Query 014784
Match_columns 418
No_of_seqs 235 out of 2028
Neff 6.4
Searched_HMMs 13730
Date Mon Mar 25 17:46:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014784.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014784hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1hyoa2 d.177.1.1 (A:119-416) 100.0 5.1E-75 3.7E-79 569.7 20.8 293 125-417 3-298 (298)
2 d1nr9a_ d.177.1.1 (A:) Putativ 100.0 6.2E-52 4.5E-56 390.5 17.8 204 115-414 9-220 (221)
3 d1sawa_ d.177.1.1 (A:) FAHD1 ( 100.0 3.1E-51 2.3E-55 384.8 16.8 191 134-416 20-215 (217)
4 d1gtta1 d.177.1.1 (A:1-213) 4- 100.0 2.7E-50 2E-54 377.2 17.9 192 134-417 12-207 (213)
5 d1gtta2 d.177.1.1 (A:214-429) 100.0 9.6E-50 7E-54 374.4 16.4 204 120-416 2-212 (216)
6 d1nkqa_ d.177.1.1 (A:) Hypothe 100.0 3.5E-47 2.5E-51 365.2 16.9 214 134-416 18-249 (257)
7 d1hyoa1 b.34.8.1 (A:1-118) Fum 99.9 1.7E-23 1.3E-27 176.9 10.9 118 4-122 1-118 (118)
8 d1sv6a_ d.177.1.1 (A:) 2-keto- 99.6 2.4E-16 1.8E-20 148.8 9.4 154 158-357 75-237 (261)
9 d1sroa_ b.40.4.5 (A:) S1 RNA-b 47.8 3.6 0.00026 29.4 1.7 52 341-395 2-60 (76)
10 d2c78a2 b.44.1.1 (A:313-405) E 46.4 14 0.001 27.6 5.0 49 353-413 44-92 (93)
11 d3bzka4 b.40.4.5 (A:637-730) T 43.7 5 0.00037 29.8 2.0 66 338-406 12-85 (94)
12 d2ahob2 b.40.4.5 (B:1-84) Euka 43.0 2.3 0.00017 30.9 -0.0 63 341-406 8-80 (84)
13 d1sv6a_ d.177.1.1 (A:) 2-keto- 41.3 13 0.00093 32.0 4.8 54 343-413 187-259 (261)
14 d2ba0a1 b.40.4.5 (A:53-135) S1 39.8 8.9 0.00065 27.4 2.9 61 343-406 4-72 (83)
15 d1kl9a2 b.40.4.5 (A:3-88) Euka 34.6 14 0.001 26.5 3.3 61 343-406 12-82 (86)
16 d1d2ea2 b.44.1.1 (A:349-451) E 30.9 37 0.0027 25.5 5.3 49 354-415 45-93 (103)
17 d1ah9a_ b.40.4.5 (A:) Translat 29.8 19 0.0014 25.4 3.2 15 382-396 43-57 (71)
18 d1uwva1 b.40.4.12 (A:15-74) rR 25.7 27 0.0019 23.4 3.2 31 384-416 29-59 (60)
19 d2je6i2 b.84.4.2 (I:7-65) Exos 22.2 19 0.0014 24.6 1.8 12 341-352 10-21 (59)
No 1
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00 E-value=5.1e-75 Score=569.71 Aligned_cols=293 Identities=60% Similarity=1.152 Sum_probs=269.4
Q ss_pred cCCcceeeccHHHHHHhccccCCCCCCCCCCCCCCCeeeecCCcccccCCCeeeCCCCCcCCCCCCCCCCCCCCCceece
Q 014784 125 IGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFEL 204 (418)
Q Consensus 125 ~~~~~~~~~~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssivg~g~~I~~P~~~~~~~~~~~p~~~~s~~lDyE~ 204 (418)
+.+|+||||+++|++++|+.|+++.++++|+|++.|++|+|++||+++++++|.+|.+++.+..+..|.++++++||||+
T Consensus 3 ~~~~~Df~~~~~Ha~~~~~~~r~~~~~lpp~~~~~Pv~f~~~~ssivg~g~~I~~P~g~~~~~~~~~p~~~~s~~lDyE~ 82 (298)
T d1hyoa2 3 IGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMEL 82 (298)
T ss_dssp CSCEEEECCCHHHHHHHHHHHHCGGGCSCTTTTTSCCEEECCSTTEEETTCCEECCEEEECSCTTSCCEEEECSCEECBE
T ss_pred ccccceeccHHHHHHHHHHhhcCCCCCCCcccccCCCEEcCCCCeEECCCCCEeCCCcceecCccCCCccCcccceeeec
Confidence 46899999999999999998888777889999999999999999999999999999876554444456667799999999
Q ss_pred EEEEEEcCCCCCCCCCChhHHhhceeEEEEEEcCchhhHhhhhhCCCCCccccccCCCCCCccccccccCCCcCCCCCCC
Q 014784 205 EMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQD 284 (418)
Q Consensus 205 ELavVIGk~~~~gr~v~~eeA~~~I~Gyti~ND~SaRD~Q~~~~~~l~~~~~Ksfdt~lGPwivt~del~~~~~~~~~~~ 284 (418)
||||||||++..||+|++++|++||+||||+||||+||+|..++.+++|++||+|+|++||||||++++.++....+..+
T Consensus 83 EL~vVIG~~~~~g~~i~~e~A~d~I~Gyti~NDvSaRd~Q~~~~~~~~~~~gK~f~tpiGP~ivt~~~l~p~~~~~~~~d 162 (298)
T d1hyoa2 83 EMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQD 162 (298)
T ss_dssp EEEEEECSCCCTTCCCCHHHHGGGEEEEEEEECCEEHHHHHHHCTTTCCCHHHHTCEEECSCBEEHHHHGGGEECCCCCS
T ss_pred eEEEEEecccccCccCCHHHHHHHHHHHhhhhhhhHHHHHHhhccCCCcccccCCCCCCCCeEccchhcCcccccccccC
Confidence 99999999877799999999999999999999999999999998889999999999999999999999998887767777
Q ss_pred CCCCcchhccCCceeeEEEEEEEeeCCCCCcEEEEecCCC--CCCHHHHHHHHHhcceecCCCCEEEcCCCCCCcCCCCC
Q 014784 285 PQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLG 362 (418)
Q Consensus 285 ~~~~~~~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t~--~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G 362 (418)
+....+++|..++.++|+|++++|+....||+.+|++|++ +|+++|+|+|++|++|||+|||||+||||+|+++++.|
T Consensus 163 p~~~~~~~~~~~~~~dl~l~~~lng~~~~ng~~~q~~nt~dMif~~~e~Ia~~~S~~~tL~pGDlI~TGTP~G~~~~~~G 242 (298)
T d1hyoa2 163 PKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFG 242 (298)
T ss_dssp SCCCGGGCCCSCCEECCEEEEEEECTTCSSCEEEEEEETTCCSSCHHHHHHHHHTTSCCCCTTCEEECCCCCCSSGGGCC
T ss_pred ccccccccccCCCCccceEEEEEEEEEeecCeEEecCcHHhcCCCHHHHHHHHHhCceeechhhEEEecCCCCCCCCCCC
Confidence 7888899998888888888888887766799999999988 99999999997689999999999999999999999999
Q ss_pred ceEEEEecCccceecCCC-CCccCCCCCEEEEEEEEecCCceEeeeeeeeEEeeCC
Q 014784 363 CLLELTWNGQKPLSLDGF-TRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 417 (418)
Q Consensus 363 ~~le~~~~G~~~l~~~~~-~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~~~ 417 (418)
|.+|++++|++++++..+ +++|||+||+|+||++|+.+|.+||||+|+|+|+||.
