Query 014788
Match_columns 418
No_of_seqs 269 out of 779
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 17:50:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014788.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014788hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fq3_A Transcription regulator 100.0 1.4E-41 4.6E-46 287.1 10.7 94 38-131 9-102 (104)
2 2dce_A KIAA1915 protein; swirm 100.0 5.7E-41 1.9E-45 286.9 7.9 93 38-131 11-105 (111)
3 2yus_A SWI/SNF-related matrix- 99.7 1.6E-16 5.5E-21 128.1 9.1 54 211-264 16-69 (79)
4 2elk_A SPCC24B10.08C protein; 99.4 1.3E-13 4.5E-18 104.5 6.5 49 212-260 8-58 (58)
5 1x41_A Transcriptional adaptor 99.3 1E-12 3.6E-17 100.1 6.4 50 212-261 7-57 (60)
6 2cqr_A RSGI RUH-043, DNAJ homo 99.3 3.2E-12 1.1E-16 101.5 5.1 64 199-263 4-71 (73)
7 1gvd_A MYB proto-oncogene prot 99.1 5.9E-11 2E-15 87.5 5.8 45 213-257 3-48 (52)
8 1guu_A C-MYB, MYB proto-oncoge 99.1 5.9E-11 2E-15 87.4 5.6 45 213-257 3-48 (52)
9 1w0t_A Telomeric repeat bindin 99.1 1.2E-10 4E-15 86.4 5.9 45 213-257 2-49 (53)
10 2d9a_A B-MYB, MYB-related prot 99.1 1.3E-10 4.5E-15 88.1 6.3 46 212-257 7-53 (60)
11 2cu7_A KIAA1915 protein; nucle 99.1 1.2E-10 4E-15 91.7 5.8 46 212-257 8-53 (72)
12 2yum_A ZZZ3 protein, zinc fing 99.1 7.4E-11 2.5E-15 93.4 4.2 45 212-256 7-57 (75)
13 1wgx_A KIAA1903 protein; MYB D 99.0 2.3E-10 7.9E-15 90.7 5.8 46 213-258 8-57 (73)
14 2dim_A Cell division cycle 5-l 99.0 3.2E-10 1.1E-14 88.6 6.5 46 212-257 8-54 (70)
15 3sjm_A Telomeric repeat-bindin 99.0 4.3E-10 1.5E-14 86.9 5.9 45 213-257 11-58 (64)
16 1ity_A TRF1; helix-turn-helix, 99.0 6.6E-10 2.3E-14 86.6 5.9 46 212-257 9-57 (69)
17 2eqr_A N-COR1, N-COR, nuclear 98.9 2.5E-09 8.6E-14 81.7 6.4 45 212-256 11-55 (61)
18 2din_A Cell division cycle 5-l 98.9 2E-09 6.9E-14 83.1 4.9 45 212-257 8-52 (66)
19 2cjj_A Radialis; plant develop 98.8 2.2E-09 7.6E-14 88.9 5.1 46 212-257 7-56 (93)
20 2ltp_A Nuclear receptor corepr 98.3 3.3E-10 1.1E-14 92.9 0.0 46 212-257 15-60 (89)
21 2llk_A Cyclin-D-binding MYB-li 98.8 5.4E-09 1.8E-13 82.9 6.5 46 211-257 21-66 (73)
22 2iw5_B Protein corest, REST co 98.8 7.2E-09 2.5E-13 97.9 6.9 46 211-256 131-176 (235)
23 2k9n_A MYB24; R2R3 domain, DNA 98.8 7.1E-09 2.4E-13 87.2 5.8 43 214-256 2-45 (107)
24 1gv2_A C-MYB, MYB proto-oncoge 98.7 1.1E-08 3.7E-13 85.5 6.1 46 212-257 3-49 (105)
25 2k9n_A MYB24; R2R3 domain, DNA 98.7 1.2E-08 3.9E-13 85.9 5.8 46 212-257 52-97 (107)
26 1gv2_A C-MYB, MYB proto-oncoge 98.7 1.3E-08 4.5E-13 84.9 5.4 46 212-257 55-100 (105)
27 3osg_A MYB21; transcription-DN 98.7 1.6E-08 5.5E-13 87.5 6.0 45 212-256 10-54 (126)
28 3osg_A MYB21; transcription-DN 98.7 1.5E-08 5E-13 87.7 5.2 45 212-256 61-105 (126)
29 2ckx_A NGTRF1, telomere bindin 98.7 2.1E-08 7.2E-13 81.3 5.7 44 214-257 1-49 (83)
30 4gut_A Lysine-specific histone 98.7 4.5E-08 1.6E-12 107.6 10.1 91 35-131 212-321 (776)
31 1h8a_C AMV V-MYB, MYB transfor 98.7 3.2E-08 1.1E-12 85.6 6.9 45 212-256 26-71 (128)
32 1h8a_C AMV V-MYB, MYB transfor 98.6 3.4E-08 1.2E-12 85.4 6.4 46 212-257 78-123 (128)
33 3zqc_A MYB3; transcription-DNA 98.6 1.5E-08 5.1E-13 88.1 3.9 44 213-256 2-46 (131)
34 3zqc_A MYB3; transcription-DNA 98.6 3.8E-08 1.3E-12 85.6 5.4 45 213-257 54-98 (131)
35 2z3y_A Lysine-specific histone 98.6 3.9E-08 1.3E-12 105.7 6.1 85 45-131 8-96 (662)
36 2yqk_A Arginine-glutamic acid 98.5 1.8E-07 6.1E-12 71.9 6.7 44 212-255 8-52 (63)
37 2xag_B REST corepressor 1; ami 98.5 1.4E-07 4.9E-12 98.0 6.8 45 212-256 379-423 (482)
38 1h89_C C-MYB, MYB proto-oncoge 98.4 1.9E-07 6.5E-12 83.5 6.0 46 212-257 109-154 (159)
39 2cqq_A RSGI RUH-037, DNAJ homo 98.4 2E-07 6.8E-12 73.6 5.0 48 213-262 8-59 (72)
40 2roh_A RTBP1, telomere binding 98.4 2.7E-07 9.1E-12 79.9 5.9 46 212-257 30-80 (122)
41 2aje_A Telomere repeat-binding 98.4 2.3E-07 7.9E-12 78.4 4.9 46 212-257 12-62 (105)
42 1h89_C C-MYB, MYB proto-oncoge 98.4 3.7E-07 1.3E-11 81.6 6.5 46 212-257 57-103 (159)
43 2crg_A Metastasis associated p 98.3 5.7E-07 1.9E-11 70.5 5.8 52 212-263 7-59 (70)
44 2juh_A Telomere binding protei 98.3 3.7E-07 1.2E-11 78.9 4.7 46 212-257 16-66 (121)
45 4a69_C Nuclear receptor corepr 98.2 1.3E-06 4.3E-11 72.3 5.9 45 212-256 42-86 (94)
46 4eef_G F-HB80.4, designed hema 98.2 1.4E-07 4.8E-12 74.5 -0.1 43 213-255 20-66 (74)
47 1x58_A Hypothetical protein 49 98.1 2.4E-06 8.1E-11 65.5 4.7 46 212-257 7-55 (62)
48 1ign_A Protein (RAP1); RAP1,ye 97.8 9.3E-06 3.2E-10 77.4 4.1 46 212-257 7-58 (246)
49 2xag_A Lysine-specific histone 97.8 2.6E-05 8.9E-10 86.6 6.8 86 44-131 178-267 (852)
50 3hm5_A DNA methyltransferase 1 97.1 0.0007 2.4E-08 55.8 5.5 44 213-256 30-78 (93)
51 1ug2_A 2610100B20RIK gene prod 96.9 0.0013 4.6E-08 53.8 5.4 44 214-257 34-80 (95)
52 2ebi_A DNA binding protein GT- 96.6 0.001 3.5E-08 53.4 3.1 45 213-257 4-62 (86)
53 2cuj_A Transcriptional adaptor 96.5 0.0063 2.2E-07 51.4 7.6 70 50-127 37-106 (108)
54 2aqe_A Transcriptional adaptor 96.5 0.0052 1.8E-07 50.2 6.5 70 50-127 19-88 (90)
55 2elj_A Transcriptional adapter 96.3 0.0094 3.2E-07 48.5 7.0 70 50-126 19-88 (88)
56 1fex_A TRF2-interacting telome 96.3 0.0036 1.2E-07 47.3 3.9 44 213-256 2-55 (59)
57 2lr8_A CAsp8-associated protei 95.0 0.0012 4E-08 51.4 0.0 44 213-257 14-60 (70)
58 1ofc_X ISWI protein; nuclear p 95.9 0.0068 2.3E-07 59.8 5.1 41 214-254 111-152 (304)
59 2xag_B REST corepressor 1; ami 95.8 0.0014 4.9E-08 68.2 0.0 49 213-261 189-237 (482)
60 4iej_A DNA methyltransferase 1 95.4 0.021 7.2E-07 47.0 5.5 44 213-256 30-78 (93)
61 2e5r_A Dystrobrevin alpha; ZZ 95.4 0.0095 3.2E-07 45.5 3.1 47 161-207 12-61 (63)
62 2dip_A Zinc finger SWIM domain 95.0 0.0048 1.6E-07 51.3 0.5 54 160-220 31-86 (98)
63 2fc7_A ZZZ3 protein; structure 94.4 0.037 1.2E-06 44.4 4.2 50 160-209 21-76 (82)
64 4b4c_A Chromodomain-helicase-D 93.2 0.06 2.1E-06 49.4 4.0 31 212-242 133-164 (211)
65 2xb0_X Chromo domain-containin 93.2 0.06 2E-06 52.2 4.0 31 211-241 166-197 (270)
66 1irz_A ARR10-B; helix-turn-hel 91.7 0.3 1E-05 37.4 5.5 44 213-256 7-55 (64)
67 4b4c_A Chromodomain-helicase-D 91.4 0.19 6.6E-06 46.0 4.9 42 213-254 7-53 (211)
68 1tot_A CREB-binding protein; z 90.6 0.081 2.8E-06 38.8 1.3 42 160-207 6-48 (52)
69 1ofc_X ISWI protein; nuclear p 89.2 0.3 1E-05 48.1 4.4 47 212-258 211-273 (304)
70 2y9y_A Imitation switch protei 87.3 0.58 2E-05 47.2 5.2 40 214-253 124-165 (374)
71 2y9y_A Imitation switch protei 73.8 3.5 0.00012 41.6 5.2 46 213-258 228-289 (374)
72 2fu4_A Ferric uptake regulatio 70.7 3.9 0.00013 31.2 3.8 47 82-128 19-70 (83)
73 2heo_A Z-DNA binding protein 1 69.8 5.6 0.00019 29.7 4.4 52 75-127 5-56 (67)
74 1mzb_A Ferric uptake regulatio 62.9 9.1 0.00031 32.3 4.9 46 82-127 20-70 (136)
75 2o03_A Probable zinc uptake re 59.8 13 0.00046 31.0 5.4 51 77-128 8-63 (131)
76 2xb0_X Chromo domain-containin 57.7 13 0.00044 35.9 5.4 42 213-254 3-49 (270)
77 2w57_A Ferric uptake regulatio 54.7 11 0.00037 32.5 4.0 47 82-128 19-70 (150)
78 1ign_A Protein (RAP1); RAP1,ye 54.6 17 0.00058 34.6 5.6 24 234-257 173-196 (246)
79 2xig_A Ferric uptake regulatio 54.6 16 0.00056 31.3 5.2 48 79-127 26-78 (150)
80 2htj_A P fimbrial regulatory p 54.4 19 0.00066 27.2 5.0 45 82-128 2-46 (81)
81 2d8v_A Zinc finger FYVE domain 53.1 6.6 0.00022 30.2 2.0 45 160-206 8-52 (67)
82 3e7l_A Transcriptional regulat 50.8 14 0.00048 27.0 3.6 27 218-244 18-44 (63)
83 2fe3_A Peroxide operon regulat 50.4 21 0.00072 30.4 5.2 46 82-128 24-74 (145)
84 3mwm_A ZUR, putative metal upt 47.7 23 0.00079 30.0 5.0 50 77-127 11-65 (139)
85 1oyi_A Double-stranded RNA-bin 46.2 35 0.0012 27.0 5.4 54 80-137 17-70 (82)
86 4ham_A LMO2241 protein; struct 45.7 37 0.0013 28.3 5.9 54 76-130 18-72 (134)
87 3tqn_A Transcriptional regulat 44.3 23 0.0008 28.7 4.3 55 75-130 12-67 (113)
88 3by6_A Predicted transcription 43.6 29 0.00099 28.9 4.9 54 75-129 14-68 (126)
89 3eyy_A Putative iron uptake re 43.6 22 0.00077 30.3 4.3 45 82-128 21-70 (145)
90 3r0a_A Putative transcriptiona 41.9 45 0.0015 27.3 5.8 47 83-129 29-75 (123)
91 2ek5_A Predicted transcription 39.6 25 0.00087 29.5 3.9 54 75-129 7-61 (129)
92 4ets_A Ferric uptake regulatio 38.3 34 0.0012 29.8 4.7 59 64-128 22-87 (162)
93 2d1h_A ST1889, 109AA long hypo 37.0 56 0.0019 24.9 5.3 37 95-131 35-71 (109)
94 1qgp_A Protein (double strande 36.8 53 0.0018 25.1 5.0 59 78-137 12-71 (77)
95 2k4b_A Transcriptional regulat 35.6 51 0.0017 26.5 5.0 39 87-128 43-85 (99)
96 2pjp_A Selenocysteine-specific 35.2 60 0.002 26.6 5.5 51 74-126 60-110 (121)
97 2vn2_A DNAD, chromosome replic 34.2 46 0.0016 27.7 4.6 40 92-131 47-86 (128)
98 1bja_A Transcription regulator 33.9 47 0.0016 27.0 4.5 36 90-127 26-62 (95)
99 1qbj_A Protein (double-strande 33.8 61 0.0021 25.2 5.0 55 82-137 12-67 (81)
100 2x4h_A Hypothetical protein SS 33.5 75 0.0026 25.8 5.9 54 73-129 11-64 (139)
101 3neu_A LIN1836 protein; struct 33.1 47 0.0016 27.4 4.5 54 75-129 16-70 (125)
102 2jt1_A PEFI protein; solution 33.0 82 0.0028 24.3 5.6 55 75-129 3-57 (77)
103 2kj8_A Putative prophage CPS-5 33.0 47 0.0016 26.0 4.4 57 74-130 23-95 (118)
104 3c7j_A Transcriptional regulat 32.4 32 0.0011 31.5 3.7 57 72-129 26-82 (237)
105 1v4r_A Transcriptional repress 32.2 19 0.00067 28.4 1.9 55 74-129 13-68 (102)
106 2oqg_A Possible transcriptiona 32.1 78 0.0027 24.7 5.6 46 81-129 22-67 (114)
107 2k02_A Ferrous iron transport 31.9 72 0.0025 25.4 5.2 42 84-127 6-47 (87)
108 2b0l_A GTP-sensing transcripti 30.6 35 0.0012 27.5 3.2 52 76-129 22-76 (102)
109 3bro_A Transcriptional regulat 30.1 69 0.0023 25.6 5.0 41 91-131 45-85 (141)
110 1xn7_A Hypothetical protein YH 30.1 76 0.0026 24.5 4.9 41 84-126 6-46 (78)
111 3cuo_A Uncharacterized HTH-typ 29.9 82 0.0028 23.7 5.2 49 81-131 25-73 (99)
112 3eco_A MEPR; mutlidrug efflux 29.7 72 0.0025 25.6 5.1 45 87-131 38-82 (139)
113 1umq_A Photosynthetic apparatu 29.7 45 0.0015 26.1 3.6 29 216-244 38-66 (81)
114 2qvo_A Uncharacterized protein 26.8 74 0.0025 24.5 4.4 34 93-126 27-60 (95)
115 2dk5_A DNA-directed RNA polyme 26.1 77 0.0026 25.1 4.4 35 93-127 33-67 (91)
116 1y0u_A Arsenical resistance op 26.0 1E+02 0.0036 23.6 5.2 44 81-128 32-75 (96)
117 1ntc_A Protein (nitrogen regul 25.9 45 0.0015 26.1 3.0 27 218-244 50-76 (91)
118 3e3v_A Regulatory protein RECX 25.5 1.2E+02 0.0041 26.7 6.0 55 74-131 13-70 (177)
119 1sfx_A Conserved hypothetical 25.3 97 0.0033 23.4 4.9 35 96-130 34-68 (109)
120 4b8x_A SCO5413, possible MARR- 25.2 71 0.0024 26.6 4.3 41 91-131 46-86 (147)
121 2y75_A HTH-type transcriptiona 25.0 91 0.0031 25.4 4.9 37 93-129 23-59 (129)
122 2hzd_A Transcriptional enhance 24.9 72 0.0025 25.3 3.9 21 212-232 5-25 (82)
123 3dpt_A ROCO, RAB family protei 24.8 46 0.0016 32.6 3.5 58 72-131 12-73 (332)
124 1cf7_A Protein (transcription 24.7 1.1E+02 0.0037 23.7 4.9 46 81-127 16-62 (76)
125 2kj5_A Phage integrase; GFT PS 23.8 43 0.0015 25.8 2.5 23 109-131 75-97 (116)
126 1v5n_A PDI-like hypothetical p 23.7 36 0.0012 27.1 2.0 31 160-190 47-77 (89)
127 1ub9_A Hypothetical protein PH 22.7 1.2E+02 0.0042 22.7 5.0 46 82-129 18-63 (100)
128 2li6_A SWI/SNF chromatin-remod 21.6 69 0.0023 26.4 3.4 42 222-264 52-103 (116)
129 2h09_A Transcriptional regulat 21.4 1.4E+02 0.0047 24.7 5.4 51 77-129 37-87 (155)
130 1weo_A Cellulose synthase, cat 21.4 56 0.0019 26.5 2.7 35 156-190 12-51 (93)
131 1sd4_A Penicillinase repressor 21.4 95 0.0033 24.6 4.2 43 85-130 16-62 (126)
132 1sfu_A 34L protein; protein/Z- 20.5 1.9E+02 0.0064 22.5 5.4 58 74-134 10-67 (75)
133 2pn6_A ST1022, 150AA long hypo 20.4 1.3E+02 0.0044 24.9 5.0 49 81-131 4-53 (150)
134 2fbi_A Probable transcriptiona 20.4 1.3E+02 0.0043 23.9 4.8 36 96-131 50-85 (142)
135 3sxy_A Transcriptional regulat 20.4 81 0.0028 28.0 3.9 58 72-130 12-69 (218)
136 2frh_A SARA, staphylococcal ac 20.1 1.8E+02 0.0061 23.3 5.7 40 92-131 49-88 (127)
No 1
