Query 014784
Match_columns 418
No_of_seqs 235 out of 2028
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 08:29:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02856 fumarylacetoacetase 100.0 2.1E-98 5E-103 762.4 41.1 416 3-418 5-424 (424)
2 TIGR01266 fum_ac_acetase fumar 100.0 5.9E-96 1E-100 743.6 38.2 411 5-417 1-415 (415)
3 KOG2843 Fumarylacetoacetase [C 100.0 1.8E-78 3.9E-83 574.1 20.1 412 4-417 1-417 (420)
4 COG0179 MhpD 2-keto-4-pentenoa 100.0 2.6E-55 5.6E-60 425.7 20.9 213 114-417 47-266 (266)
5 TIGR02303 HpaG-C-term 4-hydrox 100.0 2.9E-50 6.2E-55 388.0 22.2 212 109-415 26-244 (245)
6 KOG1535 Predicted fumarylaceto 100.0 1.8E-47 3.9E-52 348.6 18.0 185 116-359 2-194 (217)
7 PRK15203 4-hydroxyphenylacetat 100.0 1.3E-43 2.9E-48 366.1 20.9 190 134-416 12-206 (429)
8 PRK10691 hypothetical protein; 100.0 1.2E-42 2.7E-47 330.0 20.8 189 134-414 26-219 (219)
9 PRK15203 4-hydroxyphenylacetat 100.0 2.7E-42 5.8E-47 356.4 22.0 204 119-416 215-425 (429)
10 PRK12764 hypothetical protein; 100.0 2.4E-40 5.3E-45 347.4 21.3 194 134-417 31-230 (500)
11 PF01557 FAA_hydrolase: Fumary 100.0 4.1E-39 8.9E-44 305.1 14.4 207 131-414 6-218 (218)
12 TIGR02305 HpaG-N-term 4-hydrox 100.0 3.3E-38 7.2E-43 296.9 19.5 192 134-413 10-205 (205)
13 TIGR03220 catechol_dmpE 2-oxop 99.8 3.9E-20 8.5E-25 179.8 15.6 167 160-373 73-249 (255)
14 PRK11342 mhpD 2-keto-4-penteno 99.8 2.7E-18 5.9E-23 167.5 14.8 152 198-415 100-261 (262)
15 PF09298 FAA_hydrolase_N: Fuma 99.7 1E-16 2.3E-21 136.0 6.9 105 18-122 1-107 (107)
16 TIGR02312 HpaH 2-oxo-hepta-3-e 99.6 1.8E-14 4E-19 141.0 14.4 170 159-373 77-260 (267)
17 COG3970 Fumarylacetoacetate (F 99.5 5.8E-13 1.3E-17 129.0 13.4 182 161-417 171-357 (379)
18 TIGR03218 catechol_dmpH 4-oxal 99.2 2.5E-10 5.5E-15 111.7 15.9 146 198-374 104-258 (263)
19 COG3971 2-keto-4-pentenoate hy 98.9 1.1E-08 2.3E-13 98.3 9.8 147 199-376 102-258 (264)
20 PF11010 DUF2848: Protein of u 98.2 2.4E-05 5.2E-10 72.7 12.8 168 135-370 12-182 (194)
21 COG3802 GguC Uncharacterized p 98.1 3.8E-05 8.3E-10 73.7 12.0 82 162-270 144-227 (333)
22 PF10370 DUF2437: Domain of un 85.3 0.89 1.9E-05 33.2 2.8 26 20-47 1-26 (50)
23 PRK08582 hypothetical protein; 44.0 28 0.0006 30.9 3.6 65 340-407 1-72 (139)
24 TIGR00008 infA translation ini 43.6 38 0.00082 26.6 3.8 16 381-396 41-56 (68)
25 PRK12442 translation initiatio 42.4 37 0.00081 27.9 3.8 16 381-396 43-58 (87)
26 smart00652 eIF1a eukaryotic tr 37.1 58 0.0013 26.4 4.2 16 381-396 40-55 (83)
27 COG0361 InfA Translation initi 36.5 39 0.00085 27.0 3.0 15 382-396 44-58 (75)
28 TIGR03220 catechol_dmpE 2-oxop 34.2 46 0.00099 32.4 3.7 23 382-412 232-254 (255)
29 cd05793 S1_IF1A S1_IF1A: Trans 31.5 80 0.0017 25.2 4.1 16 381-396 35-50 (77)
30 cd05694 S1_Rrp5_repeat_hs2_sc2 31.0 67 0.0014 25.1 3.5 60 342-404 2-64 (74)
31 COG1096 Predicted RNA-binding 30.8 1.4E+02 0.0031 28.0 6.1 55 342-396 8-73 (188)
32 COG0776 HimA Bacterial nucleoi 29.3 45 0.00098 27.8 2.4 25 383-417 35-59 (94)
33 cd04454 S1_Rrp4_like S1_Rrp4_l 29.1 63 0.0014 25.3 3.1 51 341-396 3-62 (82)
34 PRK05807 hypothetical protein; 28.5 68 0.0015 28.3 3.5 63 340-407 1-71 (136)
35 PF01176 eIF-1a: Translation i 28.0 43 0.00094 25.6 1.9 15 381-395 38-52 (65)
36 PRK04012 translation initiatio 25.7 1E+02 0.0022 25.9 3.9 16 381-396 56-71 (100)
37 cd04456 S1_IF1A_like S1_IF1A_l 25.6 1.2E+02 0.0027 24.2 4.2 16 381-396 35-50 (78)
38 PRK04980 hypothetical protein; 24.1 1.6E+02 0.0035 24.9 4.8 26 369-394 16-41 (102)
39 COG3097 Uncharacterized protei 24.0 85 0.0018 26.2 3.0 32 369-401 17-48 (106)
40 cd04452 S1_IF2_alpha S1_IF2_al 23.7 81 0.0018 23.9 2.8 50 343-395 2-60 (76)
41 PF00575 S1: S1 RNA binding do 23.1 44 0.00095 25.3 1.2 51 342-395 2-59 (74)
42 cd03701 IF2_IF5B_II IF2_IF5B_I 23.1 1.1E+02 0.0024 25.1 3.7 19 338-356 23-41 (95)
43 PF03143 GTP_EFTU_D3: Elongati 21.0 2.2E+02 0.0048 23.2 5.1 50 344-412 49-98 (99)
44 PRK00276 infA translation init 20.1 2.4E+02 0.0052 21.9 4.8 16 382-397 44-59 (72)
No 1
>PLN02856 fumarylacetoacetase
Probab=100.00 E-value=2.1e-98 Score=762.41 Aligned_cols=416 Identities=75% Similarity=1.301 Sum_probs=379.8
Q ss_pred cccccccCCCCCCCCCCCCeEEEeeCCCCCceeEEEECCeEEechhhhhcCCCCCCCccCCCccCcccHHHHHhCCchhH
Q 014784 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAW 82 (418)
Q Consensus 3 ~~s~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~Gv~~~~~vvdL~~~~~~~~~~~~~~~~~~~~~~~~l~~fl~~g~~~~ 82 (418)
++|||+++++|||+|+|||||+|++.+++.+|+|+.+||+|+||+++...+++.+.......+|..++||+|+++|..+|
T Consensus 5 ~~swv~~~~~~~F~i~NlP~Gvfs~~~~~~~r~gvaigd~vldl~~~~~~~~~~~~~~~~~~~f~~~~Ln~f~alg~~~~ 84 (424)
T PLN02856 5 LKSFIDVAPDSDFPIQNLPYGVFSPESGATPRPGVAIGDYVLDLSALSEAGLFDGPLLSDSDCFSQPTLNKFMAMGRPAW 84 (424)
T ss_pred ccccccCCCCCCCCccccCeeEEECCCCCCceeEEEeCCEEEeHHHHHhcCCCCcccccccccccCcCHHHHHhCCHHHH
Confidence 57999999999999999999999998777999999999999999999887777653212246889999999999999999
Q ss_pred HHHHHHHHHHHhccchhhhhhhhhccccceecCCceEcCCcccCCcceeeccHHHHHHhccccCCCCCCCCCCCCCCCee
Q 014784 83 KEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIA 162 (418)
Q Consensus 83 ~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~v~ll~Pv~~~~~~~~~~~~~H~~e~g~~~~~~~~~~~p~~~~~P~~ 162 (418)
.++|+.|+.++++....++++..+....++|+++|+|++|+.+++|+||++|.+|+.|+|+.|++++++++|+|++.|++
T Consensus 85 ~~~R~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~v~l~~P~~~~~~~df~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~ 164 (424)
T PLN02856 85 KEARSTLQRLLSADEPALRDNSELRKKAFHPMSDVEMLLPAVIGDYTDFFSSREHATNVGTMFRGPENALNPNWLHLPIG 164 (424)
T ss_pred HHHHHHHHHHhhcCCcccccchhhhccceeehhhceEcCCCccceEEEEecHHHHHHHhhhhccCCccCCCcccccCCCE
Confidence 99999999999876655555555555678999999999999999999999999999999998888777788999999999
Q ss_pred eecCCcccccCCCeeeCCCCCcCCCC-CCCCCCCCCCCceeceEEEEEEcCCCCCCCCCChhHHhhceeEEEEEEcCchh
Q 014784 163 YHGRASSVVISGTDIVRPRGQFAPSG-NSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSAR 241 (418)
Q Consensus 163 f~k~~ssivg~g~~I~~P~~~~~~~~-~~~p~~~~s~~lDyE~ELavVIGk~~~~gr~v~~eeA~~~I~Gyti~ND~SaR 241 (418)
|+|++|||+++|++|.+|.++.++.+ ...|.|.+++++|||+|||+||||++++|++|++++|++|||||||+||||||
T Consensus 165 y~gr~sSvv~sg~~I~rP~gq~~~~~~~~~p~f~~s~~lDyE~ELavVIGk~~~~g~~I~~~~A~d~IfGytl~ND~SAR 244 (424)
T PLN02856 165 YHGRASSVVPSGTDIRRPRGQLHPNDGSSRPYFGPSAKLDFELEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDWSAR 244 (424)
T ss_pred EcCCCceEEcCCCceeCCCCCccCCCCCCCCcccCcCceEEEEEEEEEECcCccccCCCCHHHHHhhheEEEEeeechhh
Confidence 99999999999999999998765422 23488889999999999999999988789999999999999999999999999
Q ss_pred hHhhhhhCCCCCccccccCCCCCCccccccccCCCcCCCCCCCCCCCcchhccCCceeeEEEEEEEeeCCCCCcEEEEec
Q 014784 242 DIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRS 321 (418)
Q Consensus 242 D~Q~~~~~~l~~~~~Ksfdt~lGPwivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~ 321 (418)
|+|.||+.++||++||+|+|+|||||||.|+++++++..|..++..++||++.++.+++|+|+|.++.|+..|++++|++
T Consensus 245 DiQ~wE~~plgpf~gKsF~t~igPwIVt~dal~p~r~~~~~~dp~~l~yl~~~~~~~~~i~l~v~v~~nG~~ng~~~q~~ 324 (424)
T PLN02856 245 DIQKWEYVPLGPFLGKSFATTISPWIVTLDALEPFRCDAPAQDPPPLPYLAEKNRKSYDISLEVAIKPAGQSKASVVCRS 324 (424)
T ss_pred hhhhhhcccCCcccccCCCCCCcCeEEcccccccccccccccCcccccccccccccceeEEEEEEEeeCCcccceeEEcC
Confidence 99999999999999999999999999999999999888888889999999999988999999998876654488999999
Q ss_pred CCC--CCCHHHHHHHHHhcceecCCCCEEEcCCCCCCcCCCCCceEEEEecCccceecCCC-CCccCCCCCEEEEEEEEe
Q 014784 322 NFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGF-TRKFLEDGDEVTFTGFCK 398 (418)
Q Consensus 322 ~t~--~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~~l~~~~~-~~~~L~~GD~V~~~~~~~ 398 (418)
|++ +|+++|||+|++|++|+|+|||||+||||+|+++.+.||++|++++|++++++.++ .++||+|||+|+++++|.
T Consensus 325 nt~~M~ws~~qlIah~~s~g~tL~pGDLi~TGTpsG~~~~~~G~llElt~~G~~p~~l~~g~~r~fL~dGD~V~l~g~~~ 404 (424)
T PLN02856 325 NFKHLYWTLAQQLAHHTVNGCNLRPGDLLGSGTISGPEPGSLGCLLELTWAGSREVSLEGGTRRKFLEDGDEVVLSGWCK 404 (424)
T ss_pred CHHHcCCCHHHHHHHHHhCCeecCCCCEEEeCCCCCCccCCCCCEEEEEeCCccceEeccCCccccCCCCCEEEEEEEEC
Confidence 998 99999999986799999999999999999999999999999999999999999888 799999999999999999
Q ss_pred cCCceEeeeeeeeEEeeCCC
Q 014784 399 GNGYTVGFGTCSGKIVPSTP 418 (418)
Q Consensus 399 ~~~~~~~~G~~~~~v~~~~~ 418 (418)
++|.+||||+|+++|+||++
T Consensus 405 ~~g~~igfG~~~g~v~pa~~ 424 (424)
T PLN02856 405 GDGYRVGFGTCSGKVLPALP 424 (424)
T ss_pred CCCccEeeeeeeeEEecCCC
Confidence 99999999999999999974
No 2
>TIGR01266 fum_ac_acetase fumarylacetoacetase. This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate.
Probab=100.00 E-value=5.9e-96 Score=743.64 Aligned_cols=411 Identities=61% Similarity=1.108 Sum_probs=372.4
Q ss_pred cccccCCCCCCCCCCCCeEEEeeCCCCCceeEEEECCeEEechhhhhcCCCCCC-CccCCCccCcccHHHHHhCCchhHH
Q 014784 5 SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGP-ILKDSDCFLQPNLNKFLSLGRPAWK 83 (418)
Q Consensus 5 s~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~Gv~~~~~vvdL~~~~~~~~~~~~-~~~~~~~~~~~~l~~fl~~g~~~~~ 83 (418)
|||+++++|||+|+|||||+|++.+++.+|+|+++||+|+||+++.. ++.+. ....+.+|.+++||+|+++|..+|.
