Query 014785
Match_columns 418
No_of_seqs 236 out of 1369
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:29:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0626 Beta-glucosidase, lact 100.0 2E-111 4E-116 849.8 33.0 396 19-417 32-449 (524)
2 COG2723 BglB Beta-glucosidase/ 100.0 4E-109 9E-114 827.4 35.9 383 22-417 2-394 (460)
3 PLN02998 beta-glucosidase 100.0 2E-107 4E-112 842.2 37.1 389 19-417 26-428 (497)
4 PLN02849 beta-glucosidase 100.0 2E-107 5E-112 842.8 37.7 387 16-417 22-423 (503)
5 PLN02814 beta-glucosidase 100.0 2E-107 5E-112 843.1 37.4 386 19-417 23-423 (504)
6 PRK13511 6-phospho-beta-galact 100.0 5E-104 1E-108 816.0 37.4 384 22-417 3-408 (469)
7 PRK09593 arb 6-phospho-beta-gl 100.0 5E-104 1E-108 815.3 37.3 381 21-417 3-408 (478)
8 TIGR01233 lacG 6-phospho-beta- 100.0 1E-103 2E-108 811.5 38.0 379 23-417 3-406 (467)
9 PRK09589 celA 6-phospho-beta-g 100.0 2E-103 3E-108 811.6 37.4 379 23-417 3-407 (476)
10 PRK15014 6-phospho-beta-glucos 100.0 8E-103 2E-107 805.7 39.0 381 20-417 2-408 (477)
11 PF00232 Glyco_hydro_1: Glycos 100.0 2E-104 4E-109 819.4 26.0 383 22-417 3-394 (455)
12 PRK09852 cryptic 6-phospho-bet 100.0 6E-102 1E-106 797.7 37.6 379 23-417 3-405 (474)
13 TIGR03356 BGL beta-galactosida 100.0 1E-100 2E-105 783.2 37.3 371 24-417 1-376 (427)
14 PF02449 Glyco_hydro_42: Beta- 99.4 1.5E-12 3.3E-17 131.8 10.2 109 77-190 10-141 (374)
15 smart00633 Glyco_10 Glycosyl h 99.3 3.3E-10 7.2E-15 108.8 21.6 84 98-190 1-86 (254)
16 PF00150 Cellulase: Cellulase 99.3 2.5E-11 5.4E-16 117.1 10.5 110 78-191 22-135 (281)
17 PF07745 Glyco_hydro_53: Glyco 99.1 3.4E-08 7.4E-13 97.8 21.9 228 80-417 27-282 (332)
18 COG1874 LacA Beta-galactosidas 98.7 4.4E-08 9.6E-13 104.5 8.3 119 78-201 31-176 (673)
19 PF00331 Glyco_hydro_10: Glyco 98.4 9.7E-05 2.1E-09 73.4 22.9 253 24-417 6-271 (320)
20 PF01229 Glyco_hydro_39: Glyco 98.1 1.2E-05 2.6E-10 84.4 9.2 142 78-245 40-202 (486)
21 PRK10150 beta-D-glucuronidase; 98.0 0.00041 8.8E-09 74.9 20.5 94 77-188 313-419 (604)
22 COG2730 BglC Endoglucanase [Ca 98.0 1.8E-05 4E-10 81.2 9.4 118 72-189 63-193 (407)
23 PF01301 Glyco_hydro_35: Glyco 97.8 0.00019 4.1E-09 71.3 10.6 109 78-188 25-151 (319)
24 COG3867 Arabinogalactan endo-1 97.4 0.022 4.7E-07 55.1 18.0 142 81-246 67-222 (403)
25 COG3693 XynA Beta-1,4-xylanase 97.3 0.015 3.3E-07 56.8 16.7 126 96-245 65-192 (345)
26 PLN03059 beta-galactosidase; P 97.2 0.0018 3.9E-08 71.0 10.3 112 73-187 50-187 (840)
27 PF01373 Glyco_hydro_14: Glyco 96.9 0.0024 5.3E-08 64.5 6.9 106 76-188 15-151 (402)
28 PLN02803 beta-amylase 96.8 0.0038 8.1E-08 64.7 7.5 107 77-189 107-252 (548)
29 PLN02161 beta-amylase 96.8 0.0045 9.8E-08 63.8 8.0 111 73-189 113-262 (531)
30 PF13204 DUF4038: Protein of u 96.7 0.0089 1.9E-07 58.6 9.6 103 80-187 33-156 (289)
31 PF02836 Glyco_hydro_2_C: Glyc 96.6 0.0087 1.9E-07 58.7 8.7 93 75-187 34-132 (298)
32 PLN00197 beta-amylase; Provisi 96.6 0.0089 1.9E-07 62.2 8.5 106 78-189 128-272 (573)
33 PF14587 Glyco_hydr_30_2: O-Gl 96.5 0.013 2.7E-07 59.1 8.9 100 88-189 58-185 (384)
34 PLN02801 beta-amylase 96.5 0.016 3.4E-07 59.9 9.5 97 77-177 37-172 (517)
35 PF03198 Glyco_hydro_72: Gluca 96.3 0.19 4.1E-06 49.4 15.8 89 78-186 54-144 (314)
36 PLN02905 beta-amylase 96.3 0.017 3.7E-07 60.9 8.9 101 73-177 282-421 (702)
37 PLN02705 beta-amylase 96.2 0.019 4E-07 60.4 8.6 98 76-177 267-403 (681)
38 PF14488 DUF4434: Domain of un 95.6 0.092 2E-06 47.2 9.5 101 78-188 21-131 (166)
39 KOG0496 Beta-galactosidase [Ca 95.0 0.17 3.7E-06 53.9 10.6 95 78-174 50-155 (649)
40 PF11790 Glyco_hydro_cc: Glyco 94.2 0.19 4.1E-06 47.8 7.9 48 368-416 151-199 (239)
41 PRK09525 lacZ beta-D-galactosi 93.8 0.27 5.8E-06 56.5 9.4 91 75-188 369-464 (1027)
42 PRK10340 ebgA cryptic beta-D-g 92.9 0.43 9.4E-06 54.8 9.3 90 75-187 353-450 (1021)
43 COG3250 LacZ Beta-galactosidas 91.7 0.84 1.8E-05 50.9 9.3 91 73-189 317-409 (808)
44 COG3664 XynB Beta-xylosidase [ 90.8 0.42 9.1E-06 48.4 5.4 102 85-192 13-119 (428)
45 COG3934 Endo-beta-mannanase [C 90.2 0.14 3E-06 52.7 1.5 109 79-189 28-150 (587)
46 smart00642 Aamy Alpha-amylase 86.9 2.2 4.8E-05 38.2 6.8 66 74-139 16-91 (166)
47 PF07488 Glyco_hydro_67M: Glyc 86.8 5.7 0.00012 39.0 9.8 87 76-176 56-150 (328)
48 PF12891 Glyco_hydro_44: Glyco 86.0 2 4.3E-05 40.8 6.2 118 117-252 23-186 (239)
49 KOG2233 Alpha-N-acetylglucosam 80.9 5.4 0.00012 41.4 7.3 136 76-234 77-273 (666)
50 PF02638 DUF187: Glycosyl hydr 79.2 9.2 0.0002 37.9 8.4 99 77-175 19-154 (311)
51 PLN02361 alpha-amylase 77.6 5.6 0.00012 40.9 6.4 65 74-138 26-96 (401)
52 PF12876 Cellulase-like: Sugar 77.0 6 0.00013 31.3 5.2 19 170-188 1-22 (88)
53 TIGR03581 EF_0839 conserved hy 76.7 5.6 0.00012 37.1 5.5 72 77-162 135-229 (236)
54 cd04733 OYE_like_2_FMN Old yel 74.5 96 0.0021 30.9 15.1 145 101-260 63-237 (338)
55 PF05089 NAGLU: Alpha-N-acetyl 74.3 26 0.00056 35.0 9.8 109 76-186 18-183 (333)
56 cd02932 OYE_YqiM_FMN Old yello 73.6 1E+02 0.0022 30.7 16.0 39 102-141 62-100 (336)
57 PF14871 GHL6: Hypothetical gl 73.1 15 0.00032 31.7 7.0 58 81-140 4-66 (132)
58 PLN00196 alpha-amylase; Provis 72.8 7.2 0.00016 40.5 5.9 64 75-138 42-112 (428)
59 PF00128 Alpha-amylase: Alpha 71.7 7.2 0.00016 37.3 5.3 59 79-139 6-73 (316)
60 COG1523 PulA Type II secretory 71.0 8.6 0.00019 42.3 6.1 57 83-139 206-286 (697)
61 cd06592 GH31_glucosidase_KIAA1 67.6 33 0.00071 33.7 9.0 106 79-188 32-167 (303)
62 PRK05799 coproporphyrinogen II 67.2 11 0.00023 38.2 5.7 94 80-191 99-196 (374)
63 TIGR01210 conserved hypothetic 66.9 30 0.00066 34.2 8.7 108 80-202 117-229 (313)
64 PRK09058 coproporphyrinogen II 66.3 19 0.00041 37.6 7.4 105 80-201 163-270 (449)
65 PRK12313 glycogen branching en 64.6 35 0.00077 37.2 9.4 94 75-175 168-302 (633)
66 cd07945 DRE_TIM_CMS Leptospira 64.0 20 0.00043 34.9 6.6 83 78-172 75-158 (280)
67 PF10566 Glyco_hydro_97: Glyco 63.7 24 0.00053 34.3 7.0 70 71-140 26-95 (273)
68 cd06593 GH31_xylosidase_YicI Y 63.4 46 0.001 32.6 9.2 106 79-188 26-161 (308)
69 COG3534 AbfA Alpha-L-arabinofu 63.2 43 0.00093 34.8 8.8 88 79-188 50-175 (501)
70 PLN02784 alpha-amylase 63.0 18 0.0004 40.6 6.7 65 74-138 518-588 (894)
71 PRK05402 glycogen branching en 62.2 54 0.0012 36.5 10.3 93 76-175 264-397 (726)
72 TIGR02403 trehalose_treC alpha 62.2 20 0.00043 38.4 6.7 65 74-139 24-96 (543)
73 PRK09441 cytoplasmic alpha-amy 61.4 19 0.00042 37.8 6.4 66 74-139 19-102 (479)
74 PRK14706 glycogen branching en 61.3 33 0.00071 37.6 8.3 89 83-175 174-299 (639)
75 cd06543 GH18_PF-ChiA-like PF-C 60.8 38 0.00083 33.2 8.0 85 84-176 19-105 (294)
76 cd02803 OYE_like_FMN_family Ol 60.6 82 0.0018 31.0 10.5 138 102-253 62-222 (327)
77 PLN02746 hydroxymethylglutaryl 59.8 28 0.00062 35.0 7.0 84 79-172 123-208 (347)
78 cd07948 DRE_TIM_HCS Saccharomy 59.6 17 0.00038 35.0 5.3 59 80-139 74-133 (262)
79 PRK12399 tagatose 1,6-diphosph 59.0 51 0.0011 32.7 8.3 58 83-144 111-168 (324)
80 TIGR00433 bioB biotin syntheta 58.7 27 0.00058 33.9 6.5 55 80-138 123-178 (296)
81 PRK03705 glycogen debranching 57.5 23 0.0005 38.9 6.3 55 83-139 185-263 (658)
82 PRK04161 tagatose 1,6-diphosph 57.3 57 0.0012 32.5 8.3 59 82-144 112-170 (329)
83 COG3589 Uncharacterized conser 56.9 47 0.001 33.2 7.7 71 81-166 20-90 (360)
84 TIGR01515 branching_enzym alph 56.8 90 0.002 34.0 10.7 99 76-175 155-288 (613)
85 cd03174 DRE_TIM_metallolyase D 56.3 37 0.00079 32.1 6.9 82 80-175 77-159 (265)
86 PRK05692 hydroxymethylglutaryl 54.8 38 0.00083 33.1 6.8 86 78-173 80-167 (287)
87 cd02929 TMADH_HD_FMN Trimethyl 54.5 2.5E+02 0.0054 28.5 14.7 131 109-253 75-231 (370)
88 cd07939 DRE_TIM_NifV Streptomy 54.1 19 0.00042 34.4 4.6 58 80-138 72-130 (259)
89 TIGR02402 trehalose_TreZ malto 53.4 33 0.00071 36.8 6.6 58 75-139 109-181 (542)
90 PRK09505 malS alpha-amylase; R 53.3 30 0.00064 38.2 6.3 61 79-139 232-313 (683)
91 cd06591 GH31_xylosidase_XylS X 52.9 93 0.002 30.8 9.4 80 111-191 59-164 (319)
92 PLN02447 1,4-alpha-glucan-bran 52.7 33 0.00071 38.3 6.5 95 74-175 247-383 (758)
93 PRK10933 trehalose-6-phosphate 52.6 32 0.00069 37.0 6.3 65 73-139 29-102 (551)
94 TIGR03471 HpnJ hopanoid biosyn 52.6 49 0.0011 34.6 7.7 76 80-169 287-364 (472)
95 PRK14041 oxaloacetate decarbox 52.3 49 0.0011 34.8 7.5 56 75-144 88-148 (467)
96 PRK12581 oxaloacetate decarbox 52.0 51 0.0011 34.6 7.5 57 75-145 98-159 (468)
97 COG0821 gcpE 1-hydroxy-2-methy 51.9 1.1E+02 0.0024 30.6 9.3 84 72-170 79-162 (361)
98 PF03659 Glyco_hydro_71: Glyco 51.8 67 0.0014 32.9 8.3 51 77-138 17-67 (386)
99 cd06598 GH31_transferase_CtsZ 51.7 1.1E+02 0.0024 30.3 9.6 110 80-191 27-169 (317)
100 cd06601 GH31_lyase_GLase GLase 51.6 69 0.0015 32.0 8.2 80 112-193 58-140 (332)
101 PRK14705 glycogen branching en 50.8 81 0.0018 37.2 9.5 92 80-175 768-897 (1224)
102 PRK14040 oxaloacetate decarbox 50.7 53 0.0012 35.6 7.7 97 75-189 90-211 (593)
103 TIGR02456 treS_nterm trehalose 49.9 33 0.00071 36.7 6.0 62 76-138 27-96 (539)
104 cd06602 GH31_MGAM_SI_GAA This 48.8 89 0.0019 31.3 8.5 106 80-189 27-168 (339)
105 PRK10785 maltodextrin glucosid 48.6 40 0.00086 36.6 6.4 54 79-139 181-247 (598)
106 cd07938 DRE_TIM_HMGL 3-hydroxy 48.6 57 0.0012 31.6 6.9 84 79-172 75-160 (274)
107 COG1501 Alpha-glucosidases, fa 48.6 68 0.0015 36.0 8.2 101 89-193 294-422 (772)
108 PRK12858 tagatose 1,6-diphosph 48.3 55 0.0012 32.9 6.9 52 83-138 112-163 (340)
109 KOG1065 Maltase glucoamylase a 48.3 86 0.0019 35.0 8.7 104 82-192 316-454 (805)
110 PRK14511 maltooligosyl trehalo 48.1 42 0.00092 38.0 6.5 56 76-138 19-89 (879)
111 TIGR02090 LEU1_arch isopropylm 48.1 28 0.0006 35.2 4.8 60 79-139 73-133 (363)
112 PRK08255 salicylyl-CoA 5-hydro 46.8 4.6E+02 0.01 29.4 16.6 152 100-266 458-646 (765)
113 PF01055 Glyco_hydro_31: Glyco 46.8 1.1E+02 0.0023 31.7 9.0 109 78-190 44-184 (441)
114 PRK07379 coproporphyrinogen II 46.3 81 0.0018 32.3 8.0 104 80-200 115-221 (400)
115 TIGR02104 pulA_typeI pullulana 46.0 36 0.00078 37.0 5.6 57 83-139 170-250 (605)
116 PRK14510 putative bifunctional 45.9 34 0.00075 40.4 5.7 64 75-138 183-267 (1221)
117 TIGR01232 lacD tagatose 1,6-di 45.5 95 0.0021 30.9 7.8 59 83-145 112-170 (325)
118 PRK06294 coproporphyrinogen II 45.4 81 0.0018 31.9 7.7 93 80-190 103-199 (370)
119 cd06603 GH31_GANC_GANAB_alpha 45.2 1.3E+02 0.0027 30.1 9.0 80 112-191 58-167 (339)
120 cd06545 GH18_3CO4_chitinase Th 45.2 65 0.0014 30.6 6.7 74 96-175 26-99 (253)
121 TIGR03234 OH-pyruv-isom hydrox 44.4 75 0.0016 29.9 7.0 67 75-144 82-150 (254)
122 cd02742 GH20_hexosaminidase Be 44.3 66 0.0014 31.6 6.7 64 78-148 17-99 (303)
123 TIGR00539 hemN_rel putative ox 43.4 62 0.0013 32.5 6.5 61 80-145 100-163 (360)
124 PRK05628 coproporphyrinogen II 43.4 1.2E+02 0.0026 30.6 8.6 96 80-192 108-206 (375)
125 PRK13523 NADPH dehydrogenase N 43.2 3.5E+02 0.0076 27.0 12.4 134 111-260 74-228 (337)
126 cd02933 OYE_like_FMN Old yello 43.1 3.5E+02 0.0077 27.0 16.8 135 102-252 62-231 (338)
127 cd06542 GH18_EndoS-like Endo-b 42.4 81 0.0018 29.8 6.9 55 117-175 50-104 (255)
128 PLN02389 biotin synthase 42.3 73 0.0016 32.5 6.8 57 78-138 176-233 (379)
129 cd06604 GH31_glucosidase_II_Ma 42.0 1.9E+02 0.004 28.8 9.6 70 120-191 66-164 (339)
130 TIGR02401 trehalose_TreY malto 41.8 60 0.0013 36.6 6.5 56 76-138 15-85 (825)
131 PF03511 Fanconi_A: Fanconi an 41.6 19 0.00041 26.7 1.7 38 101-141 19-56 (64)
132 PRK11858 aksA trans-homoaconit 41.4 87 0.0019 31.8 7.3 58 80-138 78-136 (378)
133 PRK08599 coproporphyrinogen II 41.3 1.1E+02 0.0024 30.9 8.0 96 79-191 99-197 (377)
134 cd02874 GH18_CFLE_spore_hydrol 40.6 77 0.0017 31.0 6.6 84 83-175 16-103 (313)
135 PRK12568 glycogen branching en 40.5 59 0.0013 36.1 6.2 94 76-175 268-401 (730)
136 PLN02960 alpha-amylase 40.2 56 0.0012 36.9 5.9 95 74-175 413-549 (897)
137 TIGR02100 glgX_debranch glycog 39.9 72 0.0016 35.3 6.8 56 83-139 190-266 (688)
138 PRK12677 xylose isomerase; Pro 39.8 2.7E+02 0.0059 28.4 10.5 71 79-157 33-104 (384)
139 PF11997 DUF3492: Domain of un 39.6 22 0.00047 34.5 2.4 33 368-403 184-216 (268)
140 TIGR02629 L_rham_iso_rhiz L-rh 39.5 1.3E+02 0.0029 31.0 8.0 88 80-182 73-171 (412)
141 smart00729 Elp3 Elongator prot 39.1 1.9E+02 0.0041 25.4 8.5 56 79-138 99-157 (216)
142 PRK00366 ispG 4-hydroxy-3-meth 39.1 1.6E+02 0.0034 29.8 8.3 72 87-170 98-169 (360)
143 PRK12331 oxaloacetate decarbox 39.1 1.2E+02 0.0026 31.8 7.9 92 80-189 99-210 (448)
144 TIGR03217 4OH_2_O_val_ald 4-hy 39.1 2.9E+02 0.0062 27.6 10.4 54 80-147 90-145 (333)
145 TIGR02660 nifV_homocitr homoci 38.5 91 0.002 31.5 6.8 58 80-138 75-133 (365)
146 cd06565 GH20_GcnA-like Glycosy 38.2 1.1E+02 0.0024 30.0 7.2 62 79-148 19-87 (301)
147 cd07943 DRE_TIM_HOA 4-hydroxy- 37.9 2.6E+02 0.0056 26.7 9.6 46 80-139 88-133 (263)
148 cd06600 GH31_MGAM-like This fa 37.4 2.2E+02 0.0047 28.1 9.2 106 81-190 28-164 (317)
149 PRK05474 xylose isomerase; Pro 36.5 5.1E+02 0.011 26.9 13.6 143 83-255 85-238 (437)
150 PRK08208 coproporphyrinogen II 36.2 1.3E+02 0.0028 31.1 7.7 61 80-145 141-204 (430)
151 TIGR01108 oadA oxaloacetate de 35.7 1.2E+02 0.0025 33.0 7.4 92 80-189 94-205 (582)
152 TIGR01589 A_thal_3526 uncharac 35.7 46 0.00099 24.4 2.9 36 121-167 19-55 (57)
153 cd06525 GH25_Lyc-like Lyc mura 35.6 2.7E+02 0.0058 24.9 8.8 50 82-144 13-62 (184)
154 PRK07094 biotin synthase; Prov 35.2 1.3E+02 0.0028 29.6 7.2 57 78-138 127-185 (323)
155 PF07071 DUF1341: Protein of u 35.0 77 0.0017 29.4 5.0 44 77-132 135-178 (218)
156 PRK08446 coproporphyrinogen II 34.7 2E+02 0.0044 28.8 8.6 93 80-189 98-193 (350)
157 PRK13347 coproporphyrinogen II 34.6 73 0.0016 33.2 5.6 60 80-145 152-215 (453)
158 COG0366 AmyA Glycosidases [Car 34.0 68 0.0015 33.2 5.3 59 81-140 33-101 (505)
159 cd06568 GH20_SpHex_like A subg 33.4 1.5E+02 0.0032 29.6 7.3 64 78-148 19-102 (329)
160 cd06570 GH20_chitobiase-like_1 33.3 1.4E+02 0.003 29.6 7.0 63 79-147 20-94 (311)
161 cd02930 DCR_FMN 2,4-dienoyl-Co 33.0 5.1E+02 0.011 25.9 12.9 135 103-251 63-216 (353)
162 PF09713 A_thal_3526: Plant pr 32.9 36 0.00077 24.6 2.0 36 121-167 16-52 (54)
163 PRK09936 hypothetical protein; 32.3 4.2E+02 0.0092 26.1 9.8 62 78-148 39-100 (296)
164 cd07944 DRE_TIM_HOA_like 4-hyd 32.2 97 0.0021 29.9 5.6 67 80-175 85-151 (266)
165 cd06599 GH31_glycosidase_Aec37 32.1 1.6E+02 0.0034 29.1 7.2 110 80-190 32-172 (317)
166 TIGR02635 RhaI_grampos L-rhamn 32.1 2.7E+02 0.0058 28.5 8.9 86 80-181 43-136 (378)
167 TIGR00587 nfo apurinic endonuc 31.9 1.1E+02 0.0025 29.3 6.1 87 79-177 13-103 (274)
168 PRK10605 N-ethylmaleimide redu 31.6 5.5E+02 0.012 25.9 17.4 192 111-317 72-321 (362)
169 TIGR02026 BchE magnesium-proto 30.9 1.7E+02 0.0036 30.9 7.6 61 80-145 287-349 (497)
170 PRK14507 putative bifunctional 30.6 1E+02 0.0022 37.6 6.4 59 76-141 757-832 (1693)
171 TIGR01212 radical SAM protein, 30.4 2E+02 0.0043 28.2 7.6 73 117-202 162-234 (302)
172 PRK13398 3-deoxy-7-phosphohept 30.3 1.8E+02 0.0039 28.1 7.1 73 72-148 36-108 (266)
173 PF02065 Melibiase: Melibiase; 30.3 4.7E+02 0.01 26.9 10.4 137 79-242 60-230 (394)
174 PF01261 AP_endonuc_2: Xylose 30.3 67 0.0015 28.6 4.0 62 76-137 70-131 (213)
175 TIGR00538 hemN oxygen-independ 30.2 87 0.0019 32.6 5.3 60 80-145 151-214 (455)
176 PF04914 DltD_C: DltD C-termin 29.5 1.7E+02 0.0037 25.1 6.0 58 117-178 35-92 (130)
177 TIGR00612 ispG_gcpE 1-hydroxy- 29.3 1.8E+02 0.0039 29.2 6.8 85 71-170 76-160 (346)
178 cd00019 AP2Ec AP endonuclease 28.8 2.8E+02 0.0061 26.3 8.3 54 77-136 10-64 (279)
179 cd07941 DRE_TIM_LeuA3 Desulfob 28.1 1.1E+02 0.0023 29.6 5.2 80 81-172 82-162 (273)
180 PRK09856 fructoselysine 3-epim 28.1 89 0.0019 29.7 4.6 61 75-137 88-148 (275)
181 cd06564 GH20_DspB_LnbB-like Gl 27.5 6E+02 0.013 25.0 10.5 63 79-148 19-109 (326)
182 TIGR02630 xylose_isom_A xylose 27.4 7.2E+02 0.016 25.8 13.7 143 83-255 84-237 (434)
183 PRK01060 endonuclease IV; Prov 27.2 3.2E+02 0.007 25.9 8.4 90 79-177 14-104 (281)
184 cd07937 DRE_TIM_PC_TC_5S Pyruv 27.1 1.7E+02 0.0037 28.3 6.4 68 79-172 93-160 (275)
185 TIGR02631 xylA_Arthro xylose i 26.9 4.5E+02 0.0097 26.8 9.6 92 78-177 33-130 (382)
186 PF01624 MutS_I: MutS domain I 26.9 69 0.0015 26.4 3.1 60 73-138 24-84 (113)
187 PRK06256 biotin synthase; Vali 26.6 1.1E+02 0.0024 30.3 5.1 57 78-138 150-207 (336)
188 PF04055 Radical_SAM: Radical 26.4 1.5E+02 0.0033 24.7 5.4 51 80-134 90-143 (166)
189 PRK05660 HemN family oxidoredu 26.4 2.8E+02 0.006 28.1 8.1 93 80-189 107-202 (378)
190 PTZ00445 p36-lilke protein; Pr 26.2 99 0.0021 29.0 4.2 49 121-172 32-89 (219)
191 TIGR00423 radical SAM domain p 25.8 1.2E+02 0.0027 29.6 5.2 58 79-144 106-170 (309)
192 TIGR01211 ELP3 histone acetylt 25.8 2.4E+02 0.0052 30.2 7.6 107 80-203 206-317 (522)
193 TIGR00542 hxl6Piso_put hexulos 25.4 1.4E+02 0.0031 28.5 5.5 61 76-138 93-153 (279)
194 PLN02925 4-hydroxy-3-methylbut 25.3 2.1E+02 0.0045 31.7 7.0 52 119-171 211-262 (733)
195 PF03932 CutC: CutC family; I 24.5 1.1E+02 0.0024 28.4 4.2 50 76-140 71-120 (201)
196 PLN02411 12-oxophytodienoate r 24.2 6.7E+02 0.014 25.6 10.4 124 111-248 80-240 (391)
197 PRK09249 coproporphyrinogen II 24.2 2.6E+02 0.0057 29.0 7.6 62 79-145 150-214 (453)
198 PRK15492 triosephosphate isome 23.6 1.9E+02 0.0041 27.9 5.9 48 84-139 88-135 (260)
199 PF04646 DUF604: Protein of un 23.6 47 0.001 31.8 1.7 73 126-201 76-148 (255)
200 cd00311 TIM Triosephosphate is 23.5 2.1E+02 0.0045 27.3 6.1 47 84-138 78-124 (242)
201 cd06595 GH31_xylosidase_XylS-l 23.5 2.9E+02 0.0064 26.8 7.3 110 80-190 28-163 (292)
202 cd06562 GH20_HexA_HexB-like Be 23.4 2.1E+02 0.0044 28.8 6.4 63 78-148 19-97 (348)
203 PF10107 Endonuc_Holl: Endonuc 23.4 46 0.001 29.4 1.4 41 278-322 72-114 (156)
204 PRK05904 coproporphyrinogen II 23.3 1.7E+02 0.0037 29.4 5.8 93 80-189 103-198 (353)
205 KOG0470 1,4-alpha-glucan branc 23.1 1.3E+02 0.0028 33.2 5.0 64 76-140 253-333 (757)
206 PRK08207 coproporphyrinogen II 23.1 1.7E+02 0.0037 30.9 5.9 60 80-145 269-332 (488)
207 PLN02923 xylose isomerase 23.0 4.2E+02 0.009 27.6 8.2 180 32-225 18-222 (478)
208 PLN02561 triosephosphate isome 22.9 2E+02 0.0044 27.6 5.9 48 84-139 82-129 (253)
209 cd07947 DRE_TIM_Re_CS Clostrid 22.9 1.4E+02 0.003 29.1 4.8 59 79-138 76-135 (279)
210 COG5309 Exo-beta-1,3-glucanase 22.7 2E+02 0.0044 28.0 5.7 54 69-139 55-108 (305)
211 cd06589 GH31 The enzymes of gl 22.6 3.5E+02 0.0075 25.8 7.6 92 80-190 27-120 (265)
212 cd01335 Radical_SAM Radical SA 22.5 2.3E+02 0.005 24.3 6.0 58 79-138 87-145 (204)
213 PF13200 DUF4015: Putative gly 22.4 2.9E+02 0.0063 27.5 7.0 95 77-173 13-136 (316)
214 cd06563 GH20_chitobiase-like T 22.3 2.4E+02 0.0052 28.4 6.6 63 78-147 19-112 (357)
215 PRK08508 biotin synthase; Prov 22.2 1.8E+02 0.0039 28.1 5.6 56 79-138 101-157 (279)
216 PRK06582 coproporphyrinogen II 21.9 3.7E+02 0.0081 27.4 8.0 95 80-191 111-207 (390)
217 PF14606 Lipase_GDSL_3: GDSL-l 21.9 2.2E+02 0.0048 25.8 5.6 94 80-186 49-146 (178)
218 PF13812 PPR_3: Pentatricopept 21.8 88 0.0019 18.8 2.2 15 120-134 20-34 (34)
219 TIGR00419 tim triosephosphate 21.7 2.2E+02 0.0048 26.4 5.7 43 84-138 75-117 (205)
220 TIGR02102 pullulan_Gpos pullul 21.7 1.9E+02 0.0042 33.9 6.3 66 74-139 477-576 (1111)
221 PF02055 Glyco_hydro_30: O-Gly 21.4 2E+02 0.0043 30.6 5.9 67 122-190 157-236 (496)
222 TIGR02127 pyrF_sub2 orotidine 21.3 2.7E+02 0.0059 26.8 6.4 58 83-146 44-101 (261)
223 cd00927 Cyt_c_Oxidase_VIc Cyto 21.2 45 0.00097 25.5 0.8 19 73-91 46-66 (70)
224 TIGR02159 PA_CoA_Oxy4 phenylac 21.0 1.3E+02 0.0028 26.4 3.8 55 71-135 36-91 (146)
225 TIGR01531 glyc_debranch glycog 20.6 3E+02 0.0065 33.1 7.5 72 73-149 128-219 (1464)
226 COG3280 TreY Maltooligosyl tre 20.3 2E+02 0.0044 32.0 5.7 59 80-139 22-89 (889)
227 PRK08195 4-hyroxy-2-oxovalerat 20.2 2E+02 0.0043 28.8 5.4 68 80-176 91-158 (337)
228 PF06777 DUF1227: Protein of u 20.2 1.8E+02 0.004 25.5 4.5 68 118-186 16-85 (146)
229 cd07940 DRE_TIM_IPMS 2-isoprop 20.1 1.7E+02 0.0038 28.0 4.9 80 80-175 72-156 (268)
230 COG3684 LacD Tagatose-1,6-bisp 20.1 1.8E+02 0.0038 28.2 4.7 56 82-142 116-171 (306)
231 PRK10658 putative alpha-glucos 20.1 6.8E+02 0.015 27.7 9.9 103 83-188 289-420 (665)
No 1
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-111 Score=849.77 Aligned_cols=396 Identities=54% Similarity=0.975 Sum_probs=356.5
Q ss_pred CCCCCCCCCceeehcccccccccccCCCCCcCcccccccc-CCCccccCCCCCccCccccchHHHHHHHHHcCCCeeeec
Q 014785 19 VSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTH-TEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFS 97 (418)
Q Consensus 19 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~-~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~s 97 (418)
+++..||++|+||+||||||+|||+++|||++|+||+|+| .|+++.+..++|+|||+||+|+|||+|||+||+++||||
T Consensus 32 ~~r~~FP~~F~FGtAtSAyQ~EGA~~e~gRg~svWD~f~~~~p~~~~~~~ngdva~D~Yh~ykeDv~Lmk~lgv~afRFS 111 (524)
T KOG0626|consen 32 FSRADFPKGFLFGTATSAYQVEGAANEDGRGPSVWDTFTHKYPGKICDGSNGDVAVDFYHRYKEDVKLMKELGVDAFRFS 111 (524)
T ss_pred ccccCCCCCceeeccchHHHhhhhhccCCCCCchhhhhhccCCcccccCCCCCeechhhhhhHHHHHHHHHcCCCeEEEE
Confidence 4477899999999999999999999999999999999998 455777888899999999999999999999999999999
Q ss_pred cccccccccCC--CCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHHHHHHHHhC
Q 014785 98 ISWSRIFPDGL--GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (418)
Q Consensus 98 i~W~ri~p~~~--g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 175 (418)
|+||||+|.|. + .+|++|++||+++|++|+++||+|+|||+|||+|++|+++||||+|++++++|.+||+.||++||
T Consensus 112 IsWSRIlP~G~~~~-gVN~~Gi~fY~~LI~eL~~nGI~P~VTLfHwDlPq~LeDeYgGwLn~~ivedF~~yA~~CF~~fG 190 (524)
T KOG0626|consen 112 ISWSRILPNGRLTG-GVNEAGIQFYNNLIDELLANGIEPFVTLFHWDLPQALEDEYGGWLNPEIVEDFRDYADLCFQEFG 190 (524)
T ss_pred eehHhhCCCCCcCC-CcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCCHHHHHHhccccCHHHHHHHHHHHHHHHHHhc
Confidence 99999999996 4 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceEEEEccCCccccccCccccccCCCC---------CCCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEe
Q 014785 176 DRVKNWITINEPLQTAVNGYCTGIFAPGR---------HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVV 246 (418)
Q Consensus 176 d~v~~w~t~NEp~~~~~~gy~~g~~~P~~---------~~~~~~~~~~~~~n~l~Aha~a~~~~r~~~~~~~~~~IG~~~ 246 (418)
|+||+|+|||||++++..||..|..|||+ .+++.++.|.|+|||++|||+||++||+.++..|+|+||+++
T Consensus 191 DrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAHA~Av~~yr~kyk~~Q~G~IGi~~ 270 (524)
T KOG0626|consen 191 DRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAHAAAVDLYRKKYKKKQGGKIGIAL 270 (524)
T ss_pred ccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhhcCCeEeEEE
Confidence 99999999999999999999999999998 256789999999999999999999999998888999999999
Q ss_pred cCcccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhHHHhhccCCCCCChhhHHhhcCCCCEEEeeccccceeec
Q 014785 247 DCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAH 326 (418)
Q Consensus 247 ~~~~~~P~~~~p~d~~AA~~~~~~~~~~fldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ikg~~DFiGiNYY~~~~v~~ 326 (418)
+..|+.|.+.+++|++||+|+.+|..+|+++|++.|+||+.|++.+++|||.||++|.++|||+.||+|||||++.+|+.
T Consensus 271 ~~~w~eP~~~s~~D~~Aa~Ra~~F~~gw~l~p~~~GdYP~~Mk~~vg~rLP~FT~ee~~~lKGS~DFvGiNyYts~~~~~ 350 (524)
T KOG0626|consen 271 SARWFEPYDDSKEDKEAAERALDFFLGWFLEPLTFGDYPDEMKERVGSRLPKFTEEESKLLKGSYDFVGINYYTSRYVKH 350 (524)
T ss_pred eeeeeccCCCChHHHHHHHHHHHhhhhhhhcccccCCcHHHHHHHhcccCCCCCHHHHHHhcCchhhceeehhhhhhhhc
Confidence 99999999988999999999999999999999889999999999999999999999999999999999999999999987
Q ss_pred CCCCCCC-CCccchhhhhhhhhcCCC-cccccccCCCCcccChHHHHHHHHHHHHHCCCCCEEEecCCCCCCCch-----
Q 014785 327 ATKSPEE-GSFYEAQEMERLVEWEGG-EVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMCINFSV----- 399 (418)
Q Consensus 327 ~~~~~~~-~~~~~~~~~~~~~~~~~g-~~~~~~~~~~W~~I~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~d~~----- 399 (418)
...+... .+++..|..+.. ...+ .+.++.+...|..++|+|||.+|++++++|++|||||||||+++.+..
T Consensus 351 ~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~~~~~~v~P~Glr~~L~yiK~~Y~np~iyItENG~~d~~~~~~~~~ 428 (524)
T KOG0626|consen 351 LKPPPDPSQPGWSTDSGVDW--TLEGNDLIGPKAGSDWLPVYPWGLRKLLNYIKDKYGNPPIYITENGFDDLDGGTKSLE 428 (524)
T ss_pred cCCCCCCCCcccccccceee--eecccccccccccccceeeccHHHHHHHHHHHhhcCCCcEEEEeCCCCcccccccchh
Confidence 6542211 122333332221 1122 234555667888999999999999999999999999999999987433
Q ss_pred ---hHHHHHHHHHHHHHHHhc
Q 014785 400 ---EVIIIIGLQFQFLNRINE 417 (418)
Q Consensus 400 ---~~~~~~~~~~~~~~~~~~ 417 (418)
...-|++|+..||.++.+
T Consensus 429 ~~l~D~~Ri~Y~~~~L~~~~k 449 (524)
T KOG0626|consen 429 VALKDTKRIEYLQNHLQAVLK 449 (524)
T ss_pred hhhcchHHHHHHHHHHHHHHH
Confidence 224599999999988753
No 2
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-109 Score=827.40 Aligned_cols=383 Identities=38% Similarity=0.660 Sum_probs=341.4
Q ss_pred CCCCCCceeehcccccccccccCCCCCcCcccccccc--CCCccccCCCCCccCccccchHHHHHHHHHcCCCeeeeccc
Q 014785 22 TDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTH--TEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSIS 99 (418)
Q Consensus 22 ~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~--~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~ 99 (418)
.+||+|||||+||||+|+|||+++||||+|+||.|++ .++++..+.+++.||||||||+|||+|||+||+|+|||||+
T Consensus 2 ~~FPkdFlWG~AtAa~Q~EGa~~~dGkg~s~wD~~~~~~~~~~~~~~~~~~~a~d~YhrYkeDi~L~~emG~~~~R~SI~ 81 (460)
T COG2723 2 LKFPKDFLWGGATAAFQVEGAWNEDGKGPSDWDVWVHDEIPGRLVSGDPPEEASDFYHRYKEDIALAKEMGLNAFRTSIE 81 (460)
T ss_pred CCCCCCCeeecccccccccCCcCCCCCCCeeeeeeeccccCCcccCCCCCccccchhhhhHHHHHHHHHcCCCEEEeeee
Confidence 4799999999999999999999999999999999999 46666677889999999999999999999999999999999
Q ss_pred cccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHHHHHHHHhCCcce
Q 014785 100 WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVK 179 (418)
Q Consensus 100 W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~ 179 (418)
||||+|++.+.++|++||+||+++||+|+++||+|+|||+|||+|+||+++||||.|++++++|++||+.||+||||+|+
T Consensus 82 WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 82 WSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQKPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred EEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhhccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 99999998544899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCccccccCccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCHH
Q 014785 180 NWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIE 259 (418)
Q Consensus 180 ~w~t~NEp~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~n~l~Aha~a~~~~r~~~~~~~~~~IG~~~~~~~~~P~~~~p~ 259 (418)
+|+||||||+++..||+.|.+||+.. +.+.++||+||+++|||+||+++|++. ++.+|||+++..+.||.+++|+
T Consensus 162 ~W~TFNE~n~~~~~~y~~~~~~p~~~--~~~~~~qa~hh~~lA~A~avk~~~~~~---~~~kIG~~~~~~p~YP~s~~p~ 236 (460)
T COG2723 162 YWFTFNEPNVVVELGYLYGGHPPGIV--DPKAAYQVAHHMLLAHALAVKAIKKIN---PKGKVGIILNLTPAYPLSDKPE 236 (460)
T ss_pred EEEEecchhhhhcccccccccCCCcc--CHHHHHHHHHHHHHHHHHHHHHHHhhC---CcCceEEEeccCcCCCCCCCHH
Confidence 99999999999999999999999986 378899999999999999999999986 3449999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccccCCCChhHHHhhccC--CCCCChhhHHhhc-CCCCEEEeeccccceeecCCCCCCCCCc
Q 014785 260 DKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQ--LPKFMQKDKELVR-NSLDFVGLNHYTSRFIAHATKSPEEGSF 336 (418)
Q Consensus 260 d~~AA~~~~~~~~~~fldp~~~G~YP~~~~~~l~~~--lp~~t~~d~~~ik-g~~DFiGiNYY~~~~v~~~~~~~~~~~~ 336 (418)
|+.||+.++++.+++|+||+++|+||.++.+.+++. +|.++++|+++|+ +++||||||||++.+|........ .+
T Consensus 237 dv~aA~~~~~~~n~~FlD~~~~G~yp~~~~~~~~~~~~~~~~~~~Dl~~lk~~~~DfiG~NYY~~s~v~~~~~~~~--~~ 314 (460)
T COG2723 237 DVKAAENADRFHNRFFLDAQVKGEYPEYLEKELEENGILPEIEDGDLEILKENTVDFIGLNYYTPSRVKAAEPRYV--SG 314 (460)
T ss_pred HHHHHHHHHHHhhhhhcchhhcCcCCHHHHHHHHhcCCCcccCcchHHHHhcCCCCeEEEeeeeeeeEeeccCCcC--Cc
Confidence 999999999999999999999999999999999876 8999999999998 579999999999554443322110 01
Q ss_pred cchhhhhhhhhcCCCcccccccCCCCcccChHHHHHHHHHHHHHCCCCCEEEecCCCCCCCchhH-----HHHHHHHHHH
Q 014785 337 YEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMCINFSVEV-----IIIIGLQFQF 411 (418)
Q Consensus 337 ~~~~~~~~~~~~~~g~~~~~~~~~~W~~I~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~d~~~~-----~~~~~~~~~~ 411 (418)
+...... ...-+|..+.+++|| +|||+|||.+|+++++||+. ||||||||+|..|++.. ..||+|+++|
T Consensus 315 ~~~~~~~----~~~~~p~~~~sdwGW-eI~P~GL~~~l~~~~~rY~~-p~fItENG~G~~d~~~~~~i~DdyRI~Yl~~H 388 (460)
T COG2723 315 YGPGGFF----TSVPNPGLEVSDWGW-EIYPKGLYDILEKLYERYGI-PLFITENGLGVKDEVDFDGINDDYRIDYLKEH 388 (460)
T ss_pred ccccccc----cccCCCCCcccCCCc-eeChHHHHHHHHHHHHHhCC-CeEEecCCCCcccccccCCcCchHHHHHHHHH
Confidence 1100000 111134446678899 99999999999999999995 59999999998877763 6799999999
Q ss_pred HHHHhc
Q 014785 412 LNRINE 417 (418)
Q Consensus 412 ~~~~~~ 417 (418)
|++|++
T Consensus 389 l~~v~~ 394 (460)
T COG2723 389 LKAVKK 394 (460)
T ss_pred HHHHHH
Confidence 999876
No 3
>PLN02998 beta-glucosidase
Probab=100.00 E-value=1.9e-107 Score=842.16 Aligned_cols=389 Identities=44% Similarity=0.845 Sum_probs=339.6
Q ss_pred CCCCCCCCCceeehcccccccccccCCCCCcCccccccccCCCccccCCCCCccCccccchHHHHHHHHHcCCCeeeecc
Q 014785 19 VSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSI 98 (418)
Q Consensus 19 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si 98 (418)
+++.+||++|+||+|||||||||++++||||+|+||.|++ ++. .+..++++||||||||+|||+|||+||+++|||||
T Consensus 26 ~~~~~FP~~FlwG~AtSA~QvEGa~~~~Gkg~siwD~~~~-~~~-~~~~~~~~a~D~Yhry~EDi~lmk~lG~~~YRfSI 103 (497)
T PLN02998 26 YSRNDFPPGFVFGSGTSAYQVEGAADEDGRTPSIWDVFAH-AGH-SGVAAGNVACDQYHKYKEDVKLMADMGLEAYRFSI 103 (497)
T ss_pred CccccCCCCCEEeeechHHHhCCCcCCCCCccchhhcccc-cCc-CCCCCCcccccHHHhhHHHHHHHHHcCCCeEEeec
Confidence 5567899999999999999999999999999999999988 442 22247899999999999999999999999999999
Q ss_pred ccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHHHHHHHHhCCcc
Q 014785 99 SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRV 178 (418)
Q Consensus 99 ~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v 178 (418)
+||||+|+|.| .+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++||+.||++|||+|
T Consensus 104 sWsRI~P~G~g-~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrV 182 (497)
T PLN02998 104 SWSRLLPSGRG-PINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRV 182 (497)
T ss_pred cHHhcCcCCCC-CcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcC
Confidence 99999999878 89999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred eEEEEccCCccccccCccccccCCCCCC----------CCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEecC
Q 014785 179 KNWITINEPLQTAVNGYCTGIFAPGRHQ----------HSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDC 248 (418)
Q Consensus 179 ~~w~t~NEp~~~~~~gy~~g~~~P~~~~----------~~~~~~~~~~~n~l~Aha~a~~~~r~~~~~~~~~~IG~~~~~ 248 (418)
++|+|||||++++..||..|.+|||... .+.++.++++||+++|||+||+++|+.++..++++||++++.
T Consensus 183 k~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~~~~hn~llAHa~A~~~~~~~~~~~~~g~IGi~~~~ 262 (497)
T PLN02998 183 SHWTTINEVNVFALGGYDQGITPPARCSPPFGLNCTKGNSSIEPYIAVHNMLLAHASATILYKQQYKYKQHGSVGISVYT 262 (497)
T ss_pred CEEEEccCcchhhhcchhhcccCCCccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcEEEEEeC
Confidence 9999999999999999999999999521 123457999999999999999999998644578999999999
Q ss_pred cccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhHHHhhccCCCCCChhhHHhhcCCCCEEEeeccccceeecCC
Q 014785 249 EWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAHAT 328 (418)
Q Consensus 249 ~~~~P~~~~p~d~~AA~~~~~~~~~~fldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ikg~~DFiGiNYY~~~~v~~~~ 328 (418)
.++||.+++|+|++||++.+++.++||+||+++|+||+.+++.+++++|.|+++|+++|++++||||||||++.+|+...
T Consensus 263 ~~~~P~~~~~~D~~aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~t~~d~~~i~~~~DFlGiNyYts~~v~~~~ 342 (497)
T PLN02998 263 YGAVPLTNSVKDKQATARVNDFYIGWILHPLVFGDYPETMKTNVGSRLPAFTEEESEQVKGAFDFVGVINYMALYVKDNS 342 (497)
T ss_pred CeeecCCCCHHHHHHHHHHHHHHhhhhhhHHhCCCcCHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEchhcCcccccCC
Confidence 99999999999999999999999999999999999999999999989999999999999999999999999999997532
Q ss_pred CCCCC-CCccchhhhhhhhhcCCCccccccc-CCCCcccChHHHHHHHHHHHHHCCCCCEEEecCCCCCCC--chhHHHH
Q 014785 329 KSPEE-GSFYEAQEMERLVEWEGGEVIGEKA-ASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMCINF--SVEVIII 404 (418)
Q Consensus 329 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~-~~~W~~I~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~d--~~~~~~~ 404 (418)
.+... ...+.++.+... .+.++.+ .++| +|+|+|||.+|+++++||++|||||||||+++.+ .+....|
T Consensus 343 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~w-~i~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~v~D~~R 415 (497)
T PLN02998 343 SSLKPNLQDFNTDIAVEM------TLVGNTSIENEY-ANTPWSLQQILLYVKETYGNPPVYILENGQMTPHSSSLVDTTR 415 (497)
T ss_pred CcCCCCcccccccccccc------ccCCCcCCCCCC-EEChHHHHHHHHHHHHHcCCCCEEEeCCCCccCCCCcccCHHH
Confidence 21000 001111110000 0111222 3677 9999999999999999999988999999999764 3566789
Q ss_pred HHHHHHHHHHHhc
Q 014785 405 IGLQFQFLNRINE 417 (418)
Q Consensus 405 ~~~~~~~~~~~~~ 417 (418)
++|+++||.++.+
T Consensus 416 i~Yl~~hl~~~~k 428 (497)
T PLN02998 416 VKYLSSYIKAVLH 428 (497)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998864
No 4
>PLN02849 beta-glucosidase
Probab=100.00 E-value=2.2e-107 Score=842.77 Aligned_cols=387 Identities=42% Similarity=0.828 Sum_probs=342.0
Q ss_pred cCCCCCCCCCCCceeehcccccccccccCCCCCcCccccccccCCCccccCCCCCccCccccchHHHHHHHHHcCCCeee
Q 014785 16 PRNVSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYR 95 (418)
Q Consensus 16 ~~~~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R 95 (418)
+..+.+.+||+||+||+|||||||||++++||||+|+||.|++.++ +.++++||||||||+|||+|||+||+++||
T Consensus 22 ~~~~~~~~FP~dFlwG~AtsA~QiEGa~~~~Gkg~SiwD~~~~~~~----~~~~~~a~D~YhrY~eDI~Lm~~lG~~aYR 97 (503)
T PLN02849 22 SSDYSRSDFPEGFVFGAGTSAYQWEGAFDEDGRKPSVWDTFLHSRN----MSNGDIACDGYHKYKEDVKLMVETGLDAFR 97 (503)
T ss_pred cCCCccccCCCCCEEEeechhhhhcCCcCCCCCcCcceeeeeccCC----CCCCCccccHHHhHHHHHHHHHHcCCCeEE
Confidence 3446677899999999999999999999999999999999987542 458899999999999999999999999999
Q ss_pred eccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHHHHHHHHhC
Q 014785 96 FSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (418)
Q Consensus 96 ~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 175 (418)
|||+||||+|+|.| .+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||.|++++++|++||+.||++||
T Consensus 98 fSIsWsRI~P~G~g-~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fg 176 (503)
T PLN02849 98 FSISWSRLIPNGRG-SVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFREFG 176 (503)
T ss_pred EeccHHhcCcCCCC-CCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhc
Confidence 99999999999878 89999999999999999999999999999999999999989999999999999999999999999
Q ss_pred CcceEEEEccCCccccccCccccccCCCCCC---------CCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEe
Q 014785 176 DRVKNWITINEPLQTAVNGYCTGIFAPGRHQ---------HSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVV 246 (418)
Q Consensus 176 d~v~~w~t~NEp~~~~~~gy~~g~~~P~~~~---------~~~~~~~~~~~n~l~Aha~a~~~~r~~~~~~~~~~IG~~~ 246 (418)
|+|++|+|||||++++..||..|.+|||... ++.++.++++||+++|||+||+++|++.+..++++||+++
T Consensus 177 DrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~A~~~~~~~~~~~~~~~IGi~~ 256 (503)
T PLN02849 177 NHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLLAHASVSRLYKQKYKDMQGGSIGFSL 256 (503)
T ss_pred CcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEEE
Confidence 9999999999999999999999999999632 1134689999999999999999999975434789999999
Q ss_pred cCcccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhHHHhhccCCCCCChhhHHhhcCCCCEEEeeccccceeec
Q 014785 247 DCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAH 326 (418)
Q Consensus 247 ~~~~~~P~~~~p~d~~AA~~~~~~~~~~fldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ikg~~DFiGiNYY~~~~v~~ 326 (418)
+..++||.+++|+|+.||++.+++.++||+||+++|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+.