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=100.00 E-value=1.4e-41 Score=287.05 Aligned_cols=94 Identities=44% Similarity=0.814 Sum_probs=84.7
Q ss_pred CeeecCCCCCCCCCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHH
Q 014788 38 DVVNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVF 117 (418)
Q Consensus 38 ~~iiiPs~s~WF~~~~ih~iE~~~lpeff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh 117 (418)
|+=.-|+|+.||++++||++|+++|||||+|++++|||++|++|||+||++||.||.+|||+|+||++|+|||++|+|||
T Consensus 9 ~~~~~p~~s~wF~~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~gDv~~i~RVh 88 (104)
T 2fq3_A 9 HHGMASSYSKWFNLEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLH 88 (104)
T ss_dssp --------CTTCCTTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHH
T ss_pred cCCCCCCcccccCcccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccccHHHHHHHH
Confidence 34467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccccCCCC
Q 014788 118 DFLETWGLINYFAS 131 (418)
Q Consensus 118 ~FLe~wGlINy~~~ 131 (418)
+|||+|||||||++
T Consensus 89 ~FLe~wGLIN~~v~ 102 (104)
T 2fq3_A 89 KFLTKWGLINYQVD 102 (104)
T ss_dssp HHHHHTTSSSSCC-
T ss_pred HHHHHcCeeccCCC
Confidence 99999999999998
No 2
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=5.7e-41 Score=286.88 Aligned_cols=93 Identities=30% Similarity=0.468 Sum_probs=90.8
Q ss_pred CeeecCCCCCCCCCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhc--cchhHHHHH
Q 014788 38 DVVNVPSYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTL--VGDVGSIRR 115 (418)
Q Consensus 38 ~~iiiPs~s~WF~~~~ih~iE~~~lpeff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l--~gDv~~i~R 115 (418)
.+++||+|+.||++++||++|+++|||||+|+ ++|||++|++|||+||++||.||.+|||+|+||++| .|||++|+|
T Consensus 11 ~~~~iP~~~~wf~~~~ih~iEk~~lPefF~g~-~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~gDv~~i~R 89 (111)
T 2dce_A 11 EELKPPEQEIEIDRNIIQEEEKQAIPEFFEGR-QAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVNCIGR 89 (111)
T ss_dssp CSCCCCSSCCCCCSSCCCHHHHTTSGGGGSCC-SSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSSCHHHHHH
T ss_pred cCCcCCCcccccCcccCCHHHHHhChHHhcCC-cccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhcccccCHHHHHH
Confidence 57999999999999999999999999999998 899999999999999999999999999999999999 599999999
Q ss_pred HHHhhhhcccccCCCC
Q 014788 116 VFDFLETWGLINYFAS 131 (418)
Q Consensus 116 vh~FLe~wGlINy~~~ 131 (418)
||+|||+|||||||++
T Consensus 90 Vh~FLe~wGLIN~~~~ 105 (111)
T 2dce_A 90 IHTYLELIGAINFGCE 105 (111)
T ss_dssp HHHHHHHHSSSSCSCT
T ss_pred HHHHHHHcCeeecCCC
Confidence 9999999999999998
No 3
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=128.07 Aligned_cols=54 Identities=44% Similarity=0.970 Sum_probs=52.1
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcCCCCCccc
Q 014788 211 EARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQEFI 264 (418)
Q Consensus 211 ~~~~~WT~~E~l~LLe~ie~yg~nW~~IA~~VgtkT~~eC~~hfl~LPIeD~~l 264 (418)
.....||.+|+.+||++|++||++|.+||++||+||..||+.||+++||+|+|+
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~ 69 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYL 69 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSC
T ss_pred ccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhccccccc
Confidence 346899999999999999999999999999999999999999999999999999
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.44 E-value=1.3e-13 Score=104.51 Aligned_cols=49 Identities=24% Similarity=0.630 Sum_probs=46.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhC-CCCHHHHHHHHhcCCCC
Q 014788 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVS-GKSEKDCITHFIKLPFG 260 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg-~nW~~IA~~Vg-tkT~~eC~~hfl~LPIe 260 (418)
....||.+|+.+||++|++|| ++|.+||++|| +||..||+.||.+++|.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~~ 58 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIE 58 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHccC
Confidence 357899999999999999999 99999999999 99999999999998874
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.35 E-value=1e-12 Score=100.05 Aligned_cols=50 Identities=34% Similarity=0.767 Sum_probs=46.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhcCCCCC
Q 014788 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKLPFGQ 261 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg-~nW~~IA~~VgtkT~~eC~~hfl~LPIeD 261 (418)
....||.+|+.+|+++|++|| ++|.+||++|++||..||+.||.++.+..
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 467899999999999999999 89999999999999999999999887654
No 6
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.27 E-value=3.2e-12 Score=101.48 Aligned_cols=64 Identities=31% Similarity=0.477 Sum_probs=54.5
Q ss_pred CCCCccccccCcccCCCCCHHHHHHHHHHHHHhC----CCHHHHHHHhCCCCHHHHHHHHhcCCCCCcc
Q 014788 199 SSSDFRRVEISEEARSDWTEKETLQLLEAIMHFG----DDWRKVAQHVSGKSEKDCITHFIKLPFGQEF 263 (418)
Q Consensus 199 ~s~dF~ki~~~~~~~~~WT~~E~l~LLe~ie~yg----~nW~~IA~~VgtkT~~eC~~hfl~LPIeD~~ 263 (418)
+..++.+.+.+......||.+|+.+|+++|.+|| ++|.+||++|++||..||+.||..| ++|..
T Consensus 4 ~~~~~~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L-~~d~~ 71 (73)
T 2cqr_A 4 GSSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL-VSGPS 71 (73)
T ss_dssp CSSSCCCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH-HSSCC
T ss_pred cccccccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHccc
Confidence 3456666666666778999999999999999999 6899999999999999999999986 55543
No 7
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.13 E-value=5.9e-11 Score=87.51 Aligned_cols=45 Identities=24% Similarity=0.699 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 014788 213 RSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKL 257 (418)
Q Consensus 213 ~~~WT~~E~l~LLe~ie~yg-~nW~~IA~~VgtkT~~eC~~hfl~L 257 (418)
...||.+|+.+|+++|++|| ++|..||++|++||..||..||..+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHH
Confidence 57899999999999999999 5899999999999999999999863
No 8
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.12 E-value=5.9e-11 Score=87.43 Aligned_cols=45 Identities=22% Similarity=0.604 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-CHHHHHHHhCCCCHHHHHHHHhcC
Q 014788 213 RSDWTEKETLQLLEAIMHFGD-DWRKVAQHVSGKSEKDCITHFIKL 257 (418)
Q Consensus 213 ~~~WT~~E~l~LLe~ie~yg~-nW~~IA~~VgtkT~~eC~~hfl~L 257 (418)
...||.+|+.+|+++|++||. +|..||++|++||..||..||..+
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468999999999999999995 999999999999999999999763
No 9
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.09 E-value=1.2e-10 Score=86.38 Aligned_cols=45 Identities=18% Similarity=0.437 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhC--CCCHHHHHHHHhcC
Q 014788 213 RSDWTEKETLQLLEAIMHFG-DDWRKVAQHVS--GKSEKDCITHFIKL 257 (418)
Q Consensus 213 ~~~WT~~E~l~LLe~ie~yg-~nW~~IA~~Vg--tkT~~eC~~hfl~L 257 (418)
...||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..+
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 36899999999999999999 89999999999 99999999999864
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.09 E-value=1.3e-10 Score=88.06 Aligned_cols=46 Identities=26% Similarity=0.727 Sum_probs=43.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 014788 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKL 257 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg-~nW~~IA~~VgtkT~~eC~~hfl~L 257 (418)
....||.+|+.+|+++|.+|| ++|..||++|++||..||..||..+
T Consensus 7 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 7 GKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRV 53 (60)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHH
Confidence 457899999999999999999 7999999999999999999999863
No 11
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.08 E-value=1.2e-10 Score=91.71 Aligned_cols=46 Identities=15% Similarity=0.354 Sum_probs=43.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 014788 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg~nW~~IA~~VgtkT~~eC~~hfl~L 257 (418)
....||.+|+.+|++++++||.+|..||++|++||..||..||..+
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~ 53 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQY 53 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4579999999999999999999999999999999999999999864
No 12
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=7.4e-11 Score=93.37 Aligned_cols=45 Identities=20% Similarity=0.493 Sum_probs=42.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhC------CCHHHHHHHhCCCCHHHHHHHHhc
Q 014788 212 ARSDWTEKETLQLLEAIMHFG------DDWRKVAQHVSGKSEKDCITHFIK 256 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg------~nW~~IA~~VgtkT~~eC~~hfl~ 256 (418)
....||.+|+.+|+++|++|| ++|..||++|++||..||+.||.+
T Consensus 7 ~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~ 57 (75)
T 2yum_A 7 GNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQK 57 (75)
T ss_dssp CSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHH
Confidence 457899999999999999999 789999999999999999999975
No 13
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.03 E-value=2.3e-10 Score=90.71 Aligned_cols=46 Identities=28% Similarity=0.578 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CCHHHHHHHhCCCCHHHHHHHHhcCC
Q 014788 213 RSDWTEKETLQLLEAIMHFG----DDWRKVAQHVSGKSEKDCITHFIKLP 258 (418)
Q Consensus 213 ~~~WT~~E~l~LLe~ie~yg----~nW~~IA~~VgtkT~~eC~~hfl~LP 258 (418)
...||.+|+.+|.+||..|+ ++|++||.+||+||.+||+.||..|+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP 57 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 46899999999999999998 57999999999999999999999984
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=3.2e-10 Score=88.57 Aligned_cols=46 Identities=26% Similarity=0.593 Sum_probs=43.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 014788 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKL 257 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg-~nW~~IA~~VgtkT~~eC~~hfl~L 257 (418)
....||.+|+.+|+++|++|| ++|..||++|++||..||..||.++
T Consensus 8 k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 8 KGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEW 54 (70)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHH
Confidence 357899999999999999999 8999999999999999999999883
No 15
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.00 E-value=4.3e-10 Score=86.88 Aligned_cols=45 Identities=11% Similarity=0.421 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhC--CCCHHHHHHHHhcC
Q 014788 213 RSDWTEKETLQLLEAIMHFG-DDWRKVAQHVS--GKSEKDCITHFIKL 257 (418)
Q Consensus 213 ~~~WT~~E~l~LLe~ie~yg-~nW~~IA~~Vg--tkT~~eC~~hfl~L 257 (418)
...||.+|+.+|+++|++|| ++|..||++++ +||..||..+|..|
T Consensus 11 k~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 57899999999999999999 79999999976 89999999999763
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.97 E-value=6.6e-10 Score=86.63 Aligned_cols=46 Identities=17% Similarity=0.424 Sum_probs=43.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhC--CCCHHHHHHHHhcC
Q 014788 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVS--GKSEKDCITHFIKL 257 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg-~nW~~IA~~Vg--tkT~~eC~~hfl~L 257 (418)
....||.+|+.+|+++|++|| ++|..||++++ +||..||..||..+
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 57 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 57 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 357899999999999999999 89999999999 99999999999873
No 17
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=2.5e-09 Score=81.66 Aligned_cols=45 Identities=18% Similarity=0.349 Sum_probs=42.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhc
Q 014788 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIK 256 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg~nW~~IA~~VgtkT~~eC~~hfl~ 256 (418)
....||++|..++++++.+||.+|..||.+|++||..||+.||..