T Consensus 1 swv~~~~~~~f~i~nlP~gvf~~~~~~~pR~gv~igd~vlDL~~~~~--~~~~~~~~~~~~~f~~~~Ln~f~alg~~~~~ 78 (415)
T TIGR01266 1 SFVPVAENSDFPIQNLPYGVFSTQANSSPRIGVAIGDQILDLSVIAH--LFTGPALSKHQHVFDQSTLNAFMALGRPAWK 78 (415)
T ss_pred CccCCCCCCCCCccccCeEEEECCCCCCceeEEEECCEEEeHHHHHh--hhcCccccccccccCCCCHHHHHhCCHHHHH
Confidence 89999999999999999999999777789999999999999999874 44332 1222468889999999999999999
Q ss_pred HHHHHHHHHHhccchhhhhhhhhccccceecCCceEcCCcccCCcceeeccHHHHHHhccccCCCCCCCCCCCCCCCeee
Q 014784 84 EARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAY 163 (418)
Q Consensus 84 ~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~v~ll~Pv~~~~~~~~~~~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f 163 (418)
++|+.|+.++.+....++++..+....++|+++|+||+|+.+++|+||+|+.+|+++.|+.|+++.++++|+|++.|++|
T Consensus 79 ~~R~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~v~l~lP~~i~dytDf~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~y 158 (415)
T TIGR01266 79 EARARLQNLLSASQARLRDNAALRQRALTPQAEATMHLPAQIGDYTDFYSSIQHATNVGIMFRGKENALLPNWKHLPVGY 158 (415)
T ss_pred HHHHHHHHHhhcCCccccccccccccceeehhHceecCCccchhhhhhhchHHHHHHHHhhccCCCCCCCcccccCCcEe
Confidence 99999999988765555555555566789999999999999999999999999999999998888888999999999999
Q ss_pred ecCCcccccCCCeeeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCChhHHhhceeEEEEEEcCchhhH
Q 014784 164 HGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDI 243 (418)
Q Consensus 164 ~k~~ssivg~g~~I~~P~~~~~~~~~~~p~~~~s~~lDyE~ELavVIGk~~~~gr~v~~eeA~~~I~Gyti~ND~SaRD~ 243 (418)
+|++||++++|++|.+|.++.++.....|.|.+++++|||+||||||||++++|++|++++|++|||||||+|||||||+
T Consensus 159 ~g~~sSvv~sg~~I~rP~gq~~~~~~~~p~f~ps~~lD~E~ELavvIGk~~~~g~~vs~e~A~~~IfGy~l~ND~SARDi 238 (415)
T TIGR01266 159 HGRASSIVVSGTPLRRPMGQTLPDNAKPPVFGPCKLLDMELEMAFFVGPGNRLGEPIPISKAEEHIFGVVLMNDWSARDI 238 (415)
T ss_pred ccCCceEEcCCCceeCCCccccCCcccCCcccccCceEEEEEEEEEECcCcccCCcCCHHHHHhhheEEEEeeEcchhhh
Confidence 99999999999999999988764334458888999999999999999998888999999999999999999999999999
Q ss_pred hhhhhCCCCCccccccCCCCCCccccccccCCCcCCCCCCCCCCCcchhccCCceeeEEEEEEEeeCCCCCcEEEEecCC
Q 014784 244 QAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNF 323 (418)
Q Consensus 244 Q~~~~~~l~~~~~Ksfdt~lGPwivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t 323 (418)
|.|||.++||++||+|+|+|||||||.|+|+++++..|..++..++||++.++..++|+|++++|++++++.+++|++++
T Consensus 239 Q~wE~~plgpf~~KsF~tsigPwIVT~daL~p~r~~~~~~dp~pl~yL~~~~~~~~~l~l~v~vnge~~~~~~~~q~~~~ 318 (415)
T TIGR01266 239 QAWEYVPLGPFLAKSFGTTISPWVVPIDALEPFRVPNPKQDPKPLPYLCHDAPYTFDINLEVSLKGEGMSEPATICRSNF 318 (415)
T ss_pred hhhhccccCccccccCCCCCcCeEeccccccccccccccccccccccccccCCCcceeEEEEEEecCcCcccceEEcCCH
Confidence 99999999999999999999999999999999988777778889999999988888888888887554445578999999
Q ss_pred C--CCCHHHHHHHHHhcceecCCCCEEEcCCCCCCcCCCCCceEEEEecCccceecCCC-CCccCCCCCEEEEEEEEecC
Q 014784 324 K--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGF-TRKFLEDGDEVTFTGFCKGN 400 (418)
Q Consensus 324 ~--~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~~l~~~~~-~~~~L~~GD~V~~~~~~~~~ 400 (418)
+ +|+++|||+|+++++|+|+|||||+||||+|+++.+.||++|++++|+.++.+.++ .++||++||+|+|+++|.++
T Consensus 319 ~~M~ws~~qlIah~S~~g~tL~pGDLi~TGTpsG~~~~~~G~~lE~t~~g~~~v~l~~g~~r~fL~dGD~V~~~~~~~~~ 398 (415)
T TIGR01266 319 KHMYWTMLQQLAHHSVNGCNLRPGDLLGSGTISGSEPGSFGSMLELSWKGKKPIDVGQGETRTFLEDGDEVILRGHCQGE 398 (415)
T ss_pred HhcCcCHHHHHHHHhcCCcccCCCCEEEeCCCCCCcccCCCcEEEEEeCCeeeeecCCCCCCCCCCCCCEEEEEEEECCC
Confidence 8 99999999998448999999999999999999999999999999999999999888 78999999999999999999
Q ss_pred CceEeeeeeeeEEeeCC
Q 014784 401 GYTVGFGTCSGKIVPST 417 (418)
Q Consensus 401 ~~~~~~G~~~~~v~~~~ 417 (418)
|++||||+|+++|+||.
T Consensus 399 g~~igfGe~~g~i~pa~ 415 (415)
T TIGR01266 399 GYRVGFGECAGKVLPAL 415 (415)
T ss_pred CCcEeeeeeeeEEecCC
Confidence 99999999999999984
No 3
>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-78 Score=574.13 Aligned_cols=412 Identities=59% Similarity=1.052 Sum_probs=389.3
Q ss_pred ccccccCCCCCCCCCCCCeEEEeeCCCCCceeEEEECCeEEechhhhhcCCCCCCC-ccCCCccCcccHHHHHhCCchhH
Q 014784 4 QSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPI-LKDSDCFLQPNLNKFLSLGRPAW 82 (418)
Q Consensus 4 ~s~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~Gv~~~~~vvdL~~~~~~~~~~~~~-~~~~~~~~~~~l~~fl~~g~~~~ 82 (418)
+||++++.+++|+++|+|+|+|++..+..+++|+.+|+.|++|+.... ++++|. ....+.|-+++|++|..++.++|
T Consensus 1 ~sf~~v~~~sdfpi~nlpygvfst~~d~~~~igvaIgdqIl~l~~i~~--lf~gp~l~~hQdvf~q~TLN~fMgL~~~AW 78 (420)
T KOG2843|consen 1 KSFVSVPQNSDFPIQNLPYGVFSTKADSSRHIGVAIGDQILNLAEIAN--LFDGPQLKAHQDVFKQSTLNAFMGLDFEAW 78 (420)
T ss_pred CCccccCCCCCCccccccccccccccCCCCcceeehhHHHHHHHHHHH--hhcCcchHHHHHHhhhhhHHHHhCCCHHHH
Confidence 489999999999999999999999999999999999999999998775 566654 35667888999999999999999
Q ss_pred HHHHHHHHHHHhccchhhhhhhhhccccceecCCceEcCCcccCCcceeeccHHHHHHhccccCCCCCCCCCCCCCCCee
Q 014784 83 KEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIA 162 (418)
Q Consensus 83 ~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~v~ll~Pv~~~~~~~~~~~~~H~~e~g~~~~~~~~~~~p~~~~~P~~ 162 (418)
+++|..+|.+++.+.+.++++..++....+|-++.+||.|-++++|+||+.+..|+.+.|-+|+++++++.|+|...|+-
T Consensus 79 ~eaR~~~Q~LLs~~~a~Lrdn~~Lr~~a~v~Qs~atmHLPAqIGDYTDFYSSihHATNVGIMFRgkeNALMPNW~hLPVG 158 (420)
T KOG2843|consen 79 DEARSQTQKLLSKGCAELRDNVDLRAVAIVPQSEATMHLPAQIGDYTDFYSSIHHATNVGIMFRGKENALMPNWRHLPVG 158 (420)
T ss_pred HHHHHHHHHHhhcchhhhccccceeeeeeeccccceeccchhhcchhhhhhhhhhccceeEEEeccccccCCcccccccc
Confidence 99999999999998888888888888889999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcccccCCCeeeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEc-CCCCCCCCCChhHHhhceeEEEEEEcCchh
Q 014784 163 YHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVG-PGNELGKPIDVNEAADHIFGVMLMNDWSAR 241 (418)
Q Consensus 163 f~k~~ssivg~g~~I~~P~~~~~~~~~~~p~~~~s~~lDyE~ELavVIG-k~~~~gr~v~~eeA~~~I~Gyti~ND~SaR 241 (418)
|++++||++.+|++|++|-++.+|.+...|.|++++.+|+|+|+|+.|| +.+.+|.+|+.++|+++|||++++||||||
T Consensus 159 YHGRASSvVVSGTpirRP~GQtkpddae~PvfGacKLlDfELEMAFFvGgpgN~LGepipi~kA~~~iFG~vLMNDWSAR 238 (420)
T KOG2843|consen 159 YHGRASSVVVSGTPIRRPLGQTKPDDAEKPVFGACKLLDFELEMAFFVGGPGNQLGEPIPIDKAWKNIFGFVLMNDWSAR 238 (420)
T ss_pred ccCceeeEEEcCCcccCcccCCCCCCCCCCcccchhhccceeeeeeEecCCccccCCccchhhhhhheeeEEEecccchh
Confidence 9999999999999999999998877667799999999999999999998 667789999999999999999999999999
Q ss_pred hHhhhhhCCCCCccccccCCCCCCccccccccCCCcCCCCCCCCCCCcchhccCCceeeEEEEEEEeeCCCCCcEEEEec
Q 014784 242 DIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRS 321 (418)
Q Consensus 242 D~Q~~~~~~l~~~~~Ksfdt~lGPwivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~ 321 (418)
|||.||+.|+|+|.+|||.|+++||+|+.++|.+|-...|+.||..++||++..|-+++|.|.|++.+++......++++
T Consensus 239 DIQkWEYVPLGPFlaKsfgTTvSPWVVp~~AL~Pf~v~Np~QdP~plpYL~hd~PftfDINL~Vslkpeg~~~~a~icKs 318 (420)
T KOG2843|consen 239 DIQKWEYVPLGPFLAKSFGTTVSPWVVPTAALKPFVVDNPPQDPEPLPYLRHDIPFTFDINLEVSLKPEGQNEDALICKS 318 (420)
T ss_pred hcccceeecccchhhhhcccccccceeeHhhcCccccCCCCCCCCCCcccccCCCceeeeeeEEEeccCCccccceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988876666889999
Q ss_pred CCC--CCCHHHHHHHHHhcceecCCCCEEEcCCCCCCcCCCCCceEEEEecCccceecCCC-CCccCCCCCEEEEEEEEe
Q 014784 322 NFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGF-TRKFLEDGDEVTFTGFCK 398 (418)
Q Consensus 322 ~t~--~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~~l~~~~~-~~~~L~~GD~V~~~~~~~ 398 (418)
|.+ +|++-|.|+|++-.+|.|+|||++++||.+|..+-.-|+++|++|.|.+++++..+ .++||++||+|.+++.|.
T Consensus 319 NFKhlYWT~lQQlaHHtVnGCNLRpGDLlaSGTiSGpep~~yGSmLELsWkGtK~~~lg~g~tRKFL~DgDEVii~G~Ce 398 (420)
T KOG2843|consen 319 NFKHLYWTPLQQLAHHTVNGCNLRPGDLLASGTISGPEPDSYGSMLELSWKGTKTLELGGGKTRKFLQDGDEVIIRGHCE 398 (420)
T ss_pred cchhhhhhHHHHhhhcccccccCCccceeccccccCCCCcchhhhhhhhhcCceeeecCCchhhhhhhcCCeEEEEeeec
Confidence 999 99999999999899999999999999999999999999999999999999999877 899999999999999999
Q ss_pred cCCceEeeeeeeeEEeeCC
Q 014784 399 GNGYTVGFGTCSGKIVPST 417 (418)
Q Consensus 399 ~~~~~~~~G~~~~~v~~~~ 417 (418)
.+|.+||||+|+++|+||.
T Consensus 399 knG~RIGFGeC~GkVLPA~ 417 (420)
T KOG2843|consen 399 KNGLRIGFGECVGKVLPAH 417 (420)
T ss_pred CCceEEecccccccccccc
Confidence 9999999999999999985
No 4
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.6e-55 Score=425.68 Aligned_cols=213 Identities=31% Similarity=0.416 Sum_probs=188.4
Q ss_pred cCCceEcCCcccCCcceeec---cHHHHHHhccccCCCCCCCCCCCCCCCeeeecCCcccccCCCeeeCCCCCcCCCCCC
Q 014784 114 MGKVEMLLPMEIGDYTDFFS---SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNS 190 (418)
Q Consensus 114 l~~v~ll~Pv~~~~~~~~~~---~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssivg~g~~I~~P~~~~~~~~~~ 190 (418)
+.++++++|+.++. ..||. |.+|++||+... + .++.|++|+|+++++++++++|.+|..
T Consensus 47 ~~~~~~~~~~~~~~-ki~cvG~NY~~Ha~E~~~~~---~------~p~~P~~F~K~~~a~~~~~~~i~~P~~-------- 108 (266)
T COG0179 47 LAEVRLLAPLPPPG-KIVCVGRNYADHAEEMGKDR---D------IPEEPVFFLKPPTAVIGPNDPIPLPPG-------- 108 (266)
T ss_pred ccccccccCCCCCC-cEEEEechHHHHHHHhccCC---C------CCCCCeeeccCcccccCCCCceECCCC--------
Confidence 67888999988654 23333 789999998641 1 235699999999999999999999976
Q ss_pred CCCCCCCCCceeceEEEEEEcCCCCCCCCCChhHHhhceeEEEEEEcCchhhHhhhhhCCCCCccccccCCC--CCCccc
Q 014784 191 PPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIV 268 (418)
Q Consensus 191 ~p~~~~s~~lDyE~ELavVIGk~~~~gr~v~~eeA~~~I~Gyti~ND~SaRD~Q~~~~~~l~~~~~Ksfdt~--lGPwiv 268 (418)
+.++|||+||||||||+ +++|++++|++||+|||++||||+||+|.+++ ..+|++||+|||+ +|||||
T Consensus 109 ------s~~~dyE~ELavvIGk~---~~~v~~e~A~d~I~GYti~nD~T~Rd~Q~~~~-~~~w~~aK~~d~~~Pigp~iv 178 (266)
T COG0179 109 ------SKGLDYEGELAVVIGKR---GKDVSVEDALDYIAGYTIGNDVTARDLQMEEK-GRPWTRAKGFDTFAPVGPWIV 178 (266)
T ss_pred ------CCCcceeEEEEEEECCc---CCCCCHHHHHhhheEEeeeeecchhcchhhhh-cCCcccccccCCCCCceeEEe
Confidence 78999999999999999 99999999999999999999999999997633 3589999999996 999999
Q ss_pred cccccCCCcCCCCCCCCCCCcchhccCCceeeEEEEEEEeeCCCCCcEEEEecCCC--CCCHHHHHHHHHhcceecCCCC
Q 014784 269 TLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGD 346 (418)
Q Consensus 269 t~del~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t~--~~~~~~lIa~~~S~~~tL~pGD 346 (418)
|.+++.+ ++++.|+++| ||+++|+++++ +|++++||+|+ |++|||+|||
T Consensus 179 ~~~e~~d--------------------~~~l~l~~~v--------NGe~~Q~g~t~~Mi~~i~~lI~~l-S~~~tL~pGD 229 (266)
T COG0179 179 TKDEISD--------------------PQNLPLSLRV--------NGEVRQRGNTSDMIFSIPELIAYL-SRFMTLEPGD 229 (266)
T ss_pred ccccCCC--------------------CccceEEEEE--------CCEEEecCcHHHcccCHHHHHHHH-hCCcccCCCC
Confidence 9998865 4668999999 99999999998 99999999997 9999999999
Q ss_pred EEEcCCCCCCcCCCCCceEEEEecCccceecCCCCCccCCCCCEEEEEEEEecCCceEeeeeeeeEEeeCC
Q 014784 347 LLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 417 (418)
Q Consensus 347 vI~TGTp~Gvg~~~~G~~le~~~~G~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~~~ 417 (418)
||+||||+||| ||++||+|+++ ++ |||+|+|+|+.+.
