIFYHL 346 (419)
Q Consensus 267 ~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (419)
+++|++|...-|+. ++|+.+-.+...+.-.+..+...+..+.... . .. .+... .+.+++..|..+..
T Consensus 157 a~sf~~Ygl~RK~~-----~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~-~-~~-----~~~~~-~~~LLv~aG~vTav 223 (293)
T COG2962 157 ALSFGLYGLLRKKL-----KVDALTGLTLETLLLLPVALIYLLFLADSGQ-F-LQ-----QNANS-LWLLLVLAGLVTAV 223 (293)
T ss_pred HHHHHHHHHHHHhc-----CCchHHhHHHHHHHHhHHHHHHHHHHhcCch-h-hh-----cCCch-HHHHHHHhhHHHHH
Confidence 45899999886665 3677777666655555444444333332221 0 00 11222 47777778877665
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhccc
Q 014782 347 YNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATAKK 411 (419)
Q Consensus 347 ~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~~~ 411 (419)
--.+...+.++.+=.+.++..|++|....+++++++||+++..+++..+.+..|+.+|....-++
T Consensus 224 pL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~ 288 (293)
T COG2962 224 PLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYT 288 (293)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54555567889999999999999999999999999999999999999999999999999765543
No 29
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.73 E-value=2.5e-17 Score=148.68 Aligned_cols=268 Identities=18% Similarity=0.255 Sum_probs=205.8
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHH-hCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhHhcc-cchhHHH
Q 014782 133 IYNKKALNVFPF-PWLLASFQLFAGSVWMLVLWS-LKLQPCPKISKPFIIALLGPALFHTIGHISACVSFSK-VAVSFTH 209 (419)
Q Consensus 133 ~~~K~~l~~~~~-P~~l~~~r~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~-~~~~~~~ 209 (419)
+.-+.+.+..|. -..+++.|+++.+.--+++.. .... +++.+ +|.++.....+...+.+.|+++++ ++.+...
T Consensus 20 v~lE~L~~~~pgsgNLITFaqFlFia~eGlif~skf~~~-k~kip---lk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHi 95 (330)
T KOG1583|consen 20 VFLELLVRNEPGSGNLITFAQFLFIATEGLIFTSKFFTV-KPKIP---LKDYAITVAMFFIVNVTNNYALKFNIPMPLHI 95 (330)
T ss_pred HHHHHHHHhCCCCeeehHHHHHHHHHHhceeeecccccc-CCCCc---hhhhheehheeeeeeeeccceeeecccceEEE
Confidence 445666665542 368899999988775554431 1111 23444 455566677788889999999998 8999999
Q ss_pred HHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeeccc---cc-------c-----c----HHhHHHHHHHHHH
Q 014782 210 VIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTE---VS-------F-----N----FGGLWGAMISNIG 269 (419)
Q Consensus 210 li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~---~~-------~-----~----~~G~~~~l~s~l~ 269 (419)
++++.+++-+|++++ ++|+|++.+|+.++++..+|+++.+..+ .. . + ..|+.+..++.+.
T Consensus 96 IfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~ 175 (330)
T KOG1583|consen 96 IFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLL 175 (330)
T ss_pred EEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999876421 10 0 0 3699999999999
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhh---------cCCchHHHHHHHHH
Q 014782 270 FVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAA---------VGKPSTFYFWVLLS 340 (419)
Q Consensus 270 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 340 (419)
.|.-.+++++.+++ .+-++-+.++|....+....+ +.. .+..+.+....+. ...+. .|+.++.+
T Consensus 176 sa~mgiyqE~~Y~k-yGKh~~EalFytH~LsLP~Fl----f~~-~div~~~~~~~~se~~~~p~~g~~vP~-~~~yLl~n 248 (330)
T KOG1583|consen 176 SAYMGIYQETTYQK-YGKHWKEALFYTHFLSLPLFL----FMG-DDIVSHWRLAFKSESYLIPLLGFKVPS-MWVYLLFN 248 (330)
T ss_pred HHHHHHHHHHHHHH-hcCChHHHHHHHHHhccchHH----Hhc-chHHHHHHHHhcCcceeccccCccccH-HHHHHHHH
Confidence 99999999998774 456788999999887765433 222 2222222221111 11222 68889999
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhccc
Q 014782 341 GIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATAKK 411 (419)
Q Consensus 341 ~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~~~ 411 (419)
.+..+++.-..|.+..++++++++++..+++.++.+++++.|+++++++.|+|.+++++|..+|.-...+.
T Consensus 249 ~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~ 319 (330)
T KOG1583|consen 249 VLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVWNHP 319 (330)
T ss_pred HHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99998888788888999999999999999999999999999999999999999999999999998665443
No 30
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.72 E-value=1e-15 Score=142.13 Aligned_cols=212 Identities=19% Similarity=0.229 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeeccccc
Q 014782 176 KPFIIALLGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEVS 254 (419)
Q Consensus 176 ~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~~ 254 (419)
+++...+...++++++.+.+.+.++++++++++++++.+..++++++++ ++|+|++++||+++++.++|+.++..++..
T Consensus 14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 4556667777999999999999999999999999999999999999999 999999999999999999999987543211
Q ss_pred -----------------ccHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhh
Q 014782 255 -----------------FNFGGLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWI 317 (419)
Q Consensus 255 -----------------~~~~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~ 317 (419)
....|+++.++++++.|+..|+.+|++|++ +.+.+........+|.++.+......++....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~-~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~ 172 (244)
T PF04142_consen 94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRS-NVSLWIQNMQLYLFGILFNLLALLLSDGSAIS 172 (244)
T ss_pred ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 125899999999999999999999999863 45555555555667776666654443332222
Q ss_pred h-hhhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHH
Q 014782 318 Q-GYHNAIAAVGKPSTFYFWVLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAI 396 (419)
Q Consensus 318 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~l 396 (419)
+ ++. ..++.. .|..++..++.+.... ..+++.+...-+....+..+++.++++++||.+++...++|.++
T Consensus 173 ~~g~f---~G~~~~--~~~~i~~~a~gGllva----~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 173 ESGFF---HGYSWW--VWIVIFLQAIGGLLVA----FVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred cCCch---hhcchH--HHHHHHHHHHhhHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 1 221 112222 4556666666555443 45899999999999999999999999999999999999999875
Q ss_pred H
Q 014782 397 A 397 (419)
Q Consensus 397 i 397 (419)
+
T Consensus 244 V 244 (244)
T PF04142_consen 244 V 244 (244)
T ss_pred C
Confidence 3
No 31
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.70 E-value=4.4e-16 Score=134.78 Aligned_cols=148 Identities=36% Similarity=0.587 Sum_probs=127.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCC----CCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhh-hcCCchHH
Q 014782 259 GLWGAMISNIGFVLRNIYSKKSLGDF----KEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIA-AVGKPSTF 333 (419)
Q Consensus 259 G~~~~l~s~l~~a~~~v~~k~~~~~~----~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 333 (419)
|.+++++|.++.|+++++.|+.++++ ++.++.++++|.+..+.++++|.++..|.+........... ........
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 78999999999999999999998874 68999999999999999999999998887764332221111 11111126
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHh
Q 014782 334 YFWVLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQ 406 (419)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~ 406 (419)
+..++.+|++++++|+..+.+++++||+++++.+.+|.+..+++|+++|||+++..+++|+++.+.|+++|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999975
No 32
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.68 E-value=4.4e-14 Score=133.38 Aligned_cols=276 Identities=17% Similarity=0.194 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHHHHHHHHhC-----cCCCCCCC------HHHHHHHHHHHHHHHHH
Q 014782 127 QNIVFNIYNKKALNVFP---FPWLLASFQLFAGSVWMLVLWSLK-----LQPCPKIS------KPFIIALLGPALFHTIG 192 (419)
Q Consensus 127 ~~~~~~~~~K~~l~~~~---~P~~l~~~r~~~~~~~l~~~~~~~-----~~~~~~~~------~~~~~~~~~~~l~~~~~ 192 (419)
.+.+.....|+.-+.-. .|.+..++-=++-.+++....... .+..+.+. +++..+....++++++.
T Consensus 26 ~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~iYalq 105 (345)
T KOG2234|consen 26 QNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALIYALQ 105 (345)
T ss_pred HHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHHHHHh
Confidence 34666677777655421 244444443333333333222221 11112222 22345556668899998
Q ss_pred HHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeeccc-----------ccccHHhH
Q 014782 193 HISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTE-----------VSFNFGGL 260 (419)
Q Consensus 193 ~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~-----------~~~~~~G~ 260 (419)
+.+.+.++.+.+++++++...+..+.|+++++ ++++|++++||.++++.+.|+.++-.+. .+..+.|.
T Consensus 106 Nnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~ 185 (345)
T KOG2234|consen 106 NNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLGL 185 (345)
T ss_pred hhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhhH
Confidence 88999999999999999999999999999999 9999999999999999999999886211 12347899
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHH
Q 014782 261 WGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLS 340 (419)
Q Consensus 261 ~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (419)
...+.++++.++..+|.+|++++ .+.+-+....-...+|.++.+...+..++.... +..-+ .|.....|..++..
T Consensus 186 ~avl~~c~~SgfAgvYfEkiLK~-s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~--~~gff--~G~s~~vw~vVl~~ 260 (345)
T KOG2234|consen 186 VAVLVACFLSGFAGVYFEKILKG-SNVSLWIRNIQLYFFGILFNLLTILLQDGEAIN--EYGFF--YGYSSIVWLVVLLN 260 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHHHHhhccccccc--cCCcc--ccccHHHHHHHHHH
Confidence 99999999999999999999875 345544444444456666665554444433221 11111 23333257777777
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhccc
Q 014782 341 GIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATAKK 411 (419)
Q Consensus 341 ~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~~~ 411 (419)
++.+.+..+ .+++.+-..-.....+..+++.+.++.+||-++|....+|+.+++.++.+|...+.++
T Consensus 261 a~gGLlvs~----v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 261 AVGGLLVSL----VMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred hccchhHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 776665543 3688888888888888999999999999999999999999999999999999665543
No 33
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.54 E-value=1.7e-15 Score=135.37 Aligned_cols=261 Identities=12% Similarity=0.085 Sum_probs=198.3
Q ss_pred HHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhHhcccchhH
Q 014782 129 IVFNIYNKKALNV-FPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFHTIGHISACVSFSKVAVSF 207 (419)
Q Consensus 129 ~~~~~~~K~~l~~-~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~ 207 (419)
.+..+.+.++-.. .+.|...+++.+..-+++--+....++ +.-+..|++++++++...-++++...|.||++...
T Consensus 31 t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~----~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtS 106 (336)
T KOG2766|consen 31 TSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRR----KYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTS 106 (336)
T ss_pred HcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhh----HHHHHHHHHhhheeEEeecccEEEeeehhhcchHH
Confidence 3344555555554 677888888887766655444433332 22244577788889988889999999999999999
Q ss_pred HHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecccc--------cccHHhHHHHHHHHHHHHHHHHHHH
Q 014782 208 THVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEV--------SFNFGGLWGAMISNIGFVLRNIYSK 278 (419)
Q Consensus 208 ~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~--------~~~~~G~~~~l~s~l~~a~~~v~~k 278 (419)
.+++.+-..+.+++++| ++|.|+.+.++.|++++++|+.++...|. +....|+++.++++-+||..++..+
T Consensus 107 i~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EE 186 (336)
T KOG2766|consen 107 IMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEE 186 (336)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHH
Confidence 99999999999999999 99999999999999999999998876542 2346899999999999999999999
Q ss_pred hhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 014782 279 KSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLSGIFYHLYNQSSYQALDDI 358 (419)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 358 (419)
.+.+ +.|..+++...+++|+++...- +.+|..+... .+ |+.. ....+...++-++..-+.-..++..
T Consensus 187 flvk---n~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~t-l~-----w~~~---i~~yl~f~L~MFllYsl~pil~k~~ 253 (336)
T KOG2766|consen 187 FLVK---NADRVELMGFLGLFGAIISAIQ-FIFERHHVST-LH-----WDSA---IFLYLRFALTMFLLYSLAPILIKTN 253 (336)
T ss_pred HHHh---cCcHHHHHHHHHHHHHHHHHHH-Hhhhccceee-Ee-----ehHH---HHHHHHHHHHHHHHHHhhHHheecC
Confidence 8854 4788999999999999888776 4455433221 11 1111 2222224444444443444568888
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhh
Q 014782 359 SPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQAT 408 (419)
Q Consensus 359 sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~ 408 (419)
++..+++.......+++++ ..||-+.+|...+..+.+..|..+|..++
T Consensus 254 ~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re 301 (336)
T KOG2766|consen 254 SATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTRE 301 (336)
T ss_pred CceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccc
Confidence 9988888888888898887 78899999999999999999999996543
No 34
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.23 E-value=7.1e-11 Score=97.90 Aligned_cols=119 Identities=20% Similarity=0.408 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-hCcCCCCCCCHHHHHHHHHHHHH-HHHHHHHhhhHhcccchh
Q 014782 129 IVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWS-LKLQPCPKISKPFIIALLGPALF-HTIGHISACVSFSKVAVS 206 (419)
Q Consensus 129 ~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~al~~~~~~ 206 (419)
+...+..|...++++ |...+++|+..+.+ +.+... .+..+....+.+++...+..+++ ..++..+.+.++++++++
T Consensus 4 a~~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 81 (126)
T PF00892_consen 4 AIYSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISAS 81 (126)
T ss_pred eeHHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchh
Confidence 667788999999987 99999999999987 433332 22222345566667777777777 578899999999999999
Q ss_pred HHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheee
Q 014782 207 FTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAA 249 (419)
Q Consensus 207 ~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~ 249 (419)
.++++..++|+++.++++ ++||++++++++|++++++|++++.
T Consensus 82 ~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 82 IVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999998753
No 35
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.19 E-value=1.3e-10 Score=106.95 Aligned_cols=193 Identities=18% Similarity=0.189 Sum_probs=126.8
Q ss_pred cchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecc--------------------cc-------c
Q 014782 203 VAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVT--------------------EV-------S 254 (419)
Q Consensus 203 ~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~--------------------~~-------~ 254 (419)
++++.....++..++++++.++ +.+||++..++++.++...|+...... +. +
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 4677788889999999999999 889998899999999988888742211 10 1
Q ss_pred ccHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHH
Q 014782 255 FNFGGLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFY 334 (419)
Q Consensus 255 ~~~~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (419)
..+.|....+.+.++.++..++.++..+++ +.....-......++.+..... ............. ...+.....+
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~-~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~ 156 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDG-DTMFWSRNLQLPLFGLFSTFSV-LLWSDGTLISNFG---FFIGYPTAVW 156 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCC-CCchHHHHHHHHHHHHHHHHHH-HhhcccchhhccC---cccCCchHHH
Confidence 236788888999999999999999985532 2211111111222222221111 1111111111000 0011222123
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHH
Q 014782 335 FWVLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLY 404 (419)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~ 404 (419)
..++..++ ...+..+++++.++.+.++...++++++.++++++|||+++..+++|+.+++.|+++|
T Consensus 157 ~~~~~~a~----~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 157 IVGLLNVG----GGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHHHh----cCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 33333333 2334556799999999999999999999999999999999999999999999998765
No 36
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.12 E-value=3.3e-10 Score=97.97 Aligned_cols=220 Identities=17% Similarity=0.171 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecccc--cc
Q 014782 179 IIALLGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEV--SF 255 (419)
Q Consensus 179 ~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~--~~ 255 (419)
.++..+.+++..+.++.+..+++.++++.++.+.++.--|+.++++ ++|+|+...++++.++++.|++++.+.|. ..
T Consensus 53 ~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~ 132 (290)
T KOG4314|consen 53 FIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHAD 132 (290)
T ss_pred eeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhh
Confidence 3445666777888999999999999999999999999999999999 99999999999999999999999987664 34
Q ss_pred cHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHH----HHH-HHHhcChhhhhhhhhhhhhcCCc
Q 014782 256 NFGGLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYL----FPV-AIFVEGSQWIQGYHNAIAAVGKP 330 (419)
Q Consensus 256 ~~~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l----~~~-~~~~~~~~~~~~~~~~~~~~~~~ 330 (419)
++.|+.++.+|+...|+|.|+.|+...+. .. -....+++..|..=+ .|. .+.+.+-...+++. ..+
T Consensus 133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnA-n~--Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA------~~P 203 (290)
T KOG4314|consen 133 EIIGIACAVGSAFMAALYKVLFKMFIGNA-NF--GDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFA------AAP 203 (290)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccC-cc--hhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHh------hCC
Confidence 68999999999999999999999987642 22 222233333332221 121 11222222112122 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhcc
Q 014782 331 STFYFWVLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATAK 410 (419)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~~ 410 (419)
|..+...+.....+|+.....+....|...|+......+.....+.++-+-..+...+.|..++..|..+.-....+
T Consensus 204 ---WG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~ 280 (290)
T KOG4314|consen 204 ---WGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDK 280 (290)
T ss_pred ---chhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccch
Confidence 44555555555566766666788889999999988888888899988877778899999999999998877654433
No 37
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.12 E-value=7.7e-10 Score=89.22 Aligned_cols=123 Identities=20% Similarity=0.250 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-hCcCCC-CCCCHHHHHHHHHHHHHHHHHHHHhhhHhcccc
Q 014782 127 QNIVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWS-LKLQPC-PKISKPFIIALLGPALFHTIGHISACVSFSKVA 204 (419)
Q Consensus 127 ~~~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~-~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~ 204 (419)
+.....++.|..++..+ |.+-++.|.++....+..... .++.+. ...+.+.|..+...|+....+..+++.|++.-.