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999864
No 18
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=2e-09 Score=83.09 Aligned_cols=45 Identities=22% Similarity=0.620 Sum_probs=41.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 014788 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg~nW~~IA~~VgtkT~~eC~~hfl~L 257 (418)
....||.+|+.+|+++++.||.+|..||+.+| ||..||+.||..+
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~g-Rt~~qcr~Rw~~~ 52 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPTQWRTIAPIIG-RTAAQCLEHYEFL 52 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHS-SCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHhcccC-cCHHHHHHHHHHH
Confidence 45789999999999999999999999999555 9999999999874
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.84 E-value=2.2e-09 Score=88.85 Aligned_cols=46 Identities=26% Similarity=0.570 Sum_probs=42.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhC----CCHHHHHHHhCCCCHHHHHHHHhcC
Q 014788 212 ARSDWTEKETLQLLEAIMHFG----DDWRKVAQHVSGKSEKDCITHFIKL 257 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg----~nW~~IA~~VgtkT~~eC~~hfl~L 257 (418)
....||.+|+.+|+++|.+|| +.|.+||++|++||.+||+.||..|
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL 56 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 357899999999999999997 5699999999999999999999885
No 20
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.34 E-value=3.3e-10 Score=92.89 Aligned_cols=46 Identities=22% Similarity=0.521 Sum_probs=43.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 014788 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg~nW~~IA~~VgtkT~~eC~~hfl~L 257 (418)
..+.||.+|+.+|++++++||.+|..||++|++||..||..||..+
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~ 60 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNY 60 (89)
Confidence 4679999999999999999999999999999999999999999864
No 21
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.82 E-value=5.4e-09 Score=82.90 Aligned_cols=46 Identities=20% Similarity=0.382 Sum_probs=43.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 014788 211 EARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (418)
Q Consensus 211 ~~~~~WT~~E~l~LLe~ie~yg~nW~~IA~~VgtkT~~eC~~hfl~L 257 (418)
.....||.+|+.+|++++.+||.+|..||+++ +||..||+.+|..|
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L 66 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM 66 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence 34689999999999999999999999999999 99999999999874
No 22
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.78 E-value=7.2e-09 Score=97.89 Aligned_cols=46 Identities=24% Similarity=0.536 Sum_probs=43.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhc
Q 014788 211 EARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIK 256 (418)
Q Consensus 211 ~~~~~WT~~E~l~LLe~ie~yg~nW~~IA~~VgtkT~~eC~~hfl~ 256 (418)
.....||++|..++++|+.+||.||..||++||+||..||+.||..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~ 176 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 176 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 3467999999999999999999999999999999999999999975
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.76 E-value=7.1e-09 Score=87.19 Aligned_cols=43 Identities=26% Similarity=0.647 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhc
Q 014788 214 SDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIK 256 (418)
Q Consensus 214 ~~WT~~E~l~LLe~ie~yg-~nW~~IA~~VgtkT~~eC~~hfl~ 256 (418)
..||.+|+.+|+++|++|| ++|..||++|++||..||..||.+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNN 45 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHH
Confidence 5799999999999999999 599999999999999999999987
No 24
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.74 E-value=1.1e-08 Score=85.47 Aligned_cols=46 Identities=22% Similarity=0.662 Sum_probs=42.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 014788 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKL 257 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg-~nW~~IA~~VgtkT~~eC~~hfl~L 257 (418)
..+.||.+|+.+|+++|++|| ++|..||++|++||..||..||..+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 49 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhc
Confidence 357899999999999999999 5899999999999999999999883
No 25
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.72 E-value=1.2e-08 Score=85.89 Aligned_cols=46 Identities=15% Similarity=0.532 Sum_probs=43.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 014788 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg~nW~~IA~~VgtkT~~eC~~hfl~L 257 (418)
..++||.+|+.+|++++.+||.+|..||++|++||..+|..||..|
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l 97 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMI 97 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999764
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.70 E-value=1.3e-08 Score=84.95 Aligned_cols=46 Identities=22% Similarity=0.571 Sum_probs=43.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 014788 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg~nW~~IA~~VgtkT~~eC~~hfl~L 257 (418)
....||.+|+.+|++++.+||.+|..||++|++||..||..||..+
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999753
No 27
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.69 E-value=1.6e-08 Score=87.46 Aligned_cols=45 Identities=20% Similarity=0.521 Sum_probs=43.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhc
Q 014788 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIK 256 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg~nW~~IA~~VgtkT~~eC~~hfl~ 256 (418)
....||.+|+.+|+++|++||.+|..||+++++||..||..||.+
T Consensus 10 kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~ 54 (126)
T 3osg_A 10 KKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKN 54 (126)
T ss_dssp SSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhh
Confidence 467899999999999999999999999999999999999999997
No 28
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.68 E-value=1.5e-08 Score=87.74 Aligned_cols=45 Identities=20% Similarity=0.589 Sum_probs=42.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhc
Q 014788 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIK 256 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg~nW~~IA~~VgtkT~~eC~~hfl~ 256 (418)
....||.+|+.+|++++.+||.+|..||++|++||..+|..||..
T Consensus 61 ~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~ 105 (126)
T 3osg_A 61 SHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105 (126)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999976
No 29
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.67 E-value=2.1e-08 Score=81.32 Aligned_cols=44 Identities=25% Similarity=0.441 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCHHHHHHH----hCCCCHHHHHHHHhcC
Q 014788 214 SDWTEKETLQLLEAIMHFG-DDWRKVAQH----VSGKSEKDCITHFIKL 257 (418)
Q Consensus 214 ~~WT~~E~l~LLe~ie~yg-~nW~~IA~~----VgtkT~~eC~~hfl~L 257 (418)
..||.+|+..|+++|++|| |+|.+|++. +.+||..+|..||..+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnl 49 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTL 49 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHH
Confidence 3799999999999999999 799999996 7899999999999875
No 30
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=98.67 E-value=4.5e-08 Score=107.57 Aligned_cols=91 Identities=22% Similarity=0.261 Sum_probs=76.2
Q ss_pred CCCCeeecCCCCCCCCC------------CCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHH
Q 014788 35 SEPDVVNVPSYSRWFSF------------DSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDV 102 (418)
Q Consensus 35 ~q~~~iiiPs~s~WF~~------------~~ih~iE~~~lpeff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~ 102 (418)
.+++...+..|-.+|-. |.|+..|+..||||..+ +..|+.|||.|+.+|+.||...||...|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~p~~~~~~e~~~fp~~~~~------~~~yl~irn~il~~w~~np~~~l~~~~~ 285 (776)
T 4gut_A 212 LSVHVPGMNRYFQPFYQPNECGKALCVRPDVMELDELYEFPEYSRD------PTMYLALRNLILALWYTNCKEALTPQKC 285 (776)
T ss_dssp ------CCCTTCCCBCCTTCCCCSSCBCTTSCCHHHHHHCGGGSSC------CHHHHHHHHHHHHHHHHCTTSCCCHHHH
T ss_pred ccccccccccccccccCCCccccchhcCCCcCChHHHHhChHHHhc------CceeeeehHHHHHHHHHCCceeeeHHHh
Confidence 35556677788888855 99999999999999975 6799999999999999999999999999
Q ss_pred HHhcc-------chhHHHHHHHHhhhhcccccCCCC
Q 014788 103 RRTLV-------GDVGSIRRVFDFLETWGLINYFAS 131 (418)
Q Consensus 103 r~~l~-------gDv~~i~Rvh~FLe~wGlINy~~~ 131 (418)
++.+. .++..+.+|+.||.++|+||++..
T Consensus 286 ~~~~~~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 321 (776)
T 4gut_A 286 IPHIIVRGLVRIRCVQEVERILYFMTRKGLINTGVL 321 (776)
T ss_dssp GGGCCCSSTHHHHHHHHHHHHHHHHHHHTSSSCTTC
T ss_pred hhhcccccccccccHHHHHHHHHHHHHhhhhhcccc
Confidence 88764 256778999999999999999886
No 31
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.66 E-value=3.2e-08 Score=85.60 Aligned_cols=45 Identities=24% Similarity=0.731 Sum_probs=42.6
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhc
Q 014788 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIK 256 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg-~nW~~IA~~VgtkT~~eC~~hfl~ 256 (418)
....||.+|+.+|+++|++|| ++|..||++|++||..||..||..
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHN 71 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHH
Confidence 457899999999999999999 689999999999999999999987
No 32
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.64 E-value=3.4e-08 Score=85.38 Aligned_cols=46 Identities=22% Similarity=0.579 Sum_probs=43.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 014788 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg~nW~~IA~~VgtkT~~eC~~hfl~L 257 (418)
..+.||.+|+.+|++++.+||.+|..||++|++||..+|..||..+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999864
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.63 E-value=1.5e-08 Score=88.15 Aligned_cols=44 Identities=20% Similarity=0.503 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhc
Q 014788 213 RSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIK 256 (418)
Q Consensus 213 ~~~WT~~E~l~LLe~ie~yg-~nW~~IA~~VgtkT~~eC~~hfl~ 256 (418)
++.||.+|+.+|+++|++|| ++|..||++|++||..||..||.+
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~ 46 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFN 46 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhh
Confidence 46899999999999999999 899999999999999999999987
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.59 E-value=3.8e-08 Score=85.55 Aligned_cols=45 Identities=16% Similarity=0.513 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 014788 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (418)
Q Consensus 213 ~~~WT~~E~l~LLe~ie~yg~nW~~IA~~VgtkT~~eC~~hfl~L 257 (418)
.+.||.+|+.+|++++.+||.+|..||++|++||..+|..||..+
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~ 98 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSS 98 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999874
No 35
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=98.58 E-value=3.9e-08 Score=105.71 Aligned_cols=85 Identities=24% Similarity=0.502 Sum_probs=74.5
Q ss_pred CCCCCCCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhc----cchhHHHHHHHHhh
Q 014788 45 YSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTL----VGDVGSIRRVFDFL 120 (418)
Q Consensus 45 ~s~WF~~~~ih~iE~~~lpeff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l----~gDv~~i~Rvh~FL 120 (418)
+++.|+.+.+|+.|+..|||+..+ +..+...|+.|||.|+.+|+.||..+||+.+|...+ ..|-..|.+|++|+
T Consensus 8 ~~~~l~~~~l~~~E~~~~~~~~~~--~~~~~~~yl~irn~~~~~w~~~~~~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~ 85 (662)
T 2z3y_A 8 FQSRLPHDRMTSQEAACFPDIISG--PQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSYL 85 (662)
T ss_dssp HHTTCCTTSCCHHHHHHCHHHHTS--CHHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHSCTTGGGCHHHHHHHHHHH
T ss_pred HHcCCCCCCCCHHHHHHhHHHHcC--chHHHHHHHHHHHHHHHHHHHCCCcccCHHHHHHhcCCCccCChHHHHHHHHHH
Confidence 568899999999999999999975 222346899999999999999999999999996544 46788999999999
Q ss_pred hhcccccCCCC
Q 014788 121 ETWGLINYFAS 131 (418)
Q Consensus 121 e~wGlINy~~~ 131 (418)
.++|+||+++.
T Consensus 86 ~~~~~~~~~~~ 96 (662)
T 2z3y_A 86 ERHGLINFGIY 96 (662)
T ss_dssp HHTTSSSCSSC
T ss_pred HHHHHHhcCCc
Confidence 99999998877
No 36
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=1.8e-07 Score=71.90 Aligned_cols=44 Identities=18% Similarity=0.507 Sum_probs=41.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHH-hCCCCHHHHHHHHh
Q 014788 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQH-VSGKSEKDCITHFI 255 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg~nW~~IA~~-VgtkT~~eC~~hfl 255 (418)
....||++|..++++|+.+||.||..|+++ |++||..||+.+|.
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 357899999999999999999999999996 99999999999985
No 37
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.47 E-value=1.4e-07 Score=98.02 Aligned_cols=45 Identities=24% Similarity=0.539 Sum_probs=43.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhc
Q 014788 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIK 256 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg~nW~~IA~~VgtkT~~eC~~hfl~ 256 (418)
....||++|..++|+||.+||.||..||++|||||..||+.||..