T Consensus 230 vI~TGTP~Gvg--------------------------~l~~GD~v~~~--ie------giG~l~n~v~~~~ 266 (266)
T COG0179 230 VILTGTPSGVG--------------------------FLKPGDVVEVE--IE------GIGELENTVVKED 266 (266)
T ss_pred EEEeCCCCCcc--------------------------cCCCCCEEEEE--ec------ceeEEEEEEeeCC
Confidence 99999999984 88999999998 56 8999999999763
No 5
>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=100.00 E-value=2.9e-50 Score=388.04 Aligned_cols=212 Identities=25% Similarity=0.363 Sum_probs=186.6
Q ss_pred ccceecCCceEcCCcccCCcceeec---cHHHHHHhccccCCCCCCCCCCCCCCCeeeecCCcccccCCCeeeCCCCCcC
Q 014784 109 KSLVPMGKVEMLLPMEIGDYTDFFS---SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFA 185 (418)
Q Consensus 109 ~~~~~l~~v~ll~Pv~~~~~~~~~~---~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssivg~g~~I~~P~~~~~ 185 (418)
+..+++++++|++|+.++ ..+|. |.+|++|++.. .| +.|++|+|+++++++++++|.+|..
T Consensus 26 ~~~~~~~~v~ll~P~~p~--ki~~vg~Ny~~h~~e~~~~--------~p---~~P~~F~Kp~~s~~g~~~~i~~P~~--- 89 (245)
T TIGR02303 26 GRALPPEQVTWLPPFEPG--TIFALGLNYADHASELGFS--------PP---EEPLVFLKGNNTLTGHKGVTYRPKD--- 89 (245)
T ss_pred CCccccccceEcCCCCCC--eEEEEeCCHHHHHHHhCCC--------CC---CCCEEEEcCcceeeCCCCcEECCCC---
Confidence 456899999999999744 24444 78999998742 12 5799999999999999999999875
Q ss_pred CCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCChhHHhhceeEEEEEEcCchhhHhhhhhCCCCCccccccCCC--C
Q 014784 186 PSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--L 263 (418)
Q Consensus 186 ~~~~~~p~~~~s~~lDyE~ELavVIGk~~~~gr~v~~eeA~~~I~Gyti~ND~SaRD~Q~~~~~~l~~~~~Ksfdt~--l 263 (418)
+..+|||+||+|||||+ ++++++++|++||+|||++||||+||+|...+ .+|.++|+|||+ +
T Consensus 90 -----------~~~ld~E~EL~vvigk~---~~~v~~~~A~~~I~Gytv~nD~T~Rd~q~~~~--~~~~~aK~~D~~~pl 153 (245)
T TIGR02303 90 -----------VRFMHYECELAVVVGKT---AKNVKREDAMDYVLGYTIANDYAIRDYLENYY--RPNLRVKNRDTFTPI 153 (245)
T ss_pred -----------CCceeEEEEEEEEECCC---CCCCCHHHHhhheeEEEEEeecchHHHHhhhc--CCcccccCCCCCEee
Confidence 67899999999999999 99999999999999999999999999997644 479999999997 9
Q ss_pred CCccccccccCCCcCCCCCCCCCCCcchhccCCceeeEEEEEEEeeCCCCCcEEEEecCCC--CCCHHHHHHHHHhccee
Q 014784 264 SPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCN 341 (418)
Q Consensus 264 GPwivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t~--~~~~~~lIa~~~S~~~t 341 (418)
|||++|++++.+ +.++.|++++ ||+++|+++++ +|++.+||+|+ |+++|
T Consensus 154 Gp~i~t~~~~~d--------------------~~~l~i~l~v--------NGe~~q~g~t~~ml~~v~~Li~~l-s~~~t 204 (245)
T TIGR02303 154 GPWIVDKEDVED--------------------PMNLWLRTYV--------NGELTQEGNTSDMIFSVAELIEYL-SEFMT 204 (245)
T ss_pred CCcCCCHHHcCC--------------------ccccEEEEEE--------CCEEEEecCHHHhccCHHHHHHHH-hcCCC
Confidence 999999998854 2568888888 99999999998 99999999997 89999
Q ss_pred cCCCCEEEcCCCCCCcCCCCCceEEEEecCccceecCCCCCccCCCCCEEEEEEEEecCCceEeeeeeeeEEee
Q 014784 342 LRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVP 415 (418)
Q Consensus 342 L~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~ 415 (418)
|+|||||+||||.|++ +|++||+|+++ ++ |+|+++|+|+.
T Consensus 205 L~pGDvIlTGTp~g~~--------------------------~l~~GD~v~~~--i~------glG~l~n~v~~ 244 (245)
T TIGR02303 205 LEPGDVILTGTPKGLS--------------------------DVKPGDVVRLE--IE------GVGALENPIVS 244 (245)
T ss_pred cCCCCEEEcCCCCCCe--------------------------EcCCCCEEEEE--Ec------CceeEEEEEEe
Confidence 9999999999999863 57999999998 55 99999999984
No 6
>KOG1535 consensus Predicted fumarylacetoacetate hydralase [General function prediction only]
Probab=100.00 E-value=1.8e-47 Score=348.62 Aligned_cols=185 Identities=27% Similarity=0.293 Sum_probs=164.0
Q ss_pred CceEcCCcccCCcceeec---cHHHHHHhccccCCCCCCCCCCCCCCCeeeecCCcccccCCCeeeCCCCCcCCCCCCCC
Q 014784 116 KVEMLLPMEIGDYTDFFS---SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPP 192 (418)
Q Consensus 116 ~v~ll~Pv~~~~~~~~~~---~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssivg~g~~I~~P~~~~~~~~~~~p 192 (418)
++.++.|+..+.. ++|. |.+|++|++.. .+++|++|.|+.||++++|++|..|.+
T Consensus 2 ~~~~~~~~~~~~K-IVcVg~NY~dh~~E~~~~-----------~PkeP~~FlKptss~v~~g~~i~~p~~---------- 59 (217)
T KOG1535|consen 2 DVMLLRPLKWPTK-IVCVGRNYADHCKELNNP-----------VPKEPFFFLKPTSSIVGPGGPIVIPPG---------- 59 (217)
T ss_pred ccchhhhhhcCCe-EEEecccHHHHHHHhCCC-----------CCCCCeEEeecchhhcCCCCceEcCCC----------
Confidence 4567778877752 3333 78999998753 247899999999999999999999986
Q ss_pred CCCCCCCceeceEEEEEEcCCCCCCCCCChhHHhhceeEEEEEEcCchhhHhhhhhC-CCCCccccccCCC--CCCcccc
Q 014784 193 PFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLGKSFGTT--LSPWIVT 269 (418)
Q Consensus 193 ~~~~s~~lDyE~ELavVIGk~~~~gr~v~~eeA~~~I~Gyti~ND~SaRD~Q~~~~~-~l~~~~~Ksfdt~--lGPwivt 269 (418)
++.+|||+||++||||+ |+++++.+|++||+||+++.|+||||+|...+. +++|+.||+|||| +| -+++
T Consensus 60 ----~~~lh~EvEL~vVigK~---~~~v~~~~amd~v~Gy~valDmtARd~q~~ak~~g~pw~l~K~~Dtf~Pis-~~vp 131 (217)
T KOG1535|consen 60 ----SKGLHHEVELAVVIGKK---GSSVKKKDAMDYVGGYAVALDMTARDWQDEAKKKGLPWTLGKGFDTFTPIS-AIVP 131 (217)
T ss_pred ----cCccceeEEEEEEeccc---cccCChhhcccccccEEEEeeccchhhhhhhhhcCCCeeeccccCccCccc-cccc
Confidence 78899999999999999 999999999999999999999999999987654 6899999999997 99 5777
Q ss_pred ccccCCCcCCCCCCCCCCCcchhccCCceeeEEEEEEEeeCCCCCcEEEEecCCC--CCCHHHHHHHHHhcceecCCCCE
Q 014784 270 LDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDL 347 (418)
Q Consensus 270 ~del~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t~--~~~~~~lIa~~~S~~~tL~pGDv 347 (418)
.+.+.+ ++++.|.|+| ||+.+|+++|+ +|+++.+|+|+ |+.+||+||||
T Consensus 132 k~~v~D--------------------p~nl~L~l~V--------nG~~~Q~g~T~~mifkip~li~~i-s~~~tL~~GDv 182 (217)
T KOG1535|consen 132 KEKVPD--------------------PHNLWLWLRV--------NGETRQTGNTSLMIFKIPDLISRL-SQIMTLEPGDV 182 (217)
T ss_pred HHHCCC--------------------ccceEEEEEE--------ccEEEecCchhhheecHHHHHHHH-hhheeecCCCE
Confidence 788765 5778999988 99999999999 99999999997 99999999999
Q ss_pred EEcCCCCCCcCC
Q 014784 348 LGTGTISGPEPE 359 (418)
Q Consensus 348 I~TGTp~Gvg~~ 359 (418)
|+||||.|||++
T Consensus 183 ILTGTP~GVg~v 194 (217)
T KOG1535|consen 183 ILTGTPEGVGEV 194 (217)
T ss_pred EEecCCCccccc
Confidence 999999999876
No 7
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=100.00 E-value=1.3e-43 Score=366.06 Aligned_cols=190 Identities=20% Similarity=0.196 Sum_probs=161.2
Q ss_pred cHHHHHHhccccCC-CCCCCCCCCCCCCeeeecCCcccccCCCeeeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcC
Q 014784 134 SMHHAKNCGTIFRG-PANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGP 212 (418)
Q Consensus 134 ~~~H~~e~g~~~~~-~~~~~~p~~~~~P~~f~k~~ssivg~g~~I~~P~~~~~~~~~~~p~~~~s~~lDyE~ELavVIGk 212 (418)
|++|++|++..+.. +.++ .++.|++|+|+++++++++++|.+|.+ .++|||+||++||||
T Consensus 12 y~~~~~~~~~~~~~~~~~~----~p~~P~~F~Kp~~al~g~~~~i~~P~~---------------~~~~~E~EL~vvIGk 72 (429)
T PRK15203 12 HRSQLDAWQEAFQQSPYKA----PPKTAVWFIKPRNTVIRCGEPIPFPQG---------------EKVLSGATVALIVGK 72 (429)
T ss_pred hHHHHHhhhhhccccccCC----CCCCCEEEecCcceeeCCCCcEECCCC---------------CCceEEEEEEEEECC
Confidence 78999987643211 1112 236799999999999999999999863 369999999999999
Q ss_pred CCCCCCCCChhHHhhceeEEEEEEcCchhhHhhhhhCCCCCccccccCCC--CCCccccccccCCCcCCCCCCCCCCCcc
Q 014784 213 GNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPY 290 (418)
Q Consensus 213 ~~~~gr~v~~eeA~~~I~Gyti~ND~SaRD~Q~~~~~~l~~~~~Ksfdt~--lGPwivt~del~~~~~~~~~~~~~~~~~ 290 (418)
+ |++|++++|++||+|||++||+|+||+|.. .+|.++|+|||| +||||++. +
T Consensus 73 ~---~~~v~~~~A~~~V~Gyti~nD~t~rd~q~~----~~~~~~K~~D~~~p~Gp~i~~~----~--------------- 126 (429)
T PRK15203 73 T---ATKVREEDAAEYIAGYALANDVSLPEESFY----RPAIKAKCRDGFCPIGETVALS----N--------------- 126 (429)
T ss_pred c---cCCCCHHHHhhheeEEEEEEEeechhhccc----CCcccccCCCCCcccCCeEECC----C---------------
Confidence 9 999999999999999999999999999863 369999999996 99999642 2
Q ss_pred hhccCCceeeEEEEEEEeeCCCCCcEEEEecCCC--CCCHHHHHHHHHhcceecCCCCEEEcCCCCCCcCCCCCceEEEE
Q 014784 291 LAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELT 368 (418)
Q Consensus 291 ~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t~--~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~ 368 (418)
+.++.|+++| ||+++|+++++ +|+++++|+|+ |++|||+|||||+||||+|++
T Consensus 127 -----~~~l~i~~~v--------NGe~~Q~~~t~~Mi~~~~~lis~l-S~~~tL~pGDvI~TGTP~g~~----------- 181 (429)
T PRK15203 127 -----VDNLTIYTEI--------NGRPADHWNTADLQRNAAQLLSAL-SEFATLNPGDAILLGTPQARV----------- 181 (429)
T ss_pred -----ccceEEEEEE--------CCEEEecCCHHHcCCCHHHHHHHH-hCCCCcCCCCEEEcCCCCCce-----------
Confidence 2458889988 99999999998 99999999997 999999999999999999864
Q ss_pred ecCccceecCCCCCccCCCCCEEEEEEEEecCCceEeeeeeeeEEeeC
Q 014784 369 WNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 416 (418)
Q Consensus 369 ~~G~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~~ 416 (418)
+|++||+|+++ ++ |+|+|+|.|+.+
T Consensus 182 ---------------~l~~GD~v~~~--i~------gig~l~n~v~~~ 206 (429)
T PRK15203 182 ---------------EIQPGDRVRVL--AE------GFPPLENPVVDE 206 (429)
T ss_pred ---------------ECCCCCEEEEE--Ee------CeeEEEEEEEEc
Confidence 67888888877 45 788888888743
No 8
>PRK10691 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=330.00 Aligned_cols=189 Identities=21% Similarity=0.267 Sum_probs=164.5
Q ss_pred cHHHHHHhccccCCCCCCCCCCCCCCCeeeecCCcccccCCCeeeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCC
Q 014784 134 SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPG 213 (418)
Q Consensus 134 ~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssivg~g~~I~~P~~~~~~~~~~~p~~~~s~~lDyE~ELavVIGk~ 213 (418)
|.+|++|++.. .| +.|++|.|+++++++++++|.+|.+ +.++|||+||||||||+
T Consensus 26 y~~h~~e~~~~--------~p---~~P~~F~K~~~~~~~~~~~i~~P~~--------------~~~ld~E~ELavvigk~ 80 (219)
T PRK10691 26 YAKHIKEMGSA--------TP---EEPVLFIKPETALCDLRQPLAIPKD--------------FGSVHHEVELAVLIGAT 80 (219)
T ss_pred HHHHHHHhCCC--------CC---CCCEEEECCcceeeCCCCcEECCCC--------------CCCeeEEEEEEEEECCC
Confidence 78999998742 12 5699999999999999999999875 67899999999999999
Q ss_pred CCCCCCCChhHHhhceeEEEEEEcCchhhHhhhhhC-CCCCccccccCCC--CCCccccccccCCCcCCCCCCCCCCCcc
Q 014784 214 NELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPY 290 (418)
Q Consensus 214 ~~~gr~v~~eeA~~~I~Gyti~ND~SaRD~Q~~~~~-~l~~~~~Ksfdt~--lGPwivt~del~~~~~~~~~~~~~~~~~ 290 (418)
++++++++|++||+|||++||||+||+|.+.+. ..+|.++|+||++ +|||+++.+...+
T Consensus 81 ---~~~v~~~~a~~~V~gyt~~nDvt~r~~q~~~~~~~~~~~~~K~~D~~~~~gp~i~~~~~~~d--------------- 142 (219)
T PRK10691 81 ---LRQATEEHVRKAIAGYGVALDLTLRDLQGKMKKAGQPWEKAKAFDNSCPISGFIPVAEFTGD--------------- 142 (219)
T ss_pred ---CCCCCHHHHhhhheEEEEEEEeEhhhhhhhhccccCCccccccCCCCcCcCCcEEchhccCC---------------
Confidence 999999999999999999999999999987543 3468899999996 8999987544222
Q ss_pred hhccCCceeeEEEEEEEeeCCCCCcEEEEecCCC--CCCHHHHHHHHHhcceecCCCCEEEcCCCCCCcCCCCCceEEEE
Q 014784 291 LAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELT 368 (418)
Q Consensus 291 ~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t~--~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~ 368 (418)
+.++.+++++ ||+.+|+++++ +|++.++|+|+ |+++||+|||||+||||+|++
T Consensus 143 -----~~~l~i~l~v--------NG~~~q~g~~~~mi~~~~~lia~l-s~~~tL~aGDvI~TGTp~g~~----------- 197 (219)
T PRK10691 143 -----PQNTTLGLSV--------NGEVRQQGNTADMIHPIVPLIAYM-SRFFTLRAGDVVLTGTPEGVG----------- 197 (219)
T ss_pred -----ccccEEEEEE--------CCEEEEecCHHHhccCHHHHHHHH-hcCCccCCCCEEEcCCCCCCE-----------
Confidence 3457888888 99999999988 99999999997 999999999999999999864
Q ss_pred ecCccceecCCCCCccCCCCCEEEEEEEEecCCceEeeeeeeeEEe
Q 014784 369 WNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIV 414 (418)
Q Consensus 369 ~~G~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~ 414 (418)
+|++||+|+++ |+ |+ +|+++|+
T Consensus 198 ---------------~l~~GD~v~~~--i~------gl-~~~~~~~ 219 (219)
T PRK10691 198 ---------------PLQSGDELTVT--FN------GH-SLTTRVL 219 (219)
T ss_pred ---------------ECCCCCEEEEE--Ee------CE-EEEEEeC
Confidence 47899999887 55 88 9999874
No 9
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=100.00 E-value=2.7e-42 Score=356.39 Aligned_cols=204 Identities=22% Similarity=0.280 Sum_probs=177.9
Q ss_pred EcCCcccCCcceeec---cHHHHHHhccccCCCCCCCCCCCCCCCeeeecCCcccccCCCeeeCCCCCcCCCCCCCCCCC
Q 014784 119 MLLPMEIGDYTDFFS---SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFG 195 (418)
Q Consensus 119 ll~Pv~~~~~~~~~~---~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssivg~g~~I~~P~~~~~~~~~~~p~~~ 195 (418)
+++|+.++. .++|. |.+|++|++.. . ++.|++|+|+++++++++++|.+|..