T Consensus 14 fa~L~~iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf~ALk~G~ 92 (140)
T COG2510 14 FAGLTPIFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYFRALKKGK 92 (140)
T ss_pred HHHHHHHHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHHHHHhcCC
Confidence 33667789999998888 999999999988887765443 333222 234567777788888888899999999999999
Q ss_pred hhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeec
Q 014782 205 VSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAV 250 (419)
Q Consensus 205 ~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~ 250 (419)
++...-+..++|+++.++++ ++|||++..+|+|++++.+|+.+++.
T Consensus 93 as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 93 ASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred cceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 99999999999999999999 99999999999999999999998763
No 38
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.04 E-value=1.5e-09 Score=89.85 Aligned_cols=124 Identities=19% Similarity=0.318 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHHHHH-HHH
Q 014782 268 IGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLSGIF-YHL 346 (419)
Q Consensus 268 l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 346 (419)
++||.+.++.|+..++ .|+....++....+.+ +++.....+...... .+.. .+......+++ ...
T Consensus 1 ~~~a~~~~~~k~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~--~~~~~~~~~~~~~~~ 66 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK---ISPLSITFWRFLIAGI-LLILLLILGRKPFKN--------LSPR--QWLWLLFLGLLGTAL 66 (126)
T ss_pred ceeeeHHHHHHHHhcc---CCHHHHHHHHHHHHHH-HHHHHHhhccccccC--------CChh--hhhhhhHhhccceeh
Confidence 4789999999998653 8999999999998887 666655544332111 1111 13333444444 456
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHH
Q 014782 347 YNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYS 405 (419)
Q Consensus 347 ~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~ 405 (419)
.+.+.+.++++.++...++..+++|+++.++++++++|+++..+++|+++++.|+++..
T Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 67 AYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 66778889999999999999999999999999999999999999999999999998764
No 39
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.02 E-value=1.4e-09 Score=89.18 Aligned_cols=104 Identities=18% Similarity=0.350 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHhCcCC---CCCCCHHHHHHHHHHHHHHH-HHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-
Q 014782 150 SFQLFAGSVWMLVLWSLKLQP---CPKISKPFIIALLGPALFHT-IGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS- 224 (419)
Q Consensus 150 ~~r~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~-~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~- 224 (419)
.+|+.++.+++......+++. .+..+++.+......+++.. .+..++++|+++.+ +.+..+.++.|+|++++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 467777777665543332111 11122334455566566665 78899999999999 5888999999999999999
Q ss_pred HhCCccChhHHHHHHHHHhhhheeeccccc
Q 014782 225 FLGDIYPLKVWLSILPIVLGCSLAAVTEVS 254 (419)
Q Consensus 225 ~l~er~~~~~~~~v~l~~~Gv~l~~~~~~~ 254 (419)
++|||+++++|++++++++|++++..+|.+
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999998877654
No 40
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.01 E-value=7.1e-08 Score=89.70 Aligned_cols=208 Identities=20% Similarity=0.261 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHhcccchhHHHHHH-HhHHHHHHHHHH-HhCCccChhHH----HHHHHHHhhhheeec
Q 014782 177 PFIIALLGPALFHTIGHISACVSFSKVAVSFTHVIK-SAEPVFAVVFSS-FLGDIYPLKVW----LSILPIVLGCSLAAV 250 (419)
Q Consensus 177 ~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~li~-~~~Pi~~~lls~-~l~er~~~~~~----~~v~l~~~Gv~l~~~ 250 (419)
+.+..-+..|++..+++..++.+++++.++.+.=+. ..+-+.+.++++ +++|--+..++ +|++++++|+++.+.
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 667777888999999999999999999999887664 678888999999 99998777766 488999999998876
Q ss_pred ccccc--------cHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhh
Q 014782 251 TEVSF--------NFGGLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHN 322 (419)
Q Consensus 251 ~~~~~--------~~~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~ 322 (419)
.|.+. ...|++..+++.+.|..|.+..|-. +.++.....=+++.-.+-.+.+.... .....
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~-----~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~~~----- 191 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF-----HVSGWSAFLPQAIGMLIGAFIFNLFS-KKPFF----- 191 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc-----CCChhHhHHHHHHHHHHHHHHHhhcc-ccccc-----
Confidence 54321 2469999999999999999997754 36777777666544433333332222 11111
Q ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccch----hhhhHHHHH
Q 014782 323 AIAAVGKPSTFYFWVLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPL----NALGSAIAI 398 (419)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~----~~iG~~lil 398 (419)
.. ..+.-++.|++-...|+..+...++.+..+.=.+.-+..+++.+.|+++++|+=+.. .++|.++++
T Consensus 192 -----~k---~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv 263 (269)
T PF06800_consen 192 -----EK---KSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIV 263 (269)
T ss_pred -----cc---chHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHH
Confidence 11 133445566666677777778888999988889999999999999999999987654 567888887
Q ss_pred HHHHH
Q 014782 399 FGTFL 403 (419)
Q Consensus 399 ~Gv~l 403 (419)
.|..+
T Consensus 264 ~G~il 268 (269)
T PF06800_consen 264 IGAIL 268 (269)
T ss_pred Hhhhc
Confidence 77643
No 41
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.00 E-value=2.3e-09 Score=86.56 Aligned_cols=135 Identities=21% Similarity=0.208 Sum_probs=107.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHH
Q 014782 259 GLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVL 338 (419)
Q Consensus 259 G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (419)
..+++++|++.+++..+..|--+++ +||......-++...+++..........+.... .+.. -|..++
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~---vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~-------~~~k--~~lfli 71 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEG---VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGE-------IGPK--SWLFLI 71 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc---cCccHHHHHHHHHHHHHHHHHHHhcCceecccc-------cCcc--eehhhh
Confidence 4689999999999999999987654 787777666666666666655444332222211 2333 377888
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHH
Q 014782 339 LSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYS 405 (419)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~ 405 (419)
++|+.+....++.|++++.-.+..+....-+.++++++++++++||+++..+++|++++.+|..+.+
T Consensus 72 lSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 72 LSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 8998888888899999999999999999999999999999999999999999999999999987654
No 42
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.76 E-value=4.6e-07 Score=87.18 Aligned_cols=139 Identities=16% Similarity=0.115 Sum_probs=106.2
Q ss_pred ccHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhh-hhhhhhhhhhcCCchHH
Q 014782 255 FNFGGLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQW-IQGYHNAIAAVGKPSTF 333 (419)
Q Consensus 255 ~~~~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 333 (419)
....|+++.++++++|+...+..|.. . ++++.++.++...++.+++.+.......... .... .+.. .
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~---~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~------~~~~--~ 72 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y---YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLI------QTPQ--K 72 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-c---CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH------cCHH--H
Confidence 34579999999999999999999765 2 3899999999999998877766443221111 0000 0111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHH
Q 014782 334 YFWVLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYS 405 (419)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~ 405 (419)
+...+..++.....+.+.+.+++++++...++..++.|+++.++++++++|+++..+++|+++.+.|+.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 73 IFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 223334444455566788899999999999999999999999999999999999999999999999998764
No 43
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.69 E-value=6.1e-07 Score=85.67 Aligned_cols=132 Identities=16% Similarity=0.204 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhc-ChhhhhhhhhhhhhcCCchHHHHHHH
Q 014782 260 LWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVE-GSQWIQGYHNAIAAVGKPSTFYFWVL 338 (419)
Q Consensus 260 ~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (419)
.++.+++++++|.+.++.||..++ .++ ...+....+.+++.|...... ...+.. .... .+..++
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~---~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~--~~~~~~ 67 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK---EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSR--------LPAT--FWLLLA 67 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc---hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCC--------cchh--hHHHHH
Confidence 578899999999999999988553 233 335555566667767654321 111111 0111 244555
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHh
Q 014782 339 LSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQ 406 (419)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~ 406 (419)
..++....+..+.+.++++.++...+++.+..|+++.+++++++||+++..+++|.++++.|+.+...
T Consensus 68 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 68 ISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 66666667777888899999999999999999999999999999999999999999999999987654
No 44
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.68 E-value=9.9e-07 Score=82.95 Aligned_cols=128 Identities=16% Similarity=0.067 Sum_probs=95.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHH-HHH
Q 014782 114 TLKLALVFGFWYFQNIVFNIYNKKALNVFP-FPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALF-HTI 191 (419)
Q Consensus 114 ~l~~~~~~~~w~~~~~~~~~~~K~~l~~~~-~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~ 191 (419)
.....+..+.| ....++.|...++.+ .+.....+++.++.+++.+........ ...+.+.+...+..+++ ..+
T Consensus 130 ~~~~l~a~~~~----a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 204 (260)
T TIGR00950 130 LLLGLGSGISF----ALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPN-PQALSLQWGALLYLGLIGTAL 204 (260)
T ss_pred HHHHHHHHHHH----HHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHHHHHHHH
Confidence 33344444444 777888999887655 234555577888887776654432222 23345566556666666 467
Q ss_pred HHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhh
Q 014782 192 GHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCS 246 (419)
Q Consensus 192 ~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~ 246 (419)
+..+++.++++.+++.++++..++|++++++++ +++|+++..+++|+.+++.|+.
T Consensus 205 ~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 205 AYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 888999999999999999999999999999999 9999999999999999999973
No 45
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.67 E-value=1e-06 Score=82.84 Aligned_cols=139 Identities=16% Similarity=0.217 Sum_probs=106.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhh-hhhhhhhhhhcCCchHHHHH
Q 014782 258 GGLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQW-IQGYHNAIAAVGKPSTFYFW 336 (419)
Q Consensus 258 ~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 336 (419)
.|.++.++++++|+...+..|.. . ++++.++.++-.+++.+++.+.......... ..... ...... .+..
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~---~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~ 72 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-K---PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLK----RIQKRP-LILS 72 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-c---cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHh----Ccccch-HHHH
Confidence 48899999999999999999974 3 2899999999999988777665433221110 01010 011111 2445
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHH
Q 014782 337 VLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYS 405 (419)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~ 405 (419)
+...+++....+.+.+.+++++++.++++..++.|+++.++++++++|+++..+++|.++.+.|+.+..
T Consensus 73 ~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 73 LLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 556666666667788889999999999999999999999999999999999999999999999988654
No 46
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.46 E-value=6.3e-06 Score=81.16 Aligned_cols=135 Identities=15% Similarity=0.231 Sum_probs=105.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhh-hh-hhhhhhhhcCCchHHHHH
Q 014782 259 GLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQW-IQ-GYHNAIAAVGKPSTFYFW 336 (419)
Q Consensus 259 G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~ 336 (419)
-.+..+..-++|+.+.++.|..++ .++++..+.+|=..++.++++++....+.... .. .+. .+..
T Consensus 14 ~~~~~~~~q~~~~~~~~~~k~a~~--~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~-----------~~~~ 80 (358)
T PLN00411 14 FLTAMLATETSVVGISTLFKVATS--KGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVS-----------ILSK 80 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--CCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHH-----------HHHH
Confidence 356667778899999999999875 47899999999888988888888665432111 11 111 2444
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHh------hcccccchhhhhHHHHHHHHHHHHh
Q 014782 337 VLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILV------FRNPVRPLNALGSAIAIFGTFLYSQ 406 (419)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~------fge~ls~~~~iG~~lil~Gv~l~~~ 406 (419)
+.+.|+++..++.+.+..++++++..+++..++.|+++.++++++ ++|+++..+++|.++.++|+.+...
T Consensus 81 l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 81 IGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 555566555556677889999999999999999999999999999 6999999999999999999987664
No 47
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.40 E-value=1.1e-05 Score=77.28 Aligned_cols=62 Identities=23% Similarity=0.350 Sum_probs=57.5
Q ss_pred HHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheee
Q 014782 188 FHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAA 249 (419)
Q Consensus 188 ~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~ 249 (419)
++.++..+.+.|+.+.|.+..+-+.+..-++.++++. ++|||++++.+.|++++++|..++.
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 4567788999999999999999999999999999999 9999999999999999999998654
No 48
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.37 E-value=2e-05 Score=75.75 Aligned_cols=121 Identities=15% Similarity=0.170 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHH-HHHHHHHhhhHhcccc
Q 014782 126 FQNIVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALF-HTIGHISACVSFSKVA 204 (419)
Q Consensus 126 ~~~~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~al~~~~ 204 (419)
++.....+..|...++.+ |..... ...++.+++.+....... ....+...+...+..+++ ..++..++++++++++
T Consensus 158 ~~~a~~~v~~r~~~~~~~-~~~~~~-~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~ 234 (293)
T PRK10532 158 ACWAIYILSGQRAGAEHG-PATVAI-GSLIAALIFVPIGALQAG-EALWHWSILPLGLAVAILSTALPYSLEMIALTRLP 234 (293)
T ss_pred HHHHHHHHHHHHHhccCC-chHHHH-HHHHHHHHHHHHHHHccC-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334677778888776655 655544 445555544444332211 112234444444455655 4567789999999999
Q ss_pred hhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheee
Q 014782 205 VSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAA 249 (419)
Q Consensus 205 ~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~ 249 (419)
++.++++..++|++..++++ +++|+++..+++|.+++++|++...
T Consensus 235 a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 235 TRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999998764
No 49
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.36 E-value=1.1e-05 Score=77.66 Aligned_cols=121 Identities=17% Similarity=0.167 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhHhcccch
Q 014782 126 FQNIVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFHTIGHISACVSFSKVAV 205 (419)
Q Consensus 126 ~~~~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~ 205 (419)
+++....+++|..-++.+ |..... ..+.+.+.+............+.+.+...+..++...++..++++++++.++
T Consensus 166 ~~~A~~~v~~k~~~~~~~-~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a 241 (295)
T PRK11689 166 FIWAAYCNVTRKYARGKN-GITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNM 241 (295)
T ss_pred HHHHHHHHHHhhccCCCC-chhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 334777788888765544 544321 2222222222222111112344555656666666566788999999999999
Q ss_pred hHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeec
Q 014782 206 SFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAV 250 (419)
Q Consensus 206 ~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~ 250 (419)
+.++++...+|++..++++ +++|+++..+++|++++++|+.+...
T Consensus 242 ~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 242 TLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 9999999999999999999 99999999999999999999986643
No 50
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.32 E-value=2.1e-05 Score=75.48 Aligned_cols=120 Identities=18% Similarity=0.202 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCcCCC-CCCCHHHHHHHHHHHHH-HHHHHHHhhhHhcccchh
Q 014782 129 IVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKLQPC-PKISKPFIIALLGPALF-HTIGHISACVSFSKVAVS 206 (419)
Q Consensus 129 ~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~-~~~~~~~~~~al~~~~~~ 206 (419)
....+..|..-+ +++...+.+++.++...+.++........ ...+.+.+..++..+++ ..++..++++++++.+++
T Consensus 163 a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~ 240 (292)
T PRK11272 163 AFGSVWSSRLPL--PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPA 240 (292)
T ss_pred HHHHHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Confidence 555666777543 23555667888888776655543221111 11244556666666666 456788999999999999
Q ss_pred HHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeec
Q 014782 207 FTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAV 250 (419)
Q Consensus 207 ~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~ 250 (419)
.++++..++|++.+++++ ++||+++..+++|.+++++|+.+...
T Consensus 241 ~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 241 LATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999999999999987654
No 51
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.31 E-value=2.8e-05 Score=64.93 Aligned_cols=123 Identities=19% Similarity=0.077 Sum_probs=81.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHH
Q 014782 258 GGLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWV 337 (419)
Q Consensus 258 ~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (419)
.|.++.+.+.++.+...++.|+-+++....+ .... . . .... ...+ + +..+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~---~~~~-~-~----~~~~-~~~~----------------p----~~~i 51 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLS---HAWD-F-I----AALL-AFGL----------------A----LRAV 51 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCcc---chhH-H-H----HHHH-HHhc----------------c----HHHH
Confidence 3789999999999999999998765422222 1100 0 0 0000 0000 0 0011
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHH--hhcccccchhhhhHHHHHHHHHHHHhhhcc
Q 014782 338 LLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASIL--VFRNPVRPLNALGSAIAIFGTFLYSQATAK 410 (419)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l--~fge~ls~~~~iG~~lil~Gv~l~~~~~~~ 410 (419)
...-++..+..+++..++++.+...+..+..+..+...+.++. +|||++++.+++|++++++|+++.++.+++
T Consensus 52 ~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 52 LLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 1111222233456677899999999988888888888778875 899999999999999999999998865443
No 52
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.30 E-value=5.2e-06 Score=67.52 Aligned_cols=63 Identities=11% Similarity=0.135 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheee
Q 014782 187 LFHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAA 249 (419)
Q Consensus 187 l~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~ 249 (419)
+++.....+...+++++|.+.+..+.++.+++++++++ ++|||+++++++|+.++++|++++.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 44566888999999999999999999999999999999 9999999999999999999998764
No 53
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.24 E-value=0.00089 Score=65.06 Aligned_cols=285 Identities=11% Similarity=0.007 Sum_probs=162.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH-HHHHHHHHHH----HHHHhCc-CCCCCCCHHHHHHHHHHHHH
Q 014782 115 LKLALVFGFWYFQNIVFNIYNKKALNVFPFPWLLASF-QLFAGSVWML----VLWSLKL-QPCPKISKPFIIALLGPALF 188 (419)
Q Consensus 115 l~~~~~~~~w~~~~~~~~~~~K~~l~~~~~P~~l~~~-r~~~~~~~l~----~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 188 (419)
...++++++-.+++.+...-.|. .++++.- ..+. ..++..+++. .+..... ......+.+.+...+..|++
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE--~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~ 82 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKKWSWE--TMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGAL 82 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCCCchh--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHH
Confidence 34555666666666777777777 5544311 1111 1112222221 1110000 00112345667777888999
Q ss_pred HHHHHHHhhhHhcccchhHHHHH-HHhHHHHHHHHHH-HhCCcc---C----hhHHHHHHHHHhhhheeec----ccc--
Q 014782 189 HTIGHISACVSFSKVAVSFTHVI-KSAEPVFAVVFSS-FLGDIY---P----LKVWLSILPIVLGCSLAAV----TEV-- 253 (419)
Q Consensus 189 ~~~~~~~~~~al~~~~~~~~~li-~~~~Pi~~~lls~-~l~er~---~----~~~~~~v~l~~~Gv~l~~~----~~~-- 253 (419)
..+++..+..+.+++.++...-+ ..++-++..++.. +++|-. + ..-.+|++++++|+++... .|.