T Consensus 257 ~~~~~~P~~~~~~D~~AA~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~i~~~~DFlGiNyYt~~~v~~ 336 (503)
T PLN02849 257 FALGFTPSTSSKDDDIATQRAKDFYLGWMLEPLIFGDYPDEMKRTIGSRLPVFSKEESEQVKGSSDFIGVIHYLAASVTN 336 (503)
T ss_pred ECceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEeccchhhccc
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999975
Q ss_pred CCCCCC--CCCccchhhhhhhhhcCCCcccccccCCCCcccChHHHHHHHHHHHHHCCCCCEEEecCCCCCCCc----hh
Q 014785 327 ATKSPE--EGSFYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMCINFS----VE 400 (418)
Q Consensus 327 ~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~~I~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~d~----~~ 400 (418)
...... ..+.+.. ..+++....+++|| +|+|+|||.+|+++++||++|||||||||++..|+ +.
T Consensus 337 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~pPi~ITENG~~~~d~~~~~v~ 406 (503)
T PLN02849 337 IKIKPSLSGNPDFYS---------DMGVSLGKFSAFEY-AVAPWAMESVLEYIKQSYGNPPVYILENGTPMKQDLQLQQK 406 (503)
T ss_pred CCCCCCCCCCCcccc---------ccCCCCCccCCCCC-eEChHHHHHHHHHHHHhcCCCCEEEeCCCCCccCCCCCccc
Confidence 321100 0000100 01112223456888 99999999999999999999889999999997654 44
Q ss_pred HHHHHHHHHHHHHHHhc
Q 014785 401 VIIIIGLQFQFLNRINE 417 (418)
Q Consensus 401 ~~~~~~~~~~~~~~~~~ 417 (418)
...|++|+++||.+|.+
T Consensus 407 D~~Ri~Yl~~hL~~l~~ 423 (503)
T PLN02849 407 DTPRIEYLHAYIGAVLK 423 (503)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 56799999999998864
No 5
>PLN02814 beta-glucosidase
Probab=100.00 E-value=2.1e-107 Score=843.06 Aligned_cols=386 Identities=41% Similarity=0.769 Sum_probs=338.7
Q ss_pred CCCCCCCCCceeehcccccccccccCCCCCcCccccccccCCCccccCCCCCccCccccchHHHHHHHHHcCCCeeeecc
Q 014785 19 VSKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSI 98 (418)
Q Consensus 19 ~~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si 98 (418)
+.+.+||++|+||+|||||||||++++||||+|+||.+++. .++.++++||||||||+|||+|||+||+++|||||
T Consensus 23 ~~~~~fP~~FlwG~AtaA~QiEGa~~~~gkg~siwD~~~~~----~~~~~~~~a~D~Yhry~EDI~L~k~lG~~ayRfSI 98 (504)
T PLN02814 23 FTRNDFPEDFLFGAATSAYQWEGAVDEDGRTPSVWDTTSHC----YNGGNGDIASDGYHKYKEDVKLMAEMGLESFRFSI 98 (504)
T ss_pred cccccCCCCCEEeeechhhhhcCCcCCCCCccchhheeeec----cCCCCCCccccHHHhhHHHHHHHHHcCCCEEEEec
Confidence 44567999999999999999999999999999999999873 23468899999999999999999999999999999
Q ss_pred ccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHHHHHHHHhCCcc
Q 014785 99 SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRV 178 (418)
Q Consensus 99 ~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v 178 (418)
+||||+|+|.| .+|++|++||+++|++|+++||+|+|||+|||+|+||+++||||.|+++++.|++||+.||++|||+|
T Consensus 99 sWsRI~P~G~g-~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrV 177 (504)
T PLN02814 99 SWSRLIPNGRG-LINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDV 177 (504)
T ss_pred cHhhcCcCCCC-CCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcC
Confidence 99999999878 89999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred eEEEEccCCccccccCccccccCCCCCC----------CCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEecC
Q 014785 179 KNWITINEPLQTAVNGYCTGIFAPGRHQ----------HSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDC 248 (418)
Q Consensus 179 ~~w~t~NEp~~~~~~gy~~g~~~P~~~~----------~~~~~~~~~~~n~l~Aha~a~~~~r~~~~~~~~~~IG~~~~~ 248 (418)
++|+|||||++++..||..|.. ||... ++.++.++++||+++|||+||+++|+.++..++++||++++.
T Consensus 178 k~WiT~NEP~~~~~~gy~~G~~-pg~~~~~~~~~~~~~~~~~~~~~a~hn~llAHa~Av~~~~~~~~~~~~g~IGi~~~~ 256 (504)
T PLN02814 178 KLWTTINEATIFAIGSYGQGIR-YGHCSPNKFINCSTGNSCTETYIAGHNMLLAHASASNLYKLKYKSKQRGSIGLSIFA 256 (504)
T ss_pred CEEEeccccchhhhcccccCcC-CCCCCcccccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEeC
Confidence 9999999999999999998885 76431 112468999999999999999999997554578999999999
Q ss_pred cccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhHHHhhccCCCCCChhhHHhhcCCCCEEEeeccccceeecCC
Q 014785 249 EWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAHAT 328 (418)
Q Consensus 249 ~~~~P~~~~p~d~~AA~~~~~~~~~~fldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ikg~~DFiGiNYY~~~~v~~~~ 328 (418)
.++||++++|+|+.||++++++.++||+||+++|+||+.|++.+++++|.|+++|+++|++++||||||||++.+|+...
T Consensus 257 ~~~~P~~~~~~D~~Aa~~~~~~~~~~f~dp~~~G~YP~~~~~~l~~~lp~~~~~d~~~ikg~~DFiGiNyYt~~~v~~~~ 336 (504)
T PLN02814 257 FGLSPYTNSKDDEIATQRAKAFLYGWMLKPLVFGDYPDEMKRTLGSRLPVFSEEESEQVKGSSDFVGIIHYTTFYVTNRP 336 (504)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhhhhhHHHhCCCccHHHHHHHhcCCCCCCHHHHHHhcCCCCEEEEcccccceeccCC
Confidence 99999999999999999999998999999999999999999999999999999999999999999999999999997532
Q ss_pred CCCCC---CCccchhhhhhhhhcCCCcccccccCCCCcccChHHHHHHHHHHHHHCCCCCEEEecCCCCCCC--chhHHH
Q 014785 329 KSPEE---GSFYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMCINF--SVEVII 403 (418)
Q Consensus 329 ~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~~I~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~d--~~~~~~ 403 (418)
..... ...+..+.+. ...+.++.+++|| +|+|+|||.+|+++++||++|||||||||++..+ .+....
T Consensus 337 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~gW-ei~P~Gl~~~L~~~~~rY~~ppI~ITENG~~~~~~g~i~D~~ 409 (504)
T PLN02814 337 APSIFPSMNEGFFTDMGA------YIISAGNSSFFEF-DATPWGLEGILEHIKQSYNNPPIYILENGMPMKHDSTLQDTP 409 (504)
T ss_pred CCCcccccCCCccccccc------ccCCCCCcCCCCC-eECcHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCcccCHH
Confidence 11000 0011000000 0012235677889 9999999999999999999988999999999654 366788
Q ss_pred HHHHHHHHHHHHhc
Q 014785 404 IIGLQFQFLNRINE 417 (418)
Q Consensus 404 ~~~~~~~~~~~~~~ 417 (418)
|++|+++||.++.+
T Consensus 410 Ri~Yl~~hl~~l~~ 423 (504)
T PLN02814 410 RVEFIQAYIGAVLN 423 (504)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 6
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=100.00 E-value=4.8e-104 Score=816.00 Aligned_cols=384 Identities=32% Similarity=0.519 Sum_probs=329.9
Q ss_pred CCCCCCceeehcccccccccccCCCCCcCccccccccCCCccccCCCCCccCccccchHHHHHHHHHcCCCeeeeccccc
Q 014785 22 TDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWS 101 (418)
Q Consensus 22 ~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ 101 (418)
.+||+||+||+|||||||||++++||||+|+||+|++.++++ ++++||||||||+|||+|||+||+++|||||+||
T Consensus 3 ~~fP~~FlwG~Atsa~QiEG~~~~~Gkg~siwD~~~~~~~~~----~~~~a~d~Y~ry~eDi~L~~~lG~~~yRfSIsWs 78 (469)
T PRK13511 3 KTLPKDFIFGGATAAYQAEGATKTDGKGPVAWDKYLEENYWF----TPDPASDFYHRYPEDLKLAEEFGVNGIRISIAWS 78 (469)
T ss_pred CCCCCCCEEEeechHhhhcCCcCCCCCccchhhcccccCCCC----CCCcccchhhhhHHHHHHHHHhCCCEEEeeccHh
Confidence 359999999999999999999999999999999998866543 7899999999999999999999999999999999
Q ss_pred cccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHHHHHHHHhCCcceEE
Q 014785 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNW 181 (418)
Q Consensus 102 ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w 181 (418)
||+|+|+| .+|++||+||+++|++|+++||+|+|||+|||+|+||+++ |||+|+++++.|++||+.||++||| |++|
T Consensus 79 RI~P~G~g-~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~~~~fgd-Vk~W 155 (469)
T PRK13511 79 RIFPDGYG-EVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN-GDWLNRENIDHFVRYAEFCFEEFPE-VKYW 155 (469)
T ss_pred hcCcCCCC-CcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEE
Confidence 99999877 8999999999999999999999999999999999999976 9999999999999999999999999 9999
Q ss_pred EEccCCccccccCccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEecCcccccCC-CCHHH
Q 014785 182 ITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANS-DKIED 260 (418)
Q Consensus 182 ~t~NEp~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~n~l~Aha~a~~~~r~~~~~~~~~~IG~~~~~~~~~P~~-~~p~d 260 (418)
+|||||++++..||+.|.+|||+.. +.++.++++||+++|||+||++||++. ++++||++++..+++|.+ ++|+|
T Consensus 156 ~T~NEP~~~~~~gy~~G~~~Pg~~~-~~~~~~~~~hn~llAHa~A~~~~~~~~---~~g~IGi~~~~~~~~P~~~~~~~d 231 (469)
T PRK13511 156 TTFNEIGPIGDGQYLVGKFPPGIKY-DLAKVFQSHHNMMVAHARAVKLFKDKG---YKGEIGVVHALPTKYPIDPDNPED 231 (469)
T ss_pred EEccchhhhhhcchhhcccCCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceEeeCCCCCHHH
Confidence 9999999999999999999999742 234789999999999999999999975 789999999999999999 99999
Q ss_pred HHHHHHHHHHhccccccccccCCCChhHHHhhc----c--CCCCCChhhHHhhc---CCCCEEEeeccccceeecCCCCC
Q 014785 261 KSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLG----D--QLPKFMQKDKELVR---NSLDFVGLNHYTSRFIAHATKSP 331 (418)
Q Consensus 261 ~~AA~~~~~~~~~~fldp~~~G~YP~~~~~~l~----~--~lp~~t~~d~~~ik---g~~DFiGiNYY~~~~v~~~~~~~ 331 (418)
+.||++.++++++||+||+++|+||+.|++.++ + ..|.|+++|+++|+ +++||||||||+|.+|+......
T Consensus 232 ~~aa~~~~~~~~~~f~dp~~~G~Yp~~~~~~~~~~~~~~~~~l~~t~~d~~~ik~~~~~~DFiGiNyYt~~~v~~~~~~~ 311 (469)
T PRK13511 232 VRAAELEDIIHNKFILDATYLGYYSEETMEGVNHILEANGGSLDIRDEDFEILKAAKDLNDFLGINYYMSDWMRAYDGET 311 (469)
T ss_pred HHHHHHHHHHhhhcccchhhCCCCCHHHHHHHHHhhhhcCCCCCCCHHHHHHHhcCCCCCCEEEechhhcceeecCCCcc
Confidence 999999999999999999999999999998774 2 13589999999996 46899999999999997532110
Q ss_pred CCCCccchhhhhh---h--hhcCCCcccccccCCCCcccChHHHHHHHHHHHHHCCC-CCEEEecCCCCCCCc------h
Q 014785 332 EEGSFYEAQEMER---L--VEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNN-PPIYVTENGMCINFS------V 399 (418)
Q Consensus 332 ~~~~~~~~~~~~~---~--~~~~~g~~~~~~~~~~W~~I~P~GL~~~L~~i~~rY~~-ppI~ITENG~~~~d~------~ 399 (418)
.......++.... . ......++..+.++++| +|+|+||+.+|++++++|++ |||||||||++..|+ +
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~~~pi~ITENG~~~~d~~~~~~~~ 390 (469)
T PRK13511 312 EIIHNGTGEKGSSKYQLKGVGERVKPPDVPTTDWDW-IIYPQGLYDQLMRIKKDYPNYKKIYITENGLGYKDEFVDGKTV 390 (469)
T ss_pred ccccCCCCccccccccccCccccccCCCCCcCCCCC-eECcHHHHHHHHHHHHHcCCCCCEEEecCCcCCCCCcCCCCcc
Confidence 0000000000000 0 00000111224567888 99999999999999999997 679999999996653 4
Q ss_pred hHHHHHHHHHHHHHHHhc
Q 014785 400 EVIIIIGLQFQFLNRINE 417 (418)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~ 417 (418)
....|++|+++||.++.+
T Consensus 391 ~D~~Ri~yl~~hl~~~~~ 408 (469)
T PRK13511 391 DDDKRIDYVKQHLEVISD 408 (469)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 457799999999998864
No 7
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=5.5e-104 Score=815.26 Aligned_cols=381 Identities=30% Similarity=0.496 Sum_probs=328.4
Q ss_pred CCCCCCCceeehcccccccccccCCCCCcCccccccccCCCccc--c----------C--CCCCccCccccchHHHHHHH
Q 014785 21 KTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKII--D----------K--SNGDVAVDHYHRYKEDIDLI 86 (418)
Q Consensus 21 ~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~--~----------~--~~~~~a~d~y~~~~eDi~l~ 86 (418)
..+||++|+||+|||||||||++++||||+|+||+|++.++++. . + .++++||||||||+|||+||
T Consensus 3 ~~~fP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~d~Yhry~eDi~Lm 82 (478)
T PRK09593 3 KMPFPKGFLWGGATAANQCEGAYNVDGRGLANVDVVPIGEDRFPIITGEKKMFDFEEGYFYPAKEAIDMYHHYKEDIALF 82 (478)
T ss_pred cccCCCCCEEeeechHHHhCCCcCCCCCccchhhccccCcCcccccccccccccccccccCCCCcccchHHhhHHHHHHH
Confidence 45699999999999999999999999999999999988555431 1 1 15789999999999999999
Q ss_pred HHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHH
Q 014785 87 AKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIY 166 (418)
Q Consensus 87 ~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~y 166 (418)
|+||+++|||||+||||+|+|.+..+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|++++++|++|
T Consensus 83 ~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~Y 162 (478)
T PRK09593 83 AEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERL 162 (478)
T ss_pred HHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHH
Confidence 99999999999999999999743269999999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHhCCcceEEEEccCCccccccCcc-ccc-cCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEE
Q 014785 167 ADTCFASFGDRVKNWITINEPLQTAVNGYC-TGI-FAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGL 244 (418)
Q Consensus 167 a~~~~~~~~d~v~~w~t~NEp~~~~~~gy~-~g~-~~P~~~~~~~~~~~~~~~n~l~Aha~a~~~~r~~~~~~~~~~IG~ 244 (418)
|+.||++|||+|++|+|||||++++..||. .|. +|||.. +.++.++++||+++|||+||++||+.. ++++||+
T Consensus 163 A~~~~~~fgdrVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~--~~~~~~~a~h~~llAHa~A~~~~~~~~---~~g~VGi 237 (478)
T PRK09593 163 CRTLFTRYKGLVKYWLTFNEINMILHAPFMGAGLYFEEGEN--KEQVKYQAAHHELVASAIATKIAHEVD---PENKVGC 237 (478)
T ss_pred HHHHHHHhcCcCCEEEeecchhhhhcccccccCcccCCCCc--hhhhHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEE
Confidence 999999999999999999999999988886 454 477742 345689999999999999999999965 7899999
Q ss_pred EecCcccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhHHHhhccC--CCCCChhhHHhhc-CCCCEEEeecccc
Q 014785 245 VVDCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQ--LPKFMQKDKELVR-NSLDFVGLNHYTS 321 (418)
Q Consensus 245 ~~~~~~~~P~~~~p~d~~AA~~~~~~~~~~fldp~~~G~YP~~~~~~l~~~--lp~~t~~d~~~ik-g~~DFiGiNYY~~ 321 (418)
+++..+++|.+++|+|++||++.+ +.+.||+||+++|+||+.|++.++++ +|.|+++|+++|+ +++||||||||+|
T Consensus 238 ~~~~~~~~P~~~~~~D~~aa~~~~-~~~~~fld~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~ik~g~~DFlGiNyYt~ 316 (478)
T PRK09593 238 MLAAGQYYPNTCHPEDVWAAMKED-RENYFFIDVQARGEYPNYAKKRFEREGITIEMTEEDLELLKENTVDFISFSYYSS 316 (478)
T ss_pred EEeCCeeEeCCCCHHHHHHHHHHH-HHhhhhhhhhhCCCccHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccC
Confidence 999999999999999999999887 45789999999999999999999863 6889999999996 8999999999999
Q ss_pred ceeecCCCCCCCCCccchhhhhhhhhcCCCcccccccCCCCcccChHHHHHHHHHHHHHCCCCCEEEecCCCCCCCc---
Q 014785 322 RFIAHATKSPEEGSFYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMCINFS--- 398 (418)
Q Consensus 322 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~~I~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~d~--- 398 (418)
.+|+....... ....+. .. ... +|..+.+++|| +|+|+||+.+|+++++||++| |||||||++..++
T Consensus 317 ~~v~~~~~~~~---~~~~~~-~~---~~~-~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~P-i~ItENG~~~~d~~~~ 386 (478)
T PRK09593 317 RVASGDPKVNE---KTAGNI-FA---SLK-NPYLKASEWGW-QIDPLGLRITLNTIWDRYQKP-MFIVENGLGAVDKPDE 386 (478)
T ss_pred cccccCCCCCC---CCCCCc-cc---ccc-CCCcccCCCCC-EECHHHHHHHHHHHHHHcCCC-EEEEcCCCCCCCCCCC
Confidence 99975321100 000000 00 000 23334667889 999999999999999999986 9999999997654
Q ss_pred ---hhHHHHHHHHHHHHHHHhc
Q 014785 399 ---VEVIIIIGLQFQFLNRINE 417 (418)
Q Consensus 399 ---~~~~~~~~~~~~~~~~~~~ 417 (418)
+....|++|+++||.++..
T Consensus 387 ~g~i~D~~Ri~yl~~hl~~~~~ 408 (478)
T PRK09593 387 NGYVEDDYRIDYLAAHIKAMRD 408 (478)
T ss_pred CCccCCHHHHHHHHHHHHHHHH
Confidence 3456799999999998753
No 8
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=100.00 E-value=1.1e-103 Score=811.52 Aligned_cols=379 Identities=29% Similarity=0.488 Sum_probs=328.7
Q ss_pred CCCCCceeehcccccccccccCCCCCcCccccccccCCCccccCCCCCccCccccchHHHHHHHHHcCCCeeeecccccc
Q 014785 23 DFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSR 102 (418)
Q Consensus 23 ~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~r 102 (418)
+||+||+||+|||||||||+++++|||+|+||.+++.+++ .++++||||||||+|||+|||+||+++|||||+|||
T Consensus 3 ~fP~~FlwG~AtsA~QvEG~~~~~Gkg~siwD~~~~~~~~----~~~~~a~d~yhry~eDi~L~~~lG~~~yRfSIsWsR 78 (467)
T TIGR01233 3 TLPKDFIFGGATAAYQAEGATHTDGKGPVAWDKYLEDNYW----YTAEPASDFYHKYPVDLELAEEYGVNGIRISIAWSR 78 (467)
T ss_pred CCCCCCEEeeechhhhcCCCcCCCCCcCchhhccccCCCC----CCCCccCchhhhHHHHHHHHHHcCCCEEEEecchhh
Confidence 5999999999999999999999999999999998875443 367899999999999999999999999999999999
Q ss_pred ccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHHHHHHHHhCCcceEEE
Q 014785 103 IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWI 182 (418)
Q Consensus 103 i~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~ 182 (418)
|+|+|.| .+|++|++||+++|++|+++||+|+|||+|||+|+||+++ |||+|+++++.|++||+.||++||+ |++|+
T Consensus 79 I~P~g~~-~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~-GGW~n~~~v~~F~~YA~~~f~~fgd-Vk~Wi 155 (467)
T TIGR01233 79 IFPTGYG-EVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN-GDFLNRENIEHFIDYAAFCFEEFPE-VNYWT 155 (467)
T ss_pred ccCCCCC-CcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc-CCCCCHHHHHHHHHHHHHHHHHhCC-CCEEE
Confidence 9999878 8999999999999999999999999999999999999976 9999999999999999999999998 99999
Q ss_pred EccCCccccccCccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEecCcccccCC-CCHHHH
Q 014785 183 TINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANS-DKIEDK 261 (418)
Q Consensus 183 t~NEp~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~n~l~Aha~a~~~~r~~~~~~~~~~IG~~~~~~~~~P~~-~~p~d~ 261 (418)
|||||++++..||+.|.+|||... ..++.++++||+++|||+||+++|++. ++++||++++..++||++ ++|+|+
T Consensus 156 T~NEP~~~~~~gy~~G~~~Pg~~~-~~~~~~~a~hn~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~~D~ 231 (467)
T TIGR01233 156 TFNEIGPIGDGQYLVGKFPPGIKY-DLAKVFQSHHNMMVSHARAVKLYKDKG---YKGEIGVVHALPTKYPYDPENPADV 231 (467)
T ss_pred EecchhhhhhccchhcccCCCccc-hhHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEecCceeEECCCCCHHHH
Confidence 999999999999999999999631 235789999999999999999999975 789999999999999998 899999
Q ss_pred HHHHHHHHHhccccccccccCCCChhHHHhhcc----C--CCCCChhhHHhh---cCCCCEEEeeccccceeecCCCCCC
Q 014785 262 SAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGD----Q--LPKFMQKDKELV---RNSLDFVGLNHYTSRFIAHATKSPE 332 (418)
Q Consensus 262 ~AA~~~~~~~~~~fldp~~~G~YP~~~~~~l~~----~--lp~~t~~d~~~i---kg~~DFiGiNYY~~~~v~~~~~~~~ 332 (418)
+||++.+++.++||+||+++|+||+.|++.++. + +|.++++|+++| ++++||||||||+|.+|+.......
T Consensus 232 ~aA~~~~~~~~~~f~d~~~~G~Yp~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~DFlGinyYt~~~v~~~~~~~~ 311 (467)
T TIGR01233 232 RAAELEDIIHNKFILDATYLGHYSDKTMEGVNHILAENGGELDLRDEDFQALDAAKDLNDFLGINYYMSDWMQAFDGETE 311 (467)
T ss_pred HHHHHHHHHhhhcccchhhCCCCCHHHHHHHHhhhhccCCCCCCCHHHHHHHhccCCCCCEEEEccccceeeccCCCccc
Confidence 999999999899999999999999999988763 2 378999999999 4899999999999999975311100
Q ss_pred ---C-C----CccchhhhhhhhhcCCCcc-cccccCCCCcccChHHHHHHHHHHHHHCCC-CCEEEecCCCCCCCc----
Q 014785 333 ---E-G----SFYEAQEMERLVEWEGGEV-IGEKAASEWLYVVPWGLRKVLNYIAKTYNN-PPIYVTENGMCINFS---- 398 (418)
Q Consensus 333 ---~-~----~~~~~~~~~~~~~~~~g~~-~~~~~~~~W~~I~P~GL~~~L~~i~~rY~~-ppI~ITENG~~~~d~---- 398 (418)
. . .......... ....+ ..+.+++|| +|+|+|||.+|+++++||++ |||||||||++..++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~t~~gw-~i~P~Gl~~~L~~~~~~Y~~~ppi~ItENG~~~~d~~~~g 386 (467)
T TIGR01233 312 IIHNGKGEKGSSKYQIKGVG----RRVAPDYVPRTDWDW-IIYPEGLYDQIMRVKNDYPNYKKIYITENGLGYKDEFVDN 386 (467)
T ss_pred cccCCccccCcccccCCCcc----cccCCCCCCcCCCCC-eeChHHHHHHHHHHHHHcCCCCCEEEeCCCCCCCCCCCCC
Confidence 0 0 0000000000 00011 114567888 99999999999999999997 679999999997654
Q ss_pred -hhHHHHHHHHHHHHHHHhc
Q 014785 399 -VEVIIIIGLQFQFLNRINE 417 (418)
Q Consensus 399 -~~~~~~~~~~~~~~~~~~~ 417 (418)
+....|++|+++||.+|.+
T Consensus 387 ~i~D~~Ri~Yl~~hl~~~~~ 406 (467)
T TIGR01233 387 TVYDDGRIDYVKQHLEVLSD 406 (467)
T ss_pred ccCCHHHHHHHHHHHHHHHH
Confidence 3456799999999998864
No 9
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=100.00 E-value=1.5e-103 Score=811.56 Aligned_cols=379 Identities=30% Similarity=0.529 Sum_probs=324.3
Q ss_pred CCCCCceeehcccccccccccCCCCCcCccccccc---c-CCCccc----cCC--CCCccCccccchHHHHHHHHHcCCC
Q 014785 23 DFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFT---H-TEGKII----DKS--NGDVAVDHYHRYKEDIDLIAKLGFD 92 (418)
Q Consensus 23 ~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~---~-~~~~~~----~~~--~~~~a~d~y~~~~eDi~l~~~lG~~ 92 (418)
+||++|+||+|||||||||++++||||+|+||.|+ + .++++. ++. ++++||||||||+|||+|||+||++
T Consensus 3 ~fP~~FlwG~AtsA~QiEGa~~~~gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~a~D~Yhry~eDi~Lm~~lG~~ 82 (476)
T PRK09589 3 GFKKGFLWGGAVAAHQLEGGWNEGGKGISVADVMTAGAHGVPREITEGVIEGKNYPNHEAIDFYHRYKEDIALFAEMGFK 82 (476)
T ss_pred CCCCCCEEeeechHhhhcCCcCCCCCCCchhcccccccccCccccccCccCCCcCCCcccccHHHhhHHHHHHHHHcCCC
Confidence 59999999999999999999999999999999998 3 244442 222 5789999999999999999999999
Q ss_pred eeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHHHHHHH
Q 014785 93 AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFA 172 (418)
Q Consensus 93 ~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~ 172 (418)
+|||||+||||+|+|.+..+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||+.||+
T Consensus 83 ~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 83 CFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred EEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 99999999999999753268999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCcceEEEEccCCcccccc-----Ccc-ccc-cCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 014785 173 SFGDRVKNWITINEPLQTAVN-----GYC-TGI-FAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLV 245 (418)
Q Consensus 173 ~~~d~v~~w~t~NEp~~~~~~-----gy~-~g~-~~P~~~~~~~~~~~~~~~n~l~Aha~a~~~~r~~~~~~~~~~IG~~ 245 (418)
+|||+|++|+|||||++++.. ||. .|. +|||.. .....++++||+++|||+||+++|++. ++++||++
T Consensus 163 ~fgdrVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~--~~~~~~~~~h~~llAha~A~~~~~~~~---~~~~iG~~ 237 (476)
T PRK09589 163 RYKDKVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGED--REQIMYQAAHYELVASALAVKTGHEIN---PDFQIGCM 237 (476)
T ss_pred HhcCCCCEEEEecchhhhhccccccCCccccccccCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhC---CCCcEEEE
Confidence 999999999999999998766 555 454 477642 235579999999999999999999975 68899999
Q ss_pred ecCcccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhHHHhhccC--CCCCChhhHHhh-cCCCCEEEeeccccc
Q 014785 246 VDCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQ--LPKFMQKDKELV-RNSLDFVGLNHYTSR 322 (418)
Q Consensus 246 ~~~~~~~P~~~~p~d~~AA~~~~~~~~~~fldp~~~G~YP~~~~~~l~~~--lp~~t~~d~~~i-kg~~DFiGiNYY~~~ 322 (418)
+++.++||.+++|+|++||++++.+ +.||+||+++|+||+.|++.++++ .|.|+++|+++| ++++||||||||+|.
T Consensus 238 ~~~~~~~P~~~~~~d~~aa~~~~~~-~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~t~~d~~~l~~g~~DFlGiNyYts~ 316 (476)
T PRK09589 238 IAMCPIYPLTCAPNDMMMATKAMHR-RYWFTDVHVRGYYPQHILNYFARKGFNLDITPEDNAILAEGCVDYIGFSYYMSF 316 (476)
T ss_pred EeCCeeeeCCCCHHHHHHHHHHHHh-ccceecceeCCCCcHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEecccCc
Confidence 9999999999999999999998854 679999999999999999999874 589999999999 589999999999999
Q ss_pred eeecCCCCCCCCCccchhhhhhhhhcCCCcccccccCCCCcccChHHHHHHHHHHHHHCCCCCEEEecCCCCCCCc----
Q 014785 323 FIAHATKSPEEGSFYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMCINFS---- 398 (418)
Q Consensus 323 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~~I~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~d~---- 398 (418)
+|+....... ..+..+. .. .. ++..+.++++| +|+|+|||.+|+++++||++| |||||||++..|+
T Consensus 317 ~v~~~~~~~~--~~~~~~~--~~--~~--~~~~~~~~~gw-~i~P~Gl~~~L~~~~~~Y~~P-i~ItENG~~~~d~~~~~ 386 (476)
T PRK09589 317 ATKFHEDNPQ--LDYVETR--DL--VS--NPYVKASEWGW-QIDPAGLRYSLNWFWDHYQLP-LFIVENGFGAIDQREAD 386 (476)
T ss_pred ccccCCCCCC--CCccccc--cc--cc--CCCcccCCCCC-ccCcHHHHHHHHHHHHhcCCC-EEEEeCCcccCCCCCcC
Confidence 9975321110 0000000 00 01 23334567889 999999999999999999987 9999999997654
Q ss_pred --hhHHHHHHHHHHHHHHHhc
Q 014785 399 --VEVIIIIGLQFQFLNRINE 417 (418)
Q Consensus 399 --~~~~~~~~~~~~~~~~~~~ 417 (418)
+....|++|+++||.++..
T Consensus 387 g~i~D~~Ri~Yl~~hl~~~~~ 407 (476)
T PRK09589 387 GTVNDHYRIDYLAAHIREMKK 407 (476)
T ss_pred CcccCHHHHHHHHHHHHHHHH
Confidence 3456799999999998863
No 10
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=100.00 E-value=7.9e-103 Score=805.71 Aligned_cols=381 Identities=29% Similarity=0.503 Sum_probs=325.1
Q ss_pred CCCCCCCCceeehcccccccccccCCCCCcCccccccc---c-CCCccc----cC--CCCCccCccccchHHHHHHHHHc
Q 014785 20 SKTDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFT---H-TEGKII----DK--SNGDVAVDHYHRYKEDIDLIAKL 89 (418)
Q Consensus 20 ~~~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~---~-~~~~~~----~~--~~~~~a~d~y~~~~eDi~l~~~l 89 (418)
++.+||++|+||+|||||||||++++||||+|+||+|+ + .++++. ++ .++++||||||||+|||+|||+|
T Consensus 2 ~~~~FP~~FlwG~AtsA~QiEGa~~e~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~EDI~Lm~el 81 (477)
T PRK15014 2 KKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHGVPREITKEVVPGKYYPNHEAVDFYGHYKEDIKLFAEM 81 (477)
T ss_pred CcCCCCCCCEEeeecHHHHhCCCcCCCCCcccHhhccccccccCccccccccccCCcCCCCcccCcccccHHHHHHHHHc
Confidence 45679999999999999999999999999999999998 4 244431 22 26789999999999999999999
Q ss_pred CCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHHHH
Q 014785 90 GFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADT 169 (418)
Q Consensus 90 G~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~ 169 (418)
|+++|||||+||||+|+|.+..+|++||+||+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||+.
T Consensus 82 G~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~ 161 (477)
T PRK15014 82 GFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEV 161 (477)
T ss_pred CCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHH
Confidence 99999999999999999753269999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCcceEEEEccCCccc-----cccCccc-ccc-CCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeE
Q 014785 170 CFASFGDRVKNWITINEPLQT-----AVNGYCT-GIF-APGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNI 242 (418)
Q Consensus 170 ~~~~~~d~v~~w~t~NEp~~~-----~~~gy~~-g~~-~P~~~~~~~~~~~~~~~n~l~Aha~a~~~~r~~~~~~~~~~I 242 (418)
||++|||+|++|+|||||+++ +..||.. |.+ ||+. ....+.++++||+++|||+||+++|++. ++++|
T Consensus 162 ~f~~fgdrVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~--~~~~~~~~~~h~~llAHa~A~~~~~~~~---~~~~I 236 (477)
T PRK15014 162 VFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHE--NPEETMYQVLHHQFVASALAVKAARRIN---PEMKV 236 (477)
T ss_pred HHHHhcCcCCEEEEecCcccccccccccccccccccccCCCC--chhHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeE
Confidence 999999999999999999987 6778874 765 5543 1335689999999999999999999975 68999
Q ss_pred EEEecCcccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhHHHhhccC--CCCCChhhHHhh-cCCCCEEEeecc
Q 014785 243 GLVVDCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQ--LPKFMQKDKELV-RNSLDFVGLNHY 319 (418)
Q Consensus 243 G~~~~~~~~~P~~~~p~d~~AA~~~~~~~~~~fldp~~~G~YP~~~~~~l~~~--lp~~t~~d~~~i-kg~~DFiGiNYY 319 (418)
|+++++.++||.+++|+|++||++.+. .+.+|+||+++|+||+.|++.++++ .|.++++|+++| ++++||||||||
T Consensus 237 Gi~~~~~~~~P~~~~~~D~~Aa~~~~~-~~~~f~d~~~~G~YP~~~~~~~~~~~~~~~~~~~d~~~i~~~~~DFlGiNyY 315 (477)
T PRK15014 237 GCMLAMVPLYPYSCNPDDVMFAQESMR-ERYVFTDVQLRGYYPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYY 315 (477)
T ss_pred EEEEeCceeccCCCCHHHHHHHHHHHH-hcccccccccCCCCCHHHHHHHHhcCCCCCCCHHHHHHHhcCCCCEEEEcce
Confidence 999999999999999999999988773 2345999999999999999999886 388999999999 589999999999
Q ss_pred ccceeecCCCCCCCCCccchhhhhhhhhcCCCcccccccCCCCcccChHHHHHHHHHHHHHCCCCCEEEecCCCCCCCc-
Q 014785 320 TSRFIAHATKSPEEGSFYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMCINFS- 398 (418)
Q Consensus 320 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~~I~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~d~- 398 (418)
+|.+|+...........+.. ... ++..+.+++|| +|+|+|||.+|+++++||++| |||||||++..++
T Consensus 316 t~~~v~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~P-i~ItENG~~~~d~~ 384 (477)
T PRK15014 316 MTNAVKAEGGTGDAISGFEG--------SVP-NPYVKASDWGW-QIDPVGLRYALCELYERYQKP-LFIVENGFGAYDKV 384 (477)
T ss_pred eCeeeccCCCCCCCcccccc--------ccC-CCCcccCCCCC-ccCcHHHHHHHHHHHHhcCCC-EEEeCCCCCCCCCc
Confidence 99999753211000000000 000 23234567888 999999999999999999987 9999999997654
Q ss_pred -----hhHHHHHHHHHHHHHHHhc
Q 014785 399 -----VEVIIIIGLQFQFLNRINE 417 (418)
Q Consensus 399 -----~~~~~~~~~~~~~~~~~~~ 417 (418)
+....|++|+++||.+|.+
T Consensus 385 ~~~g~i~D~~Ri~Yl~~hl~~l~~ 408 (477)
T PRK15014 385 EEDGSINDDYRIDYLRAHIEEMKK 408 (477)
T ss_pred CcCCccCCHHHHHHHHHHHHHHHH
Confidence 3356799999999998864
No 11
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=100.00 E-value=1.8e-104 Score=819.37 Aligned_cols=383 Identities=49% Similarity=0.865 Sum_probs=333.6
Q ss_pred CCCCCCceeehcccccccccccCCCCCcCccccccccCCCccccCCCCCccCccccchHHHHHHHHHcCCCeeeeccccc
Q 014785 22 TDFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWS 101 (418)
Q Consensus 22 ~~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ 101 (418)
.+||++|+||+|||||||||++++||||+|+||.|++.++++.++.++++||||||||+|||+|||+||+++|||||+|+
T Consensus 3 ~~fp~~F~wG~atsa~Q~EG~~~~dGkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~lg~~~yRfsi~W~ 82 (455)
T PF00232_consen 3 KKFPEDFLWGVATSAYQIEGAWNEDGKGPSIWDTFCHEPGKVEDGSTGDVACDHYHRYKEDIALMKELGVNAYRFSISWS 82 (455)
T ss_dssp GGS-TT-EEEEE--HHHHSSSTTSTTSTTBHHHHHHHSTTSSTTSSSSSSTTGHHHHHHHHHHHHHHHT-SEEEEE--HH
T ss_pred CCCCCCCeEEEeceeccccceecCCCCCcccccccccccceeeccccCcccccchhhhhHHHHHHHhhccceeeeecchh
Confidence 46999999999999999999999999999999999998888888888999999999999999999999999999999999
Q ss_pred cccccC-CCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHHHHHHHHhCCcceE
Q 014785 102 RIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKN 180 (418)
Q Consensus 102 ri~p~~-~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~ 180 (418)
||+|+| .| ++|++|+++|+++|++|+++||+|||||+|||+|+||++ +|||+|+++++.|++||+.|+++|||+|++
T Consensus 83 Ri~P~g~~g-~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~-~ggw~~~~~~~~F~~Ya~~~~~~~gd~V~~ 160 (455)
T PF00232_consen 83 RIFPDGFEG-KVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLED-YGGWLNRETVDWFARYAEFVFERFGDRVKY 160 (455)
T ss_dssp HHSTTSSSS-SS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHH-HTGGGSTHHHHHHHHHHHHHHHHHTTTBSE
T ss_pred heeeccccc-ccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceee-cccccCHHHHHHHHHHHHHHHHHhCCCcce
Confidence 999998 68 999999999999999999999999999999999999997 799999999999999999999999999999
Q ss_pred EEEccCCccccccCccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCHHH
Q 014785 181 WITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIED 260 (418)
Q Consensus 181 w~t~NEp~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~n~l~Aha~a~~~~r~~~~~~~~~~IG~~~~~~~~~P~~~~p~d 260 (418)
|+|||||++.+..||+.|.+|||.. +.++.++++||+++|||+||+++|+++ ++++||++++..+++|.+++++|
T Consensus 161 w~T~NEp~~~~~~~y~~g~~~p~~~--~~~~~~~~~h~~l~AHa~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d 235 (455)
T PF00232_consen 161 WITFNEPNVFALLGYLYGGFPPGRD--SLKAFYQAAHNLLLAHAKAVKAIKEKY---PDGKIGIALNFSPFYPLSPSPED 235 (455)
T ss_dssp EEEEETHHHHHHHHHTSSSSTTCSS--THHHHHHHHHHHHHHHHHHHHHHHHHT---CTSEEEEEEEEEEEEESSSSHHH
T ss_pred EEeccccceeecccccccccccccc--ccchhhHHHhhHHHHHHHHHHHHhhcc---cceEEeccccccccCCCCccchh
Confidence 9999999999999999999999964 678899999999999999999999987 79999999999999999988877
Q ss_pred H-HHHHHHHHHhccccccccccCCCChhHHHhhccC--CCCCChhhHHhhcCCCCEEEeeccccceeecCCCCCCCCCcc
Q 014785 261 K-SAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQ--LPKFMQKDKELVRNSLDFVGLNHYTSRFIAHATKSPEEGSFY 337 (418)
Q Consensus 261 ~-~AA~~~~~~~~~~fldp~~~G~YP~~~~~~l~~~--lp~~t~~d~~~ikg~~DFiGiNYY~~~~v~~~~~~~~~~~~~ 337 (418)
. +||++.+++.++||+||+++|+||..++..++++ +|.||++|++.|++++||||||||++.+|+..+..... ...
T Consensus 236 ~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlGiNYYt~~~v~~~~~~~~~-~~~ 314 (455)
T PF00232_consen 236 DVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLGINYYTSRYVRADPNPSSP-PSY 314 (455)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEEEEESEEEEEEESSSSTSS-TTH
T ss_pred hHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhhhccccceeeccCcccccc-ccc
Confidence 7 8889999999999999999999999999999988 99999999999999999999999999999987643211 111
Q ss_pred chhhhhhhhhcCCCcccccccCCCCcccChHHHHHHHHHHHHHCCCCCEEEecCCCCCCCc-----hhHHHHHHHHHHHH
Q 014785 338 EAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMCINFS-----VEVIIIIGLQFQFL 412 (418)
Q Consensus 338 ~~~~~~~~~~~~~g~~~~~~~~~~W~~I~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~d~-----~~~~~~~~~~~~~~ 412 (418)
....... ...++.++.++++| +|+|+|||.+|++++++|++|||+|||||++..++ +....|++|+++||
T Consensus 315 ~~~~~~~----~~~~~~~~~t~~gw-~i~P~Gl~~~L~~l~~~Y~~~pI~ITENG~~~~~~~~~~~v~D~~Ri~yl~~hl 389 (455)
T PF00232_consen 315 DSDAPFG----QPYNPGGPTTDWGW-EIYPEGLRDVLRYLKDRYGNPPIYITENGIGDPDEVDDGKVDDDYRIDYLQDHL 389 (455)
T ss_dssp EEEESEE----EECETSSEBCTTST-BBETHHHHHHHHHHHHHHTSSEEEEEEE---EETTCTTSHBSHHHHHHHHHHHH
T ss_pred cCCcccc----ccccccccccccCc-ccccchHhhhhhhhccccCCCcEEEecccccccccccccCcCcHHHHHHHHHHH
Confidence 1100000 00023345678999 99999999999999999998889999999998875 45688999999999
Q ss_pred HHHhc
Q 014785 413 NRINE 417 (418)
Q Consensus 413 ~~~~~ 417 (418)
.+|.+
T Consensus 390 ~~v~~ 394 (455)
T PF00232_consen 390 NQVLK 394 (455)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98864
No 12
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=100.00 E-value=6.2e-102 Score=797.72 Aligned_cols=379 Identities=31% Similarity=0.532 Sum_probs=329.9
Q ss_pred CCCCCceeehcccccccccccCCCCCcCccccccccCCCccc------------cCC--CCCccCccccchHHHHHHHHH
Q 014785 23 DFPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKII------------DKS--NGDVAVDHYHRYKEDIDLIAK 88 (418)
Q Consensus 23 ~fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~------------~~~--~~~~a~d~y~~~~eDi~l~~~ 88 (418)
+||++|+||+|||||||||++++||||+|+||++++.++++. ++. ++++||||||||+|||+||++
T Consensus 3 ~FP~~FlwG~AtsA~QiEGa~~~~Gkg~siwD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~D~Yhry~eDi~l~~~ 82 (474)
T PRK09852 3 VFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMAVKLGLEKRFQLRDDEFYPSHEAIDFYHRYKEDIALMAE 82 (474)
T ss_pred CCCCCCEEeccchHhhcCCCcCCCCCCCchhhccccCCCcccccccccccccccccCcCCCCccCchhhhhHHHHHHHHH
Confidence 599999999999999999999999999999999988665542 111 678999999999999999999
Q ss_pred cCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHHH
Q 014785 89 LGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYAD 168 (418)
Q Consensus 89 lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~ 168 (418)
||+|+|||||+||||+|+|.+..+|++|+++|+++|++|+++||+|+|||+|||+|+||+++||||+|+++++.|++||+
T Consensus 83 lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~ 162 (474)
T PRK09852 83 MGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYAR 162 (474)
T ss_pred cCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999975326899999999999999999999999999999999999998999999999999999999
Q ss_pred HHHHHhCCcceEEEEccCCccccccCcc-ccc-cCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEe
Q 014785 169 TCFASFGDRVKNWITINEPLQTAVNGYC-TGI-FAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVV 246 (418)
Q Consensus 169 ~~~~~~~d~v~~w~t~NEp~~~~~~gy~-~g~-~~P~~~~~~~~~~~~~~~n~l~Aha~a~~~~r~~~~~~~~~~IG~~~ 246 (418)
.||++|||+|++|+||||||+++..||. .|. +||+.. ..+..++++||+++|||+||+++|++. ++++||+++
T Consensus 163 ~~~~~fgd~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~--~~~~~~~~~hn~llAHa~A~~~~~~~~---~~~~IGi~~ 237 (474)
T PRK09852 163 TCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGEN--QDQVKYQAAHHELVASALATKIAHEVN---PQNQVGCML 237 (474)
T ss_pred HHHHHhcCcCCeEEeecchhhhhccCccccCcccCCCCC--chHhHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEE
Confidence 9999999999999999999999999996 564 588752 345689999999999999999999976 689999999
Q ss_pred cCcccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhHHHhhccC--CCCCChhhHHhhcCCCCEEEeecccccee
Q 014785 247 DCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQ--LPKFMQKDKELVRNSLDFVGLNHYTSRFI 324 (418)
Q Consensus 247 ~~~~~~P~~~~p~d~~AA~~~~~~~~~~fldp~~~G~YP~~~~~~l~~~--lp~~t~~d~~~ikg~~DFiGiNYY~~~~v 324 (418)
+..+++|.+++|+|++||++.+ +.+.||+||+++|+||+.|++.++++ +|.|+++|+++|++++||||||||+|.+|
T Consensus 238 ~~~~~~P~~~~~~d~~AA~~~~-~~~~~~~d~~~~G~YP~~~~~~~~~~~~~p~~~~~d~~~i~~~~DFlGiNyYt~~~v 316 (474)
T PRK09852 238 AGGNFYPYSCKPEDVWAALEKD-RENLFFIDVQARGAYPAYSARVFREKGVTIDKAPGDDEILKNTVDFVSFSYYASRCA 316 (474)
T ss_pred eCCeeeeCCCCHHHHHHHHHHH-HHhhhhcchhhCCCccHHHHHHHHhcCCCCCCCHHHHHHhcCCCCEEEEccccCeec
Confidence 9999999999999999998877 45789999999999999999999865 79999999999999999999999999999
Q ss_pred ecCCCCCCCCCccchhhhhhhhhcCCCcccccccCCCCcccChHHHHHHHHHHHHHCCCCCEEEecCCCCCCCc------
Q 014785 325 AHATKSPEEGSFYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMCINFS------ 398 (418)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~~I~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~d~------ 398 (418)
+....... .. .... ... .. +|..+.+++|| +|+|+|||.+|+++++||++| |||||||++..|+
T Consensus 317 ~~~~~~~~--~~-~~~~-~~~--~~--~p~~~~~~~gw-~i~P~Gl~~~l~~~~~~Y~~P-i~ItENG~~~~d~~~~~g~ 386 (474)
T PRK09852 317 SAEMNANN--SS-AANV-VKS--LR--NPYLQVSDWGW-GIDPLGLRITMNMMYDRYQKP-LFLVENGLGAKDEIAANGE 386 (474)
T ss_pred ccCCCCCC--CC-cCCc-eec--cc--CCCcccCCCCC-eeChHHHHHHHHHHHHhcCCC-EEEeCCCCCCCCCcCCCCc
Confidence 75321100 00 0000 000 01 23345677889 999999999999999999987 9999999997654
Q ss_pred hhHHHHHHHHHHHHHHHhc
Q 014785 399 VEVIIIIGLQFQFLNRINE 417 (418)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~ 417 (418)
+....|++|+++||.+|.+
T Consensus 387 i~D~~Ri~Yl~~hl~~~~~ 405 (474)
T PRK09852 387 INDDYRISYLREHIRAMGE 405 (474)
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 3456799999999999864
No 13
>TIGR03356 BGL beta-galactosidase.
Probab=100.00 E-value=1.1e-100 Score=783.20 Aligned_cols=371 Identities=43% Similarity=0.765 Sum_probs=335.7
Q ss_pred CCCCceeehcccccccccccCCCCCcCccccccccCCCccccCCCCCccCccccchHHHHHHHHHcCCCeeeeccccccc
Q 014785 24 FPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRI 103 (418)
Q Consensus 24 fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri 103 (418)
||++|+||+|||||||||+++++|||+|+||.+++.++++.++.++++||||||+|+|||++||+||+++|||||+||||
T Consensus 1 fp~~FlwG~atsa~Q~EG~~~~~gkg~s~wd~~~~~~~~~~~~~~~~~a~d~y~~y~eDi~l~~~~G~~~~R~si~Wsri 80 (427)
T TIGR03356 1 FPKDFLWGVATASYQIEGAVNEDGRGPSIWDTFSHTPGKVKDGDTGDVACDHYHRYEEDVALMKELGVDAYRFSIAWPRI 80 (427)
T ss_pred CCCCCEEeeechHHhhCCCcCCCCCccchhheeccCCCcccCCCCCCccccHHHhHHHHHHHHHHcCCCeEEcccchhhc
Confidence 89999999999999999999999999999999988777666666889999999999999999999999999999999999
Q ss_pred cccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHHHHHHHHhCCcceEEEE
Q 014785 104 FPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWIT 183 (418)
Q Consensus 104 ~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t 183 (418)
+|+|.| ++|++++++|+++|++|+++||+|||||+|||+|+||+++ |||.|+++++.|++||+.|+++|||+|++|+|
T Consensus 81 ~p~g~~-~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~-gGw~~~~~~~~f~~ya~~~~~~~~d~v~~w~t 158 (427)
T TIGR03356 81 FPEGTG-PVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR-GGWLNRDTAEWFAEYAAVVAERLGDRVKHWIT 158 (427)
T ss_pred ccCCCC-CcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc-CCCCChHHHHHHHHHHHHHHHHhCCcCCEEEE
Confidence 999768 8999999999999999999999999999999999999987 99999999999999999999999999999999
Q ss_pred ccCCccccccCccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCHHHHHH
Q 014785 184 INEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIEDKSA 263 (418)
Q Consensus 184 ~NEp~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~n~l~Aha~a~~~~r~~~~~~~~~~IG~~~~~~~~~P~~~~p~d~~A 263 (418)
||||++.+..||..|.+||+.. +.+..++++||+++|||+||+++|++. ++++||++++..+++|.+++|+|+.|
T Consensus 159 ~NEp~~~~~~~y~~G~~~P~~~--~~~~~~~~~hnll~Aha~A~~~~~~~~---~~~~IGi~~~~~~~~P~~~~~~d~~a 233 (427)
T TIGR03356 159 LNEPWCSAFLGYGLGVHAPGLR--DLRAALQAAHHLLLAHGLAVQALRANG---PGAQVGIVLNLTPVYPASDSPEDVAA 233 (427)
T ss_pred ecCcceecccchhhccCCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCeEEEEEeCCeeeeCCCCHHHHHH
Confidence 9999999999999999999853 235579999999999999999999976 68999999999999999999999999
Q ss_pred HHHHHHHhccccccccccCCCChhHHHhhccCCCCCChhhHHhhcCCCCEEEeeccccceeecCCCCCCCCCccchhhhh
Q 014785 264 AARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAHATKSPEEGSFYEAQEME 343 (418)
Q Consensus 264 A~~~~~~~~~~fldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ikg~~DFiGiNYY~~~~v~~~~~~~~~~~~~~~~~~~ 343 (418)
|++.++++++||+||++.|+||+.|++.++ .+|.||++|++++++++||||||||++.+|+...... ....
