Query 014782
Match_columns 419
No_of_seqs 285 out of 2028
Neff 8.7
Searched_HMMs 13730
Date Mon Mar 25 17:43:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014782.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014782hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 39.9 1.2E+02 0.0085 26.6 19.8 86 216-304 239-327 (383)
2 d1iwga8 f.35.1.1 (A:513-566,A: 24.1 1.5E+02 0.011 23.4 8.6 29 372-400 95-123 (222)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 10.8 96 0.007 15.5 2.2 19 258-276 3-21 (27)
4 d1iwga7 f.35.1.1 (A:7-37,A:331 10.1 3.5E+02 0.025 20.6 7.3 47 356-402 61-107 (199)
5 d1pv7a_ f.38.1.2 (A:) Lactose 6.0 5.9E+02 0.043 20.0 10.7 9 133-141 29-37 (417)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 5.9 2E+02 0.014 19.5 3.1 17 394-410 39-55 (100)
7 d1kqfb2 f.23.22.1 (B:246-290) 5.4 3E+02 0.022 15.8 3.2 28 381-408 7-35 (45)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.5 7.7E+02 0.056 19.4 7.3 59 183-245 6-65 (248)
9 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.9 3.3E+02 0.024 18.5 3.1 12 397-408 48-59 (107)
10 d2p7tc1 f.14.1.1 (C:86-119) Po 3.2 3.8E+02 0.028 13.8 2.0 14 232-245 2-15 (34)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=39.94 E-value=1.2e+02 Score=26.62 Aligned_cols=86 Identities=12% Similarity=0.013 Sum_probs=36.5
Q ss_pred HHHHHHHHH-HhCCccChhHHHHHHHHHhhhheee-cccccccHHhHHHHHHHH-HHHHHHHHHHHhhcCCCCCCChhhH
Q 014782 216 PVFAVVFSS-FLGDIYPLKVWLSILPIVLGCSLAA-VTEVSFNFGGLWGAMISN-IGFVLRNIYSKKSLGDFKEVNGLNL 292 (419)
Q Consensus 216 Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv~l~~-~~~~~~~~~G~~~~l~s~-l~~a~~~v~~k~~~~~~~~~~~~~~ 292 (419)
-.++.++.. +.++|.+......- ++.|.+-++ ..+.-..+...+...++. +|+-.+..+.+|+ +-++..+...+
T Consensus 239 ~~~~~~~~~~~~~~k~~~~~~~nG--~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~-~iDD~~~~~~v 315 (383)
T d1u7ga_ 239 AILGWIFGEWALRGLPSLLGACSG--AIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLL-RVDDPCDVFGV 315 (383)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHH--HHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-CSCCGGGHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHH--hhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhc-ccccccceEee
Confidence 334444444 56677776664432 223333222 222222233355554444 4444444444444 33333344444
Q ss_pred HHHHHHHHHHHH
Q 014782 293 YGWITIISLFYL 304 (419)
Q Consensus 293 ~~~~~~~~~i~l 304 (419)
=....+.+.+..
T Consensus 316 Hg~~Gi~G~l~~ 327 (383)
T d1u7ga_ 316 HGVCGIVGCIMT 327 (383)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHHHHH
Confidence 334444444443
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=24.08 E-value=1.5e+02 Score=23.37 Aligned_cols=29 Identities=10% Similarity=-0.148 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhcccccchhhhhHHHHHHH
Q 014782 372 VVVIVASILVFRNPVRPLNALGSAIAIFG 400 (419)
Q Consensus 372 v~~~il~~l~fge~ls~~~~iG~~lil~G 400 (419)
+.+.+.+..+.|.+++....+|.++.++.
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhh
Confidence 34556677788999999998888885543
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.80 E-value=96 Score=15.49 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=14.5
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 014782 258 GGLWGAMISNIGFVLRNIY 276 (419)
Q Consensus 258 ~G~~~~l~s~l~~a~~~v~ 276 (419)
.|.+.+-++.+.||.|.-+
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 5778888888888887544
No 4
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=10.06 E-value=3.5e+02 Score=20.56 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=31.5
Q ss_pred hccChhHHHHHHHHHHHHHHHHHHHhhcccccchhhhhHHHHHHHHH
Q 014782 356 DDISPLTFSVGNTMKRVVVIVASILVFRNPVRPLNALGSAIAIFGTF 402 (419)
Q Consensus 356 ~~~sa~~~sv~~~l~~v~~~il~~l~fge~ls~~~~iG~~lil~Gv~ 402 (419)
+..-+.........-.+...+....++|.+++.....+..++++...