T Consensus 83 W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~~ 162 (345)
T PRK13499 83 WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERKM 162 (345)
T ss_pred HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 99999999999999999988766 5588888999988 877533 2 3456899999999998866 332
Q ss_pred ------cc-cHHhHHHHHHHHHHHHHHHHHHHhhc--CC---CCCCChhhHHHHHHH---HHHHHHHHH-HHHh--cChh
Q 014782 254 ------SF-NFGGLWGAMISNIGFVLRNIYSKKSL--GD---FKEVNGLNLYGWITI---ISLFYLFPV-AIFV--EGSQ 315 (419)
Q Consensus 254 ------~~-~~~G~~~~l~s~l~~a~~~v~~k~~~--~~---~~~~~~~~~~~~~~~---~~~i~l~~~-~~~~--~~~~ 315 (419)
+. ...|+++++++.+.+++|......-. .+ +.+.++.....-+.. .+.++.-.. .... ....
T Consensus 163 ~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~ 242 (345)
T PRK13499 163 GIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKD 242 (345)
T ss_pred ccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 12 25799999999999999994322211 10 123455443333332 333322211 1110 1111
Q ss_pred hhhhhhhhhhhcCC-c--hHHHHHHHHHHHHHHHHHHHHHHHhhccChhH----HHHHHHHHHHHHHHHHHHhhccccc-
Q 014782 316 WIQGYHNAIAAVGK-P--STFYFWVLLSGIFYHLYNQSSYQALDDISPLT----FSVGNTMKRVVVIVASILVFRNPVR- 387 (419)
Q Consensus 316 ~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~~----~sv~~~l~~v~~~il~~l~fge~ls- 387 (419)
+.. +.+ .... . ..-.....+.|++-+..+.......++.+... ..+.+.+..+++.+.|+ +++|.=+
T Consensus 243 ~~~-~~~---~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a 317 (345)
T PRK13499 243 LSL-KAD---FSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGA 317 (345)
T ss_pred ccc-chh---ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCC
Confidence 110 000 0010 0 00133445566665555555555555553332 22444677789999999 5998766
Q ss_pred -----chhhhhHHHHHHHHHHHHhh
Q 014782 388 -----PLNALGSAIAIFGTFLYSQA 407 (419)
Q Consensus 388 -----~~~~iG~~lil~Gv~l~~~~ 407 (419)
...++|.++++.|..+....
T Consensus 318 ~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 318 SRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhc
Confidence 56789999999998876543
No 54
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.09 E-value=0.00016 Score=67.28 Aligned_cols=140 Identities=14% Similarity=0.188 Sum_probs=105.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHH
Q 014782 257 FGGLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFW 336 (419)
Q Consensus 257 ~~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (419)
..|+++++.+-+.|+.--.+.|-+ ++.++.++..+-.+.+.+++.............. + ....+. .+..
T Consensus 6 ~~Gil~~l~Ay~lwG~lp~y~kll----~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~--~----~~~~p~-~~~~ 74 (293)
T COG2962 6 RKGILLALLAYLLWGLLPLYFKLL----EPLPATEILAHRVIWSFPFMLALLFLLRQWRELK--Q----LLKQPK-TLLM 74 (293)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH----ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH--H----HHhCcH-HHHH
Confidence 469999999999999999998877 2478999999998888888776644443222111 1 112221 3555
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhh
Q 014782 337 VLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQA 407 (419)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~ 407 (419)
..+.++.-..-.....++...-....+|...+++|.+.+++|.++++|+++..|++..++..+|+..-...
T Consensus 75 ~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 75 LALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 55555443332244557888889999999999999999999999999999999999999999998766543
No 55
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.08 E-value=0.00018 Score=69.28 Aligned_cols=125 Identities=17% Similarity=0.127 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHHHH-HhCcCC-----CCCCCHHHHHHHHHHHHHH-HHHHHHh
Q 014782 126 FQNIVFNIYNKKALNVFPFP--WLLASFQLFAGSVWMLVLW-SLKLQP-----CPKISKPFIIALLGPALFH-TIGHISA 196 (419)
Q Consensus 126 ~~~~~~~~~~K~~l~~~~~P--~~l~~~r~~~~~~~l~~~~-~~~~~~-----~~~~~~~~~~~~~~~~l~~-~~~~~~~ 196 (419)
.++....++.|...++.+.+ .....+..+.+.+.+.... ...... ....+.+.+..++..+++. .++..++
T Consensus 153 l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~ 232 (299)
T PRK11453 153 FSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIW 232 (299)
T ss_pred HHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33477777888876554433 3334445555444332221 111111 1123455666666666664 4677889
Q ss_pred hhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeec
Q 014782 197 CVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAV 250 (419)
Q Consensus 197 ~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~ 250 (419)
+.++++.++..+..+..++|++..++++ +++|+++..+++|.+++++|+.+...
T Consensus 233 ~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~ 287 (299)
T PRK11453 233 GTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVF 287 (299)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999 99999999999999999999987643
No 56
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.05 E-value=6.3e-05 Score=72.11 Aligned_cols=132 Identities=16% Similarity=0.136 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHH
Q 014782 259 GLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVL 338 (419)
Q Consensus 259 G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (419)
|++++++++++|+...+..|+.. +.++.+... ..++.+++.........+.. + ... .+...+
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~----g~~~~~~~~--~~~g~l~~~~~~~~~~~~~~-~---------~~~--~~~~g~ 63 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG----GGPYSQTLG--TTFGALILSIAIAIFVLPEF-W---------ALS--IFLVGL 63 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC----CCHHHHHHH--HHHHHHHHHHHHHHHhCCcc-c---------ccH--HHHHHH
Confidence 68899999999999999999873 355555542 33344444333233221111 1 011 455566
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHHH-HHHHHHHHHHHHhhcccccchh----hhhHHHHHHHHHHHHhhh
Q 014782 339 LSGIFYHLYNQSSYQALDDISPLTFSVGNT-MKRVVVIVASILVFRNPVRPLN----ALGSAIAIFGTFLYSQAT 408 (419)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~-l~~v~~~il~~l~fge~ls~~~----~iG~~lil~Gv~l~~~~~ 408 (419)
++|+.-...|+..+.++++.+....-...+ +.++++.+++.++|||+.+..+ ++|.++++.|+++....+
T Consensus 64 l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 64 LSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 777776677888889999999888876666 8888999999999999999999 999999999998876554
No 57
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.04 E-value=0.00017 Score=71.02 Aligned_cols=135 Identities=12% Similarity=-0.036 Sum_probs=97.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHHHHHHHHHHHhcC--hhhhhhhhhhhhhcCCchHH
Q 014782 257 FGGLWGAMISNIGFVLRNIYSKKSLGDFKEVN-GLNLYGWITIISLFYLFPVAIFVEG--SQWIQGYHNAIAAVGKPSTF 333 (419)
Q Consensus 257 ~~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~-~~~~~~~~~~~~~i~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 333 (419)
+.-..+.+.--.+...++++.|..++. .+ |+.+..++.+++.+++......... +.... .. . .
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~---~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~---------~-~ 113 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALNM---LPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKS-LK---------L-F 113 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC-HH---------H-H
Confidence 334444444455556667888888764 67 9999999998887765544322110 11110 00 0 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHH
Q 014782 334 YFWVLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYS 405 (419)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~ 405 (419)
+..++..|+++...+...+.+++++++..+++...+.|++++++++++++|+++..+++|.+++++|+.+..
T Consensus 114 ~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 114 LKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 455666666666555556678899999999999999999999999999999999999999999999998765
No 58
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.03 E-value=0.00033 Score=60.11 Aligned_cols=128 Identities=16% Similarity=0.121 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHHHHHh-CcCCC-------CC--C--CHHHHHHH
Q 014782 121 FGFWYFQNIVFNIYNKKALNV------FPFPWLLASFQLFAGSVWMLVLWSL-KLQPC-------PK--I--SKPFIIAL 182 (419)
Q Consensus 121 ~~~w~~~~~~~~~~~K~~l~~------~~~P~~l~~~r~~~~~~~l~~~~~~-~~~~~-------~~--~--~~~~~~~~ 182 (419)
++...++.....++.|..+++ -..++.+.......+.+.+.+.+.. ...+. .+ . +.+.+..+
T Consensus 5 ~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (153)
T PF03151_consen 5 ALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLL 84 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHH
Confidence 344445566777788888776 2346777767666666666554332 11110 00 0 22445566
Q ss_pred HHHHHHHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhhee
Q 014782 183 LGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLA 248 (419)
Q Consensus 183 ~~~~l~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~ 248 (419)
+..+++....+...+..++++++-+.+++....-+.+.++++ +++|+++..+++|++++++|+++-
T Consensus 85 ~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Y 151 (153)
T PF03151_consen 85 ILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLY 151 (153)
T ss_pred HHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhee
Confidence 667777888899999999999999999999999999999999 999999999999999999999864
No 59
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.94 E-value=0.0003 Score=67.76 Aligned_cols=124 Identities=15% Similarity=-0.013 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHH
Q 014782 269 GFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLSGIFYHLYN 348 (419)
Q Consensus 269 ~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (419)
+....+++.|..+++ -..|..+..+....+.+.+.+........... .... -+..++..|++.....
T Consensus 13 ~~~~~~~~NK~~l~~--~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~--~~~~~~~~g~~~~~~~ 79 (302)
T TIGR00817 13 LNVYFNIYNKKLLNV--FPYPYFKTLISLAVGSLYCLLSWSSGLPKRLK---------ISSA--LLKLLLPVAIVHTIGH 79 (302)
T ss_pred HHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCC---------CCHH--HHHHHHHHHHHHHHHH
Confidence 334455677777653 24577788887777766554441111111100 0111 2445555666655566
Q ss_pred HHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHH
Q 014782 349 QSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYS 405 (419)
Q Consensus 349 ~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~ 405 (419)
...+..++++++..+++...+.|+++.++++++++|+++..+++|.+++++|+.+..
T Consensus 80 ~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~ 136 (302)
T TIGR00817 80 VTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS 136 (302)
T ss_pred HHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc
Confidence 778889999999999999999999999999999999999999999999999997653
No 60
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=97.91 E-value=0.00039 Score=56.70 Aligned_cols=72 Identities=17% Similarity=0.301 Sum_probs=59.1
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhh
Q 014782 336 WVLLSGIFYH-LYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQAT 408 (419)
Q Consensus 336 ~~~~~~~~~~-~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~ 408 (419)
..+..|++.. ..+...+.++++.++ ..+....+.|+++.++++++|+|+++..+++|.++++.|+.+.....
T Consensus 36 ~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~ 108 (113)
T PF13536_consen 36 WLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSD 108 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 4444444444 455666778888885 77788889999999999999999999999999999999999887654
No 61
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.00012 Score=68.91 Aligned_cols=207 Identities=17% Similarity=0.211 Sum_probs=119.6
Q ss_pred HHHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecccc-c--c-c-----
Q 014782 187 LFHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEV-S--F-N----- 256 (419)
Q Consensus 187 l~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~-~--~-~----- 256 (419)
+.+..+....+.|+.+.|.+..+-+.+++.+..++++. +++||+++...+|+.++++|-.++..... + . +
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~ 151 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVW 151 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHH
Confidence 34667889999999999999999999999999999999 99999999999999999999886643211 0 0 0
Q ss_pred ----HHhHH-HHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHH--------HH--HHhcChhhhhhhh
Q 014782 257 ----FGGLW-GAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFP--------VA--IFVEGSQWIQGYH 321 (419)
Q Consensus 257 ----~~G~~-~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~--------~~--~~~~~~~~~~~~~ 321 (419)
-.+.+ +..+-.+...+-..+.|.. ....+++.|..+.+.+-.+- .+ ..+++....
T Consensus 152 ~~~~~~~Fliy~~~iil~~~il~~~~~p~------~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql---- 221 (335)
T KOG2922|consen 152 ELATEPGFLVYVIIIILIVLILIFFYAPR------YGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQL---- 221 (335)
T ss_pred HHhcCccHHHHHHHHHHHHHHHheeeccc------ccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCccc----
Confidence 01211 1111111111111122211 12223444444433321100 00 111111100
Q ss_pred hhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHH-HHHHHHHHHHHHHHHHhhcccc--c----chhhhhH
Q 014782 322 NAIAAVGKPSTFYFWVLLSGIFYHLYNQSSYQALDDISPLTFS-VGNTMKRVVVIVASILVFRNPV--R----PLNALGS 394 (419)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~~~s-v~~~l~~v~~~il~~l~fge~l--s----~~~~iG~ 394 (419)
..+. .|.+++....+..........+++..++..++ ++..+-..++++.|.++|.|-- + ...+.|.
T Consensus 222 -----~~~~--ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf 294 (335)
T KOG2922|consen 222 -----FYPL--TWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGF 294 (335)
T ss_pred -----ccHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhH
Confidence 0111 23333333333332223345677777665555 5555567788888999998643 2 2367888
Q ss_pred HHHHHHHHHHHhhhcc
Q 014782 395 AIAIFGTFLYSQATAK 410 (419)
Q Consensus 395 ~lil~Gv~l~~~~~~~ 410 (419)
..++.|+++....|..
T Consensus 295 ~ti~~G~flL~~~kd~ 310 (335)
T KOG2922|consen 295 VTIFLGIFLLHRTKDM 310 (335)
T ss_pred HHhhheeeEeeeeccc
Confidence 8999999888665544
No 62
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.80 E-value=8.4e-06 Score=73.56 Aligned_cols=217 Identities=15% Similarity=0.191 Sum_probs=153.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhHhcccchhHHHHHH-HhHHHHHHHHHH-HhCCccChhHH----HHHHHHHhh
Q 014782 171 CPKISKPFIIALLGPALFHTIGHISACVSFSKVAVSFTHVIK-SAEPVFAVVFSS-FLGDIYPLKVW----LSILPIVLG 244 (419)
Q Consensus 171 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~li~-~~~Pi~~~lls~-~l~er~~~~~~----~~v~l~~~G 244 (419)
.+..+.+.+.--+..|++..+++..++-|.+++.++.+.-+. .++-+-+.++++ .++|--+..+. +++++.++|
T Consensus 51 ~p~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG 130 (288)
T COG4975 51 SPELTLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIG 130 (288)
T ss_pred cCccchhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHh
Confidence 344566667677777888999999999999999999887664 477788889999 99998777665 688899999
Q ss_pred hheeeccccc--------ccHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhh
Q 014782 245 CSLAAVTEVS--------FNFGGLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQW 316 (419)
Q Consensus 245 v~l~~~~~~~--------~~~~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~ 316 (419)
+.+-+..|.+ +--.|+...+.|.+.|-.|.++.+.. ++|.++...-++....+..+.+...-+....
T Consensus 131 ~~lTs~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f-----~v~g~saiLPqAiGMv~~ali~~~~~~~~~~ 205 (288)
T COG4975 131 IYLTSKQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQLF-----DVDGLSAILPQAIGMVIGALILGFFKMEKRF 205 (288)
T ss_pred heEeeeeccccccccChHhhhhheeeeeeeccceeeeEeeeccc-----cccchhhhhHHHHHHHHHHHHHhhcccccch
Confidence 9998876531 12469999999999999999988766 2566665555554333333333222221111
Q ss_pred hhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccch----hhh
Q 014782 317 IQGYHNAIAAVGKPSTFYFWVLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPL----NAL 392 (419)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~----~~i 392 (419)
.. ..+.-+..|+.-...|+..+.+.++.+-.+.=.+.-+.-+++.+-|+++++|+=|.. .++
T Consensus 206 ~K--------------~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~i 271 (288)
T COG4975 206 NK--------------YTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVII 271 (288)
T ss_pred HH--------------HHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhh
Confidence 11 233444566666667777777777777666556666778899999999999998765 467
Q ss_pred hHHHHHHHHHHHHh
Q 014782 393 GSAIAIFGTFLYSQ 406 (419)
Q Consensus 393 G~~lil~Gv~l~~~ 406 (419)
|.++++.|..+...