T Consensus 215 ~~~p~~~~~-ki~~vg~Ny~~h~~e~~~~--------~---p~~P~~F~K~~~s~~g~~~~i~~P~~------------- 269 (429)
T PRK15203 215 FPTPPHPHG-TLFALGLNYADHASELEFK--------P---PEEPLVFLKAPNTLTGDNQTSVRPNN------------- 269 (429)
T ss_pred cccCCCCCC-eEEEEcCCHHHHHHHhCCC--------C---CCCCEEEEcCcceeeCCCCCEECCCC-------------
Confidence 667777664 24444 78999998642 1 25799999999999999999999875
Q ss_pred CCCCceeceEEEEEEcCCCCCCCCCChhHHhhceeEEEEEEcCchhhHhhhhhCCCCCccccccCCC--CCCcccccccc
Q 014784 196 PSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDAL 273 (418)
Q Consensus 196 ~s~~lDyE~ELavVIGk~~~~gr~v~~eeA~~~I~Gyti~ND~SaRD~Q~~~~~~l~~~~~Ksfdt~--lGPwivt~del 273 (418)
+..+|||+||||||||+ +++++++||++||+|||++||+|+||+|...+ .+|+++|+|||+ +|||++|.|++
T Consensus 270 -~~~ld~E~ELavVigk~---~~~v~~~ea~~~V~Gy~~~nD~t~rd~q~~~~--~~w~~~K~~d~~~plGp~~v~~d~~ 343 (429)
T PRK15203 270 -IEYMHYEAELVVVIGKQ---ARKVSEADAMDYVAGYTVCNDYAIRDYLENYY--RPNLRVKSRDGLTPILSTIVPKEAI 343 (429)
T ss_pred -CCceEEEEEEEEEECCC---CCCCCHHHHhhheeEEEEEEeccchhhhhhhc--CCceEeccCCCCcCCCCCEeChhhc
Confidence 67899999999999999 99999999999999999999999999996543 468999999996 99999999877
Q ss_pred CCCcCCCCCCCCCCCcchhccCCceeeEEEEEEEeeCCCCCcEEEEecCCC--CCCHHHHHHHHHhcceecCCCCEEEcC
Q 014784 274 EPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTG 351 (418)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t~--~~~~~~lIa~~~S~~~tL~pGDvI~TG 351 (418)
.+ +.++.+++++ ||+++|+++++ +|++.++|+|+ |++++|+|||+|+||
T Consensus 344 ~d--------------------~~~l~i~l~v--------NG~~vq~g~t~~m~~~v~~li~~l-s~~~tL~aGDvI~TG 394 (429)
T PRK15203 344 PD--------------------PHNLTLRTFV--------NGELRQQGTTADLIFSVPFLIAYL-SEFMTLNPGDMIATG 394 (429)
T ss_pred CC--------------------ccceEEEEEE--------CCEEEEeeCHHHhccCHHHHHHHH-hcCCCcCCCCEEEeC
Confidence 54 3568888888 99999999998 99999999997 899999999999999
Q ss_pred CCCCCcCCCCCceEEEEecCccceecCCCCCccCCCCCEEEEEEEEecCCceEeeeeeeeEEeeC
Q 014784 352 TISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 416 (418)
Q Consensus 352 Tp~Gvg~~~~G~~le~~~~G~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~~ 416 (418)
||.|++ +|++||+|+++ ++ |+|+++|+|+.+
T Consensus 395 Tp~g~~--------------------------~l~pGD~v~~~--i~------glG~l~n~v~~~ 425 (429)
T PRK15203 395 TPKGLS--------------------------DVVPGDEVVVE--VE------GVGRLVNRIVSE 425 (429)
T ss_pred CCCCCe--------------------------ECCCCCEEEEE--Ec------CceEEEEEEEec
Confidence 999863 57999999987 56 899999999855
No 10
>PRK12764 hypothetical protein; Provisional
Probab=100.00 E-value=2.4e-40 Score=347.45 Aligned_cols=194 Identities=23% Similarity=0.313 Sum_probs=168.6
Q ss_pred cHHHHHHhccccCCCCCCCCCCCCCCCeeeecCCcccccCCCeeeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCC
Q 014784 134 SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPG 213 (418)
Q Consensus 134 ~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssivg~g~~I~~P~~~~~~~~~~~p~~~~s~~lDyE~ELavVIGk~ 213 (418)
|.+|++|++.. ++.|++|+|+++++++++++|.+|.+ +..+|||+||+|||||+
T Consensus 31 y~~ha~e~~~~------------p~~P~~f~K~~~sl~~~g~~I~~p~~--------------~~~l~~E~ELavVIgr~ 84 (500)
T PRK12764 31 YPSRAAQRGRT------------PAQPSYFLKPSSSLALSGGTVERPAG--------------TELLAFEGEIALVIGRP 84 (500)
T ss_pred CHHHHHHhCCC------------CCCCEEEEeccceEeCCCCeEECCCC--------------CCceeEEEEEEEEECCc
Confidence 78999998631 25699999999999999999999875 57899999999999999
Q ss_pred CCCCCCCChhHHhhceeEEEEEEcCchhhHhhhhhCCCCCccccccCCC--CCCccccccccCCCcCCCCCCCCCCCcch
Q 014784 214 NELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYL 291 (418)
Q Consensus 214 ~~~gr~v~~eeA~~~I~Gyti~ND~SaRD~Q~~~~~~l~~~~~Ksfdt~--lGPwivt~del~~~~~~~~~~~~~~~~~~ 291 (418)
+++++.+||++||+|||++||+|+||+|..++ ..|+++|+||++ +|||+++.+++++
T Consensus 85 ---~~~v~~eea~~~I~Gyt~~nDvt~rD~~~~d~--~~~~~~K~~Dg~~plGp~iv~~~~~d~---------------- 143 (500)
T PRK12764 85 ---ARRVSPEDAWSHVAAVTAANDLGVYDLRYADK--GSNLRSKGGDGFTPIGPALISARGVDP---------------- 143 (500)
T ss_pred ---CCCCCHHHHHhhheEEEEecceeeehhhhhhc--CCcccccccCccEecCCCccCccccCc----------------
Confidence 89999999999999999999999999997654 257899999996 9999999988843
Q ss_pred hccCCceeeEEEEEEEeeCCCCCcEEEEecCCC--CCCHHHHHHHHHhcceecCCCCEEEcCCCCCCcCCCCCceEEEEe
Q 014784 292 AEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTW 369 (418)
Q Consensus 292 ~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t~--~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~ 369 (418)
.++.|+++| ||+++|+++++ +|++.+||+|+ |+++||+|||||+||||.|++
T Consensus 144 -----~~l~i~~~v--------NGe~~Q~g~t~dmi~~v~~LI~~l-S~~~tL~pGDvIlTGTp~g~~------------ 197 (500)
T PRK12764 144 -----AQLRVRTWV--------NGELVQDDTTEDLLFPFAQLVADL-SQLLTLEEGDVILTGTPAGSS------------ 197 (500)
T ss_pred -----cceEEEEEE--------CCEEEEeccHHHhcCCHHHHHHHH-hcCCCcCCCCEEEeCCCCCCe------------
Confidence 568888888 99999999998 99999999997 999999999999999999863
Q ss_pred cCccceecCCCCCccCCCCCEEEEEEEEe--cCCceEeeeeeeeEEeeCC
Q 014784 370 NGQKPLSLDGFTRKFLEDGDEVTFTGFCK--GNGYTVGFGTCSGKIVPST 417 (418)
Q Consensus 370 ~G~~~l~~~~~~~~~L~~GD~V~~~~~~~--~~~~~~~~G~~~~~v~~~~ 417 (418)
+|++||+|+++ ++ .+|..+ ||+|+|+|+...
T Consensus 198 --------------~l~pGD~v~~~--i~gi~~~~~~-~G~L~n~v~~~~ 230 (500)
T PRK12764 198 --------------VAAPGDVVEVE--VDAPADGAPS-TGRLVTRVVEGT 230 (500)
T ss_pred --------------ecCCCCEEEEE--EcCCccCCCC-cceEEEEEEeCC
Confidence 67899999888 55 223332 499999998654
No 11
>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I.; InterPro: IPR002529 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the C-terminal domain of fumarylacetoacetase, as well as other domains that share a homologous sequence, including: 5-carboxymethyl-2-hydroxymuconate delta-isomerase (CHM isomerase; 5.3.3.10 from EC), which catalyses the conversion of 5-carboxymethyl-2-hydroxymuconate to 5-carboxy-2-oxohept-3-enedioate []. 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (OPET decarboxylase; 4.1.1.68 from EC), which catalyses the conversion of 5-oxopent-3-ene-1,2,5-tricarboxylate to 2-oxohept-3-enedioate and carbon dioxide. Bifunctional enzyme HpcE (OPET decarboxylase 4.1.1.68 from EC/HHDD isomerase 5.3.3.10 from EC), which is a duplication consisting of a tandem repeat of two FAH C-terminal-like domains. This enzyme is responsible for the degradation of 4-hydroxyphenylacetate, a product of tyrosine and phenylalanine metabolism also released by lignin catabolism []. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1SAW_B 3LZK_B 3S52_B 2WQT_Q 1SV6_C 2DFU_B 1WZO_D 3QDF_A 1GTT_B 1I7O_C ....