T Consensus 234 a~~~~~~~~~~f~d~~~~G~yP~~~~~~l~-~~p~~~~~d~~~l~~~~DFiGiNyY~~~~v~~~~~~~---~~~~----- 304 (427)
T TIGR03356 234 ARRADGLLNRWFLDPLLKGRYPEDLLEYLG-DAPFVQDGDLETIAQPLDFLGINYYTRSVVAADPGTG---AGFV----- 304 (427)
T ss_pred HHHHHHHHhhhhhHHHhCCCCCHHHHHHhc-cCCCCCHHHHHHhcCCCCEEEEeccccceeccCCCCC---CCcc-----
Confidence 999999989999999999999999999997 4799999999999999999999999999997532110 0000
Q ss_pred hhhhcCCCcccccccCCCCcccChHHHHHHHHHHHHHCCCCCEEEecCCCCCCCc-----hhHHHHHHHHHHHHHHHhc
Q 014785 344 RLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMCINFS-----VEVIIIIGLQFQFLNRINE 417 (418)
Q Consensus 344 ~~~~~~~g~~~~~~~~~~W~~I~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~d~-----~~~~~~~~~~~~~~~~~~~ 417 (418)
.. ++..+.++++| +|+|+|||.+|+++++||++|||+|||||++..|+ +....|++|+++||.++.+
T Consensus 305 ----~~--~~~~~~~~~gw-~i~P~Gl~~~L~~~~~rY~~ppi~ITENG~~~~d~~~~g~~~D~~Ri~yl~~hl~~~~~ 376 (427)
T TIGR03356 305 ----EV--PEGVPKTAMGW-EVYPEGLYDLLLRLKEDYPGPPIYITENGAAFDDEVTDGEVHDPERIAYLRDHLAALAR 376 (427)
T ss_pred ----cc--CCCCCcCCCCC-eechHHHHHHHHHHHHhcCCCCEEEeCCCCCcCCCCcCCCcCCHHHHHHHHHHHHHHHH
Confidence 00 12224567889 99999999999999999998789999999997664 3467799999999998864
No 14
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.38 E-value=1.5e-12 Score=131.85 Aligned_cols=109 Identities=23% Similarity=0.443 Sum_probs=88.9
Q ss_pred cchHHHHHHHHHcCCCeeee-ccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhc----
Q 014785 77 HRYKEDIDLIAKLGFDAYRF-SISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESM---- 151 (418)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~-si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~---- 151 (418)
..+++|+++|+++|+|++|+ .++|+++||++ | ++| ++++|++|+.+.++||++++.+.+...|.||.+++
T Consensus 10 e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~e-G-~yd---F~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~ 84 (374)
T PF02449_consen 10 EEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEE-G-QYD---FSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEIL 84 (374)
T ss_dssp CHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBT-T-B------HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhccCCC-C-eee---cHHHHHHHHHHHhccCeEEEEecccccccchhhhccccc
Confidence 46899999999999999996 57999999998 9 999 88899999999999999999999999999998642
Q ss_pred -----------CC-----CCChHhHHHHHHHHHHHHHHhCCc--ceEEEEccCCccc
Q 014785 152 -----------GG-----WLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPLQT 190 (418)
Q Consensus 152 -----------gg-----~~~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~~~ 190 (418)
|+ ..+|...+.+.++++.++++|++. |-.|.+.|||...
T Consensus 85 ~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~ 141 (374)
T PF02449_consen 85 PVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQIDNEPGYH 141 (374)
T ss_dssp -B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCT
T ss_pred ccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEeccccCcC
Confidence 22 234667888889999999999985 8899999999874
No 15
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=99.31 E-value=3.3e-10 Score=108.83 Aligned_cols=84 Identities=18% Similarity=0.382 Sum_probs=72.9
Q ss_pred cccccccccCCCCccChhHHHHHHHHHHHHHHcCCee--EEEeccCCCchhhHhhcCCCCChHhHHHHHHHHHHHHHHhC
Q 014785 98 ISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQP--YVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (418)
Q Consensus 98 i~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p--~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 175 (418)
+.|++++|++ | .+| ++..|.+++.|+++||++ .+.+.|...|.|+... + .++..+.+.+|++.+++||+
T Consensus 1 ~kW~~~ep~~-G-~~n---~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~--~--~~~~~~~~~~~i~~v~~ry~ 71 (254)
T smart00633 1 MKWDSTEPSR-G-QFN---FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNL--S--KETLLARLENHIKTVVGRYK 71 (254)
T ss_pred CCcccccCCC-C-ccC---hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcC--C--HHHHHHHHHHHHHHHHHHhC
Confidence 3699999998 9 999 777889999999999995 4456777899998742 2 56788999999999999999
Q ss_pred CcceEEEEccCCccc
Q 014785 176 DRVKNWITINEPLQT 190 (418)
Q Consensus 176 d~v~~w~t~NEp~~~ 190 (418)
++|..|.++|||...
T Consensus 72 g~i~~wdV~NE~~~~ 86 (254)
T smart00633 72 GKIYAWDVVNEALHD 86 (254)
T ss_pred CcceEEEEeeecccC
Confidence 999999999999864
No 16
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=99.26 E-value=2.5e-11 Score=117.08 Aligned_cols=110 Identities=22% Similarity=0.334 Sum_probs=91.8
Q ss_pred chHHHHHHHHHcCCCeeeecccccccc-ccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCC-C
Q 014785 78 RYKEDIDLIAKLGFDAYRFSISWSRIF-PDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGW-L 155 (418)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~-p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~-~ 155 (418)
..++|++.|+++|+|++|+.|.|..++ |.+.+ .++...++.++++|+.|.++||.+|++||+. |.|.... +++ .
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~-~~~~~~~~~ld~~v~~a~~~gi~vild~h~~--~~w~~~~-~~~~~ 97 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGY-NYDETYLARLDRIVDAAQAYGIYVILDLHNA--PGWANGG-DGYGN 97 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTT-SBTHHHHHHHHHHHHHHHHTT-EEEEEEEES--TTCSSST-STTTT
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCc-cccHHHHHHHHHHHHHHHhCCCeEEEEeccC--ccccccc-ccccc
Confidence 568999999999999999999998888 55534 6999999999999999999999999999874 7774432 333 3
Q ss_pred ChHhHHHHHHHHHHHHHHhCC--cceEEEEccCCcccc
Q 014785 156 NKEIVKYFEIYADTCFASFGD--RVKNWITINEPLQTA 191 (418)
Q Consensus 156 ~~~~~~~f~~ya~~~~~~~~d--~v~~w~t~NEp~~~~ 191 (418)
.....+.|.++++.++++|++ .|..|.++|||....
T Consensus 98 ~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~ 135 (281)
T PF00150_consen 98 NDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGN 135 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTT
T ss_pred chhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccC
Confidence 455788899999999999954 588999999999753
No 17
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.05 E-value=3.4e-08 Score=97.78 Aligned_cols=228 Identities=16% Similarity=0.212 Sum_probs=134.8
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCC---CchhhHhhcCCCCC
Q 014785 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD---LPLHLHESMGGWLN 156 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~---~P~~l~~~~gg~~~ 156 (418)
++=+++||+.|+|++|+-+ | +-|...| ..| ++.-..+..+.+++||+.++++|.-| =|.--. .-..|.+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-w--v~P~~~g-~~~---~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~-~P~aW~~ 98 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-W--VNPYDGG-YND---LEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQN-KPAAWAN 98 (332)
T ss_dssp --HHHHHHHTT--EEEEEE----SS-TTTT-TTS---HHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B---TTCTS
T ss_pred CCHHHHHHhcCCCeEEEEe-c--cCCcccc-cCC---HHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCC-CCccCCC
Confidence 3447999999999999988 5 4455425 556 78888999999999999999998533 232111 1257877
Q ss_pred ---hHhHHHHHHHHHHHHHHhC---CcceEEEEccCCccccccCccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHH
Q 014785 157 ---KEIVKYFEIYADTCFASFG---DRVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVY 230 (418)
Q Consensus 157 ---~~~~~~f~~ya~~~~~~~~---d~v~~w~t~NEp~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~n~l~Aha~a~~~~ 230 (418)
.+..+.-.+|.+.+.+.++ -.++++.+=||.+.-.. +|.|.. .-+.-+-.++.|-.+| +
T Consensus 99 ~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gml-------wp~g~~-----~~~~~~a~ll~ag~~A---V 163 (332)
T PF07745_consen 99 LSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGML-------WPDGKP-----SNWDNLAKLLNAGIKA---V 163 (332)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGEST-------BTTTCT-----T-HHHHHHHHHHHHHH---H
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCcccccccc-------CcCCCc-----cCHHHHHHHHHHHHHH---H
Confidence 5677888899999888774 46899999999885332 444431 1233344466554454 4
Q ss_pred HhhhcCCCCCeEEEEecCcccccCCCCHHHHHHHHHHHHHhccccccccccCCCChhHHHhhccCCCCCChhhHHhhcCC
Q 014785 231 QRKYKDKQGGNIGLVVDCEWAEANSDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNS 310 (418)
Q Consensus 231 r~~~~~~~~~~IG~~~~~~~~~P~~~~p~d~~AA~~~~~~~~~~fldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ikg~ 310 (418)
|+.. ++.+|.+.+.. +.|.... .||.|-+. .....
T Consensus 164 r~~~---p~~kV~lH~~~---------~~~~~~~--------~~~f~~l~-------------------------~~g~d 198 (332)
T PF07745_consen 164 REVD---PNIKVMLHLAN---------GGDNDLY--------RWFFDNLK-------------------------AAGVD 198 (332)
T ss_dssp HTHS---STSEEEEEES----------TTSHHHH--------HHHHHHHH-------------------------HTTGG
T ss_pred HhcC---CCCcEEEEECC---------CCchHHH--------HHHHHHHH-------------------------hcCCC
Confidence 5554 67888655442 1222111 12222111 11235
Q ss_pred CCEEEeeccccceeecCCCCCCCCCccchhhhhhhhhcCCCcccccccCCCCcccChHHHHHHHHHHHHHCCCCCEEEec
Q 014785 311 LDFVGLNHYTSRFIAHATKSPEEGSFYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTE 390 (418)
Q Consensus 311 ~DFiGiNYY~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~W~~I~P~GL~~~L~~i~~rY~~ppI~ITE 390 (418)
.|.||+|||.- | .-....|+..|+.+.+||++| |+|+|
T Consensus 199 ~DviGlSyYP~----------------------------------------w-~~~l~~l~~~l~~l~~ry~K~-V~V~E 236 (332)
T PF07745_consen 199 FDVIGLSYYPF----------------------------------------W-HGTLEDLKNNLNDLASRYGKP-VMVVE 236 (332)
T ss_dssp -SEEEEEE-ST----------------------------------------T-ST-HHHHHHHHHHHHHHHT-E-EEEEE
T ss_pred cceEEEecCCC----------------------------------------C-cchHHHHHHHHHHHHHHhCCe-eEEEe
Confidence 69999999931 1 013467899999999999986 99999
Q ss_pred CCCCCC----Cchh---------------HHHHHHHHHHHHHHHhc
Q 014785 391 NGMCIN----FSVE---------------VIIIIGLQFQFLNRINE 417 (418)
Q Consensus 391 NG~~~~----d~~~---------------~~~~~~~~~~~~~~~~~ 417 (418)
.|++.. |... ..-+.+++.+.+++|++
T Consensus 237 t~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~ 282 (332)
T PF07745_consen 237 TGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKN 282 (332)
T ss_dssp E---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 997644 2111 12377777777777764
No 18
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.68 E-value=4.4e-08 Score=104.46 Aligned_cols=119 Identities=22% Similarity=0.404 Sum_probs=94.2
Q ss_pred chHHHHHHHHHcCCCeeeec-cccccccccCCCCccChhHHHHHHHH-HHHHHHcCCeeEEEe-ccCCCchhhHhhc---
Q 014785 78 RYKEDIDLIAKLGFDAYRFS-ISWSRIFPDGLGTKINMEGITFYNNI-IDALLQKGIQPYVTL-YHWDLPLHLHESM--- 151 (418)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~s-i~W~ri~p~~~g~~~n~~~~~~y~~~-i~~l~~~gi~p~~tL-~h~~~P~~l~~~~--- 151 (418)
-|++|+++||++|+|++|.+ ++|++++|+. | ++| +.+.|.. ++.+.+.||..|+.- .....|.|+..++
T Consensus 31 ~w~ddl~~mk~~G~N~V~ig~faW~~~eP~e-G-~fd---f~~~D~~~l~~a~~~Gl~vil~t~P~g~~P~Wl~~~~Pei 105 (673)
T COG1874 31 TWMDDLRKMKALGLNTVRIGYFAWNLHEPEE-G-KFD---FTWLDEIFLERAYKAGLYVILRTGPTGAPPAWLAKKYPEI 105 (673)
T ss_pred HHHHHHHHHHHhCCCeeEeeeEEeeccCccc-c-ccC---cccchHHHHHHHHhcCceEEEecCCCCCCchHHhcCChhh
Confidence 36789999999999999995 6999999998 9 999 5688888 999999999999998 7788999998653
Q ss_pred ------------CCCCChHhH-HHHHHHHHH----HHHH-hCCc--ceEEEEccCCcc-ccccCccccccC
Q 014785 152 ------------GGWLNKEIV-KYFEIYADT----CFAS-FGDR--VKNWITINEPLQ-TAVNGYCTGIFA 201 (418)
Q Consensus 152 ------------gg~~~~~~~-~~f~~ya~~----~~~~-~~d~--v~~w~t~NEp~~-~~~~gy~~g~~~ 201 (418)
|+|.+-... ..|..|++. +.+| ||+. |-.|.+-||-.. .+.+.|+...|+
T Consensus 106 L~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dneY~~~~~~~~~~~~~f~ 176 (673)
T COG1874 106 LAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDNEYGGHPCYCDYCQAAFR 176 (673)
T ss_pred eEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccCccCCccccccccHHHHH
Confidence 667443322 246666666 7788 8774 889999999887 566665555443
No 19
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=98.39 E-value=9.7e-05 Score=73.45 Aligned_cols=253 Identities=19% Similarity=0.197 Sum_probs=150.5
Q ss_pred CCCCceeehcccccccccccCCCCCcCccccccccCCCccccCCCCCccCccccchHHHHHHHHHcCCCeeee--ccccc
Q 014785 24 FPPNFVFGVATSAYQIEGACEEGNRGASIWDDFTHTEGKIIDKSNGDVAVDHYHRYKEDIDLIAKLGFDAYRF--SISWS 101 (418)
Q Consensus 24 fp~~FlwG~atsa~Q~EG~~~~~gk~~s~wd~~~~~~~~~~~~~~~~~a~d~y~~~~eDi~l~~~lG~~~~R~--si~W~ 101 (418)
.+.+|.+|+|.++.++++.. .| ..+-.--+|.+-. ...|.
T Consensus 6 ~~~~f~~G~av~~~~~~~~~----------------------------------~~----~~~~~~~Fn~~t~eN~~Kw~ 47 (320)
T PF00331_consen 6 AKHKFPFGAAVNAQQLEDDP----------------------------------RY----RELFAKHFNSVTPENEMKWG 47 (320)
T ss_dssp HCTTTEEEEEEBGGGHTHHH----------------------------------HH----HHHHHHH-SEEEESSTTSHH
T ss_pred HhccCCEEEEechhHcCCcH----------------------------------HH----HHHHHHhCCeeeeccccchh
Confidence 45688999999998887731 01 1111123444444 47899
Q ss_pred cccccCCCCccChhHHHHHHHHHHHHHHcCCeeEE--EeccCCCchhhHhhcCCCCChH---hHHHHHHHHHHHHHHhCC
Q 014785 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV--TLYHWDLPLHLHESMGGWLNKE---IVKYFEIYADTCFASFGD 176 (418)
Q Consensus 102 ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~--tL~h~~~P~~l~~~~gg~~~~~---~~~~f~~ya~~~~~~~~d 176 (418)
.++|.+ | .+| ++..|++++-++++||++-- .+.|--.|.|+... .-+...+ ......+|.+.+++||++
T Consensus 48 ~~e~~~-g-~~~---~~~~D~~~~~a~~~g~~vrGH~LvW~~~~P~w~~~~-~~~~~~~~~~~~~~l~~~I~~v~~~y~~ 121 (320)
T PF00331_consen 48 SIEPEP-G-RFN---FESADAILDWARENGIKVRGHTLVWHSQTPDWVFNL-ANGSPDEKEELRARLENHIKTVVTRYKD 121 (320)
T ss_dssp HHESBT-T-BEE----HHHHHHHHHHHHTT-EEEEEEEEESSSS-HHHHTS-TTSSBHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhcCCC-C-ccC---ccchhHHHHHHHhcCcceeeeeEEEcccccceeeec-cCCCcccHHHHHHHHHHHHHHHHhHhcc
Confidence 999998 8 999 67799999999999999874 44566789999853 1233333 788999999999999995
Q ss_pred --cceEEEEccCCccccccCccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEecCcccccC
Q 014785 177 --RVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCEWAEAN 254 (418)
Q Consensus 177 --~v~~w~t~NEp~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~n~l~Aha~a~~~~r~~~~~~~~~~IG~~~~~~~~~P~ 254 (418)
+|..|=++|||..... .+-+.. ....++++-. ---..|.+..|+.. |+.+.=+.-... ..+
T Consensus 122 ~g~i~~WDVvNE~i~~~~-------~~~~~r---~~~~~~~lG~--~yi~~aF~~A~~~~---P~a~L~~NDy~~-~~~- 184 (320)
T PF00331_consen 122 KGRIYAWDVVNEAIDDDG-------NPGGLR---DSPWYDALGP--DYIADAFRAAREAD---PNAKLFYNDYNI-ESP- 184 (320)
T ss_dssp TTTESEEEEEES-B-TTS-------SSSSBC---TSHHHHHHTT--CHHHHHHHHHHHHH---TTSEEEEEESST-TST-
T ss_pred ccceEEEEEeeecccCCC-------cccccc---CChhhhcccH--hHHHHHHHHHHHhC---CCcEEEeccccc-cch-
Confidence 8999999999975432 001111 1112222210 01235666667765 566554422211 111
Q ss_pred CCCHHHHHHHHHHHHHhccccccccccCCCChhHHHhhccCCCCCChhhHHhhcCCCCEEEeeccccceeecCCCCCCCC
Q 014785 255 SDKIEDKSAAARRLDFQIGWYLHPIYYGDYPEVMRNNLGDQLPKFMQKDKELVRNSLDFVGLNHYTSRFIAHATKSPEEG 334 (418)
Q Consensus 255 ~~~p~d~~AA~~~~~~~~~~fldp~~~G~YP~~~~~~l~~~lp~~t~~d~~~ikg~~DFiGiNYY~~~~v~~~~~~~~~~ 334 (418)
+ ++ +.+. .+.+.+ ..-..++|=||++-.-..
T Consensus 185 -----~----k~-~~~~---------------~lv~~l------------~~~gvpIdgIG~Q~H~~~------------ 215 (320)
T PF00331_consen 185 -----A----KR-DAYL---------------NLVKDL------------KARGVPIDGIGLQSHFDA------------ 215 (320)
T ss_dssp -----H----HH-HHHH---------------HHHHHH------------HHTTHCS-EEEEEEEEET------------
T ss_pred -----H----HH-HHHH---------------HHHHHH------------HhCCCccceechhhccCC------------
Confidence 1 11 1110 011111 111125898998654110
Q ss_pred CccchhhhhhhhhcCCCcccccccCCCCcccChHHHHHHHHHHHHHCCCCCEEEecCCCCCCCc----hhHHHHHHHHHH
Q 014785 335 SFYEAQEMERLVEWEGGEVIGEKAASEWLYVVPWGLRKVLNYIAKTYNNPPIYVTENGMCINFS----VEVIIIIGLQFQ 410 (418)
Q Consensus 335 ~~~~~~~~~~~~~~~~g~~~~~~~~~~W~~I~P~GL~~~L~~i~~rY~~ppI~ITENG~~~~d~----~~~~~~~~~~~~ 410 (418)
+. . |..+...|+++.+ .+.| |.|||.-+...+. .....+.+++.+
T Consensus 216 --------------------------~~-~--~~~i~~~l~~~~~-~Gl~-i~ITElDv~~~~~~~~~~~~~~qA~~~~~ 264 (320)
T PF00331_consen 216 --------------------------GY-P--PEQIWNALDRFAS-LGLP-IHITELDVRDDDNPPDAEEEEAQAEYYRD 264 (320)
T ss_dssp --------------------------TS-S--HHHHHHHHHHHHT-TTSE-EEEEEEEEESSSTTSCHHHHHHHHHHHHH
T ss_pred --------------------------CC-C--HHHHHHHHHHHHH-cCCc-eEEEeeeecCCCCCcchHHHHHHHHHHHH
Confidence 00 1 6889999999854 6766 9999998876653 235668888888
Q ss_pred HHHHHhc
Q 014785 411 FLNRINE 417 (418)
Q Consensus 411 ~~~~~~~ 417 (418)
+++++.+
T Consensus 265 ~~~~~~~ 271 (320)
T PF00331_consen 265 FLTACFS 271 (320)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887654
No 20
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=98.08 E-value=1.2e-05 Score=84.40 Aligned_cols=142 Identities=21% Similarity=0.289 Sum_probs=80.7
Q ss_pred chHHHHHHHH-HcCCCeeeec--c--ccccccc-cCCCC-ccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhh
Q 014785 78 RYKEDIDLIA-KLGFDAYRFS--I--SWSRIFP-DGLGT-KINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHES 150 (418)
Q Consensus 78 ~~~eDi~l~~-~lG~~~~R~s--i--~W~ri~p-~~~g~-~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~ 150 (418)
.+++.+..++ ++||+.+||- + +..-... ++.|. .+| +...|+++|.|+++||+|+|.|.. +|.++...
T Consensus 40 ~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Yn---f~~lD~i~D~l~~~g~~P~vel~f--~p~~~~~~ 114 (486)
T PF01229_consen 40 DWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYN---FTYLDQILDFLLENGLKPFVELGF--MPMALASG 114 (486)
T ss_dssp HHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE-----HHHHHHHHHHHHCT-EEEEEE-S--B-GGGBSS
T ss_pred HHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCC---hHHHHHHHHHHHHcCCEEEEEEEe--chhhhcCC
Confidence 3667776665 9999999986 3 3332322 23231 278 899999999999999999999975 77776422
Q ss_pred ------cCCCC-ChHhHHHHHHHHHHHHHH----hCC-cce--EEEEccCCccccccCccccccCCCCCCCCCChHHHHH
Q 014785 151 ------MGGWL-NKEIVKYFEIYADTCFAS----FGD-RVK--NWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVA 216 (418)
Q Consensus 151 ------~gg~~-~~~~~~~f~~ya~~~~~~----~~d-~v~--~w~t~NEp~~~~~~gy~~g~~~P~~~~~~~~~~~~~~ 216 (418)
+.|+. .|+..+.+.++++.+++| ||. .|. +|.+||||++..+. ..+ +..+ -
T Consensus 115 ~~~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~-------~~~----~~~e----y 179 (486)
T PF01229_consen 115 YQTVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFW-------WDG----TPEE----Y 179 (486)
T ss_dssp --EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTS-------GGG-----HHH----H
T ss_pred CCccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCccccc-------CCC----CHHH----H
Confidence 12222 356677777777666655 552 355 67999999985321 111 1111 2
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 014785 217 HHQILAHAAAFSVYQRKYKDKQGGNIGLV 245 (418)
Q Consensus 217 ~n~l~Aha~a~~~~r~~~~~~~~~~IG~~ 245 (418)
..+. ..+++++|+.. |..+||--
T Consensus 180 ~~ly---~~~~~~iK~~~---p~~~vGGp 202 (486)
T PF01229_consen 180 FELY---DATARAIKAVD---PELKVGGP 202 (486)
T ss_dssp HHHH---HHHHHHHHHH----TTSEEEEE
T ss_pred HHHH---HHHHHHHHHhC---CCCcccCc
Confidence 2233 34566677765 68999854
No 21
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.05 E-value=0.00041 Score=74.93 Aligned_cols=94 Identities=20% Similarity=0.205 Sum_probs=65.3
Q ss_pred cchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHh-------
Q 014785 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHE------- 149 (418)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~------- 149 (418)
..+..|+++||++|+|++|+|- .|.. ..+++.|=+.||-++.-+.-+....|+..
T Consensus 313 ~~~~~d~~l~K~~G~N~vR~sh-----~p~~-------------~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~ 374 (604)
T PRK10150 313 VLNVHDHNLMKWIGANSFRTSH-----YPYS-------------EEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNK 374 (604)
T ss_pred HHHHHHHHHHHHCCCCEEEecc-----CCCC-------------HHHHHHHHhcCcEEEEeccccccccccccccccccc
Confidence 4578899999999999999962 2322 15677888999988866533222222210
Q ss_pred hcCCCC----ChHhHHHHHHHHHHHHHHhCCc--ceEEEEccCCc
Q 014785 150 SMGGWL----NKEIVKYFEIYADTCFASFGDR--VKNWITINEPL 188 (418)
Q Consensus 150 ~~gg~~----~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~ 188 (418)
....|. +++..+.+.+-++.+++++.++ |-.|.+.||+.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NHPSIi~Ws~gNE~~ 419 (604)
T PRK10150 375 PKETYSEEAVNGETQQAHLQAIRELIARDKNHPSVVMWSIANEPA 419 (604)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHhccCCceEEEEeeccCCC
Confidence 001222 3567788889899999999875 88999999963
No 22
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=98.04 E-value=1.8e-05 Score=81.17 Aligned_cols=118 Identities=20% Similarity=0.173 Sum_probs=85.8
Q ss_pred cCccccch-----HHHHHHHHHcCCCeeeeccccccccccC--CCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 014785 72 AVDHYHRY-----KEDIDLIAKLGFDAYRFSISWSRIFPDG--LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (418)
Q Consensus 72 a~d~y~~~-----~eDi~l~~~lG~~~~R~si~W~ri~p~~--~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P 144 (418)
..-...+| ++|+..||+.|+|++|+.+.|-.+.+.. .....+...+.+.+++|+.+++.||.+++.||+..-+
T Consensus 63 ~~~~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~ 142 (407)
T COG2730 63 QGLLESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGG 142 (407)
T ss_pred cccchhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCC
Confidence 34445566 8999999999999999999865555432 1102324445699999999999999999999986632
Q ss_pred hhhHhhc---CCCC-ChHhHHHHHHHHHHHHHHhCCc--ceEEEEccCCcc
Q 014785 145 LHLHESM---GGWL-NKEIVKYFEIYADTCFASFGDR--VKNWITINEPLQ 189 (418)
Q Consensus 145 ~~l~~~~---gg~~-~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~~ 189 (418)
.--.+.. +.+. ....++++.+-.+.++.||++. |-...++|||+.
T Consensus 143 ~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 143 NNGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINEPNG 193 (407)
T ss_pred CCCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecCCcc
Confidence 3222221 1222 3457799999999999999874 555789999996
No 23
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=97.75 E-value=0.00019 Score=71.34 Aligned_cols=109 Identities=12% Similarity=0.144 Sum_probs=74.1
Q ss_pred chHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEec--------cCCCchhhHh
Q 014785 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY--------HWDLPLHLHE 149 (418)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~--------h~~~P~~l~~ 149 (418)
.|++-++.||++|+|++-+-|.|.-.||.+ | ++|..|..=.+++|+.++++|+.+++-.- .-.+|.||..
T Consensus 25 ~W~~~l~k~ka~G~n~v~~yv~W~~he~~~-g-~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~ 102 (319)
T PF01301_consen 25 YWRDRLQKMKAAGLNTVSTYVPWNLHEPEE-G-QFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLR 102 (319)
T ss_dssp GHHHHHHHHHHTT-SEEEEE--HHHHSSBT-T-B---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGG
T ss_pred HHHHHHHHHHhCCcceEEEeccccccCCCC-C-cccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhc
Confidence 477889999999999999999999999998 9 99999988899999999999999887532 1358999986
Q ss_pred hcCCC---CChHhHHHHHHHHHHHHHHhC-------CcceEEEEccCCc
Q 014785 150 SMGGW---LNKEIVKYFEIYADTCFASFG-------DRVKNWITINEPL 188 (418)
Q Consensus 150 ~~gg~---~~~~~~~~f~~ya~~~~~~~~-------d~v~~w~t~NEp~ 188 (418)
+.+.. .++...+.-.+|.+.+++... .-|-...+=||..
T Consensus 103 ~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg 151 (319)
T PF01301_consen 103 KPDIRLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYG 151 (319)
T ss_dssp STTS-SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGG
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhC
Confidence 63332 235566666666666665553 3466677777744
No 24
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=97.35 E-value=0.022 Score=55.09 Aligned_cols=142 Identities=14% Similarity=0.212 Sum_probs=82.6
Q ss_pred HHHHHHHHcCCCeeeeccccccccccC-CCC----ccChhHHHHHHHHHHHHHHcCCeeEEEecc---CCCchhhHhhcC
Q 014785 81 EDIDLIAKLGFDAYRFSISWSRIFPDG-LGT----KINMEGITFYNNIIDALLQKGIQPYVTLYH---WDLPLHLHESMG 152 (418)
Q Consensus 81 eDi~l~~~lG~~~~R~si~W~ri~p~~-~g~----~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h---~~~P~~l~~~~g 152 (418)
+=++.+|+.|+|.+|+-| |. -|.. .|. ..| .++.--++-..+++.||++++..|. |.=|..- ++-.
T Consensus 67 D~~~iLK~~GvNyvRlRv-wn--dP~dsngn~yggGnn--D~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ-~kPk 140 (403)
T COG3867 67 DALQILKNHGVNYVRLRV-WN--DPYDSNGNGYGGGNN--DLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQ-KKPK 140 (403)
T ss_pred HHHHHHHHcCcCeEEEEE-ec--CCccCCCCccCCCcc--hHHHHHHHHHHHHhcCcEEEeeccchhhccChhhc-CCcH
Confidence 347999999999999976 21 1221 110 222 1555666777889999999999883 5555432 2224
Q ss_pred CCCC---hHhHHHHHHHHHHHHHHh---CCcceEEEEccCCccccccCccccccCCCCCCCCCChHHHHHHHHHHHHHHH
Q 014785 153 GWLN---KEIVKYFEIYADTCFASF---GDRVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAA 226 (418)
Q Consensus 153 g~~~---~~~~~~f~~ya~~~~~~~---~d~v~~w~t~NEp~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~n~l~Aha~a 226 (418)
.|.+ .+...+.-+|.+.+.+.+ |=....-.+=||-+.- + .||-|... .. .-+-.++. .+
T Consensus 141 aW~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~g----f---lwp~Ge~~-~f----~k~a~L~n---~g 205 (403)
T COG3867 141 AWENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGG----F---LWPDGEGR-NF----DKMAALLN---AG 205 (403)
T ss_pred HhhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCc----e---eccCCCCc-Ch----HHHHHHHH---HH
Confidence 5754 233444555666666555 4456777788997642 2 26656532 11 22223443 45
Q ss_pred HHHHHhhhcCCCCCeEEEEe
Q 014785 227 FSVYQRKYKDKQGGNIGLVV 246 (418)
Q Consensus 227 ~~~~r~~~~~~~~~~IG~~~ 246 (418)
++++|+.. |+-+|-+.+
T Consensus 206 ~~avrev~---p~ikv~lHl 222 (403)
T COG3867 206 IRAVREVS---PTIKVALHL 222 (403)
T ss_pred hhhhhhcC---CCceEEEEe
Confidence 56677754 566665543
No 25
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=97.31 E-value=0.015 Score=56.82 Aligned_cols=126 Identities=16% Similarity=0.259 Sum_probs=88.0
Q ss_pred eccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEE-E-eccCCCchhhHhhcCCCCChHhHHHHHHHHHHHHHH
Q 014785 96 FSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV-T-LYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFAS 173 (418)
Q Consensus 96 ~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~-t-L~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~ 173 (418)
=-+-|.-|+|+. | .+| ++.-|.+++-++++||..-- | +.|--.|.|+... -+..+...+...++-..|+.|
T Consensus 65 nemKwe~i~p~~-G-~f~---Fe~AD~ia~FAr~h~m~lhGHtLvW~~q~P~W~~~~--e~~~~~~~~~~e~hI~tV~~r 137 (345)
T COG3693 65 NEMKWEAIEPER-G-RFN---FEAADAIANFARKHNMPLHGHTLVWHSQVPDWLFGD--ELSKEALAKMVEEHIKTVVGR 137 (345)
T ss_pred cccccccccCCC-C-ccC---ccchHHHHHHHHHcCCeeccceeeecccCCchhhcc--ccChHHHHHHHHHHHHHHHHh
Confidence 346799999986 8 999 56688999999999997543 2 3355679998632 366788999999999999999
Q ss_pred hCCcceEEEEccCCccccccCccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEE
Q 014785 174 FGDRVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLV 245 (418)
Q Consensus 174 ~~d~v~~w~t~NEp~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~n~l~Aha~a~~~~r~~~~~~~~~~IG~~ 245 (418)
|++.|..|=+.|||.- ...++-...+..+..+ .+. + -+|.+..|+.. |+++.-+.
T Consensus 138 Ykg~~~sWDVVNE~vd-d~g~~R~s~w~~~~~g---pd~------I----~~aF~~Aread---P~AkL~~N 192 (345)
T COG3693 138 YKGSVASWDVVNEAVD-DQGSLRRSAWYDGGTG---PDY------I----KLAFHIAREAD---PDAKLVIN 192 (345)
T ss_pred ccCceeEEEecccccC-CCchhhhhhhhccCCc---cHH------H----HHHHHHHHhhC---CCceEEee
Confidence 9999999999999976 3323332233332221 121 1 14556667754 68877543
No 26
>PLN03059 beta-galactosidase; Provisional
Probab=97.21 E-value=0.0018 Score=71.02 Aligned_cols=112 Identities=15% Similarity=0.141 Sum_probs=86.2
Q ss_pred Ccccc-----chHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEec--------
Q 014785 73 VDHYH-----RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-------- 139 (418)
Q Consensus 73 ~d~y~-----~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~-------- 139 (418)
.=||- .|++=|+.||++|+|++-.=|.|.-.||.+ | ++|.+|..=..++|+.+.+.|+-+|+-.-
T Consensus 50 ~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~-G-~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~ 127 (840)
T PLN03059 50 SIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPSP-G-NYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWN 127 (840)
T ss_pred CcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccCCCC-C-eeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeec
Confidence 45664 467779999999999999999999999998 9 99999999999999999999999887542
Q ss_pred cCCCchhhHhhcCCC----CChHhHHHHHHHHHHHHHHhC---------CcceEEEEccCC
Q 014785 140 HWDLPLHLHESMGGW----LNKEIVKYFEIYADTCFASFG---------DRVKNWITINEP 187 (418)
Q Consensus 140 h~~~P~~l~~~~gg~----~~~~~~~~f~~ya~~~~~~~~---------d~v~~w~t~NEp 187 (418)
.-.+|.||... .|. .++...++-.+|.+.++...+ +-|-...+=||-
T Consensus 128 ~GGlP~WL~~~-~~i~~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEY 187 (840)
T PLN03059 128 FGGFPVWLKYV-PGIEFRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEY 187 (840)
T ss_pred CCCCchhhhcC-CCcccccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccc
Confidence 35799999754 342 245566666667666666652 335556666773
No 27
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=96.86 E-value=0.0024 Score=64.45 Aligned_cols=106 Identities=17% Similarity=0.330 Sum_probs=79.3
Q ss_pred ccchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEec-c-----------CCC
Q 014785 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-H-----------WDL 143 (418)
Q Consensus 76 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~-h-----------~~~ 143 (418)
+.-.+.+++.||.+|+..+-+.+=|.-+|+.+++ ++| |+.|+++++.+++.|++..+.|. | .-+
T Consensus 15 ~~~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~-~yd---Ws~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpL 90 (402)
T PF01373_consen 15 WNALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQ-QYD---WSGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPL 90 (402)
T ss_dssp CHHHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTT-B------HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeEeeeeccCCCC-ccC---cHHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcC
Confidence 4477899999999999999999999999999768 999 67799999999999999887663 3 368
Q ss_pred chhhHhh-----------cCC--------CCChHhHHHHHHHHHHHHHHhCCcceEEEEccCCc
Q 014785 144 PLHLHES-----------MGG--------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPL 188 (418)
Q Consensus 144 P~~l~~~-----------~gg--------~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~ 188 (418)
|.|+.+. .|. |....+++.+.+|-+-+.++|.+.. -|+-|..
T Consensus 91 P~Wv~~~~~~~di~ytd~~G~rn~E~lSp~~~grt~~~Y~dfm~sF~~~f~~~~---~~I~~I~ 151 (402)
T PF01373_consen 91 PSWVWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRTLQCYSDFMRSFRDNFSDYL---STITEIQ 151 (402)
T ss_dssp -HHHHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBCHHHHHHHHHHHHHHCHHHH---TGEEEEE
T ss_pred CHHHHhccccCCcEEECCCCCcCcceeecccCCchHHHHHHHHHHHHHHHHHHH---hhheEEE
Confidence 9998642 132 4444448999999999999987754 4555544
No 28
>PLN02803 beta-amylase
Probab=96.76 E-value=0.0038 Score=64.72 Aligned_cols=107 Identities=17% Similarity=0.247 Sum_probs=81.7
Q ss_pred cchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccC------------CCc
Q 014785 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW------------DLP 144 (418)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~------------~~P 144 (418)
.-.+..++.+|.+|+..+-+.+=|--+|+++.+ ++| |..|+++++.+++.|++..+.|.-. -+|
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~-~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP 182 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPM-KYN---WEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLP 182 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCC-cCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 346779999999999999999999999998778 999 6669999999999999977776532 499
Q ss_pred hhhHhh--------c---CC----------------CCChHhHHHHHHHHHHHHHHhCCcceEEEEccCCcc
Q 014785 145 LHLHES--------M---GG----------------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (418)
Q Consensus 145 ~~l~~~--------~---gg----------------~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 189 (418)
.|+.+. | -| +..+.-++.+.+|.+-+...|.+... -|+.|..+
T Consensus 183 ~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~--~~I~eI~V 252 (548)
T PLN02803 183 PWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLG--GVIAEIQV 252 (548)
T ss_pred HHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 998752 0 12 12233457788888888888776543 46666654
No 29
>PLN02161 beta-amylase
Probab=96.76 E-value=0.0045 Score=63.79 Aligned_cols=111 Identities=14% Similarity=0.253 Sum_probs=84.8
Q ss_pred CccccchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccC-----------
Q 014785 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW----------- 141 (418)
Q Consensus 73 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~----------- 141 (418)
..+..-.+..++.+|.+|+..+-+.+=|--+|+++.+ ++| |..|+++++.+++.|++..+.|.-.
T Consensus 113 v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~-~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNvGd~~~ 188 (531)
T PLN02161 113 IKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPL-EFK---WSLYEELFRLISEAGLKLHVALCFHSNMHLFGGKGG 188 (531)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCC-cCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccC
Confidence 4566667889999999999999999999999998878 999 6679999999999999977776532
Q ss_pred -CCchhhHhh--------c---CC----------------CCChHhHHHHHHHHHHHHHHhCCcceEEEEccCCcc
Q 014785 142 -DLPLHLHES--------M---GG----------------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (418)
Q Consensus 142 -~~P~~l~~~--------~---gg----------------~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 189 (418)
-+|.|+.+. | .| +..+.-++.+.+|.+-+..+|.+... -|+.|..+
T Consensus 189 IpLP~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~~~--~~I~eI~V 262 (531)
T PLN02161 189 ISLPLWIREIGDVNKDIYYRDKNGFSNNDYLTLGVDQLPLFGGRTAVQCYEDFMLSFSTKFEPYIG--NVIEEISI 262 (531)
T ss_pred ccCCHHHHhhhccCCCceEEcCCCCcccceeeeecccchhcCCCCHHHHHHHHHHHHHHHHHHHhc--CceEEEEe
Confidence 499998752 0 12 12233457888888888888876543 36666554
No 30
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=96.72 E-value=0.0089 Score=58.61 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=63.0
Q ss_pred HHHHHHHHHcCCCeeeecc--ccccc--------cc--cCCC-----CccChhHHHHHHHHHHHHHHcCCeeEEEeccCC
Q 014785 80 KEDIDLIAKLGFDAYRFSI--SWSRI--------FP--DGLG-----TKINMEGITFYNNIIDALLQKGIQPYVTLYHWD 142 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si--~W~ri--------~p--~~~g-----~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~ 142 (418)
+.-++..|+-|||.+|+.+ .|.+. .| ..++ ..+|++=+++.+++|+.|.+.||+|.+.+.| +
T Consensus 33 ~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~w-g 111 (289)
T PF13204_consen 33 EQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNPAYFDHLDRRIEKANELGIEAALVPFW-G 111 (289)
T ss_dssp HHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT----HHHHHHHHHHHHHHTT-EEEEESS--H
T ss_pred HHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEEE-C
Confidence 4447889999999999997 44433 11 1101 1389999999999999999999999877765 2
Q ss_pred CchhhHhhcCCCCC---hHhHHHHHHHHHHHHHHhCCc-ceEEEEccCC
Q 014785 143 LPLHLHESMGGWLN---KEIVKYFEIYADTCFASFGDR-VKNWITINEP 187 (418)
Q Consensus 143 ~P~~l~~~~gg~~~---~~~~~~f~~ya~~~~~~~~d~-v~~w~t~NEp 187 (418)
.|. .+ |.|.. .-..+.-.+|.+.|++||+.. =..|++-||-
T Consensus 112 ~~~---~~-~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~ 156 (289)
T PF13204_consen 112 CPY---VP-GTWGFGPNIMPPENAERYGRYVVARYGAYPNVIWILGGDY 156 (289)
T ss_dssp HHH---H--------TTSS-HHHHHHHHHHHHHHHTT-SSEEEEEESSS
T ss_pred Ccc---cc-ccccccccCCCHHHHHHHHHHHHHHHhcCCCCEEEecCcc
Confidence 222 12 44532 224667778999999999997 4679998885
No 31
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=96.61 E-value=0.0087 Score=58.72 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=62.1
Q ss_pred cccchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCC-
Q 014785 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGG- 153 (418)
Q Consensus 75 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg- 153 (418)
....++.|+.+||+||+|++|++.- |.. .++++.|-+.||-++.-+.....-.|- ..|-
T Consensus 34 ~~~~~~~d~~l~k~~G~N~iR~~h~-----p~~-------------~~~~~~cD~~GilV~~e~~~~~~~~~~--~~~~~ 93 (298)
T PF02836_consen 34 PDEAMERDLELMKEMGFNAIRTHHY-----PPS-------------PRFYDLCDELGILVWQEIPLEGHGSWQ--DFGNC 93 (298)
T ss_dssp -HHHHHHHHHHHHHTT-SEEEETTS-------S-------------HHHHHHHHHHT-EEEEE-S-BSCTSSS--STSCT
T ss_pred CHHHHHHHHHHHHhcCcceEEcccc-----cCc-------------HHHHHHHhhcCCEEEEeccccccCccc--cCCcc
Confidence 3568899999999999999999531 221 256777888999988766432211121 0010
Q ss_pred ---CCChHhHHHHHHHHHHHHHHhCCc--ceEEEEccCC
Q 014785 154 ---WLNKEIVKYFEIYADTCFASFGDR--VKNWITINEP 187 (418)
Q Consensus 154 ---~~~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp 187 (418)
-.+++..+.+.+-++.+++++.++ |-.|.+.||+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~gNE~ 132 (298)
T PF02836_consen 94 NYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLGNES 132 (298)
T ss_dssp SCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEEESS
T ss_pred ccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecCccC
Confidence 135778888888889999999874 8999999998
No 32
>PLN00197 beta-amylase; Provisional
Probab=96.55 E-value=0.0089 Score=62.22 Aligned_cols=106 Identities=16% Similarity=0.237 Sum_probs=81.8
Q ss_pred chHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccC------------CCch
Q 014785 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW------------DLPL 145 (418)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~------------~~P~ 145 (418)
-.+..++.+|.+|+..+-+.+=|--+|+++.+ ++| |..|+++++.+++.|++..+.|.-. -+|.
T Consensus 128 ~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~-~Yd---WsgY~~L~~mvr~~GLKlq~VmSFHqCGGNVGD~~~IpLP~ 203 (573)
T PLN00197 128 AMKASLQALKSAGVEGIMMDVWWGLVERESPG-VYN---WGGYNELLEMAKRHGLKVQAVMSFHQCGGNVGDSCTIPLPK 203 (573)
T ss_pred HHHHHHHHHHHcCCCEEEEeeeeeeeccCCCC-cCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCCH
Confidence 47888999999999999999999999998878 999 6669999999999999987776532 5999
Q ss_pred hhHhh--------c---CCC----------------CChHhHHHHHHHHHHHHHHhCCcceEEEEccCCcc
Q 014785 146 HLHES--------M---GGW----------------LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (418)
Q Consensus 146 ~l~~~--------~---gg~----------------~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 189 (418)
|+.+. | .|- ..+.-++.|.+|.+-+..+|.+... -|+.|..+
T Consensus 204 WV~~~g~~dpDifftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~DFM~SFr~~F~~~l~--~~I~eI~V 272 (573)
T PLN00197 204 WVVEEVDKDPDLAYTDQWGRRNYEYVSLGCDTLPVLKGRTPVQCYADFMRAFRDNFKHLLG--DTIVEIQV 272 (573)
T ss_pred HHHHhhccCCCceeecCCCCcccceeccccccccccCCCCHHHHHHHHHHHHHHHHHHHhc--CceeEEEe
Confidence 98752 0 121 1222367888888888888877544 35666554
No 33
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=96.48 E-value=0.013 Score=59.09 Aligned_cols=100 Identities=19% Similarity=0.305 Sum_probs=54.7
Q ss_pred HcCCCeeeecc---c------------ccccc--ccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhh
Q 014785 88 KLGFDAYRFSI---S------------WSRIF--PDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHES 150 (418)
Q Consensus 88 ~lG~~~~R~si---~------------W~ri~--p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~ 150 (418)
-+|++.+||.| + |.|.+ +..+| .+|+.+=+-=+.++++++++|+.-++ ++-+..|.|+..-
T Consensus 58 GlGLSI~RyNIGgGs~~~~d~~~i~~~~rr~e~f~~~dg-~yDW~~D~gQrwfL~~Ak~rGV~~f~-aFSNSPP~~MT~N 135 (384)
T PF14587_consen 58 GLGLSIWRYNIGGGSAEQGDSSGIRDPWRRAESFLPADG-SYDWDADAGQRWFLKAAKERGVNIFE-AFSNSPPWWMTKN 135 (384)
T ss_dssp S---S-EEEE---STTTTTTSS--SSSTT----SB-TTS--B-TTSSHHHHHHHHHHHHTT---EE-EE-SSS-GGGSSS
T ss_pred CceeeeeeeccccCCcccccCccCCCcccCCccccCCCC-CcCCCCCHHHHHHHHHHHHcCCCeEE-EeecCCCHHHhcC
Confidence 48999999876 2 33322 22235 67765444455689999999999876 5557888887532
Q ss_pred ---cCC-----CCChHhHHHHHHHHHHHHHHhC---CcceEEEEccCCcc
Q 014785 151 ---MGG-----WLNKEIVKYFEIYADTCFASFG---DRVKNWITINEPLQ 189 (418)
Q Consensus 151 ---~gg-----~~~~~~~~~f~~ya~~~~~~~~---d~v~~w~t~NEp~~ 189 (418)
+|+ =+.++..+.|++|-..|+++|. =.+++-.++|||+.
T Consensus 136 G~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~ 185 (384)
T PF14587_consen 136 GSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQW 185 (384)
T ss_dssp SSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS
T ss_pred CCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCC
Confidence 111 1456788999999999999993 36899999999994
No 34
>PLN02801 beta-amylase
Probab=96.45 E-value=0.016 Score=59.95 Aligned_cols=97 Identities=11% Similarity=0.296 Sum_probs=76.8
Q ss_pred cchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEecc------------CCCc
Q 014785 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH------------WDLP 144 (418)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h------------~~~P 144 (418)
.-.+..++.+|.+|+..+-+.+=|--+|+++.+ ++| |..|+++++.+++.|++..+.|.- .-+|
T Consensus 37 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~-~Yd---WsgY~~l~~mvr~~GLKlq~vmSFHqCGGNVGD~~~IpLP 112 (517)
T PLN02801 37 EGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPK-QYD---WSAYRSLFELVQSFGLKIQAIMSFHQCGGNVGDAVNIPIP 112 (517)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCC-ccC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCcccccCC
Confidence 346788999999999999999999999998778 999 666999999999999997776652 2589
Q ss_pred hhhHhh--------c---CC----------------CCChHhHHHHHHHHHHHHHHhCCc
Q 014785 145 LHLHES--------M---GG----------------WLNKEIVKYFEIYADTCFASFGDR 177 (418)
Q Consensus 145 ~~l~~~--------~---gg----------------~~~~~~~~~f~~ya~~~~~~~~d~ 177 (418)
.|+.+. | .| +..+.-++.+.+|.+-+.++|.+.
T Consensus 113 ~WV~~~g~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~ 172 (517)
T PLN02801 113 QWVRDVGDSDPDIFYTNRSGNRNKEYLSIGVDNLPLFHGRTAVEMYSDYMKSFRENMADF 172 (517)
T ss_pred HHHHHhhccCCCceeecCCCCcCcceeeeccCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 998752 0 12 122334688888888888888764
No 35
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=96.34 E-value=0.19 Score=49.40 Aligned_cols=89 Identities=20% Similarity=0.250 Sum_probs=49.8
Q ss_pred chHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCCh
Q 014785 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNK 157 (418)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~ 157 (418)
..+.||.+||+||+|++|+=- |-|+ .| .+.....|.++||=+++.|. .|.---++...|..
T Consensus 54 ~C~rDi~~l~~LgiNtIRVY~----vdp~-----~n------Hd~CM~~~~~aGIYvi~Dl~---~p~~sI~r~~P~~s- 114 (314)
T PF03198_consen 54 ACKRDIPLLKELGINTIRVYS----VDPS-----KN------HDECMSAFADAGIYVILDLN---TPNGSINRSDPAPS- 114 (314)
T ss_dssp HHHHHHHHHHHHT-SEEEES-------TT-----S--------HHHHHHHHHTT-EEEEES----BTTBS--TTS-----
T ss_pred HHHHhHHHHHHcCCCEEEEEE----eCCC-----CC------HHHHHHHHHhCCCEEEEecC---CCCccccCCCCcCC-
Confidence 569999999999999999742 2233 23 77888999999999999995 34211122111110
Q ss_pred HhHHHHHHHHHHHHHHhCC--cceEEEEccC
Q 014785 158 EIVKYFEIYADTCFASFGD--RVKNWITINE 186 (418)
Q Consensus 158 ~~~~~f~~ya~~~~~~~~d--~v~~w~t~NE 186 (418)
=....|.+|... ++.|.. .|--+..=||
T Consensus 115 w~~~l~~~~~~v-id~fa~Y~N~LgFf~GNE 144 (314)
T PF03198_consen 115 WNTDLLDRYFAV-IDAFAKYDNTLGFFAGNE 144 (314)
T ss_dssp --HHHHHHHHHH-HHHHTT-TTEEEEEEEES
T ss_pred CCHHHHHHHHHH-HHHhccCCceEEEEecce
Confidence 023555555554 344433 3555666666
No 36
>PLN02905 beta-amylase
Probab=96.30 E-value=0.017 Score=60.90 Aligned_cols=101 Identities=11% Similarity=0.204 Sum_probs=78.5
Q ss_pred CccccchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccC-----------
Q 014785 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW----------- 141 (418)
Q Consensus 73 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~----------- 141 (418)
..+..-.+..++.||.+|+..+-+.+=|--+|+++.+ +|| |..|+++++.+++.|++..+.|.-.
T Consensus 282 l~~~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~-~Yd---WsgY~~L~~mvr~~GLKlqvVMSFHqCGGNVGD~~~ 357 (702)
T PLN02905 282 LADPDGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQ-EYN---WNGYKRLFQMVRELKLKLQVVMSFHECGGNVGDDVC 357 (702)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCC-cCC---cHHHHHHHHHHHHcCCeEEEEEEecccCCCCCCccc
Confidence 3455667889999999999999999999999998878 999 6669999999999999977776532
Q ss_pred -CCchhhHhh--------c---CCC----------------CChHhHHHHHHHHHHHHHHhCCc
Q 014785 142 -DLPLHLHES--------M---GGW----------------LNKEIVKYFEIYADTCFASFGDR 177 (418)
Q Consensus 142 -~~P~~l~~~--------~---gg~----------------~~~~~~~~f~~ya~~~~~~~~d~ 177 (418)
-+|.|+.+. | .|. ..+.-++.|.+|.+-+...|.+.