T Consensus 272 Giilivvgai~lg~ 285 (288)
T COG4975 272 GIILIVVGAILLGI 285 (288)
T ss_pred hHHHHHHHhhhhhe
Confidence 88888887766543
No 63
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.77 E-value=0.0013 Score=62.25 Aligned_cols=119 Identities=22% Similarity=0.275 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHH-HHHHHhhhHhcccch
Q 014782 128 NIVFNIYNKKALNVFPFPWLLAS-FQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFHT-IGHISACVSFSKVAV 205 (419)
Q Consensus 128 ~~~~~~~~K~~l~~~~~P~~l~~-~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~al~~~~~ 205 (419)
.....+.+|... ..+ +..... +++............ .... .....+.+......+++.. .+..+.+.+++..++
T Consensus 166 ~a~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~ 241 (292)
T COG0697 166 WALYTALVKRLS-RLG-PVTLALLLQLLLALLLLLLFFL-SGFG-APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGA 241 (292)
T ss_pred HHHHHHHHHHhc-CCC-hHHHHHHHHHHHHHHHHHHHHh-cccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 356677778776 333 444444 444422222222221 1111 2345566777777777766 588999999999999
Q ss_pred hHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeec
Q 014782 206 SFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAV 250 (419)
Q Consensus 206 ~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~ 250 (419)
+..+.+..+.|++.+++++ +++|+++..+++|+++++.|+.+...
T Consensus 242 ~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~ 287 (292)
T COG0697 242 SLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999 99999999999999999999987654
No 64
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.73 E-value=0.0003 Score=57.14 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=52.0
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHh
Q 014782 348 NQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQ 406 (419)
Q Consensus 348 ~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~ 406 (419)
.+++..++++.+...+.....+.++.+.++|+++|||+++..+++|.++++.|+.+...
T Consensus 51 ~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 51 MVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34556778899998888878899999999999999999999999999999999987643
No 65
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.72 E-value=0.00074 Score=65.15 Aligned_cols=130 Identities=15% Similarity=0.070 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHH
Q 014782 269 GFVLRNIYSKKSLGDFKEV-NGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVLLSGIFYHLY 347 (419)
Q Consensus 269 ~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (419)
++..+.++++++++++... .+..+.+.+.....+...+........... .. -+.-....+++..+.
T Consensus 11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~-----------~~--~~~~~~~~~~~~~~~ 77 (303)
T PF08449_consen 11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPKSR-----------KI--PLKKYAILSFLFFLA 77 (303)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccCCC-----------cC--hHHHHHHHHHHHHHH
Confidence 3444668888887765444 477777788777776665553332201100 00 122333344555566
Q ss_pred HHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhccc
Q 014782 348 NQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATAKK 411 (419)
Q Consensus 348 ~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~~~ 411 (419)
..+.+.++++++-.+..+.-..+++.+++++++++|++.+..++++.+++.+|+.+....+.++
T Consensus 78 ~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~ 141 (303)
T PF08449_consen 78 SVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSS 141 (303)
T ss_pred HHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccc
Confidence 6677788999999999999999999999999999999999999999999999999988765443
No 66
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.60 E-value=0.00041 Score=57.91 Aligned_cols=69 Identities=14% Similarity=0.112 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH---HhCCccChhHHHHHHHHHhhhheeecc
Q 014782 183 LGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS---FLGDIYPLKVWLSILPIVLGCSLAAVT 251 (419)
Q Consensus 183 ~~~~l~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~---~l~er~~~~~~~~v~l~~~Gv~l~~~~ 251 (419)
...-+++.++..+.+.+++..+++.+.-+.+..++++.+.++ ++||++++.+++|++++++|+.++..+
T Consensus 52 ~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 52 LLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 444455777889999999999999999999999888887776 589999999999999999999987643
No 67
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.44 E-value=0.0015 Score=53.66 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhhhHhcccchhHHHHHH-HhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeec
Q 014782 183 LGPALFHTIGHISACVSFSKVAVSFTHVIK-SAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAV 250 (419)
Q Consensus 183 ~~~~l~~~~~~~~~~~al~~~~~~~~~li~-~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~ 250 (419)
+...+++..+.++...+++++|.+.+..+- ...-+.+.++++ ++||++++.+++++.++++|+.++..
T Consensus 34 ~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 34 ILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 445666778888999999999999988884 689999999999 99999999999999999999987754
No 68
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.39 E-value=0.0041 Score=56.76 Aligned_cols=119 Identities=15% Similarity=0.222 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHH-HHHHHHhhhHhcccc
Q 014782 126 FQNIVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFH-TIGHISACVSFSKVA 204 (419)
Q Consensus 126 ~~~~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~al~~~~ 204 (419)
.++..+.+..|.+-..-+-+-. +..-+.+++++.+++....... .-.++.....-+..+++. .+-..+...+++..|
T Consensus 158 ~~Wa~YIv~G~r~g~~~~g~~g-~a~gm~vAaviv~Pig~~~ag~-~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp 235 (292)
T COG5006 158 ACWALYIVLGQRAGRAEHGTAG-VAVGMLVAALIVLPIGAAQAGP-ALFSPSLLPLALGVAVLSSALPYSLEMIALRRLP 235 (292)
T ss_pred HHHHHHHHHcchhcccCCCchH-HHHHHHHHHHHHhhhhhhhcch-hhcChHHHHHHHHHHHHhcccchHHHHHHHhhCC
Confidence 3337778787777644332333 3455777777666665322111 112333343444445553 345678899999999
Q ss_pred hhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhh
Q 014782 205 VSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCS 246 (419)
Q Consensus 205 ~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~ 246 (419)
...+.++.+++|.+.++.++ +++|+++..||+++..++.+.+
T Consensus 236 ~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 236 ARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999 9999999999999999888776
No 69
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.37 E-value=0.0048 Score=59.95 Aligned_cols=71 Identities=17% Similarity=0.128 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhh
Q 014782 337 VLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQA 407 (419)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~ 407 (419)
-++.+++=...|++...+.++++...+.++.....++++++++++++++.++.+++|++++++|+.+....
T Consensus 82 y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 82 YFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence 33346777788999999999999999999999999999999999999999999999999999999877654
No 70
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.33 E-value=0.0044 Score=60.25 Aligned_cols=138 Identities=12% Similarity=0.122 Sum_probs=90.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHH--HHHHHH--HHhcChhhhhhhhhhhhhcCCchH
Q 014782 257 FGGLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLF--YLFPVA--IFVEGSQWIQGYHNAIAAVGKPST 332 (419)
Q Consensus 257 ~~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i--~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 332 (419)
..|+++++++++|++...+-+||. ++ -+++.. |. ..+.+ ++.|.. .+.+ +...+ .....+..
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~~-k~----w~wE~~-W~-v~gi~~wl~~~~~~g~~~~-~~f~~----~~~~~~~~-- 71 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKKV-KK----WSWETM-WS-VGGIFSWLILPWLIAALLL-PDFWA----YYSSFSGS-- 71 (345)
T ss_pred HHHHHHHHHHHHHhhccccccccc-CC----CchhHH-HH-HHHHHHHHHHHHHHHHHHh-hhHHH----HHHhcCHH--
Confidence 579999999999999999999884 32 444444 33 22221 122211 1111 22222 12222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChhH-HHHHHHHHHHHHHHHHHHhhcccc---c----chhhhhHHHHHHHHHHH
Q 014782 333 FYFWVLLSGIFYHLYNQSSYQALDDISPLT-FSVGNTMKRVVVIVASILVFRNPV---R----PLNALGSAIAIFGTFLY 404 (419)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~l~~~sa~~-~sv~~~l~~v~~~il~~l~fge~l---s----~~~~iG~~lil~Gv~l~ 404 (419)
.+...+++|++-...|...+..+++.+-.. ..+..-++.+.+.+++.+++||-. + ...++|.++++.|+.+.
T Consensus 72 ~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~ 151 (345)
T PRK13499 72 TLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIV 151 (345)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 467777788777777888888888887644 447777888999999999999643 2 34788999999999998
Q ss_pred Hhhh
Q 014782 405 SQAT 408 (419)
Q Consensus 405 ~~~~ 408 (419)
.++.
T Consensus 152 s~Ag 155 (345)
T PRK13499 152 GRAG 155 (345)
T ss_pred HHhh
Confidence 8743
No 71
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.28 E-value=0.0028 Score=51.25 Aligned_cols=68 Identities=13% Similarity=0.204 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHhhhHhcccchhHHHHHH-HhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeec
Q 014782 183 LGPALFHTIGHISACVSFSKVAVSFTHVIK-SAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAV 250 (419)
Q Consensus 183 ~~~~l~~~~~~~~~~~al~~~~~~~~~li~-~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~ 250 (419)
....+++.++..+...+++++|.+.+..+- ...-+.+.+.++ ++||++++.+++|+.++++|++++..
T Consensus 34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 344555677778888999999999988884 478889999999 99999999999999999999997754
No 72
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.27 E-value=0.0024 Score=52.44 Aligned_cols=58 Identities=16% Similarity=0.282 Sum_probs=47.8
Q ss_pred HHHhhccCh-hHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhc
Q 014782 352 YQALDDISP-LTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATA 409 (419)
Q Consensus 352 ~~~l~~~sa-~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~ 409 (419)
..++++.+- .-+++..-+..+.+.+.|+++|||++++.+++|+++++.|+...+...+
T Consensus 48 s~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 48 SFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 345666655 4455667788999999999999999999999999999999998876553
No 73
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.21 E-value=0.0047 Score=49.46 Aligned_cols=67 Identities=15% Similarity=0.051 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhhhHhcccchhHHHHHHH-hHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheee
Q 014782 183 LGPALFHTIGHISACVSFSKVAVSFTHVIKS-AEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAA 249 (419)
Q Consensus 183 ~~~~l~~~~~~~~~~~al~~~~~~~~~li~~-~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~ 249 (419)
+...+++..+.++...+++++|++.+..+-. ..-+.+.+.++ ++||++++.+++++.++++|++.+.
T Consensus 33 ~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 33 IITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 4445667778888889999999998877754 88889999999 9999999999999999999998764
No 74
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.21 E-value=0.0067 Score=48.89 Aligned_cols=67 Identities=7% Similarity=0.067 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHhhhHhcccchhHHHHHH-HhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhhee
Q 014782 182 LLGPALFHTIGHISACVSFSKVAVSFTHVIK-SAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLA 248 (419)
Q Consensus 182 ~~~~~l~~~~~~~~~~~al~~~~~~~~~li~-~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~ 248 (419)
.+...+++..+.++...+++++|++.+..+- ...-+.+.+.++ ++||++++.|++++.++++|+..+
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3444566677888888999999999887664 477888999999 999999999999999999999865
No 75
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.19 E-value=0.013 Score=49.57 Aligned_cols=131 Identities=12% Similarity=0.160 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-hhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHH
Q 014782 259 GLWGAMISNIGFVLRNIYSKKSLGDFKEVN-GLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWV 337 (419)
Q Consensus 259 G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~-~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (419)
..++++.+.++-+++..+..++-+ +.. ++.........+++.+.....+.+...... . .+.++ |.+
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~---~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~-~------~~~p~--w~~- 68 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGK---ALGSPLVASFISFGVGFILLLIILLITGRPSLAS-L------SSVPW--WAY- 68 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhCccHHHHHHHHHHHHHHHHHHHHHhcccccch-h------ccCCh--HHh-
Confidence 356788888888888888888732 344 888888888888888877766655442221 1 12221 222
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHHHH-HHHHHHHHHHH-hh---cccccchhhhhHHHHHHHHHH
Q 014782 338 LLSGIFYHLYNQSSYQALDDISPLTFSVGNTM-KRVVVIVASIL-VF---RNPVRPLNALGSAIAIFGTFL 403 (419)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l-~~v~~~il~~l-~f---ge~ls~~~~iG~~lil~Gv~l 403 (419)
+.|+++..+-.+....+.+.++......... +-+.+++++.+ +| .+++++.+++|.++++.|+.+
T Consensus 69 -lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 69 -LGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred -ccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 2677777666677778899999888766555 45556777765 33 367899999999999999863
No 76
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.18 E-value=0.0016 Score=60.72 Aligned_cols=77 Identities=18% Similarity=0.297 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhcc
Q 014782 334 YFWVLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATAK 410 (419)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~~ 410 (419)
.....+-+++....|.+.|.++++.+|.++.+....+.+++.++++++++.+++..||++..+.++|+.+.......
T Consensus 17 ~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 17 TLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 45566777778888899999999999999999999999999999999999999999999999999999988765543
No 77
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.15 E-value=0.0033 Score=49.93 Aligned_cols=68 Identities=10% Similarity=0.102 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhhhHhcccchhHHHHH-HHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeec
Q 014782 183 LGPALFHTIGHISACVSFSKVAVSFTHVI-KSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAV 250 (419)
Q Consensus 183 ~~~~l~~~~~~~~~~~al~~~~~~~~~li-~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~ 250 (419)
+...+++..+..+.-.+++++|++.+..+ .....+.+.+.++ ++||+.+..+++++.++++|++.+-.
T Consensus 34 il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 34 ILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 44455667778888899999999987766 5577888999999 99999999999999999999986543
No 78
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.08 E-value=0.017 Score=54.09 Aligned_cols=112 Identities=15% Similarity=0.140 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhHhcccchhHH
Q 014782 129 IVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFHTIGHISACVSFSKVAVSFT 208 (419)
Q Consensus 129 ~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~ 208 (419)
..+....|+. +.+ |+....-|.+-..+...++.... +.+..+++.++. +..|+++..++.++..+.+...++.+
T Consensus 151 ~~Y~~~~~~~--~~~-~~~~~lPqaiGm~i~a~i~~~~~--~~~~~~k~~~~n-il~G~~w~ignl~~~is~~~~G~a~a 224 (269)
T PF06800_consen 151 WIYSVIPKAF--HVS-GWSAFLPQAIGMLIGAFIFNLFS--KKPFFEKKSWKN-ILTGLIWGIGNLFYLISAQKNGVATA 224 (269)
T ss_pred HHHHHHHHhc--CCC-hhHhHHHHHHHHHHHHHHHhhcc--cccccccchHHh-hHHHHHHHHHHHHHHHhHHhccchhh
Confidence 3444555652 222 55555445443333333332222 112222333444 55599999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHH-HhCCccChhHH----HHHHHHHhhhh
Q 014782 209 HVIKSAEPVFAVVFSS-FLGDIYPLKVW----LSILPIVLGCS 246 (419)
Q Consensus 209 ~li~~~~Pi~~~lls~-~l~er~~~~~~----~~v~l~~~Gv~ 246 (419)
-.+..+..+...+.+. ++||+-+++++ +|++++++|.+
T Consensus 225 f~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 225 FTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred hhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 9999999999999999 99999888766 45555555544
No 79
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.07 E-value=0.0057 Score=49.49 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=47.8
Q ss_pred HHHhhccCh-hHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhh
Q 014782 352 YQALDDISP-LTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQAT 408 (419)
Q Consensus 352 ~~~l~~~sa-~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~ 408 (419)
..++++.+- ..+++..-+..+.+.+.|+++|||++++.+++|+++++.|+...+...
T Consensus 48 ~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345667665 445677778899999999999999999999999999999999987654
No 80
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.96 E-value=0.029 Score=45.21 Aligned_cols=53 Identities=13% Similarity=0.264 Sum_probs=45.3
Q ss_pred HHhhccCh-hHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHH
Q 014782 353 QALDDISP-LTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYS 405 (419)
Q Consensus 353 ~~l~~~sa-~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~ 405 (419)
.++++.+. ..+++..-+..+.+.+.|+++|||++++.+++|+++++.|+...+
T Consensus 54 ~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 54 QAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 44566654 556788888999999999999999999999999999999998764
No 81
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.74 E-value=0.084 Score=44.61 Aligned_cols=116 Identities=11% Similarity=0.178 Sum_probs=81.5
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCcC-CCCCCCHHHHHHHHHHHHHHHHHHHHhhhHhcccchhHHH
Q 014782 131 FNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKLQ-PCPKISKPFIIALLGPALFHTIGHISACVSFSKVAVSFTH 209 (419)
Q Consensus 131 ~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~ 209 (419)
...+|-.+-+....|+.-+++.+..+.+.+.++....+. +.+..+...|+. ...|++......+..+....+.++.+.
T Consensus 16 q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~-~lGG~lG~~~V~~~~~~vp~lG~~~~~ 94 (138)
T PF04657_consen 16 QAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWA-YLGGLLGVFFVLSNIILVPRLGAALTT 94 (138)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHH-hccHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 334555555455569999999999988877666544332 222222223333 447888888899999999999888777
Q ss_pred HHH-HhHHHHHHHHHH--Hh---CCccChhHHHHHHHHHhhhhe
Q 014782 210 VIK-SAEPVFAVVFSS--FL---GDIYPLKVWLSILPIVLGCSL 247 (419)
Q Consensus 210 li~-~~~Pi~~~lls~--~l---~er~~~~~~~~v~l~~~Gv~l 247 (419)
.+. ..+.+..++++. ++ |+++++.|.+|++++++|+.+
T Consensus 95 ~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 95 ILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 664 456666677765 33 578999999999999999864
No 82
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.68 E-value=0.018 Score=46.18 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=46.7
Q ss_pred HHhhccCh-hHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHh
Q 014782 353 QALDDISP-LTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQ 406 (419)
Q Consensus 353 ~~l~~~sa-~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~ 406 (419)
.++++.+. ..+++..-+..+.+.+.|+++|||++++.+++|+++++.|+...+.
