Query 014789
Match_columns 418
No_of_seqs 279 out of 2943
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 08:32:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1474 CDC6 Cdc6-related prot 100.0 2.5E-48 5.4E-53 366.0 33.0 360 14-406 4-364 (366)
2 PTZ00112 origin recognition co 100.0 2.3E-48 4.9E-53 383.8 32.1 373 16-415 744-1164(1164)
3 KOG2228 Origin recognition com 100.0 1.2E-46 2.5E-51 333.5 31.7 399 1-417 1-405 (408)
4 PRK00411 cdc6 cell division co 100.0 8.3E-46 1.8E-50 360.4 34.5 371 13-407 16-389 (394)
5 TIGR02928 orc1/cdc6 family rep 100.0 2.2E-44 4.7E-49 347.0 33.0 356 14-390 2-364 (365)
6 KOG2227 Pre-initiation complex 100.0 4.2E-44 9.1E-49 330.3 28.2 365 12-406 135-518 (529)
7 KOG1514 Origin recognition com 100.0 2E-42 4.3E-47 333.0 29.3 352 25-407 394-762 (767)
8 PF14629 ORC4_C: Origin recogn 99.9 7.5E-21 1.6E-25 167.2 21.2 189 216-405 2-203 (203)
9 TIGR00635 ruvB Holliday juncti 99.9 2.3E-20 5E-25 175.3 22.2 265 29-373 5-287 (305)
10 COG1222 RPT1 ATP-dependent 26S 99.8 7.3E-20 1.6E-24 165.1 17.0 215 29-300 152-394 (406)
11 PRK00080 ruvB Holliday junctio 99.8 2.6E-19 5.6E-24 169.4 21.7 266 28-373 25-308 (328)
12 COG2255 RuvB Holliday junction 99.8 6.5E-19 1.4E-23 154.2 21.1 236 19-323 19-271 (332)
13 COG2256 MGS1 ATPase related to 99.8 1.8E-19 3.9E-24 165.1 16.7 213 29-297 25-237 (436)
14 PRK14956 DNA polymerase III su 99.8 1.1E-18 2.3E-23 167.8 21.7 273 29-345 19-296 (484)
15 PRK07003 DNA polymerase III su 99.8 8.2E-18 1.8E-22 167.6 22.0 238 28-309 16-255 (830)
16 PRK14962 DNA polymerase III su 99.8 4.4E-17 9.5E-22 159.3 25.8 221 29-310 15-254 (472)
17 PF05496 RuvB_N: Holliday junc 99.8 7.5E-19 1.6E-23 151.1 11.7 199 18-280 16-230 (233)
18 PRK14949 DNA polymerase III su 99.8 1.9E-17 4.1E-22 168.1 22.5 227 28-299 16-245 (944)
19 PRK12323 DNA polymerase III su 99.8 2E-17 4.3E-22 162.9 20.7 243 29-311 17-262 (700)
20 PRK14960 DNA polymerase III su 99.8 4.6E-17 9.9E-22 160.7 22.7 225 28-312 15-257 (702)
21 PRK14958 DNA polymerase III su 99.8 3.1E-17 6.8E-22 162.0 21.6 242 28-312 16-258 (509)
22 PRK06645 DNA polymerase III su 99.8 3.9E-17 8.4E-22 160.2 21.9 248 29-312 22-270 (507)
23 PRK14961 DNA polymerase III su 99.8 7.1E-17 1.5E-21 154.4 23.2 241 28-312 16-258 (363)
24 PRK03992 proteasome-activating 99.8 3.1E-17 6.6E-22 158.0 19.6 224 23-302 127-376 (389)
25 PRK07994 DNA polymerase III su 99.8 3.7E-17 8.1E-22 163.5 20.8 232 28-307 16-253 (647)
26 PRK14959 DNA polymerase III su 99.8 6.8E-17 1.5E-21 160.2 22.5 275 29-347 17-295 (624)
27 PRK14964 DNA polymerase III su 99.8 1.2E-16 2.6E-21 155.5 22.9 220 28-308 13-251 (491)
28 COG1223 Predicted ATPase (AAA+ 99.8 1.1E-16 2.4E-21 138.3 19.8 214 28-297 121-354 (368)
29 KOG2028 ATPase related to the 99.8 6.7E-18 1.4E-22 152.2 12.8 218 30-297 140-367 (554)
30 KOG0730 AAA+-type ATPase [Post 99.8 4.2E-17 9.1E-22 157.9 18.5 220 28-302 434-678 (693)
31 PRK14952 DNA polymerase III su 99.8 2.1E-16 4.4E-21 157.5 23.3 221 28-308 13-254 (584)
32 PRK08691 DNA polymerase III su 99.7 1.5E-16 3.2E-21 158.6 19.6 241 29-312 17-258 (709)
33 PLN03025 replication factor C 99.7 4.2E-16 9.1E-21 146.8 21.8 221 29-309 14-234 (319)
34 PRK05563 DNA polymerase III su 99.7 6E-16 1.3E-20 155.0 23.5 244 19-307 9-253 (559)
35 PRK14951 DNA polymerase III su 99.7 4.3E-16 9.3E-21 155.7 22.0 245 28-312 16-263 (618)
36 PRK07764 DNA polymerase III su 99.7 5.2E-16 1.1E-20 160.3 23.2 238 29-308 16-256 (824)
37 PRK14957 DNA polymerase III su 99.7 6.3E-16 1.4E-20 152.6 22.3 218 29-307 17-253 (546)
38 PTZ00361 26 proteosome regulat 99.7 2.4E-16 5.2E-21 151.9 18.6 216 29-299 184-425 (438)
39 PRK13342 recombination factor 99.7 1.3E-15 2.8E-20 148.4 23.9 207 28-297 12-218 (413)
40 TIGR02639 ClpA ATP-dependent C 99.7 5.3E-16 1.2E-20 161.1 21.2 230 29-300 183-431 (731)
41 TIGR02881 spore_V_K stage V sp 99.7 3.7E-16 7.9E-21 143.0 17.7 205 29-278 7-237 (261)
42 CHL00195 ycf46 Ycf46; Provisio 99.7 6.7E-16 1.5E-20 151.1 20.5 221 29-302 229-467 (489)
43 TIGR00362 DnaA chromosomal rep 99.7 1.1E-15 2.3E-20 149.0 21.6 232 18-298 101-337 (405)
44 PRK00149 dnaA chromosomal repl 99.7 1.4E-15 3.1E-20 149.9 22.7 232 18-298 113-349 (450)
45 PTZ00454 26S protease regulato 99.7 3.1E-16 6.6E-21 150.3 17.2 218 29-300 146-388 (398)
46 PRK12402 replication factor C 99.7 1.2E-15 2.7E-20 145.4 21.5 304 20-371 5-317 (337)
47 PRK14969 DNA polymerase III su 99.7 5E-16 1.1E-20 154.5 19.2 239 28-310 16-256 (527)
48 TIGR03015 pepcterm_ATPase puta 99.7 1.5E-15 3.2E-20 140.2 20.8 242 29-299 20-267 (269)
49 PRK08451 DNA polymerase III su 99.7 4.1E-15 8.9E-20 146.1 24.9 222 28-310 14-254 (535)
50 PRK08084 DNA replication initi 99.7 7.6E-16 1.6E-20 138.3 18.2 215 20-295 15-233 (235)
51 PRK00440 rfc replication facto 99.7 2.6E-15 5.7E-20 142.1 22.2 226 18-305 5-233 (319)
52 PRK07133 DNA polymerase III su 99.7 2.6E-15 5.6E-20 151.2 23.1 224 29-301 19-246 (725)
53 TIGR01242 26Sp45 26S proteasom 99.7 5.1E-16 1.1E-20 149.0 17.2 217 28-298 122-363 (364)
54 TIGR02397 dnaX_nterm DNA polym 99.7 3E-15 6.5E-20 143.8 22.4 213 29-301 15-245 (355)
55 PRK05896 DNA polymerase III su 99.7 1.4E-15 3E-20 150.3 20.2 239 29-310 17-256 (605)
56 PRK14965 DNA polymerase III su 99.7 2.1E-15 4.5E-20 151.9 21.4 230 28-301 16-247 (576)
57 KOG0989 Replication factor C, 99.7 6.7E-16 1.4E-20 136.8 15.6 216 20-290 26-245 (346)
58 PRK09111 DNA polymerase III su 99.7 2.1E-15 4.4E-20 151.2 20.9 239 28-306 24-265 (598)
59 PRK13341 recombination factor 99.7 2.8E-15 6.1E-20 153.1 22.1 215 29-297 29-246 (725)
60 TIGR03689 pup_AAA proteasome A 99.7 1E-15 2.2E-20 149.6 17.9 174 28-223 182-379 (512)
61 PRK14953 DNA polymerase III su 99.7 5.9E-15 1.3E-19 145.1 23.1 233 29-308 17-254 (486)
62 COG2812 DnaX DNA polymerase II 99.7 1.1E-15 2.4E-20 148.3 17.5 255 29-328 17-275 (515)
63 PRK06893 DNA replication initi 99.7 1.4E-15 2.9E-20 136.2 16.9 191 49-296 35-228 (229)
64 PRK08727 hypothetical protein; 99.7 2E-15 4.4E-20 135.4 17.7 213 22-297 14-230 (233)
65 PRK14088 dnaA chromosomal repl 99.7 5.8E-15 1.3E-19 144.1 21.9 231 19-297 97-331 (440)
66 PRK14963 DNA polymerase III su 99.7 5.2E-15 1.1E-19 145.9 21.8 216 29-306 15-248 (504)
67 PRK06305 DNA polymerase III su 99.7 1.2E-14 2.7E-19 142.0 23.5 222 28-310 17-258 (451)
68 PRK14087 dnaA chromosomal repl 99.7 4.8E-15 1E-19 144.8 20.6 292 23-377 111-410 (450)
69 PF00308 Bac_DnaA: Bacterial d 99.7 4.1E-15 8.9E-20 131.8 18.4 208 20-276 1-213 (219)
70 CHL00176 ftsH cell division pr 99.7 1.6E-15 3.5E-20 153.0 17.6 216 28-298 183-423 (638)
71 CHL00181 cbbX CbbX; Provisiona 99.7 4.9E-15 1.1E-19 136.4 18.7 167 29-223 24-210 (287)
72 PRK14955 DNA polymerase III su 99.7 9.4E-15 2E-19 141.4 21.2 238 28-303 16-262 (397)
73 KOG0734 AAA+-type ATPase conta 99.7 2.1E-15 4.5E-20 142.4 15.2 168 29-230 305-493 (752)
74 PRK06647 DNA polymerase III su 99.7 2.2E-14 4.9E-19 143.2 23.3 227 29-299 17-245 (563)
75 PRK04195 replication factor C 99.7 4.5E-15 9.8E-20 147.4 18.2 206 29-295 15-222 (482)
76 TIGR01241 FtsH_fam ATP-depende 99.7 2E-15 4.4E-20 150.5 15.5 216 29-299 56-296 (495)
77 PRK12422 chromosomal replicati 99.6 1.7E-14 3.7E-19 140.5 21.1 289 19-375 103-404 (445)
78 PRK14954 DNA polymerase III su 99.6 6E-14 1.3E-18 140.9 23.9 235 28-300 16-259 (620)
79 PRK05642 DNA replication initi 99.6 9.2E-15 2E-19 131.2 16.1 216 20-296 12-233 (234)
80 TIGR02880 cbbX_cfxQ probable R 99.6 2E-14 4.4E-19 132.5 18.8 205 29-278 23-252 (284)
81 TIGR00602 rad24 checkpoint pro 99.6 7.7E-15 1.7E-19 147.0 16.6 246 28-298 84-355 (637)
82 TIGR03420 DnaA_homol_Hda DnaA 99.6 9.6E-15 2.1E-19 131.1 15.6 198 35-295 24-225 (226)
83 KOG0991 Replication factor C, 99.6 1.6E-14 3.5E-19 123.0 15.6 256 29-350 28-287 (333)
84 CHL00095 clpC Clp protease ATP 99.6 2.3E-14 5E-19 150.6 20.5 185 6-222 160-354 (821)
85 PRK14970 DNA polymerase III su 99.6 4.6E-14 1E-18 135.9 20.7 210 29-298 18-233 (367)
86 PRK11034 clpA ATP-dependent Cl 99.6 3.2E-14 7E-19 146.1 20.0 234 29-300 187-435 (758)
87 PRK14086 dnaA chromosomal repl 99.6 6.2E-14 1.3E-18 138.7 21.1 230 19-298 280-515 (617)