T Consensus 358 IPLP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 421 (702)
T PLN02905 358 IPLPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEF 421 (702)
T ss_pred ccCCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 599998752 0 121 12334577888888877777653
No 37
>PLN02705 beta-amylase
Probab=96.21 E-value=0.019 Score=60.44 Aligned_cols=98 Identities=12% Similarity=0.163 Sum_probs=76.3
Q ss_pred ccchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccC------------CC
Q 014785 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW------------DL 143 (418)
Q Consensus 76 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~------------~~ 143 (418)
-.-.+..++.||.+|+..+-+.+=|--+|+++.+ +|| |..|+++++.+++.|++..+.|.-. -+
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~-~Yd---WsgY~~L~~mvr~~GLKlqvVmSFHqCGGNVGD~~~IPL 342 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQ-KYV---WSGYRELFNIIREFKLKLQVVMAFHEYGGNASGNVMISL 342 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCC-cCC---cHHHHHHHHHHHHcCCeEEEEEEeeccCCCCCCcccccC
Confidence 3457788999999999999999999999998778 999 6669999999999999977766522 59
Q ss_pred chhhHhh--------c---CCC----------------CChHhHHHHHHHHHHHHHHhCCc
Q 014785 144 PLHLHES--------M---GGW----------------LNKEIVKYFEIYADTCFASFGDR 177 (418)
Q Consensus 144 P~~l~~~--------~---gg~----------------~~~~~~~~f~~ya~~~~~~~~d~ 177 (418)
|.|+.+. | -|. ..+.-++.|.+|.+-+...|.+.
T Consensus 343 P~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~f 403 (681)
T PLN02705 343 PQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDL 403 (681)
T ss_pred CHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 9998752 0 121 12334578888888877777663
No 38
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.61 E-value=0.092 Score=47.18 Aligned_cols=101 Identities=20% Similarity=0.330 Sum_probs=66.4
Q ss_pred chHHHHHHHHHcCCCeeeecccccccc-----ccC--CCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhh
Q 014785 78 RYKEDIDLIAKLGFDAYRFSISWSRIF-----PDG--LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHES 150 (418)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~-----p~~--~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~ 150 (418)
+|+++++.|+++|++++=+- |+... |.. .+ .+.....+.+..+++++.+.||++++.|+. -|.|...
T Consensus 21 ~W~~~~~~m~~~GidtlIlq--~~~~~~~~~yps~~~~~-~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~~--~~~~w~~- 94 (166)
T PF14488_consen 21 QWREEFRAMKAIGIDTLILQ--WTGYGGFAFYPSKLSPG-GFYMPPVDLLEMILDAADKYGMKVFVGLYF--DPDYWDQ- 94 (166)
T ss_pred HHHHHHHHHHHcCCcEEEEE--EeecCCcccCCccccCc-cccCCcccHHHHHHHHHHHcCCEEEEeCCC--Cchhhhc-
Confidence 69999999999999998433 43332 211 01 222344678999999999999999999974 4556542
Q ss_pred cCCCCCh-HhHHHHHHHHHHHHHHhCCc--ceEEEEccCCc
Q 014785 151 MGGWLNK-EIVKYFEIYADTCFASFGDR--VKNWITINEPL 188 (418)
Q Consensus 151 ~gg~~~~-~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~ 188 (418)
.+. .-++.=..-++.+.++||.+ +.-|-+-.|+.
T Consensus 95 ----~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~~ 131 (166)
T PF14488_consen 95 ----GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEID 131 (166)
T ss_pred ----cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEecccC
Confidence 111 12333345677788888874 55566666654
No 39
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.04 E-value=0.17 Score=53.95 Aligned_cols=95 Identities=16% Similarity=0.212 Sum_probs=77.4
Q ss_pred chHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEe--------ccCCCchhhHh
Q 014785 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL--------YHWDLPLHLHE 149 (418)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL--------~h~~~P~~l~~ 149 (418)
.|++=|+.+|++|+|++-.=+-|.-.+|.+ | ++|.+|.-=..++|..+.++|+-+++-+ .|-.+|.||..
T Consensus 50 ~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~-g-~y~FsG~~DlvkFikl~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~ 127 (649)
T KOG0496|consen 50 MWPDLIKKAKAGGLNVIQTYVFWNLHEPSP-G-KYDFSGRYDLVKFIKLIHKAGLYVILRIGPYICAEWNFGGLPWWLRN 127 (649)
T ss_pred hhHHHHHHHHhcCCceeeeeeecccccCCC-C-cccccchhHHHHHHHHHHHCCeEEEecCCCeEEecccCCCcchhhhh
Confidence 366779999999999999999999999998 8 8999998778888999999998876644 25678999876
Q ss_pred hcCC-C--CChHhHHHHHHHHHHHHHHh
Q 014785 150 SMGG-W--LNKEIVKYFEIYADTCFASF 174 (418)
Q Consensus 150 ~~gg-~--~~~~~~~~f~~ya~~~~~~~ 174 (418)
.-|. + .|+.+..+..+|.+.++...
T Consensus 128 ~pg~~~Rt~nepfk~~~~~~~~~iv~~m 155 (649)
T KOG0496|consen 128 VPGIVFRTDNEPFKAEMERWTTKIVPMM 155 (649)
T ss_pred CCceEEecCChHHHHHHHHHHHHHHHHH
Confidence 5332 1 36778888888888888743
No 40
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=94.19 E-value=0.19 Score=47.85 Aligned_cols=48 Identities=17% Similarity=0.162 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHCCCCCEEEecCCCCCCC-chhHHHHHHHHHHHHHHHh
Q 014785 368 WGLRKVLNYIAKTYNNPPIYVTENGMCINF-SVEVIIIIGLQFQFLNRIN 416 (418)
Q Consensus 368 ~GL~~~L~~i~~rY~~ppI~ITENG~~~~d-~~~~~~~~~~~~~~~~~~~ 416 (418)
.++...|..++++|++| |.|||-|+.... .....-...|+++-+..|.
T Consensus 151 ~~~~~~i~~~~~~~~kP-IWITEf~~~~~~~~~~~~~~~~fl~~~~~~ld 199 (239)
T PF11790_consen 151 DDFKDYIDDLHNRYGKP-IWITEFGCWNGGSQGSDEQQASFLRQALPWLD 199 (239)
T ss_pred HHHHHHHHHHHHHhCCC-EEEEeecccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 46788899999999977 999999975421 1122335566666666554
No 41
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=93.77 E-value=0.27 Score=56.47 Aligned_cols=91 Identities=15% Similarity=0.096 Sum_probs=63.7
Q ss_pred cccchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEec---cCCCchhhHhhc
Q 014785 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY---HWDLPLHLHESM 151 (418)
Q Consensus 75 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~---h~~~P~~l~~~~ 151 (418)
....+++||++||++|+|++|+| ..|.. .++.+.|=+.||-++--.. |.-.|. ..
T Consensus 369 t~e~~~~di~lmK~~g~NaVR~s-----HyP~~-------------p~fydlcDe~GilV~dE~~~e~hg~~~~---~~- 426 (1027)
T PRK09525 369 DEETMVQDILLMKQHNFNAVRCS-----HYPNH-------------PLWYELCDRYGLYVVDEANIETHGMVPM---NR- 426 (1027)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC-------------HHHHHHHHHcCCEEEEecCccccCCccc---cC-
Confidence 45678999999999999999996 23332 1446778889998876542 211111 00
Q ss_pred CCCCChHhHHHHHHHHHHHHHHhCCc--ceEEEEccCCc
Q 014785 152 GGWLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPL 188 (418)
Q Consensus 152 gg~~~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~ 188 (418)
...+++..+.+.+=++.+++|.+.+ |-.|...||+.
T Consensus 427 -~~~dp~~~~~~~~~~~~mV~RdrNHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 427 -LSDDPRWLPAMSERVTRMVQRDRNHPSIIIWSLGNESG 464 (1027)
T ss_pred -CCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEeCccCCC
Confidence 1124666777777788899999885 88999999974
No 42
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=92.88 E-value=0.43 Score=54.78 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=62.9
Q ss_pred cccchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEec---c-CCCchhhHhh
Q 014785 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY---H-WDLPLHLHES 150 (418)
Q Consensus 75 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~---h-~~~P~~l~~~ 150 (418)
....+++||++||++|+|++|+| ..|.. - .+.+.|=+.||-++--.. | |.....+
T Consensus 353 ~~e~~~~dl~lmK~~g~NavR~s-----HyP~~-~------------~fydlcDe~GllV~dE~~~e~~g~~~~~~~--- 411 (1021)
T PRK10340 353 GMDRVEKDIQLMKQHNINSVRTA-----HYPND-P------------RFYELCDIYGLFVMAETDVESHGFANVGDI--- 411 (1021)
T ss_pred CHHHHHHHHHHHHHCCCCEEEec-----CCCCC-H------------HHHHHHHHCCCEEEECCcccccCccccccc---
Confidence 35678999999999999999996 24442 1 456788889998776431 1 1111000
Q ss_pred cCCC--CChHhHHHHHHHHHHHHHHhCCc--ceEEEEccCC
Q 014785 151 MGGW--LNKEIVKYFEIYADTCFASFGDR--VKNWITINEP 187 (418)
Q Consensus 151 ~gg~--~~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp 187 (418)
.+ ..+...+.|.+=++.+++|.+.+ |-.|..-||.
T Consensus 412 --~~~~~~p~~~~~~~~~~~~mV~RdrNHPSIi~WslGNE~ 450 (1021)
T PRK10340 412 --SRITDDPQWEKVYVDRIVRHIHAQKNHPSIIIWSLGNES 450 (1021)
T ss_pred --ccccCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCc
Confidence 01 23455677777788999999885 8899999996
No 43
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=91.65 E-value=0.84 Score=50.87 Aligned_cols=91 Identities=15% Similarity=0.109 Sum_probs=65.2
Q ss_pred CccccchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcC
Q 014785 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMG 152 (418)
Q Consensus 73 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~g 152 (418)
+-.+..+.+|+++||++|+|++|.| -.|.. - .+.+.|-+.||-++=-..+ +- +|
T Consensus 317 ~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~~-~------------~~ydLcDelGllV~~Ea~~-----~~---~~ 370 (808)
T COG3250 317 VTDEDAMERDLKLMKEANMNSVRTS-----HYPNS-E------------EFYDLCDELGLLVIDEAMI-----ET---HG 370 (808)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEec-----CCCCC-H------------HHHHHHHHhCcEEEEecch-----hh---cC
Confidence 4456669999999999999999998 44543 1 4556777889988765432 21 13
Q ss_pred CCCChHhHHHHHHHHHHHHHHhCCc--ceEEEEccCCcc
Q 014785 153 GWLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPLQ 189 (418)
Q Consensus 153 g~~~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~~ 189 (418)
+...++..+....=++.+++|-+++ |-.|..-||.+-
T Consensus 371 ~~~~~~~~k~~~~~i~~mver~knHPSIiiWs~gNE~~~ 409 (808)
T COG3250 371 MPDDPEWRKEVSEEVRRMVERDRNHPSIIIWSLGNESGH 409 (808)
T ss_pred CCCCcchhHHHHHHHHHHHHhccCCCcEEEEeccccccC
Confidence 3344555666667778888888764 889999999663
No 44
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism]
Probab=90.80 E-value=0.42 Score=48.39 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=73.4
Q ss_pred HHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCC--ChHhHHH
Q 014785 85 LIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWL--NKEIVKY 162 (418)
Q Consensus 85 l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~--~~~~~~~ 162 (418)
.-+|+|++-+|.---|.-++... -++ +.++++++|.+...|+.-+.+-.||+.+.-....+.+=. .....+.
T Consensus 13 ~~~Ei~v~yi~~~~v~h~~~q~~---~~~---~t~~d~i~d~~~~~~~~~ie~~l~~~~l~~~~~~wq~n~~~~~~~~dl 86 (428)
T COG3664 13 TDDEIQVNYIRRHGVWHVNAQKL---FYP---FTYIDEIIDTLLDLGLDLIELFLIWNNLNTKEHQWQLNVDDPKSVFDL 86 (428)
T ss_pred hhhhhceeeehhcceeeeeeccc---cCC---hHHHHHHHHHHHHhccHHHHHhhcccchhhhhhhcccccCCcHhHHHH
Confidence 34688999999888888333322 466 789999999999999555555667777765443232221 2347899
Q ss_pred HHHHHHHHHHHhCCc---ceEEEEccCCccccc
Q 014785 163 FEIYADTCFASFGDR---VKNWITINEPLQTAV 192 (418)
Q Consensus 163 f~~ya~~~~~~~~d~---v~~w~t~NEp~~~~~ 192 (418)
++.+++.|+.+||-+ .-....+||||..+.
T Consensus 87 ~~~fl~h~~~~vg~e~v~kw~f~~~~~pn~~ad 119 (428)
T COG3664 87 IAAFLKHVIRRVGVEFVRKWPFYSPNEPNLLAD 119 (428)
T ss_pred HHHHHHHHHHHhChhheeecceeecCCCCcccc
Confidence 999999999999963 445679999998743
No 45
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=90.21 E-value=0.14 Score=52.68 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=78.8
Q ss_pred hHHHHHHHHHcCCCeeeecccc-ccccccCCCCccChhH-HHHHHHHHHHHHHcCCeeEEEec----cCCCchhhHhhcC
Q 014785 79 YKEDIDLIAKLGFDAYRFSISW-SRIFPDGLGTKINMEG-ITFYNNIIDALLQKGIQPYVTLY----HWDLPLHLHESMG 152 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W-~ri~p~~~g~~~n~~~-~~~y~~~i~~l~~~gi~p~~tL~----h~~~P~~l~~~~g 152 (418)
.+.|++.++.+|++..|++|-= ..+ -+..| ..|.+. +.+.+.+++.+...+|+.++||. |+.--.|...=.|
T Consensus 28 i~~dle~a~~vg~k~lR~fiLDgEdc-~d~~G-~~na~s~~~y~~~fla~a~~l~lkvlitlivg~~hmgg~Nw~Ipwag 105 (587)
T COG3934 28 IKADLEPAGFVGVKDLRLFILDGEDC-RDKEG-YRNAGSNVWYAAWFLAPAGYLDLKVLITLIVGLKHMGGTNWRIPWAG 105 (587)
T ss_pred hhcccccccCccceeEEEEEecCcch-hhhhc-eecccccHHHHHHHhhhcccCcceEEEEEeecccccCcceeEeecCC
Confidence 3578999999999999999532 222 22236 666666 89999999999999999999986 3222222110001
Q ss_pred ------CCCChHhHHHHHHHHHHHHHHhCCc--ceEEEEccCCcc
Q 014785 153 ------GWLNKEIVKYFEIYADTCFASFGDR--VKNWITINEPLQ 189 (418)
Q Consensus 153 ------g~~~~~~~~~f~~ya~~~~~~~~d~--v~~w~t~NEp~~ 189 (418)
-...++...-|.+|++.+++.|+.. +--|+.-|||.+
T Consensus 106 ~~~pdn~iyD~k~~~~~kkyvedlVk~yk~~ptI~gw~l~Ne~lv 150 (587)
T COG3934 106 EQSPDNVIYDPKFRGPGKKYVEDLVKPYKLDPTIAGWALRNEPLV 150 (587)
T ss_pred CCCccccccchhhcccHHHHHHHHhhhhccChHHHHHHhcCCccc
Confidence 1345677888999999999988764 678999999776
No 46
>smart00642 Aamy Alpha-amylase domain.
Probab=86.92 E-value=2.2 Score=38.22 Aligned_cols=66 Identities=18% Similarity=0.273 Sum_probs=44.8
Q ss_pred ccccchHHHHHHHHHcCCCeeeeccccccccc--cCCC------CccCh--hHHHHHHHHHHHHHHcCCeeEEEec
Q 014785 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFP--DGLG------TKINM--EGITFYNNIIDALLQKGIQPYVTLY 139 (418)
Q Consensus 74 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p--~~~g------~~~n~--~~~~~y~~~i~~l~~~gi~p~~tL~ 139 (418)
..+....+-++.+++||++++-++=-+..... ...| ..+++ -..+-++++|++|+++||++|+.+-
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 34566677788999999999988754433321 1001 01221 1246689999999999999999873
No 47
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=86.75 E-value=5.7 Score=38.97 Aligned_cols=87 Identities=22% Similarity=0.481 Sum_probs=62.8
Q ss_pred ccchHHHHHHHHHcCCCeeeec-c--ccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcC
Q 014785 76 YHRYKEDIDLIAKLGFDAYRFS-I--SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMG 152 (418)
Q Consensus 76 y~~~~eDi~l~~~lG~~~~R~s-i--~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~g 152 (418)
..||.+--+++++.|+|+.-+. + .- +++ ..+-++.+.++-+.++..||++.+++. |..|.-+ |
T Consensus 56 ~~R~~~YARllASiGINgvvlNNVNa~~-~~L--------t~~~l~~v~~lAdvfRpYGIkv~LSvn-FasP~~l----g 121 (328)
T PF07488_consen 56 LTRYRDYARLLASIGINGVVLNNVNANP-KLL--------TPEYLDKVARLADVFRPYGIKVYLSVN-FASPIEL----G 121 (328)
T ss_dssp -HHHHHHHHHHHHTT--EEE-S-SS--C-GGG--------STTTHHHHHHHHHHHHHTT-EEEEEE--TTHHHHT----T
T ss_pred hhHHHHHHHHHhhcCCceEEecccccCh-hhc--------CHHHHHHHHHHHHHHhhcCCEEEEEee-ccCCccc----C
Confidence 4588888999999999998765 2 22 222 222277788999999999999999997 7888754 5
Q ss_pred CC-----CChHhHHHHHHHHHHHHHHhCC
Q 014785 153 GW-----LNKEIVKYFEIYADTCFASFGD 176 (418)
Q Consensus 153 g~-----~~~~~~~~f~~ya~~~~~~~~d 176 (418)
|- ++++++.++.+=++.+.++..|
T Consensus 122 gL~TaDPld~~V~~WW~~k~~eIY~~IPD 150 (328)
T PF07488_consen 122 GLPTADPLDPEVRQWWKDKADEIYSAIPD 150 (328)
T ss_dssp S-S---TTSHHHHHHHHHHHHHHHHH-TT
T ss_pred CcCcCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 53 5789999999999999999866
No 48
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases.; PDB: 3IK2_A 3ZQ9_A 2YJQ_B 2YKK_A 2YIH_A 2EEX_A 2EQD_A 2E0P_A 2E4T_A 2EO7_A ....
Probab=85.99 E-value=2 Score=40.80 Aligned_cols=118 Identities=16% Similarity=0.091 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHcCCeeEEEeccC--------------CCchhhHhh----------------cCC----CCChH----
Q 014785 117 ITFYNNIIDALLQKGIQPYVTLYHW--------------DLPLHLHES----------------MGG----WLNKE---- 158 (418)
Q Consensus 117 ~~~y~~~i~~l~~~gi~p~~tL~h~--------------~~P~~l~~~----------------~gg----~~~~~---- 158 (418)
.+.++.+|+.-+++|..+|+||.=- ..|.|-..+ .+| -.+|+
T Consensus 23 g~~~~~f~~~~~~~ga~~m~T~pm~G~Vakd~~~~~~~~~fp~~~y~~Q~~~d~~~~~~Gng~~~~~~~~~~~~P~~~~~ 102 (239)
T PF12891_consen 23 GDVADTFIDQNLAAGAYSMMTLPMIGYVAKDANSVSESESFPSWRYGPQQWFDPWNPDCGNGVKPDKTALTSNDPDTPDN 102 (239)
T ss_dssp THHHHHHHHHHHHTT-EEEEEE--SSEEES-BSEGBGGGTSSSTTEEEBS-EETTEEEEE-SEESTSSS--SSSGGSSSS
T ss_pred HHHHHHHHHHhhhcCcceeEeecccceEecCCCCcccccCCChhhcccccccCcCcCCCCccccCCCCCCCCCCCCCCcc
Confidence 3779999999999999999998521 112211000 011 12343
Q ss_pred --hHHHHHHHHHHHHHHhCCc-----ceEEEEccCCccccccCccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 014785 159 --IVKYFEIYADTCFASFGDR-----VKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQ 231 (418)
Q Consensus 159 --~~~~f~~ya~~~~~~~~d~-----v~~w~t~NEp~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~n~l~Aha~a~~~~r 231 (418)
.++ +++..+..+||.. |++|..=|||.+.. +.++-- +.....+.-+....++.|+|+|.
T Consensus 103 ~~y~~---ewV~~l~~~~g~a~~~~gvk~y~lDNEP~LW~------~TH~dV---HP~~~t~~El~~r~i~~AkaiK~-- 168 (239)
T PF12891_consen 103 PVYMD---EWVNYLVNKYGNASTNGGVKYYSLDNEPDLWH------STHRDV---HPEPVTYDELRDRSIEYAKAIKA-- 168 (239)
T ss_dssp EEEHH---HHHHHHHHHH--TTSTTS--EEEESS-GGGHH------HHTTTT-----S---HHHHHHHHHHHHHHHHH--
T ss_pred HhHHH---HHHHHHHHHHhccccCCCceEEEecCchHhhc------cccccc---CCCCCCHHHHHHHHHHHHHHHHh--
Confidence 344 4566777777765 99999999999753 222111 11122244455666777776654
Q ss_pred hhhcCCCCCeE-EEEecCcccc
Q 014785 232 RKYKDKQGGNI-GLVVDCEWAE 252 (418)
Q Consensus 232 ~~~~~~~~~~I-G~~~~~~~~~ 252 (418)
.. |+++| |.+.-.-+.|
T Consensus 169 -~D---P~a~v~GP~~wgw~~y 186 (239)
T PF12891_consen 169 -AD---PDAKVFGPVEWGWCGY 186 (239)
T ss_dssp -H----TTSEEEEEEE-SHHHH
T ss_pred -hC---CCCeEeechhhcccee
Confidence 44 67765 7775444444
No 49
>KOG2233 consensus Alpha-N-acetylglucosaminidase [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.86 E-value=5.4 Score=41.42 Aligned_cols=136 Identities=18% Similarity=0.320 Sum_probs=83.2
Q ss_pred ccchHHHHHHHHHcCCCeeeec----cccccccccCCC----------------------------CccChh----HHHH
Q 014785 76 YHRYKEDIDLIAKLGFDAYRFS----ISWSRIFPDGLG----------------------------TKINME----GITF 119 (418)
Q Consensus 76 y~~~~eDi~l~~~lG~~~~R~s----i~W~ri~p~~~g----------------------------~~~n~~----~~~~ 119 (418)
|.+|+..|+-|+-.|+|..=.. +-|-+|+-.- | ....++ -+-.
T Consensus 77 w~qWeR~iDWmALnGinl~la~~gQEaIWqkVf~~l-gl~~eeldeyftgpAflAW~RMGNl~awgGpLs~aw~~~ql~L 155 (666)
T KOG2233|consen 77 WEQWEREIDWMALNGINLVLAPLGQEAIWQKVFMGL-GLQREELDEYFTGPAFLAWHRMGNLHAWGGPLSPAWMLNQLLL 155 (666)
T ss_pred hHHHHhHhhHHHHcCcceeeccchhHHHHHHHHHHc-CCCHHHHHHhcccHHHHHHHHhcCccccCCCCCHHHHHHHHHH
Confidence 5789999999999999965422 2355544321 1 022211 1233
Q ss_pred HHHHHHHHHHcCCeeEEEeccCCCchhhHhhc--------CCCC---------------ChHhHHHHHHHHHHHHHHhCC
Q 014785 120 YNNIIDALLQKGIQPYVTLYHWDLPLHLHESM--------GGWL---------------NKEIVKYFEIYADTCFASFGD 176 (418)
Q Consensus 120 y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~--------gg~~---------------~~~~~~~f~~ya~~~~~~~~d 176 (418)
=+++|+.+++-||+|++--+--..|..|..-+ +.|. .|-+.+-=..|.+...+.||.
T Consensus 156 qkrIidrm~~lGmTpvLPaFaG~VP~al~rlfPesnf~rl~rWn~f~s~~~C~l~v~P~dplF~eIgs~Flr~~~kefG~ 235 (666)
T KOG2233|consen 156 QKRIIDRMLELGMTPVLPAFAGHVPDALERLFPESNFTRLPRWNNFTSRYSCMLLVSPFDPLFQEIGSTFLRHQIKEFGG 235 (666)
T ss_pred HHHHHHHHHHcCCCccchhhccccHHHHHHhCchhceeeccccCCCCcceeeeEEccCCcchHHHHHHHHHHHHHHHhCC
Confidence 46899999999999999888777888876432 2232 223445555677778899996
Q ss_pred cceEEE--EccCCccccccCccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhhh
Q 014785 177 RVKNWI--TINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQRKY 234 (418)
Q Consensus 177 ~v~~w~--t~NEp~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~n~l~Aha~a~~~~r~~~ 234 (418)
--..+. ||||. -||-. ..+ .+--+.+..|+.+++.+
T Consensus 236 ~tniy~~DpFNE~------------~Pp~s----epe------y~~staaAiyesm~kvd 273 (666)
T KOG2233|consen 236 VTNIYSADPFNEI------------LPPES----EPE------YVKSTAAAIYESMKKVD 273 (666)
T ss_pred cccccccCccccc------------CCCCC----ChH------HHHHHHHHHHHHHhccC
Confidence 322222 88883 35532 111 12234456778888865
No 50
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=79.24 E-value=9.2 Score=37.88 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=65.8
Q ss_pred cchHHHHHHHHHcCCCeeeecccc-------ccccccC---CCCccChhHHHHHHHHHHHHHHcCCeeEEEe-cc-----
Q 014785 77 HRYKEDIDLIAKLGFDAYRFSISW-------SRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQPYVTL-YH----- 140 (418)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W-------~ri~p~~---~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL-~h----- 140 (418)
...++-++.|+++|+|++=+.+.+ |.++|.. +|......|++.+..+|++++++||++..-+ ..
T Consensus 19 ~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~ 98 (311)
T PF02638_consen 19 EQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPD 98 (311)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCc
Confidence 346777999999999987655433 3344421 1211122368889999999999999988654 11
Q ss_pred -----CCCchhhHhh-------c----CC--CC---ChHhHHHHHHHHHHHHHHhC
Q 014785 141 -----WDLPLHLHES-------M----GG--WL---NKEIVKYFEIYADTCFASFG 175 (418)
Q Consensus 141 -----~~~P~~l~~~-------~----gg--~~---~~~~~~~f~~ya~~~~~~~~ 175 (418)
-..|.|+... + |+ |. +|++.+...+-++.++++|.
T Consensus 99 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd 154 (311)
T PF02638_consen 99 VSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD 154 (311)
T ss_pred hhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC
Confidence 1246664311 1 22 54 47899999999999999994
No 51
>PLN02361 alpha-amylase
Probab=77.61 E-value=5.6 Score=40.89 Aligned_cols=65 Identities=14% Similarity=0.279 Sum_probs=46.1
Q ss_pred ccccchHHHHHHHHHcCCCeeeeccccccccccCCC----CccChh--HHHHHHHHHHHHHHcCCeeEEEe
Q 014785 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG----TKINME--GITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 74 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g----~~~n~~--~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
.+|....+-++-|++||++++=++=.....-+.|-. ..+|.. ..+-++++|++|+++||++|+.+
T Consensus 26 ~~w~~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 26 DWWRNLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 488999999999999999999887544333232210 011111 23558999999999999999975
No 52
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=76.95 E-value=6 Score=31.28 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=13.9
Q ss_pred HHHHhCC--cceEEEEccC-Cc
Q 014785 170 CFASFGD--RVKNWITINE-PL 188 (418)
Q Consensus 170 ~~~~~~d--~v~~w~t~NE-p~ 188 (418)
++++||+ +|.+|..+|| |+
T Consensus 1 iv~~~~~~~~Il~Wdl~NE~p~ 22 (88)
T PF12876_consen 1 IVTRFGYDPRILAWDLWNEPPN 22 (88)
T ss_dssp -HHHTT-GGGEEEEESSTTTT-
T ss_pred CchhhcCCCCEEEEEeecCCCC
Confidence 4577776 6999999999 76
No 53
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=76.73 E-value=5.6 Score=37.09 Aligned_cols=72 Identities=21% Similarity=0.446 Sum_probs=50.1
Q ss_pred cchHHHHHHHHHcCCCeeee----------------------ccccccccccCCCCccChhHHHHHHHHHHHHHHcCCee
Q 014785 77 HRYKEDIDLIAKLGFDAYRF----------------------SISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQP 134 (418)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~----------------------si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p 134 (418)
-.-+.-|+||++||.+++.| ++ | +||+| | ++ ++.+..++..|++.|++-
T Consensus 135 V~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~-~--lEPTG-G--Id---l~Nf~~I~~i~ldaGv~k 205 (236)
T TIGR03581 135 VPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGF-Y--LEPTG-G--ID---LDNFEEIVQIALDAGVEK 205 (236)
T ss_pred eeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCC-c--cCCCC-C--cc---HHhHHHHHHHHHHcCCCe
Confidence 34567799999999999875 33 3 68887 5 88 888999999999999987
Q ss_pred EEEecc-CCCchhhHhhcCCCCChHhHHH
Q 014785 135 YVTLYH-WDLPLHLHESMGGWLNKEIVKY 162 (418)
Q Consensus 135 ~~tL~h-~~~P~~l~~~~gg~~~~~~~~~ 162 (418)
++- | |.. +-|+--|-+.++-+..
T Consensus 206 viP--HIYss---iIDk~tG~TrpedV~~ 229 (236)
T TIGR03581 206 VIP--HVYSS---IIDKETGNTRVEDVKQ 229 (236)
T ss_pred ecc--cccee---ccccccCCCCHHHHHH
Confidence 642 2 111 1233356666654443
No 54
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=74.49 E-value=96 Score=30.89 Aligned_cols=145 Identities=14% Similarity=0.100 Sum_probs=80.3
Q ss_pred ccccc---cCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCC---chh---------hHhhc---CCC------CC
Q 014785 101 SRIFP---DGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLH---------LHESM---GGW------LN 156 (418)
Q Consensus 101 ~ri~p---~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~---P~~---------l~~~~---gg~------~~ 156 (418)
++..| ...+ -++.+-+..++++.+.++++|-+.++=|+|-.- +.+ ..... ..+ +.
T Consensus 63 ~~~~~~~~~~~~-~~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~ 141 (338)
T cd04733 63 HLEEPGIIGNVV-LESGEDLEAFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTE 141 (338)
T ss_pred cccCCCcCCCcc-cCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCH
Confidence 45555 3235 678889999999999999999999999999321 110 00000 001 11
Q ss_pred ---hHhHHHHHHHHHHHHHHhC-CcceEEEEccCCccccccCccccccC-CCCCCC-CCChHHHHHHHHHHHHHHHHHHH
Q 014785 157 ---KEIVKYFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIFA-PGRHQH-SSTEPYLVAHHQILAHAAAFSVY 230 (418)
Q Consensus 157 ---~~~~~~f~~ya~~~~~~~~-d~v~~w~t~NEp~~~~~~gy~~g~~~-P~~~~~-~~~~~~~~~~n~l~Aha~a~~~~ 230 (418)
.++++.|++=|+.+ ++.| |-|. +.+-.||+...|. |..... +.-- -.+-|-+.--...++.+
T Consensus 142 ~eI~~~i~~~~~aA~ra-~~aGfDgVe---------ih~a~gyLl~qFlsp~~N~R~D~yG--GslenR~rf~~EiI~aI 209 (338)
T cd04733 142 EEIEDVIDRFAHAARLA-QEAGFDGVQ---------IHAAHGYLLSQFLSPLTNKRTDEYG--GSLENRARLLLEIYDAI 209 (338)
T ss_pred HHHHHHHHHHHHHHHHH-HHcCCCEEE---------EchhhhhHHHHhcCCcCCCCCccCC--CCHHHHHHHHHHHHHHH
Confidence 23677777766654 4444 3332 3356678876653 432100 1100 11234444344666777
Q ss_pred HhhhcCCCCCeEEEEecCcccccCCCCHHH
Q 014785 231 QRKYKDKQGGNIGLVVDCEWAEANSDKIED 260 (418)
Q Consensus 231 r~~~~~~~~~~IG~~~~~~~~~P~~~~p~d 260 (418)
|+.. .++-.|++-++...+.+..-++++
T Consensus 210 R~av--G~d~~v~vris~~~~~~~g~~~ee 237 (338)
T cd04733 210 RAAV--GPGFPVGIKLNSADFQRGGFTEED 237 (338)
T ss_pred HHHc--CCCCeEEEEEcHHHcCCCCCCHHH
Confidence 7653 245678988876544443334544
No 55
>PF05089 NAGLU: Alpha-N-acetylglucosaminidase (NAGLU) tim-barrel domain; InterPro: IPR024733 Alpha-N-acetylglucosaminidase is a lysosomal enzyme that is required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase gene can lead to mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B), characterised by neurological dysfunction but relatively mild somatic manifestations []. Alpha-N-acetylglucosaminidase is composed of three domains. This entry represents the central domain, which has a tim barrel fold [].; PDB: 4A4A_A 2VC9_A 2VCC_A 2VCB_A 2VCA_A.
Probab=74.31 E-value=26 Score=35.04 Aligned_cols=109 Identities=19% Similarity=0.410 Sum_probs=58.5
Q ss_pred ccchHHHHHHHHHcCCCeeeecc----ccccccccC---------------------------C-C---CccChhHHHHH
Q 014785 76 YHRYKEDIDLIAKLGFDAYRFSI----SWSRIFPDG---------------------------L-G---TKINMEGITFY 120 (418)
Q Consensus 76 y~~~~eDi~l~~~lG~~~~R~si----~W~ri~p~~---------------------------~-g---~~~n~~~~~~y 120 (418)
|+||++.|+.|+--|+|..=--+ -|-|++-+= - | ..+-++-.+.=
T Consensus 18 W~rWEreIDWMALnGiNl~La~~GqEavw~~v~~~~G~t~~ei~~ff~GPA~laW~rMgNl~gwgGPLp~~w~~~q~~Lq 97 (333)
T PF05089_consen 18 WERWEREIDWMALNGINLPLAIVGQEAVWQRVLRELGLTDEEIREFFTGPAFLAWWRMGNLQGWGGPLPQSWIDQQAELQ 97 (333)
T ss_dssp HHHHHHHHHHHHHTT--EEE--TTHHHHHHHHHGGGT--HHHHHHHS--TT-HHHHHTTS--STT----TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhhhhHHHHHHHHHHHHcCCCHHHHHHHcCCHHHHHHHHhCCcccCCCCCCHHHHHHHHHHH
Confidence 67899999999999999542111 133332221 0 1 01112234556
Q ss_pred HHHHHHHHHcCCeeEEEeccCCCchhhHhhc--------CCC--------CChHhHHHHHHHHHHHH----HHhCCcceE
Q 014785 121 NNIIDALLQKGIQPYVTLYHWDLPLHLHESM--------GGW--------LNKEIVKYFEIYADTCF----ASFGDRVKN 180 (418)
Q Consensus 121 ~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~--------gg~--------~~~~~~~~f~~ya~~~~----~~~~d~v~~ 180 (418)
+++++.+++-||+|++--+---.|..|.+++ |.| +.| .-+.|++.++... +.|| .-.+
T Consensus 98 ~kIl~RmreLGm~PVLPaF~G~VP~~~~~~~P~a~i~~~~~W~~f~~~~~L~P-~dplF~~i~~~F~~~q~~~yG-~~~~ 175 (333)
T PF05089_consen 98 KKILDRMRELGMTPVLPAFAGHVPRAFKRKYPNANITRQGNWNGFCRPYFLDP-TDPLFAEIAKLFYEEQIKLYG-TDHI 175 (333)
T ss_dssp HHHHHHHHHHT-EEEEE--S-EE-TTHHHHSTT--EE---EETTEE--EEE-S-S--HHHHHHHHHHHHHHHHH----SE
T ss_pred HHHHHHHHHcCCcccCCCcCCCCChHHHhcCCCCEEeeCCCcCCCCCCceeCC-CCchHHHHHHHHHHHHHHhcC-CCce
Confidence 7999999999999999888767888887765 222 222 2356666665554 6688 4445
Q ss_pred EE--EccC
Q 014785 181 WI--TINE 186 (418)
Q Consensus 181 w~--t~NE 186 (418)
+. +|||
T Consensus 176 Y~~D~FnE 183 (333)
T PF05089_consen 176 YAADPFNE 183 (333)
T ss_dssp EE--TTTT
T ss_pred eCCCccCC
Confidence 54 7888
No 56
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=73.65 E-value=1e+02 Score=30.71 Aligned_cols=39 Identities=33% Similarity=0.405 Sum_probs=32.3
Q ss_pred cccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccC
Q 014785 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW 141 (418)
Q Consensus 102 ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~ 141 (418)
+..|...+ -++.+-+..++++.+.++++|-+.++=|+|.
T Consensus 62 ~~~~~~~~-~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H~ 100 (336)
T cd02932 62 RITPGDLG-LWNDEQIEALKRIVDFIHSQGAKIGIQLAHA 100 (336)
T ss_pred CCCCCcee-ecCHHHHHHHHHHHHHHHhcCCcEEEEccCC
Confidence 44444335 6788889999999999999999999999994
No 57
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=73.13 E-value=15 Score=31.67 Aligned_cols=58 Identities=10% Similarity=0.257 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCCeeeeccc----cccccccCCCC-ccChhHHHHHHHHHHHHHHcCCeeEEEecc
Q 014785 81 EDIDLIAKLGFDAYRFSIS----WSRIFPDGLGT-KINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (418)
Q Consensus 81 eDi~l~~~lG~~~~R~si~----W~ri~p~~~g~-~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h 140 (418)
+=++.+|++|+|++-+... |+ -.|+..|. .+..+ -+.+.++|++|+++||++++-+..
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~a-yYPt~~~~~hp~L~-~Dllge~v~a~h~~Girv~ay~~~ 66 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYA-YYPTKVGPRHPGLK-RDLLGEQVEACHERGIRVPAYFDF 66 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEE-EccCCCCcCCCCCC-cCHHHHHHHHHHHCCCEEEEEEee
Confidence 3478999999999999332 21 13333220 23333 588999999999999999986653
No 58
>PLN00196 alpha-amylase; Provisional
Probab=72.84 E-value=7.2 Score=40.46 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=44.9
Q ss_pred cccchHHHHHHHHHcCCCeeeeccccccccccCCC----CccCh---hHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG----TKINM---EGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 75 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g----~~~n~---~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
+|....+.++-+++||++++=++=......+.|-. ..+|. -.-+=++++|++|+++||++|+.+
T Consensus 42 ~~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 42 WYNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 57778899999999999999988544333222210 01221 113458999999999999999974
No 59
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=71.67 E-value=7.2 Score=37.33 Aligned_cols=59 Identities=20% Similarity=0.449 Sum_probs=40.2
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccC-CCC------ccC--hhHHHHHHHHHHHHHHcCCeeEEEec
Q 014785 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGT------KIN--MEGITFYNNIIDALLQKGIQPYVTLY 139 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~-~g~------~~n--~~~~~~y~~~i~~l~~~gi~p~~tL~ 139 (418)
..+-|+.+|+||++++-++=-+. .|.. .|. .+| .-..+=++++|++|+++||++|+.+-
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~--~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V 73 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFE--SPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVV 73 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EE--SSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHhhHHHHHcCCCceecccccc--cccccccccceeeeccccccchhhhhhhhhhccccccceEEEeee
Confidence 34568999999999999884333 1111 010 111 12356789999999999999999874
No 60
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=70.96 E-value=8.6 Score=42.29 Aligned_cols=57 Identities=23% Similarity=0.345 Sum_probs=40.4
Q ss_pred HHHHHHcCCCeeee----ccccccccccC-C----C------------CccCh---hHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 83 IDLIAKLGFDAYRF----SISWSRIFPDG-L----G------------TKINM---EGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 83 i~l~~~lG~~~~R~----si~W~ri~p~~-~----g------------~~~n~---~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
|+-+|+||++++.+ ++.+.+...+. . | ...+. ..+.-+++||++|+++||++|+.+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 99999999999994 34444444321 0 1 11222 257789999999999999999975
Q ss_pred c
Q 014785 139 Y 139 (418)
Q Consensus 139 ~ 139 (418)
-
T Consensus 286 V 286 (697)
T COG1523 286 V 286 (697)
T ss_pred e
Confidence 3
No 61
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=67.65 E-value=33 Score=33.75 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=73.4
Q ss_pred hHHHHHHHHHcCC--CeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCC---chhhH-----
Q 014785 79 YKEDIDLIAKLGF--DAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLHLH----- 148 (418)
Q Consensus 79 ~~eDi~l~~~lG~--~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~---P~~l~----- 148 (418)
..+-++.+++.|+ +++=+.+.|..-. +.= ++|++-+---..+|+.|++.|+++++.+.=+-. +..-+
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~--g~f-~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g 108 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY--GDF-DFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKG 108 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC--Ccc-ccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCC
Confidence 4556788889995 5777777786432 212 566666666789999999999999887653211 21111
Q ss_pred ----hhcC----------C------CCChHhHHHHHHHHHHHHHHhCCcceEEEEccCCc
Q 014785 149 ----ESMG----------G------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPL 188 (418)
Q Consensus 149 ----~~~g----------g------~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~ 188 (418)
+..| | ++||++.+.|.+..+.+....|=. -+|+=+|||.
T Consensus 109 ~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvd-g~w~D~~E~~ 167 (303)
T cd06592 109 YLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGID-SFKFDAGEAS 167 (303)
T ss_pred eEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCc-EEEeCCCCcc
Confidence 1001 1 679999999999999988777643 4788899997
No 62
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=67.21 E-value=11 Score=38.18 Aligned_cols=94 Identities=12% Similarity=0.150 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccC---CCCccChhHHHHHHHHHHHHHHcCCeeE-EEeccCCCchhhHhhcCCCC
Q 014785 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWL 155 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~p~~---~g~~~n~~~~~~y~~~i~~l~~~gi~p~-~tL~h~~~P~~l~~~~gg~~ 155 (418)
++.++.|+++|++.+-+++ ..+-++- -|...+ .+-+.+.|+.+++.|+..+ +.|. +++|. .
T Consensus 99 ~e~l~~l~~~G~~rvsiGv--qS~~d~~L~~l~R~~~---~~~~~~ai~~l~~~g~~~v~~dli-~GlPg---------q 163 (374)
T PRK05799 99 EEKLKILKSMGVNRLSIGL--QAWQNSLLKYLGRIHT---FEEFLENYKLARKLGFNNINVDLM-FGLPN---------Q 163 (374)
T ss_pred HHHHHHHHHcCCCEEEEEC--ccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCcEEEEee-cCCCC---------C
Confidence 5789999999999555554 3333321 131123 5667789999999999744 4443 55664 2
Q ss_pred ChHhHHHHHHHHHHHHHHhCCcceEEEEccCCcccc
Q 014785 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTA 191 (418)
Q Consensus 156 ~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~ 191 (418)
+ .+.|.+-.+.+.+.=-++|..+...-+|+...
T Consensus 164 t---~e~~~~~l~~~~~l~~~~is~y~l~~~pgT~l 196 (374)
T PRK05799 164 T---LEDWKETLEKVVELNPEHISCYSLIIEEGTPF 196 (374)
T ss_pred C---HHHHHHHHHHHHhcCCCEEEEeccEecCCCHH
Confidence 2 34455555554433235666665555777543
No 63
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=66.93 E-value=30 Score=34.20 Aligned_cols=108 Identities=16% Similarity=0.182 Sum_probs=68.8
Q ss_pred HHHHHHHHHcCCC-eeeeccc-c-ccccc-c-CCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCC
Q 014785 80 KEDIDLIAKLGFD-AYRFSIS-W-SRIFP-D-GLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGW 154 (418)
Q Consensus 80 ~eDi~l~~~lG~~-~~R~si~-W-~ri~p-~-~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~ 154 (418)
++.+++|+++|++ .+=++++ - .++.- . +.| .+ .+-+.+.++.++++||.+.+.+. +.+|. .
T Consensus 117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg--~t---~~~~~~ai~~~~~~Gi~v~~~~i-~G~P~--------~ 182 (313)
T TIGR01210 117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKG--ST---FEDFIRAAELARKYGAGVKAYLL-FKPPF--------L 182 (313)
T ss_pred HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCC--CC---HHHHHHHHHHHHHcCCcEEEEEE-ecCCC--------C
Confidence 6889999999998 4666652 1 12221 1 112 33 55688999999999999776664 34552 1
Q ss_pred CChHhHHHHHHHHHHHHHHhCCcceEEEEccCCccccccCccccccCC
Q 014785 155 LNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFAP 202 (418)
Q Consensus 155 ~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~~P 202 (418)
...++++.+.+.++.+.. +++.|....+.=+|+.....-|..|.|.|
T Consensus 183 se~ea~ed~~~ti~~~~~-l~~~vs~~~l~v~~gT~l~~~~~~G~~~p 229 (313)
T TIGR01210 183 SEKEAIADMISSIRKCIP-VTDTVSINPTNVQKGTLVEFLWNRGLYRP 229 (313)
T ss_pred ChhhhHHHHHHHHHHHHh-cCCcEEEECCEEeCCCHHHHHHHcCCCCC
Confidence 223667777777777654 45778877766677654433455566654
No 64
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=66.28 E-value=19 Score=37.56 Aligned_cols=105 Identities=13% Similarity=0.097 Sum_probs=62.3
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-cccccCCCCccChhHHHHHHHHHHHHHHcC-CeeEEEeccCCCchhhHhhcCCCCC
Q 014785 80 KEDIDLIAKLGFDAYRFSI-SWS-RIFPDGLGTKINMEGITFYNNIIDALLQKG-IQPYVTLYHWDLPLHLHESMGGWLN 156 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si-~W~-ri~p~~~g~~~n~~~~~~y~~~i~~l~~~g-i~p~~tL~h~~~P~~l~~~~gg~~~ 156 (418)
++.+++|+++|+|-+-++| +-+ ++... -|...+ .+-..+.|+.+++.| +.+.++|. +++|. .+
T Consensus 163 ~e~l~~l~~aGvnRiSiGVQSf~d~vLk~-lgR~~~---~~~~~~~i~~l~~~g~~~v~~DlI-~GlPg---------qT 228 (449)
T PRK09058 163 DEKADAALDAGANRFSIGVQSFNTQVRRR-AGRKDD---REEVLARLEELVARDRAAVVCDLI-FGLPG---------QT 228 (449)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCHHHHHH-hCCCCC---HHHHHHHHHHHHhCCCCcEEEEEE-eeCCC---------CC
Confidence 6889999999999888877 322 12211 131123 355668899999999 66666665 56664 12
Q ss_pred hHhHHHHHHHHHHHHHHhCCcceEEEEccCCccccccCccccccC
Q 014785 157 KEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFA 201 (418)
Q Consensus 157 ~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~~ 201 (418)
.+.|.+=.+.+.+.=-+.|..+...-+|+......+..|.++
T Consensus 229 ---~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~l~~~~~~g~l~ 270 (449)
T PRK09058 229 ---PEIWQQDLAIVRDLGLDGVDLYALNLLPGTPLAKAVEKGKLP 270 (449)
T ss_pred ---HHHHHHHHHHHHhcCCCEEEEeccccCCCCHHHHHHHcCCCC
Confidence 233333344444333367888888888876443323334443
No 65
>PRK12313 glycogen branching enzyme; Provisional
Probab=64.65 E-value=35 Score=37.22 Aligned_cols=94 Identities=18% Similarity=0.322 Sum_probs=59.9
Q ss_pred cccchHHH-HHHHHHcCCCeeeec-c-------cc-------ccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 75 HYHRYKED-IDLIAKLGFDAYRFS-I-------SW-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 75 ~y~~~~eD-i~l~~~lG~~~~R~s-i-------~W-------~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
.|.-..+. |+-+|+||++++=+. | +| -.|.|.= | . .+=++++|++|+++||++|+.+
T Consensus 168 ~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~-G-t-----~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 168 SYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY-G-T-----PEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC-C-C-----HHHHHHHHHHHHHCCCEEEEEE
Confidence 34445567 499999999999865 2 22 1122221 3 2 4458999999999999999984
Q ss_pred --ccCCCch----hhH--------h---h-cCCC-------CChHhHHHHHHHHHHHHHHhC
Q 014785 139 --YHWDLPL----HLH--------E---S-MGGW-------LNKEIVKYFEIYADTCFASFG 175 (418)
Q Consensus 139 --~h~~~P~----~l~--------~---~-~gg~-------~~~~~~~~f~~ya~~~~~~~~ 175 (418)
.|+.... ++. + . +.+| .++++.+.+.+-++.-+++||
T Consensus 241 V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 241 VPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred CCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 3543111 110 0 0 0123 367888888888888888875
No 66
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=64.02 E-value=20 Score=34.93 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=60.7
Q ss_pred chHHHHHHHHHcCCCeeeeccccccccccC-CCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCC
Q 014785 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLN 156 (418)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~-~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~ 156 (418)
+-+.|++++++.|++.+++.++=|...-.. .+ .--++.++...++|..+++.|+++.+++-+|+.|.
T Consensus 75 ~~~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~-~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~----------- 142 (280)
T cd07945 75 DGDKSVDWIKSAGAKVLNLLTKGSLKHCTEQLR-KTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGM----------- 142 (280)
T ss_pred CcHHHHHHHHHCCCCEEEEEEeCCHHHHHHHHC-cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCC-----------
Confidence 346799999999999999998544443322 13 33467789999999999999999999998776664
Q ss_pred hHhHHHHHHHHHHHHH
Q 014785 157 KEIVKYFEIYADTCFA 172 (418)
Q Consensus 157 ~~~~~~f~~ya~~~~~ 172 (418)
+...+.+.++++.+.+
T Consensus 143 r~~~~~~~~~~~~~~~ 158 (280)
T cd07945 143 RDSPDYVFQLVDFLSD 158 (280)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 1124666777777644
No 67
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=63.68 E-value=24 Score=34.27 Aligned_cols=70 Identities=14% Similarity=0.044 Sum_probs=46.9
Q ss_pred ccCccccchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEecc
Q 014785 71 VAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (418)
Q Consensus 71 ~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h 140 (418)
.+.-.+..+++-|+..+++|+..+=+.--|+.-.+...........-....++++-.+++|+.+++-.+|
T Consensus 26 ~~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~ 95 (273)
T PF10566_consen 26 KHGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHS 95 (273)
T ss_dssp -BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEEC
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeC
Confidence 3455688899999999999999999999998733222100111111245789999999999999988876
No 68
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=63.39 E-value=46 Score=32.60 Aligned_cols=106 Identities=15% Similarity=0.201 Sum_probs=69.5
Q ss_pred hHHHHHHHHHcC--CCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccC---CCchhhHhh---
Q 014785 79 YKEDIDLIAKLG--FDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLHES--- 150 (418)
Q Consensus 79 ~~eDi~l~~~lG--~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~---~~P~~l~~~--- 150 (418)
..+-++.+++.| ++++=+.+.|.+-.-.+.- .+|++-+---..+|++|+++|+++++.+.-+ +.|..-+.+
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f-~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g 104 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQWCDF-EFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKG 104 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcceee-EECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCC
Confidence 467789999999 5567777888754321112 5666666667899999999999988876533 223221100
Q ss_pred ----------c--------CC---CCChHhHHHHHHHHHHHHHHhCCcce-EEEEccCCc
Q 014785 151 ----------M--------GG---WLNKEIVKYFEIYADTCFASFGDRVK-NWITINEPL 188 (418)
Q Consensus 151 ----------~--------gg---~~~~~~~~~f~~ya~~~~~~~~d~v~-~w~t~NEp~ 188 (418)
+ ++ ++||++.+.|.+..+.+.+ .| |+ +|+=+||+.
T Consensus 105 ~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G--id~~~~D~~e~~ 161 (308)
T cd06593 105 YLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG--VDCFKTDFGERI 161 (308)
T ss_pred eEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC--CcEEecCCCCCC
Confidence 0 12 5789999998888776554 44 33 556688873
No 69
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism]
Probab=63.16 E-value=43 Score=34.80 Aligned_cols=88 Identities=19% Similarity=0.385 Sum_probs=58.5
Q ss_pred hHHH-HHHHHHcCCCeeee-------------------------ccccccccccCCCCccChhHHHHHHHHHHHHHHcCC
Q 014785 79 YKED-IDLIAKLGFDAYRF-------------------------SISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGI 132 (418)
Q Consensus 79 ~~eD-i~l~~~lG~~~~R~-------------------------si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi 132 (418)
++.| ++++|+|.+..+|+ .+.|...|+.+.| ..++++.|+..|.