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~ 423 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 423 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999975
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.44 E-value=1.9e-07 Score=83.48 Aligned_cols=46 Identities=22% Similarity=0.571 Sum_probs=43.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcC
Q 014788 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKL 257 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg~nW~~IA~~VgtkT~~eC~~hfl~L 257 (418)
...+||.+|+.+|++++.+||.+|..||++|++||..+|..||..+
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred cccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999875
No 39
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.43 E-value=2e-07 Score=73.63 Aligned_cols=48 Identities=27% Similarity=0.513 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CCHHHHHHHhCCCCHHHHHHHHhcCCCCCc
Q 014788 213 RSDWTEKETLQLLEAIMHFG----DDWRKVAQHVSGKSEKDCITHFIKLPFGQE 262 (418)
Q Consensus 213 ~~~WT~~E~l~LLe~ie~yg----~nW~~IA~~VgtkT~~eC~~hfl~LPIeD~ 262 (418)
...||.+|+.+|..++.+|+ +.|++||+++| ||.+||+.||..| .+|.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg-Rt~~eV~~~y~~L-~~d~ 59 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG-RSVTDVTTKAKQL-KDSV 59 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT-SCHHHHHHHHHHH-HHSC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC-CCHHHHHHHHHHH-HHhc
Confidence 56899999999999999998 56999999995 9999999999998 6664
No 40
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.41 E-value=2.7e-07 Score=79.91 Aligned_cols=46 Identities=28% Similarity=0.431 Sum_probs=42.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHh----CCCCHHHHHHHHhcC
Q 014788 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHV----SGKSEKDCITHFIKL 257 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg-~nW~~IA~~V----gtkT~~eC~~hfl~L 257 (418)
....||.+|+..|+++|++|| |+|.+|+++. .+||..+|..+|..|
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnl 80 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTL 80 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 358999999999999999999 7999999985 689999999999885
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.39 E-value=2.3e-07 Score=78.37 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=42.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHh----CCCCHHHHHHHHhcC
Q 014788 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHV----SGKSEKDCITHFIKL 257 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg-~nW~~IA~~V----gtkT~~eC~~hfl~L 257 (418)
....||.+|+..|++||++|| |+|.+|++.. .+||..+|..+|..|
T Consensus 12 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnl 62 (105)
T 2aje_A 12 IRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTL 62 (105)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 357999999999999999999 7999999976 689999999999874
No 42
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.39 E-value=3.7e-07 Score=81.61 Aligned_cols=46 Identities=22% Similarity=0.662 Sum_probs=42.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHHhcC
Q 014788 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHFIKL 257 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg-~nW~~IA~~VgtkT~~eC~~hfl~L 257 (418)
....||.+|+.+|++++.+|| ++|..||+++++||..||..||..+
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 103 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 357899999999999999999 5899999999999999999999873
No 43
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.35 E-value=5.7e-07 Score=70.53 Aligned_cols=52 Identities=19% Similarity=0.379 Sum_probs=44.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHH-hCCCCHHHHHHHHhcCCCCCcc
Q 014788 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQH-VSGKSEKDCITHFIKLPFGQEF 263 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg~nW~~IA~~-VgtkT~~eC~~hfl~LPIeD~~ 263 (418)
....||++|..++.+|+.+||.||..|+++ |++||..||+.+|..---.+.|
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~wKkt~~y 59 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDRY 59 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHHHTCCSS
T ss_pred CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHhhcCCchH
Confidence 346899999999999999999999999995 9999999999999743333333
No 44
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.33 E-value=3.7e-07 Score=78.94 Aligned_cols=46 Identities=26% Similarity=0.450 Sum_probs=42.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHh----CCCCHHHHHHHHhcC
Q 014788 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHV----SGKSEKDCITHFIKL 257 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg-~nW~~IA~~V----gtkT~~eC~~hfl~L 257 (418)
....||.+|+..|+++|++|| |+|.+|+++. .+||..+|..+|..|
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnl 66 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTL 66 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHH
Confidence 468999999999999999999 7999999996 689999999999874
No 45
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.24 E-value=1.3e-06 Score=72.34 Aligned_cols=45 Identities=18% Similarity=0.402 Sum_probs=42.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhc
Q 014788 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIK 256 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg~nW~~IA~~VgtkT~~eC~~hfl~ 256 (418)
....||++|-.++.+++..||.+|..|+++|++||..||+.+|..
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 357899999999999999999999999999999999999999853
No 46
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.23 E-value=1.4e-07 Score=74.50 Aligned_cols=43 Identities=28% Similarity=0.533 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CCHHHHHHHhCCCCHHHHHHHHh
Q 014788 213 RSDWTEKETLQLLEAIMHFG----DDWRKVAQHVSGKSEKDCITHFI 255 (418)
Q Consensus 213 ~~~WT~~E~l~LLe~ie~yg----~nW~~IA~~VgtkT~~eC~~hfl 255 (418)
...||.+|..+|-.||.+|+ +.|++||..||+||.+||+.||-
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 56899999999999999999 47999999999999999999983
No 47
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.12 E-value=2.4e-06 Score=65.50 Aligned_cols=46 Identities=22% Similarity=0.497 Sum_probs=41.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHH---HhCCCCHHHHHHHHhcC
Q 014788 212 ARSDWTEKETLQLLEAIMHFGDDWRKVAQ---HVSGKSEKDCITHFIKL 257 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg~nW~~IA~---~VgtkT~~eC~~hfl~L 257 (418)
....||.+|+..|++||++||.+|.+|+. ++..||.-....+|-.|
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L 55 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL 55 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHH
Confidence 45789999999999999999999999994 66789999999998764
No 48
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.83 E-value=9.3e-06 Score=77.40 Aligned_cols=46 Identities=11% Similarity=0.245 Sum_probs=41.8
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCC------HHHHHHHhCCCCHHHHHHHHhcC
Q 014788 212 ARSDWTEKETLQLLEAIMHFGDD------WRKVAQHVSGKSEKDCITHFIKL 257 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg~n------W~~IA~~VgtkT~~eC~~hfl~L 257 (418)
....||.+|+.+||+.+++||.. |..||+++.+||..+|+.||..+
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~ 58 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVY 58 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35789999999999999999953 99999999999999999999873
No 49
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=97.76 E-value=2.6e-05 Score=86.64 Aligned_cols=86 Identities=22% Similarity=0.485 Sum_probs=74.0
Q ss_pred CCCCCCCCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHh----ccchhHHHHHHHHh
Q 014788 44 SYSRWFSFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRT----LVGDVGSIRRVFDF 119 (418)
Q Consensus 44 s~s~WF~~~~ih~iE~~~lpeff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~----l~gDv~~i~Rvh~F 119 (418)
.|.++|+.+.+|..|+.+||++-.. ......+|+.+||.|+..|+.||...++...|... +..|-..|.+|++|
T Consensus 178 a~~~r~p~~~~~~~e~~~f~~~~~~--~~~~~~~~~~~rn~i~~~w~~~P~~a~~~~~~~~~~~r~~~~~p~~i~~~~~~ 255 (852)
T 2xag_A 178 AFQSRLPHDRMTSQEAACFPDIISG--PQQTQKVFLFIRNRTLQLWLDNPKIQLTFEATLQQLEAPYNSDTVLVHRVHSY 255 (852)
T ss_dssp HHTTTCCTTSCCHHHHHHCHHHHTS--CHHHHHHHHHHHHHHHHHHHTCTTBCCCHHHHHHHCCTTTTSCHHHHHHHHHH
T ss_pred HHHhcCCCcccChHHHHHHHHHHHh--hhhhcCeeeEeecchhHHHhcCCHHHhhHHHHHHhCCCcccCCcHHHHHHHHH
Confidence 4678999999999999999998764 11235699999999999999999999998887544 44688999999999
Q ss_pred hhhcccccCCCC
Q 014788 120 LETWGLINYFAS 131 (418)
Q Consensus 120 Le~wGlINy~~~ 131 (418)
+.+||+||++..
T Consensus 256 ~~~~~~~~~~~~ 267 (852)
T 2xag_A 256 LERHGLINFGIY 267 (852)
T ss_dssp HHHTTSSSCSSC
T ss_pred HHHHHHHhcCcc
Confidence 999999998877
No 50
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.07 E-value=0.0007 Score=55.84 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHh-----CCCCHHHHHHHHhc
Q 014788 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHV-----SGKSEKDCITHFIK 256 (418)
Q Consensus 213 ~~~WT~~E~l~LLe~ie~yg~nW~~IA~~V-----gtkT~~eC~~hfl~ 256 (418)
..+||.+|+..|++.+++||-.|--|++.. ++||.++...+|-.
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~ 78 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYH 78 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHH
Confidence 379999999999999999999999999999 47999999999976
No 51
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.86 E-value=0.0013 Score=53.77 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHHhC---CCHHHHHHHhCCCCHHHHHHHHhcC
Q 014788 214 SDWTEKETLQLLEAIMHFG---DDWRKVAQHVSGKSEKDCITHFIKL 257 (418)
Q Consensus 214 ~~WT~~E~l~LLe~ie~yg---~nW~~IA~~VgtkT~~eC~~hfl~L 257 (418)
--||.+|+..+|.+.++-| +-|..||+.+|+||++|...||-+|
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 4699999999999999998 5899999999999999999999885
No 52
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.63 E-value=0.001 Score=53.40 Aligned_cols=45 Identities=18% Similarity=0.425 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------CCHHHHHHHhC----CCCHHHHHHHHhcC
Q 014788 213 RSDWTEKETLQLLEAIMHFG----------DDWRKVAQHVS----GKSEKDCITHFIKL 257 (418)
Q Consensus 213 ~~~WT~~E~l~LLe~ie~yg----------~nW~~IA~~Vg----tkT~~eC~~hfl~L 257 (418)
...||.+|+++||++..... ..|+.||+.+. .||+.||..+|-.|
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 46799999999999986533 27999999985 69999999999884
No 53
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=96.55 E-value=0.0063 Score=51.40 Aligned_cols=70 Identities=20% Similarity=0.359 Sum_probs=60.3
Q ss_pred CCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhccccc
Q 014788 50 SFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLIN 127 (418)
Q Consensus 50 ~~~~ih~iE~~~lpeff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlIN 127 (418)
+.+-+|+-|++..-..= -.|..|+.+.+.||.-...+. .++.++||+.+.-|++-..||++||.+.|+|+
T Consensus 37 g~~LLs~~E~~LCs~lr------L~P~~YL~iK~~Li~E~~k~g--~lkk~dA~~l~kID~~K~~rIydff~~~GWi~ 106 (108)
T 2cuj_A 37 GTEKLNEKEKELCQVVR------LVPGAYLEYKSALLNECHKQG--GLRLAQARALIKIDVNKTRKIYDFLIREGYIT 106 (108)
T ss_dssp TTTTSCHHHHHHHHHTT------CCHHHHHHHHHHHHHHHHHSS--CCCHHHHHHHHTSCHHHHHHHHHHHHTTTSSC
T ss_pred CchhcCHHHHHHHHHhC------CCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHhcccHHHHHHHHHHHHHcCCCC
Confidence 56789999998876433 369999999999999986643 49999999989999999999999999999996
No 54
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=96.49 E-value=0.0052 Score=50.20 Aligned_cols=70 Identities=20% Similarity=0.359 Sum_probs=59.6
Q ss_pred CCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhccccc
Q 014788 50 SFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLIN 127 (418)
Q Consensus 50 ~~~~ih~iE~~~lpeff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlIN 127 (418)
+.+-+|+-|++..-..= -.|..|+.+.+.||.-...+. .++.++||+.+.-|++-..||++||.+.|+|+
T Consensus 19 ~~~lLs~~E~~LC~~lr------L~P~~YL~~K~~li~E~~~~g--~l~k~da~~~~kiD~~K~~~iydf~~~~Gwi~ 88 (90)
T 2aqe_A 19 GTEKLNEKEKELCQVVR------LVPGAYLEYKSALLNECHKQG--GLRLAQARALIKIDVNKTRKIYDFLIREGYIT 88 (90)
T ss_dssp STTTSCHHHHHHHHHTT------CCHHHHHHHHHHHHHHHHHHS--CCCHHHHHTTSSSSSHHHHHHHHHHHHTTSSC
T ss_pred CchhcCHHHHHHHHHhC------CCHHHHHHHHHHHHHHHHHcC--CCcHHHHHHHHcccHHHHHHHHHHHHHcCCCC
Confidence 45688999998876432 369999999999999886643 39999999888899999999999999999996
No 55
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=96.30 E-value=0.0094 Score=48.48 Aligned_cols=70 Identities=14% Similarity=0.285 Sum_probs=59.6
Q ss_pred CCCCCCHHHHhhCccccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhcccc
Q 014788 50 SFDSISECEVKFLPEFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLI 126 (418)
Q Consensus 50 ~~~~ih~iE~~~lpeff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlI 126 (418)
+.+-+|+-|++..-.. .-.|..|+.+.+.||.-+..+ ...++.++||+.+.-|++-..||++||.+.|+|
T Consensus 19 ~~~lLs~~E~~LC~~l------rL~P~~YL~~K~~Li~E~~k~-g~~lkk~da~~~~kiD~~K~~~iydf~~~~Gwi 88 (88)
T 2elj_A 19 DYALLSNDEQQLCIQL------KILPKPYLVLKEVMFRELLKT-GGNLSKSACRELLNIDPIKANRIYDFFQSQNWM 88 (88)
T ss_dssp TCSSSCHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHH-SSCCCHHHHHHHTTSCHHHHHHHHHHHHHTTCC
T ss_pred CchhcCHHHHHHHHHh------CCCHHHHHHHHHHHHHHHHHh-CCCccHHHHHHHHcccHHHHHHHHHHHHHcCCC
Confidence 4568899999887543 236999999999999988764 457999999988889999999999999999987
No 56
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.25 E-value=0.0036 Score=47.28 Aligned_cols=44 Identities=14% Similarity=0.348 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC-------C--CHHHHHH-HhCCCCHHHHHHHHhc
Q 014788 213 RSDWTEKETLQLLEAIMHFG-------D--DWRKVAQ-HVSGKSEKDCITHFIK 256 (418)
Q Consensus 213 ~~~WT~~E~l~LLe~ie~yg-------~--nW~~IA~-~VgtkT~~eC~~hfl~ 256 (418)
...||.+|+..|++-|.+|. | -|+++++ .+..+|-..|+.||++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k 55 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHH
Confidence 35799999999999999992 3 4999999 7989999999999986
No 57
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=94.97 E-value=0.0012 Score=51.36 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CCHHHHHHHhCCCCHHHHHHHHhcC
Q 014788 213 RSDWTEKETLQLLEAIMHFG---DDWRKVAQHVSGKSEKDCITHFIKL 257 (418)
Q Consensus 213 ~~~WT~~E~l~LLe~ie~yg---~nW~~IA~~VgtkT~~eC~~hfl~L 257 (418)
---||.+|+..+|...++-| .-|..||+.+ +||++|...+|.+|
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 35799999999999999999 4899999999 79999999999986
No 58
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.91 E-value=0.0068 Score=59.78 Aligned_cols=41 Identities=29% Similarity=0.572 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCHHHHHHHhCCCCHHHHHHHH
Q 014788 214 SDWTEKETLQLLEAIMHFG-DDWRKVAQHVSGKSEKDCITHF 254 (418)
Q Consensus 214 ~~WT~~E~l~LLe~ie~yg-~nW~~IA~~VgtkT~~eC~~hf 254 (418)
..||..+-..++.|.++|| ++|..||..|++||++|...|+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~ 152 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYN 152 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 5799999999999999999 8999999999999999996554
No 59
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=95.84 E-value=0.0014 Score=68.16 Aligned_cols=49 Identities=14% Similarity=0.337 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHhCCCCHHHHHHHHhcCCCCC
Q 014788 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVSGKSEKDCITHFIKLPFGQ 261 (418)
Q Consensus 213 ~~~WT~~E~l~LLe~ie~yg~nW~~IA~~VgtkT~~eC~~hfl~LPIeD 261 (418)
...||.+|..++.+++.+||.||..|+++|++||..+|+.+|..-=-..