88 KOG0733 Nuclear AAA ATPase (VC 99.6 2E-14 4.4E-19 137.8 16.7 161 29-223 512-693 (802)
89 TIGR01243 CDC48 AAA family ATP 99.6 4.1E-14 8.9E-19 147.5 20.6 161 29-223 454-636 (733)
90 PRK14950 DNA polymerase III su 99.6 3.7E-14 8.1E-19 143.5 19.5 231 28-300 16-247 (585)
91 KOG0738 AAA+-type ATPase [Post 99.6 1.5E-13 3.2E-18 125.5 20.6 179 12-223 195-396 (491)
92 PRK08903 DnaA regulatory inact 99.6 2.9E-14 6.4E-19 127.9 15.9 184 51-296 40-224 (227)
93 TIGR03345 VI_ClpV1 type VI sec 99.6 3E-14 6.6E-19 149.1 18.1 242 7-293 169-426 (852)
94 COG0593 DnaA ATPase involved i 99.6 3E-13 6.4E-18 127.8 22.5 291 19-377 79-374 (408)
95 KOG0736 Peroxisome assembly fa 99.6 4.5E-14 9.8E-19 138.8 17.2 158 29-220 673-855 (953)
96 KOG0733 Nuclear AAA ATPase (VC 99.6 1.1E-14 2.5E-19 139.5 12.5 161 28-223 190-375 (802)
97 PRK14948 DNA polymerase III su 99.6 2.4E-13 5.2E-18 137.3 21.5 225 29-295 17-242 (620)
98 PF05621 TniB: Bacterial TniB 99.6 3.3E-13 7.2E-18 121.8 19.4 227 34-293 43-284 (302)
99 KOG0728 26S proteasome regulat 99.6 8.3E-14 1.8E-18 120.0 14.6 215 30-298 149-388 (404)
100 PF05673 DUF815: Protein of un 99.6 2.1E-13 4.6E-18 119.2 17.4 167 21-223 20-208 (249)
101 PRK14971 DNA polymerase III su 99.6 4.9E-13 1.1E-17 135.1 22.5 215 19-296 10-244 (614)
102 PF00004 AAA: ATPase family as 99.6 1.2E-14 2.5E-19 118.9 8.6 119 56-207 1-131 (132)
103 PHA02544 44 clamp loader, smal 99.6 5.4E-13 1.2E-17 126.0 20.6 203 29-293 22-226 (316)
104 PRK07940 DNA polymerase III su 99.5 4.5E-13 9.7E-18 128.3 19.0 177 28-222 5-189 (394)
105 PRK06620 hypothetical protein; 99.5 2.4E-13 5.1E-18 120.0 15.4 200 20-295 9-213 (214)
106 PRK09112 DNA polymerase III su 99.5 1.2E-12 2.6E-17 123.6 21.2 207 29-274 24-243 (351)
107 TIGR03346 chaperone_ClpB ATP-d 99.5 2.3E-13 4.9E-18 143.6 17.4 209 29-279 174-396 (852)
108 COG0466 Lon ATP-dependent Lon 99.5 2.3E-13 5E-18 133.6 15.3 248 2-296 308-582 (782)
109 COG0464 SpoVK ATPases of the A 99.5 5.7E-13 1.2E-17 133.4 18.3 221 29-301 243-486 (494)
110 KOG0727 26S proteasome regulat 99.5 1.3E-13 2.9E-18 118.8 11.7 213 30-299 157-397 (408)
111 TIGR00678 holB DNA polymerase 99.5 4.3E-13 9.3E-18 116.7 15.2 160 44-221 4-167 (188)
112 PRK09087 hypothetical protein; 99.5 4.5E-13 9.7E-18 119.2 15.0 207 21-298 15-222 (226)
113 TIGR02902 spore_lonB ATP-depen 99.5 2.1E-13 4.4E-18 136.3 13.8 234 29-296 66-330 (531)
114 PF13191 AAA_16: AAA ATPase do 99.5 1E-13 2.2E-18 120.3 9.3 144 30-179 2-185 (185)
115 PLN00020 ribulose bisphosphate 99.5 4E-13 8.7E-18 123.8 13.5 142 50-223 145-312 (413)
116 KOG0652 26S proteasome regulat 99.5 5.7E-13 1.2E-17 115.5 13.3 214 29-299 172-413 (424)
117 KOG0737 AAA+-type ATPase [Post 99.5 1.6E-12 3.5E-17 118.6 16.4 161 29-223 93-275 (386)
118 TIGR00763 lon ATP-dependent pr 99.5 2.2E-12 4.7E-17 135.0 19.3 168 28-222 320-505 (775)
119 PF01637 Arch_ATPase: Archaeal 99.5 3.8E-13 8.2E-18 121.2 11.9 181 30-223 1-205 (234)
120 KOG0726 26S proteasome regulat 99.5 1.9E-13 4.2E-18 120.2 9.5 213 29-299 186-427 (440)
121 KOG2543 Origin recognition com 99.5 9.1E-12 2E-16 113.9 20.3 184 28-221 6-192 (438)
122 TIGR01243 CDC48 AAA family ATP 99.5 5E-12 1.1E-16 132.0 21.4 162 28-223 178-360 (733)
123 PRK10733 hflB ATP-dependent me 99.5 3.9E-12 8.4E-17 130.1 19.1 215 30-299 154-393 (644)
124 CHL00206 ycf2 Ycf2; Provisiona 99.5 9.5E-13 2.1E-17 141.3 14.8 215 51-299 1628-1878(2281)
125 PRK10787 DNA-binding ATP-depen 99.4 5.3E-12 1.1E-16 131.0 19.5 168 28-223 322-507 (784)
126 PRK07471 DNA polymerase III su 99.4 4.5E-12 9.8E-17 120.4 17.4 182 29-222 20-213 (365)
127 PRK10865 protein disaggregatio 99.4 4.1E-12 8.8E-17 133.7 18.6 185 7-222 160-354 (857)
128 KOG0731 AAA+-type ATPase conta 99.4 2E-12 4.4E-17 129.5 14.7 161 28-223 311-496 (774)
129 PRK04132 replication factor C 99.4 1.3E-11 2.8E-16 127.1 21.0 197 55-308 566-764 (846)
130 TIGR02903 spore_lon_C ATP-depe 99.4 1.7E-11 3.6E-16 124.6 21.5 228 29-298 155-430 (615)
131 KOG2004 Mitochondrial ATP-depe 99.4 2.7E-12 5.9E-17 125.5 14.6 198 30-263 413-630 (906)
132 KOG0739 AAA+-type ATPase [Post 99.4 2.2E-12 4.8E-17 114.0 12.1 206 7-263 111-336 (439)
133 TIGR02640 gas_vesic_GvpN gas v 99.4 2.1E-11 4.5E-16 111.5 19.1 228 35-298 5-257 (262)
134 KOG0735 AAA+-type ATPase [Post 99.4 4.6E-12 9.9E-17 123.8 15.1 160 29-222 668-848 (952)
135 PF13401 AAA_22: AAA domain; P 99.4 4.1E-12 8.8E-17 103.7 12.4 121 52-184 3-125 (131)
136 PRK05707 DNA polymerase III su 99.4 2.2E-11 4.7E-16 114.2 18.4 155 51-222 20-178 (328)
137 PRK13531 regulatory ATPase Rav 99.4 1.9E-11 4.1E-16 117.8 18.3 238 28-296 20-281 (498)
138 TIGR02639 ClpA ATP-dependent C 99.4 1.1E-11 2.5E-16 129.0 17.5 217 28-274 454-706 (731)
139 KOG0730 AAA+-type ATPase [Post 99.4 1E-11 2.2E-16 121.0 15.7 313 29-407 185-525 (693)
140 PRK11034 clpA ATP-dependent Cl 99.4 7E-12 1.5E-16 129.1 15.1 175 28-223 458-667 (758)
141 KOG0740 AAA+-type ATPase [Post 99.4 1.2E-11 2.6E-16 116.9 15.4 237 29-305 154-411 (428)
142 KOG0744 AAA+-type ATPase [Post 99.4 6.2E-11 1.3E-15 106.1 18.5 148 53-223 177-341 (423)
143 TIGR03345 VI_ClpV1 type VI sec 99.4 9E-12 2E-16 130.7 15.0 220 28-275 566-826 (852)
144 TIGR03346 chaperone_ClpB ATP-d 99.4 2.3E-11 5.1E-16 128.5 18.1 222 28-276 565-822 (852)
145 cd00009 AAA The AAA+ (ATPases 99.4 1.1E-11 2.4E-16 102.8 12.7 148 31-208 1-151 (151)
146 COG0465 HflB ATP-dependent Zn 99.3 1E-11 2.2E-16 122.3 13.4 215 28-299 150-391 (596)
147 PRK07399 DNA polymerase III su 99.3 1.2E-10 2.6E-15 108.6 19.3 180 28-222 4-195 (314)
148 KOG0741 AAA+-type ATPase [Post 99.3 2.4E-11 5.1E-16 115.2 14.3 177 15-223 207-418 (744)
149 PRK08058 DNA polymerase III su 99.3 5.6E-11 1.2E-15 112.2 16.8 172 29-221 6-181 (329)
150 PRK05564 DNA polymerase III su 99.3 7.7E-11 1.7E-15 110.9 17.6 155 29-222 5-165 (313)
151 KOG0729 26S proteasome regulat 99.3 2E-11 4.3E-16 106.4 12.2 213 29-298 178-418 (435)
152 COG0542 clpA ATP-binding subun 99.3 2.3E-11 4.9E-16 123.0 14.5 210 29-280 171-394 (786)
153 KOG0742 AAA+-type ATPase [Post 99.3 8.4E-11 1.8E-15 108.3 16.6 135 53-223 384-529 (630)
154 COG0542 clpA ATP-binding subun 99.3 2.7E-11 5.8E-16 122.4 14.2 221 28-275 491-750 (786)
155 PRK13407 bchI magnesium chelat 99.3 5.3E-11 1.1E-15 111.3 15.1 260 28-298 8-306 (334)
156 COG1224 TIP49 DNA helicase TIP 99.3 2.2E-10 4.7E-15 104.0 18.2 139 133-297 282-431 (450)
157 CHL00095 clpC Clp protease ATP 99.3 1.1E-10 2.4E-15 123.1 19.0 220 28-274 509-776 (821)
158 PF00931 NB-ARC: NB-ARC domain 99.3 7.2E-11 1.6E-15 110.0 15.7 169 33-223 1-171 (287)
159 PRK05342 clpX ATP-dependent pr 99.3 7.1E-11 1.5E-15 113.7 15.6 61 28-94 71-143 (412)
160 PRK07993 DNA polymerase III su 99.3 1.1E-10 2.4E-15 109.8 16.0 158 47-221 17-179 (334)
161 PRK10865 protein disaggregatio 99.3 8.6E-11 1.9E-15 123.8 17.0 220 28-274 568-823 (857)
162 PRK06871 DNA polymerase III su 99.3 2E-10 4.2E-15 107.0 17.3 162 44-222 14-179 (325)
163 PF13177 DNA_pol3_delta2: DNA 99.3 5.3E-11 1.1E-15 100.5 12.2 152 41-210 6-162 (162)
164 COG3267 ExeA Type II secretory 99.3 1.1E-09 2.5E-14 95.5 20.0 235 30-292 29-267 (269)
165 TIGR02974 phageshock_pspF psp 99.2 9.6E-11 2.1E-15 110.3 13.7 214 30-279 1-233 (329)
166 COG2607 Predicted ATPase (AAA+ 99.2 7.4E-10 1.6E-14 95.4 16.8 159 29-223 61-240 (287)
167 TIGR00382 clpX endopeptidase C 99.2 2.5E-10 5.4E-15 109.4 15.6 215 28-276 77-381 (413)
168 KOG0990 Replication factor C, 99.2 4.2E-11 9.2E-16 107.2 9.5 192 30-276 43-237 (360)
169 PRK11608 pspF phage shock prot 99.2 2.2E-10 4.7E-15 108.0 14.4 216 28-279 6-240 (326)
170 PRK08769 DNA polymerase III su 99.2 9.4E-10 2E-14 102.3 18.3 160 42-221 14-184 (319)
171 CHL00081 chlI Mg-protoporyphyr 99.2 4.1E-10 8.8E-15 105.6 15.8 262 28-299 17-323 (350)
172 KOG2035 Replication factor C, 99.2 1.9E-09 4.1E-14 94.8 18.1 194 29-275 14-232 (351)
173 PF14516 AAA_35: AAA-like doma 99.2 2.2E-08 4.7E-13 94.7 26.9 180 29-221 12-213 (331)
174 TIGR02030 BchI-ChlI magnesium 99.2 4.1E-10 8.8E-15 105.6 15.0 154 143-299 132-310 (337)
175 COG0470 HolB ATPase involved i 99.2 4.2E-10 9.1E-15 106.7 15.2 145 30-210 3-169 (325)