T Consensus 243 d~le~~~~G~~~i~~~~g~~~~~L~~GD~V~ie~~~~~~g~~igfG~~~~~v~pa~ 298 (298)
T d1hyoa2 243 SMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPAL 298 (298)
T ss_dssp BHHHHTTTTTSCEECSTTCEESSCCTTCEEEEEEEEECSSCEEEEEEEEEEEECCC
T ss_pred cEEEEEecccceeecCCCCCcccCCCCCEEEEEEEEcCCCceEeccceEEEEecCC
Confidence 999999999999998877 6789999999999999999999999999999999984
No 2
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=6.2e-52 Score=390.48 Aligned_cols=204 Identities=20% Similarity=0.219 Sum_probs=170.3
Q ss_pred CCceEcCCcccCCcceeec---cHHHHHHhccccCCCCCCCCCCCCCCCeeeecCCcccccCCCeeeCCCCCcCCCCCCC
Q 014784 115 GKVEMLLPMEIGDYTDFFS---SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSP 191 (418)
Q Consensus 115 ~~v~ll~Pv~~~~~~~~~~---~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssivg~g~~I~~P~~~~~~~~~~~ 191 (418)
+...+..|+. .++|+ |++|++|+|.. . ++.|++|+|+++++++++++|.+|..
T Consensus 9 ~g~~~~~Pv~----kI~cvg~NY~~H~~E~~~~--------~---p~~P~~F~K~~~al~g~~~~I~~p~~--------- 64 (221)
T d1nr9a_ 9 QGALLDYPVS----KVVCVGSNYAKHIKEMGSA--------V---PEEPVLFIKPETALCDLRQPLAIPSD--------- 64 (221)
T ss_dssp TSCBCSCCCC----CEEEESCCBC---------------------CCCCCEEEECGGGEEETTSCBCCCSS---------
T ss_pred CCCcccCCCc----cEEEEeccHHHHHHHHCCC--------C---CCCCEEEEECchhhcCCCcccccccc---------
Confidence 3334445653 24444 78999999753 1 25799999999999999999999875
Q ss_pred CCCCCCCCceeceEEEEEEcCCCCCCCCCChhHHhhceeEEEEEEcCchhhHhhhhhC-CCCCccccccCCC--CCCccc
Q 014784 192 PPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLGKSFGTT--LSPWIV 268 (418)
Q Consensus 192 p~~~~s~~lDyE~ELavVIGk~~~~gr~v~~eeA~~~I~Gyti~ND~SaRD~Q~~~~~-~l~~~~~Ksfdt~--lGPwiv 268 (418)
+..+|||+||++||||+ |+++++++|++||+|||++||||+||+|.+++. +++|.++|+||++ +|||++
T Consensus 65 -----~~~ld~E~EL~vvigk~---~~~i~~~~A~~~I~Gyti~ND~T~Rd~q~~~~~~~~~~~~~K~~d~~~p~Gp~i~ 136 (221)
T d1nr9a_ 65 -----FGSVHHEVELAVLIGAT---LRQATEEHVRKAIAGYGVALDLTLRDVQGKMKKAGQPWEKAKAFDNSCPLSGFIP 136 (221)
T ss_dssp -----SSCEEECEEEEEEECSC---BSSCCHHHHHHHEEEEEEEECCBCHHHHHHHHHHTCCSHHHHSSTTCEEECCBEE
T ss_pred -----cceeeecccEEEEeccc---cceeeccccchhhheeeeeeeeeeehhhhhhhhcccccccCcccCCccccceeee
Confidence 67899999999999999 999999999999999999999999999987764 5789999999997 999999
Q ss_pred cccccCCCcCCCCCCCCCCCcchhccCCceeeEEEEEEEeeCCCCCcEEEEecCCC--CCCHHHHHHHHHhcceecCCCC
Q 014784 269 TLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGD 346 (418)
Q Consensus 269 t~del~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t~--~~~~~~lIa~~~S~~~tL~pGD 346 (418)
+.+++++ +.++.|+++| ||+++|+++++ +|+++|+|+|+ |+++||+|||
T Consensus 137 ~~~~~~d--------------------~~~l~i~~~v--------NGe~~Q~~~t~~Mi~~~~elI~~l-S~~~tL~pGD 187 (221)
T d1nr9a_ 137 AAEFTGD--------------------PQNTTLSLSV--------NGEQRQQGTTADMIHKIVPLIAYM-SKFFTLKAGD 187 (221)
T ss_dssp GGGCCSC--------------------GGGCEEEEEE--------TTEEEEEEEGGGBSSCHHHHHHHH-TTTSCBCTTC
T ss_pred eeeccCC--------------------CcccEEEEEE--------CCEEEEecccccccCCHHHHHHHH-hCCCEECCCC
Confidence 9988764 4678999998 99999999999 99999999997 9999999999
Q ss_pred EEEcCCCCCCcCCCCCceEEEEecCccceecCCCCCccCCCCCEEEEEEEEecCCceEeeeeeeeEEe
Q 014784 347 LLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIV 414 (418)
Q Consensus 347 vI~TGTp~Gvg~~~~G~~le~~~~G~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~ 414 (418)
||+||||+|+| +|++||+|+++ ++ | |+|+|+||
T Consensus 188 iI~TGTP~Gvg--------------------------~l~~GD~v~~~--ie------G-~~l~n~vv 220 (221)
T d1nr9a_ 188 VVLTGTPDGVG--------------------------PLQSGDELTVT--FD------G-HSLTTRVL 220 (221)
T ss_dssp EEECCCCSCCE--------------------------EECTTCEEEEE--ET------T-EEEEEEBC
T ss_pred EEEcCCCCCCc--------------------------cCCCCCEEEEE--EE------C-CEEEEEEe
Confidence 99999999975 57999999887 66 7 78999986
No 3
>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=3.1e-51 Score=384.76 Aligned_cols=191 Identities=21% Similarity=0.279 Sum_probs=164.3
Q ss_pred cHHHHHHhccccCCCCCCCCCCCCCCCeeeecCCcccccCCCeeeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCC
Q 014784 134 SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPG 213 (418)
Q Consensus 134 ~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssivg~g~~I~~P~~~~~~~~~~~p~~~~s~~lDyE~ELavVIGk~ 213 (418)
|.+|++|+|.. . ++.|++|+|+++++++++++|.+|.. +.++|||+|||+||||.