Probab=100.00 E-value=4.1e-39 Score=305.12 Aligned_cols=207 Identities=31% Similarity=0.385 Sum_probs=172.3
Q ss_pred eeccHHHHHHhccccCCCCCCCCCCCCCCCeeeecCCcccccCCCeeeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEE
Q 014784 131 FFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVV 210 (418)
Q Consensus 131 ~~~~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssivg~g~~I~~P~~~~~~~~~~~p~~~~s~~lDyE~ELavVI 210 (418)
..+|.+|+++++... ...+ .-.+...|++|.|++++++++|++|.+|.. +..+|||+||++||
T Consensus 6 ~~n~~~~~~~~~~~~--~~~p-~~~~~~~p~~~~~~~~~~~~~g~~i~~p~~--------------~~~~~~E~Ela~vi 68 (218)
T PF01557_consen 6 GLNYTSHAEEAGAGD--VDEP-DYGVPVEPVFFMKPPSSLVGSGAPIPLPRG--------------SRRLDYEAELAFVI 68 (218)
T ss_dssp ESEBHHHHHHTTTTC--SSTT-SEECECSGEEEEEEGGGEEETTSEEEECTT--------------SSSEEEEEEEEEEE
T ss_pred eEchHHHHHHhCcCC--CCCC-ccccccCCeEEecCCceeecCCCceecCcc--------------ccccCcceEEEEEE
Confidence 344789999987541 1111 012235788999999999999999999875 68899999999999
Q ss_pred cCCCCCCCCC-ChhHHhhceeEEEEEEcCchhhHhhhhhCCCCCccccccCCC--CCCccccccccCCCcCCCCCCCCCC
Q 014784 211 GPGNELGKPI-DVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQP 287 (418)
Q Consensus 211 Gk~~~~gr~v-~~eeA~~~I~Gyti~ND~SaRD~Q~~~~~~l~~~~~Ksfdt~--lGPwivt~del~~~~~~~~~~~~~~ 287 (418)
||+ ++++ ++++|++||+||+++||||+|++|.+.+.+++|+.+|+|+++ +|||+++++++.++
T Consensus 69 g~~---~~~~~~~~ea~~~i~g~~~~~d~~~r~~~~~~~~~~~~~~~k~~~~~~~~Gp~~v~~~~~~~~----------- 134 (218)
T PF01557_consen 69 GRP---LRNVYTPEEALDAIAGYTPANDVTARDLQWRERPGLPWIADKSFDGSLVLGPWVVPPDELPDL----------- 134 (218)
T ss_dssp SS----BSSTH-HHHHGGGEEEEEEEEEEEEHHHHHHHHHTHSSHHHHSSTTCEEEEEEEEEHSSHSGT-----------
T ss_pred ecC---CCCCCCHHHHHHHhhEEeeecccchhhhhhhhhcccchhhccCcCcceeecccccccccccCc-----------
Confidence 998 8888 999999999999999999999999887755689999999996 99999999998752
Q ss_pred CcchhccCCceeeEEEEEEEeeCCCCCcEEEEecCCC--CCCHHHHHHHHHhcceecCCCCEEEcCCCCCCcCCCCCceE
Q 014784 288 LPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLL 365 (418)
Q Consensus 288 ~~~~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t~--~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~l 365 (418)
.+++++|++ ||+.+|+++++ +|++.++|+|+ |+.++|+|||+|+||||+|++..
T Consensus 135 ---------~~~~~~l~v--------nG~~~~~~~~~~~~~~~~~ll~~l-s~~~~L~aGdvI~TGt~~G~~~~------ 190 (218)
T PF01557_consen 135 ---------RDLRLRLRV--------NGEVVQSGSTSDMLGDPAELLAWL-SRGLTLRAGDVILTGTPTGVGAR------ 190 (218)
T ss_dssp ---------TSEEEEEEE--------TTEEEEEEEGGGBSSSHHHHHHHH-HTTS-B-TTEEEEEEESSTSEGS------
T ss_pred ---------ceEEEEEEE--------CCEEEEeccchhHHhhHHHHHHHH-hCCCCCCcceEEEcCCcCCCCcc------
Confidence 468888888 99999999998 99999999995 99999999999999999997420
Q ss_pred EEEecCccceecCCCCCccCCCCCEEEEEEEE-ecCCceEeeeeeeeEEe
Q 014784 366 ELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFC-KGNGYTVGFGTCSGKIV 414 (418)
Q Consensus 366 e~~~~G~~~l~~~~~~~~~L~~GD~V~~~~~~-~~~~~~~~~G~~~~~v~ 414 (418)
.++.||++||+|+++ + . |||+++|+|+
T Consensus 191 --------------~~~~~l~~Gd~v~~~--~~~------glG~l~~~v~ 218 (218)
T PF01557_consen 191 --------------PPPVPLQPGDRVEAE--IDE------GLGSLENTVA 218 (218)
T ss_dssp --------------SCCEEEBTT-EEEEE--EET------TTEEEEEEEE
T ss_pred --------------cccccCCCCcEEEEE--EEC------CEeEEEEEEC
Confidence 157899999999988 6 5 9999999985
No 12
>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=100.00 E-value=3.3e-38 Score=296.89 Aligned_cols=192 Identities=21% Similarity=0.212 Sum_probs=163.1
Q ss_pred cHHHHHHhccccCCCCCCCCCCCCCCCeeeecCCcccccCCCeeeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCC
Q 014784 134 SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPG 213 (418)
Q Consensus 134 ~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssivg~g~~I~~P~~~~~~~~~~~p~~~~s~~lDyE~ELavVIGk~ 213 (418)
|.+|++|++..+..... ...++.|++|+|++++++++|++|.+|.. +..++||+|||+||||+
T Consensus 10 y~~h~~~~~~~~~~~~~---~~~p~~P~~f~k~~~~~~~~g~~i~~p~~--------------~~~~~~E~ELa~vigr~ 72 (205)
T TIGR02305 10 YREQLDRLQEAFQQAPY---KAPPKTPVLYIKPRNTHNGCGQPIPLPAG--------------VEKLRSGATLALVVGRT 72 (205)
T ss_pred HHHHHHHhccccccccc---CCCCCCCEEEEcCcceEeCCCCeEECCCC--------------CCCccEEEEEEEEECCC
Confidence 78999999753211111 11236799999999999999999999864 56899999999999999
Q ss_pred CCCCCCCChhHHhhceeEEEEEEcCchhhHhhhhhCCCCCccccccCCC--CCCccccccccCCCcCCCCCCCCCCCcch
Q 014784 214 NELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYL 291 (418)
Q Consensus 214 ~~~gr~v~~eeA~~~I~Gyti~ND~SaRD~Q~~~~~~l~~~~~Ksfdt~--lGPwivt~del~~~~~~~~~~~~~~~~~~ 291 (418)
++++++++|++||+||+++||||+|+.|.+. .|.++|+||++ +||| ++.+++.+
T Consensus 73 ---~~~~~~~~a~~~v~g~~~~~dit~~~~~~~~----~~~~~k~~dg~~~lGp~-v~~~~~~d---------------- 128 (205)
T TIGR02305 73 ---ACRVREEEALDYVAGYALVNDVSLPEDSYYR----PAIKAKCRDGFCPIGPE-VPLSAIGN---------------- 128 (205)
T ss_pred ---CCCCCHHHHHHhhheeEEeeeeehhhhhccC----cchhhcccCCccccCCc-ccHHHcCC----------------
Confidence 8899999999999999999999999987542 58899999996 9999 77777644
Q ss_pred hccCCceeeEEEEEEEeeCCCCCcEEEEecCCC--CCCHHHHHHHHHhcceecCCCCEEEcCCCCCCcCCCCCceEEEEe
Q 014784 292 AEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTW 369 (418)
Q Consensus 292 ~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t~--~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~ 369 (418)
+.++.+++++ ||+.+|+++++ +|++.++|+|+ |++++|+|||||+||||.|+
T Consensus 129 ----~~~~~~~l~v--------ng~~~~~g~~~~~~~~~~~li~~l-s~~~~L~aGdvI~TGT~~g~------------- 182 (205)
T TIGR02305 129 ----PDELTIYTYI--------NGKPAQSNNTSNLVRSAAQLISEL-SEFMTLNPGDVLLLGTPEAR------------- 182 (205)
T ss_pred ----ccccEEEEEE--------CCEEEEeeCHHHhCcCHHHHHHHH-hCCCCcCCCCEEEeCCCCCC-------------
Confidence 2457888888 89999999988 99999999997 89999999999999999885
Q ss_pred cCccceecCCCCCccCCCCCEEEEEEEEecCCceEeeeeeeeEE
Q 014784 370 NGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKI 413 (418)
Q Consensus 370 ~G~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v 413 (418)
.+|++||+|+++ ++ |+|+++|+|
T Consensus 183 -------------~~l~~Gd~v~~~--i~------glG~l~n~v 205 (205)
T TIGR02305 183 -------------VEVGPGDRVRVE--AE------GLGELENPV 205 (205)
T ss_pred -------------eecCCCCEEEEE--Ec------CceeEEEeC
Confidence 367999999987 56 899999986
No 13
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=99.84 E-value=3.9e-20 Score=179.76 Aligned_cols=167 Identities=16% Similarity=0.084 Sum_probs=115.4
Q ss_pred CeeeecCCcccccCCCeeeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCChhHHh---hceeEEEEEE
Q 014784 160 PIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAA---DHIFGVMLMN 236 (418)
Q Consensus 160 P~~f~k~~ssivg~g~~I~~P~~~~~~~~~~~p~~~~s~~lDyE~ELavVIGk~~~~gr~v~~eeA~---~~I~Gyti~N 236 (418)
|++=.-..+.+..++.+|..+.. ..+++|+|||+||||+++ +++++.+|++ ++|+++.-+|
T Consensus 73 P~~g~l~~~~~~~~g~~i~~~~~---------------~~~~vE~Elafvlg~~l~-~~~~t~~ev~~ai~~v~~~~El~ 136 (255)
T TIGR03220 73 PDFGYLLDGMVYNEGEPIPTDTL---------------IQPKAEGEIAFVLKKDLM-GPGVTAADVLAATECVMPCFEIV 136 (255)
T ss_pred CcEEEeeccccccCCCeeccccC---------------ccceeeeEEEEEECCCCC-CCCCCHHHHHHHHhheeeeEEEc
Confidence 44333344556667787776542 479999999999999965 5789999655 6788888889
Q ss_pred cCchhhHhhhhhCCCCCccccccCCCCCCccccccccCCCcCCCCCCCCCCCcchhccCCceeeEEEEEEEeeCCCCCcE
Q 014784 237 DWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSC 316 (418)
Q Consensus 237 D~SaRD~Q~~~~~~l~~~~~Ksfdt~lGPwivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~~n~~~~~ng~ 316 (418)
|.+.||+|.. ..|..+|+.. -|. +|+.+++.+... .+...+.++|++ ||+
T Consensus 137 D~r~~~~~~~----~~~~~Ad~~~--~~~-~V~g~~~~~~~~---------------~~l~~~~~~l~v--------nG~ 186 (255)
T TIGR03220 137 DSRIRDWKIK----IQDTVADNAS--CGV-FVLGDTRVDPRK---------------LDLALCGMVLEK--------NGE 186 (255)
T ss_pred ccccccCCCC----ccceeeecCC--cce-EEECCCcCCccc---------------cChhhCceEEEE--------CCE
Confidence 9999998752 2567777632 222 333333322100 012344556777 999
Q ss_pred EEEecCCC--CCCHHHHHHHHHhc-----ceecCCCCEEEcCCCCCCcCCCCCceEEEEecCcc
Q 014784 317 VVTRSNFK--YWTLTQQLAHHTIN-----GCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQK 373 (418)
Q Consensus 317 ~~q~~~t~--~~~~~~lIa~~~S~-----~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~ 373 (418)
++|+++++ ++++.++|+|+ ++ +++|+|||+|+||||.|+.++++||.++++++|++
T Consensus 187 ~~~~g~~~~~lg~p~~~l~~L-~~~l~~~g~~L~aGdiV~TGt~~g~~~v~~Gd~v~~~~~glG 249 (255)
T TIGR03220 187 IVSTGAGAAALGSPVNAVAWL-ANTLGRLGIPLKAGEVILSGSLAALVPVKAGDNLRVSIGGIG 249 (255)
T ss_pred EEeecchhhccCCHHHHHHHH-HHHHHHcCCCCCCCCEEECCCCCCCeeCCCCCEEEEEEcCCc
Confidence 99999988 99999999997 66 88999999999999999765444444444444433
No 14
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional
Probab=99.78 E-value=2.7e-18 Score=167.51 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=119.2
Q ss_pred CCceeceEEEEEEcCCCCCCCCCChhHHhhceeEEEEEEcCchhhHhhhhhCCCCCccccccCCC---CCCccccccccC
Q 014784 198 QKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT---LSPWIVTLDALE 274 (418)
Q Consensus 198 ~~lDyE~ELavVIGk~~~~gr~v~~eeA~~~I~Gyti~ND~SaRD~Q~~~~~~l~~~~~Ksfdt~---lGPwivt~del~ 274 (418)
....+|+||++++||+++ +.+++.+|+.++|.++..+.++..++++.|.. ......+.+.... +|+.+...++++
T Consensus 100 ~~~~iE~Eiaf~l~~dl~-~~~~t~~ev~~ai~~v~paiEivdsr~~~~~~-~~~~~iAD~~~~~~~VlG~~~~~~~~~d 177 (262)
T PRK11342 100 LQPRIEAEIALVLNRDLP-ATDITFDELYNAIEWVLPALEVVGSRIRDWSI-QFVDTVADNASCGVYVIGGPAQRPAGLD 177 (262)
T ss_pred CCcceeeEEEEEECCCCC-CCCCCHHHHHHhhceEeeeEEecCCcccCCCC-chhheeecccccceEEECCCcCCcccCC
Confidence 457789999999999975 56789999999999999999999999987743 1122334443332 777766554443
Q ss_pred CCcCCCCCCCCCCCcchhccCCceeeEEEEEEEeeCCCCCcEEEEecCCC--CCCHHHHHHHHHhcc-----eecCCCCE
Q 014784 275 PFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTING-----CNLRSGDL 347 (418)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t~--~~~~~~lIa~~~S~~-----~tL~pGDv 347 (418)
..++.+++++ ||+.+|+++++ ++++.++|+|+ ++. ++|+||||
T Consensus 178 ---------------------~~~~~~~l~v--------ng~~~q~g~~~~~lg~p~~~l~~L-~~~l~~~g~~L~aGdv 227 (262)
T PRK11342 178 ---------------------LKNCAMKMTR--------NNEEVSSGRGSECLGHPLNAAVWL-ARKMASLGEPLRAGDI 227 (262)
T ss_pred ---------------------hhhCEEEEEE--------CCEEEEEEcHHHhccCHHHHHHHH-HHHHHHcCCCcCCCCE
Confidence 2457788888 99999999988 99999999876 444 69999999
Q ss_pred EEcCCCCCCcCCCCCceEEEEecCccceecCCCCCccCCCCCEEEEEEEEecCCceEeeeeeeeEEee
Q 014784 348 LGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVP 415 (418)
Q Consensus 348 I~TGTp~Gvg~~~~G~~le~~~~G~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~ 415 (418)
|+||||.|+ .++++||+|+++ ++ |+|++++++.-
T Consensus 228 V~TGt~~~~--------------------------~~l~~Gd~v~~~--i~------glG~v~~~~~~ 261 (262)
T PRK11342 228 ILTGALGPM--------------------------VAVNAGDRFEAH--IE------GIGSVAATFSS 261 (262)
T ss_pred EEcCCCCCC--------------------------eeCCCCCEEEEE--EC------CCceEEEEEec
Confidence 999999774 477899999887 55 89999988764
No 15
>PF09298 FAA_hydrolase_N: Fumarylacetoacetase N-terminal; InterPro: IPR015377 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the N-terminal domain of fumarylacetoacetase.; GO: 0004334 fumarylacetoacetase activity, 0009072 aromatic amino acid family metabolic process; PDB: 1QCN_B 1QCO_B 2HZY_A 1QQJ_B 1HYO_A.
