RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 014784
(418 letters)
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 298
Score = 329 bits (844), Expect = e-112
Identities = 178/295 (60%), Positives = 219/295 (74%), Gaps = 3/295 (1%)
Query: 125 IGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQF 184
IGDYTDF+SS HA N G +FRG NA+ NW HLP+ YHGRASS+V+SGT I RP GQ
Sbjct: 3 IGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQM 62
Query: 185 APSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQ 244
P + PP +G + LD ELEMA VGPGN G+PI +++A +HIFG++LMNDWSARDIQ
Sbjct: 63 RPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQ 122
Query: 245 AWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLE 304
WEYVPLGPFLGKSFGTT+SPW+V +DAL PF +PKQDP+PLPYL +DI+L
Sbjct: 123 QWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLS 182
Query: 305 VQIKPAGKEDSCVVTRSNFK--YWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLG 362
V +K G + + RSNFK YWT+ QQL HH++NGCNLR GDLL +GTISG +PES G
Sbjct: 183 VSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFG 242
Query: 363 CLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 416
+LEL+W G K + + G TR FL DGDEV TG C+G+GY VGFG C+GK++P+
Sbjct: 243 SMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 297
>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH,
N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 118
Score = 138 bits (349), Expect = 1e-40
Identities = 56/118 (47%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Query: 5 SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSD 64
SFI V DS FPIQNLPYGVF + R GVAIG+ +LDLS I + K
Sbjct: 2 SFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKHLFTGPA-LSKHQH 60
Query: 65 CFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLP 122
F + LN F+ LG+ AWKEAR LQ LLS+++A LRD+ LRQ++ M LP
Sbjct: 61 VFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLP 118
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 257
Score = 71.0 bits (173), Expect = 1e-14
Identities = 44/242 (18%), Positives = 75/242 (30%), Gaps = 41/242 (16%)
Query: 137 HAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPS--------- 187
H K N+ P P + SS+V + + + A S
Sbjct: 21 HIKELN-------NSTPKQ----PFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDG 69
Query: 188 -GNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAW 246
P K+ E+E+A +V + E D I GV L D +AR++Q
Sbjct: 70 TNPGPIFIPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTARNVQDE 129
Query: 247 EYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQ 306
P+ T P + + + S QD + + V
Sbjct: 130 AKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQD-------------IFRVKCSVN 176
Query: 307 IKPAGKEDSCVVTRSNFKYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLE 366
+ + ++ L + L H + +L GD++ TGT +G G +
Sbjct: 177 GQLRQDGGTNLM------LHPLHKILQHIS-TMISLEPGDIILTGTPAGVGELKPGDRVH 229
Query: 367 LT 368
Sbjct: 230 CE 231
>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 217
Score = 44.3 bits (104), Expect = 9e-06
Identities = 37/214 (17%), Positives = 69/214 (32%), Gaps = 46/214 (21%)
Query: 160 PIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKP 219
P+ + +++ G+ I+ P L ELE+ V+ + +
Sbjct: 35 PVLFLKPSTAYAPEGSPILMPAYTR--------------NLHHELELGVVM---GKRCRA 77
Query: 220 IDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPF-LGKSFGTTLSPWIVTLDALEPFAC 278
+ A D++ G L D +ARD+Q P+ L KSF +
Sbjct: 78 VPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVP-------- 129
Query: 279 DSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYWTLT-QQLAHHTI 337
EKI + + L +++ + + + + +
Sbjct: 130 -------------KEKIPDPHKLKLWLKV------NGELRQEGETSSMIFSIPYIISYVS 170