T Consensus 48 ~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 48 WAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 44566654 5677888899999999999999999999999999999999988754
No 83
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.49 E-value=0.025 Score=45.03 Aligned_cols=55 Identities=18% Similarity=0.296 Sum_probs=47.5
Q ss_pred HHhhccCh-hHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhh
Q 014782 353 QALDDISP-LTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQA 407 (419)
Q Consensus 353 ~~l~~~sa-~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~ 407 (419)
.++++.+- +.+++..-...+.+.+.|+++|||+++..+++|.+++++|+...+..
T Consensus 49 ~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 49 LALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 34666654 55679999999999999999999999999999999999999987654
No 84
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.36 E-value=0.026 Score=44.18 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhhhHhcccchhHHHHH-HHhHHHHHHHHHH-HhCCccChhHHHHHHHH
Q 014782 184 GPALFHTIGHISACVSFSKVAVSFTHVI-KSAEPVFAVVFSS-FLGDIYPLKVWLSILPI 241 (419)
Q Consensus 184 ~~~l~~~~~~~~~~~al~~~~~~~~~li-~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~ 241 (419)
....++..+..+...+++++|.+.+..+ .....+.+.+.+. ++||+++..|++|+.++
T Consensus 34 ~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 34 LAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3344677788899999999999998665 5699999999999 99999999999998764
No 85
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.26 E-value=0.0043 Score=57.04 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhhHhcccchhHH
Q 014782 129 IVFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFHTIGHISACVSFSKVAVSFT 208 (419)
Q Consensus 129 ~~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~ 208 (419)
....++.+++-++.++-+.+..+-.+....-+..+...+....+. .+++|..+..+|++..+++.+...|+|.=-++-.
T Consensus 204 asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~-cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpv 282 (346)
T KOG4510|consen 204 ASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPH-CGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPV 282 (346)
T ss_pred hhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecCc-cccceEEEEEehhhhhHHHHHHHHHhhhhccCCe
Confidence 445567777766655444444443333333233333334334433 4566667777899999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhhe
Q 014782 209 HVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSL 247 (419)
Q Consensus 209 ~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l 247 (419)
++.+.+..+|..+... ++++.++++.|+|+++++...+.
T Consensus 283 aim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~ 322 (346)
T KOG4510|consen 283 AIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVW 322 (346)
T ss_pred ehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHH
Confidence 9999999999999999 99999999999987766554443
No 86
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.19 E-value=0.27 Score=47.48 Aligned_cols=119 Identities=18% Similarity=0.275 Sum_probs=84.1
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHhcC---hhhhhhhhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhccChhH
Q 014782 286 EVNGLNLYGWITIISLFYLFPVAIFVEG---SQWIQGYHNAIAAVGKPSTFYFWVLLSGIFYHLYNQSSYQALDDISPLT 362 (419)
Q Consensus 286 ~~~~~~~~~~~~~~~~i~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~~ 362 (419)
++.+.+..+..-++-.+++....+.-+. ..........+ +.... -..-+..-++++..-|-..|..+++.+|.+
T Consensus 44 ~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i--~~~~~-~~lk~~vPa~iYalqNnl~yval~~ldaat 120 (345)
T KOG2234|consen 44 MFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEI--LAAPR-ETLKVSVPALIYALQNNLQYVALSNLDAAT 120 (345)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHH--HhChH-HHHHHHHHHHHHHHhhhHHHHHHhcCCchh
Confidence 4566677776666666666655443321 11111111110 11110 134455556666677778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhh
Q 014782 363 FSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQA 407 (419)
Q Consensus 363 ~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~ 407 (419)
+.+...++...+.++++++++++++..||...++.+.|+.+.+..
T Consensus 121 yqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~ 165 (345)
T KOG2234|consen 121 YQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLP 165 (345)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999998843
No 87
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.08 E-value=0.016 Score=53.88 Aligned_cols=132 Identities=14% Similarity=0.170 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHH
Q 014782 259 GLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVL 338 (419)
Q Consensus 259 G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (419)
|.+.+++|+++++...|=.||.- .-|++-.+.+++....+..+...++.+.+.+ +-+.+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~----~gDg~~fQw~~~~~i~~~g~~v~~~~~~p~f-----------------~p~am 59 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFD----TGDGFFFQWVMCSGIFLVGLVVNLILGFPPF-----------------YPWAM 59 (254)
T ss_pred CchhHHHHHHHhcccceeeEecc----CCCcHHHHHHHHHHHHHHHHHHHHhcCCCcc-----------------eeHHH
Confidence 67889999999999988888872 2477777766665554444444333332222 22334
Q ss_pred HHHHHHHHHHHHHHHHhhccCh-hHHHHHHHHHHHHHHHHHHH-hhcccc-----cchhhhhHHHHHHHHHHHHhhhccc
Q 014782 339 LSGIFYHLYNQSSYQALDDISP-LTFSVGNTMKRVVVIVASIL-VFRNPV-----RPLNALGSAIAIFGTFLYSQATAKK 411 (419)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~sa-~~~sv~~~l~~v~~~il~~l-~fge~l-----s~~~~iG~~lil~Gv~l~~~~~~~~ 411 (419)
++|.+-...|.+..-+++.++= +-..+.+..+-+.+...|-+ +||++. .+..++|++++++|..++...|..+
T Consensus 60 lgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 60 LGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 4455444455555555555543 33445566666666666654 676432 4679999999999999998765443
No 88
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.01 E-value=0.12 Score=47.33 Aligned_cols=65 Identities=9% Similarity=0.082 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhhe
Q 014782 183 LGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSL 247 (419)
Q Consensus 183 ~~~~l~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l 247 (419)
....+..+.+..+..+.++|.+.....+...+.++++.++++ +++|+++..+|+|+.+++.|+.+
T Consensus 156 ~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 156 WIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 334455667778899999999999999999999999999999 99999999999999999999764
No 89
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.00 E-value=0.028 Score=54.05 Aligned_cols=118 Identities=17% Similarity=0.151 Sum_probs=80.0
Q ss_pred cHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHH
Q 014782 256 NFGGLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYF 335 (419)
Q Consensus 256 ~~~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (419)
...|+++++.|+++.+...+++|+-..++++ +...-- . . +...+ ... .|+
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~-~~~~~~--~---~-----~~~~l-----------------~~~--~W~ 54 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR-GSLRAG--S---G-----GRSYL-----------------RRP--LWW 54 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccccc--c---h-----hhHHH-----------------hhH--HHH
Confidence 4579999999999999999999986443222 111100 0 0 00000 001 133
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHh
Q 014782 336 WVLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQ 406 (419)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~ 406 (419)
..+.....+- ...+.++...++...+.++.+..++..+++..++||+++...+.|.++++.|..+...
T Consensus 55 ~G~~~~~~g~---~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 55 IGLLLMVLGE---ILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHHHHHhcch---HHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 3222222222 3334567788888899999999999999999999999999999999999999876543
No 90
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.93 E-value=0.024 Score=45.85 Aligned_cols=63 Identities=19% Similarity=0.315 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhhhHhcccchhHHHHH-HHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhhee
Q 014782 186 ALFHTIGHISACVSFSKVAVSFTHVI-KSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLA 248 (419)
Q Consensus 186 ~l~~~~~~~~~~~al~~~~~~~~~li-~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~ 248 (419)
-+++-.+...+++.+...+.+.+.-+ +++.=+||++.++ +.+|..++++++|+.++++|+.+.
T Consensus 48 f~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 48 FLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 44455677888899999999998888 5899999999999 666667889999999999999875
No 91
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.60 E-value=0.0053 Score=55.86 Aligned_cols=137 Identities=18% Similarity=0.266 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHHHH
Q 014782 259 GLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFWVL 338 (419)
Q Consensus 259 G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (419)
+++.+++=++.|+.--....|. .+ +|.+-..-+.+.+.++.+...++ ..+... .. .+..-+
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~-GG----~p~qQ~lGtT~GALifaiiv~~~-~~p~~T-----------~~--~~iv~~ 63 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKF-GG----KPYQQTLGTTLGALIFAIIVFLF-VSPELT-----------LT--IFIVGF 63 (288)
T ss_pred hHHHHHHHHHHhcccceeeeec-CC----ChhHhhhhccHHHHHHHHHHhee-ecCccc-----------hh--hHHHHH
Confidence 5678888899998776666555 21 34333333333344443333232 222211 11 366666
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHH-HHHHHHHHHHHHHHHHhhcccccchhh----hhHHHHHHHHHHHHhhhccccc
Q 014782 339 LSGIFYHLYNQSSYQALDDISPLTFS-VGNTMKRVVVIVASILVFRNPVRPLNA----LGSAIAIFGTFLYSQATAKKKV 413 (419)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~sa~~~s-v~~~l~~v~~~il~~l~fge~ls~~~~----iG~~lil~Gv~l~~~~~~~~~~ 413 (419)
.+|..-...+...+.+++..+...+. +.+-++.+-+.++|+++|||--+..++ +..++++.|+++-++.++.+|+
T Consensus 64 isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~ 143 (288)
T COG4975 64 ISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKE 143 (288)
T ss_pred HhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccccc
Confidence 77777667777888888888887776 445577888899999999999887654 3456677788777766654443
Q ss_pred c
Q 014782 414 E 414 (419)
Q Consensus 414 ~ 414 (419)
+
T Consensus 144 ~ 144 (288)
T COG4975 144 E 144 (288)
T ss_pred c
Confidence 3
No 92
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.58 E-value=0.49 Score=40.25 Aligned_cols=119 Identities=18% Similarity=0.210 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhCcCCCCCCC--HHHHHHHHHHHHHHHHHHHHhhhHhcccchhH
Q 014782 130 VFNIYNKKALNVFPFPWLLASFQLFAGSVWMLVLWSLKLQPCPKIS--KPFIIALLGPALFHTIGHISACVSFSKVAVSF 207 (419)
Q Consensus 130 ~~~~~~K~~l~~~~~P~~l~~~r~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~ 207 (419)
...-.|-.+-+....|..-.+..+.++.+++......+ .+.+... .+..++.+..|++.+............+.++.
T Consensus 19 ~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~-~~~~~~a~~~~~pwW~~~GG~lGa~~vt~s~~l~p~lGa~~ 97 (150)
T COG3238 19 LQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIK-QGHPGLAAVASAPWWAWIGGLLGAIFVTSSILLAPRLGAAT 97 (150)
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHh-cCCCchhhccCCchHHHHccchhhhhhhhhHHhccchhHHH
Confidence 33445555555566799999999999888776655442 2222222 22233344456777777777777777766655
Q ss_pred HH-HHHHhHHHHHHHHHH--Hh---CCccChhHHHHHHHHHhhhheee
Q 014782 208 TH-VIKSAEPVFAVVFSS--FL---GDIYPLKVWLSILPIVLGCSLAA 249 (419)
Q Consensus 208 ~~-li~~~~Pi~~~lls~--~l---~er~~~~~~~~v~l~~~Gv~l~~ 249 (419)
.+ ++-+.+.+..+++.. ++ ++++++.+++|+++.++|+.++.
T Consensus 98 t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 98 TIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 44 456677777777775 55 46799999999999999965543
No 93
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.49 E-value=0.52 Score=40.12 Aligned_cols=138 Identities=12% Similarity=0.105 Sum_probs=84.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHH
Q 014782 257 FGGLWGAMISNIGFVLRNIYSKKSLGDFKEV-NGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYF 335 (419)
Q Consensus 257 ~~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (419)
...+++++.+.++-..+.-..-++-+. . +|..-.......|++.+.....+.++..... .. .+.++ |
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~---~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a-~~-----~~~pw--W- 71 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARY---LGSPLLASLISFLVGTVLLLILLLIKQGHPGLA-AV-----ASAPW--W- 71 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHH---cCChHHHHHHHHHHHHHHHHHHHHHhcCCCchh-hc-----cCCch--H-
Confidence 456778888888888888777777332 3 4666666666777777777655544322111 11 12221 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHH-HHHHHHHHHHHHHhh-c---ccccchhhhhHHHHHHHHHHHHhh
Q 014782 336 WVLLSGIFYHLYNQSSYQALDDISPLTFSVGN-TMKRVVVIVASILVF-R---NPVRPLNALGSAIAIFGTFLYSQA 407 (419)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~-~l~~v~~~il~~l~f-g---e~ls~~~~iG~~lil~Gv~l~~~~ 407 (419)
..+.|+++..+-........+.++.+...+. .-+-+.+++++.+=+ | .+++...++|++++++|+++....
T Consensus 72 -~~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~ 147 (150)
T COG3238 72 -AWIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRF 147 (150)
T ss_pred -HHHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhccc
Confidence 2233455555555555667788776665433 335555566664433 2 568899999999999996665443
No 94
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=95.09 E-value=0.073 Score=51.23 Aligned_cols=136 Identities=15% Similarity=0.083 Sum_probs=99.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHH-HHHHh--CcCC----CCCCCHHHHH
Q 014782 112 NKTLKLALVFGFWYFQNIVFNIYNKKALNV----FPFPWLLASFQLFAGSVWML-VLWSL--KLQP----CPKISKPFII 180 (419)
Q Consensus 112 ~~~l~~~~~~~~w~~~~~~~~~~~K~~l~~----~~~P~~l~~~r~~~~~~~l~-~~~~~--~~~~----~~~~~~~~~~ 180 (419)
.-.+.....+..+.+....-+++.|.+++. .+ +..+...+--++.+.++ +++.. +... ....+.. ..
T Consensus 159 ~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~-~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~ 236 (316)
T KOG1441|consen 159 SFNLFGFISAMISNLAFALRNILSKKLLTSKGESLN-SMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FL 236 (316)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC-chHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hH
Confidence 345677778888888888889999999953 44 66666666666666665 55432 1111 0111222 22
Q ss_pred HHHHHHHHHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheee
Q 014782 181 ALLGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAA 249 (419)
Q Consensus 181 ~~~~~~l~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~ 249 (419)
..+..+++....+...+..+..+++-++++.....=+++.+.++ +++++++..+.+|.+++++|+.+-.
T Consensus 237 ~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 237 ILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 33444577777889999999999999999999999999999999 9999999999999999999998754
No 95
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=94.77 E-value=0.13 Score=40.20 Aligned_cols=48 Identities=17% Similarity=0.128 Sum_probs=26.7
Q ss_pred HHHHHhhccChhHH-HHHHHHHHHHHHHHHHHhhcccccchhhhhHHHH
Q 014782 350 SSYQALDDISPLTF-SVGNTMKRVVVIVASILVFRNPVRPLNALGSAIA 397 (419)
Q Consensus 350 ~~~~~l~~~sa~~~-sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~li 397 (419)
+...++++.+...+ ++..-+..+.+.+.|+++|||+++..+++|+.+|
T Consensus 45 ~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 45 FLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 33456777766444 6777788999999999999999999999999875
No 96
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.67 E-value=0.59 Score=44.20 Aligned_cols=135 Identities=11% Similarity=0.085 Sum_probs=91.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHhCcCCCC-----CCCHHHHHHHHHHH
Q 014782 113 KTLKLALVFGFWYFQNIVFNIYNKKALNVFP-FPWLLASFQLFAGSVWMLVLWSLKLQPCP-----KISKPFIIALLGPA 186 (419)
Q Consensus 113 ~~l~~~~~~~~w~~~~~~~~~~~K~~l~~~~-~P~~l~~~r~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 186 (419)
.......++....++=+..+...+.+++.+. .++.+.+.--++..++..........-.+ +..++.++.++..+
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s 248 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS 248 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH
Confidence 4456666677776666666667777777543 13333333223333322222211111111 22356688899999
Q ss_pred HHHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhhe
Q 014782 187 LFHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSL 247 (419)
Q Consensus 187 l~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l 247 (419)
.+.++++.+-+.-++.-..=+.++|.-+-=+++++++. .++.++++.+|+|+.+.+.|+.+
T Consensus 249 ~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 249 TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 99999999888888876666777888888899999999 99999999999999999988864
No 97
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.48 E-value=0.091 Score=47.62 Aligned_cols=132 Identities=15% Similarity=0.129 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCC---------hhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHHH
Q 014782 266 SNIGFVLRNIYSKKSLGDFKEVN---------GLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYFW 336 (419)
Q Consensus 266 s~l~~a~~~v~~k~~~~~~~~~~---------~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (419)
--+||=.|.+.++|+.+++.+.+ .+.+.++++....++.=....+........ ... +..