Probab=99.67 E-value=1e-16 Score=136.03 Aligned_cols=105 Identities=50% Similarity=0.870 Sum_probs=80.2
Q ss_pred CCCCeEEEeeCCCCCceeEEEECCeEEechhhhhcCCCCCCC--ccCCCccCcccHHHHHhCCchhHHHHHHHHHHHHhc
Q 014784 18 QNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPI--LKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSS 95 (418)
Q Consensus 18 ~~~~~~~~~~~~~~~~r~Gv~~~~~vvdL~~~~~~~~~~~~~--~~~~~~~~~~~l~~fl~~g~~~~~~~r~~l~~~~~~ 95 (418)
+|||||+||+..++.+|+||.+||+|+||+++...++++++. .....+|..++||+|+++|.+.|.++|..|+++++.
T Consensus 1 qNLPfGVFst~~~~~pR~gvaIGd~VlDL~al~~~g~~~~~~~~~~~~~~f~~~tLN~fmalg~~~w~avR~~L~~lL~~ 80 (107)
T PF09298_consen 1 QNLPFGVFSTPDDPSPRVGVAIGDQVLDLSALAAAGLFDGPSLSPAAASAFAQPTLNDFMALGRPAWRAVRARLQELLSA 80 (107)
T ss_dssp TT--EEEEEESSEESEEEEEEETTEEEEHHHH--GGG--STTTTTG-GGGGGSSSSHHHHHC-HHHHHHHHHHHHHHHBT
T ss_pred CCCCcEEEecCCCCCCeeEEEECCEEEehHHHhhhcccCcccchhhhHhHhcCCCHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 599999999878899999999999999999998777776421 345788999999999999999999999999999985
Q ss_pred cchhhhhhhhhccccceecCCceEcCC
Q 014784 96 NEATLRDNANLRQKSLVPMGKVEMLLP 122 (418)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~l~~v~ll~P 122 (418)
..+...++........+|+++|+||.|
T Consensus 81 ~~~~~~~~~~~~~~~L~~~~~v~mhLP 107 (107)
T PF09298_consen 81 DNSELSDNQALVEPALVPQAEVTMHLP 107 (107)
T ss_dssp TSCHHHT-HHHHHHHEEEGGGEEEE-S
T ss_pred cCccccchHHHHHHhcccHHHhhcCCC
Confidence 444333344455678899999999988
No 16
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.
Probab=99.59 E-value=1.8e-14 Score=140.98 Aligned_cols=170 Identities=15% Similarity=0.057 Sum_probs=117.5
Q ss_pred CCeeeecCCcccccCCCeeeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCChhHHhhceeEEEEEEcC
Q 014784 159 LPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 238 (418)
Q Consensus 159 ~P~~f~k~~ssivg~g~~I~~P~~~~~~~~~~~p~~~~s~~lDyE~ELavVIGk~~~~gr~v~~eeA~~~I~Gyti~ND~ 238 (418)
.|++=.-..+.+..++..+.... -.+.-+|+|||+++|++++ +.+.+.+|++++|.+|..+.|+
T Consensus 77 ~P~~g~l~~~~~~~~g~~~~~~~---------------~~~p~vE~Eiaf~l~~~l~-~~~~t~~ev~~ai~~v~paiEi 140 (267)
T TIGR02312 77 EPDYGVLLDDMFFEDGSTIPADR---------------FIQPRVEVELAFVLKKDLE-GPNVTIFDVLNATDYVVPALEI 140 (267)
T ss_pred CCeeEEecCccccCCCCeecccc---------------ccccccceEEEEEECCCCC-CCCCCHHHHHHHhheEEeeEEE
Confidence 35443344455656666554421 2357899999999999965 5789999999999999999999
Q ss_pred chhhHhhhhhCC-C----CCccccccCC--C-CCCccccccccCCCcCCCCCCCCCCCcchhccCCceeeEEEEEEEeeC
Q 014784 239 SARDIQAWEYVP-L----GPFLGKSFGT--T-LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPA 310 (418)
Q Consensus 239 SaRD~Q~~~~~~-l----~~~~~Ksfdt--~-lGPwivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~~n~~ 310 (418)
..+.++.|.... . ....+.+..+ . +||.++.++.++ ...+.++|++
T Consensus 141 ~dsr~~~~~~~~~~~~~~~d~iADn~~~~~~v~G~~~~~~~~~d---------------------l~~~~~~l~~----- 194 (267)
T TIGR02312 141 IDARIERVDPETGATRKVFDTISDNAANAGIVLGGRPVRPDALD---------------------LRWVGAILYR----- 194 (267)
T ss_pred eeccccccccccCCccccccEecCCccceEEEECCCCCCccccC---------------------hhhcccEEEE-----
Confidence 999999875321 0 1112222212 1 788766554443 2345667777
Q ss_pred CCCCcEEEEecCCC--CCCHHHHHHHH----HhcceecCCCCEEEcCCCCCCcCCCCCceEEEEecCcc
Q 014784 311 GKEDSCVVTRSNFK--YWTLTQQLAHH----TINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQK 373 (418)
Q Consensus 311 ~~~ng~~~q~~~t~--~~~~~~lIa~~----~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~ 373 (418)
||+.+++++.+ ..++.+.+.|+ ..++.+|++||||+|||+.|+.++..|+.++++++|.+
T Consensus 195 ---nG~~~~~g~~~~~lg~P~~al~wL~~~l~~~G~~L~aGdiV~TGs~~~~~~v~~G~~~~~~~~glG 260 (267)
T TIGR02312 195 ---NGVVEETGLAAGVLNHPANGVAWLANKLAPWGETLEAGQVVLAGSFTRPVAARSGDTFHADYGPLG 260 (267)
T ss_pred ---CCEEEEEechhhhcCCHHHHHHHHHHHHHHcCCCCCCCCEEECCCCCCceecCCCCEEEEEEcCCc
Confidence 89999998777 88898877775 44556999999999999999766655555555555444
No 17
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]
Probab=99.47 E-value=5.8e-13 Score=129.03 Aligned_cols=182 Identities=23% Similarity=0.178 Sum_probs=126.8
Q ss_pred eeeecCCcccccCCCeeeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCChhHHhhceeEEEEEEcCch
Q 014784 161 IAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSA 240 (418)
Q Consensus 161 ~~f~k~~ssivg~g~~I~~P~~~~~~~~~~~p~~~~s~~lDyE~ELavVIGk~~~~gr~v~~eeA~~~I~Gyti~ND~Sa 240 (418)
+|+...+.+-+|+|+.|-.... |++-..|.|+++++-.. |+ |.|||++||+++
T Consensus 171 IFtKaqpmssVG~Ga~Igv~~~--------------S~WnnPEPEvvl~~dS~---G~----------I~GaTlgnDVnl 223 (379)
T COG3970 171 IFTKAQPMSSVGHGAQIGVRPD--------------SEWNNPEPEVVLAVDSS---GK----------IVGATLGNDVNL 223 (379)
T ss_pred heecCCccccccccceeeeccc--------------cccCCCCCeEEEEEcCC---Cc----------EEeeeecCcccc
Confidence 3444467788899998854322 78999999999999887 87 999999999999
Q ss_pred hhHhhhhhCCCCCccccccCCC--CCCccccccccCCCcCCCCCCCCCCCcchhccCCceeeEEEEEEEeeCCCCCcEE-
Q 014784 241 RDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCV- 317 (418)
Q Consensus 241 RD~Q~~~~~~l~~~~~Ksfdt~--lGPwivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~~n~~~~~ng~~- 317 (418)
||+..+. +|-..++|....+ +||+|++.||.-... +.....|+|.|... .|-.
T Consensus 224 RD~Egrs--aLlL~kaKdnnasCaiGPfIrlfDe~f~~~-----------------dv~~a~vtLkv~ge-----dgf~l 279 (379)
T COG3970 224 RDFEGRS--ALLLSKAKDNNASCAIGPFIRLFDETFTID-----------------DVKSAEVTLKVTGE-----DGFFL 279 (379)
T ss_pred ccccccc--chhcccccccCccccccceEEeecCCCChh-----------------hhhhceEEEEEEcc-----CceEE
Confidence 9998764 3444567766664 999999988753211 02334588888431 3322
Q ss_pred EEecCCC--CCCHHHHHHHHHhcceecCCCCEEEcCCCCCCcCCCCCceEEEEecCccceecCCCCCccCCCCCEEEEEE
Q 014784 318 VTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTG 395 (418)
Q Consensus 318 ~q~~~t~--~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~~l~~~~~~~~~L~~GD~V~~~~ 395 (418)
-..+|+. -.++.+++..++-+.....-|-++++||---++.-+ +. .+.+..-+.||.|||+
T Consensus 280 ~G~snm~~isR~p~~l~~Q~l~~~hqyPDG~~lflGTmfaP~kDr------------~~----~g~gfth~~gD~VeIS- 342 (379)
T COG3970 280 EGSSNMAEISRSPEELVIQALNRDHQYPDGFALFLGTMFAPGKDR------------GL----KGLGFTHEVGDIVEIS- 342 (379)
T ss_pred eccccHHhhccCHHHHHHHHhccCCCCCCceeEEeeeeecccccc------------CC----CCCCcccCCCCEEEEe-
Confidence 3334444 555777665555788889999999999964433210 00 0134567899999997
Q ss_pred EEecCCceEeeeeeeeEEeeCC
Q 014784 396 FCKGNGYTVGFGTCSGKIVPST 417 (418)
Q Consensus 396 ~~~~~~~~~~~G~~~~~v~~~~ 417 (418)
+. .||+|.|.|...+
T Consensus 343 -tp------~lG~Lin~V~~~d 357 (379)
T COG3970 343 -TP------KLGTLINPVTTSD 357 (379)
T ss_pred -cc------ccceeeeeeeccC
Confidence 55 8999999998654
No 18
>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase. Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.
Probab=99.23 E-value=2.5e-10 Score=111.67 Aligned_cols=146 Identities=13% Similarity=0.150 Sum_probs=104.1
Q ss_pred CCceeceEEEEEEcCCCCCCCCCChhHHhhceeEEEEEEcCchhhHhhhhhCCCCCccccccCCC---CCCccccccccC
Q 014784 198 QKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT---LSPWIVTLDALE 274 (418)
Q Consensus 198 ~~lDyE~ELavVIGk~~~~gr~v~~eeA~~~I~Gyti~ND~SaRD~Q~~~~~~l~~~~~Ksfdt~---lGPwivt~del~ 274 (418)
...-.|+|+++++|++++ +.+.+.+|+.++|..+..+.++-...+..|.. .+....+.+..+. +||+....+.++
T Consensus 104 ~~p~vE~Eiaf~l~~~l~-~~~~t~~ev~~ai~~v~paiEivdsR~~~~~~-~~~~~iADn~~~~~~vlG~~~~~~~~~d 181 (263)
T TIGR03218 104 IHPKVEAEIAFVTKAPLK-GPGCHIGDVLAATDFVMPAVEVIDSRYRDFKF-DLKSVIADNTSSARFVTGGRAANVEDLD 181 (263)
T ss_pred CcceeeeEEEEEECCCCC-CCCCCHHHHHHhhcEEEeeEEeccCcccCCCC-ChhheeeeccccceEEECCCCCCccccC
Confidence 346899999999999975 67899999999999999999998888876642 2233455554442 788776544432
Q ss_pred CCcCCCCCCCCCCCcchhccCCceeeEEEEEEEeeCCCCCcEEEEecCCC--CCCHHH----HHHHHHhcceecCCCCEE
Q 014784 275 PFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQ----QLAHHTINGCNLRSGDLL 348 (418)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t~--~~~~~~----lIa~~~S~~~tL~pGDvI 348 (418)
..++.+++++ ||+.++.+..+ .-++.. |+.++..++..|++||+|
T Consensus 182 ---------------------l~~~~~~l~~--------~g~~v~~g~g~~~lG~P~~al~wL~~~l~~~G~~L~aG~iV 232 (263)
T TIGR03218 182 ---------------------LRTLGVVMEK--------NGEVVAMGAGAAVLGHPAAAVAMLANHLAERGEEIPAGSFI 232 (263)
T ss_pred ---------------------HhhCcEEEEE--------CCEEEEeecccccCCCHHHHHHHHHHHHHHcCCCCCCCCEE
Confidence 2446677777 88888877755 555555 455556788899999999
Q ss_pred EcCCCCCCcCCCCCceEEEEecCccc
Q 014784 349 GTGTISGPEPESLGCLLELTWNGQKP 374 (418)
Q Consensus 349 ~TGTp~Gvg~~~~G~~le~~~~G~~~ 374 (418)
+|||..|+-++.+|+.+.++++|.+.
T Consensus 233 ~tGs~t~~~~v~~G~~~~~~~~glG~ 258 (263)
T TIGR03218 233 MSGGITEAVAVAPGDSVTVRYQGLGS 258 (263)
T ss_pred ECCcCcCceecCCCCEEEEEECCCce
Confidence 99999887555555555554444443
No 19
>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.86 E-value=1.1e-08 Score=98.27 Aligned_cols=147 Identities=18% Similarity=0.219 Sum_probs=107.3
Q ss_pred CceeceEEEEEEcCCCCCCCCCChhHHhhceeEEEEEEcCchhhHh-hhhhCCCCCccccccCC--C-CCCccccccccC
Q 014784 199 KLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQ-AWEYVPLGPFLGKSFGT--T-LSPWIVTLDALE 274 (418)
Q Consensus 199 ~lDyE~ELavVIGk~~~~gr~v~~eeA~~~I~Gyti~ND~SaRD~Q-~~~~~~l~~~~~Ksfdt--~-lGPwivt~del~ 274 (418)
..-+|+||+++++|+++ +-+.|..|+++||.-+..+..+-.-.++ .|+. ++..+.+.+... . |||-.+.+++++
T Consensus 102 ~prvE~EiafvL~kdlp-a~~~T~~d~l~a~~~v~palElidsri~~d~~~-~~~dtiaDnaan~G~ViG~~~~~~~~ld 179 (264)
T COG3971 102 QPRVEVEIAFVLKKDLP-APDCTVADVLNATDYVLPALELIDSRIKQDWQV-KFPDTIADNAANAGFVIGGRAVKPDDLD 179 (264)
T ss_pred ceeeeeeEEEEecCCCC-CCCCCHHHHHHHHHhhhhhhhhccchhhhCCCC-CcceEEecccccCceEECCCCCCchhhh
Confidence 34899999999999987 6899999999999999999988555555 4432 222344444433 2 998777776665
Q ss_pred CCcCCCCCCCCCCCcchhccCCceeeEEEEEEEeeCCCCCcEEEEecCCC--CCCHHHHHHHH----HhcceecCCCCEE
Q 014784 275 PFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHH----TINGCNLRSGDLL 348 (418)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t~--~~~~~~lIa~~----~S~~~tL~pGDvI 348 (418)
- .++...|+. ||+..+.+..+ +-++..=+.|+ ++.+.+|+.||||
T Consensus 180 ~---------------------~~~~~~l~r--------ng~~~e~g~~aavLghP~~a~~wLAn~~a~~G~~Lk~G~IV 230 (264)
T COG3971 180 L---------------------RNVGATLYR--------NGVEEETGVGAAVLGHPAAALAWLANKLAAYGVPLKAGDIV 230 (264)
T ss_pred h---------------------hhccceeee--------cCEEEEeeechhhcCCcHHHHHHHHHHHHHcCCCcccCcEE
Confidence 3 234455655 88888888777 66776655553 4678899999999
Q ss_pred EcCCCCCCcCCCCCceEEEEecCcccee
Q 014784 349 GTGTISGPEPESLGCLLELTWNGQKPLS 376 (418)
Q Consensus 349 ~TGTp~Gvg~~~~G~~le~~~~G~~~l~ 376 (418)
+||.-.+.-+..+||.+++.++|.+.++
T Consensus 231 l~Gs~t~~v~~~~gd~~h~~~~~lG~v~ 258 (264)
T COG3971 231 LTGSFTGPVPARPGDTFHADFGGLGAVS 258 (264)
T ss_pred ecCccCccccCCCCCEEEEEecCcCceE
Confidence 9999988777777777777766666543
No 20
>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function.