T Consensus 20 Y~~H~~E~~~~--------~---p~~P~~F~K~~~s~~~~~~~i~~P~~--------------~~~ld~E~ELavvig~~ 74 (217)
T d1sawa_ 20 YADHVREMRSA--------V---LSEPVLFLKPSTAYAPEGSPILMPAY--------------TRNLHHELELGVVMGKR 74 (217)
T ss_dssp BC----------------------CCCCEEEEEGGGEEETTSCEECCTT--------------CSCEEECEEEEEEESSC
T ss_pred HHHHHHHHCCC--------C---CCCCeEEecChhhccCCCCceeCCcc--------------cceeeeecceEEEeeee
Confidence 78999999753 1 25699999999999999999999875 78999999999999999
Q ss_pred CCCCCCCChhHHhhceeEEEEEEcCchhhHhhhhhC-CCCCccccccCCC--CCCccccccccCCCcCCCCCCCCCCCcc
Q 014784 214 NELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPY 290 (418)
Q Consensus 214 ~~~gr~v~~eeA~~~I~Gyti~ND~SaRD~Q~~~~~-~l~~~~~Ksfdt~--lGPwivt~del~~~~~~~~~~~~~~~~~ 290 (418)
+++|++++|++||+|||++||||+||+|..++. +++|.+||+||++ +||| |+.|++.+
T Consensus 75 ---~~~v~~~~A~~~I~Gyti~nDvt~Rd~q~~~~~~~~~~~~~K~~d~~~p~Gp~-v~~d~~~d--------------- 135 (217)
T d1sawa_ 75 ---CRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAF-VPKEKIPD--------------- 135 (217)
T ss_dssp ---BCSCCTTTGGGSEEEEEEEECCEEHHHHHHHHHHTCCSHHHHCSTTCEEECCC-EETTSCSC---------------
T ss_pred ---eceeehhhHhhccccceeeeeechhHHHHHHhhcCCCccccccccCcCcceeE-EEHHHCCC---------------
Confidence 999999999999999999999999999987764 5889999999997 9998 46777765
Q ss_pred hhccCCceeeEEEEEEEeeCCCCCcEEEEecCCC--CCCHHHHHHHHHhcceecCCCCEEEcCCCCCCcCCCCCceEEEE
Q 014784 291 LAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELT 368 (418)
Q Consensus 291 ~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t~--~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~ 368 (418)
+.+++|+++| ||+++|+++++ +|+++|||+|+ |+++||+|||||+||||+|++
T Consensus 136 -----~~~l~i~~~V--------NGe~~Q~~~t~~mi~~~~eli~~l-S~~~tL~pGDvI~TGTP~Gvg----------- 190 (217)
T d1sawa_ 136 -----PHKLKLWLKV--------NGELRQEGETSSMIFSIPYIISYV-SKIITLEEGDIILTGTPKGVG----------- 190 (217)
T ss_dssp -----TTSCEEEEEE--------TTEEEEEEEGGGBSSCHHHHHHHH-HTTSCBCTTCEEECCCCSCCE-----------
T ss_pred -----ccceEEEEEE--------CCEEEEeCChHHhcccHHHHHHHH-hCCceECCCcEEEcCCCCCCc-----------
Confidence 3568899999 99999999999 99999999997 999999999999999999974
Q ss_pred ecCccceecCCCCCccCCCCCEEEEEEEEecCCceEeeeeeeeEEeeC
Q 014784 369 WNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 416 (418)
Q Consensus 369 ~~G~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~~ 416 (418)
.||+||+|+++ ++ |+|+|+|+|...
T Consensus 191 ---------------~l~~GD~v~~~--i~------glG~l~n~V~~~ 215 (217)
T d1sawa_ 191 ---------------PVKENDEIEAG--IH------GLVSMTFKVEKP 215 (217)
T ss_dssp ---------------EECTTCEEEEE--ET------TTEEEEEEEECC
T ss_pred ---------------cCCCCCEEEEE--EC------CeeeEEEEEeCC
Confidence 47999999998 66 999999999854
No 4
>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=2.7e-50 Score=377.16 Aligned_cols=192 Identities=18% Similarity=0.172 Sum_probs=168.7
Q ss_pred cHHHHHHhccccCCCCCCCCCCCCCCCeeeecCCcccccCCCeeeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCC
Q 014784 134 SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPG 213 (418)
Q Consensus 134 ~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssivg~g~~I~~P~~~~~~~~~~~p~~~~s~~lDyE~ELavVIGk~ 213 (418)
|++|++|++..+...... ..++.|++|+|+++++++++++|.+|. +.++|||+||||||||.