T Consensus 21 ifvCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D~----------t~~--~~Y 88 (337)
T KOG1580|consen 21 IFVCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTEIDN----------TPT--KMY 88 (337)
T ss_pred hhheehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeecccccccC----------Ccc--hHH
Confidence 34688999999999976544332 233444454444444322211111111111 111 222
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhhcc
Q 014782 337 VLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQATAK 410 (419)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~~~ 410 (419)
. ..+....+...+..++++.++=.+.-+.-..+|+-.+++|+++.+..-+|..+.-.++|+.|+.++.+.++|
T Consensus 89 a-Acs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K 161 (337)
T KOG1580|consen 89 A-ACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK 161 (337)
T ss_pred H-HHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc
Confidence 2 222333344566778888888888888888999999999999999999999999999999999999876544
No 98
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=94.05 E-value=1.8 Score=41.80 Aligned_cols=142 Identities=17% Similarity=0.170 Sum_probs=75.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHH-HHHHHHHHHHHHHH-HHhcChhhhhhhhhhhhhcCCchHHH
Q 014782 257 FGGLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYG-WITIISLFYLFPVA-IFVEGSQWIQGYHNAIAAVGKPSTFY 334 (419)
Q Consensus 257 ~~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~-~~~~~~~i~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (419)
..|+++..++++|.+.+.+=.||. + .-+++..- .+.+++-+ ..|.. ...+-|+..+-+. ..+.. .+
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkv-k----~WsWEs~Wlv~gi~swl-i~P~~~a~l~ip~~~~i~~----~~~~~--~l 73 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKV-K----GWSWESYWLVQGIFSWL-IVPWLWALLAIPDFFSIYS----ATPAS--TL 73 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhc-C----CccHHHHHHHHHHHHHH-HHHHHHHHHhCCcHHHHHH----hCChh--HH
Confidence 579999999999999999998887 2 23344333 33344433 33442 2233333332121 12222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccC-hhHHHHHHHHHHHHHHHHHHHhhc-------ccccchhhhhHHHHHHHHHHHHh
Q 014782 335 FWVLLSGIFYHLYNQSSYQALDDIS-PLTFSVGNTMKRVVVIVASILVFR-------NPVRPLNALGSAIAIFGTFLYSQ 406 (419)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~s-a~~~sv~~~l~~v~~~il~~l~fg-------e~ls~~~~iG~~lil~Gv~l~~~ 406 (419)
+...+.|+.--...+..=..+++.+ ++..++..-+..+++.++--++.| ++-....++|.++++.|+.+..+
T Consensus 74 ~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~ 153 (344)
T PF06379_consen 74 FWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGK 153 (344)
T ss_pred HHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhH
Confidence 3333333332111111112344443 244445444555555555444433 23345689999999999999887
Q ss_pred hhcc
Q 014782 407 ATAK 410 (419)
Q Consensus 407 ~~~~ 410 (419)
+..+
T Consensus 154 AG~~ 157 (344)
T PF06379_consen 154 AGSM 157 (344)
T ss_pred HHHh
Confidence 6543
No 99
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=89.50 E-value=0.52 Score=38.17 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=39.4
Q ss_pred HHhhccChhHHH-HHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHH
Q 014782 353 QALDDISPLTFS-VGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFL 403 (419)
Q Consensus 353 ~~l~~~sa~~~s-v~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l 403 (419)
..+++.+-..+. +.+.+.-+++.+.|+++.+|..+...++|+++++.|+.+
T Consensus 60 ~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 60 LLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 345555543333 456788899999998888888899999999999999764
No 100
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=87.53 E-value=5.1 Score=39.19 Aligned_cols=127 Identities=9% Similarity=0.020 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHhcC----CChHHHHHHH---HHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHH-HHHHHHhh
Q 014782 126 FQNIVFNIYNKKALNVF----PFPWLLASFQ---LFAGSVWMLVLWSLKLQPCPKISKPFIIALLGPALFH-TIGHISAC 197 (419)
Q Consensus 126 ~~~~~~~~~~K~~l~~~----~~P~~l~~~r---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~ 197 (419)
+..+.+.++.|.-.++- .-+.++.++- ++.....+.++-..+..+..-++..+...++..++.. .+.-+++.
T Consensus 257 ~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~ligtvvSDylW~ 336 (416)
T KOG2765|consen 257 LLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIGTVVSDYLWA 336 (416)
T ss_pred HHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHHHHHHHHHHH
Confidence 33366677777766553 2234333332 2222222333333333222222223333344445443 45668888
Q ss_pred hHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeeccc
Q 014782 198 VSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTE 252 (419)
Q Consensus 198 ~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~ 252 (419)
+|.-.++.-.+++-.+.+....++... +.++++++..++|.+.+++|-+++...+
T Consensus 337 ~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 337 KAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred HHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 999999999999999999889999999 8889999999999999999999887554
No 101
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.19 E-value=16 Score=34.98 Aligned_cols=132 Identities=13% Similarity=0.094 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCCh-hhHHHHHHHHHHHHHHHHHHH--hcChhhhhhhhhhhhhcCCchHHHHH
Q 014782 260 LWGAMISNIGFVLRNIYSKKSLGDFKEVNG-LNLYGWITIISLFYLFPVAIF--VEGSQWIQGYHNAIAAVGKPSTFYFW 336 (419)
Q Consensus 260 ~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~-~~~~~~~~~~~~i~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (419)
...++.-+++..+-.+..|-.+.. .+.+. ..+..+|++.+.+.+...-.. .+.+... +... ..|-+.
T Consensus 14 l~sa~~Y~~sS~lm~vvNK~vls~-y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~--~~~~-kk~~P~------ 83 (314)
T KOG1444|consen 14 LLSALFYCLSSILMTVVNKIVLSS-YNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLD--LRTA-KKWFPV------ 83 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcC--hHHH-HHHccH------
Confidence 444555555555555566665553 23333 345568888777766555332 1211111 1100 011111
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHH
Q 014782 337 VLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYS 405 (419)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~ 405 (419)
.++.++..+.....+++.+-..+.++..+.++.+.+...++||.+++...+......++|...+.
T Consensus 84 ----~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~ 148 (314)
T KOG1444|consen 84 ----SLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA 148 (314)
T ss_pred ----HHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence 12222222333456889999999999999999999999999999999999999888888876554
No 102
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=85.67 E-value=0.41 Score=42.33 Aligned_cols=61 Identities=23% Similarity=0.199 Sum_probs=53.4
Q ss_pred HHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhh
Q 014782 347 YNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQA 407 (419)
Q Consensus 347 ~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~ 407 (419)
.|+....++++++|..++-....+..+..+++++++||++....++..++.+.|++...+.
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 4555667889999999999999999999999999999999999999999999888766544
No 103
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=82.42 E-value=51 Score=32.13 Aligned_cols=227 Identities=15% Similarity=0.170 Sum_probs=123.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhHhcccchhHHHHH-HHhHHHHHHHHHH-HhC-------CccChhHHHHHHHHHhhh
Q 014782 175 SKPFIIALLGPALFHTIGHISACVSFSKVAVSFTHVI-KSAEPVFAVVFSS-FLG-------DIYPLKVWLSILPIVLGC 245 (419)
Q Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~li-~~~~Pi~~~lls~-~l~-------er~~~~~~~~v~l~~~Gv 245 (419)
+.+.+......|++..++...+-.+.+|+.++..+-+ ..++-++-.++-. +.+ ++-....++|+++.++|+
T Consensus 69 ~~~~l~~~~l~G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGI 148 (344)
T PF06379_consen 69 PASTLFWTFLFGVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGI 148 (344)
T ss_pred ChhHHHHHHHHHHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHH
Confidence 3445666677788888888888888899877765543 3344455555544 433 333457889999999999
Q ss_pred heeeccc-----------cccc-HHhHHHHHHHHHHHHHHHHHHHhh--cCC---CCCCChhh----HHHHHHHHHHHHH
Q 014782 246 SLAAVTE-----------VSFN-FGGLWGAMISNIGFVLRNIYSKKS--LGD---FKEVNGLN----LYGWITIISLFYL 304 (419)
Q Consensus 246 ~l~~~~~-----------~~~~-~~G~~~~l~s~l~~a~~~v~~k~~--~~~---~~~~~~~~----~~~~~~~~~~i~l 304 (419)
++....+ .+++ -.|++.+++|.+..|+.++-.+.- +++ +...+++. ........+++.-
T Consensus 149 ai~g~AG~~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN 228 (344)
T PF06379_consen 149 AICGKAGSMKEKELGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITN 228 (344)
T ss_pred HHHhHHHHhhhhhhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHH
Confidence 9875421 1223 379999999999999888755432 000 01122221 1112222333333
Q ss_pred HHHHHHhc--Chhh--hhhhhhhhhhcCCc-hHHHHHHHHHHHHHHHHHHHHHHHhhc----cChhHHHHHHHHHHHHHH
Q 014782 305 FPVAIFVE--GSQW--IQGYHNAIAAVGKP-STFYFWVLLSGIFYHLYNQSSYQALDD----ISPLTFSVGNTMKRVVVI 375 (419)
Q Consensus 305 ~~~~~~~~--~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~----~sa~~~sv~~~l~~v~~~ 375 (419)
+...++.. ...+ ..++.. -... ..=+....+.|+.-+......=+.-.+ .+...-.+.+.+..+++-
T Consensus 229 ~~yc~~~l~~~k~~s~~~d~~~----~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~sn 304 (344)
T PF06379_consen 229 LIYCLILLAKNKNWSWKGDYSV----AKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSN 304 (344)
T ss_pred HHHHHHHHhhcCCCcccccccc----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHH
Confidence 33333221 1111 111110 0010 001333444444433222111122223 335566688888888888
Q ss_pred HHHHHhhcc------cccchhhhhHHHHHHHHHHHHh
Q 014782 376 VASILVFRN------PVRPLNALGSAIAIFGTFLYSQ 406 (419)
Q Consensus 376 il~~l~fge------~ls~~~~iG~~lil~Gv~l~~~ 406 (419)
+.|+++ +| +.-..-++|.++++.++.+.-+
T Consensus 305 vwGl~l-kEWKg~s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 305 VWGLIL-KEWKGASKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred HHHHHH-HHhccCCcccHHHHHHHHHHHHHHHHHHhc
Confidence 888755 33 2334568899888888776543
No 104
>PRK02237 hypothetical protein; Provisional
Probab=80.71 E-value=3.5 Score=32.81 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhh
Q 014782 361 LTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQAT 408 (419)
Q Consensus 361 ~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~ 408 (419)
-.++.++-.-.+.+++.++.+-|++++...++|.++++.|+.+..+..
T Consensus 60 RvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 60 RVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 345677778888999999999999999999999999999998876543
No 105
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=79.20 E-value=4.4 Score=38.10 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHh
Q 014782 341 GIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQ 406 (419)
Q Consensus 341 ~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~ 406 (419)
+++-.......|..+..++|..+.+.--...+++-+++..+++.+++..||+|+..+.+|++..-.
T Consensus 93 al~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 93 ALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 334333444445556677888888888888899999999999999999999999999999876543
No 106
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=78.71 E-value=43 Score=30.59 Aligned_cols=99 Identities=9% Similarity=-0.016 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hCcCCCC----CCCHHHHHHHHHHHHHHHHHHHHhhhHhcccchhHHHHHHHhHHHHHH
Q 014782 146 WLLASFQLFAGSVWMLVLWS-LKLQPCP----KISKPFIIALLGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFAV 220 (419)
Q Consensus 146 ~~l~~~r~~~~~~~l~~~~~-~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~ 220 (419)
.--.+..-+.+..+++.+-. ..-++.. ..+.+.+.+++..|++..+-.++.-|+++-++...+.++.++.-....
T Consensus 186 ~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~a 265 (309)
T COG5070 186 FDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIA 265 (309)
T ss_pred hhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHH
Confidence 44455566666655554422 1111111 233445667788888888888999999999999999999999888888
Q ss_pred HHHH-HhCCccChhHHHHHHHHHhh
Q 014782 221 VFSS-FLGDIYPLKVWLSILPIVLG 244 (419)
Q Consensus 221 lls~-~l~er~~~~~~~~v~l~~~G 244 (419)
+.+. +++|..+..++.++++++..
T Consensus 266 laGlvffdap~nf~si~sillGfls 290 (309)
T COG5070 266 LAGLVFFDAPVNFLSIFSILLGFLS 290 (309)
T ss_pred HhhhhhcCCchhHHHHHHHHHHHHH
Confidence 8888 88888887777766665543
No 107
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.68 E-value=0.7 Score=44.08 Aligned_cols=118 Identities=20% Similarity=0.213 Sum_probs=76.6
Q ss_pred cHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHhcChhhhhhhhhhhhhcCCchHHHH
Q 014782 256 NFGGLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFVEGSQWIQGYHNAIAAVGKPSTFYF 335 (419)
Q Consensus 256 ~~~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (419)
+..|.++++.|.+..+...++.||...+ ...... -..++.. .+. ..+ +|+
T Consensus 19 ~~~G~~LaissS~~Ig~sfilkKkgl~r---~~~~~~----------------ra~~gg~---~yl------~~~--~Ww 68 (335)
T KOG2922|consen 19 NIIGLVLAISSSIFIGSSFILKKKGLKR---AGASGL----------------RAGEGGY---GYL------KEP--LWW 68 (335)
T ss_pred ceeeeeehhhccEEEeeehhhhHHHHHH---Hhhhcc----------------cccCCCc---chh------hhH--HHH
Confidence 4678888888888888888888876432 110000 0001110 010 011 244
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHh
Q 014782 336 WVLLSGIFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQ 406 (419)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~ 406 (419)
..++.-..+=..|+ .+....++.-.+.++.+..+.+.+++..+++|+++....+|++++++|..+...
T Consensus 69 ~G~ltm~vGei~NF---aAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 69 AGMLTMIVGEIANF---AAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHHHHHHhHhhH---HHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 43333333444443 345567777788888899999999999999999999999999999999765443
No 108
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=77.23 E-value=4.1 Score=32.38 Aligned_cols=48 Identities=17% Similarity=0.110 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhh
Q 014782 361 LTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQAT 408 (419)
Q Consensus 361 ~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~ 408 (419)
-.++.++-.-.+.+++.++.+-|++++...++|.++++.|+.+..+..
T Consensus 58 RvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 58 RVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred hHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 345677778889999999999999999999999999999998776543
No 109
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=65.76 E-value=2 Score=40.13 Aligned_cols=63 Identities=13% Similarity=0.071 Sum_probs=0.0
Q ss_pred cchhHHHHHHHhHHHHHHHHHH--HhCCc-cChhHHHHHHHHHhhhheeecccc--cccHHhHHHHHH
Q 014782 203 VAVSFTHVIKSAEPVFAVVFSS--FLGDI-YPLKVWLSILPIVLGCSLAAVTEV--SFNFGGLWGAMI 265 (419)
Q Consensus 203 ~~~~~~~li~~~~Pi~~~lls~--~l~er-~~~~~~~~v~l~~~Gv~l~~~~~~--~~~~~G~~~~l~ 265 (419)
.+-+...++.+...+.+.++-. ++|+| +-..-.+.++++++-..+...-.. +.-+.|+++.++
T Consensus 47 ~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l 114 (381)
T PF05297_consen 47 LTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFL 114 (381)
T ss_dssp --------------------------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4444445666655555544443 55555 344455555555554444433222 222456554433
No 110
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=65.48 E-value=6.2 Score=31.28 Aligned_cols=29 Identities=7% Similarity=0.046 Sum_probs=25.5
Q ss_pred HHHHHHhhcccccchhhhhHHHHHHHHHH
Q 014782 375 IVASILVFRNPVRPLNALGSAIAIFGTFL 403 (419)
Q Consensus 375 ~il~~l~fge~ls~~~~iG~~lil~Gv~l 403 (419)
+.+++++++|++++.++.|.++++++++.
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 46778899999999999999999888764
No 111
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=64.70 E-value=1.7e+02 Score=29.95 Aligned_cols=23 Identities=13% Similarity=-0.031 Sum_probs=18.9
Q ss_pred ccchhhhhHHHHHHHHHHHHhhh
Q 014782 386 VRPLNALGSAIAIFGTFLYSQAT 408 (419)
Q Consensus 386 ls~~~~iG~~lil~Gv~l~~~~~ 408 (419)
++..|++.+.++++|++++.+.+
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Confidence 68889999999999987765544
No 112
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=63.94 E-value=1.8e+02 Score=29.78 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=16.9
Q ss_pred hhhhhHHHHHHHHHHHHhhhccc
Q 014782 389 LNALGSAIAIFGTFLYSQATAKK 411 (419)
Q Consensus 389 ~~~iG~~lil~Gv~l~~~~~~~~ 411 (419)
....|.++...|+.+|.+.++++
T Consensus 417 ~~~~~~~~~~~g~~~y~~~~~~~ 439 (473)
T TIGR00905 417 YLLLGFILYAPGIIFYGRARKER 439 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678888899988887755544
No 113
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=60.06 E-value=12 Score=29.70 Aligned_cols=62 Identities=19% Similarity=0.248 Sum_probs=46.1
Q ss_pred HHHHHHHHhhhHhcccchhHHHHH-HHhHHHHHHHHHHHhCCc-cChhHHHHHHHHHhhhheee
Q 014782 188 FHTIGHISACVSFSKVAVSFTHVI-KSAEPVFAVVFSSFLGDI-YPLKVWLSILPIVLGCSLAA 249 (419)
Q Consensus 188 ~~~~~~~~~~~al~~~~~~~~~li-~~~~Pi~~~lls~~l~er-~~~~~~~~v~l~~~Gv~l~~ 249 (419)
+.-.+..++++-+++.+.+.+.-+ ++++-.|+.+.+..+||+ ...+.++|..+.++|+.+..