Probab=98.21 E-value=2.4e-05 Score=72.69 Aligned_cols=168 Identities=14% Similarity=0.143 Sum_probs=121.1
Q ss_pred HHHHHHhccccCCCCCCCCCCCCCCCeeeecCCcccccCCCeeeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCCC
Q 014784 135 MHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGN 214 (418)
Q Consensus 135 ~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssivg~g~~I~~P~~~~~~~~~~~p~~~~s~~lDyE~ELavVIGk~~ 214 (418)
..|+.|+... |. + +| .+.|.+|--.++-+.-.. .|... ...---|+|.++|..+
T Consensus 12 ~~HI~EL~~l--GV--p-~P--s~vP~~Y~v~~~lltq~~-~i~v~----------------g~~tSGE~E~vli~~~-- 65 (194)
T PF11010_consen 12 EHHIEELAAL--GV--P-PP--SSVPLFYRVAPYLLTQAD-EIEVL----------------GEDTSGEAEPVLIRHG-- 65 (194)
T ss_pred HHHHHHHHHh--CC--C-CC--CCCCEEEEechhhCcccC-eEEec----------------cCCCCceEEEEEEEEC--
Confidence 4688888543 22 1 22 367999998877776543 33322 1233458999877764
Q ss_pred CCCCCCChhHHhhceeEEEEEEcCchhhHhhhhhCCCCCccccccCC-CCCCccccccccCCCcCCCCCCCCCCCcchhc
Q 014784 215 ELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGT-TLSPWIVTLDALEPFACDSPKQDPQPLPYLAE 293 (418)
Q Consensus 215 ~~gr~v~~eeA~~~I~Gyti~ND~SaRD~Q~~~~~~l~~~~~Ksfdt-~lGPwivt~del~~~~~~~~~~~~~~~~~~~~ 293 (418)
|+ .-.+++-|=|.|++..... ..+|.... ++++-+-..+++.+.|
T Consensus 66 --g~-----------~~v~vgSDHTDR~lE~~sV-----a~SKq~c~Kpva~~~W~~~dV~dhW---------------- 111 (194)
T PF11010_consen 66 --GE-----------LYVGVGSDHTDRKLEAYSV-----AVSKQACPKPVAREAWRLDDVADHW---------------- 111 (194)
T ss_pred --Ce-----------EEEEecCCCccchhhhcCc-----hhhhhcCCccchhhcCcHHHHHhhh----------------
Confidence 43 3489999999999986543 46787655 6888665556776644
Q ss_pred cCCceeeEEEEEEEeeCCCCCcEEEEecCCC-CCCHHHHHHHHHh-cceecCCCCEEEcCCCCCCcCCCCCceEEEEec
Q 014784 294 KISKNYDISLEVQIKPAGKEDSCVVTRSNFK-YWTLTQQLAHHTI-NGCNLRSGDLLGTGTISGPEPESLGCLLELTWN 370 (418)
Q Consensus 294 ~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t~-~~~~~~lIa~~~S-~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~ 370 (418)
+.+.|+.++..+ |++...|+++.+ +.++.++|+-+ . ....+.+|-++++||..-.|....|+.+++++.
T Consensus 112 ---D~l~Lrsw~~~d----g~~~lYQeGtla~ll~p~~ll~~~-~~~~~~~~~g~~m~~GT~~~~g~~~~a~~f~~eL~ 182 (194)
T PF11010_consen 112 ---DELELRSWITED----GERVLYQEGTLAALLPPADLLERL-GEGRGDLPEGTAMFCGTVPAIGGIRPADRFEMELE 182 (194)
T ss_pred ---hheeEEEEEeeC----CCEEEEeecchhhcCCHHHHHHhh-hccCCCCCCCEEEEEeccccccCccccceEEEEEE
Confidence 568889888654 578899999999 99999999996 5 567899999999999987777777777766553
No 21
>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.10 E-value=3.8e-05 Score=73.69 Aligned_cols=82 Identities=22% Similarity=0.280 Sum_probs=58.0
Q ss_pred eeecCCcccccCCCeeeCCCCCcCCCCCCCCCCCCCCCceeceEEE--EEEcCCCCCCCCCChhHHhhceeEEEEEEcCc
Q 014784 162 AYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMA--AVVGPGNELGKPIDVNEAADHIFGVMLMNDWS 239 (418)
Q Consensus 162 ~f~k~~ssivg~g~~I~~P~~~~~~~~~~~p~~~~s~~lDyE~ELa--vVIGk~~~~gr~v~~eeA~~~I~Gyti~ND~S 239 (418)
||.+.-+.++.+|.++..|.- ...=--|.||+ -+||.+ |. -|-.||+++|.+|
T Consensus 144 FyKG~G~~~vapGa~l~sPaF--------------AedggEEpEiaGiYlig~d---g~--------p~RlGfal~NEfS 198 (333)
T COG3802 144 FYKGDGTVAVAPGAPLPSPAF--------------AEDGGEEPEIAGIYLIGDD---GT--------PYRLGFALANEFS 198 (333)
T ss_pred EEeCCCcEEecCCCCCCChhh--------------hhccCCCceeeEEEEECCC---Cc--------eeEEeeeecchhh
Confidence 467777888889998888753 23344578886 568876 64 4678999999999
Q ss_pred hhhHhhhhhCCCCCccccccCCCCCCccccc
Q 014784 240 ARDIQAWEYVPLGPFLGKSFGTTLSPWIVTL 270 (418)
Q Consensus 240 aRD~Q~~~~~~l~~~~~Ksfdt~lGPwivt~ 270 (418)
.--..+..+ |-..++|=-..++||-|..-
T Consensus 199 DHvtEr~NY--L~LAHSKLR~as~GPEl~vG 227 (333)
T COG3802 199 DHVTERVNY--LYLAHSKLRNASFGPELLVG 227 (333)
T ss_pred hhhhhccce--EEeehhhhhccccCcceeec
Confidence 876554433 22357886666899988764
No 22
>PF10370 DUF2437: Domain of unknown function (DUF2437); InterPro: IPR018833 This entry represents the N-terminal 50 amino acids of a group of bacterial proteins often annotated as fumarylacetoacetate hydrolase-containing enzymes. In most cases these proteins also contain IPR002529 from INTERPRO, which is found towards the C terminus. ; PDB: 3RR6_A 2DFU_D 3QDF_A.
Probab=85.28 E-value=0.89 Score=33.22 Aligned_cols=26 Identities=27% Similarity=0.234 Sum_probs=19.9
Q ss_pred CCeEEEeeCCCCCceeEEEECCeEEech
Q 014784 20 LPYGVFKPEPASVARPGVAIGEYVLDLS 47 (418)
Q Consensus 20 ~~~~~~~~~~~~~~r~Gv~~~~~vvdL~ 47 (418)
|+|+-|++ ++.++.|++.|+.|.-+.
T Consensus 1 Mr~~Rf~~--~g~~~~G~l~gd~v~~l~ 26 (50)
T PF10370_consen 1 MRIVRFSH--GGEIRYGVLEGDRVRVLD 26 (50)
T ss_dssp -EEEEEEE--TTEEEEEEEETTCEEEEC
T ss_pred CeEEEEee--CCCcEEEEEECCEEEEEE
Confidence 56778866 367999999999977655
No 23
>PRK08582 hypothetical protein; Provisional
Probab=43.95 E-value=28 Score=30.92 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=38.2
Q ss_pred eecCCCCEEEcCCCCCCcCCCCCceEEEE--ecCcccee-cCCC----CCccCCCCCEEEEEEEEecCCceEeee
Q 014784 340 CNLRSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLS-LDGF----TRKFLEDGDEVTFTGFCKGNGYTVGFG 407 (418)
Q Consensus 340 ~tL~pGDvI~TGTp~Gvg~~~~G~~le~~--~~G~~~l~-~~~~----~~~~L~~GD~V~~~~~~~~~~~~~~~G 407 (418)
|.++.|++ +.|++.++.. .|..+++. +.|.-.++ +.+. ....++.||.|++.+.--...+.|.|.
T Consensus 1 m~~kvG~i-v~G~V~~I~~--fG~fV~L~~~~~GlVhiSels~~~v~~~~~~l~vGD~VkvkV~~id~~gkI~LS 72 (139)
T PRK08582 1 MSIEVGSK-LQGKVTGITN--FGAFVELPEGKTGLVHISEVADNYVKDINDHLKVGDEVEVKVLNVEDDGKIGLS 72 (139)
T ss_pred CCCcCCCE-EEEEEEEEEC--CeEEEEECCCCEEEEEeeccCcccccccccccCCCCEEEEEEEEECCCCcEEEE
Confidence 45788887 5888877654 35566553 23333332 3221 236789999999985322333556544
No 24
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=43.59 E-value=38 Score=26.59 Aligned_cols=16 Identities=19% Similarity=0.017 Sum_probs=13.7
Q ss_pred CCccCCCCCEEEEEEE
Q 014784 381 TRKFLEDGDEVTFTGF 396 (418)
Q Consensus 381 ~~~~L~~GD~V~~~~~ 396 (418)
...|+.+||.|.++.+
T Consensus 41 ~rI~I~~GD~V~Ve~s 56 (68)
T TIGR00008 41 HYIRILPGDKVKVELS 56 (68)
T ss_pred ccEEECCCCEEEEEEC
Confidence 4689999999999955
No 25
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=42.44 E-value=37 Score=27.91 Aligned_cols=16 Identities=31% Similarity=0.233 Sum_probs=13.5
Q ss_pred CCccCCCCCEEEEEEE
Q 014784 381 TRKFLEDGDEVTFTGF 396 (418)
Q Consensus 381 ~~~~L~~GD~V~~~~~ 396 (418)
...|+.+||.|.++.+
T Consensus 43 ~rIrIl~GD~V~VE~s 58 (87)
T PRK12442 43 HRIRILAGDRVTLELS 58 (87)
T ss_pred eeEEecCCCEEEEEEC
Confidence 3679999999999965
No 26
>smart00652 eIF1a eukaryotic translation initiation factor 1A.
Probab=37.08 E-value=58 Score=26.38 Aligned_cols=16 Identities=19% Similarity=0.426 Sum_probs=13.6
Q ss_pred CCccCCCCCEEEEEEE
Q 014784 381 TRKFLEDGDEVTFTGF 396 (418)
Q Consensus 381 ~~~~L~~GD~V~~~~~ 396 (418)
...|++.||.|.++.+
T Consensus 40 k~iwI~~GD~VlVe~~ 55 (83)
T smart00652 40 KKVWIRRGDIVLVDPW 55 (83)
T ss_pred ccEEEcCCCEEEEEec
Confidence 5789999999999843
No 27
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=36.52 E-value=39 Score=27.03 Aligned_cols=15 Identities=27% Similarity=0.069 Sum_probs=13.2
Q ss_pred CccCCCCCEEEEEEE
Q 014784 382 RKFLEDGDEVTFTGF 396 (418)
Q Consensus 382 ~~~L~~GD~V~~~~~ 396 (418)
..|+.|||+|.++-+
T Consensus 44 ~i~I~~GD~V~Ve~~ 58 (75)
T COG0361 44 RIRILPGDVVLVELS 58 (75)
T ss_pred eEEeCCCCEEEEEec
Confidence 689999999999854
No 28
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=34.17 E-value=46 Score=32.44 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=18.5
Q ss_pred CccCCCCCEEEEEEEEecCCceEeeeeeeeE
Q 014784 382 RKFLEDGDEVTFTGFCKGNGYTVGFGTCSGK 412 (418)
Q Consensus 382 ~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~ 412 (418)
..++++||+|+++ ++ |||+++=+
T Consensus 232 ~~~v~~Gd~v~~~--~~------glG~v~~~ 254 (255)
T TIGR03220 232 LVPVKAGDNLRVS--IG------GIGSCSVR 254 (255)
T ss_pred CeeCCCCCEEEEE--Ec------CCceEEEe
Confidence 4679999999998 56 89987643
No 29
>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=31.47 E-value=80 Score=25.17 Aligned_cols=16 Identities=25% Similarity=0.553 Sum_probs=13.7
Q ss_pred CCccCCCCCEEEEEEE
Q 014784 381 TRKFLEDGDEVTFTGF 396 (418)
Q Consensus 381 ~~~~L~~GD~V~~~~~ 396 (418)
...|+++||.|.++.+
T Consensus 35 k~iwI~~GD~V~Ve~~ 50 (77)
T cd05793 35 KRVWINEGDIVLVAPW 50 (77)
T ss_pred ccEEEcCCCEEEEEec
Confidence 4689999999999854
No 30
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=31.02 E-value=67 Score=25.08 Aligned_cols=60 Identities=22% Similarity=0.222 Sum_probs=37.1
Q ss_pred cCCCCEEEcCCCCCCcCCCCCceEEEEecCccce-ecCCCC-CccCCCCCEEEEEEE-EecCCceE
Q 014784 342 LRSGDLLGTGTISGPEPESLGCLLELTWNGQKPL-SLDGFT-RKFLEDGDEVTFTGF-CKGNGYTV 404 (418)
Q Consensus 342 L~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~~l-~~~~~~-~~~L~~GD~V~~~~~-~~~~~~~~ 404 (418)
|..|++ .+|+...+.. .|..++..++|..-+ ..++-. ...|+.||+|.+.+. ++.+.+++
T Consensus 2 l~~G~~-v~g~V~si~d--~G~~v~~g~~gv~Gfl~~~~~~~~~~~~~Gq~v~~~V~~vd~~~~~v 64 (74)
T cd05694 2 LVEGMV-LSGCVSSVED--HGYILDIGIPGTTGFLPKKDAGNFSKLKVGQLLLCVVEKVKDDGRVV 64 (74)
T ss_pred CCCCCE-EEEEEEEEeC--CEEEEEeCCCCcEEEEEHHHCCcccccCCCCEEEEEEEEEECCCCEE
Confidence 566765 7788777653 588888865554322 111111 267999999999853 23455555
No 31
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=30.81 E-value=1.4e+02 Score=27.98 Aligned_cols=55 Identities=18% Similarity=0.061 Sum_probs=37.6
Q ss_pred cCCCCEEEcCCC--CCCcCCCCCceEEEEecCcccee-------cCCC--CCccCCCCCEEEEEEE
Q 014784 342 LRSGDLLGTGTI--SGPEPESLGCLLELTWNGQKPLS-------LDGF--TRKFLEDGDEVTFTGF 396 (418)
Q Consensus 342 L~pGDvI~TGTp--~Gvg~~~~G~~le~~~~G~~~l~-------~~~~--~~~~L~~GD~V~~~~~ 396 (418)
.-|||+|++.-. .|-|....|..+.++..|.-..+ +... .+..+|.||+|--+++
T Consensus 8 v~PGd~~a~~EE~~~G~gt~~~~g~i~Aa~~G~~~~d~~n~~~~V~p~~~~~~~~K~GdiV~grV~ 73 (188)
T COG1096 8 VLPGDVLAVIEEFLPGEGTYEEGGEIRAAATGVVRRDDKNRVISVKPGKKTPPLPKGGDIVYGRVT 73 (188)
T ss_pred EcCcceeeeeeeeecCCCeEeECCEEEEeecccEEEcccceEEEeccCCCCCCCCCCCCEEEEEEe
Confidence 469999999876 56666556666666655544332 2333 4789999999987743
No 32
>COG0776 HimA Bacterial nucleoid DNA-binding protein [DNA replication, recombination, and repair]
Probab=29.32 E-value=45 Score=27.79 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=20.8
Q ss_pred ccCCCCCEEEEEEEEecCCceEeeeeeeeEEeeCC
Q 014784 383 KFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 417 (418)
Q Consensus 383 ~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~~~ 417 (418)
.-|..||.|++. |||+.+-+--++|
T Consensus 35 ~aL~~G~~V~l~----------gFG~F~v~~R~aR 59 (94)
T COG0776 35 EALAKGERVELR----------GFGTFEVRERAAR 59 (94)
T ss_pred HHHHcCCeEEEe----------eeeeeEeeccCCC
Confidence 468999999886 8999988877765
No 33
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=29.09 E-value=63 Score=25.28 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=28.1
Q ss_pred ecCCCCEEEcCCCCCCcCCCCCceEEEEec----Ccccee-cCC--C--CCccCCCCCEEEEEEE
Q 014784 341 NLRSGDLLGTGTISGPEPESLGCLLELTWN----GQKPLS-LDG--F--TRKFLEDGDEVTFTGF 396 (418)
Q Consensus 341 tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~----G~~~l~-~~~--~--~~~~L~~GD~V~~~~~ 396 (418)
+.+.||++ +|+...+.. +.+.+.+. |.-+.. +.. . ...+++.||.|++.+.