176 PRK10820 DNA-binding transcrip 99.2 1.3E-09 2.7E-14 109.3 18.5 231 22-291 199-447 (520)
177 PRK06964 DNA polymerase III su 99.2 2.2E-10 4.9E-15 107.3 12.3 157 49-221 17-203 (342)
178 TIGR01817 nifA Nif-specific re 99.2 3.4E-10 7.4E-15 114.3 14.6 227 28-292 196-439 (534)
179 PRK05022 anaerobic nitric oxid 99.2 8.7E-10 1.9E-14 110.4 16.6 229 28-292 187-437 (509)
180 KOG0743 AAA+-type ATPase [Post 99.2 1.3E-09 2.7E-14 102.7 16.3 153 33-227 206-388 (457)
181 PRK06090 DNA polymerase III su 99.2 7E-10 1.5E-14 103.0 14.2 161 43-221 14-179 (319)
182 TIGR02329 propionate_PrpR prop 99.2 1.4E-09 3.1E-14 108.0 17.3 237 23-294 208-466 (526)
183 KOG0735 AAA+-type ATPase [Post 99.1 2.1E-09 4.7E-14 105.5 16.7 142 52-223 430-587 (952)
184 PRK05201 hslU ATP-dependent pr 99.1 2.4E-09 5.3E-14 101.3 16.6 145 142-296 249-430 (443)
185 COG1221 PspF Transcriptional r 99.1 1.1E-09 2.5E-14 103.3 14.4 218 28-280 78-310 (403)
186 TIGR00390 hslU ATP-dependent p 99.1 3.5E-09 7.6E-14 100.2 17.5 147 142-298 247-430 (441)
187 KOG0651 26S proteasome regulat 99.1 2.2E-10 4.8E-15 102.1 8.2 150 28-211 132-305 (388)
188 PRK15429 formate hydrogenlyase 99.1 2.5E-09 5.5E-14 111.1 17.4 216 28-279 376-609 (686)
189 PF06068 TIP49: TIP49 C-termin 99.1 3.3E-09 7.1E-14 98.0 15.0 110 141-275 277-395 (398)
190 PRK08116 hypothetical protein; 99.1 2.3E-09 4.9E-14 98.0 13.7 156 37-221 97-259 (268)
191 TIGR01650 PD_CobS cobaltochela 99.1 1.5E-09 3.2E-14 100.2 12.4 150 53-222 64-233 (327)
192 PF03215 Rad17: Rad17 cell cyc 99.1 2.8E-09 6E-14 105.5 14.9 219 29-277 20-269 (519)
193 PF07728 AAA_5: AAA domain (dy 99.1 1.2E-10 2.6E-15 96.1 4.5 122 55-199 1-139 (139)
194 TIGR00764 lon_rel lon-related 99.1 3.2E-09 7E-14 107.7 15.7 138 143-296 218-389 (608)
195 TIGR00368 Mg chelatase-related 99.1 4.9E-09 1.1E-13 103.5 16.4 148 142-296 295-497 (499)
196 PF05729 NACHT: NACHT domain 99.1 8.2E-09 1.8E-13 87.6 15.6 153 55-223 2-164 (166)
197 PRK08699 DNA polymerase III su 99.1 3.4E-09 7.4E-14 99.3 14.3 168 33-221 6-184 (325)
198 COG2204 AtoC Response regulato 99.0 1.5E-09 3.3E-14 104.4 11.7 227 28-292 141-385 (464)
199 PRK15424 propionate catabolism 99.0 5.6E-09 1.2E-13 103.8 15.9 235 28-292 219-479 (538)
200 PRK12377 putative replication 99.0 3E-09 6.4E-14 95.6 12.6 142 36-208 86-234 (248)
201 PRK11388 DNA-binding transcrip 99.0 3.2E-09 7E-14 109.7 14.4 227 28-295 325-568 (638)
202 smart00350 MCM minichromosome 99.0 3.3E-09 7E-14 106.1 13.6 243 29-298 204-504 (509)
203 PRK11331 5-methylcytosine-spec 99.0 3.8E-09 8.1E-14 101.2 13.0 169 30-221 177-371 (459)
204 COG1239 ChlI Mg-chelatase subu 99.0 1.6E-08 3.4E-13 94.9 16.6 201 29-243 18-250 (423)
205 PRK06835 DNA replication prote 99.0 8.1E-09 1.7E-13 96.7 14.3 128 53-208 183-316 (329)
206 KOG1969 DNA replication checkp 99.0 1.9E-08 4.1E-13 99.4 17.0 136 52-219 325-478 (877)
207 COG0714 MoxR-like ATPases [Gen 99.0 1.6E-08 3.4E-13 95.9 16.2 166 29-223 25-203 (329)
208 PF14532 Sigma54_activ_2: Sigm 99.0 9.4E-10 2E-14 90.5 6.8 134 31-209 1-138 (138)
209 TIGR02031 BchD-ChlD magnesium 99.0 3.4E-09 7.3E-14 107.3 11.9 229 47-299 10-259 (589)
210 PF07693 KAP_NTPase: KAP famil 99.0 8.3E-08 1.8E-12 91.0 20.2 169 51-223 18-264 (325)
211 COG3829 RocR Transcriptional r 99.0 1E-08 2.2E-13 98.8 13.2 239 20-292 238-491 (560)
212 PF00158 Sigma54_activat: Sigm 99.0 1.3E-08 2.8E-13 86.2 12.5 140 30-190 1-148 (168)
213 KOG0732 AAA+-type ATPase conta 98.9 1.5E-08 3.2E-13 105.0 15.0 166 28-222 265-451 (1080)
214 PRK07132 DNA polymerase III su 98.9 5.7E-08 1.2E-12 89.7 17.5 147 40-221 4-161 (299)
215 PRK07952 DNA replication prote 98.9 1.4E-08 3.1E-13 90.9 12.9 128 53-208 99-233 (244)
216 PRK10923 glnG nitrogen regulat 98.9 1.2E-08 2.6E-13 101.8 13.8 228 28-293 138-383 (469)
217 TIGR02442 Cob-chelat-sub cobal 98.9 2.1E-08 4.5E-13 102.8 15.7 151 143-299 127-305 (633)
218 cd08768 Cdc6_C Winged-helix do 98.9 5.2E-09 1.1E-13 78.6 8.0 86 311-398 1-87 (87)
219 PTZ00111 DNA replication licen 98.9 1.2E-07 2.5E-12 98.0 20.1 322 29-374 451-903 (915)
220 smart00382 AAA ATPases associa 98.9 1.3E-08 2.8E-13 83.6 10.9 119 53-184 2-125 (148)
221 PRK15115 response regulator Gl 98.9 7E-08 1.5E-12 95.7 18.0 229 29-295 135-381 (444)
222 PRK07276 DNA polymerase III su 98.9 9.3E-08 2E-12 87.5 16.9 164 37-220 7-173 (290)
223 TIGR02915 PEP_resp_reg putativ 98.9 1.6E-08 3.5E-13 100.2 12.8 225 29-291 140-382 (445)
224 PF13173 AAA_14: AAA domain 98.9 1.3E-08 2.7E-13 82.6 10.0 125 53-214 2-127 (128)
225 PRK13765 ATP-dependent proteas 98.9 8.8E-08 1.9E-12 97.0 17.8 140 143-296 227-398 (637)
226 PF10443 RNA12: RNA12 protein; 98.9 1E-07 2.2E-12 90.2 17.0 178 33-223 1-230 (431)
227 PF09079 Cdc6_C: CDC6, C termi 98.9 1.3E-08 2.8E-13 75.9 8.2 83 318-402 1-85 (85)
228 PRK08181 transposase; Validate 98.9 4.5E-08 9.8E-13 89.1 13.1 102 52-184 105-208 (269)
229 KOG1942 DNA helicase, TBP-inte 98.9 8.9E-08 1.9E-12 85.0 14.4 129 142-296 296-436 (456)
230 PRK05917 DNA polymerase III su 98.9 6.7E-08 1.5E-12 88.1 14.2 141 45-210 10-155 (290)
231 PRK06921 hypothetical protein; 98.9 1E-07 2.3E-12 87.0 15.5 126 52-208 116-253 (266)
232 PF07724 AAA_2: AAA domain (Cd 98.8 4.1E-09 9E-14 89.5 5.9 109 53-186 3-131 (171)
233 TIGR01818 ntrC nitrogen regula 98.8 4.4E-08 9.6E-13 97.6 14.2 229 29-295 135-381 (463)
234 PRK05818 DNA polymerase III su 98.8 6E-08 1.3E-12 86.5 13.3 139 52-209 6-147 (261)
235 PHA02244 ATPase-like protein 98.8 3.4E-08 7.3E-13 92.3 12.1 150 29-210 97-262 (383)
236 PF12775 AAA_7: P-loop contain 98.8 2.2E-08 4.7E-13 91.7 9.2 164 34-223 16-194 (272)
237 PF07726 AAA_3: ATPase family 98.8 2.2E-09 4.8E-14 84.5 2.2 119 55-199 1-129 (131)
238 COG3604 FhlA Transcriptional r 98.8 7.4E-08 1.6E-12 91.8 12.1 216 28-279 223-456 (550)
239 COG1220 HslU ATP-dependent pro 98.8 7.5E-07 1.6E-11 80.8 17.6 147 142-298 250-433 (444)
240 PRK09862 putative ATP-dependen 98.8 2E-07 4.3E-12 91.8 15.2 149 142-297 294-491 (506)
241 PRK11361 acetoacetate metaboli 98.8 6.7E-08 1.5E-12 96.2 12.2 227 29-293 144-388 (457)
242 PTZ00202 tuzin; Provisional 98.7 4.2E-07 9E-12 86.1 15.9 169 28-223 262-435 (550)
243 KOG1970 Checkpoint RAD17-RFC c 98.7 5.8E-07 1.3E-11 86.5 17.0 211 30-275 84-319 (634)
244 COG3899 Predicted ATPase [Gene 98.7 2.7E-06 5.9E-11 89.9 23.4 300 30-373 2-355 (849)
245 PRK06526 transposase; Provisio 98.7 3.3E-08 7.3E-13 89.4 7.6 103 52-185 97-201 (254)
246 PF10923 DUF2791: P-loop Domai 98.7 9.3E-06 2E-10 77.8 24.2 79 28-110 25-110 (416)
247 PRK08939 primosomal protein Dn 98.7 2.7E-07 5.8E-12 85.9 13.6 123 32-184 135-260 (306)
248 KOG2680 DNA helicase TIP49, TB 98.7 1.6E-06 3.6E-11 77.4 17.4 138 135-297 281-428 (454)
249 PLN03210 Resistant to P. syrin 98.7 1.9E-06 4.1E-11 95.0 21.5 166 28-222 184-364 (1153)
250 KOG0736 Peroxisome assembly fa 98.7 7.5E-07 1.6E-11 88.9 16.0 160 30-223 403-577 (953)
251 PRK04841 transcriptional regul 98.6 2.5E-06 5.5E-11 92.3 19.6 175 28-223 14-200 (903)
252 KOG1051 Chaperone HSP104 and r 98.6 1.5E-06 3.3E-11 89.7 16.7 137 28-184 562-710 (898)
253 PF01695 IstB_IS21: IstB-like 98.6 2E-07 4.3E-12 79.9 8.8 102 52-184 46-149 (178)
254 COG1484 DnaC DNA replication p 98.6 8E-07 1.7E-11 80.6 13.0 119 33-184 88-208 (254)
255 COG1219 ClpX ATP-dependent pro 98.5 3.8E-06 8.3E-11 75.8 14.1 27 53-79 97-123 (408)
256 PRK09183 transposase/IS protei 98.5 1.7E-06 3.6E-11 78.9 11.5 127 52-208 101-239 (259)
257 PRK10365 transcriptional regul 98.5 1.6E-06 3.6E-11 85.8 12.4 227 30-294 141-385 (441)
258 cd01128 rho_factor Transcripti 98.4 2.6E-07 5.5E-12 83.2 5.6 104 49-157 12-118 (249)
259 cd01120 RecA-like_NTPases RecA 98.4 2.1E-06 4.5E-11 72.4 10.8 38 56-96 2-39 (165)
260 PF03969 AFG1_ATPase: AFG1-lik 98.4 1.3E-06 2.8E-11 83.0 10.2 109 52-186 61-169 (362)
261 COG2909 MalT ATP-dependent tra 98.4 1.3E-05 2.9E-10 81.3 17.0 177 29-224 20-209 (894)
262 PRK13406 bchD magnesium chelat 98.4 4.4E-06 9.5E-11 84.2 13.4 218 38-298 9-250 (584)
263 PF13604 AAA_30: AAA domain; P 98.4 1.3E-06 2.7E-11 76.3 8.0 119 35-183 5-131 (196)
264 COG1373 Predicted ATPase (AAA+ 98.4 2.4E-05 5.2E-10 75.8 17.5 123 55-216 39-161 (398)