T Consensus 50 ~RkDVle~lk~Lk~P~lR~PGGnFvs~Y~WeDGIGP~e~Rp~rldlaW~t~EtN~~G----------t~EF~~~~e~iGa 119 (501)
T COG3534 50 FRKDVLEALKDLKIPVLRWPGGNFVSGYHWEDGIGPREERPRRLDLAWGTTETNEFG----------THEFMDWCELIGA 119 (501)
T ss_pred hHHHHHHHHHhcCCceeecCCcccccccccccCcCchhhCchhhccccccccccccc----------HHHHHHHHHHhCC
Confidence 3555 79999999999984 3344433333222 4689999999999
Q ss_pred eeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHHHH--------HHHHhCC----cceEEEEccCCc
Q 014785 133 QPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADT--------CFASFGD----RVKNWITINEPL 188 (418)
Q Consensus 133 ~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~--------~~~~~~d----~v~~w~t~NEp~ 188 (418)
+|++++.= |. ...+.+..|.+||.. .-...|- .||+|.+=||-.
T Consensus 120 ep~~avN~-----------Gs-rgvd~ar~~vEY~n~pggtywsdlR~~~G~~~P~nvK~w~lGNEm~ 175 (501)
T COG3534 120 EPYIAVNL-----------GS-RGVDEARNWVEYCNHPGGTYWSDLRRENGREEPWNVKYWGLGNEMD 175 (501)
T ss_pred ceEEEEec-----------CC-ccHHHHHHHHHHccCCCCChhHHHHHhcCCCCCcccceEEeccccC
Confidence 99999952 21 233556667776643 2233443 499999999964
No 70
>PLN02784 alpha-amylase
Probab=62.96 E-value=18 Score=40.57 Aligned_cols=65 Identities=17% Similarity=0.280 Sum_probs=46.4
Q ss_pred ccccchHHHHHHHHHcCCCeeeeccccccccccCCC----CccChh--HHHHHHHHHHHHHHcCCeeEEEe
Q 014785 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG----TKINME--GITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 74 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g----~~~n~~--~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
.+|....+.++-|++||++++=++=.-....+.|-. ..+|.. ..+-++.+|++|+++||++|+.+
T Consensus 518 ~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 518 RWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred chHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 578889999999999999999887543333332210 011211 24568999999999999999975
No 71
>PRK05402 glycogen branching enzyme; Provisional
Probab=62.25 E-value=54 Score=36.50 Aligned_cols=93 Identities=18% Similarity=0.299 Sum_probs=58.8
Q ss_pred ccchHHHH-HHHHHcCCCeeeec-c-c------cc-------cccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEe-
Q 014785 76 YHRYKEDI-DLIAKLGFDAYRFS-I-S------WS-------RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL- 138 (418)
Q Consensus 76 y~~~~eDi-~l~~~lG~~~~R~s-i-~------W~-------ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL- 138 (418)
|.-..+.+ +-+|+||++++=+. | + |- .|.|.= | . .+-++++|++|+++||++|+.+
T Consensus 264 ~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~-G-t-----~~dfk~lV~~~H~~Gi~VilD~V 336 (726)
T PRK05402 264 YRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF-G-T-----PDDFRYFVDACHQAGIGVILDWV 336 (726)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc-C-C-----HHHHHHHHHHHHHCCCEEEEEEC
Confidence 44444564 88999999999776 3 1 21 122221 3 2 4558899999999999999985
Q ss_pred -ccCCC-----------chhhHh-----hcCC-------CCChHhHHHHHHHHHHHHHHhC
Q 014785 139 -YHWDL-----------PLHLHE-----SMGG-------WLNKEIVKYFEIYADTCFASFG 175 (418)
Q Consensus 139 -~h~~~-----------P~~l~~-----~~gg-------~~~~~~~~~f~~ya~~~~~~~~ 175 (418)
.|+.. |.+... .+.. +.++++.+.+.+-++.-+++||
T Consensus 337 ~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 337 PAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred CCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 35422 111110 0111 3467888888888888888875
No 72
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=62.21 E-value=20 Score=38.44 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=42.0
Q ss_pred ccccchHHHHHHHHHcCCCeeeeccccccccccCCC------CccCh--hHHHHHHHHHHHHHHcCCeeEEEec
Q 014785 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG------TKINM--EGITFYNNIIDALLQKGIQPYVTLY 139 (418)
Q Consensus 74 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g------~~~n~--~~~~~y~~~i~~l~~~gi~p~~tL~ 139 (418)
..+.-..+-++-+++||++++=++=-...-.-. .| ..+|+ -..+-++++|++|+++||++|+.+-
T Consensus 24 G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~-~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v 96 (543)
T TIGR02403 24 GDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKD-NGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMV 96 (543)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEECCcccCCCCC-CCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 445556778999999999999776322211000 01 01111 1245689999999999999999863
No 73
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=61.39 E-value=19 Score=37.77 Aligned_cols=66 Identities=23% Similarity=0.282 Sum_probs=43.1
Q ss_pred ccccchHHHHHHHHHcCCCeeeeccccccc--------cccCC---CC-----ccChh--HHHHHHHHHHHHHHcCCeeE
Q 014785 74 DHYHRYKEDIDLIAKLGFDAYRFSISWSRI--------FPDGL---GT-----KINME--GITFYNNIIDALLQKGIQPY 135 (418)
Q Consensus 74 d~y~~~~eDi~l~~~lG~~~~R~si~W~ri--------~p~~~---g~-----~~n~~--~~~~y~~~i~~l~~~gi~p~ 135 (418)
+.|....+-++-+++||++++=++=...-. -|..- ++ .+|.. ..+=++++|++|+++||++|
T Consensus 19 ~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 19 KLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred cHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 456666778999999999999887432221 11100 00 11111 24558999999999999999
Q ss_pred EEec
Q 014785 136 VTLY 139 (418)
Q Consensus 136 ~tL~ 139 (418)
+.+-
T Consensus 99 ~D~V 102 (479)
T PRK09441 99 ADVV 102 (479)
T ss_pred EEEC
Confidence 9753
No 74
>PRK14706 glycogen branching enzyme; Provisional
Probab=61.35 E-value=33 Score=37.58 Aligned_cols=89 Identities=17% Similarity=0.260 Sum_probs=53.4
Q ss_pred HHHHHHcCCCeeeec-c-ccccccccC-C-CC------ccCh--hHHHHHHHHHHHHHHcCCeeEEEec--cCC------
Q 014785 83 IDLIAKLGFDAYRFS-I-SWSRIFPDG-L-GT------KINM--EGITFYNNIIDALLQKGIQPYVTLY--HWD------ 142 (418)
Q Consensus 83 i~l~~~lG~~~~R~s-i-~W~ri~p~~-~-g~------~~n~--~~~~~y~~~i~~l~~~gi~p~~tL~--h~~------ 142 (418)
++-+|+||++++-+. | +- |.. . |. .++. -..+=++.+|++|+++||++|+.+. |+.
T Consensus 174 ~~ylk~lG~t~velmPv~e~----~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l 249 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEH----PFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGL 249 (639)
T ss_pred HHHHHHcCCCEEEccchhcC----CCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEecccccCcchhhh
Confidence 367999999998765 2 11 110 0 10 0000 1134588999999999999999754 432
Q ss_pred -----Cchh-hHhhcCC----C-------CChHhHHHHHHHHHHHHHHhC
Q 014785 143 -----LPLH-LHESMGG----W-------LNKEIVKYFEIYADTCFASFG 175 (418)
Q Consensus 143 -----~P~~-l~~~~gg----~-------~~~~~~~~f~~ya~~~~~~~~ 175 (418)
.|.+ ..+...| | .++++.+.+.+=++.-+++|+
T Consensus 250 ~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 250 AHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred hccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 1211 0100011 2 257888888888888888885
No 75
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=60.83 E-value=38 Score=33.25 Aligned_cols=85 Identities=13% Similarity=0.040 Sum_probs=52.8
Q ss_pred HHHHHcCCCeeeeccc--cccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHH
Q 014785 84 DLIAKLGFDAYRFSIS--WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVK 161 (418)
Q Consensus 84 ~l~~~lG~~~~R~si~--W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~ 161 (418)
+.+.+.|++++-+++- -....|.-.| .............|..|+++|++++|++--+.-.... .+...++
T Consensus 19 ~~~~~~g~~~v~lAFi~~~~~~~~~w~g-~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~-------~~~~~~~ 90 (294)
T cd06543 19 TYAAATGVKAFTLAFIVASGGCKPAWGG-SYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPLA-------TSCTSAD 90 (294)
T ss_pred HHHHHcCCCEEEEEEEEcCCCCcccCCC-CCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCccc-------cCcccHH
Confidence 5677899998887742 2222222111 1110112445778999999999999988543322100 1456788
Q ss_pred HHHHHHHHHHHHhCC
Q 014785 162 YFEIYADTCFASFGD 176 (418)
Q Consensus 162 ~f~~ya~~~~~~~~d 176 (418)
.|++....+.++|+-
T Consensus 91 ~~~~a~~~~i~~y~~ 105 (294)
T cd06543 91 QLAAAYQKVIDAYGL 105 (294)
T ss_pred HHHHHHHHHHHHhCC
Confidence 888888888889873
No 76
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=60.61 E-value=82 Score=30.97 Aligned_cols=138 Identities=16% Similarity=0.165 Sum_probs=75.3
Q ss_pred cccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCC---chh----------hHhhcCC-----CC---ChHhH
Q 014785 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLH----------LHESMGG-----WL---NKEIV 160 (418)
Q Consensus 102 ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~---P~~----------l~~~~gg-----~~---~~~~~ 160 (418)
+..|...| -++++-+..++++++.++++|-+.++=|.|-.- |.. ......+ -+ =.+++
T Consensus 62 ~~~~~~~~-~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i 140 (327)
T cd02803 62 KGYPGQLG-IYDDEQIPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQII 140 (327)
T ss_pred cCCCCCcC-cCCHHHHHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHH
Confidence 33444336 688899999999999999999999999999421 110 0000000 11 13578
Q ss_pred HHHHHHHHHHHHHhCCcceEEEEccCCccccccCcccccc-CCCCCC-CCCChHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 014785 161 KYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF-APGRHQ-HSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQ 238 (418)
Q Consensus 161 ~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~-~P~~~~-~~~~~~~~~~~n~l~Aha~a~~~~r~~~~~~~ 238 (418)
+.|++-|+.+.+.=-|-|. +.+-.||+...| .|.... .+..- -.+-|-+.--.+.++.+|+.. .+
T Consensus 141 ~~~~~aA~~a~~aGfDgve---------ih~~~gyL~~qFlsp~~n~R~d~yG--gs~enr~r~~~eii~avr~~~--g~ 207 (327)
T cd02803 141 EDFAAAARRAKEAGFDGVE---------IHGAHGYLLSQFLSPYTNKRTDEYG--GSLENRARFLLEIVAAVREAV--GP 207 (327)
T ss_pred HHHHHHHHHHHHcCCCEEE---------EcchhhhHHHHhcCccccCCCcccC--CCHHHHHHHHHHHHHHHHHHc--CC
Confidence 8888888877653223333 334467765443 232100 01000 011122222335666777653 24
Q ss_pred CCeEEEEecCccccc
Q 014785 239 GGNIGLVVDCEWAEA 253 (418)
Q Consensus 239 ~~~IG~~~~~~~~~P 253 (418)
+..||+-++.....+
T Consensus 208 d~~i~vris~~~~~~ 222 (327)
T cd02803 208 DFPVGVRLSADDFVP 222 (327)
T ss_pred CceEEEEechhccCC
Confidence 567888887554433
No 77
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=59.81 E-value=28 Score=35.04 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=61.5
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccC-CCCccChhHHHHHHHHHHHHHHcCCeeEEEecc-CCCchhhHhhcCCCCC
Q 014785 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYH-WDLPLHLHESMGGWLN 156 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~-~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h-~~~P~~l~~~~gg~~~ 156 (418)
-.+|++++.+.|++.+++.++=|...-.. .+ .=-++.++.+.++|+.++++|+++.+++.. |..|. .|-.+
T Consensus 123 n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~-~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~------~~r~~ 195 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASASESFSKSNIN-CSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPI------EGPVP 195 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCc------cCCCC
Confidence 57999999999999999998655544332 13 334678899999999999999999877764 55553 23233
Q ss_pred hHhHHHHHHHHHHHHH
Q 014785 157 KEIVKYFEIYADTCFA 172 (418)
Q Consensus 157 ~~~~~~f~~ya~~~~~ 172 (418)
++.+.++++.+.+
T Consensus 196 ---~~~l~~~~~~~~~ 208 (347)
T PLN02746 196 ---PSKVAYVAKELYD 208 (347)
T ss_pred ---HHHHHHHHHHHHH
Confidence 5667777777654
No 78
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=59.61 E-value=17 Score=35.00 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccC-CCCccChhHHHHHHHHHHHHHHcCCeeEEEec
Q 014785 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~p~~-~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 139 (418)
.+|++.+.+.|++.+|+.++=|...-.. .+ .=-++.++...+++..+++.|+++.+++-
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~-~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTSPFLREASHG-KSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 6799999999999999988644432221 12 22356689999999999999999998884
No 79
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=58.95 E-value=51 Score=32.75 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=49.1
Q ss_pred HHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 014785 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (418)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P 144 (418)
.+.+|++|-++..|=+=|. |++.. .+|..-.++.+++.++|++.||-=++-+..++.+
T Consensus 111 ~~rike~GadavK~Llyy~---pD~~~-~in~~k~a~vervg~eC~a~dipf~lE~ltY~~~ 168 (324)
T PRK12399 111 AKRIKEEGADAVKFLLYYD---VDEPD-EINEQKKAYIERIGSECVAEDIPFFLEILTYDEK 168 (324)
T ss_pred HHHHHHhCCCeEEEEEEEC---CCCCH-HHHHHHHHHHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 5889999999999998876 55533 6898889999999999999999988887665544
No 80
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=58.68 E-value=27 Score=33.86 Aligned_cols=55 Identities=11% Similarity=0.167 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCeeeeccccc-cccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 80 KEDIDLIAKLGFDAYRFSISWS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~-ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
+|.++.||++|++.+-++++-+ ++.+.-.+ .. .++.+.+.++.++++||.+.+.+
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~-~~---s~~~~~~ai~~l~~~Gi~v~~~~ 178 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIIS-TH---TYDDRVDTLENAKKAGLKVCSGG 178 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccC-CC---CHHHHHHHHHHHHHcCCEEEEeE
Confidence 7899999999999999998822 12222111 22 36778899999999999865443
No 81
>PRK03705 glycogen debranching enzyme; Provisional
Probab=57.55 E-value=23 Score=38.88 Aligned_cols=55 Identities=18% Similarity=0.355 Sum_probs=37.5
Q ss_pred HHHHHHcCCCeeeec-c-c---------------c-------ccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 83 IDLIAKLGFDAYRFS-I-S---------------W-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 83 i~l~~~lG~~~~R~s-i-~---------------W-------~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
|+-||+||++++=+. | + | -.+.|.= | .-....++-++++|++|+++||++|+.+
T Consensus 185 LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y-g-t~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 185 IAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY-A-SGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred hHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc-C-CCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 899999999999765 2 1 1 1122221 2 1111245679999999999999999985
Q ss_pred c
Q 014785 139 Y 139 (418)
Q Consensus 139 ~ 139 (418)
-
T Consensus 263 V 263 (658)
T PRK03705 263 V 263 (658)
T ss_pred c
Confidence 4
No 82
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=57.30 E-value=57 Score=32.52 Aligned_cols=59 Identities=20% Similarity=0.325 Sum_probs=49.8
Q ss_pred HHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 014785 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (418)
Q Consensus 82 Di~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P 144 (418)
+.+.+|++|-++..|=+=|. |++.- .+|..-.++.+++.++|++.||-=++-+..++.+
T Consensus 112 s~~rike~GadavK~Llyy~---pD~~~-ein~~k~a~vervg~eC~a~dipf~lE~l~Yd~~ 170 (329)
T PRK04161 112 SVKRLKEAGADAVKFLLYYD---VDGDE-EINDQKQAYIERIGSECTAEDIPFFLELLTYDER 170 (329)
T ss_pred hHHHHHHhCCCeEEEEEEEC---CCCCH-HHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCc
Confidence 46899999999999998876 55433 6888889999999999999999999988766544
No 83
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=56.87 E-value=47 Score=33.17 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=51.5
Q ss_pred HHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhH
Q 014785 81 EDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIV 160 (418)
Q Consensus 81 eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~ 160 (418)
.-|++|.+.|++-+=.|+- .|++ -....+..+.++++.+.+.|+++||.+. |+-|.. -|| +...+
T Consensus 20 ~Yi~~~~~~Gf~~IFtsl~----~~~~----~~~~~~~~~~ell~~Anklg~~vivDvn----Psil~~--l~~-S~~~l 84 (360)
T COG3589 20 AYIDRMHKYGFKRIFTSLL----IPEE----DAELYFHRFKELLKEANKLGLRVIVDVN----PSILKE--LNI-SLDNL 84 (360)
T ss_pred HHHHHHHHcCccceeeecc----cCCc----hHHHHHHHHHHHHHHHHhcCcEEEEEcC----HHHHhh--cCC-ChHHH
Confidence 4488999999987766653 3443 2335689999999999999999999994 888764 355 33445
Q ss_pred HHHHHH
Q 014785 161 KYFEIY 166 (418)
Q Consensus 161 ~~f~~y 166 (418)
+.|...
T Consensus 85 ~~f~e~ 90 (360)
T COG3589 85 SRFQEL 90 (360)
T ss_pred HHHHHh
Confidence 555554
No 84
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=56.80 E-value=90 Score=33.98 Aligned_cols=99 Identities=17% Similarity=0.238 Sum_probs=60.0
Q ss_pred ccchHHHH-HHHHHcCCCeeeec-cccccccccCCCC------ccC--hhHHHHHHHHHHHHHHcCCeeEEEec--cCC-
Q 014785 76 YHRYKEDI-DLIAKLGFDAYRFS-ISWSRIFPDGLGT------KIN--MEGITFYNNIIDALLQKGIQPYVTLY--HWD- 142 (418)
Q Consensus 76 y~~~~eDi-~l~~~lG~~~~R~s-i~W~ri~p~~~g~------~~n--~~~~~~y~~~i~~l~~~gi~p~~tL~--h~~- 142 (418)
|.-..+.+ +-+|+||++++=+. |..+.-... -|. .++ --..+=++++|++|+++||++|+.+- |..
T Consensus 155 ~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~-wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~~ 233 (613)
T TIGR01515 155 YRELADQLIPYVKELGFTHIELLPVAEHPFDGS-WGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFPK 233 (613)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcccCCCCCC-CCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcCC
Confidence 33444565 89999999999884 543211000 010 000 01134588999999999999999854 532
Q ss_pred ----------CchhhHhh-----cCCC-------CChHhHHHHHHHHHHHHHHhC
Q 014785 143 ----------LPLHLHES-----MGGW-------LNKEIVKYFEIYADTCFASFG 175 (418)
Q Consensus 143 ----------~P~~l~~~-----~gg~-------~~~~~~~~f~~ya~~~~~~~~ 175 (418)
.|.+.... +..| .++++.+.+.+-++..+++|+
T Consensus 234 ~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 234 DDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred ccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 11121100 0112 457888999999999998885
No 85
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=56.32 E-value=37 Score=32.13 Aligned_cols=82 Identities=21% Similarity=0.086 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccC-CCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChH
Q 014785 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKE 158 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~p~~-~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~ 158 (418)
+++++++++.|++.+|++++-+...-.. .+ .=.+..++...+.++.+++.|+++.+.+....-| ..
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~------------~~ 143 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLN-KSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC------------KT 143 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC------------CC
Confidence 8999999999999999999866321111 01 1112247788899999999999999999654433 12
Q ss_pred hHHHHHHHHHHHHHHhC
Q 014785 159 IVKYFEIYADTCFASFG 175 (418)
Q Consensus 159 ~~~~f~~ya~~~~~~~~ 175 (418)
..+.+.++++.+. .+|
T Consensus 144 ~~~~l~~~~~~~~-~~g 159 (265)
T cd03174 144 DPEYVLEVAKALE-EAG 159 (265)
T ss_pred CHHHHHHHHHHHH-HcC
Confidence 2455556666653 344
No 86
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=54.81 E-value=38 Score=33.10 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=61.8
Q ss_pred chHHHHHHHHHcCCCeeeeccccccccccC-CCCccChhHHHHHHHHHHHHHHcCCeeEEEecc-CCCchhhHhhcCCCC
Q 014785 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYH-WDLPLHLHESMGGWL 155 (418)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~-~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h-~~~P~~l~~~~gg~~ 155 (418)
.-.+|+++..+.|++.+++.++=|...-.. .+ .=-++.++...++|+.++++|+++..++.. |..|. .|..
T Consensus 80 ~~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~-~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~------~~~~ 152 (287)
T PRK05692 80 PNLKGLEAALAAGADEVAVFASASEAFSQKNIN-CSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY------EGEV 152 (287)
T ss_pred cCHHHHHHHHHcCCCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC------CCCC
Confidence 458999999999999999998654432111 13 334467888999999999999999888774 55553 3333
Q ss_pred ChHhHHHHHHHHHHHHHH
Q 014785 156 NKEIVKYFEIYADTCFAS 173 (418)
Q Consensus 156 ~~~~~~~f~~ya~~~~~~ 173 (418)
+ .+.+.++++.+.+.
T Consensus 153 ~---~~~~~~~~~~~~~~ 167 (287)
T PRK05692 153 P---PEAVADVAERLFAL 167 (287)
T ss_pred C---HHHHHHHHHHHHHc
Confidence 3 57777888877543
No 87
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=54.49 E-value=2.5e+02 Score=28.47 Aligned_cols=131 Identities=15% Similarity=0.087 Sum_probs=75.5
Q ss_pred CCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCC-------------chhhHhhc--------CCCCC---hHhHHHHH
Q 014785 109 GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL-------------PLHLHESM--------GGWLN---KEIVKYFE 164 (418)
Q Consensus 109 g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~-------------P~~l~~~~--------gg~~~---~~~~~~f~ 164 (418)
| -++++-+.-++++++.++++|-+.++=|+|-.- |..+.... -..+. .++++.|+
T Consensus 75 ~-l~~d~~i~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~ 153 (370)
T cd02929 75 R-LWDDGDIRNLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYV 153 (370)
T ss_pred C-cCCHHHHHHHHHHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHH
Confidence 5 678889999999999999999999999999432 10010000 00111 24778888
Q ss_pred HHHHHHHHHhCCcceEEEEccCCccccccCcccccc-CCCCCCCCCChHH-HHHHHHHHHHHHHHHHHHhhhcCCCCCeE
Q 014785 165 IYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF-APGRHQHSSTEPY-LVAHHQILAHAAAFSVYQRKYKDKQGGNI 242 (418)
Q Consensus 165 ~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~-~P~~~~~~~~~~~-~~~~n~l~Aha~a~~~~r~~~~~~~~~~I 242 (418)
+=|+.+.+-==|-|. +.+-.||+...| .|... ..+.-| -.+-|-+.--.+.++.+|+.. .++..|
T Consensus 154 ~AA~ra~~aGfDgVE---------ih~ahGyLl~QFlSp~~N--~RtD~yGGslenR~Rf~~eii~aIr~~v--g~~~~v 220 (370)
T cd02929 154 DAALRARDAGFDIVY---------VYAAHGYLPLQFLLPRYN--KRTDEYGGSLENRARFWRETLEDTKDAV--GDDCAV 220 (370)
T ss_pred HHHHHHHHcCCCEEE---------EcccccchHHHhhCcccc--CCccccCCChHhhhHHHHHHHHHHHHHc--CCCceE
Confidence 866665443223343 335567877654 23210 000001 112233443457778888764 256678
Q ss_pred EEEecCccccc
Q 014785 243 GLVVDCEWAEA 253 (418)
Q Consensus 243 G~~~~~~~~~P 253 (418)
|+-++.....|
T Consensus 221 ~vRls~~~~~~ 231 (370)
T cd02929 221 ATRFSVDELIG 231 (370)
T ss_pred EEEecHHHhcC
Confidence 98888655544
No 88
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=54.08 E-value=19 Score=34.41 Aligned_cols=58 Identities=26% Similarity=0.256 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccC-CCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~p~~-~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
.+|++...+.|++.+|+.++.|.+.-.. .+ .-.+++++-..++++.+++.|+++.+++
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 130 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVSDIHLAHKLG-KDRAWVLDQLRRLVGRAKDRGLFVSVGA 130 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999887664221 13 2335678889999999999999877555
No 89
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=53.40 E-value=33 Score=36.79 Aligned_cols=58 Identities=19% Similarity=0.320 Sum_probs=40.5
Q ss_pred cccchHHHHHHHHHcCCCeeeec-c-c------c-------ccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEec
Q 014785 75 HYHRYKEDIDLIAKLGFDAYRFS-I-S------W-------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (418)
Q Consensus 75 ~y~~~~eDi~l~~~lG~~~~R~s-i-~------W-------~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 139 (418)
.|.-..+-|+.+|+||++++-+. | + | -.+.|.= | ..+-++++|++|+++||++|+.+-
T Consensus 109 ~~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~-G------~~~e~k~lV~~aH~~Gi~VilD~V 181 (542)
T TIGR02402 109 TFDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY-G------GPDDLKALVDAAHGLGLGVILDVV 181 (542)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc-C------CHHHHHHHHHHHHHCCCEEEEEEc
Confidence 34555667899999999999876 2 1 2 1111111 2 245689999999999999999853
No 90
>PRK09505 malS alpha-amylase; Reviewed
Probab=53.28 E-value=30 Score=38.21 Aligned_cols=61 Identities=25% Similarity=0.420 Sum_probs=40.6
Q ss_pred hHHHHHHHHHcCCCeeeecccccccc-----------cc-C-CC------CccChh--HHHHHHHHHHHHHHcCCeeEEE
Q 014785 79 YKEDIDLIAKLGFDAYRFSISWSRIF-----------PD-G-LG------TKINME--GITFYNNIIDALLQKGIQPYVT 137 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~-----------p~-~-~g------~~~n~~--~~~~y~~~i~~l~~~gi~p~~t 137 (418)
..+=|+.+++||++++=++=-...+. |. + .| ..+|+. ..+=++++|++++++||++|+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45668999999999998874333221 00 0 01 012221 3566999999999999999997
Q ss_pred ec
Q 014785 138 LY 139 (418)
Q Consensus 138 L~ 139 (418)
+-
T Consensus 312 ~V 313 (683)
T PRK09505 312 VV 313 (683)
T ss_pred EC
Confidence 53
No 91
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=52.90 E-value=93 Score=30.77 Aligned_cols=80 Identities=13% Similarity=0.113 Sum_probs=51.0
Q ss_pred ccChhHHHHHHHHHHHHHHcCCeeEEEeccC---CCchhhHhh---------c-----------CC---CCChHhHHHHH
Q 014785 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLHES---------M-----------GG---WLNKEIVKYFE 164 (418)
Q Consensus 111 ~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~---~~P~~l~~~---------~-----------gg---~~~~~~~~~f~ 164 (418)
++|.+-+---.++|+.|+++|+++++.+.-+ +.+.+-+-+ . ++ |+||+..+.|.
T Consensus 59 ~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~ 138 (319)
T cd06591 59 KFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYW 138 (319)
T ss_pred EEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHH
Confidence 3555555556799999999999998876432 122211100 0 12 67888888887
Q ss_pred HHHHHHHHHhCCcceEEEEccCCcccc
Q 014785 165 IYADTCFASFGDRVKNWITINEPLQTA 191 (418)
Q Consensus 165 ~ya~~~~~~~~d~v~~w~t~NEp~~~~ 191 (418)
+..+..+...|= --+|+=+|||....
T Consensus 139 ~~~~~~~~~~Gv-dg~w~D~~Ep~~~~ 164 (319)
T cd06591 139 KQLKKNYYDKGV-DAWWLDAAEPEYSV 164 (319)
T ss_pred HHHHHHhhcCCC-cEEEecCCCCCccC
Confidence 766555444543 35788999998654
No 92
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=52.70 E-value=33 Score=38.26 Aligned_cols=95 Identities=16% Similarity=0.284 Sum_probs=58.5
Q ss_pred ccccchHH-HHHHHHHcCCCeeeeccccc---------------cccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEE
Q 014785 74 DHYHRYKE-DIDLIAKLGFDAYRFSISWS---------------RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (418)
Q Consensus 74 d~y~~~~e-Di~l~~~lG~~~~R~si~W~---------------ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~t 137 (418)
..|.-..+ -|+.+|+||++++-+.=-.. .+.|.- | . .+-++++|++|+++||.+|+.
T Consensus 247 gty~~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~-G-t-----p~dlk~LVd~aH~~GI~VilD 319 (758)
T PLN02447 247 NSYREFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS-G-T-----PEDLKYLIDKAHSLGLRVLMD 319 (758)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc-C-C-----HHHHHHHHHHHHHCCCEEEEE
Confidence 34544433 48999999999998762211 111111 2 1 345889999999999999998
Q ss_pred ecc--CCC-------------chhhHhhcCC----C-------CChHhHHHHHHHHHHHHHHhC
Q 014785 138 LYH--WDL-------------PLHLHESMGG----W-------LNKEIVKYFEIYADTCFASFG 175 (418)
Q Consensus 138 L~h--~~~-------------P~~l~~~~gg----~-------~~~~~~~~f~~ya~~~~~~~~ 175 (418)
+-+ +.- +.|+.....| | .++++...+.+=++.-+++|+
T Consensus 320 vV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 320 VVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred eccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 654 211 2233211011 2 346777777787888788774
No 93
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=52.64 E-value=32 Score=36.96 Aligned_cols=65 Identities=17% Similarity=0.317 Sum_probs=42.7
Q ss_pred CccccchHHHHHHHHHcCCCeeeeccccccccccCC-CC------ccCh--hHHHHHHHHHHHHHHcCCeeEEEec
Q 014785 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGL-GT------KINM--EGITFYNNIIDALLQKGIQPYVTLY 139 (418)
Q Consensus 73 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~-g~------~~n~--~~~~~y~~~i~~l~~~gi~p~~tL~ 139 (418)
..-+.-..+.++-+++||++++=++=-+.. |... |. .+|+ -..+-++++|++|+++||++|+.+-
T Consensus 29 ~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~--~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V 102 (551)
T PRK10933 29 TGDLRGVTQRLDYLQKLGVDAIWLTPFYVS--PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMV 102 (551)
T ss_pred CcCHHHHHHhhHHHHhCCCCEEEECCCCCC--CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 344555678899999999999987632211 1110 10 1111 1245689999999999999999764
No 94
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=52.58 E-value=49 Score=34.59 Aligned_cols=76 Identities=13% Similarity=0.150 Sum_probs=49.0
Q ss_pred HHHHHHHHHcCCCeeeeccc-cc-cccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCCh
Q 014785 80 KEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNK 157 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~-W~-ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~ 157 (418)
++.+++|+++|++.+-++++ -+ ++...- +-..+ ++.+.+.+..++++||.+.+++. +++|. .++
T Consensus 287 ~e~l~~l~~aG~~~v~iGiES~s~~~L~~~-~K~~~---~~~~~~~i~~~~~~Gi~v~~~~I-iGlPg---------et~ 352 (472)
T TIGR03471 287 YETLKVMKENGLRLLLVGYESGDQQILKNI-KKGLT---VEIARRFTRDCHKLGIKVHGTFI-LGLPG---------ETR 352 (472)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCHHHHHHh-cCCCC---HHHHHHHHHHHHHCCCeEEEEEE-EeCCC---------CCH
Confidence 56789999999998888873 22 122110 10133 55688999999999999887765 35553 345
Q ss_pred HhHHHHHHHHHH
Q 014785 158 EIVKYFEIYADT 169 (418)
Q Consensus 158 ~~~~~f~~ya~~ 169 (418)
+.+..-.+|+..
T Consensus 353 e~~~~ti~~~~~ 364 (472)
T TIGR03471 353 ETIRKTIDFAKE 364 (472)
T ss_pred HHHHHHHHHHHh
Confidence 555555555544
No 95
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=52.30 E-value=49 Score=34.81 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=41.6
Q ss_pred cccchHHH-----HHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 014785 75 HYHRYKED-----IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (418)
Q Consensus 75 ~y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P 144 (418)
.|..|.+| ++...+.|++.+|+..+-+.+ +-....|+.+++.|+....++.+-..|
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p 148 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI--------------RNLEKSIEVAKKHGAHVQGAISYTVSP 148 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH--------------HHHHHHHHHHHHCCCEEEEEEEeccCC
Confidence 36668888 899999999999998765432 334567788888888888777654345
No 96
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=52.00 E-value=51 Score=34.63 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=43.6
Q ss_pred cccchHHH-----HHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCch
Q 014785 75 HYHRYKED-----IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPL 145 (418)
Q Consensus 75 ~y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~ 145 (418)
.|..|.+| +++.++-|++.+|+.-.. |. ++-....|+.+++.|....+++.|=+.|.
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~l------------nd--~~n~~~ai~~ak~~G~~~~~~i~yt~sp~ 159 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDAL------------ND--PRNIQQALRAVKKTGKEAQLCIAYTTSPV 159 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEcccC------------CC--HHHHHHHHHHHHHcCCEEEEEEEEEeCCc
Confidence 47788889 999999999999986432 21 44466778888888888888888766664
No 97
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=51.87 E-value=1.1e+02 Score=30.58 Aligned_cols=84 Identities=25% Similarity=0.278 Sum_probs=59.3
Q ss_pred cCccccchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhc
Q 014785 72 AVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESM 151 (418)
Q Consensus 72 a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~ 151 (418)
|-=||+ |+- .-...+.|+..+|+. | | .+-. -+....+++.++++||-.=+..+|-.+..-+.++|
T Consensus 79 aDiHf~-~rl-a~~~~~~g~~k~RIN-------P---G-Nig~--~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky 143 (361)
T COG0821 79 ADIHFD-YRL-ALEAAECGVDKVRIN-------P---G-NIGF--KDRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKY 143 (361)
T ss_pred EEeecc-HHH-HHHhhhcCcceEEEC-------C---c-ccCc--HHHHHHHHHHHHHcCCCEEEecccCchhHHHHHHh
Confidence 444665 333 233446678888753 3 4 3322 23788999999999999999999999999999999
Q ss_pred CCCCChHhHHHHHHHHHHH
Q 014785 152 GGWLNKEIVKYFEIYADTC 170 (418)
Q Consensus 152 gg~~~~~~~~~f~~ya~~~ 170 (418)
|+-+.+..++--..+++.+
T Consensus 144 ~~pt~ealveSAl~~a~~~ 162 (361)
T COG0821 144 GGPTPEALVESALEHAELL 162 (361)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 8766555666555666654
No 98
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=51.85 E-value=67 Score=32.90 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=40.6
Q ss_pred cchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
..|++||++++++|+++|=+.|- .. . ..+ .+....+.+++.+.|.+.++++
T Consensus 17 ~dw~~di~~A~~~GIDgFaLNig------~~-d-~~~---~~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 17 EDWEADIRLAQAAGIDGFALNIG------SS-D-SWQ---PDQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred HHHHHHHHHHHHcCCCEEEEecc------cC-C-ccc---HHHHHHHHHHHHhcCCEEEEEe
Confidence 35899999999999999998886 11 2 344 3567788999999998888876
No 99
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=51.73 E-value=1.1e+02 Score=30.25 Aligned_cols=110 Identities=15% Similarity=0.209 Sum_probs=66.2
Q ss_pred HHHHHHHHHcCCC--eeeeccccccccccC--C-CCccChhHHHHHHHHHHHHHHcCCeeEEEeccC---CCchhhH--h
Q 014785 80 KEDIDLIAKLGFD--AYRFSISWSRIFPDG--L-GTKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLH--E 149 (418)
Q Consensus 80 ~eDi~l~~~lG~~--~~R~si~W~ri~p~~--~-g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~---~~P~~l~--~ 149 (418)
.+-++.+++.|+. ++=+++.|......+ . .-++|++-+---+++|+.|+++|++.++.+.-+ +.|..-+ +
T Consensus 27 ~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~ 106 (317)
T cd06598 27 DDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVK 106 (317)
T ss_pred HHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHh
Confidence 4445666666654 555666674432211 0 113455445556789999999999999887644 3343211 0
Q ss_pred h-c-------------------C---CCCChHhHHHHHHHHHHHHHHhCCcceEEEEccCCcccc
Q 014785 150 S-M-------------------G---GWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTA 191 (418)
Q Consensus 150 ~-~-------------------g---g~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~ 191 (418)
+ + + -++||+..+.|.+..+.+ ...|= --+|+=+|||....
T Consensus 107 ~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~Gv-dg~w~D~~Ep~~~~ 169 (317)
T cd06598 107 AGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQGV-TGWWGDLGEPEVHP 169 (317)
T ss_pred CCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhCCc-cEEEecCCCccccC
Confidence 0 0 1 156999999998877765 33332 23688999997543
No 100
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=51.63 E-value=69 Score=32.02 Aligned_cols=80 Identities=14% Similarity=0.131 Sum_probs=48.0
Q ss_pred cChhHHHHHHHHHHHHHHcCCeeEEEeccC-CCchhhHhh--cCCCCChHhHHHHHHHHHHHHHHhCCcceEEEEccCCc
Q 014785 112 INMEGITFYNNIIDALLQKGIQPYVTLYHW-DLPLHLHES--MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPL 188 (418)
Q Consensus 112 ~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~-~~P~~l~~~--~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~ 188 (418)
+|++.+---+.++++|++.|++.++.+.-+ ..-..+... +--|+||++.+.|.+..+.+.+ .|= .-+|+=+|||.
T Consensus 58 ~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~~l~~-~Gv-~~~W~DmnEp~ 135 (332)
T cd06601 58 TNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYKYLFD-IGL-EFVWQDMTTPA 135 (332)
T ss_pred ecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHHHHHh-CCC-ceeecCCCCcc
Confidence 343333334689999999999987765411 100000000 0126889999988776655433 332 24899999999
Q ss_pred ccccc
Q 014785 189 QTAVN 193 (418)
Q Consensus 189 ~~~~~ 193 (418)
++...
T Consensus 136 ~~~~~ 140 (332)
T cd06601 136 IMPSY 140 (332)
T ss_pred cccCC
Confidence 87543
No 101
>PRK14705 glycogen branching enzyme; Provisional
Probab=50.80 E-value=81 Score=37.21 Aligned_cols=92 Identities=17% Similarity=0.293 Sum_probs=56.7
Q ss_pred HHH-HHHHHHcCCCeeeec-c-------ccccccccC----CCCccChhHHHHHHHHHHHHHHcCCeeEEEec--cCCCc
Q 014785 80 KED-IDLIAKLGFDAYRFS-I-------SWSRIFPDG----LGTKINMEGITFYNNIIDALLQKGIQPYVTLY--HWDLP 144 (418)
Q Consensus 80 ~eD-i~l~~~lG~~~~R~s-i-------~W~ri~p~~----~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~--h~~~P 144 (418)
.+. |+-+|+||++++=+. | +|- -.|.+ +. .+- ..+=++.+|++|+++||.+|+.+- |+..=
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swG-Y~~~~y~ap~~-ryG--t~~dfk~lVd~~H~~GI~VILD~V~nH~~~d 843 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWG-YQVTSYFAPTS-RFG--HPDEFRFLVDSLHQAGIGVLLDWVPAHFPKD 843 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCC-CCccccCCcCc-ccC--CHHHHHHHHHHHHHCCCEEEEEeccccCCcc
Confidence 344 699999999999765 3 231 11111 00 111 244588999999999999999854 54211
Q ss_pred hhhHhhc----------------CC-------CCChHhHHHHHHHHHHHHHHhC
Q 014785 145 LHLHESM----------------GG-------WLNKEIVKYFEIYADTCFASFG 175 (418)
Q Consensus 145 ~~l~~~~----------------gg-------~~~~~~~~~f~~ya~~~~~~~~ 175 (418)
.|....+ .. +.++++.+.+.+=+..-+++|+
T Consensus 844 ~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 844 SWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred hhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 1110000 11 3457788888888888888885
No 102
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=50.73 E-value=53 Score=35.62 Aligned_cols=97 Identities=15% Similarity=0.097 Sum_probs=57.0
Q ss_pred cccchHHH-----HHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc----h
Q 014785 75 HYHRYKED-----IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP----L 145 (418)
Q Consensus 75 ~y~~~~eD-----i~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P----~ 145 (418)
-|.+|.+| +++.++.|++.+|++.+.+.+ +-....|+.+++.|.....++.+=+.| .
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~--------------~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~ 155 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP--------------RNLETALKAVRKVGAHAQGTLSYTTSPVHTLQ 155 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH--------------HHHHHHHHHHHHcCCeEEEEEEEeeCCccCHH
Confidence 35666665 999999999999998644322 335566777777777665555543334 2
Q ss_pred hhHhh----------------cCCCCChHhHHHHHHHHHHHHHHhCCcceEEEEccCCcc
Q 014785 146 HLHES----------------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (418)
Q Consensus 146 ~l~~~----------------~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 189 (418)
.+.+. -.|-..|.. ..+.++.+-++++ .--...+-|-..+
T Consensus 156 ~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~---~~~lv~~lk~~~~-~pi~~H~Hnt~Gl 211 (593)
T PRK14040 156 TWVDLAKQLEDMGVDSLCIKDMAGLLKPYA---AYELVSRIKKRVD-VPLHLHCHATTGL 211 (593)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCcCHHH---HHHHHHHHHHhcC-CeEEEEECCCCch
Confidence 22110 134455543 4455555556663 3235667777665
No 103
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=49.93 E-value=33 Score=36.66 Aligned_cols=62 Identities=19% Similarity=0.309 Sum_probs=39.6
Q ss_pred ccchHHHHHHHHHcCCCeeeeccccccccccCCC------CccChh--HHHHHHHHHHHHHHcCCeeEEEe
Q 014785 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG------TKINME--GITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 76 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g------~~~n~~--~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
+.-..+-++-+++||++++=++=-.+.-.- ..| ..+|++ ..+=++++|++++++||++|+.+
T Consensus 27 l~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~-~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 27 FPGLTSKLDYLKWLGVDALWLLPFFQSPLR-DDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHHHhHHHHHHCCCCEEEECCCcCCCCC-CCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 344566799999999999876621111000 001 012221 24568999999999999999975
No 104
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=48.84 E-value=89 Score=31.26 Aligned_cols=106 Identities=14% Similarity=0.046 Sum_probs=62.6
Q ss_pred HHHHHHHHHcCCC--eeeeccccccccccCCCCccChhHHHHH--HHHHHHHHHcCCeeEEEeccCCCc--------hhh
Q 014785 80 KEDIDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFY--NNIIDALLQKGIQPYVTLYHWDLP--------LHL 147 (418)
Q Consensus 80 ~eDi~l~~~lG~~--~~R~si~W~ri~p~~~g~~~n~~~~~~y--~~~i~~l~~~gi~p~~tL~h~~~P--------~~l 147 (418)
.+-++.+++.|+. ++=+.+.|..-. +.- ++|++-+--- +++|++|+++|++.++.+.-+-.+ .+-
T Consensus 27 ~~~~~~~r~~~iP~d~i~lD~~~~~~~--~~f-~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~ 103 (339)
T cd06602 27 KEVVENMRAAGIPLDVQWNDIDYMDRR--RDF-TLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYD 103 (339)
T ss_pred HHHHHHHHHhCCCcceEEECcccccCc--cce-ecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHH
Confidence 3445555555544 333444554221 111 3343333334 799999999999999887654332 111
Q ss_pred Hh--h-----------c--------CC---CCChHhHHHHHHHHHHHHHHhCCcceEEEEccCCcc
Q 014785 148 HE--S-----------M--------GG---WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (418)
Q Consensus 148 ~~--~-----------~--------gg---~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 189 (418)
+. + + ++ ++|++..+.|.+..+.+...+|- --+|+=+|||..
T Consensus 104 e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~Ep~~ 168 (339)
T cd06602 104 RGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPF-DGLWIDMNEPSN 168 (339)
T ss_pred HHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCC-cEEEecCCCCch
Confidence 10 0 0 11 67899999998888777766553 247888999864
No 105
>PRK10785 maltodextrin glucosidase; Provisional
Probab=48.60 E-value=40 Score=36.58 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=38.7
Q ss_pred hHHHHHHHHHcCCCeeeeccc-------------cccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEec
Q 014785 79 YKEDIDLIAKLGFDAYRFSIS-------------WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~-------------W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 139 (418)
..+-|+-+++||++++=++=- +-+|-|.= | ..+=++++|++|+++||++|+.+-
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~-G------t~~df~~Lv~~aH~rGikVilD~V 247 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQL-G------GDAALLRLRHATQQRGMRLVLDGV 247 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCccc-C------CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 456689999999999987721 11222221 2 245688999999999999999753
No 106
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=48.59 E-value=57 Score=31.61 Aligned_cols=84 Identities=12% Similarity=0.105 Sum_probs=59.9
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccC-CCCccChhHHHHHHHHHHHHHHcCCeeEEEecc-CCCchhhHhhcCCCCC
Q 014785 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYH-WDLPLHLHESMGGWLN 156 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~-~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h-~~~P~~l~~~~gg~~~ 156 (418)
-.+|++...+.|++.+++.++=|...-.. .+ .--++.++...+.+..+++.|+++.+++.. |+.|. +|-.
T Consensus 75 ~~~dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~-~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~------~~~~- 146 (274)
T cd07938 75 NLRGAERALAAGVDEVAVFVSASETFSQKNIN-CSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY------EGEV- 146 (274)
T ss_pred CHHHHHHHHHcCcCEEEEEEecCHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCC------CCCC-
Confidence 37899999999999999998655432221 13 223567889999999999999999988873 55553 2323
Q ss_pred hHhHHHHHHHHHHHHH
Q 014785 157 KEIVKYFEIYADTCFA 172 (418)
Q Consensus 157 ~~~~~~f~~ya~~~~~ 172 (418)
..+.+.++++.+.+
T Consensus 147 --~~~~~~~~~~~~~~ 160 (274)
T cd07938 147 --PPERVAEVAERLLD 160 (274)
T ss_pred --CHHHHHHHHHHHHH
Confidence 35667777777654
No 107
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=48.56 E-value=68 Score=35.98 Aligned_cols=101 Identities=20% Similarity=0.287 Sum_probs=66.0
Q ss_pred cCCCeeeeccc-cccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEecc---CCCchhhH--hh-c----------
Q 014785 89 LGFDAYRFSIS-WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH---WDLPLHLH--ES-M---------- 151 (418)
Q Consensus 89 lG~~~~R~si~-W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h---~~~P~~l~--~~-~---------- 151 (418)
+-+.++++++. |.+ .-+.- ++|+.-+---+.+|+.|++.||+.++.+.. -|.|+.=+ ++ |
T Consensus 294 IP~d~~~lD~~~~~~--~~~~F-~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~ 370 (772)
T COG1501 294 IPLDVFVLDIDFWMD--NWGDF-TWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIY 370 (772)
T ss_pred CcceEEEEeehhhhc--cccce-EECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEe
Confidence 45779999995 876 22212 455555555669999999999999998764 23333211 11 0
Q ss_pred --------CC---CCChHhHHHHHHHHHHHHHHhCCcceEEEEccCCcccccc
Q 014785 152 --------GG---WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVN 193 (418)
Q Consensus 152 --------gg---~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~ 193 (418)
++ |+||+..++|.+....-+..+|= .-+|.=+|||.+....
T Consensus 371 ~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv-~g~W~D~nEp~~~~~~ 422 (772)
T COG1501 371 QADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGV-DGFWNDMNEPEPFDGD 422 (772)
T ss_pred eecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCc-cEEEccCCCCcccccc
Confidence 11 68999999999733333334432 4589999999987543
No 108
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=48.33 E-value=55 Score=32.92 Aligned_cols=52 Identities=19% Similarity=0.248 Sum_probs=43.9
Q ss_pred HHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
++.++++|.+++-+-+-|. |+... .+|..-+++..++.++|.+.||..++-+
T Consensus 112 ve~a~~~GAdAVk~lv~~~---~d~~~-~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 112 VRRIKEAGADAVKLLLYYR---PDEDD-AINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred HHHHHHcCCCEEEEEEEeC---CCcch-HHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 5779999999999999886 55322 4688889999999999999999988864
No 109
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=48.26 E-value=86 Score=35.04 Aligned_cols=104 Identities=16% Similarity=0.284 Sum_probs=69.5
Q ss_pred HHHHHHHcCCC--eeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEec---cCCCc-----------h
Q 014785 82 DIDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY---HWDLP-----------L 145 (418)
Q Consensus 82 Di~l~~~lG~~--~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~---h~~~P-----------~ 145 (418)
=++.+.++|+. ..=..|.|-.-..+ - ++|..+.-...++++.|+++|++.++.+. +-+.. .
T Consensus 316 vv~~~~~agiPld~~~~DiDyMd~ykD--F-Tvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v 392 (805)
T KOG1065|consen 316 VVENYRAAGIPLDVIVIDIDYMDGYKD--F-TVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDV 392 (805)
T ss_pred HHHHHHHcCCCcceeeeehhhhhcccc--e-eeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhce
Confidence 36788888887 55556666433322 2 67888888899999999999999999886 22222 0
Q ss_pred hhHhhc----------CC------CCChHhHHHHHHHHHHHHHHhCCcce---EEEEccCCccccc
Q 014785 146 HLHESM----------GG------WLNKEIVKYFEIYADTCFASFGDRVK---NWITINEPLQTAV 192 (418)
Q Consensus 146 ~l~~~~----------gg------~~~~~~~~~f~~ya~~~~~~~~d~v~---~w~t~NEp~~~~~ 192 (418)
|+.+.+ -| ++|+++++++. ..+++|.+.|. +|+-+|||..++.
T Consensus 393 ~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~----~~~~~fh~~vp~dg~wiDmnE~snf~~ 454 (805)
T KOG1065|consen 393 LIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWL----DELKRFHDEVPFDGFWIDMNEPSNFPS 454 (805)
T ss_pred eeecccCchhhhcccCCCcccccccCCchHHHHHH----HHHHhhcccCCccceEEECCCcccCCC
Confidence 111100 12 56776666554 34557877765 8999999987653
No 110
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=48.11 E-value=42 Score=37.96 Aligned_cols=56 Identities=23% Similarity=0.318 Sum_probs=42.4
Q ss_pred ccchHHHHHHHHHcCCCeeeecc---------------ccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 76 YHRYKEDIDLIAKLGFDAYRFSI---------------SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 76 y~~~~eDi~l~~~lG~~~~R~si---------------~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
+....+-++-+++||++++=+|= ++.+|.|.- | +.+-+++++++++++||.+|+.+
T Consensus 19 f~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l-G------t~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 19 FDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL-G------GEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC-C------CHHHHHHHHHHHHHCCCEEEEEe
Confidence 44567889999999999986653 334444443 3 24568999999999999999975
No 111
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=48.08 E-value=28 Score=35.25 Aligned_cols=60 Identities=22% Similarity=0.123 Sum_probs=47.2
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccC-CCCccChhHHHHHHHHHHHHHHcCCeeEEEec
Q 014785 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~-~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 139 (418)
.++|++.+.+.|++.+|++++-|.+.-.. .+ .-.++.++...+.|..+++.|+++.+++-
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~-~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATSPIHLKYKLK-KSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 58999999999999999988776664332 13 23345688899999999999999887774
No 112
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=46.82 E-value=4.6e+02 Score=29.36 Aligned_cols=152 Identities=17% Similarity=0.172 Sum_probs=85.5
Q ss_pred cccccccCCCCccChhHHHHHHHHHHHHHHc-CCeeEEEeccCCC-----chhhHh----hcCCCC--------------
Q 014785 100 WSRIFPDGLGTKINMEGITFYNNIIDALLQK-GIQPYVTLYHWDL-----PLHLHE----SMGGWL-------------- 155 (418)
Q Consensus 100 W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~-gi~p~~tL~h~~~-----P~~l~~----~~gg~~-------------- 155 (418)
-+|+.|...| -++.+-+..++++++.++++ |-+.++=|.|-.- +.|... ..|||.