T Consensus 3 ~p~~GdiV-~G~V~~v~~----~~~~V~i~~~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~~~V~ 62 (82)
T cd04454 3 LPDVGDIV-IGIVTEVNS----RFWKVDILSRGTARLEDSSATEKDKKEIRKSLQPGDLILAKVI 62 (82)
T ss_pred CCCCCCEE-EEEEEEEcC----CEEEEEeCCCceEEeechhccCcchHHHHhcCCCCCEEEEEEE
Confidence 34789987 788766642 22222222 111111 111 1 3567899999999853
No 34
>PRK05807 hypothetical protein; Provisional
Probab=28.50 E-value=68 Score=28.27 Aligned_cols=63 Identities=21% Similarity=0.394 Sum_probs=36.3
Q ss_pred eecCCCCEEEcCCCCCCcCCCCCceEEEEecCccce---e-cCCC----CCccCCCCCEEEEEEEEecCCceEeee
Q 014784 340 CNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPL---S-LDGF----TRKFLEDGDEVTFTGFCKGNGYTVGFG 407 (418)
Q Consensus 340 ~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~~l---~-~~~~----~~~~L~~GD~V~~~~~~~~~~~~~~~G 407 (418)
|.++.|+ +.+|+..++.. .|..+++ +|..-+ + +.++ ...+++.||+|++.+.--...+.|.|-
T Consensus 1 m~~~vG~-vv~G~Vt~i~~--~GafV~L--~~~~Glvhiseis~~~v~~~~~~~kvGd~V~VkV~~id~~gkI~LS 71 (136)
T PRK05807 1 MTLKAGS-ILEGTVVNITN--FGAFVEV--EGKTGLVHISEVADTYVKDIREHLKEQDKVKVKVISIDDNGKISLS 71 (136)
T ss_pred CCccCCC-EEEEEEEEEEC--CeEEEEE--CCEEEEEEhhhcccccccCccccCCCCCEEEEEEEEECCCCcEEEE
Confidence 4567787 56888888754 4666666 332211 1 2222 246789999999884211224555443
No 35
>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins. It has been shown that S1 proteins bind RNA through their S1 domains with some degree of sequence specificity. This type of S1 domain is found in translation initiation factor 1. The solution structure of one S1 RNA-binding domain from Escherichia coli polynucleotide phosphorylase has been determined []. It displays some similarity with the cold shock domain (CSD) (IPR002059 from INTERPRO). Both the S1 and the CSD domain consist of an antiparallel beta barrel of the same topology with 5 beta strands. This fold is also shared by many other proteins of unrelated function and is known as the OB fold. However, the S1 and CSD fold can be distinguished from the other OB folds by the presence of a short 3(10) helix at the end of strand 3. This unique feature is likely to form a part of the DNA/RNA-binding site. This entry is specific for bacterial, chloroplastic and eukaryotic IF-1 type S1 domains.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1JT8_A 3I4O_A 1AH9_A 1ZO1_W 1D7Q_A 2OQK_A 2DGY_A 1HR0_W.
Probab=27.95 E-value=43 Score=25.59 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=10.3
Q ss_pred CCccCCCCCEEEEEE
Q 014784 381 TRKFLEDGDEVTFTG 395 (418)
Q Consensus 381 ~~~~L~~GD~V~~~~ 395 (418)
...|++.||.|.++.
T Consensus 38 ~~iwI~~GD~V~V~~ 52 (65)
T PF01176_consen 38 KRIWIKRGDFVLVEP 52 (65)
T ss_dssp TCC---TTEEEEEEE
T ss_pred eeEecCCCCEEEEEe
Confidence 578999999999984
No 36
>PRK04012 translation initiation factor IF-1A; Provisional
Probab=25.65 E-value=1e+02 Score=25.94 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=13.7
Q ss_pred CCccCCCCCEEEEEEE
Q 014784 381 TRKFLEDGDEVTFTGF 396 (418)
Q Consensus 381 ~~~~L~~GD~V~~~~~ 396 (418)
...|+++||.|.++.+
T Consensus 56 k~IwI~~GD~VlVe~~ 71 (100)
T PRK04012 56 KRMWIREGDVVIVAPW 71 (100)
T ss_pred ccEEecCCCEEEEEec
Confidence 4689999999999854
No 37
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain. IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.
Probab=25.57 E-value=1.2e+02 Score=24.16 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=13.5
Q ss_pred CCccCCCCCEEEEEEE
Q 014784 381 TRKFLEDGDEVTFTGF 396 (418)
Q Consensus 381 ~~~~L~~GD~V~~~~~ 396 (418)
...|++.||.|.++.+
T Consensus 35 k~iwI~~GD~VlV~~~ 50 (78)
T cd04456 35 KNIWIKRGDFLIVDPI 50 (78)
T ss_pred cCEEEcCCCEEEEEec
Confidence 4589999999999844
No 38
>PRK04980 hypothetical protein; Provisional
Probab=24.08 E-value=1.6e+02 Score=24.93 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=20.3
Q ss_pred ecCccceecCCCCCccCCCCCEEEEE
Q 014784 369 WNGQKPLSLDGFTRKFLEDGDEVTFT 394 (418)
Q Consensus 369 ~~G~~~l~~~~~~~~~L~~GD~V~~~ 394 (418)
+.|+++++++++....+++||+|.+.
T Consensus 16 LsGkKTiTiRd~se~~~~~G~~~~V~ 41 (102)
T PRK04980 16 LAGRKTITIRDESESHFKPGDVLRVG 41 (102)
T ss_pred HcCCceEEeeCCcccCCCCCCEEEEE
Confidence 45788888776655688999999874
No 39
>COG3097 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.00 E-value=85 Score=26.25 Aligned_cols=32 Identities=13% Similarity=0.282 Sum_probs=23.4
Q ss_pred ecCccceecCCCCCccCCCCCEEEEEEEEecCC
Q 014784 369 WNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNG 401 (418)
Q Consensus 369 ~~G~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~ 401 (418)
+.|++++++++......++||++++- +.++++
T Consensus 17 lagrKTITIRD~SEShf~~g~vlrV~-r~Ed~~ 48 (106)
T COG3097 17 LAGRKTITIRDKSESHFKPGDVLRVG-RFEDDR 48 (106)
T ss_pred hCCCceEEEeccchhcCCCCCEEEEE-EecCCc
Confidence 35788888877755678999999985 445443
No 40
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=23.69 E-value=81 Score=23.89 Aligned_cols=50 Identities=24% Similarity=0.291 Sum_probs=28.4
Q ss_pred CCCCEEEcCCCCCCcCCCCCceEEEE----ecCcccee-cCCC----CCccCCCCCEEEEEE
Q 014784 343 RSGDLLGTGTISGPEPESLGCLLELT----WNGQKPLS-LDGF----TRKFLEDGDEVTFTG 395 (418)
Q Consensus 343 ~pGDvI~TGTp~Gvg~~~~G~~le~~----~~G~~~l~-~~~~----~~~~L~~GD~V~~~~ 395 (418)
+.|++ .+|+..++.. .|+.+++. ++|.-+.+ +... +...++.||+|++.+
T Consensus 2 ~~G~~-~~g~V~~v~~--~g~~v~l~~~~~~~gll~~s~l~~~~~~~~~~~~~~Gd~v~vkv 60 (76)
T cd04452 2 EEGEL-VVVTVKSIAD--MGAYVSLLEYGNIEGMILLSELSRRRIRSIRKLVKVGRKEVVKV 60 (76)
T ss_pred CCCCE-EEEEEEEEEc--cEEEEEEcCCCCeEEEEEhHHcCCcccCCHHHeeCCCCEEEEEE
Confidence 34554 3677666543 46777663 33333332 3221 345689999999874
No 41
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=23.11 E-value=44 Score=25.32 Aligned_cols=51 Identities=25% Similarity=0.480 Sum_probs=32.2
Q ss_pred cCCCCEEEcCCCCCCcCCCCCceEEEE--ecCcccee-cCC---C-CCccCCCCCEEEEEE
Q 014784 342 LRSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLS-LDG---F-TRKFLEDGDEVTFTG 395 (418)
Q Consensus 342 L~pGDvI~TGTp~Gvg~~~~G~~le~~--~~G~~~l~-~~~---~-~~~~L~~GD~V~~~~ 395 (418)
++.||++ +|+...+.. .|..+++. ++|.-+.+ +.. . +...++.||.|++.+
T Consensus 2 ~~~G~iv-~g~V~~v~~--~g~~V~l~~~~~g~ip~~~l~~~~~~~~~~~~~~G~~v~v~v 59 (74)
T PF00575_consen 2 LKEGDIV-EGKVTSVED--FGVFVDLGNGIEGFIPISELSDDRIDDPSEVYKIGQTVRVKV 59 (74)
T ss_dssp SSTTSEE-EEEEEEEET--TEEEEEESTSSEEEEEGGGSSSSEESSSHGTCETTCEEEEEE
T ss_pred CCCCCEE-EEEEEEEEC--CEEEEEECCcEEEEEEeehhcCccccccccccCCCCEEEEEE
Confidence 5677776 788776654 46666664 22222332 332 1 568999999999885
No 42
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=23.10 E-value=1.1e+02 Score=25.11 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=16.0
Q ss_pred cceecCCCCEEEcCCCCCC
Q 014784 338 NGCNLRSGDLLGTGTISGP 356 (418)
Q Consensus 338 ~~~tL~pGDvI~TGTp~Gv 356 (418)
+.-||+.||.|..||-.|.
T Consensus 23 ~~GtL~~Gd~iv~G~~~Gk 41 (95)
T cd03701 23 QNGTLKKGDVIVAGGTYGK 41 (95)
T ss_pred EcCeEecCCEEEECCccce
Confidence 3459999999999998775
No 43
>PF03143 GTP_EFTU_D3: Elongation factor Tu C-terminal domain; InterPro: IPR004160 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents the C-terminal domain, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA and to EF1B (or EF-Ts, IPR001816 from INTERPRO) []. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1TUI_C 1OB5_E 1TTT_B 1B23_P 1EFT_A 3E20_E 1R5B_A 1R5O_A 1R5N_A 3AGJ_C ....
Probab=21.02 E-value=2.2e+02 Score=23.24 Aligned_cols=50 Identities=16% Similarity=0.118 Sum_probs=32.3
Q ss_pred CCCEEEcCCCCCCcCCCCCceEEEEecCccceecCCCCCccCCCCCEEEEEEEEecCCceEeeeeeeeE
Q 014784 344 SGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGK 412 (418)
Q Consensus 344 pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~ 412 (418)
+|+.. +..+..||...+.+.=. .+.+|+.++.+ .+..++.+||.|..++-
T Consensus 49 ~~~~~-------p~~l~~g~~a~v~l~~~--------~pi~ve~~~Rf----~lR~~~~Tia~G~V~~v 98 (99)
T PF03143_consen 49 TGKKK-------PKFLKPGDRAVVELEFQ--------KPICVEPFSRF----ILRDGGKTIAVGVVTKV 98 (99)
T ss_dssp TTTEE--------SEB-TTEEEEEEEEEE--------EEEEETTTTEE----EEEETTEEEEEEEEEEE
T ss_pred ccccc-------ccccccccccccceeec--------cceeeecCceE----EEccCCeEEEEEEEEEe
Confidence 66655 44566788777654322 35688888844 35567889999988764
No 44
>PRK00276 infA translation initiation factor IF-1; Validated
Probab=20.13 E-value=2.4e+02 Score=21.89 Aligned_cols=16 Identities=25% Similarity=0.009 Sum_probs=12.8
Q ss_pred CccCCCCCEEEEEEEE
Q 014784 382 RKFLEDGDEVTFTGFC 397 (418)
Q Consensus 382 ~~~L~~GD~V~~~~~~ 397 (418)
..++..||.|+++.+.
T Consensus 44 ~i~i~vGD~V~ve~~~ 59 (72)
T PRK00276 44 YIRILPGDKVTVELSP 59 (72)
T ss_pred CcccCCCCEEEEEEcc
Confidence 4678999999998543
Done!