265 PF01078 Mg_chelatase: Magnesi 98.4 1.9E-07 4.2E-12 80.4 2.6 45 29-79 4-48 (206)
266 COG1618 Predicted nucleotide k 98.3 1.5E-05 3.2E-10 65.1 12.7 28 53-80 5-32 (179)
267 KOG0745 Putative ATP-dependent 98.3 1.8E-05 3.8E-10 74.4 14.2 38 53-96 226-263 (564)
268 KOG0741 AAA+-type ATPase [Post 98.3 2E-05 4.4E-10 75.7 14.9 137 53-221 538-685 (744)
269 TIGR00767 rho transcription te 98.3 1.9E-06 4.2E-11 81.6 7.5 105 50-157 165-270 (415)
270 PRK12608 transcription termina 98.2 4.6E-06 1E-10 78.5 9.1 111 43-156 123-234 (380)
271 PRK13695 putative NTPase; Prov 98.2 5.8E-06 1.3E-10 70.8 9.1 74 142-222 96-172 (174)
272 PHA00729 NTP-binding motif con 98.2 2.1E-05 4.6E-10 69.1 12.3 30 49-78 13-42 (226)
273 PRK12723 flagellar biosynthesi 98.2 2.7E-05 5.8E-10 74.6 13.6 144 53-212 174-325 (388)
274 PF12774 AAA_6: Hydrolytic ATP 98.2 3.5E-05 7.6E-10 68.7 12.9 144 38-222 19-180 (231)
275 COG0606 Predicted ATPase with 98.2 7.6E-05 1.6E-09 71.6 15.8 43 30-78 181-223 (490)
276 PRK04296 thymidine kinase; Pro 98.2 4.8E-06 1E-10 72.3 6.8 113 54-184 3-115 (190)
277 KOG1051 Chaperone HSP104 and r 98.2 1.6E-05 3.5E-10 82.4 11.6 158 30-217 188-358 (898)
278 PRK00771 signal recognition pa 98.1 0.00031 6.8E-09 68.5 19.1 118 28-155 62-188 (437)
279 PF10236 DAP3: Mitochondrial r 98.1 0.00029 6.3E-09 65.9 18.3 42 39-80 9-50 (309)
280 PRK06581 DNA polymerase III su 98.1 0.0001 2.2E-09 64.8 13.9 153 44-223 5-162 (263)
281 PF03266 NTPase_1: NTPase; In 98.1 2.2E-06 4.8E-11 72.5 3.6 70 142-215 95-164 (168)
282 COG5271 MDN1 AAA ATPase contai 98.1 5E-05 1.1E-09 81.7 13.3 150 52-225 887-1050(4600)
283 KOG0478 DNA replication licens 98.1 8.6E-05 1.9E-09 73.6 14.1 218 54-297 463-723 (804)
284 COG1241 MCM2 Predicted ATPase 98.1 1.4E-05 3.1E-10 80.8 8.7 243 29-298 287-592 (682)
285 KOG2170 ATPase of the AAA+ sup 98.1 1.8E-05 3.9E-10 71.0 8.3 132 29-185 83-225 (344)
286 KOG4658 Apoptotic ATPase [Sign 98.1 0.0004 8.7E-09 73.7 19.8 203 31-278 161-368 (889)
287 COG3284 AcoR Transcriptional a 98.0 6.1E-05 1.3E-09 74.5 12.7 214 31-281 316-542 (606)
288 PF00493 MCM: MCM2/3/5 family 98.0 5.6E-07 1.2E-11 85.0 -2.2 243 29-298 25-326 (331)
289 cd01124 KaiC KaiC is a circadi 98.0 4.1E-05 8.9E-10 66.3 9.6 119 55-185 1-140 (187)
290 PF00448 SRP54: SRP54-type pro 98.0 0.00024 5.2E-09 61.8 14.2 148 53-211 1-152 (196)
291 PRK09376 rho transcription ter 98.0 2.9E-05 6.3E-10 73.4 8.7 104 48-157 164-271 (416)
292 COG3283 TyrR Transcriptional r 98.0 0.00039 8.5E-09 64.1 15.5 218 28-292 204-443 (511)
293 cd01121 Sms Sms (bacterial rad 97.9 5.5E-05 1.2E-09 72.4 10.1 90 53-156 82-172 (372)
294 KOG1968 Replication factor C, 97.9 3.4E-05 7.4E-10 80.6 9.3 176 55-274 359-534 (871)
295 PRK09361 radB DNA repair and r 97.9 0.00022 4.7E-09 63.8 13.4 96 53-155 23-120 (225)
296 smart00763 AAA_PrkA PrkA AAA d 97.9 2.2E-05 4.7E-10 73.7 6.7 51 29-79 52-104 (361)
297 TIGR02858 spore_III_AA stage I 97.9 0.00011 2.3E-09 67.2 11.0 125 48-189 106-233 (270)
298 PRK14700 recombination factor 97.9 9.7E-05 2.1E-09 67.1 9.7 109 172-297 5-114 (300)
299 TIGR01613 primase_Cterm phage/ 97.9 0.00024 5.1E-09 66.6 12.7 47 33-79 54-102 (304)
300 PHA02774 E1; Provisional 97.9 0.00011 2.4E-09 72.7 10.6 43 36-78 416-459 (613)
301 PRK14974 cell division protein 97.9 0.00065 1.4E-08 64.0 15.4 96 53-156 140-236 (336)
302 COG1485 Predicted ATPase [Gene 97.8 0.00014 3E-09 67.2 10.1 109 52-186 64-172 (367)
303 KOG0477 DNA replication licens 97.8 0.00044 9.5E-09 68.0 14.0 244 29-298 450-757 (854)
304 PRK06067 flagellar accessory p 97.8 0.00028 6.1E-09 63.5 11.5 125 52-186 24-166 (234)
305 TIGR02237 recomb_radB DNA repa 97.8 0.00021 4.6E-09 63.0 10.5 95 53-156 12-111 (209)
306 KOG0480 DNA replication licens 97.8 0.00016 3.5E-09 71.2 10.3 245 29-300 346-645 (764)
307 PF04665 Pox_A32: Poxvirus A32 97.8 0.00068 1.5E-08 60.3 13.4 150 53-221 13-169 (241)
308 COG4088 Predicted nucleotide k 97.8 0.00047 1E-08 58.8 11.6 106 55-186 3-113 (261)
309 PRK11823 DNA repair protein Ra 97.8 0.00014 3E-09 71.6 10.0 90 53-156 80-170 (446)
310 TIGR02012 tigrfam_recA protein 97.8 0.00023 4.9E-09 66.4 10.8 92 53-156 55-147 (321)
311 PRK10536 hypothetical protein; 97.8 0.00033 7.2E-09 62.7 11.4 42 30-77 57-98 (262)
312 PRK10875 recD exonuclease V su 97.8 0.00013 2.8E-09 74.3 9.6 124 53-184 167-303 (615)
313 KOG2383 Predicted ATPase [Gene 97.8 0.00019 4.2E-09 67.0 9.9 116 53-186 114-235 (467)
314 PRK08533 flagellar accessory p 97.7 0.00043 9.2E-09 62.0 11.8 49 52-105 23-71 (230)
315 COG4608 AppF ABC-type oligopep 97.7 0.00017 3.7E-09 64.4 9.0 136 51-195 37-180 (268)
316 TIGR01618 phage_P_loop phage n 97.7 0.00011 2.3E-09 64.8 7.7 22 53-74 12-33 (220)
317 cd03281 ABC_MSH5_euk MutS5 hom 97.7 5.8E-05 1.3E-09 66.7 5.9 127 53-191 29-160 (213)
318 COG1124 DppF ABC-type dipeptid 97.7 0.00038 8.3E-09 61.0 10.5 53 142-195 159-212 (252)
319 COG3854 SpoIIIAA ncharacterize 97.7 0.00028 6E-09 61.2 9.5 30 51-80 135-164 (308)
320 PF09848 DUF2075: Uncharacteri 97.7 0.00039 8.4E-09 66.7 11.7 24 54-77 2-25 (352)
321 TIGR02768 TraA_Ti Ti-type conj 97.7 0.00028 6E-09 74.0 11.3 109 53-182 368-476 (744)
322 cd00983 recA RecA is a bacter 97.7 0.00033 7.2E-09 65.3 10.7 92 53-156 55-147 (325)
323 COG4650 RtcR Sigma54-dependent 97.7 0.00027 5.9E-09 63.3 9.5 122 30-167 186-307 (531)
324 COG1066 Sms Predicted ATP-depe 97.7 0.00019 4.1E-09 67.5 8.9 140 52-207 92-242 (456)
325 PF06309 Torsin: Torsin; Inte 97.7 0.00066 1.4E-08 53.6 10.6 53 29-81 26-81 (127)
326 COG1125 OpuBA ABC-type proline 97.7 0.00057 1.2E-08 60.3 10.9 42 52-97 26-67 (309)
327 TIGR03574 selen_PSTK L-seryl-t 97.7 0.0008 1.7E-08 61.2 12.6 33 56-91 2-34 (249)
328 cd00046 DEXDc DEAD-like helica 97.7 0.00082 1.8E-08 54.4 11.6 26 55-80 2-27 (144)
329 COG1419 FlhF Flagellar GTP-bin 97.6 0.0029 6.3E-08 60.0 15.9 90 52-153 202-292 (407)
330 PF07088 GvpD: GvpD gas vesicl 97.6 0.00023 4.9E-09 66.5 7.8 142 46-191 3-165 (484)
331 PRK09354 recA recombinase A; P 97.6 0.00063 1.4E-08 64.0 10.8 92 53-156 60-152 (349)
332 COG1116 TauB ABC-type nitrate/ 97.6 0.00041 8.8E-09 61.3 8.9 28 51-78 27-54 (248)
333 PRK10263 DNA translocase FtsK; 97.6 0.0027 5.9E-08 68.4 16.5 166 53-220 1010-1218(1355)
334 TIGR01448 recD_rel helicase, p 97.6 0.0003 6.4E-09 73.5 9.3 116 53-185 338-455 (720)
335 PRK13889 conjugal transfer rel 97.6 0.0007 1.5E-08 72.2 12.0 108 54-183 363-471 (988)
336 PRK15455 PrkA family serine pr 97.6 0.00014 3.1E-09 71.9 6.3 52 29-80 77-130 (644)
337 cd03115 SRP The signal recogni 97.6 0.0027 5.7E-08 54.2 13.6 38 55-95 2-39 (173)
338 PTZ00494 tuzin-like protein; P 97.6 0.0055 1.2E-07 58.7 16.4 169 28-223 371-545 (664)
339 PF06745 KaiC: KaiC; InterPro 97.5 0.00068 1.5E-08 60.7 10.2 120 52-183 18-159 (226)
340 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.00084 1.8E-08 60.5 10.9 119 52-182 20-168 (237)
341 PF13245 AAA_19: Part of AAA d 97.5 0.00012 2.7E-09 52.9 4.4 27 52-78 9-35 (76)
342 COG1126 GlnQ ABC-type polar am 97.5 0.00085 1.8E-08 57.9 9.9 50 142-194 154-205 (240)
343 PRK04328 hypothetical protein; 97.5 0.0011 2.4E-08 60.2 11.4 40 52-94 22-61 (249)
344 PF05970 PIF1: PIF1-like helic 97.5 0.00033 7.3E-09 67.3 8.4 44 37-80 6-49 (364)
345 smart00487 DEXDc DEAD-like hel 97.5 0.0017 3.7E-08 56.0 12.3 24 54-77 25-48 (201)
346 PF04851 ResIII: Type III rest 97.5 0.0012 2.5E-08 56.6 10.9 47 33-79 5-51 (184)
347 cd01131 PilT Pilus retraction 97.5 0.0003 6.5E-09 61.5 7.2 27 54-80 2-28 (198)
348 PRK14722 flhF flagellar biosyn 97.5 0.0025 5.4E-08 60.8 13.8 28 53-80 137-164 (374)
349 PF13207 AAA_17: AAA domain; P 97.5 0.00013 2.8E-09 58.2 4.5 24 55-78 1-24 (121)
350 COG2842 Uncharacterized ATPase 97.5 0.0056 1.2E-07 55.5 15.0 109 53-184 94-202 (297)
351 cd01393 recA_like RecA is a b 97.5 0.0029 6.4E-08 56.5 13.4 102 53-156 19-128 (226)
352 PRK08485 DNA polymerase III su 97.5 0.00048 1E-08 58.8 7.6 69 146-220 58-137 (206)
353 PRK13826 Dtr system oriT relax 97.5 0.00062 1.3E-08 73.1 10.1 109 53-183 397-506 (1102)
354 KOG0482 DNA replication licens 97.5 0.016 3.4E-07 56.2 18.1 309 29-373 343-710 (721)