T Consensus 458 ~g~~~~~~~~-~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~ 536 (765)
T PRK08255 458 EGRITPGCPG-LYNDEQEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQ 536 (765)
T ss_pred CcCCCCCCCc-cCCHHHHHHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCceeCCCCCcCCCCCC
Confidence 3456665446 78999999999999999999 6999999999321 111100 002220
Q ss_pred -----C----hHhHHHHHHHHHHHHHHhC-CcceEEEEccCCccccccCcccccc-CCCCCCCCCChHH-HHHHHHHHHH
Q 014785 156 -----N----KEIVKYFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIF-APGRHQHSSTEPY-LVAHHQILAH 223 (418)
Q Consensus 156 -----~----~~~~~~f~~ya~~~~~~~~-d~v~~w~t~NEp~~~~~~gy~~g~~-~P~~~~~~~~~~~-~~~~n~l~Ah 223 (418)
+ .++++.|++=|+.+.+ -| |-|. +.+-.||+...| -|-... .+.-| -.+-|-+.--
T Consensus 537 ~p~~mt~~eI~~~i~~f~~aA~~a~~-aGfDgve---------ih~ahGyLl~qFlsp~~N~--RtD~yGGslenR~r~~ 604 (765)
T PRK08255 537 VPREMTRADMDRVRDDFVAAARRAAE-AGFDWLE---------LHCAHGYLLSSFISPLTNQ--RTDEYGGSLENRLRYP 604 (765)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHH-cCCCEEE---------EecccchHHHHhcCCCCCC--CCCCCCCCHHHHhHHH
Confidence 1 2367888887766543 44 3332 335677876554 233210 01001 1223444444
Q ss_pred HHHHHHHHhhhcCCCCCeEEEEecCcccccCCCCHHHH-HHHHH
Q 014785 224 AAAFSVYQRKYKDKQGGNIGLVVDCEWAEANSDKIEDK-SAAAR 266 (418)
Q Consensus 224 a~a~~~~r~~~~~~~~~~IG~~~~~~~~~P~~~~p~d~-~AA~~ 266 (418)
.+.++++|+.. .++-.||+-++..-+.+...+++|. ..|+.
T Consensus 605 ~eiv~~ir~~~--~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~ 646 (765)
T PRK08255 605 LEVFRAVRAVW--PAEKPMSVRISAHDWVEGGNTPDDAVEIARA 646 (765)
T ss_pred HHHHHHHHHhc--CCCCeeEEEEccccccCCCCCHHHHHHHHHH
Confidence 57788888864 2456789888865444433445553 33443
No 113
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=46.78 E-value=1.1e+02 Score=31.65 Aligned_cols=109 Identities=18% Similarity=0.239 Sum_probs=69.1
Q ss_pred chHHHHHHHHHcCCC--eeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccC---CCc---hhhHh
Q 014785 78 RYKEDIDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLP---LHLHE 149 (418)
Q Consensus 78 ~~~eDi~l~~~lG~~--~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~---~~P---~~l~~ 149 (418)
...+-++.+++.|+. ++=++..|..-..+ - ++|++-+.-.+++++.|+++|++.++.++-+ +.+ ..-..
T Consensus 44 ~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~--f-~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~ 120 (441)
T PF01055_consen 44 EVREVIDRYRSNGIPLDVIWIDDDYQDGYGD--F-TWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEA 120 (441)
T ss_dssp HHHHHHHHHHHTT--EEEEEE-GGGSBTTBT--T--B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHH
T ss_pred HHHHHHHHHHHcCCCccceeccccccccccc--c-ccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhH
Confidence 345667888887776 44455566653321 2 6777667678999999999999988776532 222 11110
Q ss_pred h--------cCC----------------CCChHhHHHHHHHHHHHHHHhCCcceEEEEccCCccc
Q 014785 150 S--------MGG----------------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (418)
Q Consensus 150 ~--------~gg----------------~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~ 190 (418)
+ ..| |.+++..+.|.+..+.+++.+|=. -+|+=+|||..+
T Consensus 121 ~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvd-g~w~D~~E~~~~ 184 (441)
T PF01055_consen 121 KEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVD-GWWLDFGEPSSF 184 (441)
T ss_dssp HHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-S-EEEEESTTTBSS
T ss_pred hhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCc-eEEeecCCcccc
Confidence 0 012 789999999988888877776533 478899999975
No 114
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=46.30 E-value=81 Score=32.31 Aligned_cols=104 Identities=15% Similarity=0.185 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCCeeeeccc-c-ccccccCCCCccChhHHHHHHHHHHHHHHcCCe-eEEEeccCCCchhhHhhcCCCCC
Q 014785 80 KEDIDLIAKLGFDAYRFSIS-W-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGWLN 156 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~-W-~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~-p~~tL~h~~~P~~l~~~~gg~~~ 156 (418)
++.++.|+++|+|.+-+++. - .++...- |...+ .+-..+.++.+++.|+. +-++|. +++|. .+
T Consensus 115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l-~R~~~---~~~~~~ai~~l~~~G~~~v~~dlI-~GlPg---------qt 180 (400)
T PRK07379 115 LEQLQGYRSLGVNRVSLGVQAFQDELLALC-GRSHR---VKDIFAAVDLIHQAGIENFSLDLI-SGLPH---------QT 180 (400)
T ss_pred HHHHHHHHHCCCCEEEEEcccCCHHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------CC
Confidence 68899999999996666652 1 1222111 21233 34566889999999998 556664 56664 12
Q ss_pred hHhHHHHHHHHHHHHHHhCCcceEEEEccCCccccccCcccccc
Q 014785 157 KEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF 200 (418)
Q Consensus 157 ~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~ 200 (418)
.+.+.+=++.+.+-=-++|..+...-||+.....-+..|.+
T Consensus 181 ---~e~~~~tl~~~~~l~p~~is~y~L~~~pgT~l~~~~~~g~~ 221 (400)
T PRK07379 181 ---LEDWQASLEAAIALNPTHLSCYDLVLEPGTAFGKQYQPGKA 221 (400)
T ss_pred ---HHHHHHHHHHHHcCCCCEEEEecceecCCchhHHHhhcCCC
Confidence 23333333333332236777777777887654443444443
No 115
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=46.03 E-value=36 Score=36.98 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=36.5
Q ss_pred HHHHHHcCCCeeeec-c-cccccccc-CC-----CC------c------cCh----hHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 83 IDLIAKLGFDAYRFS-I-SWSRIFPD-GL-----GT------K------INM----EGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 83 i~l~~~lG~~~~R~s-i-~W~ri~p~-~~-----g~------~------~n~----~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
|+-||+||++++=+. | +...+... +. |. . .|+ ...+-++++|++|+++||++|+.+
T Consensus 170 LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDv 249 (605)
T TIGR02104 170 LDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDV 249 (605)
T ss_pred HHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEE
Confidence 899999999999876 2 22111000 00 00 0 011 124669999999999999999975
Q ss_pred c
Q 014785 139 Y 139 (418)
Q Consensus 139 ~ 139 (418)
-
T Consensus 250 V 250 (605)
T TIGR02104 250 V 250 (605)
T ss_pred E
Confidence 4
No 116
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=45.91 E-value=34 Score=40.35 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=40.0
Q ss_pred cccchH--HHHHHHHHcCCCeeeecccccccc-----ccC-C---C------CccCh----hHHHHHHHHHHHHHHcCCe
Q 014785 75 HYHRYK--EDIDLIAKLGFDAYRFSISWSRIF-----PDG-L---G------TKINM----EGITFYNNIIDALLQKGIQ 133 (418)
Q Consensus 75 ~y~~~~--eDi~l~~~lG~~~~R~si~W~ri~-----p~~-~---g------~~~n~----~~~~~y~~~i~~l~~~gi~ 133 (418)
-|.... +.|+-+|+||++++=+.=-..... +.+ . | ..++. ...+=++++|++|+++||+
T Consensus 183 t~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~ 262 (1221)
T PRK14510 183 TFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIA 262 (1221)
T ss_pred HHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCE
Confidence 344444 668899999999998762111110 000 0 0 01111 1466799999999999999
Q ss_pred eEEEe
Q 014785 134 PYVTL 138 (418)
Q Consensus 134 p~~tL 138 (418)
+|+.+
T Consensus 263 VILDv 267 (1221)
T PRK14510 263 VILDV 267 (1221)
T ss_pred EEEEE
Confidence 99974
No 117
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=45.47 E-value=95 Score=30.93 Aligned_cols=59 Identities=15% Similarity=0.307 Sum_probs=49.4
Q ss_pred HHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCch
Q 014785 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPL 145 (418)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~ 145 (418)
.+.+|++|-++..|=+=|. |++.- .+|..-.++.+++.++|++.||-=++-+..+|.+.
T Consensus 112 ~~rike~GadavK~Llyy~---pD~~~-ein~~k~a~vervg~ec~a~dipf~lE~ltYd~~~ 170 (325)
T TIGR01232 112 AKRLKEQGANAVKFLLYYD---VDDAE-EINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNI 170 (325)
T ss_pred HHHHHHhCCCeEEEEEEeC---CCCCh-HHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCC
Confidence 6899999999999988774 44323 68888899999999999999999999887776543
No 118
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=45.36 E-value=81 Score=31.92 Aligned_cols=93 Identities=12% Similarity=0.141 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccC---CCCccChhHHHHHHHHHHHHHHcCCee-EEEeccCCCchhhHhhcCCCC
Q 014785 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQP-YVTLYHWDLPLHLHESMGGWL 155 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~p~~---~g~~~n~~~~~~y~~~i~~l~~~gi~p-~~tL~h~~~P~~l~~~~gg~~ 155 (418)
++.++.|+++|+|.+.+++. .+-++- -|...+ .+-..+.|+.+++.|+.. -+.|. +++|.
T Consensus 103 ~~~l~~l~~~G~nrislGvQ--S~~~~~L~~l~R~~~---~~~~~~ai~~~~~~g~~~v~~Dli-~GlPg---------- 166 (370)
T PRK06294 103 ESYIRALALTGINRISIGVQ--TFDDPLLKLLGRTHS---SSKAIDAVQECSEHGFSNLSIDLI-YGLPT---------- 166 (370)
T ss_pred HHHHHHHHHCCCCEEEEccc--cCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC----------
Confidence 68899999999996655552 222221 121122 445667889999999974 45553 45663
Q ss_pred ChHhHHHHHHHHHHHHHHhCCcceEEEEccCCccc
Q 014785 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (418)
Q Consensus 156 ~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~ 190 (418)
++.+.|.+-.+.+.+.=-++|..+...-||+..
T Consensus 167 --qt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 167 --QSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred --CCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 234556666666554334678888888888754
No 119
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=45.23 E-value=1.3e+02 Score=30.08 Aligned_cols=80 Identities=13% Similarity=0.089 Sum_probs=52.0
Q ss_pred cChhHHHHHHHHHHHHHHcCCeeEEEeccCCC-----chhhHhh-------------c--------C---CCCChHhHHH
Q 014785 112 INMEGITFYNNIIDALLQKGIQPYVTLYHWDL-----PLHLHES-------------M--------G---GWLNKEIVKY 162 (418)
Q Consensus 112 ~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~-----P~~l~~~-------------~--------g---g~~~~~~~~~ 162 (418)
+|++-+---..+|+.|+++|++.++.+.-+-. |..-+.. + + -++||+..+.
T Consensus 58 ~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~w 137 (339)
T cd06603 58 WDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDW 137 (339)
T ss_pred eCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHH
Confidence 33333333467999999999998887764422 2221100 0 1 2679999999
Q ss_pred HHHHHHHHHHHhC-CcceEEEEccCCcccc
Q 014785 163 FEIYADTCFASFG-DRVKNWITINEPLQTA 191 (418)
Q Consensus 163 f~~ya~~~~~~~~-d~v~~w~t~NEp~~~~ 191 (418)
|.+..+.+....+ +-+-.|+=+|||.++.
T Consensus 138 w~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~ 167 (339)
T cd06603 138 WASLFSYDKYKGSTENLYIWNDMNEPSVFN 167 (339)
T ss_pred HHHHHHHHhhcccCCCceEEeccCCccccC
Confidence 9998887765432 2346889999998754
No 120
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=45.16 E-value=65 Score=30.56 Aligned_cols=74 Identities=11% Similarity=0.057 Sum_probs=46.0
Q ss_pred eccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHHHHHHHHhC
Q 014785 96 FSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (418)
Q Consensus 96 ~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 175 (418)
+.++|..+-++|.. ... ........+++.++++|+++++++..++...... -..+++..+.|++=+-..+++|+
T Consensus 26 v~~~f~~i~~~G~l-~~~-~~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~----~~~~~~~r~~fi~~lv~~~~~~~ 99 (253)
T cd06545 26 INLAFANPDANGTL-NAN-PVRSELNSVVNAAHAHNVKILISLAGGSPPEFTA----ALNDPAKRKALVDKIINYVVSYN 99 (253)
T ss_pred EEEEEEEECCCCeE-Eec-CcHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchh----hhcCHHHHHHHHHHHHHHHHHhC
Confidence 34456666555421 121 0124567889999999999999997665443221 12467777777776666667764
No 121
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=44.44 E-value=75 Score=29.85 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=42.7
Q ss_pred cccchHHHHHHHHHcCCCeeeeccccccccccCCC-CccChhHHHHHHHHHHHHHHcCCeeEEE-eccCCCc
Q 014785 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLG-TKINMEGITFYNNIIDALLQKGIQPYVT-LYHWDLP 144 (418)
Q Consensus 75 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g-~~~n~~~~~~y~~~i~~l~~~gi~p~~t-L~h~~~P 144 (418)
+-+.+++=|+++++||.+.+|+...+ . |.... .+..+..++...++.+.+.+.||...+= +++++.|
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~--~-~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~ 150 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGK--R-PAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMP 150 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCC--C-CCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCC
Confidence 34567778999999999999865432 1 11100 0222334566788888889999987774 3445444
No 122
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=44.27 E-value=66 Score=31.57 Aligned_cols=64 Identities=23% Similarity=0.495 Sum_probs=46.2
Q ss_pred chHHHHHHHHHcCCCeeeeccc----ccc---cccc------------CCCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 78 RYKEDIDLIAKLGFDAYRFSIS----WSR---IFPD------------GLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~----W~r---i~p~------------~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
..++-|+.|+..++|.+.+-++ |+- ..|+ +.| .+.++ =++++++.++++||++|.-+
T Consensus 17 ~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~-~yT~~---di~elv~yA~~rgI~viPEi 92 (303)
T cd02742 17 SIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGG-FYTYA---QLKDIIEYAAARGIEVIPEI 92 (303)
T ss_pred HHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCC-eECHH---HHHHHHHHHHHcCCEEEEec
Confidence 3577799999999999887775 521 1222 113 56644 47799999999999999887
Q ss_pred ccCCCchhhH
Q 014785 139 YHWDLPLHLH 148 (418)
Q Consensus 139 ~h~~~P~~l~ 148 (418)
|+|....
T Consensus 93 ---D~PGH~~ 99 (303)
T cd02742 93 ---DMPGHST 99 (303)
T ss_pred ---cchHHHH
Confidence 7786643
No 123
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=43.43 E-value=62 Score=32.52 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCeeeeccc-cc-cccccCCCCccChhHHHHHHHHHHHHHHcCCeeE-EEeccCCCch
Q 014785 80 KEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPL 145 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~-W~-ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~-~tL~h~~~P~ 145 (418)
++.++.|+++|++.+-+++. -+ ++...- |...+ .+-+.+.|+.+++.|+.++ +.|. +++|.
T Consensus 100 ~e~l~~l~~~Gv~risiGvqS~~~~~l~~l-gR~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlPg 163 (360)
T TIGR00539 100 AEWCKGLKGAGINRLSLGVQSFRDDKLLFL-GRQHS---AKNIAPAIETALKSGIENISLDLM-YGLPL 163 (360)
T ss_pred HHHHHHHHHcCCCEEEEecccCChHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEecc-CCCCC
Confidence 68899999999996666663 32 232221 31123 5668889999999999855 4442 56664
No 124
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=43.41 E-value=1.2e+02 Score=30.61 Aligned_cols=96 Identities=11% Similarity=0.049 Sum_probs=55.1
Q ss_pred HHHHHHHHHcCCCeeeeccc-cc-cccccCCCCccChhHHHHHHHHHHHHHHcCCe-eEEEeccCCCchhhHhhcCCCCC
Q 014785 80 KEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGWLN 156 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~-W~-ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~-p~~tL~h~~~P~~l~~~~gg~~~ 156 (418)
++.+++|+++|++.+.+++. -+ ++...- |...+ .+-..+.++.+++.|+. +.++|. +++|. .+
T Consensus 108 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l-~R~~s---~~~~~~a~~~l~~~g~~~v~~dli-~GlPg---------qt 173 (375)
T PRK05628 108 PEFFAALRAAGFTRVSLGMQSAAPHVLAVL-DRTHT---PGRAVAAAREARAAGFEHVNLDLI-YGTPG---------ES 173 (375)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ccCCC---------CC
Confidence 68899999999996666662 22 221111 21223 45677899999999998 555553 45553 12
Q ss_pred hHhHHHHHHHHHHHHHHhCCcceEEEEccCCccccc
Q 014785 157 KEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAV 192 (418)
Q Consensus 157 ~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~ 192 (418)
.+.|.+=.+.+.+.=-+.|..+...-+|+....
T Consensus 174 ---~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~l~ 206 (375)
T PRK05628 174 ---DDDWRASLDAALEAGVDHVSAYALIVEDGTALA 206 (375)
T ss_pred ---HHHHHHHHHHHHhcCCCEEEeeeeecCCCChHH
Confidence 344444444433322255665555556665433
No 125
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=43.23 E-value=3.5e+02 Score=27.01 Aligned_cols=134 Identities=13% Similarity=0.119 Sum_probs=75.1
Q ss_pred ccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchh----------hHhhcC-----CCCC---hHhHHHHHHHHHHHHH
Q 014785 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLH----------LHESMG-----GWLN---KEIVKYFEIYADTCFA 172 (418)
Q Consensus 111 ~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~----------l~~~~g-----g~~~---~~~~~~f~~ya~~~~~ 172 (418)
-++.+.+..++++.+.++++|-..++=|+|.+.-.. .....+ ..+. .++++.|++=|+.+.+
T Consensus 74 ~~~d~~i~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA~~a~~ 153 (337)
T PRK13523 74 IWDDEHIEGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAVRAKE 153 (337)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 568888999999999999999999999999543110 000000 0111 2578888887766544
Q ss_pred HhC-CcceEEEEccCCccccccCcccccc-CCCCCCC-CCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEecCc
Q 014785 173 SFG-DRVKNWITINEPLQTAVNGYCTGIF-APGRHQH-SSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIGLVVDCE 249 (418)
Q Consensus 173 ~~~-d~v~~w~t~NEp~~~~~~gy~~g~~-~P~~~~~-~~~~~~~~~~n~l~Aha~a~~~~r~~~~~~~~~~IG~~~~~~ 249 (418)
-| |-|. +.+-.||+...| .|..... +.-- -.+-|-+.--.+.++.+|+.. +..||+-++..
T Consensus 154 -aGfDgVe---------ih~ahGyLl~qFlSp~~N~RtD~yG--GslenR~Rf~~eii~~ir~~~----~~~v~vRis~~ 217 (337)
T PRK13523 154 -AGFDVIE---------IHGAHGYLINEFLSPLSNKRTDEYG--GSPENRYRFLREIIDAVKEVW----DGPLFVRISAS 217 (337)
T ss_pred -cCCCEEE---------EccccchHHHHhcCCccCCcCCCCC--CCHHHHHHHHHHHHHHHHHhc----CCCeEEEeccc
Confidence 33 3343 345668887654 3422000 1100 123333333345666777642 45688877754
Q ss_pred ccccCCCCHHH
Q 014785 250 WAEANSDKIED 260 (418)
Q Consensus 250 ~~~P~~~~p~d 260 (418)
.+.+-..++++
T Consensus 218 d~~~~G~~~~e 228 (337)
T PRK13523 218 DYHPGGLTVQD 228 (337)
T ss_pred ccCCCCCCHHH
Confidence 44433334444
No 126
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=43.09 E-value=3.5e+02 Score=26.98 Aligned_cols=135 Identities=17% Similarity=0.189 Sum_probs=74.9
Q ss_pred cccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCC---chh------------hHhhcC---------CC---
Q 014785 102 RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLH------------LHESMG---------GW--- 154 (418)
Q Consensus 102 ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~---P~~------------l~~~~g---------g~--- 154 (418)
+..|...+ -++.+-+..++++.+.++++|-..++=|.|... +.+ .... + +.
T Consensus 62 ~~~~~~~~-l~~d~~i~~lr~la~~vh~~ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~-~~~~~~~~~~~~~~p 139 (338)
T cd02933 62 QGYPNTPG-IYTDEQVEGWKKVTDAVHAKGGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAE-GKVFTPAGKVPYPTP 139 (338)
T ss_pred cCCCCCCc-cCCHHHHHHHHHHHHHHHhcCCeEEEEcccCccCCCcccccCCCCccCCCCCCCC-cccccccccCCCCCC
Confidence 33443334 668888999999999999999999999999432 111 0000 0 11
Q ss_pred ---C---ChHhHHHHHHHHHHHHHHhCCcceEEEEccCCccccccCcccccc-CCCCCC-CCCChHHHHHHHHHHHHHHH
Q 014785 155 ---L---NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF-APGRHQ-HSSTEPYLVAHHQILAHAAA 226 (418)
Q Consensus 155 ---~---~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~-~P~~~~-~~~~~~~~~~~n~l~Aha~a 226 (418)
+ =.++++.|++=|+.+.+-==|-|. +.+-.||+...| .|-... .+.-- -.+-|-+.--.+.
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVe---------ih~ahGyLl~qFlSp~~N~R~D~yG--GslenR~rf~~ei 208 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVE---------IHGANGYLIDQFLRDGSNKRTDEYG--GSIENRARFLLEV 208 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE---------EccccchhHHHhcCCccCCCCCcCC--CcHHHhhhHHHHH
Confidence 1 134778888766665443224343 335567877654 232100 01100 0122333334467
Q ss_pred HHHHHhhhcCCCCCeEEEEecCcccc
Q 014785 227 FSVYQRKYKDKQGGNIGLVVDCEWAE 252 (418)
Q Consensus 227 ~~~~r~~~~~~~~~~IG~~~~~~~~~ 252 (418)
++.+|+... .+ .||+-++...+.
T Consensus 209 i~air~~vg--~d-~v~vRis~~~~~ 231 (338)
T cd02933 209 VDAVAEAIG--AD-RVGIRLSPFGTF 231 (338)
T ss_pred HHHHHHHhC--CC-ceEEEECccccC
Confidence 777777531 33 589888765443
No 127
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=42.35 E-value=81 Score=29.78 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHHHHHHHHhC
Q 014785 117 ITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFG 175 (418)
Q Consensus 117 ~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~ 175 (418)
.+...+.|..|+++|+++++++.-+.....+ ....+++..+.|++-+..++++||
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~----~~~~~~~~~~~fa~~l~~~v~~yg 104 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGF----ANNLSDAAAKAYAKAIVDTVDKYG 104 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHhC
Confidence 4557789999999999999999755443221 012456667777777777777776
No 128
>PLN02389 biotin synthase
Probab=42.26 E-value=73 Score=32.53 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=42.8
Q ss_pred chHHHHHHHHHcCCCeeeecccccc-ccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 78 RYKEDIDLIAKLGFDAYRFSISWSR-IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~r-i~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
.-+|.++.||++|++.|-.+++=++ ++|.-.. .- .++..-+.++.+++.||++..++
T Consensus 176 l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~-~~---s~e~rl~ti~~a~~~Gi~v~sg~ 233 (379)
T PLN02389 176 LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVIT-TR---SYDDRLETLEAVREAGISVCSGG 233 (379)
T ss_pred CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCC-CC---CHHHHHHHHHHHHHcCCeEeEEE
Confidence 5689999999999999999885222 4444211 12 37778899999999999887665
No 129
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=41.98 E-value=1.9e+02 Score=28.84 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCeeEEEeccC---C--CchhhHhh-------------c--------C---CCCChHhHHHHHHHHHHH
Q 014785 120 YNNIIDALLQKGIQPYVTLYHW---D--LPLHLHES-------------M--------G---GWLNKEIVKYFEIYADTC 170 (418)
Q Consensus 120 y~~~i~~l~~~gi~p~~tL~h~---~--~P~~l~~~-------------~--------g---g~~~~~~~~~f~~ya~~~ 170 (418)
-..+|+.|+++|++.++.+.-+ + .|..-+.. + + -|+||+..+.|.+.-+.+
T Consensus 66 p~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 145 (339)
T cd06604 66 PKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKF 145 (339)
T ss_pred HHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHH
Confidence 4689999999999987654422 1 22221110 0 1 267899999988776665
Q ss_pred HHHhCCcceEEEEccCCcccc
Q 014785 171 FASFGDRVKNWITINEPLQTA 191 (418)
Q Consensus 171 ~~~~~d~v~~w~t~NEp~~~~ 191 (418)
. ..|= --+|+=+|||..+.
T Consensus 146 ~-~~Gv-dg~w~D~~Ep~~~~ 164 (339)
T cd06604 146 V-DLGV-DGIWNDMNEPAVFN 164 (339)
T ss_pred h-hCCC-ceEeecCCCccccC
Confidence 4 3332 24788899998653
No 130
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=41.76 E-value=60 Score=36.55 Aligned_cols=56 Identities=20% Similarity=0.257 Sum_probs=41.7
Q ss_pred ccchHHHHHHHHHcCCCeeeecccc---------------ccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 76 YHRYKEDIDLIAKLGFDAYRFSISW---------------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 76 y~~~~eDi~l~~~lG~~~~R~si~W---------------~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
+....+-++-+++||++++=+|=-+ .+|.|+- | +.+-+++++++|+++||.+|+.+
T Consensus 15 f~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l-G------t~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 15 FDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL-G------GEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC-C------CHHHHHHHHHHHHHCCCEEEEEe
Confidence 3446788999999999999766332 2333332 2 25568999999999999999985
No 131
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=41.61 E-value=19 Score=26.70 Aligned_cols=38 Identities=18% Similarity=0.453 Sum_probs=31.3
Q ss_pred ccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccC
Q 014785 101 SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW 141 (418)
Q Consensus 101 ~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~ 141 (418)
|++.|.. + .=..++++..-+++..|.++|| +.+.|++-
T Consensus 19 s~l~p~~-~-~d~~kaldiCaeIL~cLE~R~i-sWl~LFql 56 (64)
T PF03511_consen 19 SYLAPKE-G-ADSLKALDICAEILGCLEKRKI-SWLVLFQL 56 (64)
T ss_pred HhcCccc-c-cccHHHHHHHHHHHHHHHhCCC-cHHHhhhc
Confidence 5677886 5 5667899999999999999999 77777653
No 132
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=41.39 E-value=87 Score=31.85 Aligned_cols=58 Identities=24% Similarity=0.202 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccC-CCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~p~~-~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
++|++.+.+.|++.+|++++-|.+.-.. .+ .--++.++-..+.|..+++.|+++.++.
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~-~s~~~~l~~~~~~v~~a~~~G~~v~~~~ 136 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDIHIKHKLK-KTREEVLERMVEAVEYAKDHGLYVSFSA 136 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 7899999999999999999776653221 13 3346678899999999999999988764
No 133
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=41.34 E-value=1.1e+02 Score=30.87 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=55.2
Q ss_pred hHHHHHHHHHcCCCeeeeccc--cccccccCCCCccChhHHHHHHHHHHHHHHcCCeeE-EEeccCCCchhhHhhcCCCC
Q 014785 79 YKEDIDLIAKLGFDAYRFSIS--WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWL 155 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~--W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~-~tL~h~~~P~~l~~~~gg~~ 155 (418)
=++.+++|+++|++.+-+++. -.++...- +...+ .+-..+.|+.+++.|+..+ +.+ =+++|. .
T Consensus 99 ~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l-~r~~~---~~~~~~~i~~l~~~g~~~v~~dl-i~GlPg---------q 164 (377)
T PRK08599 99 TKEKLQVLKDSGVNRISLGVQTFNDELLKKI-GRTHN---EEDVYEAIANAKKAGFDNISIDL-IYALPG---------Q 164 (377)
T ss_pred CHHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCcEEEee-ecCCCC---------C
Confidence 368899999999997777763 22333221 21233 5667899999999999744 333 256664 2
Q ss_pred ChHhHHHHHHHHHHHHHHhCCcceEEEEccCCcccc
Q 014785 156 NKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTA 191 (418)
Q Consensus 156 ~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~ 191 (418)
+. +.|.+=.+.+.+.=-+.|..+...-+|....
T Consensus 165 t~---~~~~~~l~~~~~l~~~~i~~y~l~~~pgT~~ 197 (377)
T PRK08599 165 TI---EDFKESLAKALALDIPHYSAYSLILEPKTVF 197 (377)
T ss_pred CH---HHHHHHHHHHHccCCCEEeeeceeecCCChh
Confidence 33 3333444443332223455554445676543
No 134
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=40.60 E-value=77 Score=31.00 Aligned_cols=84 Identities=13% Similarity=0.111 Sum_probs=56.8
Q ss_pred HHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCC----chhhHhhcCCCCChH
Q 014785 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL----PLHLHESMGGWLNKE 158 (418)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~----P~~l~~~~gg~~~~~ 158 (418)
.+.+++.+-+--.++..|-.|-|++ .+.. ....++++.++++|+++++++..++- +.-+.. -..+++
T Consensus 16 ~~~~~~~~~~lt~v~p~w~~~~~~g---~~~~---~~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~---~l~~~~ 86 (313)
T cd02874 16 YESLRANAPYLTYIAPFWYGVDADG---TLTG---LPDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA---VLSNPE 86 (313)
T ss_pred HHHHHHhcCCCCEEEEEEEEEcCCC---CCCC---CCCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH---HhcCHH
Confidence 6677777777777888899997765 3332 22468999999999999999976541 111111 124566
Q ss_pred hHHHHHHHHHHHHHHhC
Q 014785 159 IVKYFEIYADTCFASFG 175 (418)
Q Consensus 159 ~~~~f~~ya~~~~~~~~ 175 (418)
..+.|++=+-.++++||
T Consensus 87 ~r~~fi~~iv~~l~~~~ 103 (313)
T cd02874 87 ARQRLINNILALAKKYG 103 (313)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 77777777777777775
No 135
>PRK12568 glycogen branching enzyme; Provisional
Probab=40.55 E-value=59 Score=36.12 Aligned_cols=94 Identities=21% Similarity=0.326 Sum_probs=58.0
Q ss_pred ccchHHH-HHHHHHcCCCeeeec-c-------cccc-----ccccCC-CCccChhHHHHHHHHHHHHHHcCCeeEEEec-
Q 014785 76 YHRYKED-IDLIAKLGFDAYRFS-I-------SWSR-----IFPDGL-GTKINMEGITFYNNIIDALLQKGIQPYVTLY- 139 (418)
Q Consensus 76 y~~~~eD-i~l~~~lG~~~~R~s-i-------~W~r-----i~p~~~-g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~- 139 (418)
|.-..+. |+-+|+||++++-+. | +|-= .-|++. | . .+-++.+|++|+++||.+|+.+.
T Consensus 268 ~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G-~-----~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 268 WPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHG-S-----PDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccC-C-----HHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444444 699999999998765 2 3410 111110 3 2 45589999999999999999864
Q ss_pred -cCCCc-----------hhhH-hh----cCC-------CCChHhHHHHHHHHHHHHHHhC
Q 014785 140 -HWDLP-----------LHLH-ES----MGG-------WLNKEIVKYFEIYADTCFASFG 175 (418)
Q Consensus 140 -h~~~P-----------~~l~-~~----~gg-------~~~~~~~~~f~~ya~~~~~~~~ 175 (418)
|+..- .+-. +. +.. +.++++.+.+.+=+..-+++|+
T Consensus 342 nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 342 AHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred ccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC
Confidence 43211 1100 00 012 3457788888888888888885
No 136
>PLN02960 alpha-amylase
Probab=40.17 E-value=56 Score=36.95 Aligned_cols=95 Identities=9% Similarity=0.266 Sum_probs=59.7
Q ss_pred ccccchHHH-HHHHHHcCCCeeeec-cc-------cc-------cccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEE
Q 014785 74 DHYHRYKED-IDLIAKLGFDAYRFS-IS-------WS-------RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (418)
Q Consensus 74 d~y~~~~eD-i~l~~~lG~~~~R~s-i~-------W~-------ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~t 137 (418)
..|.-..+. |+.+|+||++++-+. |. |- .+.|.= | . .+=++.+|++|+++||.+|+.
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~y-G-t-----p~dfk~LVd~aH~~GI~VILD 485 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRF-G-T-----PDDFKRLVDEAHGLGLLVFLD 485 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCccccc-C-C-----HHHHHHHHHHHHHCCCEEEEE
Confidence 456666545 999999999998876 21 21 111110 2 2 345889999999999999998
Q ss_pred ec--cCCC--ch-----------hhHh--h--cCCC-------CChHhHHHHHHHHHHHHHHhC
Q 014785 138 LY--HWDL--PL-----------HLHE--S--MGGW-------LNKEIVKYFEIYADTCFASFG 175 (418)
Q Consensus 138 L~--h~~~--P~-----------~l~~--~--~gg~-------~~~~~~~~f~~ya~~~~~~~~ 175 (418)
+- |+.. +. ++.. . +..| .++++.+.+.+=++.-+++|+
T Consensus 486 vV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 486 IVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred ecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 73 4321 11 1110 0 0112 346788888888888888885
No 137
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=39.89 E-value=72 Score=35.29 Aligned_cols=56 Identities=20% Similarity=0.320 Sum_probs=36.6
Q ss_pred HHHHHHcCCCeeeec-c-cccc--------------ccccCCCCccCh-----hHHHHHHHHHHHHHHcCCeeEEEec
Q 014785 83 IDLIAKLGFDAYRFS-I-SWSR--------------IFPDGLGTKINM-----EGITFYNNIIDALLQKGIQPYVTLY 139 (418)
Q Consensus 83 i~l~~~lG~~~~R~s-i-~W~r--------------i~p~~~g~~~n~-----~~~~~y~~~i~~l~~~gi~p~~tL~ 139 (418)
|+-||+||++++=+. | +... --|..- ..++. ..++-++++|++|+++||++|+.+-
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y-~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV 266 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGF-FAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVV 266 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccc-cccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEEC
Confidence 899999999999876 2 2210 001000 01111 1256699999999999999999854
No 138
>PRK12677 xylose isomerase; Provisional
Probab=39.81 E-value=2.7e+02 Score=28.43 Aligned_cols=71 Identities=20% Similarity=0.219 Sum_probs=45.5
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeE-EEeccCCCchhhHhhcCCCCCh
Q 014785 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWLNK 157 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~-~tL~h~~~P~~l~~~~gg~~~~ 157 (418)
..|-++.++++|++++=+.. ..+.|-. - ...+. -...+++-..+.+.||++. +|...|..|.+ +.|++.++
T Consensus 33 ~~E~v~~~a~~Gf~gVElh~--~~l~p~~-~-~~~~~-~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~---~~g~lts~ 104 (384)
T PRK12677 33 PVEAVHKLAELGAYGVTFHD--DDLVPFG-A-TDAER-DRIIKRFKKALDETGLVVPMVTTNLFTHPVF---KDGAFTSN 104 (384)
T ss_pred HHHHHHHHHHhCCCEEEecc--cccCCCC-C-Chhhh-HHHHHHHHHHHHHcCCeeEEEecCCCCCccc---cCCcCCCC
Confidence 57889999999999886632 2244432 1 11111 1346788888899999966 55555555654 23788774
No 139
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=39.59 E-value=22 Score=34.49 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHCCCCCEEEecCCCCCCCchhHHH
Q 014785 368 WGLRKVLNYIAKTYNNPPIYVTENGMCINFSVEVII 403 (418)
Q Consensus 368 ~GL~~~L~~i~~rY~~ppI~ITENG~~~~d~~~~~~ 403 (418)
-||-.++.. .+|+.| ++|||.|+=..++...+.
T Consensus 184 Agl~g~~~k--~~~g~P-~lLTEHGIY~RER~~ei~ 216 (268)
T PF11997_consen 184 AGLLGALAK--YRYGRP-FLLTEHGIYTREREIEIL 216 (268)
T ss_pred HHHHHHHHH--HHhCCC-EEEecCCccHHHHHHHHH
Confidence 577766644 467777 999999998777666554
No 140
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=39.48 E-value=1.3e+02 Score=30.99 Aligned_cols=88 Identities=15% Similarity=0.199 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCCCeeeecc--ccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeE-EEeccCCCchh--hHhhcCCC
Q 014785 80 KEDIDLIAKLGFDAYRFSI--SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLH--LHESMGGW 154 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si--~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~-~tL~h~~~P~~--l~~~~gg~ 154 (418)
-+|++.+.++.--..|+++ .|. .+|.+.++ +.++++||..- ++..-|..|+- -.-++|..
T Consensus 73 i~D~~~v~~Lt~~~~~v~LH~~wd---------~vD~~elk------~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSL 137 (412)
T TIGR02629 73 LEDCAVIQQLTRATPNVSLHIPWD---------KADPKELK------ARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSL 137 (412)
T ss_pred HHHHHHHHhhcCCCCCccccCCCC---------cCCHHHHH------HHHHHcCCccceeccccccCccccccccccccc
Confidence 6888988888877777774 781 24644444 88999999988 76666766632 11134777
Q ss_pred CCh--HhHHHHHHHHHHHH---HHhCCc-ceEEE
Q 014785 155 LNK--EIVKYFEIYADTCF---ASFGDR-VKNWI 182 (418)
Q Consensus 155 ~~~--~~~~~f~~ya~~~~---~~~~d~-v~~w~ 182 (418)
+|| ++.+...+.+..|. +..|.+ |+.|+
T Consensus 138 tnPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~ 171 (412)
T TIGR02629 138 SHTDAATRRQAVEHNLECIEIGKALGSKALTVWI 171 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEEC
Confidence 775 46666667666655 667664 55554
No 141
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=39.11 E-value=1.9e+02 Score=25.38 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=38.6
Q ss_pred hHHHHHHHHHcCCCeeeeccc-ccccccc-CCCCccChhHHHHHHHHHHHHHHcC-CeeEEEe
Q 014785 79 YKEDIDLIAKLGFDAYRFSIS-WSRIFPD-GLGTKINMEGITFYNNIIDALLQKG-IQPYVTL 138 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~-W~ri~p~-~~g~~~n~~~~~~y~~~i~~l~~~g-i~p~~tL 138 (418)
-++.++.|+++|++.+.+|+. ++.-.-+ -.. ..+ ++.+.+.|..+++.| +.+-+.+
T Consensus 99 ~~~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~-~~~---~~~~~~~i~~~~~~g~~~v~~~~ 157 (216)
T smart00729 99 TEELLEALKEAGVNRVSLGVQSGSDEVLKAINR-GHT---VEDVLEAVEKLREAGPIKVSTDL 157 (216)
T ss_pred CHHHHHHHHHcCCCeEEEecccCCHHHHHHhcC-CCC---HHHHHHHHHHHHHhCCcceEEeE
Confidence 368899999999999999985 5432111 101 222 578889999999999 5554433
No 142
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=39.10 E-value=1.6e+02 Score=29.80 Aligned_cols=72 Identities=25% Similarity=0.206 Sum_probs=53.5
Q ss_pred HHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHH
Q 014785 87 AKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIY 166 (418)
Q Consensus 87 ~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~y 166 (418)
.+.|+..+| |-| | .+-. --+..+.+++.++++|+..=+..+|-.++.-+.++||+-+....++.-.++
T Consensus 98 ~~~G~~~iR-------INP---G-Nig~-~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~ 165 (360)
T PRK00366 98 AEAGADALR-------INP---G-NIGK-RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRH 165 (360)
T ss_pred HHhCCCEEE-------ECC---C-CCCc-hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHH
Confidence 367899985 434 5 4421 035788999999999999999999999999999998653444566666666
Q ss_pred HHHH
Q 014785 167 ADTC 170 (418)
Q Consensus 167 a~~~ 170 (418)
++.+
T Consensus 166 ~~~l 169 (360)
T PRK00366 166 AKIL 169 (360)
T ss_pred HHHH
Confidence 6654
No 143
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=39.09 E-value=1.2e+02 Score=31.79 Aligned_cols=92 Identities=12% Similarity=0.006 Sum_probs=58.3
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc----hhhHh---h--
Q 014785 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP----LHLHE---S-- 150 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P----~~l~~---~-- 150 (418)
++|++...+.|++.+|+.++-+.+ .-....|+.+++.|+.+.+++..-+.| ..+.+ +
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~ 164 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDV--------------RNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQ 164 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHH
Confidence 566799999999999999865433 125568899999999988887765556 22111 1
Q ss_pred -----------cCCCCChHhHHHHHHHHHHHHHHhCCcceEEEEccCCcc
Q 014785 151 -----------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (418)
Q Consensus 151 -----------~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 189 (418)
-.|..+|.-+ .+.++.+-++++ ..-.+.+-|-..+
T Consensus 165 ~~Gad~I~i~Dt~G~l~P~~v---~~lv~alk~~~~-~pi~~H~Hnt~Gl 210 (448)
T PRK12331 165 EMGADSICIKDMAGILTPYVA---YELVKRIKEAVT-VPLEVHTHATSGI 210 (448)
T ss_pred HcCCCEEEEcCCCCCCCHHHH---HHHHHHHHHhcC-CeEEEEecCCCCc
Confidence 1456665433 345555556664 2234556665554
No 144
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=39.05 E-value=2.9e+02 Score=27.64 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEec--cCCCchhh
Q 014785 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY--HWDLPLHL 147 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~--h~~~P~~l 147 (418)
.+|++...+.|++.+|+....+.. +-..+.|..+++.|++..+++. |...|..+
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~--------------d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l 145 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA--------------DVSEQHIGMARELGMDTVGFLMMSHMTPPEKL 145 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH--------------HHHHHHHHHHHHcCCeEEEEEEcccCCCHHHH
Confidence 689999999999999988753322 2246889999999999988773 44445544
No 145
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=38.53 E-value=91 Score=31.51 Aligned_cols=58 Identities=22% Similarity=0.196 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccC-CCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~p~~-~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
.+|++.+.+.|++.+|+.++-|.+.-.. .+ .=.++.++...+.|..+++.|+++.++.
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~-~s~~e~l~~~~~~i~~ak~~g~~v~~~~ 133 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDLQIEAKLR-KDRAWVLERLARLVSFARDRGLFVSVGG 133 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHHHHHHHhC-cCHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 7999999999999999999877543322 12 2235568889999999999999877654
No 146
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=38.18 E-value=1.1e+02 Score=30.01 Aligned_cols=62 Identities=23% Similarity=0.235 Sum_probs=45.3
Q ss_pred hHHHHHHHHHcCCCeeeecc----ccccccccC---CCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhH
Q 014785 79 YKEDIDLIAKLGFDAYRFSI----SWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH 148 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si----~W~ri~p~~---~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~ 148 (418)
.++-|++|+.+|+|.+-+=+ .++. .|.- .| .+.++. ++++++.++++||++|..+ |+|..+.
T Consensus 19 lk~~id~ma~~k~N~l~lhl~D~f~~~~-~p~~~~~~~-~yT~~e---i~ei~~yA~~~gI~vIPei---d~pGH~~ 87 (301)
T cd06565 19 LKKLLRLLALLGANGLLLYYEDTFPYEG-EPEVGRMRG-AYTKEE---IREIDDYAAELGIEVIPLI---QTLGHLE 87 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEEecceecCC-CcccccCCC-CcCHHH---HHHHHHHHHHcCCEEEecC---CCHHHHH
Confidence 67889999999999887633 3322 2221 25 677544 7799999999999999887 6676654
No 147
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=37.92 E-value=2.6e+02 Score=26.66 Aligned_cols=46 Identities=22% Similarity=0.284 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEec
Q 014785 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 139 (418)
.+|++..++.|++.+|+.++-+.+ .-..++++.+++.|+++.+++.
T Consensus 88 ~~~i~~a~~~g~~~iri~~~~s~~--------------~~~~~~i~~ak~~G~~v~~~~~ 133 (263)
T cd07943 88 VDDLKMAADLGVDVVRVATHCTEA--------------DVSEQHIGAARKLGMDVVGFLM 133 (263)
T ss_pred HHHHHHHHHcCCCEEEEEechhhH--------------HHHHHHHHHHHHCCCeEEEEEE
Confidence 699999999999999998765533 2246788899999999988883
No 148
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=37.44 E-value=2.2e+02 Score=28.14 Aligned_cols=106 Identities=17% Similarity=0.200 Sum_probs=62.0
Q ss_pred HHHHHHHHcCCC--eeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCC-----chhhHhh---
Q 014785 81 EDIDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL-----PLHLHES--- 150 (418)
Q Consensus 81 eDi~l~~~lG~~--~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~-----P~~l~~~--- 150 (418)
+-++.+++.++. ++=+.+.|..- .+ .-.+|++-+---.++|+.|+++|++.++.+.-+-. |......
T Consensus 28 ~~~~~~~~~~iP~d~i~lD~~~~~~--~~-~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~ 104 (317)
T cd06600 28 EVVDIMQKEGFPYDVVFLDIHYMDS--YR-LFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKG 104 (317)
T ss_pred HHHHHHHHcCCCcceEEEChhhhCC--CC-ceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCC
Confidence 334555555443 34444445321 11 11344444444668999999999998877653321 2221100
Q ss_pred ----------c------C-----CCCChHhHHHHHHHHHHHHHHhCCcceEEEEccCCccc
Q 014785 151 ----------M------G-----GWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (418)
Q Consensus 151 ----------~------g-----g~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~ 190 (418)
+ | -|+||+..+.|.+..+.+....|-. -+|+=+|||..+
T Consensus 105 ~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvd-g~w~D~~Ep~~~ 164 (317)
T cd06600 105 KFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVD-GIWLDMNEPSDF 164 (317)
T ss_pred EEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCc-eEEeeCCCCccH
Confidence 0 1 1689999999998888776555533 478899998643
No 149
>PRK05474 xylose isomerase; Provisional
Probab=36.45 E-value=5.1e+02 Score=26.95 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=78.2
Q ss_pred HHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHH----HHHHcCCeeE-EEeccCCCchhhHhhcCCCCCh
Q 014785 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIID----ALLQKGIQPY-VTLYHWDLPLHLHESMGGWLNK 157 (418)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~----~l~~~gi~p~-~tL~h~~~P~~l~~~~gg~~~~ 157 (418)
++.+.+||+..|-|- =..|.|++ . ...+ ..+..+.+++ .+.+.||+.. +|..-|..|.+.. |+++||
T Consensus 85 fe~~~kLg~~~~~FH--D~D~~peg-~-s~~E-~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~Tnp 156 (437)
T PRK05474 85 FEFFTKLGVPYYCFH--DVDVAPEG-A-SLKE-YNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMA---GAATNP 156 (437)
T ss_pred HHHHHHhCCCeeccC--ccccCCCC-C-CHHH-HHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccC---CcCCCC
Confidence 677999999988765 23477876 2 3332 2233445544 4556799865 4667789998753 899886
Q ss_pred H--hHHHHHHHHHH---HHHHhCCc-ceEEEEccCCccccccCccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 014785 158 E--IVKYFEIYADT---CFASFGDR-VKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQ 231 (418)
Q Consensus 158 ~--~~~~f~~ya~~---~~~~~~d~-v~~w~t~NEp~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~n~l~Aha~a~~~~r 231 (418)
+ +...=++-++. +.+++|.. +.+|- ...||.. + ..+......-|+..+-..+++..+
T Consensus 157 d~~Vra~A~~qvk~alD~~~eLGge~yV~Wg--------GREGye~----~-----~ntD~~~e~d~~~~~l~~v~dYa~ 219 (437)
T PRK05474 157 DPDVFAYAAAQVKTALDATKRLGGENYVFWG--------GREGYET----L-----LNTDLKREREQLARFLQMVVDYKH 219 (437)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEECC--------Ccccccc----h-----hhcCHHHHHHHHHHHHHHHHHHhh
Confidence 4 33333333333 34667753 22221 1122221 1 122333455566666666666666
Q ss_pred hhhcCCCCCeEEEEecCcccccCC
Q 014785 232 RKYKDKQGGNIGLVVDCEWAEANS 255 (418)
Q Consensus 232 ~~~~~~~~~~IG~~~~~~~~~P~~ 255 (418)
++. .++++. +-.-|..|..
T Consensus 220 ~iG---f~~~f~--IEPKP~EPr~ 238 (437)
T PRK05474 220 KIG---FKGTFL--IEPKPQEPTK 238 (437)
T ss_pred hcC---CCceEE--eccCCCCCCC
Confidence 643 455554 4455666644
No 150
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=36.17 E-value=1.3e+02 Score=31.14 Aligned_cols=61 Identities=11% Similarity=0.202 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCCeeeeccc-c-ccccccCCCCccChhHHHHHHHHHHHHHHcCCeeE-EEeccCCCch
Q 014785 80 KEDIDLIAKLGFDAYRFSIS-W-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPL 145 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~-W-~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~-~tL~h~~~P~ 145 (418)
++.+++|+++|++.+.+++. = .++...- |...+ .+-..+.|+.|++.|+..+ ++|. +++|.
T Consensus 141 ~e~l~~l~~~G~~rvslGvQS~~~~~L~~l-~R~~~---~~~~~~ai~~l~~~g~~~i~~dlI-~GlP~ 204 (430)
T PRK08208 141 AEKLALLAARGVNRLSIGVQSFHDSELHAL-HRPQK---RADVHQALEWIRAAGFPILNIDLI-YGIPG 204 (430)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC
Confidence 68899999999997777662 2 1222221 31223 4567789999999999864 4553 46664
No 151
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=35.73 E-value=1.2e+02 Score=32.95 Aligned_cols=92 Identities=14% Similarity=0.064 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc----hhhHhh-----
Q 014785 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP----LHLHES----- 150 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P----~~l~~~----- 150 (418)
++|++++++.|++.+|+..+.+.+ +-....|+.++++|+.+.+++.+-+.| ..+.+.