T Consensus 189 ~d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yYY~WKKt~ 237 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTR 237 (482)
T ss_dssp -------------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHhccccccc
Confidence 4589999999999999999999999999999999999999987644333
No 60
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.43 E-value=0.021 Score=46.97 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHHHhC-----CCCHHHHHHHHhc
Q 014788 213 RSDWTEKETLQLLEAIMHFGDDWRKVAQHVS-----GKSEKDCITHFIK 256 (418)
Q Consensus 213 ~~~WT~~E~l~LLe~ie~yg~nW~~IA~~Vg-----tkT~~eC~~hfl~ 256 (418)
...||.+|+..|++.+++|+-.|--|++... .||.++-+.||.+
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~ 78 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYH 78 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHH
Confidence 3689999999999999999999999999874 6999999999976
No 61
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.38 E-value=0.0095 Score=45.49 Aligned_cols=47 Identities=17% Similarity=0.443 Sum_probs=34.0
Q ss_pred ccccCCCCc-cccccccccC-CCccchhhhhccCCCCCCC-CCCCccccc
Q 014788 161 RLCNGCKTL-CTIACFACDK-YDLTLCARCYVRGNHRVGV-SSSDFRRVE 207 (418)
Q Consensus 161 ~~C~~C~~~-c~~~~~~c~k-~d~~LC~~Cf~~G~~~~~~-~s~dF~ki~ 207 (418)
..|++|+.. +.-.+|.|.. .|++||..||..|.....+ ..|.|+++.
T Consensus 12 ~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~ 61 (63)
T 2e5r_A 12 VECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYT 61 (63)
T ss_dssp SCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEEC
T ss_pred CCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEe
Confidence 689999975 5545555532 3788999999999875544 678887653
No 62
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=95.02 E-value=0.0048 Score=51.25 Aligned_cols=54 Identities=26% Similarity=0.517 Sum_probs=37.0
Q ss_pred cccccCCCC-cccccccccc-CCCccchhhhhccCCCCCCCCCCCccccccCcccCCCCCHHH
Q 014788 160 KRLCNGCKT-LCTIACFACD-KYDLTLCARCYVRGNHRVGVSSSDFRRVEISEEARSDWTEKE 220 (418)
Q Consensus 160 k~~C~~C~~-~c~~~~~~c~-k~d~~LC~~Cf~~G~~~~~~~s~dF~ki~~~~~~~~~WT~~E 220 (418)
...|++|+. .+.-.+|.|. ..|++||..||..|. +..|.|.++... ...|+..|
T Consensus 31 gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~~----H~~H~f~~i~~~---~~~w~~~e 86 (98)
T 2dip_A 31 GIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSYC----HLSHTFTFREKR---NQKWRSLE 86 (98)
T ss_dssp CCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTTS----GGGSCEEECCSS---SCCCEECC
T ss_pred CCCCcCCCCCCcccCeEECCCCCCccHHHHHHccCC----CCCCCeeEecCC---CCCCcccc
Confidence 478999996 3444455553 237889999999986 367899887643 34576543
No 63
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=94.40 E-value=0.037 Score=44.40 Aligned_cols=50 Identities=14% Similarity=0.235 Sum_probs=34.9
Q ss_pred cccccCCCC-ccccccccccC-CC---ccchhhhhccCCCCC-CCCCCCccccccC
Q 014788 160 KRLCNGCKT-LCTIACFACDK-YD---LTLCARCYVRGNHRV-GVSSSDFRRVEIS 209 (418)
Q Consensus 160 k~~C~~C~~-~c~~~~~~c~k-~d---~~LC~~Cf~~G~~~~-~~~s~dF~ki~~~ 209 (418)
...|++|+. .+.-.+|.|.. .+ ++||..||..|.+.. +...|.|.++...
T Consensus 21 ~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~ 76 (82)
T 2fc7_A 21 GFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRS 76 (82)
T ss_dssp SCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSC
T ss_pred cCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCC
Confidence 568999996 34434455532 25 889999999988644 4478999877643
No 64
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.23 E-value=0.06 Score=49.42 Aligned_cols=31 Identities=23% Similarity=0.569 Sum_probs=27.4
Q ss_pred cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHh
Q 014788 212 ARSDWTEKETLQLLEAIMHFG-DDWRKVAQHV 242 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg-~nW~~IA~~V 242 (418)
....||.+|+..||-||.+|| |+|+.|-.-.
T Consensus 133 ~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 133 FDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred CCCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 346799999999999999999 9999997754
No 65
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=93.16 E-value=0.06 Score=52.24 Aligned_cols=31 Identities=26% Similarity=0.706 Sum_probs=27.9
Q ss_pred ccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHH
Q 014788 211 EARSDWTEKETLQLLEAIMHFG-DDWRKVAQH 241 (418)
Q Consensus 211 ~~~~~WT~~E~l~LLe~ie~yg-~nW~~IA~~ 241 (418)
.....|+.+|+..||-||.+|| |+|+.|-.-
T Consensus 166 ~W~c~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 166 NWSSNWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCCCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 3457899999999999999999 999999874
No 66
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=91.72 E-value=0.3 Score=37.43 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---HHHHHHHhC--CCCHHHHHHHHhc
Q 014788 213 RSDWTEKETLQLLEAIMHFGDD---WRKVAQHVS--GKSEKDCITHFIK 256 (418)
Q Consensus 213 ~~~WT~~E~l~LLe~ie~yg~n---W~~IA~~Vg--tkT~~eC~~hfl~ 256 (418)
.-.||.+.-..+++||++.|.+ |..|-+.++ +.|.+++..|.-.
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4579999999999999999955 899999988 4699999988754
No 67
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.36 E-value=0.19 Score=45.98 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CCHHHHHHHh--CCCCHHHHHHHH
Q 014788 213 RSDWTEKETLQLLEAIMHFG---DDWRKVAQHV--SGKSEKDCITHF 254 (418)
Q Consensus 213 ~~~WT~~E~l~LLe~ie~yg---~nW~~IA~~V--gtkT~~eC~~hf 254 (418)
-..||..|...|+.|+.+|| +.|+.|++.. ..||.++....+
T Consensus 7 ~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~ 53 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLG 53 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHH
Confidence 46899999999999999999 6899999975 479998877633
No 68
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=90.61 E-value=0.081 Score=38.79 Aligned_cols=42 Identities=26% Similarity=0.584 Sum_probs=30.1
Q ss_pred cccccCCCCccccccccccC-CCccchhhhhccCCCCCCCCCCCccccc
Q 014788 160 KRLCNGCKTLCTIACFACDK-YDLTLCARCYVRGNHRVGVSSSDFRRVE 207 (418)
Q Consensus 160 k~~C~~C~~~c~~~~~~c~k-~d~~LC~~Cf~~G~~~~~~~s~dF~ki~ 207 (418)
.+.|++|+..++ .+|.|.. .|++||..||..+.. .|.+.++.
T Consensus 6 ~~~Cd~C~~~ig-~R~~C~~C~dyDLC~~C~~~~~H-----~H~m~~~~ 48 (52)
T 1tot_A 6 VYTCNECKHHVE-TRWHCTVCEDYDLCINCYNTKSH-----THKMVKWG 48 (52)
T ss_dssp CEEETTTTEEES-SEEEESSSSSCEECHHHHHHHCC-----CSSEEEEC
T ss_pred EEECCCCCCCCc-ceEEcCCCCCchhHHHHHhCCCC-----CCceEEec
Confidence 467999998754 3455532 378899999999874 46666654
No 69
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=89.22 E-value=0.3 Score=48.09 Aligned_cols=47 Identities=13% Similarity=0.213 Sum_probs=40.2
Q ss_pred cCCCCCHHHHHHHHHHHHHhC----CCHHHHHH------------HhCCCCHHHHHHHHhcCC
Q 014788 212 ARSDWTEKETLQLLEAIMHFG----DDWRKVAQ------------HVSGKSEKDCITHFIKLP 258 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg----~nW~~IA~------------~VgtkT~~eC~~hfl~LP 258 (418)
.+..||.+|+..||-++.+|| |+|+.|-. ++-+||+.|+..|.-.|.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi 273 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI 273 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 356899999999999999999 78999984 455899999988877654
No 70
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=87.34 E-value=0.58 Score=47.25 Aligned_cols=40 Identities=15% Similarity=0.424 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHHhC-CCHHHHHHHhC-CCCHHHHHHH
Q 014788 214 SDWTEKETLQLLEAIMHFG-DDWRKVAQHVS-GKSEKDCITH 253 (418)
Q Consensus 214 ~~WT~~E~l~LLe~ie~yg-~nW~~IA~~Vg-tkT~~eC~~h 253 (418)
.+||..+-..++.|.++|| +|-..||..|+ +||++|...+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y 165 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAY 165 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHH
Confidence 6899999999999999999 89999999998 8999998844
No 71
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=73.80 E-value=3.5 Score=41.62 Aligned_cols=46 Identities=15% Similarity=0.291 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CCHHHHHHHh------------CCCCHHHHHHHHhcCC
Q 014788 213 RSDWTEKETLQLLEAIMHFG----DDWRKVAQHV------------SGKSEKDCITHFIKLP 258 (418)
Q Consensus 213 ~~~WT~~E~l~LLe~ie~yg----~nW~~IA~~V------------gtkT~~eC~~hfl~LP 258 (418)
+..||.+|+..||-+|.+|| |+|+.|-..| .+||+.++..|...|.
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi 289 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLL 289 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 56899999999999999999 7899997664 4799999988876654
No 72
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=70.66 E-value=3.9 Score=31.17 Aligned_cols=47 Identities=17% Similarity=0.325 Sum_probs=37.4
Q ss_pred HHHHHHHHHhCCCcceeHHHHHHhc-----cchhHHHHHHHHhhhhcccccC
Q 014788 82 RDSIVKHYRENPSRKITFTDVRRTL-----VGDVGSIRRVFDFLETWGLINY 128 (418)
Q Consensus 82 RN~ii~~yr~np~~yLT~t~~r~~l-----~gDv~~i~Rvh~FLe~wGlINy 128 (418)
|-.|++....++...+|+.+.-..+ .-+...|.|....|+..|+|.-
T Consensus 19 r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 19 RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 5667776655432689999988777 4578999999999999999963
No 73
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=69.80 E-value=5.6 Score=29.72 Aligned_cols=52 Identities=6% Similarity=0.045 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhccccc
Q 014788 75 PRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLIN 127 (418)
Q Consensus 75 p~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlIN 127 (418)
|..-.+.|..|++....+ ..++|.++.-+.+.-.-..+.|+..=|+..|+|-
T Consensus 5 ~~~m~~~~~~IL~~L~~~-~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~ 56 (67)
T 2heo_A 5 LSTGDNLEQKILQVLSDD-GGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVS 56 (67)
T ss_dssp ----CHHHHHHHHHHHHH-CSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEE
T ss_pred cccccHHHHHHHHHHHHc-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEe
Confidence 433345688999988774 3679999998888889999999999999999984
No 74
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=62.94 E-value=9.1 Score=32.28 Aligned_cols=46 Identities=24% Similarity=0.384 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCcceeHHHHHHhcc-----chhHHHHHHHHhhhhccccc
Q 014788 82 RDSIVKHYRENPSRKITFTDVRRTLV-----GDVGSIRRVFDFLETWGLIN 127 (418)
Q Consensus 82 RN~ii~~yr~np~~yLT~t~~r~~l~-----gDv~~i~Rvh~FLe~wGlIN 127 (418)
|-.|++....++...+|+.+.-..|. -+...|.|...+|+..|||.