T Consensus 12 Y~~h~~e~~~~~~~~p~~---~~p~~P~~F~K~~~s~~g~g~~I~~P~---------------~~~~~~E~ELavVIgk~ 73 (213)
T d1gtta1 12 HRSQLDAWQEAFQQSPYK---APPKTAVWFIKPRNTVIGCGEPIPFPQ---------------GEKVLSGATVALIVGKT 73 (213)
T ss_dssp BHHHHHHHTTGGGSTTTC---SCCSSCEEEEECGGGEECTTCCEEECT---------------TCCEECCEEEEEEECSC
T ss_pred hHHHHHHHhhhhhcCccc---CCCCCCEEEEcchHHeeCCCCcEEEec---------------cceeeeeeeEEEEeecc
Confidence 889999999765321111 224789999999999999999999986 35799999999999999
Q ss_pred CCCCCCCChhHHhhceeEEEEEEcCchhhHhhhhhCCCCCccccccCCC--CCCccccccccCCCcCCCCCCCCCCCcch
Q 014784 214 NELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALEPFACDSPKQDPQPLPYL 291 (418)
Q Consensus 214 ~~~gr~v~~eeA~~~I~Gyti~ND~SaRD~Q~~~~~~l~~~~~Ksfdt~--lGPwivt~del~~~~~~~~~~~~~~~~~~ 291 (418)
|++|+++||++||+|||++||||+||+|.+. +|++||+||++ +|||+++.+
T Consensus 74 ---~~~i~~~~A~~~I~Gyti~nD~T~rd~~~~~----~~~~~K~~d~~~p~Gp~i~~~~-------------------- 126 (213)
T d1gtta1 74 ---ATKVREEDAAEYIAGYALANDVSLPEESFYR----PAIKAKCRDGFCPIGETVALSN-------------------- 126 (213)
T ss_dssp ---BSSCCGGGGGGGEEEEEEEECCBSCCCCSSS----CCHHHHCSTTCEEBCCCBCCSC--------------------
T ss_pred ---cccchhhhhHHHHHHHHhhhccchHhhhhhh----hccccccceecccceeeEeecc--------------------
Confidence 9999999999999999999999999988653 68999999997 999998632
Q ss_pred hccCCceeeEEEEEEEeeCCCCCcEEEEecCCC--CCCHHHHHHHHHhcceecCCCCEEEcCCCCCCcCCCCCceEEEEe
Q 014784 292 AEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTW 369 (418)
Q Consensus 292 ~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t~--~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~ 369 (418)
+.++.|+++| ||+++|+++++ +|++++||+|+ |+++||+|||||+||||+|+
T Consensus 127 ----~~~l~i~~~v--------NGe~~Q~~~t~~mi~~~~~lI~~l-S~~~tL~pGDvI~TGTP~g~------------- 180 (213)
T d1gtta1 127 ----VDNLTIYTEI--------NGRPADHWNTADLQRNAAQLLSAL-SEFATLNPGDAILLGTPQAR------------- 180 (213)
T ss_dssp ----CTTCEEEEEE--------TTEEEEEEEGGGBSSCHHHHHHHH-HTTSCBCTTCEEECCCCSCC-------------
T ss_pred ----ceeEEEEEEe--------ccccccccccccccCCHHHHHHHH-hCCCCcCCCCEEEeCCcCCC-------------
Confidence 1357888988 99999999998 99999999997 99999999999999999885
Q ss_pred cCccceecCCCCCccCCCCCEEEEEEEEecCCceEeeeeeeeEEeeCC
Q 014784 370 NGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST 417 (418)
Q Consensus 370 ~G~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~~~ 417 (418)
.||++||+|+++ |+ |||+|+|+|+.++
T Consensus 181 -------------~~l~~GD~v~~~--ie------glG~l~n~Vv~e~ 207 (213)
T d1gtta1 181 -------------VEIQPGDRVRVL--AE------GFPPLENPVVDER 207 (213)
T ss_dssp -------------CEECTTCEEEEE--ET------TSCCEEEEEEEGG
T ss_pred -------------ccCCCCCEEEEE--Ec------CceEEEEEEEecc
Confidence 478999999998 66 9999999999764
No 5
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=9.6e-50 Score=374.45 Aligned_cols=204 Identities=22% Similarity=0.271 Sum_probs=172.7
Q ss_pred cCCcccCCcceeec---cHHHHHHhccccCCCCCCCCCCCCCCCeeeecCCcccccCCCeeeCCCCCcCCCCCCCCCCCC
Q 014784 120 LLPMEIGDYTDFFS---SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGP 196 (418)
Q Consensus 120 l~Pv~~~~~~~~~~---~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssivg~g~~I~~P~~~~~~~~~~~p~~~~ 196 (418)
++|++.|.-.++|+ |.+|++|++.. . ++.|++|+|+++++++++++|.+|..
T Consensus 2 ~p~~p~p~~~I~cvg~Ny~~H~~E~~~~--------~---p~~P~~F~Kp~ssl~g~~~~i~~P~~-------------- 56 (216)
T d1gtta2 2 FPTLPHPHGTLFALGLNYADHASELEFK--------P---PEEPLVFLKAPNTLTGDNQTSVRPNN-------------- 56 (216)
T ss_dssp CCCCSSSCSCEEEESSCBCCC-------------------CCSCCEEEECGGGEECTTEEEEECTT--------------
T ss_pred CCCCCCCCCCEEEEEccHHHHHHHhCCC--------C---CCCCEEEEEecccccCCCcccccccc--------------
Confidence 46777664234554 78999999753 1 25799999999999999999999975
Q ss_pred CCCceeceEEEEEEcCCCCCCCCCChhHHhhceeEEEEEEcCchhhHhhhhhCCCCCccccccCCC--CCCccccccccC
Q 014784 197 SQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTT--LSPWIVTLDALE 274 (418)
Q Consensus 197 s~~lDyE~ELavVIGk~~~~gr~v~~eeA~~~I~Gyti~ND~SaRD~Q~~~~~~l~~~~~Ksfdt~--lGPwivt~del~ 274 (418)
+.++|||+||++||||+ |++++.++|++||+|||++||+|+||+|.+.+ ..|..+|+|+++ +|||+++.|+..
T Consensus 57 ~~~ld~E~EL~vvigk~---~~~i~~~~a~~~I~Gy~i~nD~t~rd~~~~~~--~~~~~~k~~~~~~~~~p~~~~~d~~~ 131 (216)
T d1gtta2 57 IEYMHYEAELVVVIGKQ---ARNVSEADAMDYVAGYTVCNDYAIRDYLENYY--RPNLRVKSRDGLTPMLSTIVPKEAIP 131 (216)
T ss_dssp CSCEECCEEEEEEECSC---BSSCCTTTGGGGEEEEEEEECCEEGGGCCSSS--SSCHHHHSCTTCEEBCSCCEEGGGCS
T ss_pred cceEEeeceEEEEEecc---ceeecHHHhhhheeeeeccccccchhhhhccc--ccccccccccccccccccccchhhcC
Confidence 68999999999999999 99999999999999999999999999997654 457889999996 999999988765
Q ss_pred CCcCCCCCCCCCCCcchhccCCceeeEEEEEEEeeCCCCCcEEEEecCCC--CCCHHHHHHHHHhcceecCCCCEEEcCC
Q 014784 275 PFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTGT 352 (418)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t~--~~~~~~lIa~~~S~~~tL~pGDvI~TGT 352 (418)
+ +.++.|+++| ||+++|+++++ +|+++++|+|+ |+++||+|||||+|||
T Consensus 132 d--------------------~~~l~i~~~v--------Ng~~~Q~~~t~~Mi~~~~~li~~l-S~~~tL~pGDvI~TGT 182 (216)
T d1gtta2 132 D--------------------PHNLTLRTFV--------NGELRQQGTTADLIFSVPFLIAYL-SEFMTLNPGDMIATGT 182 (216)
T ss_dssp C--------------------TTSCEEEEEE--------TTEEEEEEEGGGBSSCHHHHHHHH-HTTSCBCTTCEEECCC
T ss_pred C--------------------cCceEEEEEE--------CCEEEecCcHHHhccCHHHHHHHH-hCCCCcCCCCEEEeCC
Confidence 4 3568888888 99999999998 99999999997 9999999999999999
Q ss_pred CCCCcCCCCCceEEEEecCccceecCCCCCccCCCCCEEEEEEEEecCCceEeeeeeeeEEeeC
Q 014784 353 ISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 416 (418)
Q Consensus 353 p~Gvg~~~~G~~le~~~~G~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~~ 416 (418)
|+|++ +|++||+|+++ |+ |+|+|+|+||..