T Consensus 94 ~~~v~~a~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~ 159 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELL 159 (582)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHH
Confidence 456899999999999998765433 225567788888999888887765555 222110
Q ss_pred -----------cCCCCChHhHHHHHHHHHHHHHHhCCcceEEEEccCCcc
Q 014785 151 -----------MGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (418)
Q Consensus 151 -----------~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 189 (418)
-.|...|.. ..+.++.+.++++ ..-...+-|-..+
T Consensus 160 ~~Gad~I~i~Dt~G~~~P~~---v~~lv~~lk~~~~-~pi~~H~Hnt~Gl 205 (582)
T TIGR01108 160 EMGVDSICIKDMAGILTPKA---AYELVSALKKRFG-LPVHLHSHATTGM 205 (582)
T ss_pred HcCCCEEEECCCCCCcCHHH---HHHHHHHHHHhCC-CceEEEecCCCCc
Confidence 145566544 4455566666775 2235677777665
No 152
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=35.70 E-value=46 Score=24.36 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=26.1
Q ss_pred HHHHHHHHH-cCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHH
Q 014785 121 NNIIDALLQ-KGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYA 167 (418)
Q Consensus 121 ~~~i~~l~~-~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya 167 (418)
+++++.|.+ .||+|.+|. ..|-.- -+++.+.|..|-
T Consensus 19 ~E~v~~L~~~a~I~P~~T~-----~VW~~L------ekeN~eFF~aY~ 55 (57)
T TIGR01589 19 EETVSFLFENAGISPKFTR-----FVWYLL------EKENADFFRCYK 55 (57)
T ss_pred HHHHHHHHHHcCCCchhHH-----HHHHHH------HHHHHHHHHHHh
Confidence 577777766 899999887 467543 366778888774
No 153
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=35.65 E-value=2.7e+02 Score=24.91 Aligned_cols=50 Identities=14% Similarity=0.398 Sum_probs=28.2
Q ss_pred HHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 014785 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (418)
Q Consensus 82 Di~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P 144 (418)
|.+.+|+.|++..=+=+. +|.+ ..| ..|..-++.++++|| .+.+|||-.|
T Consensus 13 d~~~~k~~gi~fviiKat------eG~~-y~D----~~~~~~~~~a~~aGl--~~G~Yhy~~~ 62 (184)
T cd06525 13 NFNAVKDSGVEVVYIKAT------EGTT-FVD----SYFNENYNGAKAAGL--KVGFYHFLVG 62 (184)
T ss_pred CHHHHHhCCCeEEEEEec------CCCc-ccC----HhHHHHHHHHHHCCC--ceEEEEEeeC
Confidence 566667666553322221 2322 345 456677777777777 3577776654
No 154
>PRK07094 biotin synthase; Provisional
Probab=35.25 E-value=1.3e+02 Score=29.59 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=40.0
Q ss_pred chHHHHHHHHHcCCCeeeeccc-c-ccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 78 RYKEDIDLIAKLGFDAYRFSIS-W-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~-W-~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
.-+++++.|+++|++.+-++++ - .++...-.. ..+ ++-+.+.|+.+++.||.+..++
T Consensus 127 ~~~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~-~~s---~~~~~~~i~~l~~~Gi~v~~~~ 185 (323)
T PRK07094 127 RSYEEYKAWKEAGADRYLLRHETADKELYAKLHP-GMS---FENRIACLKDLKELGYEVGSGF 185 (323)
T ss_pred CCHHHHHHHHHcCCCEEEeccccCCHHHHHHhCC-CCC---HHHHHHHHHHHHHcCCeecceE
Confidence 3478999999999999998884 2 233332101 122 5678889999999999765444
No 155
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=34.99 E-value=77 Score=29.39 Aligned_cols=44 Identities=20% Similarity=0.414 Sum_probs=29.0
Q ss_pred cchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCC
Q 014785 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGI 132 (418)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi 132 (418)
-.-+.-++||++||.+++.| +|-+ | .-. ++-|..+-.+|.++|+
T Consensus 135 V~vetAiaml~dmG~~SiKf-------fPm~-G-l~~---leE~~avAkA~a~~g~ 178 (218)
T PF07071_consen 135 VPVETAIAMLKDMGGSSIKF-------FPMG-G-LKH---LEELKAVAKACARNGF 178 (218)
T ss_dssp EEHHHHHHHHHHTT--EEEE----------T-T-TTT---HHHHHHHHHHHHHCT-
T ss_pred ccHHHHHHHHHHcCCCeeeE-------eecC-C-ccc---HHHHHHHHHHHHHcCc
Confidence 34567799999999999986 5776 6 222 6667788888888887
No 156
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=34.72 E-value=2e+02 Score=28.77 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCCeeeecc-ccc-cccccCCCCccChhHHHHHHHHHHHHHHcCCeeE-EEeccCCCchhhHhhcCCCCC
Q 014785 80 KEDIDLIAKLGFDAYRFSI-SWS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWLN 156 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si-~W~-ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~-~tL~h~~~P~~l~~~~gg~~~ 156 (418)
++.+++|+++|+|-+-++| +-+ ++...- |...+ .+-..+.|+.+++.|+..+ +.|. +++|.
T Consensus 98 ~e~l~~l~~~GvnRiSiGvQS~~~~~L~~l-gR~~~---~~~~~~ai~~lr~~g~~~v~iDli-~GlPg----------- 161 (350)
T PRK08446 98 KAWLKGMKNLGVNRISFGVQSFNEDKLKFL-GRIHS---QKQIIKAIENAKKAGFENISIDLI-YDTPL----------- 161 (350)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCEEEEEee-cCCCC-----------
Confidence 6889999999999777776 332 222221 31223 5567789999999999855 5554 56664
Q ss_pred hHhHHHHHHHHHHHHHHhCCcceEEEEccCCcc
Q 014785 157 KEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (418)
Q Consensus 157 ~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 189 (418)
++.+.|.+-.+.+.+-=-++|..+...=||+.
T Consensus 162 -qt~~~~~~~l~~~~~l~~~~is~y~L~~~~gT 193 (350)
T PRK08446 162 -DNKKLLKEELKLAKELPINHLSAYSLTIEENT 193 (350)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEeccceecCCC
Confidence 22344444445544322344555544445543
No 157
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=34.59 E-value=73 Score=33.20 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccC---CCCccChhHHHHHHHHHHHHHHcCCe-eEEEeccCCCch
Q 014785 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPL 145 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~p~~---~g~~~n~~~~~~y~~~i~~l~~~gi~-p~~tL~h~~~P~ 145 (418)
++.+++|+++|++.+-+++. ..-|+- -+...+ .+-..+.|+.+++.|+. .-++|. +++|.
T Consensus 152 ~e~l~~L~~~G~~rvsiGvQ--S~~~~vl~~l~R~~~---~~~~~~ai~~lr~~G~~~v~~dli-~GlPg 215 (453)
T PRK13347 152 AEMLQALAALGFNRASFGVQ--DFDPQVQKAINRIQP---EEMVARAVELLRAAGFESINFDLI-YGLPH 215 (453)
T ss_pred HHHHHHHHHcCCCEEEECCC--CCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-EeCCC
Confidence 68899999999996666652 222211 020223 56677899999999997 344553 45564
No 158
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=34.01 E-value=68 Score=33.21 Aligned_cols=59 Identities=22% Similarity=0.360 Sum_probs=39.0
Q ss_pred HHHHHHHHcCCCeeeec-c-----ccccccccCCCCccC--hhHHHHHHHHHHHHHHcCCeeEEEe--cc
Q 014785 81 EDIDLIAKLGFDAYRFS-I-----SWSRIFPDGLGTKIN--MEGITFYNNIIDALLQKGIQPYVTL--YH 140 (418)
Q Consensus 81 eDi~l~~~lG~~~~R~s-i-----~W~ri~p~~~g~~~n--~~~~~~y~~~i~~l~~~gi~p~~tL--~h 140 (418)
+=++.+++||++++=++ | ++.+--...-- .+| .-.++-.+++|++++++||+.++.+ .|
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~-~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH 101 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYT-KVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNH 101 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchh-hcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCc
Confidence 66899999999999554 1 11111111000 121 2236788999999999999999987 56
No 159
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=33.44 E-value=1.5e+02 Score=29.63 Aligned_cols=64 Identities=22% Similarity=0.391 Sum_probs=45.3
Q ss_pred chHHHHHHHHHcCCCeeeeccc----c-------ccccccC---------CCCccChhHHHHHHHHHHHHHHcCCeeEEE
Q 014785 78 RYKEDIDLIAKLGFDAYRFSIS----W-------SRIFPDG---------LGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (418)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~----W-------~ri~p~~---------~g~~~n~~~~~~y~~~i~~l~~~gi~p~~t 137 (418)
..++-|+.|+..++|.+.+-++ | +.+-..+ .| .+.+ +=++++++.++++||++|.-
T Consensus 19 ~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~-~YT~---~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 19 EVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGG-YYTQ---EDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred HHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCC-cCCH---HHHHHHHHHHHHcCCEEEEe
Confidence 3677899999999998876662 3 3332111 02 3553 44789999999999999988
Q ss_pred eccCCCchhhH
Q 014785 138 LYHWDLPLHLH 148 (418)
Q Consensus 138 L~h~~~P~~l~ 148 (418)
+ |+|....
T Consensus 95 i---D~PGH~~ 102 (329)
T cd06568 95 I---DMPGHTN 102 (329)
T ss_pred c---CCcHHHH
Confidence 7 7887654
No 160
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=33.33 E-value=1.4e+02 Score=29.57 Aligned_cols=63 Identities=14% Similarity=0.323 Sum_probs=45.3
Q ss_pred hHHHHHHHHHcCCCeeeecc----cccc---ccccCC--C---CccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchh
Q 014785 79 YKEDIDLIAKLGFDAYRFSI----SWSR---IFPDGL--G---TKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLH 146 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si----~W~r---i~p~~~--g---~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~ 146 (418)
.++=|+.|+..++|.+.+-+ +|.- -.|+-+ | ..+.+ +-++++++-++++||++|.-+ |+|..
T Consensus 20 ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~---~di~elv~yA~~rgI~vIPEI---d~PGH 93 (311)
T cd06570 20 IKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQ---EQIREVVAYARDRGIRVVPEI---DVPGH 93 (311)
T ss_pred HHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCH---HHHHHHHHHHHHcCCEEEEee---cCccc
Confidence 56678999999999887765 5632 233310 1 14664 447899999999999999887 77865
Q ss_pred h
Q 014785 147 L 147 (418)
Q Consensus 147 l 147 (418)
.
T Consensus 94 ~ 94 (311)
T cd06570 94 A 94 (311)
T ss_pred h
Confidence 4
No 161
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=33.04 E-value=5.1e+02 Score=25.88 Aligned_cols=135 Identities=13% Similarity=0.030 Sum_probs=75.2
Q ss_pred ccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCC---------chhhHhhcC-----CCCC---hHhHHHHHH
Q 014785 103 IFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---------PLHLHESMG-----GWLN---KEIVKYFEI 165 (418)
Q Consensus 103 i~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~---------P~~l~~~~g-----g~~~---~~~~~~f~~ 165 (418)
..|...+ -.+++-+..++++++.++++|-+.++=|.|... |........ ..+. .++++.|++
T Consensus 63 ~~~~~~~-~~~~~~i~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~ 141 (353)
T cd02930 63 LGPGGPV-LNSPRQAAGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFAR 141 (353)
T ss_pred CCCCCcc-cCCHHHHHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 3343235 678888999999999999999999999999543 110000000 1111 346777777
Q ss_pred HHHHHHHHhCCcceEEEEccCCccccccCccccccC-CCCCC-CCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEE
Q 014785 166 YADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFA-PGRHQ-HSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNIG 243 (418)
Q Consensus 166 ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~~-P~~~~-~~~~~~~~~~~n~l~Aha~a~~~~r~~~~~~~~~~IG 243 (418)
=|+.+.+.==|-|. +.+-.||+...|- |.... .+.-- -.+-|-+.--...++.+|+.. .++..|+
T Consensus 142 aA~~a~~aGfDgVe---------ih~ahGyLl~qFlsp~~N~RtD~yG--GslenR~r~~~eiv~aIR~~v--G~d~~v~ 208 (353)
T cd02930 142 CAALAREAGYDGVE---------IMGSEGYLINQFLAPRTNKRTDEWG--GSFENRMRFPVEIVRAVRAAV--GEDFIII 208 (353)
T ss_pred HHHHHHHcCCCEEE---------EecccchHHHHhcCCccCCCcCccC--CCHHHHhHHHHHHHHHHHHHc--CCCceEE
Confidence 66665443224444 2355678776543 32100 01100 012233333346677777754 2466788
Q ss_pred EEecCccc
Q 014785 244 LVVDCEWA 251 (418)
Q Consensus 244 ~~~~~~~~ 251 (418)
+-++...+
T Consensus 209 iRi~~~D~ 216 (353)
T cd02930 209 YRLSMLDL 216 (353)
T ss_pred EEeccccc
Confidence 88775443
No 162
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=32.94 E-value=36 Score=24.64 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=25.0
Q ss_pred HHHHHHHH-HcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHH
Q 014785 121 NNIIDALL-QKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYA 167 (418)
Q Consensus 121 ~~~i~~l~-~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya 167 (418)
+++++.|. ..+|.|.+|. ..|-.- .+++.+.|..|-
T Consensus 16 ~E~v~~L~~~a~I~P~~T~-----~VW~~L------e~eN~eFF~aY~ 52 (54)
T PF09713_consen 16 EECVRALQKQANIEPVFTS-----TVWQKL------EKENPEFFKAYY 52 (54)
T ss_pred HHHHHHHHHHcCCChHHHH-----HHHHHH------HHHCHHHHHHhh
Confidence 57888885 5699999887 467442 255667777763
No 163
>PRK09936 hypothetical protein; Provisional
Probab=32.33 E-value=4.2e+02 Score=26.07 Aligned_cols=62 Identities=23% Similarity=0.372 Sum_probs=45.2
Q ss_pred chHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhH
Q 014785 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH 148 (418)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~ 148 (418)
.|++=++.++.+|++++ =+.|++.--...| .- =.+..+.++...+.||+.+|.|+ +| |.|.+
T Consensus 39 qWq~~~~~~~~~G~~tL--ivQWt~yG~~~fg-~~----~g~La~~l~~A~~~Gl~v~vGL~-~D-p~y~q 100 (296)
T PRK09936 39 QWQGLWSQLRLQGFDTL--VVQWTRYGDADFG-GQ----RGWLAKRLAAAQQAGLKLVVGLY-AD-PEFFM 100 (296)
T ss_pred HHHHHHHHHHHcCCcEE--EEEeeeccCCCcc-cc----hHHHHHHHHHHHHcCCEEEEccc-CC-hHHHH
Confidence 35666899999999986 4589888211112 22 25788999999999999999997 44 55554
No 164
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=32.25 E-value=97 Score=29.85 Aligned_cols=67 Identities=12% Similarity=0.052 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHh
Q 014785 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEI 159 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~ 159 (418)
.+|++...+.|++.+|+++..+ .++-..++++.+++.|+++.+++.+-. + ..
T Consensus 85 ~~~l~~a~~~gv~~iri~~~~~--------------~~~~~~~~i~~ak~~G~~v~~~~~~a~----------~----~~ 136 (266)
T cd07944 85 IDLLEPASGSVVDMIRVAFHKH--------------EFDEALPLIKAIKEKGYEVFFNLMAIS----------G----YS 136 (266)
T ss_pred HHHHHHHhcCCcCEEEEecccc--------------cHHHHHHHHHHHHHCCCeEEEEEEeec----------C----CC
Confidence 5889999999999999987432 266788999999999999999886421 1 12
Q ss_pred HHHHHHHHHHHHHHhC
Q 014785 160 VKYFEIYADTCFASFG 175 (418)
Q Consensus 160 ~~~f~~ya~~~~~~~~ 175 (418)
.+.+.++++.+.+ +|
T Consensus 137 ~~~~~~~~~~~~~-~g 151 (266)
T cd07944 137 DEELLELLELVNE-IK 151 (266)
T ss_pred HHHHHHHHHHHHh-CC
Confidence 5666777777644 44
No 165
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.12 E-value=1.6e+02 Score=29.15 Aligned_cols=110 Identities=16% Similarity=0.120 Sum_probs=61.0
Q ss_pred HHHHHHHHHcCCC--eeeeccccccccccCC-CCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCC---chhhHhh---
Q 014785 80 KEDIDLIAKLGFD--AYRFSISWSRIFPDGL-GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL---PLHLHES--- 150 (418)
Q Consensus 80 ~eDi~l~~~lG~~--~~R~si~W~ri~p~~~-g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~---P~~l~~~--- 150 (418)
.+-++.+++.|+. ++=+.+.|....-... .-.+|.+.+---++||++|+++|++.++.+.-+-. |..-+..
T Consensus 32 ~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g 111 (317)
T cd06599 32 LEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAG 111 (317)
T ss_pred HHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCC
Confidence 3445555665553 3333334543210000 01334333344668999999999999987764322 2221100
Q ss_pred c------C----------C------CCChHhHHHHHHHHHHHHHHhCCcceEEEEccCCccc
Q 014785 151 M------G----------G------WLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (418)
Q Consensus 151 ~------g----------g------~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~ 190 (418)
+ | | ++||+..+.|.+..+..+...|- .-+|+=+|||.+.
T Consensus 112 ~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gv-dg~w~D~~E~~~~ 172 (317)
T cd06599 112 AFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGI-DSTWNDNNEYEIW 172 (317)
T ss_pred cEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCC-cEEEecCCCCccC
Confidence 0 0 1 47889999888877655555543 2478889999743
No 166
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=32.10 E-value=2.7e+02 Score=28.48 Aligned_cols=86 Identities=15% Similarity=0.174 Sum_probs=56.4
Q ss_pred HHHHHHHHHc-CCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeE-EEeccCCCchhhHhhcCCCCCh
Q 014785 80 KEDIDLIAKL-GFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWLNK 157 (418)
Q Consensus 80 ~eDi~l~~~l-G~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~-~tL~h~~~P~~l~~~~gg~~~~ 157 (418)
-+|++.++.+ ++. .++++- .|.+ . .. .+.++.+.++++||+.. ++...|..|.+ ++|.++|+
T Consensus 43 ~~d~~~v~~L~~~~-~~v~lH----~~~d-~-~~------d~~~~~~~l~~~GL~v~~i~p~~f~~~~~---~~GSLt~p 106 (378)
T TIGR02635 43 IEDAALVHRLTGIC-PTVALH----IPWD-R-VE------DYEELARYAEELGLKIGAINPNLFQDDDY---KFGSLTHP 106 (378)
T ss_pred HHHHHHHHhhcCCC-Cceeec----cCCc-c-cc------CHHHHHHHHHHcCCceeeeeCCccCCccc---CCCCCCCC
Confidence 6788888887 555 666651 2222 2 22 26778888999999987 77776766654 34788775
Q ss_pred --HhHHHHHHHHHHHH---HHhCCc-ceEE
Q 014785 158 --EIVKYFEIYADTCF---ASFGDR-VKNW 181 (418)
Q Consensus 158 --~~~~~f~~ya~~~~---~~~~d~-v~~w 181 (418)
++...-.++++.|. +.+|.. |..|
T Consensus 107 D~~vR~~AIe~~k~~idiA~eLGa~~I~iW 136 (378)
T TIGR02635 107 DKRIRRKAIDHLLECVDIAKKTGSKDISLW 136 (378)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 46666667776655 677763 4444
No 167
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.86 E-value=1.1e+02 Score=29.31 Aligned_cols=87 Identities=14% Similarity=0.144 Sum_probs=52.1
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCCh-
Q 014785 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNK- 157 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~- 157 (418)
..+=++.++++|++++-+-+..+|....+ .+++..++. +-..+.++++.......|--++ +. - +. .++
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P~~w~~~---~~~~~~~~~---~~~~~~~~~~~~~~i~~Hapy~--iN-l-as-~~~~ 81 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSPRWWRRP---MLEEEVIDW---FKAALETNKNLSQIVLVHAPYL--IN-L-AS-PDEE 81 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCccccCCC---CCCHHHHHH---HHHHHHHcCCCCcceeccCCee--ee-c-CC-CCHH
Confidence 35668999999999999999988877554 455444443 3344778888643334452222 21 0 11 222
Q ss_pred ---HhHHHHHHHHHHHHHHhCCc
Q 014785 158 ---EIVKYFEIYADTCFASFGDR 177 (418)
Q Consensus 158 ---~~~~~f~~ya~~~~~~~~d~ 177 (418)
.+++.|.+..+. ++.+|-.
T Consensus 82 ~r~~sv~~~~~~i~~-A~~lga~ 103 (274)
T TIGR00587 82 KEEKSLDVLDEELKR-CELLGIM 103 (274)
T ss_pred HHHHHHHHHHHHHHH-HHHcCCC
Confidence 455666665555 5566543
No 168
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=31.59 E-value=5.5e+02 Score=25.86 Aligned_cols=192 Identities=17% Similarity=0.143 Sum_probs=101.4
Q ss_pred ccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc-----------hh----hHhh--------------cCCC----CC-
Q 014785 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP-----------LH----LHES--------------MGGW----LN- 156 (418)
Q Consensus 111 ~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P-----------~~----l~~~--------------~gg~----~~- 156 (418)
-+|.+-+.-++++.+.++++|-+.++=|+|-.-- .+ .... ..+- .+
T Consensus 72 l~~d~~i~~~~~lad~vH~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~~~~~p~~mt~ 151 (362)
T PRK10605 72 LHSPEQIAAWKKITAGVHAEGGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALEL 151 (362)
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcccccccccccccccCCCCCccCCH
Confidence 5788889999999999999999999999994311 00 0000 0000 00
Q ss_pred ---hHhHHHHHHHHHHHHHHhCCcceEEEEccCCccccccCcccccc-CCCCCCCCCChHH-HHHHHHHHHHHHHHHHHH
Q 014785 157 ---KEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF-APGRHQHSSTEPY-LVAHHQILAHAAAFSVYQ 231 (418)
Q Consensus 157 ---~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~-~P~~~~~~~~~~~-~~~~n~l~Aha~a~~~~r 231 (418)
.++++.|++=|+.+.+-==|-|. +.+-.||+...| .|... ..++-| -.+-|-+.---+.++.+|
T Consensus 152 ~eI~~ii~~f~~AA~rA~~AGfDGVE---------Ih~ahGyLl~qFLSp~~N--~RtDeYGGslENR~Rf~~Eiv~aVr 220 (362)
T PRK10605 152 EEIPGIVNDFRQAIANAREAGFDLVE---------LHSAHGYLLHQFLSPSSN--QRTDQYGGSVENRARLVLEVVDAGI 220 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEE---------EcccccchHHHhcCCcCC--CCCCcCCCcHHHHHHHHHHHHHHHH
Confidence 45788888876665543224443 456678887654 34321 111111 123344444457788888
Q ss_pred hhhcCCCCCeEEEEecCccc---ccCCCCHHH--HHHHHHHHHHhccccccccc---cC--CCChhHHHhhccC--CC--
Q 014785 232 RKYKDKQGGNIGLVVDCEWA---EANSDKIED--KSAAARRLDFQIGWYLHPIY---YG--DYPEVMRNNLGDQ--LP-- 297 (418)
Q Consensus 232 ~~~~~~~~~~IG~~~~~~~~---~P~~~~p~d--~~AA~~~~~~~~~~fldp~~---~G--~YP~~~~~~l~~~--lp-- 297 (418)
+... ++ .||+-++..-. .+...++++ +..+...... ---+++.-. .+ .|+..+.+.+++. .|
T Consensus 221 ~~vg--~~-~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~-giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~pv~ 296 (362)
T PRK10605 221 AEWG--AD-RIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKR-GIAYLHMSEPDWAGGEPYSDAFREKVRARFHGVII 296 (362)
T ss_pred HHcC--CC-eEEEEECCccccccCCCCCCHHHHHHHHHHHHHHc-CCCEEEeccccccCCccccHHHHHHHHHHCCCCEE
Confidence 8642 33 58988875421 222234444 3444433321 011223221 11 2333343444432 12
Q ss_pred ---CCChhhHHhh--cCCCCEEEee
Q 014785 298 ---KFMQKDKELV--RNSLDFVGLN 317 (418)
Q Consensus 298 ---~~t~~d~~~i--kg~~DFiGiN 317 (418)
.+++++.+.+ .|.+|++|+-
T Consensus 297 ~~G~~~~~~ae~~i~~G~~D~V~~g 321 (362)
T PRK10605 297 GAGAYTAEKAETLIGKGLIDAVAFG 321 (362)
T ss_pred EeCCCCHHHHHHHHHcCCCCEEEEC
Confidence 3566665544 3678999874
No 169
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=30.94 E-value=1.7e+02 Score=30.92 Aligned_cols=61 Identities=10% Similarity=0.014 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCCeeeeccc--cccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCch
Q 014785 80 KEDIDLIAKLGFDAYRFSIS--WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPL 145 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~--W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~ 145 (418)
++-+++|+++|++.+-++++ =.++...-.. ..+ .+-..+.|..|+++||.+.+.+. +++|.
T Consensus 287 ~ell~~l~~aG~~~v~iGiES~~~~~L~~~~K-~~t---~~~~~~ai~~l~~~Gi~~~~~~I-~G~P~ 349 (497)
T TIGR02026 287 ADILHLYRRAGLVHISLGTEAAAQATLDHFRK-GTT---TSTNKEAIRLLRQHNILSEAQFI-TGFEN 349 (497)
T ss_pred HHHHHHHHHhCCcEEEEccccCCHHHHHHhcC-CCC---HHHHHHHHHHHHHCCCcEEEEEE-EECCC
Confidence 45689999999998888873 1222221101 233 45577899999999999876654 35553
No 170
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=30.63 E-value=1e+02 Score=37.61 Aligned_cols=59 Identities=20% Similarity=0.283 Sum_probs=43.2
Q ss_pred ccchHHHHHHHHHcCCCeeeeccccc---------------cccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEe--
Q 014785 76 YHRYKEDIDLIAKLGFDAYRFSISWS---------------RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL-- 138 (418)
Q Consensus 76 y~~~~eDi~l~~~lG~~~~R~si~W~---------------ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL-- 138 (418)
+....+-++-+++||++++=+|=-+. +|-|+= | +.+-+++++++|+++||.+|+.+
T Consensus 757 f~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l-G------~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 757 FADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI-G------GEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred HHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc-C------CHHHHHHHHHHHHHCCCEEEEEecc
Confidence 44566779999999999997663332 333332 2 35568999999999999999975
Q ss_pred ccC
Q 014785 139 YHW 141 (418)
Q Consensus 139 ~h~ 141 (418)
.|.
T Consensus 830 NH~ 832 (1693)
T PRK14507 830 NHM 832 (1693)
T ss_pred ccc
Confidence 454
No 171
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=30.43 E-value=2e+02 Score=28.21 Aligned_cols=73 Identities=14% Similarity=0.028 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHHHHHHHHhCCcceEEEEccCCccccccCcc
Q 014785 117 ITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYC 196 (418)
Q Consensus 117 ~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~ 196 (418)
++-+.+.++.++++||++.+.+. +++|. .+ .+.+.+=++.+.+.=-+.|+.....-.|+.....-|.
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI-~GlPg---------et---~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT~L~~~~~ 228 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI-LGLPG---------ED---REEMMETAKIVSLLDVDGIKIHPLHVVKGTKMAKMYE 228 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE-ECCCC---------CC---HHHHHHHHHHHHhcCCCEEEEEEEEecCCCHHHHHHH
Confidence 45678899999999999777664 45553 22 3555555555544334678888888888866555455
Q ss_pred ccccCC
Q 014785 197 TGIFAP 202 (418)
Q Consensus 197 ~g~~~P 202 (418)
.|.+.|
T Consensus 229 ~g~~~~ 234 (302)
T TIGR01212 229 KGELKT 234 (302)
T ss_pred cCCCCC
Confidence 565544
No 172
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.34 E-value=1.8e+02 Score=28.13 Aligned_cols=73 Identities=11% Similarity=0.004 Sum_probs=52.5
Q ss_pred cCccccchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhH
Q 014785 72 AVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLH 148 (418)
Q Consensus 72 a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~ 148 (418)
+++..+...+-.+.+|++|+..+|-+..=+|--|.+.- .+-++ .+..+-+.+++.||..+.+.++-..+..+.
T Consensus 36 sie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~-G~g~~---gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~ 108 (266)
T PRK13398 36 AVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQ-GLGEE---GLKILKEVGDKYNLPVVTEVMDTRDVEEVA 108 (266)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccC-CcHHH---HHHHHHHHHHHcCCCEEEeeCChhhHHHHH
Confidence 45667777888899999999999999755776665411 13344 455666667999999999988755555554
No 173
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=30.32 E-value=4.7e+02 Score=26.86 Aligned_cols=137 Identities=20% Similarity=0.248 Sum_probs=79.1
Q ss_pred hHHHHHHHHHcCCCeeeeccccccc-----------cccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEec--------
Q 014785 79 YKEDIDLIAKLGFDAYRFSISWSRI-----------FPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY-------- 139 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri-----------~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~-------- 139 (418)
..+-++.++++|++.+=+.=-|..- .|+. . ++ +.| ...+++.+++.|+++=+=+-
T Consensus 60 i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~-~-kF-P~G---l~~l~~~i~~~Gmk~GlW~ePe~v~~~S 133 (394)
T PF02065_consen 60 ILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP-K-KF-PNG---LKPLADYIHSLGMKFGLWFEPEMVSPDS 133 (394)
T ss_dssp HHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT-T-TS-TTH---HHHHHHHHHHTT-EEEEEEETTEEESSS
T ss_pred HHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh-h-hh-CCc---HHHHHHHHHHCCCeEEEEeccccccchh
Confidence 4556799999999998888889643 3332 1 22 124 67999999999999765330
Q ss_pred --cCCCchhhHhhcC-----C-------CCChHhHHHHHHHHHHHHHHhC-CcceEEEEccCCccccccCccccccCCCC
Q 014785 140 --HWDLPLHLHESMG-----G-------WLNKEIVKYFEIYADTCFASFG-DRVKNWITINEPLQTAVNGYCTGIFAPGR 204 (418)
Q Consensus 140 --h~~~P~~l~~~~g-----g-------~~~~~~~~~f~~ya~~~~~~~~-d~v~~w~t~NEp~~~~~~gy~~g~~~P~~ 204 (418)
.-..|.|+....+ | ..+|++.+...+-...+++.+| |.+|+ =+|.... .++.
T Consensus 134 ~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~--D~n~~~~-----------~~~~ 200 (394)
T PF02065_consen 134 DLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKW--DFNRDIT-----------EAGS 200 (394)
T ss_dssp CHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEE--E-TS-TT-----------S-SS
T ss_pred HHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEe--ccccCCC-----------CCCC
Confidence 1246888743211 1 3578889988888888888887 33332 2332111 1111
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeE
Q 014785 205 HQHSSTEPYLVAHHQILAHAAAFSVYQRKYKDKQGGNI 242 (418)
Q Consensus 205 ~~~~~~~~~~~~~n~l~Aha~a~~~~r~~~~~~~~~~I 242 (418)
. ... .+.|...++--+.++.+++.+ |+..|
T Consensus 201 ~--~~~---~~~~~~~~~~y~l~~~L~~~~---P~v~i 230 (394)
T PF02065_consen 201 P--SLP---EGYHRYVLGLYRLLDRLRARF---PDVLI 230 (394)
T ss_dssp T--TS----GHHHHHHHHHHHHHHHHHHHT---TTSEE
T ss_pred C--Cch---HHHHHHHHHHHHHHHHHHHhC---CCcEE
Confidence 1 111 455655555556677777766 55555
No 174
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=30.31 E-value=67 Score=28.57 Aligned_cols=62 Identities=13% Similarity=0.039 Sum_probs=40.5
Q ss_pred ccchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEE
Q 014785 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (418)
Q Consensus 76 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~t 137 (418)
....++-+++++.+|++.+++...+-...+...-.+--....+.++.+++.+.++|+++.+=
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE 131 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALE 131 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEe
Confidence 55678889999999999999997641111111000112234567788888888999876654
No 175
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=30.23 E-value=87 Score=32.61 Aligned_cols=60 Identities=17% Similarity=0.300 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccC---CCCccChhHHHHHHHHHHHHHHcCCe-eEEEeccCCCch
Q 014785 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPL 145 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~p~~---~g~~~n~~~~~~y~~~i~~l~~~gi~-p~~tL~h~~~P~ 145 (418)
++.+++|+++|++.+-+++. ..-++- -+...+ .+.+.+.++.|++.|++ +-+.|. +++|.
T Consensus 151 ~e~l~~lk~~G~~risiGvq--S~~~~~l~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlPg 214 (455)
T TIGR00538 151 KDVIDALRDEGFNRLSFGVQ--DFNKEVQQAVNRIQP---EEMIFELMNHAREAGFTSINIDLI-YGLPK 214 (455)
T ss_pred HHHHHHHHHcCCCEEEEcCC--CCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeEE-eeCCC
Confidence 68899999999996666652 222211 120223 56678999999999997 334442 45554
No 176
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=29.46 E-value=1.7e+02 Score=25.10 Aligned_cols=58 Identities=16% Similarity=0.065 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHHHHHHHHhCCcc
Q 014785 117 ITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRV 178 (418)
Q Consensus 117 ~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v 178 (418)
.+=+.-+++.|++.|++|++.+.= -.+.|.. |-|. +++..+.|.+=.+.+++++|-+|
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wyd--ytG~-~~~~r~~~y~kI~~~~~~~gf~v 92 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQP-VNGKWYD--YTGL-SKEMRQEYYKKIKYQLKSQGFNV 92 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-----HHHHH--HTT---HHHHHHHHHHHHHHHHTTT--E
T ss_pred HHHHHHHHHHHHHcCCceEEEecC-CcHHHHH--HhCC-CHHHHHHHHHHHHHHHHHCCCEE
Confidence 444678999999999999998830 1123432 4554 67777888888888888888643
No 177
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=29.27 E-value=1.8e+02 Score=29.23 Aligned_cols=85 Identities=20% Similarity=0.188 Sum_probs=58.2
Q ss_pred ccCccccchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhh
Q 014785 71 VAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHES 150 (418)
Q Consensus 71 ~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~ 150 (418)
+|.=||+ |+--+. ..+.|+..+|+. | | .+- .-+..+.+++.++++|+-.=+..+|-.++.-+.++
T Consensus 76 VADIHFd-~~lAl~-a~~~g~dkiRIN-------P---G-Nig--~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~k 140 (346)
T TIGR00612 76 VADIHFD-YRLAAL-AMAKGVAKVRIN-------P---G-NIG--FRERVRDVVEKARDHGKAMRIGVNHGSLERRLLEK 140 (346)
T ss_pred EEeeCCC-cHHHHH-HHHhccCeEEEC-------C---C-CCC--CHHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHH
Confidence 3444554 333332 234577777752 2 4 332 14678999999999999999999999999999999
Q ss_pred cCCCCChHhHHHHHHHHHHH
Q 014785 151 MGGWLNKEIVKYFEIYADTC 170 (418)
Q Consensus 151 ~gg~~~~~~~~~f~~ya~~~ 170 (418)
||+-+....++.-.++++.+
T Consensus 141 yg~~t~eamveSAl~~v~~l 160 (346)
T TIGR00612 141 YGDATAEAMVQSALEEAAIL 160 (346)
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 87644455666666666654
No 178
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=28.77 E-value=2.8e+02 Score=26.35 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=37.6
Q ss_pred cchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHc-CCeeEE
Q 014785 77 HRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQK-GIQPYV 136 (418)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~-gi~p~~ 136 (418)
..+++-+++++++|++.+=+.+......+.. ..+. +..+++.+.+.++ |+...+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~---~~~~---~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSR---PLKK---ERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccCCC---CCCH---HHHHHHHHHHHHcCCCcEEE
Confidence 5678999999999999998888765444332 2233 4466777777777 666444
No 179
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=28.13 E-value=1.1e+02 Score=29.57 Aligned_cols=80 Identities=11% Similarity=0.074 Sum_probs=54.2
Q ss_pred HHHHHHHHcCCCeeeeccccccccccC-CCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHh
Q 014785 81 EDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEI 159 (418)
Q Consensus 81 eDi~l~~~lG~~~~R~si~W~ri~p~~-~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~ 159 (418)
.+++++++.|++.+|+.++=|...-.. .| .-.++.++...+.++.+++.|+++.++..+| .+ +... .
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~-~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~------~d--~~~~---~ 149 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSWDLHVTEALG-TTLEENLAMIRDSVAYLKSHGREVIFDAEHF------FD--GYKA---N 149 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCCHHHHHHHcC-CCHHHHHHHHHHHHHHHHHcCCeEEEeEEec------cc--cCCC---C
Confidence 689999999999999987644332221 13 2235678899999999999999988876655 11 1112 2
Q ss_pred HHHHHHHHHHHHH
Q 014785 160 VKYFEIYADTCFA 172 (418)
Q Consensus 160 ~~~f~~ya~~~~~ 172 (418)
.+.+.++++.+.+
T Consensus 150 ~~~~~~~~~~~~~ 162 (273)
T cd07941 150 PEYALATLKAAAE 162 (273)
T ss_pred HHHHHHHHHHHHh
Confidence 4555666666644
No 180
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=28.07 E-value=89 Score=29.68 Aligned_cols=61 Identities=8% Similarity=-0.001 Sum_probs=40.3
Q ss_pred cccchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEE
Q 014785 75 HYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVT 137 (418)
Q Consensus 75 ~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~t 137 (418)
...+++.-|++.+.+|.+++++........++. . ..-+..++.++++.+.+.++||+..+=
T Consensus 88 ~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~-~-~~~~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 88 SLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPP-N-VIWGRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCH-H-HHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 345666778999999999999964322111111 1 122345677888889999999976554
No 181
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=27.52 E-value=6e+02 Score=25.05 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=42.7
Q ss_pred hHHHHHHHHHcCCCeeeecc--cccc---cccc-----------------------CCCCccChhHHHHHHHHHHHHHHc
Q 014785 79 YKEDIDLIAKLGFDAYRFSI--SWSR---IFPD-----------------------GLGTKINMEGITFYNNIIDALLQK 130 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si--~W~r---i~p~-----------------------~~g~~~n~~~~~~y~~~i~~l~~~ 130 (418)
.++=|+.|+..++|.+.+=+ +|.= ..|. ..| .+.+ +-++++++.++++
T Consensus 19 ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~-~YT~---~di~eiv~yA~~r 94 (326)
T cd06564 19 LKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDG-YYTK---EEFKELIAYAKDR 94 (326)
T ss_pred HHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCC-cccH---HHHHHHHHHHHHc
Confidence 56678999999999887633 2211 1111 113 4554 4478999999999
Q ss_pred CCeeEEEeccCCCchhhH
Q 014785 131 GIQPYVTLYHWDLPLHLH 148 (418)
Q Consensus 131 gi~p~~tL~h~~~P~~l~ 148 (418)
||++|--+ |+|....
T Consensus 95 gI~vIPEI---D~PGH~~ 109 (326)
T cd06564 95 GVNIIPEI---DSPGHSL 109 (326)
T ss_pred CCeEeccC---CCcHHHH
Confidence 99998766 7786643
No 182
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=27.35 E-value=7.2e+02 Score=25.84 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=78.3
Q ss_pred HHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHH----HHHHcCCeeEE-EeccCCCchhhHhhcCCCCCh
Q 014785 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIID----ALLQKGIQPYV-TLYHWDLPLHLHESMGGWLNK 157 (418)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~----~l~~~gi~p~~-tL~h~~~P~~l~~~~gg~~~~ 157 (418)
++.|.+||+..|-|- =..|.|++ . ...+ -.+-.+++++ .+.+.||+..+ |..-|..|.+.. |+++||
T Consensus 84 Fef~~kLg~~~~~FH--D~D~~peg-~-~~~E-~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~---GA~TnP 155 (434)
T TIGR02630 84 FEFFEKLGVPYYCFH--DRDIAPEG-A-SLRE-TNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMH---GAATSP 155 (434)
T ss_pred HHHHHHhCCCeeccC--ccccCCCC-C-CHHH-HHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccC---CcCCCC
Confidence 567999999987664 23477886 2 3332 2233344444 45667998654 667789998753 899887
Q ss_pred H--hHHHHHHHHHH---HHHHhCCc-ceEEEEccCCccccccCccccccCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 014785 158 E--IVKYFEIYADT---CFASFGDR-VKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAAAFSVYQ 231 (418)
Q Consensus 158 ~--~~~~f~~ya~~---~~~~~~d~-v~~w~t~NEp~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~n~l~Aha~a~~~~r 231 (418)
+ +...=+.-++. +.+++|.. +.+|- ...||. .+ ..+......-|+..+-..+++..+
T Consensus 156 d~~Vra~A~~qvk~alD~~~eLGgenyV~Wg--------GREGye----~~-----lntD~~~e~d~~~~~l~~~~dYa~ 218 (434)
T TIGR02630 156 DADVFAYAAAQVKKALEVTKKLGGENYVFWG--------GREGYE----TL-----LNTDMKRELDHLARFLHMAVDYAK 218 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEECC--------Cccccc----cc-----cccCHHHHHHHHHHHHHHHHHHhh
Confidence 4 33322333333 34667653 22221 112221 11 122334455566666667777666
Q ss_pred hhhcCCCCCeEEEEecCcccccCC
Q 014785 232 RKYKDKQGGNIGLVVDCEWAEANS 255 (418)
Q Consensus 232 ~~~~~~~~~~IG~~~~~~~~~P~~ 255 (418)
++. .+++|. +-.-|..|..
T Consensus 219 ~iG---f~~~f~--IEPKP~EPr~ 237 (434)
T TIGR02630 219 KIG---FKGQFL--IEPKPKEPTK 237 (434)
T ss_pred hcC---CCceEE--eccCCCCccc
Confidence 653 455654 4445666643
No 183
>PRK01060 endonuclease IV; Provisional
Probab=27.18 E-value=3.2e+02 Score=25.89 Aligned_cols=90 Identities=12% Similarity=0.166 Sum_probs=51.2
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeE-EEeccCCCchhhHhhcCCCCCh
Q 014785 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWLNK 157 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~-~tL~h~~~P~~l~~~~gg~~~~ 157 (418)
+++-++.++++|++++=+.+.-++.... + .++.+- .+++-+.+.++||+.. ++. |-..+.-+... .-=..+
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~--~-~~~~~~---~~~lk~~~~~~gl~~~~~~~-h~~~~~nl~~~-d~~~r~ 85 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKR--K-PLEELN---IEAFKAACEKYGISPEDILV-HAPYLINLGNP-NKEILE 85 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcC--C-CCCHHH---HHHHHHHHHHcCCCCCceEE-ecceEecCCCC-CHHHHH
Confidence 6788999999999999998776554432 2 455433 4456666789999853 232 32221111100 000012
Q ss_pred HhHHHHHHHHHHHHHHhCCc
Q 014785 158 EIVKYFEIYADTCFASFGDR 177 (418)
Q Consensus 158 ~~~~~f~~ya~~~~~~~~d~ 177 (418)
..++.+.+.++. ++.+|-.
T Consensus 86 ~s~~~~~~~i~~-A~~lga~ 104 (281)
T PRK01060 86 KSRDFLIQEIER-CAALGAK 104 (281)
T ss_pred HHHHHHHHHHHH-HHHcCCC
Confidence 345666666665 4667653
No 184
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=27.12 E-value=1.7e+02 Score=28.26 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=48.0
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChH
Q 014785 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKE 158 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~ 158 (418)
-++|+++..+.|++.+|+++..+. ++...+.++.+++.|+++.+++.--+ ++ +.
T Consensus 93 ~~~di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~i~~~~---------~~---~~ 146 (275)
T cd07937 93 VELFVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGKHVEGAICYTG---------SP---VH 146 (275)
T ss_pred HHHHHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCeEEEEEEecC---------CC---CC
Confidence 478999999999999999775432 45677889999999999887663111 12 22
Q ss_pred hHHHHHHHHHHHHH
Q 014785 159 IVKYFEIYADTCFA 172 (418)
Q Consensus 159 ~~~~f~~ya~~~~~ 172 (418)
..+.+.++++.+.+
T Consensus 147 ~~~~~~~~~~~~~~ 160 (275)
T cd07937 147 TLEYYVKLAKELED 160 (275)
T ss_pred CHHHHHHHHHHHHH
Confidence 35666677777644
No 185
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=26.88 E-value=4.5e+02 Score=26.82 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=52.0
Q ss_pred chHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEE-EeccCCCchhhHhhcCCCCC
Q 014785 78 RYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYV-TLYHWDLPLHLHESMGGWLN 156 (418)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~-tL~h~~~P~~l~~~~gg~~~ 156 (418)
...+-++.++++|++.+=| ....+.|-+ - ...+.. ...+++-+.|.++||++.. +..-+..|.+ +.|++.+
T Consensus 33 ~~~e~i~~la~~GfdgVE~--~~~dl~P~~-~-~~~e~~-~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~---~~g~las 104 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTF--HDDDLIPFG-A-PPQERD-QIVRRFKKALDETGLKVPMVTTNLFSHPVF---KDGGFTS 104 (382)
T ss_pred CHHHHHHHHHHhCCCEEEe--cccccCCCC-C-ChhHHH-HHHHHHHHHHHHhCCeEEEeeccccCCccc---cCCCCCC
Confidence 4578899999999998854 334455543 1 111111 3367788889999999664 4322333433 2267776
Q ss_pred hH--hHHH-HHHH--HHHHHHHhCCc
Q 014785 157 KE--IVKY-FEIY--ADTCFASFGDR 177 (418)
Q Consensus 157 ~~--~~~~-f~~y--a~~~~~~~~d~ 177 (418)
++ +.+. +... +-.+++.+|-.
T Consensus 105 ~d~~vR~~ai~~~kraId~A~eLGa~ 130 (382)
T TIGR02631 105 NDRSVRRYALRKVLRNMDLGAELGAE 130 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 42 2222 2222 22235667654
No 186
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=26.88 E-value=69 Score=26.39 Aligned_cols=60 Identities=22% Similarity=0.351 Sum_probs=41.2
Q ss_pred CccccchHHHHHHHH-HcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 73 VDHYHRYKEDIDLIA-KLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 73 ~d~y~~~~eDi~l~~-~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
-+||+-|.+|-..++ .+|++...-......-.|.- | +. ...++..+..|.++|.++.+.=
T Consensus 24 G~fYe~y~~DA~~~a~~l~~~~~~~~~~~~~~~~~~-g--fp---~~~l~~~l~~Ll~~G~~V~i~~ 84 (113)
T PF01624_consen 24 GDFYEAYGEDAEFVAEILGLKLSKRKTGGGKSVPMA-G--FP---KSQLDKYLKKLLEAGYRVAIYE 84 (113)
T ss_dssp TTEEEEECHHHHHHHHHHTSSSEEEECSSSECEEEE-E--EE---GGGHHHHHHHHHHTT-EEEEEE
T ss_pred CCEEEEEccCHHHHHHhccceeeeccccccccccEe-c--cc---HHHHHHHHHHHHHcCCEEEEEE
Confidence 369999999977665 58988876654443323443 3 54 3447788888999999988754
No 187
>PRK06256 biotin synthase; Validated
Probab=26.57 E-value=1.1e+02 Score=30.30 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=39.0
Q ss_pred chHHHHHHHHHcCCCeeeecc-ccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 78 RYKEDIDLIAKLGFDAYRFSI-SWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si-~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
.-++.++.|+++|++.+-+++ +=.++++.-.. .-+ ++.+.+.|+.+++.||++..++
T Consensus 150 l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~-~~t---~~~~i~~i~~a~~~Gi~v~~~~ 207 (336)
T PRK06256 150 LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVT-THT---YEDRIDTCEMVKAAGIEPCSGG 207 (336)
T ss_pred CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCC-CCC---HHHHHHHHHHHHHcCCeeccCe
Confidence 457889999999999998876 32233333211 122 5667789999999999765443
No 188
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=26.42 E-value=1.5e+02 Score=24.70 Aligned_cols=51 Identities=24% Similarity=0.281 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCCeeeeccc-cccc-cccCCCCcc-ChhHHHHHHHHHHHHHHcCCee
Q 014785 80 KEDIDLIAKLGFDAYRFSIS-WSRI-FPDGLGTKI-NMEGITFYNNIIDALLQKGIQP 134 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~-W~ri-~p~~~g~~~-n~~~~~~y~~~i~~l~~~gi~p 134 (418)
.+.++.|+++|++.+++|++ -+.- ..+ .+ ....++...+.++.|+++|+.+
T Consensus 90 ~~~l~~l~~~~~~~i~~~l~s~~~~~~~~----~~~~~~~~~~~~~~l~~l~~~g~~~ 143 (166)
T PF04055_consen 90 EELLDELKKLGVDRIRISLESLDEESVLR----IINRGKSFERVLEALERLKEAGIPR 143 (166)
T ss_dssp HHHHHHHHHTTCSEEEEEEBSSSHHHHHH----HHSSTSHHHHHHHHHHHHHHTTSET
T ss_pred HHHHHHHHhcCccEEecccccCCHHHhhh----hhcCCCCHHHHHHHHHHHHHcCCCc
Confidence 88999999999999999984 2221 111 11 1234677889999999999986
No 189
>PRK05660 HemN family oxidoreductase; Provisional
Probab=26.36 E-value=2.8e+02 Score=28.09 Aligned_cols=93 Identities=11% Similarity=0.046 Sum_probs=56.8
Q ss_pred HHHHHHHHHcCCCeeeeccc-cc-cccccCCCCccChhHHHHHHHHHHHHHHcCCeeE-EEeccCCCchhhHhhcCCCCC
Q 014785 80 KEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY-VTLYHWDLPLHLHESMGGWLN 156 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~-W~-ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~-~tL~h~~~P~~l~~~~gg~~~ 156 (418)
++.++.|+++|++.+-++|. =+ ++...- |..-+ .+-..+.|+.+++.|+.++ ++|. +++|. .+
T Consensus 107 ~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l-~r~~~---~~~~~~ai~~~~~~G~~~v~~dli-~Glpg---------qt 172 (378)
T PRK05660 107 ADRFVGYQRAGVNRISIGVQSFSEEKLKRL-GRIHG---PDEAKRAAKLAQGLGLRSFNLDLM-HGLPD---------QS 172 (378)
T ss_pred HHHHHHHHHcCCCEEEeccCcCCHHHHHHh-CCCCC---HHHHHHHHHHHHHcCCCeEEEEee-cCCCC---------CC
Confidence 58999999999996666663 21 122111 20122 4556778999999999875 5553 56664 22
Q ss_pred hHhHHHHHHHHHHHHHHhCCcceEEEEccCCcc
Q 014785 157 KEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (418)
Q Consensus 157 ~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 189 (418)
.+.|.+-.+.+.+.=-+++..+...=||+.
T Consensus 173 ---~~~~~~~l~~~~~l~p~~is~y~l~~~~gT 202 (378)
T PRK05660 173 ---LEEALDDLRQAIALNPPHLSWYQLTIEPNT 202 (378)
T ss_pred ---HHHHHHHHHHHHhcCCCeEEeeccEeccCC
Confidence 344555555554433467777776666664
No 190
>PTZ00445 p36-lilke protein; Provisional
Probab=26.22 E-value=99 Score=29.03 Aligned_cols=49 Identities=16% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChH---------hHHHHHHHHHHHHH
Q 014785 121 NNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKE---------IVKYFEIYADTCFA 172 (418)
Q Consensus 121 ~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~---------~~~~f~~ya~~~~~ 172 (418)
+.+++.|++.||+.+++=+--++=.-.. |||.++. ..+.|..+...+-+
T Consensus 32 ~~~v~~L~~~GIk~Va~D~DnTlI~~Hs---gG~~~~~~~~~~~~~~~tpefk~~~~~l~~ 89 (219)
T PTZ00445 32 DKFVDLLNECGIKVIASDFDLTMITKHS---GGYIDPDNDDIRVLTSVTPDFKILGKRLKN 89 (219)
T ss_pred HHHHHHHHHcCCeEEEecchhhhhhhhc---ccccCCCcchhhhhccCCHHHHHHHHHHHH
No 191
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=25.82 E-value=1.2e+02 Score=29.64 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=39.6
Q ss_pred hHHHHHHHHHcCCCeee-eccc-c-----ccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCc
Q 014785 79 YKEDIDLIAKLGFDAYR-FSIS-W-----SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLP 144 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R-~si~-W-----~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P 144 (418)
.++.++.||++|++++- .+.+ - .++.|. ..+ .+.+.+.+..+++.||++..++. +++|
T Consensus 106 ~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~----~~t---~~~~l~~i~~a~~~Gi~~~s~~i-iG~~ 170 (309)
T TIGR00423 106 IEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPN----KLS---SDEWLEVIKTAHRLGIPTTATMM-FGHV 170 (309)
T ss_pred HHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCC----CCC---HHHHHHHHHHHHHcCCCceeeEE-ecCC
Confidence 47889999999999885 2431 1 122232 233 45677999999999999987764 3444
No 192
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=25.80 E-value=2.4e+02 Score=30.18 Aligned_cols=107 Identities=17% Similarity=0.147 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCCeeeeccc--cccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCCh
Q 014785 80 KEDIDLIAKLGFDAYRFSIS--WSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNK 157 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~--W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~ 157 (418)
++.+++|+++|++.+-+++. -.+++-.- +...+ .+-..+.++.+++.|+++.+.|. +++|. .