T Consensus 20 R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 20 RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 77788877765437999999877773 47899999999999999997
No 75
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=59.75 E-value=13 Score=31.02 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhCCCcceeHHHHHHhcc-----chhHHHHHHHHhhhhcccccC
Q 014788 77 VYRYYRDSIVKHYRENPSRKITFTDVRRTLV-----GDVGSIRRVFDFLETWGLINY 128 (418)
Q Consensus 77 ~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~-----gDv~~i~Rvh~FLe~wGlINy 128 (418)
+.-.-|-.|++....+ ...+|+.+.-..|. -+...+.|...+|+..|||.=
T Consensus 8 r~T~qR~~Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 8 RSTRQRAAISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHHHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred CCCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEE
Confidence 4455688899987764 67999999877773 478999999999999999963
No 76
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=57.71 E-value=13 Score=35.87 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CCHHHHHHH--hCCCCHHHHHHHH
Q 014788 213 RSDWTEKETLQLLEAIMHFG---DDWRKVAQH--VSGKSEKDCITHF 254 (418)
Q Consensus 213 ~~~WT~~E~l~LLe~ie~yg---~nW~~IA~~--VgtkT~~eC~~hf 254 (418)
...||+.|...|+.++.+|| +.|+.|+.- +..|+.+....-+
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~ 49 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETY 49 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHH
Confidence 46899999999999999999 689999875 3357766554433
No 77
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=54.71 E-value=11 Score=32.52 Aligned_cols=47 Identities=15% Similarity=0.343 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCcceeHHHHHHhcc-----chhHHHHHHHHhhhhcccccC
Q 014788 82 RDSIVKHYRENPSRKITFTDVRRTLV-----GDVGSIRRVFDFLETWGLINY 128 (418)
Q Consensus 82 RN~ii~~yr~np~~yLT~t~~r~~l~-----gDv~~i~Rvh~FLe~wGlINy 128 (418)
|-.|++....++...+|+.+.-..|. -+...|.|...+|+..|||.-
T Consensus 19 R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 70 (150)
T 2w57_A 19 RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTR 70 (150)
T ss_dssp HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 67788876654337999999877773 378999999999999999963
No 78
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=54.62 E-value=17 Score=34.57 Aligned_cols=24 Identities=17% Similarity=0.276 Sum_probs=22.0
Q ss_pred CHHHHHHHhCCCCHHHHHHHHhcC
Q 014788 234 DWRKVAQHVSGKSEKDCITHFIKL 257 (418)
Q Consensus 234 nW~~IA~~VgtkT~~eC~~hfl~L 257 (418)
-|..||++..++|....+.+|..+
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKf 196 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKF 196 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCChhhHHHHHHHH
Confidence 599999999999999999999853
No 79
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=54.60 E-value=16 Score=31.34 Aligned_cols=48 Identities=17% Similarity=0.373 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhCCCcceeHHHHHHhcc-----chhHHHHHHHHhhhhccccc
Q 014788 79 RYYRDSIVKHYRENPSRKITFTDVRRTLV-----GDVGSIRRVFDFLETWGLIN 127 (418)
Q Consensus 79 ~~~RN~ii~~yr~np~~yLT~t~~r~~l~-----gDv~~i~Rvh~FLe~wGlIN 127 (418)
-.-|-.|++....+ ...+|+.+.-..|. -+...|.|...+|+..|||.
T Consensus 26 T~qR~~IL~~l~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 26 SKQREEVVSVLYRS-GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHHHHHHHHC-SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 34477888888776 45999999877763 37899999999999999997
No 80
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=54.44 E-value=19 Score=27.22 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=38.3
Q ss_pred HHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhcccccC
Q 014788 82 RDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINY 128 (418)
Q Consensus 82 RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy 128 (418)
|..|+.....++ .+|..+.-+.+.-....+.|...-|+..|+|-.
T Consensus 2 r~~Il~~L~~~~--~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 2 KNEILEFLNRHN--GGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHHHHSC--CCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 677888776653 589999988888889999999999999999974
No 81
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=53.09 E-value=6.6 Score=30.20 Aligned_cols=45 Identities=24% Similarity=0.557 Sum_probs=33.6
Q ss_pred cccccCCCCccccccccccCCCccchhhhhccCCCCCCCCCCCcccc
Q 014788 160 KRLCNGCKTLCTIACFACDKYDLTLCARCYVRGNHRVGVSSSDFRRV 206 (418)
Q Consensus 160 k~~C~~C~~~c~~~~~~c~k~d~~LC~~Cf~~G~~~~~~~s~dF~ki 206 (418)
...|..|..+-+++|.-|+. -.-|.+||.++........|..++.
T Consensus 8 ~pWC~ICneDAtlrC~gCdg--DLYC~rC~rE~H~~~d~r~Hk~v~y 52 (67)
T 2d8v_A 8 LPWCCICNEDATLRCAGCDG--DLYCARCFREGHDNFDLKEHQTSPY 52 (67)
T ss_dssp CSSCTTTCSCCCEEETTTTS--EEECSSHHHHHTTTSSTTTCCEECC
T ss_pred CCeeEEeCCCCeEEecCCCC--ceehHHHHHHHccchhhhccceeec
Confidence 46799999998899999973 3579999999886555555544443
No 82
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=50.85 E-value=14 Score=27.00 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCC
Q 014788 218 EKETLQLLEAIMHFGDDWRKVAQHVSG 244 (418)
Q Consensus 218 ~~E~l~LLe~ie~yg~nW~~IA~~Vgt 244 (418)
.-|...+.++++.++||+.+.|+.+|-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 347778899999999999999999994
No 83
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=50.38 E-value=21 Score=30.37 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=37.9
Q ss_pred HHHHHHHHHhCCCcceeHHHHHHhcc-----chhHHHHHHHHhhhhcccccC
Q 014788 82 RDSIVKHYRENPSRKITFTDVRRTLV-----GDVGSIRRVFDFLETWGLINY 128 (418)
Q Consensus 82 RN~ii~~yr~np~~yLT~t~~r~~l~-----gDv~~i~Rvh~FLe~wGlINy 128 (418)
|-.|++..... ...+|+.+.-..|. -+...|.|...+|...|||.-
T Consensus 24 R~~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 24 RHAILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEE
Confidence 67788877664 56899999877773 378899999999999999973
No 84
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=47.72 E-value=23 Score=29.98 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhCCCcceeHHHHHHhcc-----chhHHHHHHHHhhhhccccc
Q 014788 77 VYRYYRDSIVKHYRENPSRKITFTDVRRTLV-----GDVGSIRRVFDFLETWGLIN 127 (418)
Q Consensus 77 ~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~-----gDv~~i~Rvh~FLe~wGlIN 127 (418)
+.-.-|..|++....+ ...+|+.+.-..|. -+...|.|...+|+.-|||.
T Consensus 11 r~T~qR~~Il~~L~~~-~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 11 RATRQRAAVSAALQEV-EEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp HHHHHHHHHHHHHTTC-SSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred ccCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4556688899977665 46999999877764 37899999999999999996
No 85
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=46.22 E-value=35 Score=27.04 Aligned_cols=54 Identities=11% Similarity=0.129 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhcccccCCCCcccccc
Q 014788 80 YYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKTLKW 137 (418)
Q Consensus 80 ~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~~kP~~~ 137 (418)
..+..||..-+.++ +|+.+.-+.|.-....+.|...=||+-|+|-+....+| .|
T Consensus 17 ~~~~~IL~lL~~~g---~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~~~~PP-~W 70 (82)
T 1oyi_A 17 EIVCEAIKTIGIEG---ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSSDDIPP-RW 70 (82)
T ss_dssp HHHHHHHHHHSSST---EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEECSSSSC-EE
T ss_pred HHHHHHHHHHHHcC---CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCC-cc
Confidence 45778887777665 99999999999888999999999999999999865544 44
No 86
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=45.70 E-value=37 Score=28.29 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcce-eHHHHHHhccchhHHHHHHHHhhhhcccccCCC
Q 014788 76 RVYRYYRDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYFA 130 (418)
Q Consensus 76 ~~Y~~~RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~ 130 (418)
++|-.+|+.|++ =+..|...| |..+.-..+.---..+.+.+.-|+.-|||-...
T Consensus 18 QI~~~i~~~I~~-G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~ 72 (134)
T 4ham_A 18 QIVQKIKEQVVK-GVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVK 72 (134)
T ss_dssp HHHHHHHHHHHH-TSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHc-CCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEc
Confidence 566666776665 334689999 888877788888999999999999999997553
No 87
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=44.29 E-value=23 Score=28.74 Aligned_cols=55 Identities=7% Similarity=0.045 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCcce-eHHHHHHhccchhHHHHHHHHhhhhcccccCCC
Q 014788 75 PRVYRYYRDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYFA 130 (418)
Q Consensus 75 p~~Y~~~RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~ 130 (418)
-++|-.+|+.|++- +..|...| |..+.-+.+.---..+.+.+.-|+..|||-...
T Consensus 12 ~~i~~~i~~~I~~g-~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~ 67 (113)
T 3tqn_A 12 QQLRDKIVEAIIDG-SYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRR 67 (113)
T ss_dssp HHHHHHHHHHHHHT-SSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHHcC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 35666777776652 34578889 888888888878899999999999999996543
No 88
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=43.58 E-value=29 Score=28.87 Aligned_cols=54 Identities=6% Similarity=0.116 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCcce-eHHHHHHhccchhHHHHHHHHhhhhcccccCC
Q 014788 75 PRVYRYYRDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (418)
Q Consensus 75 p~~Y~~~RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 129 (418)
..+|-.+|+.|+.- ...|...| +..+..+.+.---..+.+.+.-|+..|||-..
T Consensus 14 ~~i~~~l~~~I~~g-~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~ 68 (126)
T 3by6_A 14 LQLVDRIKNEVATD-VLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTI 68 (126)
T ss_dssp HHHHHHHHHHHHTT-SSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 35777777777753 34578899 99998888888889999999999999999543
No 89
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=43.58 E-value=22 Score=30.28 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCcceeHHHHHHhcc-----chhHHHHHHHHhhhhcccccC
Q 014788 82 RDSIVKHYRENPSRKITFTDVRRTLV-----GDVGSIRRVFDFLETWGLINY 128 (418)
Q Consensus 82 RN~ii~~yr~np~~yLT~t~~r~~l~-----gDv~~i~Rvh~FLe~wGlINy 128 (418)
|..|++....++ .+|+.+.-..|. -+...|.|...+|..-|||.=
T Consensus 21 R~~Il~~l~~~~--h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 70 (145)
T 3eyy_A 21 RQLVLEAVDTLE--HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSH 70 (145)
T ss_dssp HHHHHHHHHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEE
Confidence 667777766654 899999866653 378999999999999999963
No 90
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=41.91 E-value=45 Score=27.34 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=37.5
Q ss_pred HHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhcccccCC
Q 014788 83 DSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (418)
Q Consensus 83 N~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 129 (418)
-.|+..-..++..++|+.+.-+.+.-+...+.|...-|+..|+|--.
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~ 75 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRS 75 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 34554444555545999999988988999999999999999999754
No 91
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=39.60 E-value=25 Score=29.45 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCcce-eHHHHHHhccchhHHHHHHHHhhhhcccccCC
Q 014788 75 PRVYRYYRDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (418)
Q Consensus 75 p~~Y~~~RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 129 (418)
-.+|-.+|+.|+.- +..|...| |..+.-+.+.---..+.+.+.-|+..|||-..
T Consensus 7 ~~i~~~i~~~I~~g-~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 7 KQIASLIEDSIVDG-TLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp HHHHHHHHHHHHTT-SSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHHhC-CCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 46788888888764 45688999 89888888888889999999999999999654
No 92
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=38.34 E-value=34 Score=29.78 Aligned_cols=59 Identities=10% Similarity=0.196 Sum_probs=42.4
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhcc-------chhHHHHHHHHhhhhcccccC
Q 014788 64 EFFDSRSPSKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLV-------GDVGSIRRVFDFLETWGLINY 128 (418)
Q Consensus 64 eff~~~~~~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~-------gDv~~i~Rvh~FLe~wGlINy 128 (418)
+++..+.--.||. |-.|++....+ ...+|+.+.-..|. -+...|.|...+|+.-|||.=
T Consensus 22 ~~L~~~g~r~T~q-----R~~IL~~L~~~-~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 22 KILRQGGLKYTKQ-----REVLLKTLYHS-DTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHTCCCCHH-----HHHHHHHHHSC-CSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHH-----HHHHHHHHHhC-CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 3444333334554 77788876665 48999999865553 267899999999999999963
No 93
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=37.00 E-value=56 Score=24.89 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=32.5
Q ss_pred cceeHHHHHHhccchhHHHHHHHHhhhhcccccCCCC
Q 014788 95 RKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (418)
Q Consensus 95 ~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 131 (418)
..+|+++.-+.+.-+...+.|+..-|+..|+|.....
T Consensus 35 ~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 35 KPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 4599999988888899999999999999999986543
No 94
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=36.81 E-value=53 Score=25.09 Aligned_cols=59 Identities=24% Similarity=0.219 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHhCC-CcceeHHHHHHhccchhHHHHHHHHhhhhcccccCCCCcccccc
Q 014788 78 YRYYRDSIVKHYRENP-SRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKTLKW 137 (418)
Q Consensus 78 Y~~~RN~ii~~yr~np-~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~~kP~~~ 137 (418)
.-+....|+..-+.|+ ..++|+.+.-+.|.-+...|.|...=|++-|+|-... .+|..|
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g-~~~~~W 71 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA-GTPPLW 71 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEEC-SSSCEE
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-CCCCce
Confidence 3344677888888887 7899999999999888899999999999999996543 344444
No 95
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=35.62 E-value=51 Score=26.52 Aligned_cols=39 Identities=3% Similarity=0.144 Sum_probs=31.8
Q ss_pred HHHHhCCCcceeHHHHHHhccch----hHHHHHHHHhhhhcccccC
Q 014788 87 KHYRENPSRKITFTDVRRTLVGD----VGSIRRVFDFLETWGLINY 128 (418)
Q Consensus 87 ~~yr~np~~yLT~t~~r~~l~gD----v~~i~Rvh~FLe~wGlINy 128 (418)
-.|... .+|+.+..+.|..| -..|.|+.+.|+..|||--
T Consensus 43 ~L~~~~---~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R 85 (99)
T 2k4b_A 43 VIWSLG---EARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLST 85 (99)
T ss_dssp HHHHHS---CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEE
T ss_pred HHHhCC---CCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEE
Confidence 346543 58999999888754 6899999999999999964
No 96
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=35.20 E-value=60 Score=26.60 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhcccc
Q 014788 74 NPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLI 126 (418)
Q Consensus 74 tp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlI 126 (418)
.++.|-++++.|.+....+ ..+|+.+.|..+.----...=|..||++.|+.