355 KOG3347 Predicted nucleotide k 97.5 0.00025 5.5E-09 57.0 5.3 27 52-78 6-32 (176)
356 COG4619 ABC-type uncharacteriz 97.4 0.0018 3.9E-08 53.5 10.3 41 52-96 28-68 (223)
357 cd03214 ABC_Iron-Siderophores_ 97.4 0.00062 1.3E-08 58.6 8.2 125 52-186 24-159 (180)
358 PRK05574 holA DNA polymerase I 97.4 0.041 8.9E-07 52.4 21.6 141 141-305 75-220 (340)
359 cd00561 CobA_CobO_BtuR ATP:cor 97.4 0.00088 1.9E-08 55.8 8.7 125 54-186 3-139 (159)
360 TIGR02688 conserved hypothetic 97.4 0.0019 4.2E-08 61.8 11.9 49 23-76 184-232 (449)
361 TIGR01128 holA DNA polymerase 97.4 0.021 4.6E-07 53.4 19.1 142 141-308 45-188 (302)
362 TIGR03881 KaiC_arch_4 KaiC dom 97.4 0.0022 4.8E-08 57.5 11.8 122 52-183 19-164 (229)
363 PF01580 FtsK_SpoIIIE: FtsK/Sp 97.4 0.0056 1.2E-07 53.8 14.2 41 53-93 38-79 (205)
364 TIGR03878 thermo_KaiC_2 KaiC d 97.4 0.0014 3.1E-08 59.8 10.5 37 53-92 36-72 (259)
365 TIGR03499 FlhF flagellar biosy 97.4 0.0029 6.3E-08 58.5 12.5 46 35-80 168-221 (282)
366 COG4178 ABC-type uncharacteriz 97.4 0.00098 2.1E-08 66.7 9.8 130 51-187 417-576 (604)
367 TIGR01447 recD exodeoxyribonuc 97.4 0.00066 1.4E-08 68.9 8.7 28 53-80 160-187 (586)
368 cd01122 GP4d_helicase GP4d_hel 97.4 0.0048 1E-07 56.8 13.8 41 52-94 29-69 (271)
369 PF13481 AAA_25: AAA domain; P 97.4 0.00085 1.8E-08 58.3 8.3 100 53-157 32-156 (193)
370 PF08433 KTI12: Chromatin asso 97.4 0.0017 3.6E-08 59.4 10.3 107 55-185 3-109 (270)
371 cd01394 radB RadB. The archaea 97.4 0.0016 3.6E-08 57.8 10.1 96 53-155 19-116 (218)
372 TIGR02655 circ_KaiC circadian 97.3 0.0016 3.5E-08 65.0 11.1 95 52-156 262-367 (484)
373 PRK05986 cob(I)alamin adenolsy 97.3 0.0012 2.7E-08 56.4 8.7 130 52-186 21-159 (191)
374 TIGR00416 sms DNA repair prote 97.3 0.00098 2.1E-08 65.7 9.3 90 53-156 94-184 (454)
375 PRK11889 flhF flagellar biosyn 97.3 0.015 3.2E-07 55.5 16.6 58 34-94 217-279 (436)
376 TIGR03575 selen_PSTK_euk L-ser 97.3 0.0028 6.1E-08 59.7 11.8 35 56-90 2-36 (340)
377 cd00984 DnaB_C DnaB helicase C 97.3 0.0016 3.6E-08 58.8 10.1 41 52-94 12-52 (242)
378 COG4133 CcmA ABC-type transpor 97.3 0.0025 5.4E-08 53.8 10.1 42 52-97 27-68 (209)
379 PF05272 VirE: Virulence-assoc 97.3 0.00096 2.1E-08 58.0 8.1 45 143-187 96-152 (198)
380 PLN03187 meiotic recombination 97.3 0.0026 5.6E-08 60.1 11.5 98 53-155 126-234 (344)
381 cd03283 ABC_MutS-like MutS-lik 97.3 0.00068 1.5E-08 59.2 7.2 25 53-77 25-49 (199)
382 PF08298 AAA_PrkA: PrkA AAA do 97.3 0.00077 1.7E-08 62.9 7.7 67 28-98 61-129 (358)
383 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.0025 5.4E-08 57.3 11.0 99 53-155 19-128 (235)
384 PRK05973 replicative DNA helic 97.3 0.0018 3.8E-08 57.8 9.8 39 53-94 64-102 (237)
385 PF13479 AAA_24: AAA domain 97.3 0.00069 1.5E-08 60.0 7.1 21 53-73 3-23 (213)
386 TIGR00150 HI0065_YjeE ATPase, 97.3 0.00048 1E-08 55.5 5.5 44 34-79 5-48 (133)
387 PTZ00035 Rad51 protein; Provis 97.3 0.0038 8.3E-08 59.1 12.5 102 53-156 118-227 (337)
388 PRK06696 uridine kinase; Valid 97.3 0.0008 1.7E-08 60.0 7.5 48 32-80 2-49 (223)
389 PRK05703 flhF flagellar biosyn 97.3 0.0098 2.1E-07 58.2 15.5 56 37-94 199-261 (424)
390 cd03287 ABC_MSH3_euk MutS3 hom 97.3 0.00057 1.2E-08 60.6 6.2 127 52-190 30-159 (222)
391 PRK06585 holA DNA polymerase I 97.3 0.043 9.4E-07 52.4 19.7 205 52-311 19-223 (343)
392 PRK07452 DNA polymerase III su 97.3 0.023 5.1E-07 53.8 17.7 146 142-310 61-210 (326)
393 PF00910 RNA_helicase: RNA hel 97.3 0.00024 5.3E-09 55.4 3.3 26 56-81 1-26 (107)
394 PRK10867 signal recognition pa 97.3 0.041 8.8E-07 53.8 19.1 96 53-155 100-196 (433)
395 PF08423 Rad51: Rad51; InterP 97.3 0.0031 6.8E-08 57.4 10.9 99 53-156 37-147 (256)
396 PF00270 DEAD: DEAD/DEAH box h 97.3 0.02 4.3E-07 48.3 15.3 27 53-79 14-41 (169)
397 PF13086 AAA_11: AAA domain; P 97.3 0.00038 8.2E-09 62.3 4.9 23 55-77 19-41 (236)
398 COG1121 ZnuC ABC-type Mn/Zn tr 97.2 0.0017 3.6E-08 58.1 8.7 43 142-186 157-200 (254)
399 TIGR02238 recomb_DMC1 meiotic 97.2 0.0053 1.1E-07 57.5 12.5 102 53-156 96-205 (313)
400 PF02562 PhoH: PhoH-like prote 97.2 0.0031 6.6E-08 54.9 10.1 28 53-80 19-46 (205)
401 PF00154 RecA: recA bacterial 97.2 0.0033 7.2E-08 58.5 11.0 93 53-157 53-146 (322)
402 COG5271 MDN1 AAA ATPase contai 97.2 0.0022 4.8E-08 69.8 10.6 147 53-222 1543-1703(4600)
403 cd03247 ABCC_cytochrome_bd The 97.2 0.00072 1.6E-08 58.0 6.1 38 52-93 27-64 (178)
404 COG1643 HrpA HrpA-like helicas 97.2 0.0082 1.8E-07 62.9 14.6 154 53-213 65-241 (845)
405 cd03243 ABC_MutS_homologs The 97.2 0.00053 1.2E-08 60.2 4.8 24 53-76 29-52 (202)
406 PRK07078 hypothetical protein; 97.2 0.019 4.1E-07 60.0 16.8 91 286-396 658-750 (759)
407 COG2401 ABC-type ATPase fused 97.2 0.00045 9.8E-09 65.0 4.4 50 142-193 525-576 (593)
408 cd03282 ABC_MSH4_euk MutS4 hom 97.2 0.00084 1.8E-08 58.9 5.9 24 53-76 29-52 (204)
409 COG1102 Cmk Cytidylate kinase 97.1 0.00052 1.1E-08 56.2 4.0 42 56-111 3-44 (179)
410 PF07034 ORC3_N: Origin recogn 97.1 0.037 8E-07 52.4 17.2 164 53-222 89-279 (330)
411 TIGR00708 cobA cob(I)alamin ad 97.1 0.0084 1.8E-07 50.6 11.4 126 54-186 6-141 (173)
412 PRK13948 shikimate kinase; Pro 97.1 0.0053 1.2E-07 52.7 10.4 27 52-78 9-35 (182)
413 TIGR00959 ffh signal recogniti 97.1 0.079 1.7E-06 51.8 19.4 42 53-96 99-140 (428)
414 COG1120 FepC ABC-type cobalami 97.1 0.0019 4.1E-08 58.0 7.6 40 52-95 27-66 (258)
415 KOG3928 Mitochondrial ribosome 97.1 0.049 1.1E-06 51.6 17.0 58 29-90 156-213 (461)
416 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.0028 6E-08 53.1 8.3 116 52-186 24-141 (157)
417 cd00544 CobU Adenosylcobinamid 97.1 0.007 1.5E-07 51.3 10.6 87 56-157 2-88 (169)
418 PF13671 AAA_33: AAA domain; P 97.1 0.00038 8.3E-09 57.2 2.9 23 56-78 2-24 (143)
419 cd01129 PulE-GspE PulE/GspE Th 97.1 0.0089 1.9E-07 54.7 12.0 28 52-79 79-106 (264)
420 cd03246 ABCC_Protease_Secretio 97.1 0.0024 5.3E-08 54.5 7.9 28 52-79 27-54 (173)
421 PF13238 AAA_18: AAA domain; P 97.1 0.00048 1E-08 55.4 3.3 22 56-77 1-22 (129)
422 PRK12726 flagellar biosynthesi 97.1 0.023 5E-07 54.0 14.7 41 52-95 205-245 (407)
423 cd03216 ABC_Carb_Monos_I This 97.1 0.0019 4E-08 54.6 7.0 117 51-185 24-142 (163)
424 PRK05800 cobU adenosylcobinami 97.1 0.0077 1.7E-07 51.1 10.6 88 55-156 3-90 (170)
425 COG1122 CbiO ABC-type cobalt t 97.0 0.0031 6.7E-08 56.4 8.4 29 52-80 29-57 (235)
426 PRK08118 topology modulation p 97.0 0.00057 1.2E-08 57.9 3.6 25 55-79 3-27 (167)
427 TIGR00064 ftsY signal recognit 97.0 0.019 4E-07 52.8 13.7 40 53-95 72-111 (272)
428 PF08303 tRNA_lig_kinase: tRNA 97.0 0.018 3.9E-07 47.7 12.0 129 59-223 5-144 (168)
429 TIGR03880 KaiC_arch_3 KaiC dom 97.0 0.0083 1.8E-07 53.5 11.0 40 52-94 15-54 (224)
430 cd03230 ABC_DR_subfamily_A Thi 97.0 0.002 4.4E-08 54.9 6.7 27 52-78 25-51 (173)
431 KOG1808 AAA ATPase containing 97.0 0.0052 1.1E-07 68.6 11.2 164 35-224 423-601 (1856)
432 TIGR02760 TraI_TIGR conjugativ 97.0 0.0045 9.7E-08 71.4 11.1 115 52-184 445-568 (1960)
433 cd03222 ABC_RNaseL_inhibitor T 97.0 0.0017 3.6E-08 55.6 6.0 28 51-78 23-50 (177)
434 TIGR01967 DEAH_box_HrpA ATP-de 97.0 0.0051 1.1E-07 67.3 10.9 25 53-77 82-106 (1283)
435 PRK00131 aroK shikimate kinase 97.0 0.00076 1.7E-08 57.5 3.9 27 52-78 3-29 (175)
436 cd03223 ABCD_peroxisomal_ALDP 97.0 0.0089 1.9E-07 50.6 10.4 28 52-79 26-53 (166)
437 PF01583 APS_kinase: Adenylyls 97.0 0.0011 2.4E-08 54.9 4.6 39 53-94 2-40 (156)
438 PRK14709 hypothetical protein; 97.0 0.048 1.1E-06 54.1 16.9 48 32-79 182-231 (469)
439 cd03238 ABC_UvrA The excision 97.0 0.0036 7.7E-08 53.5 7.8 23 52-74 20-42 (176)
440 PRK12727 flagellar biosynthesi 97.0 0.024 5.1E-07 56.3 14.3 57 35-91 326-389 (559)
441 COG2805 PilT Tfp pilus assembl 97.0 0.024 5.3E-07 51.5 13.2 114 50-190 122-238 (353)
442 PRK06547 hypothetical protein; 97.0 0.0014 3E-08 55.8 5.2 31 48-78 10-40 (172)
443 COG1674 FtsK DNA segregation A 97.0 0.0099 2.1E-07 63.6 12.8 160 53-219 530-715 (858)
444 PRK05541 adenylylsulfate kinas 96.9 0.0014 3E-08 56.2 5.2 30 52-81 6-35 (176)
445 cd02019 NK Nucleoside/nucleoti 96.9 0.00094 2E-08 47.4 3.5 22 56-77 2-23 (69)
446 cd04155 Arl3 Arl3 subfamily. 96.9 0.0089 1.9E-07 50.7 10.3 28 49-76 10-37 (173)