T Consensus 206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~i-nRght---~~~v~~Ai~~lr~~G~~v~~~LM-~GLPg---------q-- 269 (522)
T TIGR01211 206 EEHIDRMLKLGATRVELGVQTIYNDILERT-KRGHT---VRDVVEATRLLRDAGLKVVYHIM-PGLPG---------S-- 269 (522)
T ss_pred HHHHHHHHHcCCCEEEEECccCCHHHHHHh-CCCCC---HHHHHHHHHHHHHcCCeEEEEee-cCCCC---------C--
Confidence 68899999999997777763 22332211 10122 45566788899999998666664 56664 1
Q ss_pred HhHHHHHHHHHHHHH--HhC-CcceEEEEccCCccccccCccccccCCC
Q 014785 158 EIVKYFEIYADTCFA--SFG-DRVKNWITINEPLQTAVNGYCTGIFAPG 203 (418)
Q Consensus 158 ~~~~~f~~ya~~~~~--~~~-d~v~~w~t~NEp~~~~~~gy~~g~~~P~ 203 (418)
+.+.+.+=++.+++ .++ |.|+.+-+.=.|+.....-|..|.|.|-
T Consensus 270 -t~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~ 317 (522)
T TIGR01211 270 -SFERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPY 317 (522)
T ss_pred -CHHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCC
Confidence 13344444555554 343 6778777766776554444666777664
No 193
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=25.42 E-value=1.4e+02 Score=28.47 Aligned_cols=61 Identities=8% Similarity=0.093 Sum_probs=39.5
Q ss_pred ccchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 76 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
-.+++.-+++++++|.+.++++-. +..+.....+.-...++.++++++.+.+.||+..+=.
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 345677799999999999998521 1111110001122345677788888999999887754
No 194
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=25.29 E-value=2.1e+02 Score=31.70 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHHHHHH
Q 014785 119 FYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCF 171 (418)
Q Consensus 119 ~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~ 171 (418)
....+|+.|+++|+..=+.++|-.++.-+..+||. +....++.-.+|++.|-
T Consensus 211 ~f~~~v~~ak~~~~~iRIGvN~GSLs~ri~~~yGd-tp~gmVeSAle~~~i~e 262 (733)
T PLN02925 211 VFTPLVEKCKKYGRAMRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICR 262 (733)
T ss_pred HHHHHHHHHHHCCCCEEEecCCcCchHHHHHHhCC-ChHHHHHHHHHHHHHHH
Confidence 34459999999999999999999999988888865 43445555555555543
No 195
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=24.50 E-value=1.1e+02 Score=28.37 Aligned_cols=50 Identities=26% Similarity=0.393 Sum_probs=31.8
Q ss_pred ccchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEecc
Q 014785 76 YHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYH 140 (418)
Q Consensus 76 y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h 140 (418)
....++||+.++++|.+.+=|+.- +.+| .+|. +...++++.+. |+-..+|
T Consensus 71 ~~~M~~dI~~~~~~GadG~VfG~L------~~dg-~iD~---~~~~~Li~~a~-----~~~~tFH 120 (201)
T PF03932_consen 71 IEIMKEDIRMLRELGADGFVFGAL------TEDG-EIDE---EALEELIEAAG-----GMPVTFH 120 (201)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE--B------ETTS-SB-H---HHHHHHHHHHT-----TSEEEE-
T ss_pred HHHHHHHHHHHHHcCCCeeEEEeE------CCCC-CcCH---HHHHHHHHhcC-----CCeEEEe
Confidence 345678999999999999999963 2236 8994 55667777765 4444556
No 196
>PLN02411 12-oxophytodienoate reductase
Probab=24.24 E-value=6.7e+02 Score=25.61 Aligned_cols=124 Identities=16% Similarity=0.185 Sum_probs=72.9
Q ss_pred ccChhHHHHHHHHHHHHHHcCCeeEEEeccCC---Cchhh--------------H------hhcC---C------CCC--
Q 014785 111 KINMEGITFYNNIIDALLQKGIQPYVTLYHWD---LPLHL--------------H------ESMG---G------WLN-- 156 (418)
Q Consensus 111 ~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~---~P~~l--------------~------~~~g---g------~~~-- 156 (418)
-++.+-+.-++++.+.++++|-+.++=|+|-. .|.+. . ...+ . .+.
T Consensus 80 i~~d~~i~~~~~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~pr~mt~~e 159 (391)
T PLN02411 80 IYSDEQVEAWKKVVDAVHAKGSIIFCQLWHVGRASHQVYQPGGAAPISSTNKPISERWRILMPDGSYGKYPKPRALETSE 159 (391)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEeccCCCCCCccccccCCCCccCCccccccCCcccccCCccccCCCCCccCCHHH
Confidence 56888899999999999999999999999932 11100 0 0000 0 111
Q ss_pred -hHhHHHHHHHHHHHHHHhCCcceEEEEccCCccccccCcccccc-CCCCCCCCCChHH-HHHHHHHHHHHHHHHHHHhh
Q 014785 157 -KEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIF-APGRHQHSSTEPY-LVAHHQILAHAAAFSVYQRK 233 (418)
Q Consensus 157 -~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~-~P~~~~~~~~~~~-~~~~n~l~Aha~a~~~~r~~ 233 (418)
.++++.|++=|+.+.+-==|-|. +.+-.||+...| .|... ..++-| -..-|-+.--.+.++.+|+.
T Consensus 160 I~~ii~~f~~AA~rA~~AGFDGVE---------IH~AhGYLl~QFLSp~tN--~RtDeYGGSlENR~RF~lEIi~aVr~~ 228 (391)
T PLN02411 160 IPEVVEHYRQAALNAIRAGFDGIE---------IHGAHGYLIDQFLKDGIN--DRTDEYGGSIENRCRFLMQVVQAVVSA 228 (391)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEE---------EccccchHHHHhCCCccC--CCCCcCCCCHHHHhHHHHHHHHHHHHH
Confidence 23677888866666543224453 456778887654 34321 111111 01234444445777888876
Q ss_pred hcCCCCCeEEEEecC
Q 014785 234 YKDKQGGNIGLVVDC 248 (418)
Q Consensus 234 ~~~~~~~~IG~~~~~ 248 (418)
.. ++ .||+.++.
T Consensus 229 vg--~d-~vgvRiS~ 240 (391)
T PLN02411 229 IG--AD-RVGVRVSP 240 (391)
T ss_pred cC--CC-eEEEEEcc
Confidence 42 34 59998885
No 197
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=24.17 E-value=2.6e+02 Score=29.04 Aligned_cols=62 Identities=18% Similarity=0.350 Sum_probs=39.1
Q ss_pred hHHHHHHHHHcCCCeeeeccc-cc-cccccCCCCccChhHHHHHHHHHHHHHHcCCe-eEEEeccCCCch
Q 014785 79 YKEDIDLIAKLGFDAYRFSIS-WS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPL 145 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~-W~-ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~-p~~tL~h~~~P~ 145 (418)
-++.+++|+++|++.+.+++. =+ ++.-. -+..-+ .+-..+.|+.+++.|+. +-++|. +++|.
T Consensus 150 t~e~l~~l~~aG~~risiGvqS~~~~~L~~-l~r~~~---~~~~~~ai~~l~~~G~~~v~~dli-~GlPg 214 (453)
T PRK09249 150 DLEMLDALRELGFNRLSLGVQDFDPEVQKA-VNRIQP---FEFTFALVEAARELGFTSINIDLI-YGLPK 214 (453)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCHHHHHH-hCCCCC---HHHHHHHHHHHHHcCCCcEEEEEE-ccCCC
Confidence 368899999999997777763 21 11111 120222 55677899999999994 444443 45554
No 198
>PRK15492 triosephosphate isomerase; Provisional
Probab=23.62 E-value=1.9e+02 Score=27.91 Aligned_cols=48 Identities=15% Similarity=0.070 Sum_probs=37.0
Q ss_pred HHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEec
Q 014785 84 DLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (418)
Q Consensus 84 ~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 139 (418)
.+||++|++..=++-|=.|..= + +-| +...+-+..++++||+|++|+-
T Consensus 88 ~mLkd~G~~~viiGHSERR~~f---~-Etd----~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 88 LMLKEIGTQLVMIGHSERRHKF---G-ETD----QEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred HHHHHcCCCEEEECcccccccc---C-cch----HHHHHHHHHHHHCCCEEEEEcC
Confidence 8999999999999887555421 2 223 4566778899999999999993
No 199
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=23.58 E-value=47 Score=31.84 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=40.5
Q ss_pred HHHHcCCeeEEEeccCCCchhhHhhcCCCCChHhHHHHHHHHHHHHHHhCCcceEEEEccCCccccccCccccccC
Q 014785 126 ALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFA 201 (418)
Q Consensus 126 ~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~~ 201 (418)
-+.++.+.|+++||||+.=..+ +-+....+.++.+.+=|+.--.++-.+-.-|---....+....||..-.|+
T Consensus 76 ~~~a~~~~pl~SlHH~~~~~Pi---fP~~~~~~al~~L~~a~~~d~~~~lqqsicyd~~~~wsvsVSwGYsVqvy~ 148 (255)
T PF04646_consen 76 FLEAHPLAPLVSLHHWDSVDPI---FPNMSRLQALRHLLKAAKVDPARILQQSICYDRRRNWSVSVSWGYSVQVYR 148 (255)
T ss_pred eeecCCCCceeeeeehhhcccc---CCCCCHHHHHHHHHHHHhhChHhhhheeeeccCceEEEEEEEccEEEEEEC
Confidence 3445568999999999863222 345555567777766444433333221112222223344566889876664
No 200
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=23.50 E-value=2.1e+02 Score=27.26 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=36.7
Q ss_pred HHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 84 DLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 84 ~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
++++++|++..=++-|=.|-.= | +- -+...+-+..++++||+|++|+
T Consensus 78 ~mL~d~G~~~viiGHSERR~~f---~-Et----~~~i~~Kv~~a~~~gl~pIvCi 124 (242)
T cd00311 78 EMLKDAGAKYVIIGHSERRQYF---G-ET----DEDVAKKVKAALEAGLTPILCV 124 (242)
T ss_pred HHHHHcCCCEEEeCcccccCcC---C-CC----cHHHHHHHHHHHHCCCEEEEEe
Confidence 8999999999999887444321 1 11 3567788899999999999999
No 201
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.45 E-value=2.9e+02 Score=26.80 Aligned_cols=110 Identities=13% Similarity=0.150 Sum_probs=59.7
Q ss_pred HHHHHHHHHcCCC--eeeecccccccc-----ccCC-CCccChhHHHHHHHHHHHHHHcCCeeEEEeccCC-C-c---hh
Q 014785 80 KEDIDLIAKLGFD--AYRFSISWSRIF-----PDGL-GTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD-L-P---LH 146 (418)
Q Consensus 80 ~eDi~l~~~lG~~--~~R~si~W~ri~-----p~~~-g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~-~-P---~~ 146 (418)
++=++.+++.|+. ++=+.+.|..-- .++- .-++|++-+--..++|++|++.|++.++.++-.. . | ..
T Consensus 28 ~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y 107 (292)
T cd06595 28 LALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHEDQY 107 (292)
T ss_pred HHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCcHHH
Confidence 3345555555543 555566664310 0110 1145555555578999999999999988775321 1 1 11
Q ss_pred --hHhhc------C-----CCCChHhHHHHHHHHHHHHHHhCCcceEEEEccCCccc
Q 014785 147 --LHESM------G-----GWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (418)
Q Consensus 147 --l~~~~------g-----g~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~ 190 (418)
+.... + -++||+..+.|.+-....+...|= --+|.=+|||...
T Consensus 108 ~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gi-dg~W~D~~E~~~~ 163 (292)
T cd06595 108 PEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGV-DFWWLDWQQGNRT 163 (292)
T ss_pred HHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCC-cEEEecCCCCccc
Confidence 11111 1 256777776654443333333442 2378889999764
No 202
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=23.44 E-value=2.1e+02 Score=28.76 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=44.5
Q ss_pred chHHHHHHHHHcCCCeeeeccc----ccccc----cc----C----CCCccChhHHHHHHHHHHHHHHcCCeeEEEeccC
Q 014785 78 RYKEDIDLIAKLGFDAYRFSIS----WSRIF----PD----G----LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW 141 (418)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~----W~ri~----p~----~----~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~ 141 (418)
..++-|+.|+..++|.+.+=++ | ||+ |+ | .| .+.+ +=++++|+-++++||++|.-+
T Consensus 19 ~ik~~Id~ma~~KlN~lh~HltDd~~~-rle~~~~P~Lt~~ga~~~~~-~YT~---~di~eiv~yA~~rgI~vIPEI--- 90 (348)
T cd06562 19 SIKRTIDAMAYNKLNVLHWHITDSQSF-PLESPSYPELSKKGAYSPSE-VYTP---EDVKEIVEYARLRGIRVIPEI--- 90 (348)
T ss_pred HHHHHHHHHHHhCCcEEEEeEEcCCCc-eEeeCCCchhhhccCcCCCc-eECH---HHHHHHHHHHHHcCCEEEEec---
Confidence 3567799999999998876552 3 232 21 1 12 3554 447899999999999999887
Q ss_pred CCchhhH
Q 014785 142 DLPLHLH 148 (418)
Q Consensus 142 ~~P~~l~ 148 (418)
|+|....
T Consensus 91 D~PGH~~ 97 (348)
T cd06562 91 DTPGHTG 97 (348)
T ss_pred cCchhhH
Confidence 7887643
No 203
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=23.40 E-value=46 Score=29.41 Aligned_cols=41 Identities=22% Similarity=0.444 Sum_probs=30.4
Q ss_pred ccccCCCChhHHHhhccCCCCC--ChhhHHhhcCCCCEEEeeccccc
Q 014785 278 PIYYGDYPEVMRNNLGDQLPKF--MQKDKELVRNSLDFVGLNHYTSR 322 (418)
Q Consensus 278 p~~~G~YP~~~~~~l~~~lp~~--t~~d~~~ikg~~DFiGiNYY~~~ 322 (418)
.++.|+..+.+.-+ +|+| .|.|...|..++|||.|+=++..
T Consensus 72 avl~Gkv~EqlaP~----lp~F~ynP~D~RFlG~PVD~IvF~Gls~~ 114 (156)
T PF10107_consen 72 AVLKGKVSEQLAPF----LPEFPYNPKDARFLGSPVDFIVFDGLSDG 114 (156)
T ss_pred HHHcchhHHHhhhc----cCCCCCChhhheecCCCceEEEEcCCCCC
Confidence 45567655544444 4554 79999999999999999999763
No 204
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=23.26 E-value=1.7e+02 Score=29.40 Aligned_cols=93 Identities=14% Similarity=0.160 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCCeeeeccc-c-ccccccCCCCccChhHHHHHHHHHHHHHHcCCe-eEEEeccCCCchhhHhhcCCCCC
Q 014785 80 KEDIDLIAKLGFDAYRFSIS-W-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPLHLHESMGGWLN 156 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~-W-~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~-p~~tL~h~~~P~~l~~~~gg~~~ 156 (418)
++.+++|+++|++.+-+++. = .++...- |...+ .+-+.+.++.+++.|+. +-+.|. +++|. .+
T Consensus 103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l-~R~~~---~~~~~~ai~~lr~~G~~~v~~dlI-~GlPg---------qt 168 (353)
T PRK05904 103 QSQINLLKKNKVNRISLGVQSMNNNILKQL-NRTHT---IQDSKEAINLLHKNGIYNISCDFL-YCLPI---------LK 168 (353)
T ss_pred HHHHHHHHHcCCCEEEEecccCCHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCCcEEEEEe-ecCCC---------CC
Confidence 68899999999996666652 2 1222221 31233 45677899999999997 445553 46663 12
Q ss_pred hHhHHHHHHHHHHHHHHhCCcceEEEEccCCcc
Q 014785 157 KEIVKYFEIYADTCFASFGDRVKNWITINEPLQ 189 (418)
Q Consensus 157 ~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~ 189 (418)
.+.|.+=.+.+.+.=-+.|..+...=||+.
T Consensus 169 ---~e~~~~tl~~~~~l~p~~is~y~L~~~~gT 198 (353)
T PRK05904 169 ---LKDLDEVFNFILKHKINHISFYSLEIKEGS 198 (353)
T ss_pred ---HHHHHHHHHHHHhcCCCEEEEEeeEecCCC
Confidence 344444444433222245555555446654
No 205
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=23.08 E-value=1.3e+02 Score=33.23 Aligned_cols=64 Identities=22% Similarity=0.423 Sum_probs=43.9
Q ss_pred ccchHHH-HHHHHHcCCCeeeec-c-cc-ccc-----------cccCC-CCccC-hhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 76 YHRYKED-IDLIAKLGFDAYRFS-I-SW-SRI-----------FPDGL-GTKIN-MEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 76 y~~~~eD-i~l~~~lG~~~~R~s-i-~W-~ri-----------~p~~~-g~~~n-~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
|..+.|+ +..+|+||.|++.+= | +- +.. -|... | +.+ +.-+.-.+.||+++.+.||++++.+
T Consensus 253 Y~~FteKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nFFapssrYg-t~~s~~ri~efK~lVd~aHs~GI~VlLDV 331 (757)
T KOG0470|consen 253 YLGFTEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNFFAPSSRYG-TPESPCRINEFKELVDKAHSLGIEVLLDV 331 (757)
T ss_pred hhhhhhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEeeccccccc-CCCcccchHHHHHHHHHHhhCCcEEehhh
Confidence 8888888 999999999998742 1 22 111 12211 2 221 2225668999999999999999988
Q ss_pred cc
Q 014785 139 YH 140 (418)
Q Consensus 139 ~h 140 (418)
-|
T Consensus 332 V~ 333 (757)
T KOG0470|consen 332 VH 333 (757)
T ss_pred hh
Confidence 76
No 206
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=23.05 E-value=1.7e+02 Score=30.94 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccC---CCCccChhHHHHHHHHHHHHHHcCCe-eEEEeccCCCch
Q 014785 80 KEDIDLIAKLGFDAYRFSISWSRIFPDG---LGTKINMEGITFYNNIIDALLQKGIQ-PYVTLYHWDLPL 145 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~p~~---~g~~~n~~~~~~y~~~i~~l~~~gi~-p~~tL~h~~~P~ 145 (418)
++-++.|+++|++ |+||.-...-++- -|...+ .+-..+.++.+++.|+. +-+.|. +++|.
T Consensus 269 ~e~L~~Lk~~Gv~--RISIGvQS~~d~vLk~igR~ht---~e~v~~ai~~ar~~Gf~~In~DLI-~GLPg 332 (488)
T PRK08207 269 EEKLEVLKKYGVD--RISINPQTMNDETLKAIGRHHT---VEDIIEKFHLAREMGFDNINMDLI-IGLPG 332 (488)
T ss_pred HHHHHHHHhcCCC--eEEEcCCcCCHHHHHHhCCCCC---HHHHHHHHHHHHhCCCCeEEEEEE-eCCCC
Confidence 6779999999999 5555432222211 131122 56678899999999994 445554 56664
No 207
>PLN02923 xylose isomerase
Probab=23.03 E-value=4.2e+02 Score=27.63 Aligned_cols=180 Identities=15% Similarity=0.056 Sum_probs=0.0
Q ss_pred hcccccccccccCCCCCcCcccccccc----CCCccc---cCCCCCccCccccchHHHH--HHHHHcCCCeeeecccc--
Q 014785 32 VATSAYQIEGACEEGNRGASIWDDFTH----TEGKII---DKSNGDVAVDHYHRYKEDI--DLIAKLGFDAYRFSISW-- 100 (418)
Q Consensus 32 ~atsa~Q~EG~~~~~gk~~s~wd~~~~----~~~~~~---~~~~~~~a~d~y~~~~eDi--~l~~~lG~~~~R~si~W-- 100 (418)
+++++.|.--....-|+..|..+.|.. .-++|. ..++...|--||+- +|-| +.|++ ++|||+.|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~m~~yF~~i~kI~yeG~~s~nplaf~~Ynp-~evv~GK~M~e----hlRFav~yWH 92 (478)
T PLN02923 18 SGVIAAQPPTCPADLGSKCSDSDEWEGEFFPGIPKIKYEGPSSKNPLAYKWYNA-EEEILGKKMKD----WMRFSVAFWH 92 (478)
T ss_pred HHHHhcCCCCCchhhcccccccHHHHHHhcCCCCceeeeCCCCCCCccccccCc-hhhcCCccHHH----hhhhhheeee
Q ss_pred -------------ccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCC-chhhHhhcCCCCChHhHHHHHHH
Q 014785 101 -------------SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDL-PLHLHESMGGWLNKEIVKYFEIY 166 (418)
Q Consensus 101 -------------~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~-P~~l~~~~gg~~~~~~~~~f~~y 166 (418)
.|.-|-..+...=+.+....+-.++.+.+-|+ |.+|.|--|+ |.--... .+.+..+.-.++
T Consensus 93 Tf~~~G~DpFG~~T~~rpw~~~~d~m~~A~~k~daaFEf~~kLG~-~y~cFHD~Dl~Peg~sl~----E~~~nld~ivd~ 167 (478)
T PLN02923 93 TFRGTGGDPFGAPTKYWPWEDGTNSLAMAKRRMRANFEFLKKLGV-DRWCFHDRDIAPDGKTLE----ESNANLDEVVAL 167 (478)
T ss_pred ecCCCCCCCCCCCcCCCCcccCCCHHHHHHHHHHHHHHHHHHhCC-CeEccCccccCCCCCCHH----HHHhhHHHHHHH
Q ss_pred HHHHHHHhCCcceEEEEccCCccccccCccccccCCCCCCCCCChHHHHHHHHHHHHHH
Q 014785 167 ADTCFASFGDRVKNWITINEPLQTAVNGYCTGIFAPGRHQHSSTEPYLVAHHQILAHAA 225 (418)
Q Consensus 167 a~~~~~~~~d~v~~w~t~NEp~~~~~~gy~~g~~~P~~~~~~~~~~~~~~~n~l~Aha~ 225 (418)
.+...+.-|-++. |+-+|+++.--|+.|.+.-.....-..+..|+.+.+-+++.+
T Consensus 168 ~ke~~~~TGikll----wgTaNlFshPrf~~GAaTspd~dV~ayAaaqvk~ald~t~eL 222 (478)
T PLN02923 168 AKELQEGTKIRPL----WGTAQLFKHPRYMHGAATSSEVGVYAYAAAQVKKAMEVTHYL 222 (478)
T ss_pred HHHHhHhhCceee----eeccccccCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHh
No 208
>PLN02561 triosephosphate isomerase
Probab=22.92 E-value=2e+02 Score=27.59 Aligned_cols=48 Identities=19% Similarity=0.290 Sum_probs=37.2
Q ss_pred HHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEec
Q 014785 84 DLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (418)
Q Consensus 84 ~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 139 (418)
.+++++|++..=++-|=.|..= + +-| +...+-+..++++||+|++|+-
T Consensus 82 ~mL~d~G~~~viiGHSERR~~f---~-Etd----~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 82 EMLVNLGIPWVILGHSERRALL---G-ESN----EFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred HHHHHcCCCEEEECcccccCcc---C-CCh----HHHHHHHHHHHHCcCEEEEEcC
Confidence 8999999999988887555421 2 233 5566788899999999999993
No 209
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=22.90 E-value=1.4e+02 Score=29.11 Aligned_cols=59 Identities=27% Similarity=0.385 Sum_probs=47.1
Q ss_pred hHHHHHHHHHcCCCeeeeccccccccccC-CCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 79 YKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~ri~p~~-~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
-.+|++...++|++.+-+.++=|...-.. .+ .=-++.++.+.+++..++++|+++-+++
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~-~t~~e~l~~~~~~v~~a~~~g~~v~~~~ 135 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSVSDYHIFKKLK-MTREEAMEKYLEIVEEALDHGIKPRCHL 135 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC-cCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 47999999999999998887655443332 13 3456779999999999999999998888
No 210
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=22.72 E-value=2e+02 Score=27.98 Aligned_cols=54 Identities=17% Similarity=0.326 Sum_probs=40.1
Q ss_pred CCccCccccchHHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEec
Q 014785 69 GDVAVDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLY 139 (418)
Q Consensus 69 ~~~a~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~ 139 (418)
.|-+|-.-..|..|+++++.-+. .+|.= | -| ..-..++..++.+.|++.++.++
T Consensus 55 ~dGtCKSa~~~~sDLe~l~~~t~-~IR~Y-----------~--sD---Cn~le~v~pAa~~~g~kv~lGiw 108 (305)
T COG5309 55 DDGTCKSADQVASDLELLASYTH-SIRTY-----------G--SD---CNTLENVLPAAEASGFKVFLGIW 108 (305)
T ss_pred CCCCCcCHHHHHhHHHHhccCCc-eEEEe-----------e--cc---chhhhhhHHHHHhcCceEEEEEe
Confidence 33478888899999999998886 55531 1 12 22355888999999999999984
No 211
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=22.60 E-value=3.5e+02 Score=25.80 Aligned_cols=92 Identities=15% Similarity=0.211 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCC--eeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCCh
Q 014785 80 KEDIDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNK 157 (418)
Q Consensus 80 ~eDi~l~~~lG~~--~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~ 157 (418)
.+-++.+++.|+. ++=+.+.|..-.-.- +-++|++-+.--.++|+.|+++|++.++.+. |.-
T Consensus 27 ~~~~~~~~~~~iP~d~~~lD~~~~~~~~~f-~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~----P~v----------- 90 (265)
T cd06589 27 LEVIDGMRENDIPLDGFVLDDDYTDGYGDF-TFDWDAGKFPNPKSMIDELHDNGVKLVLWID----PYI----------- 90 (265)
T ss_pred HHHHHHHHHcCCCccEEEECcccccCCcee-eeecChhhCCCHHHHHHHHHHCCCEEEEEeC----hhH-----------
Confidence 4455666665544 555555554321110 0134444455567899999999999998773 321
Q ss_pred HhHHHHHHHHHHHHHHhCCcceEEEEccCCccc
Q 014785 158 EIVKYFEIYADTCFASFGDRVKNWITINEPLQT 190 (418)
Q Consensus 158 ~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~ 190 (418)
.+.|.+..+.+....|= --+|+=+|||...
T Consensus 91 --~~w~~~~~~~~~~~~Gv-dg~w~D~~E~~~~ 120 (265)
T cd06589 91 --REWWAEVVKKLLVSLGV-DGFWTDMGEPSPG 120 (265)
T ss_pred --HHHHHHHHHHhhccCCC-CEEeccCCCCCcC
Confidence 45565555544333332 2478889999865
No 212
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=22.49 E-value=2.3e+02 Score=24.30 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=38.9
Q ss_pred hHHHHHHHHHcCCCeeeeccccc-cccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 79 YKEDIDLIAKLGFDAYRFSISWS-RIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W~-ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
-+++++.|+++|+..+.+|++-. ...-.... -....++.+-+.|+.+++.|+...+++
T Consensus 87 ~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~ 145 (204)
T cd01335 87 TEELLKELKELGLDGVGVSLDSGDEEVADKIR--GSGESFKERLEALKELREAGLGLSTTL 145 (204)
T ss_pred CHHHHHHHHhCCCceEEEEcccCCHHHHHHHh--cCCcCHHHHHHHHHHHHHcCCCceEEE
Confidence 37899999999999999999632 22111000 011125677888888898888877665
No 213
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=22.35 E-value=2.9e+02 Score=27.47 Aligned_cols=95 Identities=19% Similarity=0.244 Sum_probs=59.9
Q ss_pred cchHHHHHHHHHcCCCeeeecc--ccccccc-----cC--CCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCC-----
Q 014785 77 HRYKEDIDLIAKLGFDAYRFSI--SWSRIFP-----DG--LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD----- 142 (418)
Q Consensus 77 ~~~~eDi~l~~~lG~~~~R~si--~W~ri~p-----~~--~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~----- 142 (418)
.+.++=++++++.|+|++=+.+ ++-.|.= .. .| . ....+.=...+++.|+++||-||.-+.-|-
T Consensus 13 ~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~g-a-~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la 90 (316)
T PF13200_consen 13 ERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIG-A-VKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLA 90 (316)
T ss_pred HHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcc-c-ccccccCHHHHHHHHHHCCCEEEEEEEEecChHHh
Confidence 3567889999999999999887 4444421 11 02 1 111124477899999999999998776542
Q ss_pred --CchhhHhhcC----------CCCCh---HhHHHHHHHHHHHHHH
Q 014785 143 --LPLHLHESMG----------GWLNK---EIVKYFEIYADTCFAS 173 (418)
Q Consensus 143 --~P~~l~~~~g----------g~~~~---~~~~~f~~ya~~~~~~ 173 (418)
.|.|....-+ .|.|| ++.+.-.+-|+.+++.
T Consensus 91 ~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 91 EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 2444321111 27654 5667777777776644
No 214
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.27 E-value=2.4e+02 Score=28.36 Aligned_cols=63 Identities=22% Similarity=0.403 Sum_probs=43.5
Q ss_pred chHHHHHHHHHcCCCeeeeccc----c-------ccccccC--------------------CCCccChhHHHHHHHHHHH
Q 014785 78 RYKEDIDLIAKLGFDAYRFSIS----W-------SRIFPDG--------------------LGTKINMEGITFYNNIIDA 126 (418)
Q Consensus 78 ~~~eDi~l~~~lG~~~~R~si~----W-------~ri~p~~--------------------~g~~~n~~~~~~y~~~i~~ 126 (418)
..++-|+.|+..++|.+.+-++ | +.+-..| .| .+. -+=++++++.
T Consensus 19 ~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~-~YT---~~di~eiv~y 94 (357)
T cd06563 19 EVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGG-FYT---QEEIREIVAY 94 (357)
T ss_pred HHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCc-eEC---HHHHHHHHHH
Confidence 3567799999999998876552 2 2221111 02 354 3457899999
Q ss_pred HHHcCCeeEEEeccCCCchhh
Q 014785 127 LLQKGIQPYVTLYHWDLPLHL 147 (418)
Q Consensus 127 l~~~gi~p~~tL~h~~~P~~l 147 (418)
++++||++|.-+ |+|...
T Consensus 95 A~~rgI~VIPEI---D~PGH~ 112 (357)
T cd06563 95 AAERGITVIPEI---DMPGHA 112 (357)
T ss_pred HHHcCCEEEEec---CCchhH
Confidence 999999999876 677654
No 215
>PRK08508 biotin synthase; Provisional
Probab=22.23 E-value=1.8e+02 Score=28.09 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=39.5
Q ss_pred hHHHHHHHHHcCCCeeeecccc-ccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 79 YKEDIDLIAKLGFDAYRFSISW-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 79 ~~eDi~l~~~lG~~~~R~si~W-~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
.+|.++.||++|++++-..++= ++++|.-.. .-+ ++..-+.+..+++.||++--++
T Consensus 101 ~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~-~~~---~~~~l~~i~~a~~~Gi~v~sg~ 157 (279)
T PRK08508 101 SVEQLKELKKAGIFSYNHNLETSKEFFPKICT-THT---WEERFQTCENAKEAGLGLCSGG 157 (279)
T ss_pred CHHHHHHHHHcCCCEEcccccchHHHhcCCCC-CCC---HHHHHHHHHHHHHcCCeeccee
Confidence 4899999999999999988632 446665411 222 5556667888999999765444
No 216
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=21.93 E-value=3.7e+02 Score=27.39 Aligned_cols=95 Identities=9% Similarity=-0.006 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCCeeeecc-cc-ccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCCh
Q 014785 80 KEDIDLIAKLGFDAYRFSI-SW-SRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNK 157 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si-~W-~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~ 157 (418)
++.++.|+++|+|-+-+++ += .+++..- | ... ..+-..+.++.+++.++.+-+.|. +++|.-
T Consensus 111 ~e~l~~l~~~GvnRiSiGvQS~~d~~L~~l-g-R~h--~~~~~~~ai~~~~~~~~~v~~DlI-~GlPgq----------- 174 (390)
T PRK06582 111 TEKFKAFKLAGINRVSIGVQSLKEDDLKKL-G-RTH--DCMQAIKTIEAANTIFPRVSFDLI-YARSGQ----------- 174 (390)
T ss_pred HHHHHHHHHCCCCEEEEECCcCCHHHHHHc-C-CCC--CHHHHHHHHHHHHHhCCcEEEEee-cCCCCC-----------
Confidence 5899999999999777766 22 2222221 3 221 134455677888888777888876 566641
Q ss_pred HhHHHHHHHHHHHHHHhCCcceEEEEccCCcccc
Q 014785 158 EIVKYFEIYADTCFASFGDRVKNWITINEPLQTA 191 (418)
Q Consensus 158 ~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~~~~ 191 (418)
+.+.+.+=++.+.+-=-++|..+...=||+...
T Consensus 175 -t~e~~~~~l~~~~~l~p~his~y~L~i~~gT~l 207 (390)
T PRK06582 175 -TLKDWQEELKQAMQLATSHISLYQLTIEKGTPF 207 (390)
T ss_pred -CHHHHHHHHHHHHhcCCCEEEEecCEEccCChH
Confidence 133344444444443346677777666776543
No 217
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=21.87 E-value=2.2e+02 Score=25.81 Aligned_cols=94 Identities=15% Similarity=0.160 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcC-CeeEEEeccCCCchhhHhhcCCCCChH
Q 014785 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKG-IQPYVTLYHWDLPLHLHESMGGWLNKE 158 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~g-i~p~~tL~h~~~P~~l~~~~gg~~~~~ 158 (418)
++=.++|+++--+.+-+.+.-. ++. . .+ .+....+|+.+++.. -+||+.+-|...|....+. ...+
T Consensus 49 ~~~a~~ia~~~a~~~~ld~~~N---~~~-~-~~----~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~----~~~~ 115 (178)
T PF14606_consen 49 PEVADLIAEIDADLIVLDCGPN---MSP-E-EF----RERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDN----SRGE 115 (178)
T ss_dssp HHHHHHHHHS--SEEEEEESHH---CCT-T-TH----HHHHHHHHHHHHTT-SSS-EEEEE----TTTTS------TTS-
T ss_pred HHHHHHHhcCCCCEEEEEeecC---CCH-H-HH----HHHHHHHHHHHHHhCCCCCEEEEecCCccccccCc----hHHH
Confidence 4556888888777777766544 222 2 34 367888999999987 8999999887777653322 2245
Q ss_pred hHHHHHHHHHHHHHHh---CCcceEEEEccC
Q 014785 159 IVKYFEIYADTCFASF---GDRVKNWITINE 186 (418)
Q Consensus 159 ~~~~f~~ya~~~~~~~---~d~v~~w~t~NE 186 (418)
..+.+.+-.+.+++.+ |++=-|++.-.|
T Consensus 116 ~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~ 146 (178)
T PF14606_consen 116 TVEEFREALREAVEQLRKEGDKNLYYLDGEE 146 (178)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-TTEEEE-HHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcEEEeCchh
Confidence 6788888888888888 777667776665
No 218
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=21.79 E-value=88 Score=18.83 Aligned_cols=15 Identities=20% Similarity=0.594 Sum_probs=12.3
Q ss_pred HHHHHHHHHHcCCee
Q 014785 120 YNNIIDALLQKGIQP 134 (418)
Q Consensus 120 y~~~i~~l~~~gi~p 134 (418)
-.++++.+++.||+|
T Consensus 20 a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 20 ALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHhCCCC
Confidence 467888888899987
No 219
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=21.69 E-value=2.2e+02 Score=26.40 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=35.1
Q ss_pred HHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEe
Q 014785 84 DLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTL 138 (418)
Q Consensus 84 ~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL 138 (418)
.++|++|++..=++-|=.| +.+ =| ..+-+..++++||+|++|+
T Consensus 75 ~mLkd~G~~~viiGHSERR-f~E-----td------i~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 75 EMLKDIGAKGTLINHSERR-MKL-----AD------IEKKIARLKELGLTSVVCT 117 (205)
T ss_pred HHHHHcCCCEEEECcccCC-CCc-----cH------HHHHHHHHHHCCCEEEEEE
Confidence 8999999999999888666 322 12 4677889999999999999
No 220
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=21.69 E-value=1.9e+02 Score=33.87 Aligned_cols=66 Identities=15% Similarity=0.330 Sum_probs=41.9
Q ss_pred ccccchHHHHHHHHHcCCCeeeecc--ccccc-----------------------------cccCC-CCcc-Ch-hHHHH
Q 014785 74 DHYHRYKEDIDLIAKLGFDAYRFSI--SWSRI-----------------------------FPDGL-GTKI-NM-EGITF 119 (418)
Q Consensus 74 d~y~~~~eDi~l~~~lG~~~~R~si--~W~ri-----------------------------~p~~~-g~~~-n~-~~~~~ 119 (418)
..|.-.-+-|+-||+||++++-+.= +...+ -|++. |..+ +. ..++-
T Consensus 477 Gtf~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~E 556 (1111)
T TIGR02102 477 GTFAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAE 556 (1111)
T ss_pred cCHHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHH
Confidence 3455566779999999999998662 21111 01110 0000 00 12567
Q ss_pred HHHHHHHHHHcCCeeEEEec
Q 014785 120 YNNIIDALLQKGIQPYVTLY 139 (418)
Q Consensus 120 y~~~i~~l~~~gi~p~~tL~ 139 (418)
+++||++|+++||++|+.+-
T Consensus 557 fK~LV~alH~~GI~VILDVV 576 (1111)
T TIGR02102 557 FKNLINEIHKRGMGVILDVV 576 (1111)
T ss_pred HHHHHHHHHHCCCEEEEecc
Confidence 99999999999999999854
No 221
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=21.39 E-value=2e+02 Score=30.58 Aligned_cols=67 Identities=18% Similarity=0.329 Sum_probs=38.0
Q ss_pred HHHHHHHHc--CCeeEEEeccCCCchhhHhh---c-CCCCC----hHhHHHHHHHHHHHHHHhCCc-ceE--EEEccCCc
Q 014785 122 NIIDALLQK--GIQPYVTLYHWDLPLHLHES---M-GGWLN----KEIVKYFEIYADTCFASFGDR-VKN--WITINEPL 188 (418)
Q Consensus 122 ~~i~~l~~~--gi~p~~tL~h~~~P~~l~~~---~-gg~~~----~~~~~~f~~ya~~~~~~~~d~-v~~--w~t~NEp~ 188 (418)
.+|.++++. +|+.+.+- |..|.|+-.. . +|.+. ++.-+.||+|--+.++.|... |+. -.+-|||.
T Consensus 157 p~ik~a~~~~~~lki~aSp--WSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~ 234 (496)
T PF02055_consen 157 PLIKEALAINPNLKIFASP--WSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPD 234 (496)
T ss_dssp HHHHHHHHHHTT-EEEEEE--S---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCC
T ss_pred HHHHHHHHhCCCcEEEEec--CCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCC
Confidence 466666553 47777666 9999998532 1 24443 345566777777777777553 444 45889998
Q ss_pred cc
Q 014785 189 QT 190 (418)
Q Consensus 189 ~~ 190 (418)
..
T Consensus 235 ~~ 236 (496)
T PF02055_consen 235 NG 236 (496)
T ss_dssp GG
T ss_pred CC
Confidence 64
No 222
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=21.32 E-value=2.7e+02 Score=26.83 Aligned_cols=58 Identities=12% Similarity=0.045 Sum_probs=40.6
Q ss_pred HHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchh
Q 014785 83 IDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLH 146 (418)
Q Consensus 83 i~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~ 146 (418)
++++.+++=..--+=+.+.-++. ...++++-+.++++.+++.|..+|+.+=+.|+|.-
T Consensus 44 ~~ii~~l~~~v~~vK~g~~lf~~------~G~~gi~~l~~~~~~~~~~g~~VilD~K~~DIpnT 101 (261)
T TIGR02127 44 LRIIDATAEYAAVVKPQVAFFER------FGSEGFKALEEVIAHARSLGLPVLADVKRGDIGST 101 (261)
T ss_pred HHHHHhcCCcceEEecCHHHHHh------cCHHHHHHHHHHHHHHHHCCCeEEEEeeccChHHH
Confidence 35666665333223334433432 33567888999999999999999999999999964
No 223
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=21.17 E-value=45 Score=25.48 Aligned_cols=19 Identities=32% Similarity=0.721 Sum_probs=16.3
Q ss_pred CccccchH--HHHHHHHHcCC
Q 014785 73 VDHYHRYK--EDIDLIAKLGF 91 (418)
Q Consensus 73 ~d~y~~~~--eDi~l~~~lG~ 91 (418)
.|||..|. +|.+.|+++|+
T Consensus 46 adFYknYD~~kdFerM~~~G~ 66 (70)
T cd00927 46 ADFYKTYDAMKDFERMRKAGL 66 (70)
T ss_pred HHHHHccChHHHHHHHHHcCC
Confidence 68888875 78999999996
No 224
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=20.98 E-value=1.3e+02 Score=26.36 Aligned_cols=55 Identities=20% Similarity=0.272 Sum_probs=38.7
Q ss_pred ccCccccchHHHHH-HHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeE
Q 014785 71 VAVDHYHRYKEDID-LIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPY 135 (418)
Q Consensus 71 ~a~d~y~~~~eDi~-l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~ 135 (418)
.+|......++||. .++++|+..+++.+.|+----. + -+.++| -..|+++||.|=
T Consensus 36 ~gcpa~e~L~~~I~~aL~~~Gv~~V~V~i~~~p~Wt~--d-~it~~g-------r~~l~~~giapp 91 (146)
T TIGR02159 36 SGCPALEVIRQDIRDAVRALGVEVVEVSTSLDPPWTT--D-WITEDA-------REKLREYGIAPP 91 (146)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCeEEEeEeeCCCCCh--H-HCCHHH-------HHHHHhcCccCC
Confidence 35777778888874 4777899999988887544322 3 566655 356889999873
No 225
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=20.55 E-value=3e+02 Score=33.11 Aligned_cols=72 Identities=14% Similarity=0.324 Sum_probs=50.0
Q ss_pred CccccchHHHHHHHHHcCCCeeeeccccccccccC-CCC--------ccCh------hHHHHHHHHHHHHHHc-CCeeEE
Q 014785 73 VDHYHRYKEDIDLIAKLGFDAYRFSISWSRIFPDG-LGT--------KINM------EGITFYNNIIDALLQK-GIQPYV 136 (418)
Q Consensus 73 ~d~y~~~~eDi~l~~~lG~~~~R~si~W~ri~p~~-~g~--------~~n~------~~~~~y~~~i~~l~~~-gi~p~~ 136 (418)
...+..|++.++.++++|+|++-|. -|+|.| .++ ++|+ .+.+-..++|+.+++. ||..|+
T Consensus 128 mG~~~~w~~~L~~ik~lGyN~Ihft----PI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~~d~~~lV~~~h~~~Gm~~il 203 (1464)
T TIGR01531 128 LGPLSEWEPRLRVAKEKGYNMIHFT----PLQELGGSNSCYSLYDQLQLNQHFKSQKDGKNDVQALVEKLHRDWNVLSIT 203 (1464)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEeC----CCccCCCCCCCccccchhhcChhhcccCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 4456789999999999999998875 233333 111 2222 2455678999999996 999998
Q ss_pred E--ecc--CCCchhhHh
Q 014785 137 T--LYH--WDLPLHLHE 149 (418)
Q Consensus 137 t--L~h--~~~P~~l~~ 149 (418)
. +.| ++.| ||.+
T Consensus 204 DvV~NHTa~ds~-Wl~e 219 (1464)
T TIGR01531 204 DIVFNHTANNSP-WLLE 219 (1464)
T ss_pred EeeecccccCCH-HHHh
Confidence 6 456 5554 6764
No 226
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=20.32 E-value=2e+02 Score=32.03 Aligned_cols=59 Identities=27% Similarity=0.411 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCC-C------CccChh--HHHHHHHHHHHHHHcCCeeEEEec
Q 014785 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGL-G------TKINME--GITFYNNIIDALLQKGIQPYVTLY 139 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~-g------~~~n~~--~~~~y~~~i~~l~~~gi~p~~tL~ 139 (418)
.+-++-+++||+.++=.|=-|.-. |-.+ | +++|++ |.+-+.+++.++++.||-.|+.+-
T Consensus 22 ~~~l~yl~~LGIShLY~SPIftA~-pGStHGYDVvD~t~InPeLGG~egl~rLvaalk~~GlGlI~DIV 89 (889)
T COG3280 22 RALLDYLADLGISHLYLSPIFTAR-PGSTHGYDVVDPTEINPELGGEEGLERLVAALKSRGLGLIVDIV 89 (889)
T ss_pred HHhhHHHHhcCchheeccchhhcC-CCCCCCccCCCccccChhhcChHHHHHHHHHHHhcCCceEEEec
Confidence 567889999999988877444222 1000 1 123332 466789999999999999999883
No 227
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=20.19 E-value=2e+02 Score=28.83 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCCCChHh
Q 014785 80 KEDIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGWLNKEI 159 (418)
Q Consensus 80 ~eDi~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~~~~~~ 159 (418)
.+|++...+.|++.+|+...+++. +--.+.|+.+++.|++..+++..- + +..
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~--------------~~~~~~i~~ak~~G~~v~~~l~~a-----------~---~~~ 142 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEA--------------DVSEQHIGLARELGMDTVGFLMMS-----------H---MAP 142 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchH--------------HHHHHHHHHHHHCCCeEEEEEEec-----------c---CCC
Confidence 589999999999999998754332 224788999999999999988531 1 113
Q ss_pred HHHHHHHHHHHHHHhCC
Q 014785 160 VKYFEIYADTCFASFGD 176 (418)
Q Consensus 160 ~~~f~~ya~~~~~~~~d 176 (418)
.+.+.+.++.+ ..+|-
T Consensus 143 ~e~l~~~a~~~-~~~Ga 158 (337)
T PRK08195 143 PEKLAEQAKLM-ESYGA 158 (337)
T ss_pred HHHHHHHHHHH-HhCCC
Confidence 46666777775 34653
No 228
>PF06777 DUF1227: Protein of unknown function (DUF1227); InterPro: IPR010643 This domain represents a conserved region within a number of eukaryotic DNA repair helicases.; GO: 0005634 nucleus
Probab=20.18 E-value=1.8e+02 Score=25.52 Aligned_cols=68 Identities=16% Similarity=0.124 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHcCCeeE--EEeccCCCchhhHhhcCCCCChHhHHHHHHHHHHHHHHhCCcceEEEEccC
Q 014785 118 TFYNNIIDALLQKGIQPY--VTLYHWDLPLHLHESMGGWLNKEIVKYFEIYADTCFASFGDRVKNWITINE 186 (418)
Q Consensus 118 ~~y~~~i~~l~~~gi~p~--~tL~h~~~P~~l~~~~gg~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NE 186 (418)
+-|+++++.|+..++..- ..+.+--+|..+-++ -=-.|=..++.|..|-+++++-++.+++--.+..|
T Consensus 16 ~EY~rLV~GL~~~~~~~~~d~~~~npvLp~dil~e-aVPGnIR~AeHFv~flkR~veylk~rlrv~~v~~e 85 (146)
T PF06777_consen 16 DEYDRLVEGLREAEIARETDEILANPVLPDDILKE-AVPGNIRRAEHFVAFLKRFVEYLKTRLRVQHVISE 85 (146)
T ss_pred HHHHHHHHHHHHhccccccchhhcCCCCchhhhhh-cCCchHHhHHHHHHHHHHHHHHHHHHhhhcceeec
Confidence 469999999999986533 234455567766543 11123334688888888888888888766666665
No 229
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=20.14 E-value=1.7e+02 Score=27.96 Aligned_cols=80 Identities=18% Similarity=0.091 Sum_probs=52.7
Q ss_pred HHHHHHHHHcC----CCeeeeccccccccccC-CCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCCCchhhHhhcCCC
Q 014785 80 KEDIDLIAKLG----FDAYRFSISWSRIFPDG-LGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWDLPLHLHESMGGW 154 (418)
Q Consensus 80 ~eDi~l~~~lG----~~~~R~si~W~ri~p~~-~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~~P~~l~~~~gg~ 154 (418)
.+|+++..+.| ++.+|+.++.|.+.-.. .+ .=.++.++-..+++..+++.|++..++. |. .+.
T Consensus 72 ~~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~-~~~~~~~~~~~~~i~~a~~~G~~v~~~~-----~~------~~~ 139 (268)
T cd07940 72 KKDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLK-KTREEVLERAVEAVEYAKSHGLDVEFSA-----ED------ATR 139 (268)
T ss_pred HhhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhC-CCHHHHHHHHHHHHHHHHHcCCeEEEee-----ec------CCC
Confidence 78999999999 99999987655443221 12 2223457888899999999999876443 32 222
Q ss_pred CChHhHHHHHHHHHHHHHHhC
Q 014785 155 LNKEIVKYFEIYADTCFASFG 175 (418)
Q Consensus 155 ~~~~~~~~f~~ya~~~~~~~~ 175 (418)
. ..+.+.+.++.+.+ +|
T Consensus 140 ~---~~~~~~~~~~~~~~-~G 156 (268)
T cd07940 140 T---DLDFLIEVVEAAIE-AG 156 (268)
T ss_pred C---CHHHHHHHHHHHHH-cC
Confidence 2 35556677776643 44
No 230
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=20.13 E-value=1.8e+02 Score=28.22 Aligned_cols=56 Identities=18% Similarity=0.292 Sum_probs=46.4
Q ss_pred HHHHHHHcCCCeeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccCC
Q 014785 82 DIDLIAKLGFDAYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHWD 142 (418)
Q Consensus 82 Di~l~~~lG~~~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~~ 142 (418)
+-+.+|+.|-++..|=+=|.- ++ . ++|+.-+++.+++..+|.+.+|--++-...++
T Consensus 116 sa~riK~~G~~avK~Lvy~~~---D~-~-e~neqk~a~ierigsec~aedi~f~lE~ltyd 171 (306)
T COG3684 116 SAKRIKEDGGDAVKFLVYYRS---DE-D-EINEQKLAYIERIGSECHAEDLPFFLEPLTYD 171 (306)
T ss_pred CHHHHHHhcccceEEEEEEcC---Cc-h-HHhHHHHHHHHHHHHHhhhcCCceeEeeeecC
Confidence 358999999999999998853 22 2 68999999999999999999998887765443
No 231
>PRK10658 putative alpha-glucosidase; Provisional
Probab=20.09 E-value=6.8e+02 Score=27.66 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=63.2
Q ss_pred HHHHHHcCCC--eeeeccccccccccCCCCccChhHHHHHHHHHHHHHHcCCeeEEEeccC---CCchhhHhh---c---
Q 014785 83 IDLIAKLGFD--AYRFSISWSRIFPDGLGTKINMEGITFYNNIIDALLQKGIQPYVTLYHW---DLPLHLHES---M--- 151 (418)
Q Consensus 83 i~l~~~lG~~--~~R~si~W~ri~p~~~g~~~n~~~~~~y~~~i~~l~~~gi~p~~tL~h~---~~P~~l~~~---~--- 151 (418)
++.+++.|+. ++-+.+.|.+-.--..- ++|++-+---..||++|++.|++.++.+.-+ +.|.+-+.. |
T Consensus 289 ~~~~r~~~iP~d~i~lD~~w~~~~~~~~f-~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~vk 367 (665)
T PRK10658 289 IDGMAERDLPLHVFHFDCFWMKEFQWCDF-EWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLLK 367 (665)
T ss_pred HHHHHHcCCCceEEEEchhhhcCCceeee-EEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEEE
Confidence 5677777764 67777777553211111 4454444445789999999999998876532 222221110 0
Q ss_pred -------------C-----CCCChHhHHHHHHHHHHHHHHhCCcceEEEEccCCc
Q 014785 152 -------------G-----GWLNKEIVKYFEIYADTCFASFGDRVKNWITINEPL 188 (418)
Q Consensus 152 -------------g-----g~~~~~~~~~f~~ya~~~~~~~~d~v~~w~t~NEp~ 188 (418)
| -++||+..++|.+..+.+.+ .|=. -+|.=+||+.
T Consensus 368 ~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d-~Gvd-gfw~D~gE~~ 420 (665)
T PRK10658 368 RPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD-MGVD-CFKTDFGERI 420 (665)
T ss_pred CCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh-cCCc-EEEecCCcee
Confidence 1 16899999999988887554 4422 3677788863
Done!