T Consensus 60 ~~~~~~~~~~~l~~~~~~~--~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~T 110 (121)
T 2pjp_A 60 RNDRIVEFANMIRDLDQEC--GSTCAADFRDRLGVGRKLAIQILEYFDRIGFT 110 (121)
T ss_dssp EHHHHHHHHHHHHHHHHHH--SSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSE
T ss_pred CHHHHHHHHHHHHHHHHHC--CCccHHHHHHHHCCcHHHHHHHHHHHhhcCCe
Confidence 4899999999999988885 78999999988853334445799999999874
No 97
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=34.19 E-value=46 Score=27.65 Aligned_cols=40 Identities=10% Similarity=-0.029 Sum_probs=34.6
Q ss_pred CCCcceeHHHHHHhccchhHHHHHHHHhhhhcccccCCCC
Q 014788 92 NPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (418)
Q Consensus 92 np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 131 (418)
.+..++|..+..+.+.-+...+.|+.+.|+.-|+|-...+
T Consensus 47 ~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 47 EGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp TTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred cCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 3556789999998898899999999999999999987655
No 98
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=33.93 E-value=47 Score=26.96 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=32.1
Q ss_pred HhCCCcceeHHHHHH-hccchhHHHHHHHHhhhhccccc
Q 014788 90 RENPSRKITFTDVRR-TLVGDVGSIRRVFDFLETWGLIN 127 (418)
Q Consensus 90 r~np~~yLT~t~~r~-~l~gDv~~i~Rvh~FLe~wGlIN 127 (418)
..+| +.|.++... .+.-|...+.|-...|++-|||=
T Consensus 26 ~~~~--~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 26 AKKD--FITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp HHST--TBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE
T ss_pred HHCC--CCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee
Confidence 3445 999999999 78889999999999999999985
No 99
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=33.85 E-value=61 Score=25.19 Aligned_cols=55 Identities=24% Similarity=0.206 Sum_probs=42.3
Q ss_pred HHHHHHHHHhCC-CcceeHHHHHHhccchhHHHHHHHHhhhhcccccCCCCcccccc
Q 014788 82 RDSIVKHYRENP-SRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKTLKW 137 (418)
Q Consensus 82 RN~ii~~yr~np-~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~~kP~~~ 137 (418)
...|++..+.|+ ..++|+.+.-+.|.-.-..|.|...=|++-|+|-..- .+|..|
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g-~~~~~W 67 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEA-GTPPLW 67 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEES-SSSCEE
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecC-CCCCee
Confidence 444555555665 8899999999889888889999999999999997643 345444
No 100
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=33.49 E-value=75 Score=25.78 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=41.4
Q ss_pred CChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhcccccCC
Q 014788 73 KNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (418)
Q Consensus 73 ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 129 (418)
-|+..|..++ .|+...+ ....+|+++.-+.+.-+...+.|+..-|+..|||...
T Consensus 11 lt~~~~~~L~-~l~~l~~--~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~ 64 (139)
T 2x4h_A 11 LSRREFSYLL-TIKRYND--SGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKK 64 (139)
T ss_dssp CCHHHHHHHH-HHHHHHT--TTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHH-HHHHHHh--cCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEec
Confidence 3566665555 3444333 3567999999988988999999999999999999864
No 101
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=33.15 E-value=47 Score=27.44 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCcce-eHHHHHHhccchhHHHHHHHHhhhhcccccCC
Q 014788 75 PRVYRYYRDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (418)
Q Consensus 75 p~~Y~~~RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 129 (418)
.++|-.+|+.|++ -...|...| |..+..+.+.--...+.+.+.-|+.-|+|--.
T Consensus 16 ~~i~~~i~~~I~~-g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 70 (125)
T 3neu_A 16 SQISDWMKKQMIT-GEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125)
T ss_dssp HHHHHHHHHHHHT-TSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHh-CCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 3566666766665 233578888 58888888887889999999999999999654
No 102
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=33.03 E-value=82 Score=24.28 Aligned_cols=55 Identities=7% Similarity=0.081 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhcccccCC
Q 014788 75 PRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (418)
Q Consensus 75 p~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 129 (418)
..++.+|-++|-.....+-..+.|+.+.-..+.--..++.|=...||..|+|--.
T Consensus 3 ~~r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 3 ESIVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp CTHHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEec
Confidence 3466677777666545532456899998887765577799999999999999643
No 103
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=33.00 E-value=47 Score=26.01 Aligned_cols=57 Identities=14% Similarity=0.083 Sum_probs=37.1
Q ss_pred ChHHHHHH----HHHHHHHHHhCCCcceeHHHHHHhcc-----c-------hhHHHHHHHHhhhhcccccCCC
Q 014788 74 NPRVYRYY----RDSIVKHYRENPSRKITFTDVRRTLV-----G-------DVGSIRRVFDFLETWGLINYFA 130 (418)
Q Consensus 74 tp~~Y~~~----RN~ii~~yr~np~~yLT~t~~r~~l~-----g-------Dv~~i~Rvh~FLe~wGlINy~~ 130 (418)
.+..+..| +++|+..+-.-|-..||..+++.-+. | -...+..++.|.-.||+|...+
T Consensus 23 ~~~T~~~y~~~l~~~i~~~lg~~~l~~It~~~i~~~~~~l~~~~s~~t~~~~~~~l~~~~~~Av~~~~i~~NP 95 (118)
T 2kj8_A 23 SVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTGRAKYNP 95 (118)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSBTTSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTTSCSCCS
T ss_pred CHHHHHHHHHHHHHHhhHHhcCCcHHHCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHcCCcccCc
Confidence 44444443 44555656556778899988876432 1 2355778888999999997543
No 104
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=32.44 E-value=32 Score=31.53 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=48.5
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhcccccCC
Q 014788 72 SKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (418)
Q Consensus 72 ~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 129 (418)
+..+.+|-.||+.|+.- +..|...|+..+.-..+.---..|.+-..-|+.-|||-..
T Consensus 26 s~~~~v~~~L~~~I~~g-~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~ 82 (237)
T 3c7j_A 26 LARTVIEEKLRNAIIDG-SLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVE 82 (237)
T ss_dssp GHHHHHHHHHHHHHHTS-SSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccHHHHHHHHHHHHHhC-CCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 34567999999999984 4458999999998888888889999999999999999755
No 105
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=32.17 E-value=19 Score=28.39 Aligned_cols=55 Identities=18% Similarity=0.275 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcce-eHHHHHHhccchhHHHHHHHHhhhhcccccCC
Q 014788 74 NPRVYRYYRDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (418)
Q Consensus 74 tp~~Y~~~RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 129 (418)
.-.+|-.+|+.|+.. ...|...| |..+.-+.+.--...+.+.+.-|+..|||-..
T Consensus 13 ~~~l~~~i~~~I~~~-~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 13 YADVATHFRTLIKSG-ELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHHHHHTTTT-SCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHHHHHHHhC-CCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 446777777777762 23467888 99998888887889999999999999999643
No 106
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=32.13 E-value=78 Score=24.69 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhcccccCC
Q 014788 81 YRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (418)
Q Consensus 81 ~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 129 (418)
.|-.|+...... .+|+++..+.+.-+-..+.|...-|+..|||...
T Consensus 22 ~r~~IL~~L~~~---~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~ 67 (114)
T 2oqg_A 22 TRWEILTELGRA---DQSASSLATRLPVSRQAIAKHLNALQACGLVESV 67 (114)
T ss_dssp HHHHHHHHHHHS---CBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcC---CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEE
Confidence 466677765332 3899999888888999999999999999999754
No 107
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=31.88 E-value=72 Score=25.35 Aligned_cols=42 Identities=10% Similarity=0.113 Sum_probs=34.3
Q ss_pred HHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhccccc
Q 014788 84 SIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLIN 127 (418)
Q Consensus 84 ~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlIN 127 (418)
.|++.-+. ...+|+++.-+.|......|.|....|++.|+|-
T Consensus 6 ~Il~~L~~--~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~ 47 (87)
T 2k02_A 6 EVRDMLAL--QGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVV 47 (87)
T ss_dssp HHHHHHHH--SCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 34444444 5789999999999889999999999999999763
No 108
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=30.61 E-value=35 Score=27.51 Aligned_cols=52 Identities=13% Similarity=0.122 Sum_probs=42.6
Q ss_pred HHHHHH--HHHHHHHHHhCCCcce-eHHHHHHhccchhHHHHHHHHhhhhcccccCC
Q 014788 76 RVYRYY--RDSIVKHYRENPSRKI-TFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (418)
Q Consensus 76 ~~Y~~~--RN~ii~~yr~np~~yL-T~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 129 (418)
..|..+ |+.|+..| .|...| |..+.-+.+.---..+.+.+.-|+.-|||-..
T Consensus 22 ~~y~~l~i~~~I~~~l--~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 22 LSYSELEAIEHIFEEL--DGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESR 76 (102)
T ss_dssp SCHHHHHHHHHHTTSS--BTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhhh--cCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 578888 99999433 467777 99998888877888899999999999999654
No 109
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=30.07 E-value=69 Score=25.63 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=34.8
Q ss_pred hCCCcceeHHHHHHhccchhHHHHHHHHhhhhcccccCCCC
Q 014788 91 ENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (418)
Q Consensus 91 ~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 131 (418)
.++...+|+++..+.+.-+...+.|+..=|+..|||--..+
T Consensus 45 ~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~ 85 (141)
T 3bro_A 45 RNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVS 85 (141)
T ss_dssp HTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCC
Confidence 34555799999998898899999999999999999976544
No 110
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=30.05 E-value=76 Score=24.49 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=34.2
Q ss_pred HHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhcccc
Q 014788 84 SIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLI 126 (418)
Q Consensus 84 ~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlI 126 (418)
.|++.-+. ...+++++.-+.|.-....|.|-...|++.|+|
T Consensus 6 ~Il~~L~~--~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 6 QVRDLLAL--RGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHHHHHHH--SCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHH--cCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 34554444 568999999999998999999999999999987
No 111
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=29.92 E-value=82 Score=23.74 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhcccccCCCC
Q 014788 81 YRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (418)
Q Consensus 81 ~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 131 (418)
.|-.|+..-.. ...+|+++..+.+.-+-..+.|...-|+..|+|....+
T Consensus 25 ~~~~il~~l~~--~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~ 73 (99)
T 3cuo_A 25 KRLLILCMLSG--SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRD 73 (99)
T ss_dssp HHHHHHHHHTT--CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHh--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 45566654433 44799999998888899999999999999999986543
No 112
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=29.74 E-value=72 Score=25.56 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=37.3
Q ss_pred HHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhcccccCCCC
Q 014788 87 KHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (418)
Q Consensus 87 ~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 131 (418)
..-..+|...+|+++..+.+.-+...+.|+..=|+..|||--..+
T Consensus 38 ~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~ 82 (139)
T 3eco_A 38 GYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVD 82 (139)
T ss_dssp HHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCC
Confidence 333445667899999998888899999999999999999986544
No 113
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=29.70 E-value=45 Score=26.11 Aligned_cols=29 Identities=3% Similarity=-0.106 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHhCC
Q 014788 216 WTEKETLQLLEAIMHFGDDWRKVAQHVSG 244 (418)
Q Consensus 216 WT~~E~l~LLe~ie~yg~nW~~IA~~Vgt 244 (418)
..+-|...|.++++.++||..+.|+.+|-
T Consensus 38 l~~~Er~~I~~aL~~~~GN~s~AA~~LGI 66 (81)
T 1umq_A 38 ADRVRWEHIQRIYEMCDRNVSETARRLNM 66 (81)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 34457778889999999999999999984
No 114
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=26.75 E-value=74 Score=24.49 Aligned_cols=34 Identities=3% Similarity=0.047 Sum_probs=31.2
Q ss_pred CCcceeHHHHHHhccchhHHHHHHHHhhhhcccc
Q 014788 93 PSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLI 126 (418)
Q Consensus 93 p~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlI 126 (418)
+...+|+++.-+.+.-+-..+.|+..=|+..|||
T Consensus 27 ~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 27 GGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp TTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 4556999999989988999999999999999999
No 115
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=26.08 E-value=77 Score=25.10 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=32.1
Q ss_pred CCcceeHHHHHHhccchhHHHHHHHHhhhhccccc
Q 014788 93 PSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLIN 127 (418)
Q Consensus 93 p~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlIN 127 (418)
.+.-+|..+.++.+.-|...+.|+..-||..|||-
T Consensus 33 g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 33 GNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp CTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 45679999999999999999999999999999996
No 116
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=26.02 E-value=1e+02 Score=23.57 Aligned_cols=44 Identities=16% Similarity=0.127 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhcccccC
Q 014788 81 YRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINY 128 (418)
Q Consensus 81 ~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy 128 (418)
.|-.|+..- . ..+|+++.-+.+.-....+.|...-|+..|||..