T Consensus 61 rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~v 107 (199)
T d1iwga7 61 QNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLV 107 (199)
T ss_dssp CCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHH
T ss_pred hhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhc
Confidence 44444444455555556666666778899999988888887766544
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=6.04 E-value=5.9e+02 Score=19.96 Aligned_cols=9 Identities=0% Similarity=0.069 Sum_probs=4.0
Q ss_pred HHHHHHHhc
Q 014782 133 IYNKKALNV 141 (419)
Q Consensus 133 ~~~K~~l~~ 141 (419)
++..++.++
T Consensus 29 ~l~~~l~~~ 37 (417)
T d1pv7a_ 29 FFPIWLHDI 37 (417)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 444444444
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.86 E-value=2e+02 Score=19.49 Aligned_cols=17 Identities=18% Similarity=0.053 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhhhcc
Q 014782 394 SAIAIFGTFLYSQATAK 410 (419)
Q Consensus 394 ~~lil~Gv~l~~~~~~~ 410 (419)
..+++.|...|...|.+
T Consensus 39 I~~~V~~~l~~~~~~~r 55 (100)
T d3dtub2 39 ITIFVTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 33344555555544443
No 7
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=5.38 E-value=3e+02 Score=15.84 Aligned_cols=28 Identities=21% Similarity=0.462 Sum_probs=15.2
Q ss_pred hhcccccchhhhhHHHHHHHHHH-HHhhh
Q 014782 381 VFRNPVRPLNALGSAIAIFGTFL-YSQAT 408 (419)
Q Consensus 381 ~fge~ls~~~~iG~~lil~Gv~l-~~~~~ 408 (419)
+.....-+...+|++..+++.++ |....
T Consensus 7 lWKgv~Kpl~~~~~~~~~~~~~fHYv~vG 35 (45)
T d1kqfb2 7 LWKGALKPLAAAGFIATFAGLIFHYIGIG 35 (45)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhheeC
Confidence 34444556666777666665444 44433
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.47 E-value=7.7e+02 Score=19.40 Aligned_cols=59 Identities=7% Similarity=-0.093 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHhhhHhcccchhHHHHHHHhHHHHHHHHHH-HhCCccChhHHHHHHHHHhhh
Q 014782 183 LGPALFHTIGHISACVSFSKVAVSFTHVIKSAEPVFAVVFSS-FLGDIYPLKVWLSILPIVLGC 245 (419)
Q Consensus 183 ~~~~l~~~~~~~~~~~al~~~~~~~~~li~~~~Pi~~~lls~-~l~er~~~~~~~~v~l~~~Gv 245 (419)
++++++.++..++....+..-+...+. ..-+.+.++.+ ++.+|.-..|++-=.+++..+
T Consensus 6 ~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~ 65 (248)
T d2r6gf1 6 SVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVYPGMAGMGL 65 (248)
T ss_dssp HHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhhhHHHHHHH
Confidence 445666655555444444444433322 33455666667 888887777776544444333
No 9
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=3.87 E-value=3.3e+02 Score=18.49 Aligned_cols=12 Identities=8% Similarity=-0.061 Sum_probs=5.7
Q ss_pred HHHHHHHHHhhh
Q 014782 397 AIFGTFLYSQAT 408 (419)
Q Consensus 397 il~Gv~l~~~~~ 408 (419)
.+.|...|...+
T Consensus 48 ~V~~~~~~~~~~ 59 (107)
T d3ehbb2 48 FVCLLLLICIVR 59 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 344555555443
No 10
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=3.15 E-value=3.8e+02 Score=13.79 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHhhh
Q 014782 232 LKVWLSILPIVLGC 245 (419)
Q Consensus 232 ~~~~~~v~l~~~Gv 245 (419)
|-+.+++++++.|+
T Consensus 2 wgrcvavvvmvagi 15 (34)
T d2p7tc1 2 WGRCVAVVVMVAGI 15 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cceEEEEEEEEecc
Confidence 34556666666665
Done!