T Consensus 183 P~Gvg--------------------------~l~~GD~ve~~--i~------giG~L~n~vv~e 212 (216)
T d1gtta2 183 PKGLS--------------------------DVVPGDEVVVE--VE------GVGRLVNRIVSE 212 (216)
T ss_dssp CSCCC--------------------------BCCTTCEEEEE--ET------TTEEEEEEEEEH
T ss_pred CCCcc--------------------------CCCCCCEEEEE--Ec------CceEEEEEEEec
Confidence 99974 68999999998 66 999999999863
No 6
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=3.5e-47 Score=365.18 Aligned_cols=214 Identities=21% Similarity=0.156 Sum_probs=166.6
Q ss_pred cHHHHHHhccccCCCCCCCCCCCCCCCeeeecCCcccccCCCeeeCCCCCc----CC-----CCCC-CCCCCCCCCceec
Q 014784 134 SMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQF----AP-----SGNS-PPPFGPSQKLDFE 203 (418)
Q Consensus 134 ~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssivg~g~~I~~P~~~~----~~-----~~~~-~p~~~~s~~lDyE 203 (418)
|.+|++|+|.. . ++.|++|+|+++|++++++.+.++.... .. ..+. +..++.+.++|||
T Consensus 18 Y~~Ha~E~g~~--------~---p~~P~~F~Kp~ssl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~p~~~~ld~E 86 (257)
T d1nkqa_ 18 YAAHIKELNNS--------T---PKQPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPRGVKVHHE 86 (257)
T ss_dssp BCSSGGGGGC---------------CCCEEEECGGGEEBCTTCC------CCSCSCCCCCTTSCCBCCEEECTTCCEEEC
T ss_pred HHHHHHHHCCC--------C---CCCCEEEEechhheecCCcccccccccccccccccccccccCCCceeCCCcccceee
Confidence 67899999853 1 2569999999999999988765543210 00 0011 1122337789999
Q ss_pred eEEEEEEcCCCCCCCCCC---hhHHhhceeEEEEEEcCchhhHhhhhhC-CCCCccccccCCC--CCCccccccccCCCc
Q 014784 204 LEMAAVVGPGNELGKPID---VNEAADHIFGVMLMNDWSARDIQAWEYV-PLGPFLGKSFGTT--LSPWIVTLDALEPFA 277 (418)
Q Consensus 204 ~ELavVIGk~~~~gr~v~---~eeA~~~I~Gyti~ND~SaRD~Q~~~~~-~l~~~~~Ksfdt~--lGPwivt~del~~~~ 277 (418)
+||||||||+ |++++ +++|++||+|||++||||+||+|.+++. .++|.++|+||++ +|||+++.+++++..
T Consensus 87 ~EL~vVIgk~---~~~i~~~~~e~A~~~V~Gy~i~nD~s~Rd~q~~~~~~g~~~~~~K~~d~~~Pigp~i~~~~~~~~~~ 163 (257)
T d1nkqa_ 87 IELALIVSKH---LSNVTKMKPEEVYDSISGVALALDLTARNVQDEAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKS 163 (257)
T ss_dssp EEEEEEECSC---BCSCCCCCGGGTGGGEEEEEEEECCEEHHHHHHHHHHTCCSHHHHHSTTCEEBCCCEEGGGGGGGTT
T ss_pred EEEEEEEeec---cccccchhHHHHHHHHhhhhhccccccccchhhhhccCCCcccccccccccCccceEehhhhCcccc
Confidence 9999999999 88886 6999999999999999999999998775 4789999999996 999999988776532
Q ss_pred CCCCCCCCCCCcchhccCCceeeEEEEEEEeeCCCCCcEEEEecCCC--CCCHHHHHHHHHhcceecCCCCEEEcCCCCC
Q 014784 278 CDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISG 355 (418)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~l~i~l~v~~n~~~~~ng~~~q~~~t~--~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~G 355 (418)
.. ...++|+|+| ||+++|+++++ +|+++|||+|+ |+++||+|||||+||||+|
T Consensus 164 ~~----------------~~~l~i~~~v--------NGe~~Q~~~t~~mi~~~~elIa~l-S~~~tL~pGDlI~TGTP~G 218 (257)
T d1nkqa_ 164 NL----------------QDIFRVKCSV--------NGQLRQDGGTNLMLHPLHKILQHI-STMISLEPGDIILTGTPAG 218 (257)
T ss_dssp CC----------------TTTEEEEEEE--------TTEEEEEEEGGGBSSCHHHHHHHH-HTTSCBCTTCEEECCCCSC
T ss_pred cc----------------ccceEEEEEE--------CCEEeeeeeeeccCCCHHHHHHHH-hCCCCcCCCCEEEcCCCCC
Confidence 10 2457888888 99999999998 99999999997 9999999999999999999
Q ss_pred CcCCCCCceEEEEecCccceecCCCCCccCCCCCEEEEEEEEecCCceEeeeeeeeEEeeC
Q 014784 356 PEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 416 (418)
Q Consensus 356 vg~~~~G~~le~~~~G~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~~ 416 (418)
+| +||+||+|+++ |...|. ++++++++|...
T Consensus 219 vg--------------------------~l~~GD~v~~e--I~~~~~--~i~~~~~~~~~~ 249 (257)
T d1nkqa_ 219 VG--------------------------ELKPGDRVHCE--LLQNND--NIVDMNFECENR 249 (257)
T ss_dssp CE--------------------------EECTTCEEEEE--EEETTE--EEEEEEEEEEEC
T ss_pred ce--------------------------eCCCCCEEEEE--EEeCCC--cEEEEEEEEeec
Confidence 75 67899999888 432222 578888887643
No 7
>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.89 E-value=1.7e-23 Score=176.87 Aligned_cols=118 Identities=47% Similarity=0.718 Sum_probs=102.5
Q ss_pred ccccccCCCCCCCCCCCCeEEEeeCCCCCceeEEEECCeEEechhhhhcCCCCCCCccCCCccCcccHHHHHhCCchhHH
Q 014784 4 QSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWK 83 (418)
Q Consensus 4 ~s~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~Gv~~~~~vvdL~~~~~~~~~~~~~~~~~~~~~~~~l~~fl~~g~~~~~ 83 (418)
+|||++|.||||+|+|||||+|++.+++.+|+|+.+||+|+||+++...+++..- .....+|..++||+|+++|.+.|.