447 TIGR01425 SRP54_euk signal rec 96.9 0.018 3.9E-07 55.9 13.3 148 53-212 100-252 (429)
448 KOG0952 DNA/RNA helicase MER3/ 96.9 0.0094 2E-07 62.3 11.8 146 35-186 109-286 (1230)
449 KOG0060 Long-chain acyl-CoA tr 96.9 0.0091 2E-07 58.8 11.1 44 141-189 587-631 (659)
450 cd03229 ABC_Class3 This class 96.9 0.0018 3.9E-08 55.6 5.9 39 52-94 25-63 (178)
451 PRK06761 hypothetical protein; 96.9 0.0066 1.4E-07 55.6 9.7 27 54-80 4-30 (282)
452 PF00437 T2SE: Type II/IV secr 96.9 0.0015 3.3E-08 60.1 5.7 51 28-80 104-154 (270)
453 cd03280 ABC_MutS2 MutS2 homolo 96.9 0.0015 3.3E-08 57.2 5.4 21 54-74 29-49 (200)
454 PRK12724 flagellar biosynthesi 96.9 0.036 7.9E-07 53.5 14.9 40 53-94 223-262 (432)
455 COG0468 RecA RecA/RadA recombi 96.9 0.017 3.6E-07 52.8 12.1 91 58-156 65-155 (279)
456 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.0038 8.2E-08 51.5 7.3 27 52-78 25-51 (144)
457 COG0378 HypB Ni2+-binding GTPa 96.9 0.0025 5.4E-08 54.1 6.1 43 54-98 14-56 (202)
458 COG2874 FlaH Predicted ATPases 96.9 0.026 5.5E-07 48.8 12.2 135 53-200 28-183 (235)
459 cd03227 ABC_Class2 ABC-type Cl 96.9 0.01 2.2E-07 50.0 10.0 27 53-79 21-47 (162)
460 PRK10416 signal recognition pa 96.9 0.074 1.6E-06 50.0 16.5 46 35-80 87-141 (318)
461 PRK09519 recA DNA recombinatio 96.9 0.0096 2.1E-07 61.9 11.4 92 53-156 60-152 (790)
462 COG0529 CysC Adenylylsulfate k 96.9 0.0025 5.4E-08 53.1 5.8 45 47-94 17-61 (197)
463 PRK09302 circadian clock prote 96.9 0.008 1.7E-07 60.7 10.7 121 52-183 30-175 (509)
464 COG2804 PulE Type II secretory 96.9 0.0036 7.7E-08 61.0 7.7 30 52-81 257-286 (500)
465 smart00534 MUTSac ATPase domai 96.9 0.00097 2.1E-08 57.6 3.5 20 56-75 2-21 (185)
466 COG4615 PvdE ABC-type sideroph 96.8 0.037 8.1E-07 52.2 13.8 53 52-108 348-401 (546)
467 cd03215 ABC_Carb_Monos_II This 96.8 0.0025 5.3E-08 54.9 6.0 28 52-79 25-52 (182)
468 PRK09270 nucleoside triphospha 96.8 0.0043 9.3E-08 55.6 7.8 50 32-81 7-61 (229)
469 PF05707 Zot: Zonular occluden 96.8 0.002 4.3E-08 56.1 5.4 52 142-199 79-137 (193)
470 PHA02624 large T antigen; Prov 96.8 0.0027 5.8E-08 63.4 6.8 42 38-79 415-457 (647)
471 cd03228 ABCC_MRP_Like The MRP 96.8 0.0079 1.7E-07 51.2 9.0 39 51-93 26-64 (171)
472 PF09439 SRPRB: Signal recogni 96.8 0.0021 4.5E-08 54.7 5.2 24 53-76 3-26 (181)
473 COG1123 ATPase components of v 96.8 0.0086 1.9E-07 59.3 10.1 64 142-207 447-512 (539)
474 PRK14529 adenylate kinase; Pro 96.8 0.023 5E-07 50.3 11.9 25 55-79 2-26 (223)
475 COG1117 PstB ABC-type phosphat 96.8 0.018 3.9E-07 49.8 10.5 27 53-80 33-59 (253)
476 TIGR02655 circ_KaiC circadian 96.8 0.011 2.3E-07 59.2 10.8 122 52-184 20-166 (484)
477 cd03266 ABC_NatA_sodium_export 96.8 0.0026 5.7E-08 56.5 5.9 27 52-78 30-56 (218)
478 PRK11131 ATP-dependent RNA hel 96.8 0.012 2.7E-07 64.3 11.8 25 53-77 89-113 (1294)
479 PRK03839 putative kinase; Prov 96.8 0.0012 2.6E-08 56.8 3.5 24 55-78 2-25 (180)
480 cd00227 CPT Chloramphenicol (C 96.8 0.0014 3.1E-08 56.0 3.9 27 53-79 2-28 (175)
481 PF12780 AAA_8: P-loop contain 96.8 0.038 8.1E-07 50.5 13.3 180 29-223 9-211 (268)
482 TIGR02239 recomb_RAD51 DNA rep 96.8 0.011 2.4E-07 55.6 10.1 101 53-155 96-204 (316)
483 PRK00889 adenylylsulfate kinas 96.8 0.0025 5.4E-08 54.5 5.4 38 52-92 3-40 (175)
484 cd03263 ABC_subfamily_A The AB 96.8 0.0033 7.2E-08 55.9 6.3 27 52-78 27-53 (220)
485 PF02367 UPF0079: Uncharacteri 96.8 0.0077 1.7E-07 47.8 7.6 40 39-80 3-42 (123)
486 COG0703 AroK Shikimate kinase 96.7 0.0023 5E-08 53.7 4.8 28 53-80 2-29 (172)
487 PRK13900 type IV secretion sys 96.7 0.0021 4.5E-08 60.8 5.0 40 39-80 148-187 (332)
488 COG4586 ABC-type uncharacteriz 96.7 0.011 2.4E-07 52.9 9.1 138 51-193 48-225 (325)
489 cd03264 ABC_drug_resistance_li 96.7 0.0036 7.8E-08 55.3 6.2 24 55-78 27-50 (211)
490 TIGR02782 TrbB_P P-type conjug 96.7 0.0029 6.2E-08 58.9 5.8 38 40-79 121-158 (299)
491 PRK04301 radA DNA repair and r 96.7 0.014 3E-07 55.0 10.5 57 53-110 102-161 (317)
492 TIGR01970 DEAH_box_HrpB ATP-de 96.7 0.0098 2.1E-07 62.9 10.3 22 53-74 17-38 (819)
493 PF03308 ArgK: ArgK protein; 96.7 0.0056 1.2E-07 54.7 7.2 45 52-97 28-72 (266)
494 PF06414 Zeta_toxin: Zeta toxi 96.7 0.018 3.9E-07 50.3 10.4 44 49-97 11-54 (199)
495 TIGR01359 UMP_CMP_kin_fam UMP- 96.7 0.0013 2.9E-08 56.6 3.2 23 56-78 2-24 (183)
496 PRK13833 conjugal transfer pro 96.7 0.003 6.6E-08 59.1 5.7 36 41-78 134-169 (323)
497 PRK00625 shikimate kinase; Pro 96.7 0.0016 3.4E-08 55.5 3.5 24 55-78 2-25 (173)
498 PRK13851 type IV secretion sys 96.7 0.0021 4.5E-08 60.8 4.7 39 39-79 150-188 (344)
499 PRK11664 ATP-dependent RNA hel 96.7 0.012 2.7E-07 62.2 10.9 20 53-72 20-39 (812)
500 PRK05439 pantothenate kinase; 96.7 0.0063 1.4E-07 56.6 7.8 42 53-94 86-128 (311)
No 1
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-48 Score=365.96 Aligned_cols=360 Identities=17% Similarity=0.213 Sum_probs=314.7
Q ss_pred HHHHhhcCCCCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccc
Q 014789 14 LLRSRLCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGL 93 (418)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~ 93 (418)
+.+++++.++|+| +.+++|++|++++..+|.+.+.+..|.+++|+|+||||||++++.+++++....+. ..++||||.
T Consensus 4 ~~n~~vl~~~~iP-~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~-~~~~yINc~ 81 (366)
T COG1474 4 FKNKDVLLEDYIP-EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSAN-VEVVYINCL 81 (366)
T ss_pred cccccccCCCCCc-ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhcc-CceEEEeee
Confidence 5678899999999 67999999999999999999999999999999999999999999999999987643 338999999
Q ss_pred cCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCC
Q 014789 94 LHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVT 173 (418)
Q Consensus 94 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~ 173 (418)
...++++++.+|+++++ ..|..+.+..+.++.+.+.+... +..+||+|||+|.|....++.||.|+++.....
T Consensus 82 ~~~t~~~i~~~i~~~~~----~~p~~g~~~~~~~~~l~~~~~~~---~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~ 154 (366)
T COG1474 82 ELRTPYQVLSKILNKLG----KVPLTGDSSLEILKRLYDNLSKK---GKTVIVILDEVDALVDKDGEVLYSLLRAPGENK 154 (366)
T ss_pred eCCCHHHHHHHHHHHcC----CCCCCCCchHHHHHHHHHHHHhc---CCeEEEEEcchhhhccccchHHHHHHhhccccc
Confidence 99999999999999997 22567788889999999988874 489999999999999987799999999988777
Q ss_pred CcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHH
Q 014789 174 SQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKE 253 (418)
Q Consensus 174 ~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (418)
.++++|+++|..++.+.++++++|++++..|.|+||+.+|+.+|+..|+... + ..+.++++.+..
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~----~-----------~~~~~~~~vl~l 219 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG----F-----------SAGVIDDDVLKL 219 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh----c-----------cCCCcCccHHHH
Confidence 8999999999999999999999999998889999999999999999998721 1 112446666667
Q ss_pred HHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHHhhhhhhcCCcc
Q 014789 254 IVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCLKRLEVKEQNSY 332 (418)
Q Consensus 254 ~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~~~l~~~~~~~~ 332 (418)
+....+..+||+|.++++|+.|++.|+ ++.+.++.+||.+|..++......+.++.||.+++++|.+++.+. ..+
T Consensus 220 ia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~~~~~~~~~L~~~~ki~L~~i~~~~----~~~ 295 (366)
T COG1474 220 IAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDVLEEVLKTLPLHQKIVLLAIVELT----VEI 295 (366)
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHHHHHHHHHcCCHhHHHHHHHHHHhc----CCC
Confidence 777777778899999999999999997 588999999999999999999999999999999999999998764 789
Q ss_pred cHHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhCCcceeecCCCCccccccccEEEecCHHHHHHHHhhCC
Q 014789 333 NFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFEHLLQRELICFTDNRGYSQSVEFRPVKLLISSIELHQGLKSYC 406 (418)
Q Consensus 333 ~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~g~~~~~~~~~~~l~~~~~~v~~~~~~~~ 406 (418)
+.+++|+.|+.+|+..+. +...+..++..|..+|++... ..++|..++.+.+++..+++.+.+.+..+.
