Query 014782
Match_columns 419
No_of_seqs 285 out of 2028
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 17:43:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.4 6.2E-07 2.1E-11 74.4 7.3 63 346-408 42-105 (137)
2 3b5d_A Multidrug transporter E 98.3 4E-06 1.4E-10 67.0 10.0 70 183-252 34-105 (110)
3 2i68_A Protein EMRE; transmemb 98.2 2.4E-06 8.1E-11 70.9 7.0 69 183-251 34-104 (137)
4 3b5d_A Multidrug transporter E 98.0 2.8E-05 9.6E-10 62.0 9.4 62 347-408 43-105 (110)
5 3l1l_A Arginine/agmatine antip 56.6 80 0.0027 30.1 11.3 23 389-411 409-431 (445)
6 2l2t_A Receptor tyrosine-prote 42.4 20 0.00067 22.8 2.7 14 395-408 24-37 (44)
7 2ks1_B Epidermal growth factor 35.6 29 0.00099 22.0 2.7 9 399-407 29-37 (44)
8 1u7g_A Probable ammonium trans 18.0 6.2E+02 0.021 23.9 17.9 89 214-305 240-330 (385)
9 2jwa_A Receptor tyrosine-prote 17.1 1E+02 0.0035 19.5 2.6 7 401-407 31-37 (44)
10 2h3o_A MERF; membrane protein, 12.2 63 0.0021 22.0 0.7 42 369-410 12-55 (61)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.39 E-value=6.2e-07 Score=74.41 Aligned_cols=63 Identities=13% Similarity=-0.004 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhccChhHHHHH-HHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhh
Q 014782 346 LYNQSSYQALDDISPLTFSVG-NTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQAT 408 (419)
Q Consensus 346 ~~~~~~~~~l~~~sa~~~sv~-~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~ 408 (419)
+..+++..++++.++..+..+ ..+.|++++++|+++|||++++.+++|++++++|+++.+..+
T Consensus 42 ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344566678999999988777 899999999999999999999999999999999999988654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.30 E-value=4e-06 Score=66.96 Aligned_cols=70 Identities=13% Similarity=0.215 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhhhHhcccchhHHHHH-HHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeeccc
Q 014782 183 LGPALFHTIGHISACVSFSKVAVSFTHVI-KSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVTE 252 (419)
Q Consensus 183 ~~~~l~~~~~~~~~~~al~~~~~~~~~li-~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~~ 252 (419)
+...+++..+..+...++++.|.+.+..+ .++.|++++++++ ++||++++.+++|+.++++|+.++...+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44455677788899999999999999888 8999999999999 9999999999999999999999876543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.21 E-value=2.4e-06 Score=70.89 Aligned_cols=69 Identities=13% Similarity=0.217 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHhhhHhcccchhHHHHH-HHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhhheeecc
Q 014782 183 LGPALFHTIGHISACVSFSKVAVSFTHVI-KSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAAVT 251 (419)
Q Consensus 183 ~~~~l~~~~~~~~~~~al~~~~~~~~~li-~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~~~ 251 (419)
+...+++.++.++.+.++++++++.+..+ .++.|++++++++ ++||++++.+++|++++++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44455677888999999999999999888 8999999999999 999999999999999999999987643
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.01 E-value=2.8e-05 Score=62.02 Aligned_cols=62 Identities=13% Similarity=0.002 Sum_probs=53.7
Q ss_pred HHHHHHHHhhccChhHHHHH-HHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHHHHHhhh
Q 014782 347 YNQSSYQALDDISPLTFSVG-NTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTFLYSQAT 408 (419)
Q Consensus 347 ~~~~~~~~l~~~sa~~~sv~-~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~l~~~~~ 408 (419)
..++...++++.+..++..+ ..+.++.+.++|+++|||+++..+++|+++++.|++..+..+
T Consensus 43 ~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 43 SFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 33445567899988888766 899999999999999999999999999999999999987653
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=56.56 E-value=80 Score=30.10 Aligned_cols=23 Identities=9% Similarity=-0.055 Sum_probs=16.6
Q ss_pred hhhhhHHHHHHHHHHHHhhhccc
Q 014782 389 LNALGSAIAIFGTFLYSQATAKK 411 (419)
Q Consensus 389 ~~~iG~~lil~Gv~l~~~~~~~~ 411 (419)
..+.|.++++.|+.+|...++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 45568888888988887665543
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=42.41 E-value=20 Score=22.84 Aligned_cols=14 Identities=14% Similarity=0.138 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHhhh
Q 014782 395 AIAIFGTFLYSQAT 408 (419)
Q Consensus 395 ~lil~Gv~l~~~~~ 408 (419)
+++.+++++|.+.+
T Consensus 24 ~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 24 VIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhh
Confidence 33344444454443
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=35.57 E-value=29 Score=22.04 Aligned_cols=9 Identities=22% Similarity=0.423 Sum_probs=3.6
Q ss_pred HHHHHHHhh
Q 014782 399 FGTFLYSQA 407 (419)
Q Consensus 399 ~Gv~l~~~~ 407 (419)
+++++|.+.