T Consensus 1 ~Swv~~a~dsdFpiqNLPfGVfs~~~~~~pR~gvaIGD~vlDL~~l~~~g~~~~~-~~~~~vf~~~tLN~fmalg~~~w~ 79 (118)
T d1hyoa1 1 MSFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKHLFTGPAL-SKHQHVFDETTLNNFMGLGQAAWK 79 (118)
T ss_dssp CCSSCCCTTCSCCTTTCCEEEEECSSCCSCEEEEEETTEEEETTTTGGGCCSTTT-TTCGGGGGSSSSHHHHHHCHHHHH
T ss_pred CccccCCCCCCCCcccCCeEEEEcCCCCCceeeEeECCeeccHHHHHHcCCCccc-chhHHHhhhhhHHHHHhcCHHHHH
Confidence 5999999999999999999999998777899999999999999999876655431 233567889999999999999999
Q ss_pred HHHHHHHHHHhccchhhhhhhhhccccceecCCceEcCC
Q 014784 84 EARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLP 122 (418)
Q Consensus 84 ~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~v~ll~P 122 (418)
++|+.|+.++..+.+.++++..+.....+|+++|+||.|
T Consensus 80 ~vR~~l~~lL~~~~~~l~~~~~l~~~~L~~~~~v~mhLP 118 (118)
T d1hyoa1 80 EARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLP 118 (118)
T ss_dssp HHHHHHHHHHTTSSTHHHHCHHHHHHHEEESTTCEEECS
T ss_pred HHHHHHHHHHhcCCccccccHHHHHHccCcHHHCeecCC
Confidence 999999999998766666655566778999999999998
No 8
>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]}
Probab=99.63 E-value=2.4e-16 Score=148.77 Aligned_cols=154 Identities=16% Similarity=0.066 Sum_probs=112.3
Q ss_pred CCCeeeecCCcccccCCCeeeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCChhHHhhceeEEEEEEc
Q 014784 158 HLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMND 237 (418)
Q Consensus 158 ~~P~~f~k~~ssivg~g~~I~~P~~~~~~~~~~~p~~~~s~~lDyE~ELavVIGk~~~~gr~v~~eeA~~~I~Gyti~ND 237 (418)
+.|++..-..+.+..++..|.++. ...+.+|+||+++|++++. ++..+.+++.++|.++..+++
T Consensus 75 ~~p~~g~l~~~~~~~~~~~i~~~~---------------~~~~~iE~Eiaf~i~~~~~-~~~~~~~~v~~~i~~v~~~iE 138 (261)
T d1sv6a_ 75 DQPDFGTLFADMCYGDNEIIPFSR---------------VLQPRIEAEIALVLNRDLP-ATDITFDELYNAIEWVLPALE 138 (261)
T ss_dssp SSCEEEEEEGGGEEETTEEECTTS---------------SSSCEEEEEEEEEESSCBC-CTTCCHHHHHTTEEEEEEEEE
T ss_pred CCcccccccCceEEeecccccccc---------------ccccceeeEEEEEecCccc-cccccHHHHHHHhhhcccchh
Confidence 356665556677878888777653 3468899999999999865 678999999999999999999
Q ss_pred CchhhHhhhhhCCCCCccccccCC---CCCCccccccccCCCcCCCCCCCCCCCcchhccCCceeeEEEEEEEeeCCCCC
Q 014784 238 WSARDIQAWEYVPLGPFLGKSFGT---TLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKED 314 (418)
Q Consensus 238 ~SaRD~Q~~~~~~l~~~~~Ksfdt---~lGPwivt~del~~~~~~~~~~~~~~~~~~~~~~~~~l~i~l~v~~n~~~~~n 314 (418)
+..+.++.+.... ....+.+... .+|+++...+.++ ..++.+++++ |
T Consensus 139 i~~~r~~~~~~~~-~~~iad~~~~~~~v~g~~~~~~~~~d---------------------~~~~~v~l~~--------n 188 (261)
T d1sv6a_ 139 VVGSRIRDWSIQF-VDTVADNASCGVYVIGGPAQRPAGLD---------------------LKNCAMKMTR--------N 188 (261)
T ss_dssp EECCSBTTCCCCH-HHHHHTGGGEEEEEECSCCBCSTTCC---------------------CSSCEEEEEE--------T
T ss_pred cchhhhhhhcccc-ccccccccCcccccccCcccchhhhc---------------------cccccceEEE--------e
Confidence 9999887654211 1112222221 2777766544432 2457788888 8
Q ss_pred cEEEEecCCC--CCCHHHHHH----HHHhcceecCCCCEEEcCCCCCCc
Q 014784 315 SCVVTRSNFK--YWTLTQQLA----HHTINGCNLRSGDLLGTGTISGPE 357 (418)
Q Consensus 315 g~~~q~~~t~--~~~~~~lIa----~~~S~~~tL~pGDvI~TGTp~Gvg 357 (418)
|+.++++++. .+++...+. ++.+++.+|++||+|+|||+.|+-
T Consensus 189 g~~~~~g~~~~~~g~P~~al~wL~~~l~~~g~~L~~G~iV~TGs~~~~~ 237 (261)
T d1sv6a_ 189 NEEVSSGRGSECLGHPLNAAVWLARKMASLGEPLRTGDIILTGALGPMV 237 (261)
T ss_dssp TEEEEEEEGGGTTTSHHHHHHHHHHHHHHTTCCBCTTCEEEEEESSCCE
T ss_pred ceeEEecccccccCChHHHHHHHHHHHHHcCCCCCCCCEEECCCCCCCE
Confidence 8999988877 777766555 455667899999999999998753
No 9
>d1sroa_ b.40.4.5 (A:) S1 RNA-binding domain of polyribonucleotide phosphorylase, PNPase {Escherichia coli [TaxId: 562]}
Probab=47.81 E-value=3.6 Score=29.41 Aligned_cols=52 Identities=19% Similarity=0.366 Sum_probs=35.0
Q ss_pred ecCCCCEEEcCCCCCCcCCCCCceEEEE--ecCcccee-cCCC----CCccCCCCCEEEEEE
Q 014784 341 NLRSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLS-LDGF----TRKFLEDGDEVTFTG 395 (418)
Q Consensus 341 tL~pGDvI~TGTp~Gvg~~~~G~~le~~--~~G~~~l~-~~~~----~~~~L~~GD~V~~~~ 395 (418)
.|+.|+++ +||...+.. -|+.+++. ++|.-+++ +... +...++.||+|++.+
T Consensus 2 d~kvG~iv-~G~V~~v~~--~G~fV~l~~~~~Glv~~sels~~~~~~~~~~~~~G~~v~v~V 60 (76)
T d1sroa_ 2 EIEVGRVY-TGKVTRIVD--FGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 60 (76)
T ss_dssp CCCTTSEE-EEEEEEEET--TEEEEECSSSCCCBCCTTSSCSSCCSCHHHHCCTTCEEEEEE
T ss_pred CCCCCCEE-EEEEEEEeC--cEEEEEeCCCCEEEEEhHHhCccccCCHHHccCCCCEEEEEE