T Consensus 61 lNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 61 LNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 334456777888888888776644 567888999999966655 56778899999999987653
No 114
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.66 E-value=25 Score=27.48 Aligned_cols=30 Identities=10% Similarity=0.186 Sum_probs=26.6
Q ss_pred HHHHHHhhcccccchhhhhHHHHHHHHHHH
Q 014782 375 IVASILVFRNPVRPLNALGSAIAIFGTFLY 404 (419)
Q Consensus 375 ~il~~l~fge~ls~~~~iG~~lil~Gv~l~ 404 (419)
+.++++.++|++.+.++.|.+++++|+++.
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 457889999999999999999999998765
No 115
>PRK02237 hypothetical protein; Provisional
Probab=59.20 E-value=24 Score=28.17 Aligned_cols=38 Identities=8% Similarity=0.005 Sum_probs=30.9
Q ss_pred hHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecc
Q 014782 214 AEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVT 251 (419)
Q Consensus 214 ~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~ 251 (419)
...+...+..+ +-|+|+++.+++|..++++|+.++...
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 44455556777 889999999999999999999877543
No 116
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=58.37 E-value=27 Score=27.87 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=31.6
Q ss_pred hHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecc
Q 014782 214 AEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVT 251 (419)
Q Consensus 214 ~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~ 251 (419)
...+...+..+ +-|+|+++.+++|..++++|+.++...
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 44556667778 889999999999999999999987653
No 117
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=57.15 E-value=2.3e+02 Score=28.94 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=17.8
Q ss_pred hhhhhHHHHHHHHHHHHhhhccc
Q 014782 389 LNALGSAIAIFGTFLYSQATAKK 411 (419)
Q Consensus 389 ~~~iG~~lil~Gv~l~~~~~~~~ 411 (419)
...+|.++.+.|+.+|.+.++++
T Consensus 412 ~~~~~~~~~~~g~~~y~~~~~~~ 434 (468)
T TIGR03810 412 YLLLSAILYAPGIYFYARARKEK 434 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 56788888899999997755543
No 118
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=56.83 E-value=4.4 Score=38.52 Aligned_cols=137 Identities=11% Similarity=0.068 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHh---cCh--hhhhhhhhhhhhcCCchHHHHHHH
Q 014782 264 MISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIFV---EGS--QWIQGYHNAIAAVGKPSTFYFWVL 338 (419)
Q Consensus 264 l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 338 (419)
+++.+||+.+-..+|-. .++.+.+. ..+|-..++.++...+..+. -++ ....++.....+.+.. -+...+
T Consensus 2 ~itmlcwGSW~nt~kL~-~r~gR~~q--h~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~--sv~~A~ 76 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLA-ERRGRLPQ--HFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWP--SVLFAM 76 (336)
T ss_pred eeehhhhcChHHHHHHH-HhcCCccc--eehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChH--HHHHHH
Confidence 45677888777776655 21222322 23443334443333332222 111 1111222222222333 256666
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHH-HHHHHHHHHHHHHhhccccc--chhhhhHHHHHHHHHHHHh
Q 014782 339 LSGIFYHLYNQSSYQALDDISPLTFSVGN-TMKRVVVIVASILVFRNPVR--PLNALGSAIAIFGTFLYSQ 406 (419)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~sa~~~sv~~-~l~~v~~~il~~l~fge~ls--~~~~iG~~lil~Gv~l~~~ 406 (419)
..|++.-+.|++...++...+-..+-+++ .+.-++++++-|+ ++.+.. ..-+.|.+++++++.+-..
T Consensus 77 aGGvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a~iLF~GV~cf~iAI~lga~ 146 (336)
T PF07168_consen 77 AGGVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRAEILFPGVACFLIAIILGAA 146 (336)
T ss_pred HhhHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCceEEEccHHHHHHHHHHHHH
Confidence 67777667777665655555443332111 1122223333332 344443 3456688887777766443
No 119
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=55.67 E-value=4.6 Score=37.42 Aligned_cols=64 Identities=17% Similarity=0.116 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHH
Q 014782 342 IFYHLYNQSSYQALDDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYS 405 (419)
Q Consensus 342 ~~~~~~~~~~~~~l~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~ 405 (419)
+.-.-.|+....+.++++-.....+.+...+...+++|++++.+-.+.++.|.++++.|+....
T Consensus 86 ~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV 149 (336)
T KOG2766|consen 86 FVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVV 149 (336)
T ss_pred EEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEE
Confidence 3333456555677888898999999999999999999999999999999999999999986544
No 120
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=51.39 E-value=3.4e+02 Score=29.88 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=29.8
Q ss_pred hHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhhee
Q 014782 206 SFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLA 248 (419)
Q Consensus 206 ~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~ 248 (419)
+-+.++..+.|+-.+.++. .+.+|.+...+.+.+..++|.+.+
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 3456778889999998888 666665445566666667776644
No 121
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=51.31 E-value=84 Score=24.97 Aligned_cols=37 Identities=8% Similarity=-0.007 Sum_probs=29.6
Q ss_pred HHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecc
Q 014782 215 EPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVT 251 (419)
Q Consensus 215 ~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~ 251 (419)
..+...+..+ +-|.++++.+|+|..++++|+.++..+
T Consensus 68 yI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 68 YIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 3444555666 779999999999999999999887654
No 122
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=50.97 E-value=1.7e+02 Score=27.74 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeeccccc
Q 014782 181 ALLGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEVS 254 (419)
Q Consensus 181 ~~~~~~l~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~~ 254 (419)
..+..++...++..+...-.+.-.+..+..+...-=-.+.++++ ++.+.++-...-+.++++.|+.+=..++.+
T Consensus 262 y~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~n 336 (367)
T KOG1582|consen 262 YAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRN 336 (367)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCC
Confidence 33344444444433322222334555556666666667889999 999999999999999999999987665543
No 123
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.24 E-value=28 Score=32.78 Aligned_cols=118 Identities=17% Similarity=0.190 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHh-Cc----CCCCCC-CHHHHHHHHHHHHHHHHHHHHhhhHhc
Q 014782 129 IVFNIYNKKALNV-FPFPWLLASFQLFAGSVWMLVLWSL-KL----QPCPKI-SKPFIIALLGPALFHTIGHISACVSFS 201 (419)
Q Consensus 129 ~~~~~~~K~~l~~-~~~P~~l~~~r~~~~~~~l~~~~~~-~~----~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~al~ 201 (419)
....++.|..+.. -+--|.+++..-+.+.++.++.... +- ...++. ..+.|..+.+.|++.+..++...+=.+
T Consensus 198 Alnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK 277 (347)
T KOG1442|consen 198 ALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIK 277 (347)
T ss_pred HHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEE
Confidence 3344566644432 2223788888888888776665432 21 111222 345566666667776655555555555
Q ss_pred ccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhh
Q 014782 202 KVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCS 246 (419)
Q Consensus 202 ~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~ 246 (419)
.+++-+..+-....-.--.+++. +++|.-+...|-+.+++++|-.
T Consensus 278 ~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~ 323 (347)
T KOG1442|consen 278 VTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSL 323 (347)
T ss_pred ecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhH
Confidence 56555555555555566677888 8999888888877666655544
No 124
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=48.56 E-value=1.4e+02 Score=23.85 Aligned_cols=52 Identities=15% Similarity=0.244 Sum_probs=34.7
Q ss_pred hhHhcccchhHHHHHHH-hHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhhee
Q 014782 197 CVSFSKVAVSFTHVIKS-AEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLA 248 (419)
Q Consensus 197 ~~al~~~~~~~~~li~~-~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~ 248 (419)
=+|.+.-+.+.--+++- .+...-+.++. ++||++++....|.++.++++.++
T Consensus 53 RiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 53 RIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred hhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 33444444444444433 23334456777 999999999999999998888765
No 125
>PRK10666 ammonium transporter; Provisional
Probab=47.82 E-value=3.2e+02 Score=27.78 Aligned_cols=81 Identities=12% Similarity=-0.096 Sum_probs=38.8
Q ss_pred HhCCccChhHHHHHHHHHhhhheee-cccccccHHhHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHH
Q 014782 225 FLGDIYPLKVWLSILPIVLGCSLAA-VTEVSFNFGGLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFY 303 (419)
Q Consensus 225 ~l~er~~~~~~~~v~l~~~Gv~l~~-~~~~~~~~~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~ 303 (419)
+.+.|++......-+ +.|.+-++ ..+.-..+..++..+++++..-....+.|+.++-++..+...+=....++|.+.
T Consensus 273 ~~~gk~~~~~~~nG~--LaGLVaITa~a~~v~p~~A~iiG~vag~v~~~~~~~l~~~~~iDD~~~a~~vHgv~Gi~G~l~ 350 (428)
T PRK10666 273 ALRGKPSLLGACSGA--IAGLVGVTPACGYVGVGGALIIGVVAGLAGLWGVTMLKRWLRVDDPCDVFGVHGVCGIVGCIL 350 (428)
T ss_pred HHhCCCCHHHHHHHH--hhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCccHhhhHhHHHHHHH
Confidence 455666655443222 23333222 222223345566666666555443333454334344555555555566666655
Q ss_pred HHHH
Q 014782 304 LFPV 307 (419)
Q Consensus 304 l~~~ 307 (419)
...+
T Consensus 351 ~glf 354 (428)
T PRK10666 351 TGIF 354 (428)
T ss_pred HHHh
Confidence 5444
No 126
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=47.77 E-value=93 Score=24.18 Aligned_cols=65 Identities=18% Similarity=0.123 Sum_probs=33.1
Q ss_pred HHHhhccChhHHHHHHHHHHHHHHHHHHHh---hccc-ccchhhhhHHHHHHHHHHHHhhhcccccccc
Q 014782 352 YQALDDISPLTFSVGNTMKRVVVIVASILV---FRNP-VRPLNALGSAIAIFGTFLYSQATAKKKVEGE 416 (419)
Q Consensus 352 ~~~l~~~sa~~~sv~~~l~~v~~~il~~l~---fge~-ls~~~~iG~~lil~Gv~l~~~~~~~~~~~~~ 416 (419)
.++++++.-.-.-..-.+.-++++++|.+. -++. +-...|.|++.=+++..++....+|.++..|
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~~~e 90 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKKYGE 90 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhhcCc
Confidence 345666543222223233445555555442 3322 3334588887777777777655554444333
No 127
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=47.34 E-value=15 Score=24.11 Aligned_cols=8 Identities=25% Similarity=0.658 Sum_probs=4.1
Q ss_pred HHHHHHHh
Q 014782 399 FGTFLYSQ 406 (419)
Q Consensus 399 ~Gv~l~~~ 406 (419)
.|..+|..
T Consensus 21 iGl~IyQk 28 (49)
T PF11044_consen 21 IGLSIYQK 28 (49)
T ss_pred HHHHHHHH
Confidence 44555653
No 128
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=43.26 E-value=82 Score=26.65 Aligned_cols=26 Identities=12% Similarity=0.066 Sum_probs=15.0
Q ss_pred hccChhHHHHHHHHHHHHHHHHHHHh
Q 014782 356 DDISPLTFSVGNTMKRVVVIVASILV 381 (419)
Q Consensus 356 ~~~sa~~~sv~~~l~~v~~~il~~l~ 381 (419)
..-+.+..+.+.|+-|.++++++.++
T Consensus 70 ~EkslL~sA~LvYi~PL~~l~v~~~L 95 (150)
T COG3086 70 EEKSLLKSALLVYIFPLVGLFLGAIL 95 (150)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666555544
No 129
>PF08627 CRT-like: CRT-like; InterPro: IPR013936 This region is found in proteins related to Plasmodium falciparum chloroquine resistance transporter (CRT).
Probab=42.06 E-value=58 Score=26.82 Aligned_cols=43 Identities=16% Similarity=0.368 Sum_probs=32.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHH
Q 014782 111 PNKTLKLALVFGFWYFQNIVFNIYNKKALNVF-PFPWLLASFQL 153 (419)
Q Consensus 111 ~~~~l~~~~~~~~w~~~~~~~~~~~K~~l~~~-~~P~~l~~~r~ 153 (419)
.++.+.+++++++..+.+....++-|.+...+ +||++++-+--
T Consensus 52 ~ke~~~L~v~~vv~V~s~v~N~VL~K~~~~~m~NY~fFL~QlTt 95 (130)
T PF08627_consen 52 SKENFKLLVYVVVYVVSGVINRVLYKKMTNPMKNYPFFLNQLTT 95 (130)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhcc
Confidence 45667888888888777888888888888775 47877765533
No 130
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=40.33 E-value=29 Score=26.50 Aligned_cols=29 Identities=24% Similarity=0.236 Sum_probs=22.5
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhccccc
Q 014782 385 PVRPLNALGSAIAIFGTFLYSQATAKKKV 413 (419)
Q Consensus 385 ~ls~~~~iG~~lil~Gv~l~~~~~~~~~~ 413 (419)
..++..++|.+++++|..+|..+..+.+.
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~Pev 32 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRPEV 32 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCcch
Confidence 46788999999999999999865554433
No 131
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=38.75 E-value=66 Score=26.70 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=14.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHh
Q 014782 359 SPLTFSVGNTMKRVVVIVASILV 381 (419)
Q Consensus 359 sa~~~sv~~~l~~v~~~il~~l~ 381 (419)
.....+.+.|+-|++.++++.++
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667777776666544
No 132
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=38.51 E-value=70 Score=25.38 Aligned_cols=46 Identities=11% Similarity=0.036 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhh
Q 014782 362 TFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQA 407 (419)
Q Consensus 362 ~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~ 407 (419)
.++-++-+-.+.+.+..+++=|.+++.+.++|.++.+.|+.+..+.
T Consensus 60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 3455666778888999999999999999999999999998766554
No 133
>PRK10655 potE putrescine transporter; Provisional
Probab=38.26 E-value=4.3e+02 Score=26.52 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=16.4
Q ss_pred hhhhhHHHHHHHHHHHHhhhccc
Q 014782 389 LNALGSAIAIFGTFLYSQATAKK 411 (419)
Q Consensus 389 ~~~iG~~lil~Gv~l~~~~~~~~ 411 (419)
....|..+++.|..+|-..++|.
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~ 431 (438)
T PRK10655 409 AMLYGSIVTFLGWTLYGLISPRF 431 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34668888889988886655443
No 134
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=35.45 E-value=4.2e+02 Score=25.64 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=41.5
Q ss_pred HHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhhee
Q 014782 194 ISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLA 248 (419)
Q Consensus 194 ~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~ 248 (419)
.+-+.=+..+++-+.++..--.-+.+.+++. +++++++...|+|..++..|+.+-
T Consensus 258 ~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 258 FSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 3334444555555555555566678889999 999999999999999999999875
No 135
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=33.66 E-value=29 Score=23.36 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHhhhccccccc
Q 014782 393 GSAIAIFGTFLYSQATAKKKVEG 415 (419)
Q Consensus 393 G~~lil~Gv~l~~~~~~~~~~~~ 415 (419)
-+.++++|+++|.+.++++++-+
T Consensus 18 ~~~~~Figiv~wa~~p~~k~~f~ 40 (48)
T cd01324 18 YLALFFLGVVVWAFRPGRKKAFD 40 (48)
T ss_pred HHHHHHHHHHHHHhCCCcchhHH
Confidence 35677889999998876655433
No 136
>PRK10712 PTS system fructose-specific transporter subunits IIBC; Provisional
Probab=33.02 E-value=6.1e+02 Score=26.80 Aligned_cols=59 Identities=19% Similarity=0.148 Sum_probs=35.2
Q ss_pred HHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecccccccHHhHHHHHHHHHHHHHHHHHHHhh
Q 014782 210 VIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTEVSFNFGGLWGAMISNIGFVLRNIYSKKS 280 (419)
Q Consensus 210 li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~l~~a~~~v~~k~~ 280 (419)
.+..+.|++...++| +-++ + |+..+++|-.+.... -.|++=++++.+.-+.-..+.||.
T Consensus 277 ~~~lmvpvla~yia~sia~r-p------glapg~i~g~~a~~~-----~~GFlG~Ilag~lagyv~~~l~K~ 336 (563)
T PRK10712 277 AFALMVPVLAGYIAFSIADR-P------GLTPGLIGGMLAVST-----GSGFIGGIIAGFLAGYVAKLISTK 336 (563)
T ss_pred HHHHHHHHHHHHHHHHhcCC-c------cchHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHHHHHHHh
Confidence 445567999999998 6443 3 556666666554322 146666666666666444445554
No 137
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=31.51 E-value=70 Score=25.51 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHH
Q 014782 365 VGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFL 403 (419)
Q Consensus 365 v~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l 403 (419)
+.+.+.-+++.+.|..+-.|......++|..++++|+.+
T Consensus 84 v~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 84 VTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred ecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence 445566778888887665566677899999999999865
No 138
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=31.24 E-value=4.4e+02 Score=24.64 Aligned_cols=69 Identities=9% Similarity=0.125 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH---HhC---C--ccChhHHHHHHHHHhhhheee
Q 014782 181 ALLGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS---FLG---D--IYPLKVWLSILPIVLGCSLAA 249 (419)
Q Consensus 181 ~~~~~~l~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~---~l~---e--r~~~~~~~~v~l~~~Gv~l~~ 249 (419)
.-++.|.+.+.++.+..-..+.+..+...++-++.-+.+--..- +++ | +-++..++|++++++|..+..