T Consensus 29 ~~~~~~~RR 37 (44)
T 2ks1_B 29 LGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhhh
Confidence 333444433
No 8
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=17.99 E-value=6.2e+02 Score=23.89 Aligned_cols=89 Identities=9% Similarity=-0.092 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHhCCccChhHHH-HHHHHHhhhheeecccccccHHhHHHHHHHHHHHHHHHH-HHHhhcCCCCCCChhh
Q 014782 214 AEPVFAVVFSSFLGDIYPLKVWL-SILPIVLGCSLAAVTEVSFNFGGLWGAMISNIGFVLRNI-YSKKSLGDFKEVNGLN 291 (419)
Q Consensus 214 ~~Pi~~~lls~~l~er~~~~~~~-~v~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~l~~a~~~v-~~k~~~~~~~~~~~~~ 291 (419)
..-+-.++++++.++|++..... |.+.+++++ -...+.-..+..++..+++.+..-.... +.+|+ +-++..+...
T Consensus 240 ag~l~~~~~~~~~~gk~~~~~~~nG~lAGLVaI--Ta~~~~v~p~~A~iiG~iag~i~~~~~~~l~~~l-~iDD~l~a~~ 316 (385)
T 1u7g_A 240 AAILGWIFGEWALRGLPSLLGACSGAIAGLVGV--TPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLL-RVDDPCDVFG 316 (385)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH--TTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-CSCCGGGHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHhhhhh--ccCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCCCCCCEe
Confidence 33444455555555677665432 222222222 2222222234455555655554443333 33343 4333344444
Q ss_pred HHHHHHHHHHHHHH
Q 014782 292 LYGWITIISLFYLF 305 (419)
Q Consensus 292 ~~~~~~~~~~i~l~ 305 (419)
+=....+.+.+...
T Consensus 317 vHgv~Gi~G~l~~g 330 (385)
T 1u7g_A 317 VHGVCGIVGCIMTG 330 (385)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ecccccHHHHHHHH
Confidence 44444445554443
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=17.12 E-value=1e+02 Score=19.45 Aligned_cols=7 Identities=0% Similarity=-0.259 Sum_probs=2.9
Q ss_pred HHHHHhh
Q 014782 401 TFLYSQA 407 (419)
Q Consensus 401 v~l~~~~ 407 (419)
+++|.++
T Consensus 31 ~~~~~RR 37 (44)
T 2jwa_A 31 FGILIKR 37 (44)
T ss_dssp HHHHHHH
T ss_pred HHhheeh
Confidence 3444433
No 10
>2h3o_A MERF; membrane protein, alpha-helix, bicelle; NMR {Morganella morganii} PDB: 2lj2_A
Probab=12.16 E-value=63 Score=21.99 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhcccccchh--hhhHHHHHHHHHHHHhhhcc
Q 014782 369 MKRVVVIVASILVFRNPVRPLN--ALGSAIAIFGTFLYSQATAK 410 (419)
Q Consensus 369 l~~v~~~il~~l~fge~ls~~~--~iG~~lil~Gv~l~~~~~~~ 410 (419)
..|++++++|..=+....++.. ++=+.-.+.|..+|...|++
T Consensus 12 ~tPvLvil~G~~Glsa~~~wLd~vl~P~l~~figl~~Y~~~r~~ 55 (61)
T 2h3o_A 12 FTPVLVILLGVVGLSALTGYLDYVLLPALAIFIGLTIYAIQRKR 55 (61)
T ss_dssp ----CHHHHHHHHHHHHHHHSSSSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455555555443333333322 11233334488888877655
Done!