T Consensus 296 ~~~~~y~~y~~~~~~~~~----~~~~~~~ii~~L~~lgiv~~~-~~~~g~~g~~~~i~~~~~~~~~~~~~~~~~ 364 (366)
T COG1474 296 STGELYDVYESLCERLRT----SQRRFSDIISELEGLGIVSAS-LISRGERGRTREISLDLDPEVIREILKLDL 364 (366)
T ss_pred ChHHHHHHHHHHHhhhCc----hHHHHHHHHHHHHhcCeEEee-eccCCCcCceeEeeecCCHHHHHHHHHhhh
Confidence 999999999999999875 555566788888888888753 333446788899999999988888887763
No 2
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=100.00 E-value=2.3e-48 Score=383.77 Aligned_cols=373 Identities=15% Similarity=0.213 Sum_probs=302.0
Q ss_pred HHhhcCCCCccCCCCCChhhhHHHHHHHHHHHHhcCCCce-EEEECCCCCchHHHHHHHHHHHhhhC---C-CCeEEEEE
Q 014789 16 RSRLCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNS-ILLLGPRGSGKIAVLELILTDLLLEY---P-DTISVIKL 90 (418)
Q Consensus 16 ~~~~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~-ill~G~~GtGKT~l~~~~~~~l~~~~---~-~~~~~v~i 90 (418)
-.++|+++|+| +.|+||++|+++|..+|..++.+..+++ ++|+|+||||||++++.+++++.... . ..+.+++|
T Consensus 744 A~rvL~~DYVP-D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYI 822 (1164)
T PTZ00112 744 AIRMMQLDVVP-KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEI 822 (1164)
T ss_pred HHHHcCcccCC-CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEE
Confidence 46789999999 7999999999999999999998766654 57999999999999999999987543 1 23789999
Q ss_pred ccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhc
Q 014789 91 NGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ 170 (418)
Q Consensus 91 n~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~ 170 (418)
||+...++..++..|+.++.... ++.+.+..+.++.++..+... .+...||||||||.|....|++||.|++|+.
T Consensus 823 NCm~Lstp~sIYqvI~qqL~g~~---P~~GlsS~evLerLF~~L~k~--~r~v~IIILDEID~L~kK~QDVLYnLFR~~~ 897 (1164)
T PTZ00112 823 NGMNVVHPNAAYQVLYKQLFNKK---PPNALNSFKILDRLFNQNKKD--NRNVSILIIDEIDYLITKTQKVLFTLFDWPT 897 (1164)
T ss_pred eCCccCCHHHHHHHHHHHHcCCC---CCccccHHHHHHHHHhhhhcc--cccceEEEeehHhhhCccHHHHHHHHHHHhh
Confidence 99999999999999999885432 445555556666666655332 2356799999999999888999999999988
Q ss_pred cCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChh
Q 014789 171 SVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGR 250 (418)
Q Consensus 171 ~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (418)
.....++|||++|..++++.++++++|||....+.|+||+.+|+.+||..|+... ...+++++
T Consensus 898 ~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A-----------------~gVLdDdA 960 (1164)
T PTZ00112 898 KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC-----------------KEIIDHTA 960 (1164)
T ss_pred ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC-----------------CCCCCHHH
Confidence 7778999999999999999999999999987779999999999999999998621 12456777
Q ss_pred HHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHHhhhhhh-cC
Q 014789 251 FKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCLKRLEVK-EQ 329 (418)
Q Consensus 251 ~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~~~l~~~-~~ 329 (418)
+..+++.++..+||+|+|+++|+.|++.+ +...|+.+||.+|...++.+.+.+.+++||.|++++|+|++.+... +.
T Consensus 961 IELIArkVAq~SGDARKALDILRrAgEik--egskVT~eHVrkAleeiE~srI~e~IktLPlHqKLVLlALIlLlk~tg~ 1038 (1164)
T PTZ00112 961 IQLCARKVANVSGDIRKALQICRKAFENK--RGQKIVPRDITEATNQLFDSPLTNAINYLPWPFKMFLTCLIVELRMLND 1038 (1164)
T ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHhhc--CCCccCHHHHHHHHHHHHhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCC
Confidence 77777878888999999999999999873 3458999999999999999999999999999999999999887755 44
Q ss_pred CcccHHHHHHHHHHHHhhcC----CCCccChhHHHHHHHHHHhCCcceeec---------------------C------C
Q 014789 330 NSYNFNSVMKEYKSIHDSFQ----TSDYYSRNVCLRAFEHLLQRELICFTD---------------------N------R 378 (418)
Q Consensus 330 ~~~~~~~v~~~y~~~~~~~~----~~~~~~~~~~~~~~~~L~~~~~i~~~~---------------------~------~ 378 (418)
..+++++||++|+.+|+..+ ..+. +. -+..++..|..+|+|.+.- + .
T Consensus 1039 ~~i~TGEVYerYk~Lce~~Gk~iGv~pl-Tq-RV~d~L~eL~~LGIIl~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1116 (1164)
T PTZ00112 1039 FIIPYKKVLNRYKVLVETSGKYIGMCSN-NE-LFKIMLDKLVKMGILLIRPYIPLESLAKNKNKEALLGFNESSKKNANE 1116 (1164)
T ss_pred CceeHHHHHHHHHHHHHhhhhhcCCCCc-HH-HHHHHHHHHHhcCeEEecCCCchhhhhcccchhhhhcccchhccccCc
Confidence 47999999999999999544 3333 22 4556777788888876410 0 0
Q ss_pred CCc-----------cccccccEEEecCHHHHHHHHhhCCCCCHHHHhh
Q 014789 379 GYS-----------QSVEFRPVKLLISSIELHQGLKSYCSCPVILLKL 415 (418)
Q Consensus 379 g~~-----------~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~ 415 (418)
|.. ...-.+-+.|+|+...+..||.+||.|+..|..|
T Consensus 1117 ~~k~~~~~v~~~i~~~~gd~g~~~~~~~~~~~tal~~d~~~~~~l~~~ 1164 (1164)
T PTZ00112 1117 TSKSTRTQVSAEIDKESGDMGLELNVETQLIITALMKDAECSQKLNFY 1164 (1164)
T ss_pred cccccccccchhhhhhccccceeeeccHhHHHHHHhhCHhHHhhcccC
Confidence 000 0111345789999999999999999988776543
No 3
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-46 Score=333.52 Aligned_cols=399 Identities=33% Similarity=0.560 Sum_probs=340.2
Q ss_pred CCCCChHHHHHHHHHHHhhcCCCCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 1 MGKENPAAEKASNLLRSRLCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
|.+-.+++..-++.+..|+.. ++++ +.|..+|...+...+++.+..++++++++.||+|+|||.++...+.. .++
T Consensus 1 ~~~~~~dl~siqr~l~~rl~~-~~~~---l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~ 75 (408)
T KOG2228|consen 1 MSSRKSDLSSIQRILRERLCG-PHIN---LFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQE 75 (408)
T ss_pred CcchhhhHHHHHHHHHHHhcC-CCcc---eeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHh
Confidence 456677888999999999998 5554 89999999999999999999999999999999999999999998888 556
Q ss_pred CCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCC-CceEEEEEecchhhhhhc-c
Q 014789 81 YPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGL-AHKTIIFVLDEFDLFAQG-K 158 (418)
Q Consensus 81 ~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~viilDEid~l~~~-~ 158 (418)
.++++..+++||..+. +..+++.|..|+..+........+++.+.+..+...|+.... .+.++|+|+||||-+... +
T Consensus 76 ~~E~~l~v~Lng~~~~-dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~r 154 (408)
T KOG2228|consen 76 NGENFLLVRLNGELQT-DKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSR 154 (408)
T ss_pred cCCeEEEEEECccchh-hHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchh
Confidence 6788999999999888 778899999999887655455667889999999999987543 446799999999999987 9
Q ss_pred hhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEe-cCCCHHHHHHHHHHHhcCCCCCCCChHHHHH
Q 014789 159 QRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLF-LPPSKEDMQRLLEHILSLPVDSSLPHAYAVE 237 (418)
Q Consensus 159 ~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~-~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~ 237 (418)
|.+||++||..+....|+++||.|++.+..+.|++||+|||+++.|.+ ++.+.++..++++..+.++.+. ++ +++.
T Consensus 155 QtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~v~~e~--~~-~~~~ 231 (408)
T KOG2228|consen 155 QTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLSVPAEF--SD-FAEK 231 (408)
T ss_pred hHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhcCCccC--cc-HHHH
Confidence 999999999999989999999999999999999999999999988877 4556999999999999866442 22 8899
Q ss_pred HHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHH
Q 014789 238 FNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDCSILELYI 317 (418)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~i 317 (418)
||..+...+.+. ......+|.....+..++-..-...+.+|.+++..+...+..++..+.+.+||..++++
T Consensus 232 wn~~~~~~L~d~---------~sl~k~l~~~~~~l~~~l~~~vas~p~~ta~~~~~v~~~ys~d~Kie~l~gLSvLEL~L 302 (408)
T KOG2228|consen 232 WNRSVQEVLSDH---------RSLSKNLRSLHDLLKNALNRLVASHPLMTAEDLAEVSRQYSVDPKIELLSGLSVLELYL 302 (408)
T ss_pred HHhhhhHhhcch---------hhHHHHHHHhhHHHHhhhhhhhccCcchhHHHHHHHHHHhccChHHHHhcCchHHHHHH
Confidence 997666554443 22334455555555555443333558999999999999999999999999999999999
Q ss_pred HHHHhh-hhhhcCCcccHHHHHHHHHHHHhh-cCCCCccChhHHHHHHHHHHhCCcceeecCCCC-ccccccccEEEecC
Q 014789 318 LVCLKR-LEVKEQNSYNFNSVMKEYKSIHDS-FQTSDYYSRNVCLRAFEHLLQRELICFTDNRGY-SQSVEFRPVKLLIS 394 (418)
Q Consensus 318 L~a~~~-l~~~~~~~~~~~~v~~~y~~~~~~-~~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~g~-~~~~~~~~~~l~~~ 394 (418)
|+|+.+ ....+.++++|+.+|.+|+++.++ ..+...|.++++.++|++|.++++|...+..|. +..++|+.-+|.++
T Consensus 303 II~~~r~~~~ae~~sfNF~lvY~EfrK~iksi~hTs~~~~k~vvlnAfEhL~slelI~p~~~~~~~~lt~e~ql~kLlvd 382 (408)
T KOG2228|consen 303 IICMKRETLIAELNSFNFNLVYAEFRKFIKSIAHTSELWAKTVVLNAFEHLRSLELILPFEDIGGFGLTREYQLGKLLVD 382 (408)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHhhhhheeeEEeecccCCcchhHHHHHhhhhhh
Confidence 999998 444578999999999999999997 566788999999999999999999998877553 46788999999999
Q ss_pred HHHHHHHHhhCCCCCHHHHhhhh
Q 014789 395 SIELHQGLKSYCSCPVILLKLVE 417 (418)
Q Consensus 395 ~~~v~~~~~~~~~~~~~~~~~~~ 417 (418)
..++..++++++.||+.|++|+.
T Consensus 383 ~t~i~~~lrsyr~~Pt~l~rwl~ 405 (408)
T KOG2228|consen 383 ATQIHRGLRSYRPCPTELRRWLH 405 (408)
T ss_pred HHHHHHHHHhcCCcHHHHHHHhh
Confidence 99999999999999999999985
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=100.00 E-value=8.3e-46 Score=360.38 Aligned_cols=371 Identities=19% Similarity=0.240 Sum_probs=308.9
Q ss_pred HHHHHhhcCCCCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcc
Q 014789 13 NLLRSRLCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNG 92 (418)
Q Consensus 13 ~~~~~~~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~ 92 (418)
-+.++..|+|+++| +.++||++|+++|..++.+.+.+..+++++|+||||+|||++++.+++.+.... ..+.++++||
T Consensus 16 ~~~~~~~l~~~~~P-~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in~ 93 (394)
T PRK00411 16 IFKDEEVLEPDYVP-ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYINC 93 (394)
T ss_pred eeCChhhCCCCCcC-CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEEC
Confidence 46688899999999 699999999999999999998877888999999999999999999999987654 2388999999
Q ss_pred ccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhh-hcchhHHHHHHhhhcc
Q 014789 93 LLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFA-QGKQRLLYSLLDAMQS 171 (418)
Q Consensus 93 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~-~~~~~~L~~l~~~~~~ 171 (418)
....+...++..++.++.... .+..+.+..+.++.+.+.+... +.+.||+|||+|.+. ...++.+|.++++...