Confidence 47788875 488887764 47777763 44554443 3322 456799999999885
No 10
>d2c78a2 b.44.1.1 (A:313-405) Elongation factor Tu (EF-Tu) {Thermus thermophilus [TaxId: 274]}
Probab=46.41 E-value=14 Score=27.56 Aligned_cols=49 Identities=24% Similarity=0.205 Sum_probs=34.7
Q ss_pred CCCCcCCCCCceEEEEecCccceecCCCCCccCCCCCEEEEEEEEecCCceEeeeeeeeEE
Q 014784 353 ISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKI 413 (418)
Q Consensus 353 p~Gvg~~~~G~~le~~~~G~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v 413 (418)
+.|...+.+||.+++.+.=. .+.+|++|.... +...|++||.|.++.-+
T Consensus 44 ~~~~~~v~PGd~~~v~l~l~--------~p~~le~g~rF~----iREgg~Tvg~GvIt~il 92 (93)
T d2c78a2 44 PPGVEMVMPGDNVTFTVELI--------KPVALEEGLRFA----IREGGRTVGAGVVTKIL 92 (93)
T ss_dssp CTTCCCBCTTCEEEEEEEEE--------EEEEECTTCEEE----EEETTEEEEEEEEEEEC
T ss_pred cCCceEEcccceEEEEEEEc--------ccEEEcCCCEEE----EEECCEEEEEEEEEEee
Confidence 44556677888888766522 357889998654 44567899999987653
No 11
>d3bzka4 b.40.4.5 (A:637-730) Tex S1-domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=43.65 E-value=5 Score=29.75 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=41.5
Q ss_pred cceecCCCCEEEcCCCCCCcCCCCCceEEEE--ecCcccee-cCCC----CCccCCCCCEEEEEEE-EecCCceEee
Q 014784 338 NGCNLRSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLS-LDGF----TRKFLEDGDEVTFTGF-CKGNGYTVGF 406 (418)
Q Consensus 338 ~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~--~~G~~~l~-~~~~----~~~~L~~GD~V~~~~~-~~~~~~~~~~ 406 (418)
..-.|.+|+ +.+||...+.. .|+.+++. +.|.-++. +.+. +...++.||+|++.+. ++.+.++|.|
T Consensus 12 ~~~~~k~G~-iv~g~V~~v~~--~G~~V~l~~~i~G~i~~~~ls~~~~~~~~~~~~vGq~v~~~V~~id~~~~~i~L 85 (94)
T d3bzka4 12 SLKDLKPGM-VLEGVVTNVTN--FGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGL 85 (94)
T ss_dssp CGGGCCTTC-EEEEEEEEEET--TEEEEECSSSSCEEEEGGGGCSSCCSCHHHHCCTTCEEEEEEEEEETTTTEEEE
T ss_pred HHhcCCCCC-EEEEEEEEEEC--cEEEEEeCCCceEEeehhhhhcccccChhhhhccCcEEEEEEEEEECCCCEEEE
Confidence 345689999 56779888753 57777763 34444432 3322 4567899999998843 1245556544
No 12
>d2ahob2 b.40.4.5 (B:1-84) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=43.00 E-value=2.3 Score=30.88 Aligned_cols=63 Identities=19% Similarity=0.221 Sum_probs=38.6
Q ss_pred ecCCCCEEEcCCCCCCcCCCCCceEEEE----ecCcccee-cCCC----CCccCCCCCEEEEEEE-EecCCceEee
Q 014784 341 NLRSGDLLGTGTISGPEPESLGCLLELT----WNGQKPLS-LDGF----TRKFLEDGDEVTFTGF-CKGNGYTVGF 406 (418)
Q Consensus 341 tL~pGDvI~TGTp~Gvg~~~~G~~le~~----~~G~~~l~-~~~~----~~~~L~~GD~V~~~~~-~~~~~~~~~~ 406 (418)
..++||++ +||..++.. -|..+++. ++|.-+.+ +... +...++.||+|++.+. ++.+.++|.|
T Consensus 8 ~p~~G~iv-~G~V~~v~~--~G~fV~l~~~~gi~Gli~~sels~~~~~~~~~~~~~G~~v~~kV~~vd~~~~~i~L 80 (84)
T d2ahob2 8 LPSEGEIL-IATVKQVFD--YGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKVIRVDRRKGTVDV 80 (84)
T ss_dssp SCCTTCCC-EEEEEEEET--TEEEEEETTTTTEEEEECGGGCC-----CHHHHTCSSCEEECEEEEEETTTTEEEE
T ss_pred CCCCCCEE-EEEEEEEEC--CEEEEEECCcCCEEEEEEccccccccccccceEeecccEEEEEEEEEECCCCEEEE
Confidence 34689986 698877754 47777763 33444433 3322 4567999999998853 1245555544
No 13
>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]}
Probab=41.33 E-value=13 Score=32.02 Aligned_cols=54 Identities=19% Similarity=0.234 Sum_probs=36.4
Q ss_pred CCCCEEEcCCCCCCc-------------------CCCCCceEEEEecCccceecCCCCCccCCCCCEEEEEEEEecCCce
Q 014784 343 RSGDLLGTGTISGPE-------------------PESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYT 403 (418)
Q Consensus 343 ~pGDvI~TGTp~Gvg-------------------~~~~G~~le~~~~G~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~ 403 (418)
.-|.++.+|+-+.+. .++.|+.+-.. ++ ..+.++++||+|+++ ++
T Consensus 187 ~ng~~~~~g~~~~~~g~P~~al~wL~~~l~~~g~~L~~G~iV~TG-----s~----~~~~~i~~Gd~v~~~--f~----- 250 (261)
T d1sv6a_ 187 RNNEEVSSGRGSECLGHPLNAAVWLARKMASLGEPLRTGDIILTG-----AL----GPMVAVNAGDRFEAH--IE----- 250 (261)
T ss_dssp ETTEEEEEEEGGGTTTSHHHHHHHHHHHHHHTTCCBCTTCEEEEE-----ES----SCCEECCTTCEEEEE--ET-----
T ss_pred EeceeEEecccccccCChHHHHHHHHHHHHHcCCCCCCCCEEECC-----CC----CCCEECCCCCEEEEE--Ec-----
Confidence 347778887765441 25667766531 11 046799999999988 67
Q ss_pred EeeeeeeeEE
Q 014784 404 VGFGTCSGKI 413 (418)
Q Consensus 404 ~~~G~~~~~v 413 (418)
|||+++-++
T Consensus 251 -glG~vs~~f 259 (261)
T d1sv6a_ 251 -GIGSVAATF 259 (261)
T ss_dssp -TTEEEEEEE
T ss_pred -CCcEEEEEE
Confidence 899987664
No 14
>d2ba0a1 b.40.4.5 (A:53-135) S1-domain of exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=39.84 E-value=8.9 Score=27.40 Aligned_cols=61 Identities=18% Similarity=0.227 Sum_probs=34.5
