BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014789
(418 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QBY|A Chain A, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 386
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 37/213 (17%)
Query: 22 PNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVXXXXXXXXXXEY 81
P+++ L D K+ +++ E N+I + G G+GK AV
Sbjct: 15 PDYIPDELPHRED-QIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK----- 68
Query: 82 PDTISVIKLNGLLHSDDCCAFKEI---ARQLCMEHQLLFSKMASFDDNSQF--------- 129
LH FK + RQ+ +++L + S D F
Sbjct: 69 ------------LHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELY 116
Query: 130 --MIEMLRECGLAHKTIIFVLDEFDLFAQG-KQRLLYSLLDAMQSVT-SQAVVIGVSCRL 185
+++ +R+ G ++ VLDE D F + +LY L V S+ IG++ +
Sbjct: 117 RRLVKAVRDYG---SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173
Query: 186 DADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLL 218
LL+ RV+S S +++F P + E+++ +L
Sbjct: 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDIL 206
>pdb|2V1U|A Chain A, Structure Of The Aeropyrum Pernix Orc1 Protein In Complex
With Dna
Length = 387
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 145 IFVLDEFDLFAQ--GKQRLLYSLLDAMQSVTSQAVV--IGVSCRLDADQLLEKRVRSRFS 200
I VLDE D + G Q LLY + Q + + V +G++ L + LE RV+S
Sbjct: 133 IIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLG 192
Query: 201 HRKLLFLPPSKEDMQRLLE 219
+L+F P + ++ +LE
Sbjct: 193 EVELVFPPYTAPQLRDILE 211
>pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2AN9|B Chain B, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gdp
pdb|2ANB|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In
Complex With Gmp
pdb|2ANC|A Chain A, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|B Chain B, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|C Chain C, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|D Chain D, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|E Chain E, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2ANC|F Chain F, Crystal Structure Of Unliganded Form Of Oligomeric E.Coli
Guanylate Kinase
pdb|2F3R|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3R|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ap5g
pdb|2F3T|A Chain A, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|B Chain B, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|C Chain C, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|D Chain D, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|E Chain E, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
pdb|2F3T|F Chain F, Crystal Structure Of E.Coli Guanylate Kinase In Complex
With Ganciclovir Monophosphate
Length = 207
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 175 QAVVIGVSCRLDADQLLEKRVRSRFSH-RKLLFLPPSKEDMQRLL 218
Q + GV LD D +++R + H R + LPPSK ++ R L
Sbjct: 91 QVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRL 135
>pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
pdb|1S96|B Chain B, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli
Length = 219
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 175 QAVVIGVSCRLDADQLLEKRVRSRFSH-RKLLFLPPSKEDMQRLL 218
Q + GV LD D +++R + H R + LPPSK ++ R L
Sbjct: 103 QVLATGVDVFLDIDWQGAQQIRQKXPHARSIFILPPSKIELDRRL 147
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 35 SNYSKLKFLVSSSVTEACNNSILLLGPRGSGK 66
++Y +L+ +S+ E ++ILL+GP GSGK
Sbjct: 33 NHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 64
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 35 SNYSKLKFLVSSSVTEACNNSILLLGPRGSGK 66
++Y +L+ +S+ E ++ILL+GP GSGK
Sbjct: 33 NHYKRLRNGDTSNGVELGKSNILLIGPTGSGK 64
>pdb|2HEK|A Chain A, Crystal Structure Of O67745, A Hypothetical Protein From
Aquifex Aeolicus At 2.0 A Resolution.
pdb|2HEK|B Chain B, Crystal Structure Of O67745, A Hypothetical Protein From
Aquifex Aeolicus At 2.0 A Resolution
Length = 371
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 14/165 (8%)
Query: 210 SKEDMQRLLEHILSLPVDSS---LPHAYAVEFNK-KIKNILADGRFKEIVNTLVNLDSTV 265
S ED++RL+ L P D L EF ++ + D F + + D +
Sbjct: 127 SHEDIERLVRITLGKPEDEEEKLLSEIITGEFGSDRMDYLRRDAYFCGVSYGFFDYDRLI 186
Query: 266 NHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCLKRLE 325
+ L + V +D ESG + ENF +S ++ K IL ++++ LK+L
Sbjct: 187 STLRVYENKVV--VD-ESGLRALENF--LISRYFMYVQVYFHKVVRILSIHLVEFLKKL- 240
Query: 326 VKEQNSYNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFEHLLQRE 370
+ +++ + N+ ++ ++D+F S+ + R FE + QR+
Sbjct: 241 ISQEDFTDINNFLR----LNDAFVISELFKRKAFREDFERIFQRK 281
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,865,036
Number of Sequences: 62578
Number of extensions: 405338
Number of successful extensions: 972
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 969
Number of HSP's gapped (non-prelim): 9
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)