T Consensus 32 ~r~~Il~~L-~---~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~ 75 (96)
T 1y0u_A 32 VRRKILRML-D---KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIER 75 (96)
T ss_dssp HHHHHHHHH-H---TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHH-c---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 355677655 3 3489999888887788999999999999999974
No 117
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=25.89 E-value=45 Score=26.05 Aligned_cols=27 Identities=22% Similarity=0.137 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCC
Q 014788 218 EKETLQLLEAIMHFGDDWRKVAQHVSG 244 (418)
Q Consensus 218 ~~E~l~LLe~ie~yg~nW~~IA~~Vgt 244 (418)
.-|...|.++++.++||..+.|+.+|-
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~LGI 76 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLLGW 76 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 447788899999999999999999984
No 118
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=25.46 E-value=1.2e+02 Score=26.71 Aligned_cols=55 Identities=16% Similarity=0.046 Sum_probs=43.6
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhcc--c-hhHHHHHHHHhhhhcccccCCCC
Q 014788 74 NPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLV--G-DVGSIRRVFDFLETWGLINYFAS 131 (418)
Q Consensus 74 tp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~--g-Dv~~i~Rvh~FLe~wGlINy~~~ 131 (418)
....|...++..+. |.. .+.-|..+.++.|. | +-..|-.|..+|...|+||=..+
T Consensus 13 ~~~~~~~a~~~Al~-~Ls--~r~~S~~EL~~KL~~kg~~~~~ie~vl~~L~~~g~ldD~rf 70 (177)
T 3e3v_A 13 LADDISKGYNAALN-YLS--YQLRTRKEVEDKLRSLDIHEDYISEIINKLIDLDLINDKNY 70 (177)
T ss_dssp CHHHHHHHHHHHHH-HHH--SSCCCHHHHHTTSGGGTCCHHHHHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHH-Hhc--cccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 35778888888876 444 56778889998887 3 77889999999999999995444
No 119
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=25.28 E-value=97 Score=23.37 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=31.4
Q ss_pred ceeHHHHHHhccchhHHHHHHHHhhhhcccccCCC
Q 014788 96 KITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFA 130 (418)
Q Consensus 96 yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~ 130 (418)
.+|+++.-+.+.-+...+.|+..-|+..|+|....
T Consensus 34 ~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 34 GMRVSEIARELDLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 48999999888889999999999999999998644
No 120
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=25.18 E-value=71 Score=26.57 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=35.7
Q ss_pred hCCCcceeHHHHHHhccchhHHHHHHHHhhhhcccccCCCC
Q 014788 91 ENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (418)
Q Consensus 91 ~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 131 (418)
..+...+|.++.-+.+.-|-..+.|+.+=|+..|||--..+
T Consensus 46 ~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~ 86 (147)
T 4b8x_A 46 FSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPN 86 (147)
T ss_dssp TSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeec
Confidence 35667899999988898899999999999999999986655
No 121
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=25.00 E-value=91 Score=25.36 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=32.9
Q ss_pred CCcceeHHHHHHhccchhHHHHHHHHhhhhcccccCC
Q 014788 93 PSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (418)
Q Consensus 93 p~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 129 (418)
+...+|..+....+.-....+.||..-|.+.|||...
T Consensus 23 ~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 23 GEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp TSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEec
Confidence 4678999999888888899999999999999999754
No 122
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=24.90 E-value=72 Score=25.35 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=19.1
Q ss_pred cCCCCCHHHHHHHHHHHHHhC
Q 014788 212 ARSDWTEKETLQLLEAIMHFG 232 (418)
Q Consensus 212 ~~~~WT~~E~l~LLe~ie~yg 232 (418)
...-|+++=|..++||+..|.
T Consensus 5 ~e~vW~~~lE~aF~eaL~~yp 25 (82)
T 2hzd_A 5 AEGVWSPDIEQSFQEALSIYP 25 (82)
T ss_dssp GSCCSCHHHHHHHHHHHHHSC
T ss_pred cCCcCCHHHHHHHHHHHHHcC
Confidence 457899999999999999998
No 123
>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=24.79 E-value=46 Score=32.61 Aligned_cols=58 Identities=19% Similarity=0.419 Sum_probs=41.2
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhcc--c--hhHHHHHHHHhhhhcccccCCCC
Q 014788 72 SKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLV--G--DVGSIRRVFDFLETWGLINYFAS 131 (418)
Q Consensus 72 ~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~--g--Dv~~i~Rvh~FLe~wGlINy~~~ 131 (418)
.+-|..|+.+|+.+.+. +. ...|||.+++++... | |-..+..+..||...|.|-|--+
T Consensus 12 ~~iP~sW~~l~~~L~~~-~~-~~~~is~~e~~~i~~~~gl~~~~~~~~~l~~LH~lG~il~f~d 73 (332)
T 3dpt_A 12 TPLAPSWIKVKEKLVEA-TT-AQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIVLYFEA 73 (332)
T ss_dssp -----CHHHHHHHHHHH-HH-HSSEECHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTSSEECTT
T ss_pred CccCHHHHHHHHHHHhh-hc-CCCeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCEEEEecC
Confidence 34689999999999985 44 368999999875322 2 33457889999999999987655
No 124
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=24.71 E-value=1.1e+02 Score=23.65 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhCCCcceeHHHHHHhccc-hhHHHHHHHHhhhhccccc
Q 014788 81 YRDSIVKHYRENPSRKITFTDVRRTLVG-DVGSIRRVFDFLETWGLIN 127 (418)
Q Consensus 81 ~RN~ii~~yr~np~~yLT~t~~r~~l~g-Dv~~i~Rvh~FLe~wGlIN 127 (418)
.++ .|+.|...|...+++.++-..|.. ..-=|.-|..-||.-|||-
T Consensus 16 t~k-Fi~l~~~~~~~~i~l~~aa~~L~v~~kRRiYDI~NVLe~igli~ 62 (76)
T 1cf7_A 16 TTK-FVSLLQEAKDGVLDLKLAADTLAVRQKRRIYDITNVLEGIGLIE 62 (76)
T ss_dssp HHH-HHHHHHHSSTTEEEHHHHHHHTTTCCTHHHHHHHHHHHHHTSEE
T ss_pred HHH-HHHHHHhCCCCcCcHHHHHHHhCCccceehhhHHHHHhHhccee
Confidence 344 456889999999999999888887 5555555566688888884
No 125
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=23.80 E-value=43 Score=25.80 Aligned_cols=23 Identities=17% Similarity=0.444 Sum_probs=17.7
Q ss_pred hhHHHHHHHHhhhhcccccCCCC
Q 014788 109 DVGSIRRVFDFLETWGLINYFAS 131 (418)
Q Consensus 109 Dv~~i~Rvh~FLe~wGlINy~~~ 131 (418)
-...+..++.|.-.||+|...+.
T Consensus 75 ~~~~l~~~~~~A~~~~~i~~NP~ 97 (116)
T 2kj5_A 75 TLRWLKRMFNYAIKRHIIEYNPA 97 (116)
T ss_dssp HHHHHHHHHHHHHHTTSCSSCGG
T ss_pred HHHHHHHHHHHHHHcCccccCch
Confidence 34668889999999999975433
No 126
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=23.75 E-value=36 Score=27.06 Aligned_cols=31 Identities=32% Similarity=0.703 Sum_probs=25.5
Q ss_pred cccccCCCCccccccccccCCCccchhhhhc
Q 014788 160 KRLCNGCKTLCTIACFACDKYDLTLCARCYV 190 (418)
Q Consensus 160 k~~C~~C~~~c~~~~~~c~k~d~~LC~~Cf~ 190 (418)
.+.|+.|+.......|.|...++.+-..|-.
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~ 77 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCDECDFDLHAKCAL 77 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTTCCCCCHHHHH
T ss_pred CeEeCCCCCcCCCcEEEcCCCCCeEcHHhcC
Confidence 4689999988776778888888888888875
No 127
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=22.75 E-value=1.2e+02 Score=22.69 Aligned_cols=46 Identities=24% Similarity=0.371 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhcccccCC
Q 014788 82 RDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (418)
Q Consensus 82 RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 129 (418)
|-.|+..-..+ ..+|+++..+.+.-+-..+.|...-|+..|+|...
T Consensus 18 ~~~iL~~L~~~--~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~ 63 (100)
T 1ub9_A 18 RLGIMIFLLPR--RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTY 63 (100)
T ss_dssp HHHHHHHHHHH--SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 44566543333 36999999988888999999999999999999743
No 128
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=21.64 E-value=69 Score=26.45 Aligned_cols=42 Identities=21% Similarity=0.490 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCC--------CHHHHHHHhCCCCHHHHHHHHhc--CCCCCccc
Q 014788 222 LQLLEAIMHFGD--------DWRKVAQHVSGKSEKDCITHFIK--LPFGQEFI 264 (418)
Q Consensus 222 l~LLe~ie~yg~--------nW~~IA~~VgtkT~~eC~~hfl~--LPIeD~~l 264 (418)
..|...|...|| .|.+|++.+|-.+......+|.+ +|.|. |+
T Consensus 52 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~-~~ 103 (116)
T 2li6_A 52 FYLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER-HM 103 (116)
T ss_dssp THHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHHHH-HH
T ss_pred HHHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHHHH-HH
Confidence 467777888884 79999999997667788888877 57776 55
No 129
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=21.43 E-value=1.4e+02 Score=24.74 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhcccccCC
Q 014788 77 VYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYF 129 (418)
Q Consensus 77 ~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~ 129 (418)
+|-+|-+.|+.....+ ..+|+++.-+.+.-+-..+.|...=|+..|||...
T Consensus 37 ~~~~~~~~i~~~l~~~--~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~ 87 (155)
T 2h09_A 37 LIDDYVELISDLIREV--GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMI 87 (155)
T ss_dssp HHHHHHHHHHHHHHHH--SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHhC--CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4555555565554443 35799999888888999999999999999999754
No 130
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=21.40 E-value=56 Score=26.50 Aligned_cols=35 Identities=23% Similarity=0.632 Sum_probs=23.2
Q ss_pred cccccccccCCCCcccc-----ccccccCCCccchhhhhc
Q 014788 156 KETSKRLCNGCKTLCTI-----ACFACDKYDLTLCARCYV 190 (418)
Q Consensus 156 ~~~~k~~C~~C~~~c~~-----~~~~c~k~d~~LC~~Cf~ 190 (418)
....-..|..|+.+.+. ....|....+.+|..||.
T Consensus 12 ~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyE 51 (93)
T 1weo_A 12 KNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYE 51 (93)
T ss_dssp SCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHH
T ss_pred cccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHH
Confidence 33344689999988642 233455556889999985
No 131
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=21.38 E-value=95 Score=24.65 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=34.4
Q ss_pred HHHHHHhCCCcceeHHHHHHhccc----hhHHHHHHHHhhhhcccccCCC
Q 014788 85 IVKHYRENPSRKITFTDVRRTLVG----DVGSIRRVFDFLETWGLINYFA 130 (418)
Q Consensus 85 ii~~yr~np~~yLT~t~~r~~l~g----Dv~~i~Rvh~FLe~wGlINy~~ 130 (418)
|.-.|... .+|..+..+.+.. +-..+.++.+=|+..|+|--..
T Consensus 16 L~~L~~~~---~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~ 62 (126)
T 1sd4_A 16 MNIIWDKK---SVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK 62 (126)
T ss_dssp HHHHHHSS---SEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHhcC---CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence 44557643 5899999888864 6899999999999999997654
No 132
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=20.48 E-value=1.9e+02 Score=22.50 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhcccccCCCCccc
Q 014788 74 NPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFASVKT 134 (418)
Q Consensus 74 tp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~~kP 134 (418)
.-++|-.++++|. .+.+.+..|..+.-|.|.-.-..|-|+.-=|++-|.+--....+|
T Consensus 10 ~~~~~~~v~~~i~---~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~~PP 67 (75)
T 1sfu_A 10 DAEIFSLVKKEVL---SLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPSNPP 67 (75)
T ss_dssp SHHHHHHHHHHHH---TSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSSC
T ss_pred hHHHHHHHHHHHH---hCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCCCCC
Confidence 3589999999998 677788899999999998888889999999999999976655444
No 133
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=20.44 E-value=1.3e+02 Score=24.91 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhccccc-CCCC
Q 014788 81 YRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLIN-YFAS 131 (418)
Q Consensus 81 ~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlIN-y~~~ 131 (418)
.|-.|+..-+.++ .+|+++.-+.+.-....+.|...=|+..|+|. |...
T Consensus 4 ~~~~il~~L~~~~--~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~ 53 (150)
T 2pn6_A 4 IDLRILKILQYNA--KYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAY 53 (150)
T ss_dssp HHHHHHHHHTTCT--TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCC
T ss_pred HHHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEee
Confidence 4667888777665 69999998888889999999999999999997 6554
No 134
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=20.43 E-value=1.3e+02 Score=23.94 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=31.8
Q ss_pred ceeHHHHHHhccchhHHHHHHHHhhhhcccccCCCC
Q 014788 96 KITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (418)
Q Consensus 96 yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 131 (418)
.+|+++..+.+.-+...+.|+..-|+..|+|-...+
T Consensus 50 ~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~ 85 (142)
T 2fbi_A 50 EMESYQLANQACILRPSMTGVLARLERDGIVRRWKA 85 (142)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecC
Confidence 499999998888899999999999999999976543
No 135
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=20.37 E-value=81 Score=28.01 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=47.5
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCcceeHHHHHHhccchhHHHHHHHHhhhhcccccCCC
Q 014788 72 SKNPRVYRYYRDSIVKHYRENPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFA 130 (418)
Q Consensus 72 ~ktp~~Y~~~RN~ii~~yr~np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~ 130 (418)
+....+|-.+|+.|++- +.-|...|+-.+--..+.---..|.....-|+.-|||-...
T Consensus 12 ~l~~~v~~~l~~~I~~g-~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~ 69 (218)
T 3sxy_A 12 LVRTKVYNLLKEMILNH-ELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVP 69 (218)
T ss_dssp --CHHHHHHHHHHHHTT-SSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEET
T ss_pred cHHHHHHHHHHHHHHhC-CCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 34568999999999984 45599999988888888877888888888899999997653
No 136
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=20.10 E-value=1.8e+02 Score=23.31 Aligned_cols=40 Identities=10% Similarity=0.096 Sum_probs=35.2
Q ss_pred CCCcceeHHHHHHhccchhHHHHHHHHhhhhcccccCCCC
Q 014788 92 NPSRKITFTDVRRTLVGDVGSIRRVFDFLETWGLINYFAS 131 (418)
Q Consensus 92 np~~yLT~t~~r~~l~gDv~~i~Rvh~FLe~wGlINy~~~ 131 (418)
++...+|.++..+.+.-+-..+.|+..=|+..|||....+
T Consensus 49 ~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~ 88 (127)
T 2frh_A 49 NKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRN 88 (127)
T ss_dssp TCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCC
T ss_pred ccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCC
Confidence 4456799999998898899999999999999999988665
Done!