Q ss_pred CCCCEEEcCCCCCCcCCCCCceEEEE--ecCcccee-cCC----C-CCccCCCCCEEEEEEEEecCCceEee
Q 014784 343 RSGDLLGTGTISGPEPESLGCLLELT--WNGQKPLS-LDG----F-TRKFLEDGDEVTFTGFCKGNGYTVGF 406 (418)
Q Consensus 343 ~pGDvI~TGTp~Gvg~~~~G~~le~~--~~G~~~l~-~~~----~-~~~~L~~GD~V~~~~~~~~~~~~~~~ 406 (418)
++||+|- |+...+.. .|..+++. +.|.-++. +.+ . +..+++.||+|++.+.--...++|.|
T Consensus 4 k~Gd~V~-G~V~~v~~--~g~~V~i~~~~~g~l~~se~s~~~~~~~~~~~~~vGd~V~~kV~~vd~~~~i~L 72 (83)
T d2ba0a1 4 SVGDVVI-GIIREVAA--NGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTL 72 (83)
T ss_dssp CTTCEEE-EEEEEECS--SEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECTTCCEEE
T ss_pred CCCCEEE-EEEEEEEC--CEEEEecCCCeeEEEecccccccccccChhhhcccccEEEEEEEEECCCCCEEE
Confidence 5688764 88777654 35555542 23333322 221 1 46789999999998642233445544
No 15
>d1kl9a2 b.40.4.5 (A:3-88) Eukaryotic initiation factor 2alpha, eIF2alpha, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.58 E-value=14 Score=26.53 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=34.5
Q ss_pred CCCCEEEcCCCCCCcCCCCCceEEEE----ecCcccee-cCCC----CCccCCCCCEEEEEEEE-ecCCceEee
Q 014784 343 RSGDLLGTGTISGPEPESLGCLLELT----WNGQKPLS-LDGF----TRKFLEDGDEVTFTGFC-KGNGYTVGF 406 (418)
Q Consensus 343 ~pGDvI~TGTp~Gvg~~~~G~~le~~----~~G~~~l~-~~~~----~~~~L~~GD~V~~~~~~-~~~~~~~~~ 406 (418)
+.||++ +||..++.. -|..+++. ++|.-+++ +.+. +...++.||+|++.+.= +.+.++|.|
T Consensus 12 ~~G~iv-~G~V~~i~~--~G~fV~l~~~~~i~G~i~~sels~~~~~~~~~~~~~Gd~v~~kV~~vd~~~~ki~L 82 (86)
T d1kl9a2 12 EVEDVV-MVNVRSIAE--MGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDL 82 (86)
T ss_dssp CTTCEE-EEEEEEECS--SEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEE
T ss_pred CCCCEE-EEEEEEEeC--CeEEEEEecCCCEEEEEEeeeccccccccceEEeecccEEEEEEEEEECCCCEEEE
Confidence 469975 589877753 57777763 44444443 3322 56789999999998531 245666644
No 16
>d1d2ea2 b.44.1.1 (A:349-451) Elongation factor Tu (EF-Tu) {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Probab=30.86 E-value=37 Score=25.54 Aligned_cols=49 Identities=27% Similarity=0.283 Sum_probs=34.0
Q ss_pred CCCcCCCCCceEEEEecCccceecCCCCCccCCCCCEEEEEEEEecCCceEeeeeeeeEEee
Q 014784 354 SGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVP 415 (418)
Q Consensus 354 ~Gvg~~~~G~~le~~~~G~~~l~~~~~~~~~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~ 415 (418)
.|...+.+||.+++.+.=. .|.+|++|.... +...|++||.|.++. |.|
T Consensus 45 ~~~~~v~PGd~~~v~~~l~--------~P~~le~g~rF~----iREggrTVg~GvVte-il~ 93 (103)
T d1d2ea2 45 PGKELAMPGEDLKLTLILR--------QPMILEKGQRFT----LRDGNRTIGTGLVTD-TPA 93 (103)
T ss_dssp SSCCCBCTTCEEEEEEEEE--------EEECCCTTCEEE----EEETTEEEEEEEEEE-CCC
T ss_pred CCccccccCCceEEEEEEC--------CceeecCCCEEE----EEECCEEEEEEEEEE-ccC
Confidence 4455667888888765422 367899998554 445678999999986 444
No 17
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=29.77 E-value=19 Score=25.39 Aligned_cols=15 Identities=27% Similarity=0.107 Sum_probs=12.9
Q ss_pred CccCCCCCEEEEEEE
Q 014784 382 RKFLEDGDEVTFTGF 396 (418)
Q Consensus 382 ~~~L~~GD~V~~~~~ 396 (418)
..|+.+||.|.++.+
T Consensus 43 ri~i~~GD~V~Vel~ 57 (71)
T d1ah9a_ 43 YIRILTGDKVTVELT 57 (71)
T ss_dssp TCCCCTTCEECCEEC
T ss_pred EEEecCCCEEEEEEC
Confidence 579999999999854
No 18
>d1uwva1 b.40.4.12 (A:15-74) rRNA (Uracil-5-)-methyltransferase RumA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=25.66 E-value=27 Score=23.39 Aligned_cols=31 Identities=10% Similarity=-0.037 Sum_probs=21.6
Q ss_pred cCCCCCEEEEEEEEecCCceEeeeeeeeEEeeC
Q 014784 384 FLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 416 (418)
Q Consensus 384 ~L~~GD~V~~~~~~~~~~~~~~~G~~~~~v~~~ 416 (418)
..-|||+|++++ ....++..+|.+...+.|+
T Consensus 29 ~alPGE~V~v~i--~~~~~~~~~a~~~eil~~S 59 (60)
T d1uwva1 29 GLLPQENAEVTV--TEDKKQYARAKVVRRLSDS 59 (60)
T ss_dssp TCCTTCEEEEEE--EEECSSEEEEEEEEECCCC
T ss_pred CCCCCCEEEEEE--EEecCCeEEEEEEEEecCC
Confidence 445999999984 3344455688888777664
No 19
>d2je6i2 b.84.4.2 (I:7-65) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=22.23 E-value=19 Score=24.58 Aligned_cols=12 Identities=33% Similarity=0.601 Sum_probs=9.7
Q ss_pred ecCCCCEEEcCC
Q 014784 341 NLRSGDLLGTGT 352 (418)
Q Consensus 341 tL~pGDvI~TGT 352 (418)
-.-|||+|.+|.
T Consensus 10 iV~PGdvi~~~~ 21 (59)
T d2je6i2 10 IVVPGELLAEGE 21 (59)
T ss_dssp EECTTCEEEEEC
T ss_pred EECCCcEeeeCC
Confidence 457999999885
Done!