T Consensus 57 ~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~ 133 (254)
T PF07857_consen 57 WAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFS 133 (254)
T ss_pred HHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHhee
Confidence 34566788899999999999999999999998876555554432 343 2 345678899999999988664
No 139
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.73 E-value=2.7e+02 Score=21.94 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=25.4
Q ss_pred HHHHH-HhCCccChhHHHHHHHHHhhhheee
Q 014782 220 VVFSS-FLGDIYPLKVWLSILPIVLGCSLAA 249 (419)
Q Consensus 220 ~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~ 249 (419)
..++. .+||.+++..+.|..++.+|+.++.
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 34667 8999999999999999999988654
No 140
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=29.10 E-value=6e+02 Score=25.51 Aligned_cols=40 Identities=10% Similarity=0.008 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhh-cccccchhhhhHHHHHHHHHHHHhhhc
Q 014782 369 MKRVVVIVASILVF-RNPVRPLNALGSAIAIFGTFLYSQATA 409 (419)
Q Consensus 369 l~~v~~~il~~l~f-ge~ls~~~~iG~~lil~Gv~l~~~~~~ 409 (419)
..++++++...++. .... .....+.++++.|..+|...++
T Consensus 389 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~y~~~~~ 429 (445)
T PRK10644 389 AVTLIAFVYCIWAVVGSGA-KEVMWSFVTLMVITAFYALNYN 429 (445)
T ss_pred HHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455544443332 2221 1233444445666666654433
No 141
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=28.95 E-value=7.5e+02 Score=26.54 Aligned_cols=17 Identities=18% Similarity=0.163 Sum_probs=12.3
Q ss_pred HHhHHHHHHHHHH-HhCC
Q 014782 212 KSAEPVFAVVFSS-FLGD 228 (419)
Q Consensus 212 ~~~~Pi~~~lls~-~l~e 228 (419)
....|++.+..++ +-++
T Consensus 344 ~~~~pvl~a~iA~sia~k 361 (631)
T PRK09765 344 TLMVPVLAAYTAYSLADK 361 (631)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 4566888888888 6543
No 142
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=28.76 E-value=5.2e+02 Score=24.67 Aligned_cols=40 Identities=18% Similarity=0.385 Sum_probs=31.7
Q ss_pred HHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheee
Q 014782 210 VIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAA 249 (419)
Q Consensus 210 li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~ 249 (419)
+...+-=.+..+++. .++..+++..|+|..+.++|..+..
T Consensus 273 lvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 273 LVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred EeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 334444567888888 8899999999999999999988654
No 143
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=27.51 E-value=5.6e+02 Score=24.65 Aligned_cols=50 Identities=22% Similarity=0.194 Sum_probs=36.3
Q ss_pred hHHHHHHHHHhhhheeecccccccHHhHHHHHHHHHHHHHHHHHHHhhcC
Q 014782 233 KVWLSILPIVLGCSLAAVTEVSFNFGGLWGAMISNIGFVLRNIYSKKSLG 282 (419)
Q Consensus 233 ~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~l~~a~~~v~~k~~~~ 282 (419)
....++...++|.+++......++++=.++++++++..-....+....+.
T Consensus 19 Tl~aai~Pv~~G~a~A~~~~~~f~~~~~ll~Li~~~~iq~~vN~~NdY~D 68 (303)
T COG1575 19 TLPAAIAPVIVGTALAFWYGKSFNLLVALLALIAAILLQILVNLANDYFD 68 (303)
T ss_pred chHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34578888999999887766677777777888887777766666555443
No 144
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=27.42 E-value=7.2e+02 Score=25.81 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=33.8
Q ss_pred hhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeeccc
Q 014782 205 VSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTE 252 (419)
Q Consensus 205 ~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~ 252 (419)
.+.+.-+.+.+|++-..++= ++|.| +.-.+|.++..+|-.+....+
T Consensus 67 ~~~y~slVY~t~i~GG~laDr~LG~~--~tI~lGail~~iGh~~L~~~~ 113 (498)
T COG3104 67 FSAYGSLVYLTPIIGGWLADRVLGTR--RTIVLGAILMAIGHLVLAISS 113 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchh--HHHHHHHHHHHHHHHHHhccc
Confidence 34555666777888888888 88866 456788888999988766553
No 145
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=26.20 E-value=57 Score=19.66 Aligned_cols=14 Identities=29% Similarity=0.247 Sum_probs=7.5
Q ss_pred cchhhhhHHHHHHH
Q 014782 387 RPLNALGSAIAIFG 400 (419)
Q Consensus 387 s~~~~iG~~lil~G 400 (419)
....++|.+++.++
T Consensus 11 ~~~~~~G~~l~~~~ 24 (34)
T TIGR01167 11 SLLLLLGLLLLGLG 24 (34)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566777444443
No 146
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=25.18 E-value=88 Score=25.74 Aligned_cols=19 Identities=11% Similarity=0.232 Sum_probs=8.5
Q ss_pred cccccchhhhhHHHHHHHH
Q 014782 383 RNPVRPLNALGSAIAIFGT 401 (419)
Q Consensus 383 ge~ls~~~~iG~~lil~Gv 401 (419)
+++.+...++|-++.-.|+
T Consensus 74 n~~~si~~~~G~vlLs~GL 92 (129)
T PF15099_consen 74 NSHGSIISIFGPVLLSLGL 92 (129)
T ss_pred cCCcchhhhehHHHHHHHH
Confidence 3344444444544444443
No 147
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=25.15 E-value=1.9e+02 Score=19.97 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhhhheeecccccccHHhHHHHHHHHHHHHHHHHHHHhhc
Q 014782 233 KVWLSILPIVLGCSLAAVTEVSFNFGGLWGAMISNIGFVLRNIYSKKSL 281 (419)
Q Consensus 233 ~~~~~v~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~l~~a~~~v~~k~~~ 281 (419)
...+|..+.++|+++...++. |.+..+++....|...-..||.+
T Consensus 4 v~v~G~~lv~~Gii~~~lPGp-----G~l~i~~GL~iLa~ef~wArr~l 47 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPGP-----GLLVIFLGLAILATEFPWARRLL 47 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCCC-----cHHHHHHHHHHHHHhhHHHHHHH
Confidence 356788899999998776653 66777777777777777777764
No 148
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=25.04 E-value=4.8e+02 Score=23.07 Aligned_cols=36 Identities=8% Similarity=0.030 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHH
Q 014782 364 SVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIF 399 (419)
Q Consensus 364 sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~ 399 (419)
++...+..++.++.-+.++|-+++...++|.+.+++
T Consensus 60 aii~l~~dv~i~l~~~~~~~~~l~l~~iaall~~iG 95 (189)
T PF02355_consen 60 AIIALIHDVLITLGIFSLFGIELTLPSIAALLTIIG 95 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-EE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHH
Confidence 344445555556666778899999999998877544
No 149
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=23.85 E-value=6e+02 Score=23.74 Aligned_cols=15 Identities=7% Similarity=0.337 Sum_probs=6.4
Q ss_pred HHHHHHhhcccccch
Q 014782 375 IVASILVFRNPVRPL 389 (419)
Q Consensus 375 ~il~~l~fge~ls~~ 389 (419)
.+.++...+..++..
T Consensus 148 ~~~~~~~~~~~~~~~ 162 (285)
T PRK12872 148 LILGVYYYQLTIFSL 162 (285)
T ss_pred HHHHHHhcccccchH
Confidence 334444444434443
No 150
>PRK09776 putative diguanylate cyclase; Provisional
Probab=23.82 E-value=1.1e+03 Score=26.73 Aligned_cols=23 Identities=22% Similarity=0.169 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhc
Q 014782 259 GLWGAMISNIGFVLRNIYSKKSL 281 (419)
Q Consensus 259 G~~~~l~s~l~~a~~~v~~k~~~ 281 (419)
..++++++.+...+...+.++..
T Consensus 71 ~~~~~~~~~~~~~~~~~ll~~~~ 93 (1092)
T PRK09776 71 NLTWTTINLVEAVVGAVLLRKLL 93 (1092)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555554444444555543
No 151
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=22.50 E-value=7.9e+02 Score=24.62 Aligned_cols=22 Identities=9% Similarity=0.058 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHhhhccccc
Q 014782 392 LGSAIAIFGTFLYSQATAKKKV 413 (419)
Q Consensus 392 iG~~lil~Gv~l~~~~~~~~~~ 413 (419)
.|.++++.|+.+|-..++++++
T Consensus 419 ~~~~~~~~g~~~y~~~~~~~~~ 440 (445)
T PRK11357 419 CAVIVIATGLPAYAFWAKRSRQ 440 (445)
T ss_pred HHHHHHHHhhhHHhheechhhh
Confidence 5788888898888766655433
No 152
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=22.30 E-value=5.6e+02 Score=22.83 Aligned_cols=48 Identities=6% Similarity=0.126 Sum_probs=28.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 014782 258 GGLWGAMISNIGFVLRNIYSKKSLGDFKEVNGLNLYGWITIISLFYLFPVAIF 310 (419)
Q Consensus 258 ~G~~~~l~s~l~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~ 310 (419)
...++.+.+-++-|...++..- +-+...++.-|.+.+..++++..++.
T Consensus 30 ~s~l~Li~~f~~vA~l~~ll~a-----~Fla~~qIiVYvGAI~VLflFvIMll 77 (198)
T PRK06638 30 HSALFLILTFLSIAGLYFLLGA-----EFLGVVQIIVYVGAVMVLFLFVVMML 77 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHhch-----HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555555555566655554332 12456677888877777777766554
No 153
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=22.28 E-value=5.7e+02 Score=22.86 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 014782 145 PWLLASFQLFAGSVWMLVL 163 (419)
Q Consensus 145 P~~l~~~r~~~~~~~l~~~ 163 (419)
......+|...+.+++..-
T Consensus 65 ~~~~~~~~l~lGv~ll~~a 83 (214)
T PF11139_consen 65 SPVVGWLQLVLGVLLLLLA 83 (214)
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 5667778888887766543
No 154
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=22.28 E-value=1.1e+02 Score=25.80 Aligned_cols=37 Identities=11% Similarity=0.182 Sum_probs=21.2
Q ss_pred HHHHHHHhHHHHHHHHHHHhCCccChhHHHHHHHHHh
Q 014782 207 FTHVIKSAEPVFAVVFSSFLGDIYPLKVWLSILPIVL 243 (419)
Q Consensus 207 ~~~li~~~~Pi~~~lls~~l~er~~~~~~~~v~l~~~ 243 (419)
..+++.+..|+++++++.++-+++.....+.++.++.
T Consensus 76 ~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~~l 112 (150)
T COG3086 76 KSALLVYIFPLVGLFLGAILAQYLFFSELIVIFGAFL 112 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3456677778888888774444444444444433333
No 155
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=22.23 E-value=70 Score=21.40 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHhhhcccc
Q 014782 392 LGSAIAIFGTFLYSQATAKKK 412 (419)
Q Consensus 392 iG~~lil~Gv~l~~~~~~~~~ 412 (419)
+-..+++.|++++.+.+++++
T Consensus 16 v~~~~~F~gi~~w~~~~~~k~ 36 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAYRPRNKK 36 (49)
T ss_pred HHHHHHHHHHHHHHHcccchh
Confidence 334455677777777665443
No 156
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=21.54 E-value=9e+02 Score=24.90 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=28.6
Q ss_pred HHHHHHHHH-HhCCccChhHH--HHHHHHHhhhheeecccccccHHhHHHHHHHHHHHHHHHHHH
Q 014782 216 PVFAVVFSS-FLGDIYPLKVW--LSILPIVLGCSLAAVTEVSFNFGGLWGAMISNIGFVLRNIYS 277 (419)
Q Consensus 216 Pi~~~lls~-~l~er~~~~~~--~~v~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~l~~a~~~v~~ 277 (419)
....++..+ .+.+|+.+++. .+.++.++|-++.-....+.....+++.+++.+..+..+.+.
T Consensus 284 ~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~ 348 (467)
T COG2211 284 GLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLP 348 (467)
T ss_pred HHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhcccccc
Confidence 333335666 77777776665 333334444333222222223344444455555444444433
No 157
>COG1971 Predicted membrane protein [Function unknown]
Probab=21.45 E-value=2e+02 Score=25.67 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHH-HHHHHHH
Q 014782 360 PLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAI-AIFGTFL 403 (419)
Q Consensus 360 a~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~l-il~Gv~l 403 (419)
+...+++..+.|.++...+.++=+-.-.+-+|+|.++ ++.|...
T Consensus 40 a~~fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~m 84 (190)
T COG1971 40 ALIFGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKM 84 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777777777766544444667666554 4556543
No 158
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=21.05 E-value=5.9e+02 Score=22.59 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=27.2
Q ss_pred HhCCccChhHHHHHHHHHhhhheeecccccc----cHHhHHHHHH
Q 014782 225 FLGDIYPLKVWLSILPIVLGCSLAAVTEVSF----NFGGLWGAMI 265 (419)
Q Consensus 225 ~l~er~~~~~~~~v~l~~~Gv~l~~~~~~~~----~~~G~~~~l~ 265 (419)
-++++-.+....|+++.++|+.....+-.+. ...|..+.+.
T Consensus 14 ~l~~~w~~~l~~Gv~lii~Gl~~l~~P~~s~~~l~~~vG~~lli~ 58 (185)
T COG3247 14 MLKKPWWWVLLLGVLLIILGLLALFNPAISTVALVYVVGILLLIS 58 (185)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4566667788899999999998876554332 2355554443
No 159
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.59 E-value=1.8e+02 Score=28.62 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhHhcccchhHHHHHHHhH
Q 014782 188 FHTIGHISACVSFSKVAVSFTHVIKSAE 215 (419)
Q Consensus 188 ~~~~~~~~~~~al~~~~~~~~~li~~~~ 215 (419)
+..++..+.+.+.++..++.+.+|..+.
T Consensus 260 Lqli~lvl~Yfsvq~p~~a~A~iI~~lc 287 (452)
T KOG3817|consen 260 LQLIGLVLAYFSVQHPSAAIAAIIMVLC 287 (452)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445666777888888888876665543
No 160
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=20.53 E-value=1.3e+02 Score=19.18 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHHHhhhcccc
Q 014782 391 ALGSAIAIFGTFLYSQATAKKK 412 (419)
Q Consensus 391 ~iG~~lil~Gv~l~~~~~~~~~ 412 (419)
++|++++++-+..|....+|.+
T Consensus 13 ~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 13 VVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred HHHHHHHHHHHHHHHHHHcccc
Confidence 4688888888888887665544
No 161
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=20.42 E-value=9.6e+02 Score=24.80 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=13.5
Q ss_pred HhCCcc-ChhH--HHHHHHHHhhhhee
Q 014782 225 FLGDIY-PLKV--WLSILPIVLGCSLA 248 (419)
Q Consensus 225 ~l~er~-~~~~--~~~v~l~~~Gv~l~ 248 (419)
.+.||+ .+++ .+|.++..+|..+.
T Consensus 67 ~LaDRilGrrr~iliG~il~~lg~lll 93 (493)
T PRK15462 67 FLADKVLGNRMAVMLGALLMAIGHVVL 93 (493)
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHH
Confidence 445666 6655 45555666665443
No 162
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=20.14 E-value=1.1e+02 Score=20.05 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=16.0
Q ss_pred hcccccchhhhhHHHHHH-HHHHHHhhhcc
Q 014782 382 FRNPVRPLNALGSAIAIF-GTFLYSQATAK 410 (419)
Q Consensus 382 fge~ls~~~~iG~~lil~-Gv~l~~~~~~~ 410 (419)
|+........+.++.+++ +++++.+..+|
T Consensus 7 F~s~vGL~Sl~vI~~~igm~~~~~~~F~~k 36 (42)
T PF11346_consen 7 FGSDVGLMSLIVIVFTIGMGVFFIRYFIRK 36 (42)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777776666665443 33444444333
No 163
>PRK02935 hypothetical protein; Provisional
Probab=20.13 E-value=2.9e+02 Score=21.99 Aligned_cols=20 Identities=25% Similarity=0.167 Sum_probs=13.5
Q ss_pred chhhhhHHHHHHHHHHHHhh
Q 014782 388 PLNALGSAIAIFGTFLYSQA 407 (419)
Q Consensus 388 ~~~~iG~~lil~Gv~l~~~~ 407 (419)
...++|.+.++++.++|-+.
T Consensus 42 ifm~~G~l~~l~S~vvYFwi 61 (110)
T PRK02935 42 IFMLLGFLAVIASTVVYFWI 61 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44567777777777777654
No 164
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=20.11 E-value=1e+03 Score=24.86 Aligned_cols=24 Identities=8% Similarity=-0.139 Sum_probs=11.1
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHh
Q 014782 358 ISPLTFSVGNTMKRVVVIVASILV 381 (419)
Q Consensus 358 ~sa~~~sv~~~l~~v~~~il~~l~ 381 (419)
+-+....+.....++-+.+.|.+.
T Consensus 344 v~si~~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 344 VFSIYQMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555555555443
Done!