Query: 338 NGCNLRSGDLLGTGTISGPEPESLGCLLELTWNG 371
L GD++ TGT G P +E +G
Sbjct: 171 KIITLEEGDIILTGTPKGVGPVKENDEIEAGIHG 204
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 216
Score = 37.9 bits (87), Expect = 0.001
Identities = 30/193 (15%), Positives = 57/193 (29%), Gaps = 30/193 (15%)
Query: 179 RPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 238
+ + + + +E E+ V+G + + +A D++ G + ND+
Sbjct: 39 KAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQ---ARNVSEADAMDYVAGYTVCNDY 95
Query: 239 SARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKN 298
+ RD Y P + T + IV +A
Sbjct: 96 AIRDYLENYYRPNLRVKSRDGLTPMLSTIVPKEA------------------------IP 131
Query: 299 YDISLEVQIKPAGKEDSCVVTRSNFKYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEP 358
+L ++ G+ T L + L GD++ TGT G
Sbjct: 132 DPHNLTLRTFVNGELRQQGTTADLIFSV---PFLIAYLSEFMTLNPGDMIATGTPKGLSD 188
Query: 359 ESLGCLLELTWNG 371
G + + G
Sbjct: 189 VVPGDEVVVEVEG 201
>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 213
Score = 36.5 bits (83), Expect = 0.003
Identities = 27/235 (11%), Positives = 53/235 (22%), Gaps = 54/235 (22%)
Query: 137 HAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGP 196
F+ P + + ++V+ G I P+G+
Sbjct: 15 QLDAWQEAFQQSPYKAPPKT---AVWFIKPRNTVIGCGEPIPFPQGEK------------ 59
Query: 197 SQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLG 256
+ + + + +AA++I G L ND S + +
Sbjct: 60 ---VLSGATV---ALIVGKTATKVREEDAAEYIAGYALANDVSLPEESFY---------- 103
Query: 257 KSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSC 316
+ + F + L I
Sbjct: 104 --------RPAIKAKCRDGFCPIGETVALSNVDNL--------------TIYTEINGRPA 141
Query: 317 VVTRSNFKYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNG 371
+ Q L+ + L GD + GT G + + G
Sbjct: 142 DHWNTADLQRNAAQLLSALS-EFATLNPGDAILLGTPQARVEIQPGDRVRVLAEG 195
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli
[TaxId: 562]}
Length = 221
Score = 32.1 bits (72), Expect = 0.082
Identities = 31/195 (15%), Positives = 56/195 (28%), Gaps = 31/195 (15%)
Query: 179 RPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDW 238
+P + E+E+A ++G + I G + D
Sbjct: 47 KPETALCDLRQPLAIPSDFGSVHHEVELAVLIGAT---LRQATEEHVRKAIAGYGVALDL 103
Query: 239 SARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPL-PYLAEKISK 297
+ RD+Q P+ A D+ + +
Sbjct: 104 TLRDVQGKMKKAGQPWEK------------------AKAFDNSCPLSGFIPAAEFTGDPQ 145
Query: 298 NYDISLEVQIKPAGKEDSCVVTRSNFKYWTLT-QQLAHHTINGCNLRSGDLLGTGTISGP 356
N +SL V + + L + L++GD++ TGT G
Sbjct: 146 NTTLSLSV--------NGEQRQQGTTADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGV 197
Query: 357 EPESLGCLLELTWNG 371
P G L +T++G
Sbjct: 198 GPLQSGDELTVTFDG 212
>d1b65a_ d.154.1.1 (A:) L-aminopeptidase D-Ala-esterase/amidase DmpA
{Ochrobactrum anthropi [TaxId: 529]}
Length = 367
Score = 28.4 bits (63), Expect = 1.7
Identities = 10/103 (9%), Positives = 24/103 (23%), Gaps = 12/103 (11%)
Query: 153 PANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVV-- 210
+ +P+ A +G + G P + + A V
Sbjct: 58 MQSETPVPV----YAGVHRFNGNGEMTGTHWIEDGGYFLGPVVITNTHGIGMAHHATVRW 113
Query: 211 -----GPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEY 248
+ + + + L ND + + +
Sbjct: 114 MVDRYASTYQTDDFLWIMPVVAETYDGAL-NDINGFPVTEADV 155
>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine
O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
10090]}
Length = 382
Score = 28.5 bits (63), Expect = 1.7
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 69 PNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDY 128
P++ S R W +AR+ L L N L Q SL + +Y
Sbjct: 225 PSIAALTSEERTRWAKAREYLISLDPENLTLLE----KIQTSLFVYSIEDSSPHATPEEY 280
Query: 129 TDFFSSMHH 137
+ F +
Sbjct: 281 SQVFEMLLG 289
>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD
{Escherichia coli [TaxId: 562]}
Length = 261
Score = 28.0 bits (61), Expect = 2.1
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 322 NFKYWTLTQQLAHH-TINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNG 371
LA G LR+GD++ TG + + G E G
Sbjct: 201 LGHPLNAAVWLARKMASLGEPLRTGDIILTGALGPMVAVNAGDRFEAHIEG 251
>d1c0aa2 d.74.4.1 (A:288-420) Prokaryotic AspRS, insert domain
{Escherichia coli [TaxId: 562]}
Length = 133
Score = 27.3 bits (60), Expect = 2.3
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 7/30 (23%)
Query: 122 PMEIGDYTDFFSSMHHAKNCG-TIFRGPAN 150
PME+ D D K+ +F GPAN
Sbjct: 2 PMELTDVADLL------KSVEFAVFAGPAN 25
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium
meliloti [TaxId: 382]}
Length = 79
Score = 25.9 bits (57), Expect = 2.7
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 214 NELGKPIDVNEAADHIFGVMLMNDW 238
G P+ E+ + ++G M +W
Sbjct: 54 EASGVPMSKEESREIVYG-MPYEEW 77
>d1si8a_ e.5.1.1 (A:) Catalase I {Enterococcus faecalis [TaxId:
1351]}
Length = 474
Score = 27.2 bits (60), Expect = 4.2
Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVL--DLSEISKAGLFNGP 58
+Q +E +HF + +P E A+ A G + + +++ +KA +
Sbjct: 28 IQDVHLLEKLAHFNRERVP------ERVVHAKGAGAHGIFKVSQSMAQYTKADFLSEV 79
>d1p80a2 e.5.1.1 (A:27-597) Catalase II {Escherichia coli, HPII
[TaxId: 562]}
Length = 571
Score = 27.2 bits (60), Expect = 4.8
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 8/58 (13%)
Query: 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVL--DLSEISKAGLFNGP 58
L+ FI E +HF + +P E AR A G + LS+I+KA + P
Sbjct: 79 LEDFILREKITHFDHERIP------ERIVHARGSAAHGYFQPYKSLSDITKADFLSDP 130
>d1qwla_ e.5.1.1 (A:) Catalase I {Helicobacter pylori [TaxId:
210]}
Length = 491
Score = 26.8 bits (59), Expect = 4.9
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVL--DLSEISKAGLFNGP 58
LQS +E + F + +P E A+ A G + + D+++ +KA +F+
Sbjct: 33 LQSTWFLEKLAAFDRERIP------ERVVHAKGSGAYGTFTVTKDITKYTKAKIFSKV 84
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 26.8 bits (59), Expect = 5.7
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVL--DLSEISKAGLFNGP 58
LQ +E +HF + +P E A+ A G + + D+++ ++A +F+
Sbjct: 28 LQDVWFLEKLAHFDREVIP------ERRMHAKGSGAFGTFTVTHDITKYTRAKIFSEV 79
>d1a4ea_ e.5.1.1 (A:) Catalase I {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 488
Score = 26.8 bits (59), Expect = 5.9
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVL--DLSEISKAGLFNGP 58
LQ + ++ +HF +N+P + A A G + + D+++I + +F+
Sbjct: 33 LQDYNLIDSLAHFNRENIP------QRNPHAHGSGAFGYFEVTDDITDICGSAMFSKI 84
>d1tyeb1 b.1.15.1 (B:58-106,B:355-440) Hybrid domain of integrin
beta {Human (Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 25.6 bits (56), Expect = 7.0
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 385 LEDGDEVTFTGFCKGNGYTVGFGTCSG 411
L + ++F C N G +C G
Sbjct: 57 LPEELSLSFNATCLNNEVIPGLKSCMG 83
>d1gwea_ e.5.1.1 (A:) Catalase I {Micrococcus lysodeikticus
[TaxId: 1270]}
Length = 498
Score = 26.1 bits (57), Expect = 9.9
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
Query: 3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVL--DLSEISKAGLFN 56
L +E HF N+P E A+ A GE+ + D+S+ +KA +F
Sbjct: 33 LHDTHLLETHQHFNRMNIP------ERRPHAKGSGAFGEFEVTEDVSKYTKALVFQ 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.428
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,619,844
Number of extensions: 77062
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 20
Length of query: 418
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 330
Effective length of database: 1,199,356
Effective search space: 395787480
Effective search space used: 395787480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)