T Consensus 94 ~~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~~~~~~~l~~~---~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~ 168 (394)
T PRK00411 94 QIDRTRYAIFSEIARQLFGHP--PPSSGLSFDELFDKIAEYLDER---DRVLIVALDDINYLFEKEGNDVLYSLLRAHEE 168 (394)
T ss_pred CcCCCHHHHHHHHHHHhcCCC--CCCCCCCHHHHHHHHHHHHHhc---CCEEEEEECCHhHhhccCCchHHHHHHHhhhc
Confidence 999888889999999886421 1334456777777777777653 478999999999998 3367899999987654
Q ss_pred -CCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChh
Q 014789 172 -VTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGR 250 (418)
Q Consensus 172 -~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (418)
...++.+|+++|+.++.+.+++++.||+....+.|+||+.+++.+|++.++... + ....+++++
T Consensus 169 ~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~----~-----------~~~~~~~~~ 233 (394)
T PRK00411 169 YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG----F-----------YPGVVDDEV 233 (394)
T ss_pred cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh----c-----------ccCCCCHhH
Confidence 334899999999999888899999999987789999999999999999998511 1 011345666
Q ss_pred HHHHHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHHhhhhhhcC
Q 014789 251 FKEIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCLKRLEVKEQ 329 (418)
Q Consensus 251 ~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~~~l~~~~~ 329 (418)
+..+.+..+..+||+|.++++|..|+..|. .+.+.|+.+||.+|...+......+.+.+||.+|+.+|.|++++...+.
T Consensus 234 l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~ 313 (394)
T PRK00411 234 LDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGG 313 (394)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 666666666668999999999999887765 3677899999999999998888889999999999999999998765445
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhCCcceeecCCCCccccccccEEEecCHHHHHHHHhhCCC
Q 014789 330 NSYNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFEHLLQRELICFTDNRGYSQSVEFRPVKLLISSIELHQGLKSYCS 407 (418)
Q Consensus 330 ~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~g~~~~~~~~~~~l~~~~~~v~~~~~~~~~ 407 (418)
..++++++|++|+.+|+.++..+. +++.+..++..|.++|+|.... .|+|..++.+.|+|.+++++|.+++..++.
T Consensus 314 ~~~~~~~i~~~y~~l~~~~~~~~~-~~~~~~~~l~~L~~~glI~~~~-~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (394)
T PRK00411 314 DEVTTGEVYEEYKELCEELGYEPR-THTRFYEYINKLDMLGIINTRY-SGKGGRGRTRLISLSYDPEDVLERLLEDYI 389 (394)
T ss_pred CcccHHHHHHHHHHHHHHcCCCcC-cHHHHHHHHHHHHhcCCeEEEE-ecCCCCCCeEEEEecCCHHHHHHHHHhhhh
Confidence 679999999999999999987543 6677889999999999998654 344567889999999999999999999853
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=100.00 E-value=2.2e-44 Score=346.99 Aligned_cols=356 Identities=18% Similarity=0.237 Sum_probs=287.3
Q ss_pred HHHHhhcCCCCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCC---CCeEEEEE
Q 014789 14 LLRSRLCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYP---DTISVIKL 90 (418)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~---~~~~~v~i 90 (418)
+.++++|+++|+| +.++||++|++.|..++.+.+.+..+++++|+||||||||++++.+++++..... ..+.++++
T Consensus 2 ~~~~~~l~~~~~p-~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~i 80 (365)
T TIGR02928 2 FRNRDLLEPDYVP-DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYV 80 (365)
T ss_pred cCChhhCCCCCCC-CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEE
Confidence 4578899999999 6999999999999999999888777889999999999999999999998875431 22788999
Q ss_pred ccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhh-
Q 014789 91 NGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAM- 169 (418)
Q Consensus 91 n~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~- 169 (418)
||....++..++.+++.++.......+..+.+..+.++.+.+.+... +.+.||||||+|.+....+.+||.++++.
T Consensus 81 n~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~ 157 (365)
T TIGR02928 81 NCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNER---GDSLIIVLDEIDYLVGDDDDLLYQLSRARS 157 (365)
T ss_pred ECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhc---CCeEEEEECchhhhccCCcHHHHhHhcccc
Confidence 99998888899999999985311011233445666667777766543 46899999999999865678999999883
Q ss_pred --ccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhC
Q 014789 170 --QSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILA 247 (418)
Q Consensus 170 --~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (418)
.....++.+|+++|..++.+.+++++.|||.+..+.|+||+.+|+.+|++.++..... ...++
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~---------------~~~~~ 222 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFY---------------DGVLD 222 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhcc---------------CCCCC
Confidence 2234789999999999888889999999998778999999999999999999851110 11234
Q ss_pred ChhHHHHHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHHhhhhh
Q 014789 248 DGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCLKRLEV 326 (418)
Q Consensus 248 ~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~~~l~~ 326 (418)
++.+..+........||+|.++++|+.|+..|. .+.+.|+.+||.+|...+..+...+.+++||.+++.+|.|++++..
T Consensus 223 ~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~~~~~~~i~~l~~~~~~~l~ai~~~~~ 302 (365)
T TIGR02928 223 DGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEKDRLLELIRGLPTHSKLVLLAIANLAA 302 (365)
T ss_pred hhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 454444444445567999999999999987764 3667899999999999998888889999999999999999998876
Q ss_pred hcCCcccHHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhCCcceeecCCCCccccccccEE
Q 014789 327 KEQNSYNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFEHLLQRELICFTDNRGYSQSVEFRPVK 390 (418)
Q Consensus 327 ~~~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~g~~~~~~~~~~~ 390 (418)
.+...++++++|++|+.+|+.++.. +.+.+.+..+++.|..+|+|.... .|+|..|+.+.|.
T Consensus 303 ~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~l~~l~~~gli~~~~-~~~g~~g~~~~~~ 364 (365)
T TIGR02928 303 NDEDPFRTGEVYEVYKEVCEDIGVD-PLTQRRISDLLNELDMLGLVEAEE-RNKGRGGRTREYS 364 (365)
T ss_pred cCCCCccHHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHhcCCeEEEE-EcCCCCCcEEEEe
Confidence 5667899999999999999999864 467778889999999999999753 3344566666654
No 6
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4.2e-44 Score=330.29 Aligned_cols=365 Identities=15% Similarity=0.195 Sum_probs=305.7
Q ss_pred HHHHHHhhcCCCCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEc
Q 014789 12 SNLLRSRLCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLN 91 (418)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in 91 (418)
...-+.+.+-..+.| ..++||+.|+..+..|+...+....++++|++|.||||||.+...++..+..+... +.++|+|
T Consensus 135 ~~~~~~~~l~~t~~p-~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~in 212 (529)
T KOG2227|consen 135 ISEQRSESLLNTAPP-GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYIN 212 (529)
T ss_pred HHHHHHHHHHhcCCC-CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEe
Confidence 333344444445555 79999999999999999999999999999999999999999999999999887643 7889999
Q ss_pred cccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc
Q 014789 92 GLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS 171 (418)
Q Consensus 92 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~ 171 (418)
|...+.+..++..|+..+...... .+...+.+..+...+... ..++|+|+||+|+|....|.+||.+|.|+..
T Consensus 213 c~sl~~~~aiF~kI~~~~~q~~~s----~~~~~~~~~~~~~h~~q~---k~~~llVlDEmD~L~tr~~~vLy~lFewp~l 285 (529)
T KOG2227|consen 213 CTSLTEASAIFKKIFSSLLQDLVS----PGTGMQHLEKFEKHTKQS---KFMLLLVLDEMDHLITRSQTVLYTLFEWPKL 285 (529)
T ss_pred eccccchHHHHHHHHHHHHHHhcC----CchhHHHHHHHHHHHhcc---cceEEEEechhhHHhhcccceeeeehhcccC
Confidence 999999999999999988443311 112244455555555543 3799999999999999999999999999999
Q ss_pred CCCcEEEEEeccCCChHHHHHHHhhcccC--ceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCCh
Q 014789 172 VTSQAVVIGVSCRLDADQLLEKRVRSRFS--HRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADG 249 (418)
Q Consensus 172 ~~~~~~lI~~s~~~~~~~~l~~~v~sr~~--~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (418)
..+++++||++|..|+.+++.+++..++. ++.+.|+||+.+|+.+|+.+|+.-... ..+.+.
T Consensus 286 p~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t----------------~~~~~~ 349 (529)
T KOG2227|consen 286 PNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST----------------SIFLNA 349 (529)
T ss_pred CcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc----------------cccchH
Confidence 99999999999999999999999999654 788999999999999999999961111 123346
Q ss_pred hHHHHHHHHhccccCHHHHHHHHHHHhhcccc-----------------cCCCCChhhHHHHHhccCCCchhhhhcCCCh
Q 014789 250 RFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDL-----------------ESGFLSFENFKTALSNSHRQPKLECIKDCSI 312 (418)
Q Consensus 250 ~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~-----------------~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~ 312 (418)
+++.+++++++.+||+|+++++|+.|+++++. ...+|..+||..++..++.+.......+|+.
T Consensus 350 Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~~~s~~slpl 429 (529)
T KOG2227|consen 350 AIELCARKVAAPSGDLRKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPSARSRESLPL 429 (529)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccChhhhhhhhcCc
Confidence 78899999999999999999999999998752 1135668999999999999888887779999
Q ss_pred HHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhCCcceeecCCCCccccccccEEEe
Q 014789 313 LELYILVCLKRLEVKEQNSYNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFEHLLQRELICFTDNRGYSQSVEFRPVKLL 392 (418)
Q Consensus 313 ~~~~iL~a~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~g~~~~~~~~~~~l~ 392 (418)
+|+++|+.++.+.+.....++.+++|+.|.+.|....+ .++++.+|..+++.|..+|++++... +.+..+.|.|.
T Consensus 430 qqkiilctl~~l~r~~kkd~s~~eL~e~Y~k~C~~~~I-~~ld~tEF~~i~~ilet~gil~l~~~----k~~kl~kv~l~ 504 (529)
T KOG2227|consen 430 QQKIILCTLVLLIRGNKKDVSIAELYEAYLKACQKREI-APLDRTEFLSICDILETQGILRLRRK----KEPKLKKVVLQ 504 (529)
T ss_pred ccchhHHHHHHHHhcccccccHHHHHHHHHHHHHhccC-CcccHHHHHHHHHHHHhhhHHHHhhh----cCCccceEEEe
Confidence 99999999998877655789999999999999997655 56899999999999999999998543 22456779999
Q ss_pred cCHHHHHHHHhhCC
Q 014789 393 ISSIELHQGLKSYC 406 (418)
Q Consensus 393 ~~~~~v~~~~~~~~ 406 (418)
||.+++..|+++..
T Consensus 505 vde~~i~~Al~D~~ 518 (529)
T KOG2227|consen 505 VDEDDIMRALSDKA 518 (529)
T ss_pred cchHHHHHHHhHHH
Confidence 99999999999874
No 7
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=100.00 E-value=2e-42 Score=333.01 Aligned_cols=352 Identities=18% Similarity=0.229 Sum_probs=297.4
Q ss_pred ccCCCCCChhhhHHHHHHHHHHHHhc-CCCceEEEECCCCCchHHHHHHHHHHHhhhC----CCCeEEEEEccccCCChH
Q 014789 25 VVKHLSDSPDSNYSKLKFLVSSSVTE-ACNNSILLLGPRGSGKIAVLELILTDLLLEY----PDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 25 ~~~~~l~gr~~e~~~l~~~l~~~~~~-~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~----~~~~~~v~in~~~~~~~~ 99 (418)
+| +.|+|||.|+.+|..+++.++.. +.+.++||+|.||||||.+|+.+.+.|.... -..|.+++|||+....+.
T Consensus 394 vp-~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~ 472 (767)
T KOG1514|consen 394 VP-ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPR 472 (767)
T ss_pred cc-ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHH
Confidence 77 79999999999999999999988 4567999999999999999999999888433 234999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEE
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVI 179 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI 179 (418)
.+|..|+.++.... ..+...++.+...+.....+..+.||+|||.|.|.++.|++||++|+|+....++++||
T Consensus 473 ~~Y~~I~~~lsg~~-------~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi 545 (767)
T KOG1514|consen 473 EIYEKIWEALSGER-------VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVI 545 (767)
T ss_pred HHHHHHHHhcccCc-------ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEE
Confidence 99999999996553 35556666666666655567789999999999999999999999999999999999999
Q ss_pred EeccCCChHHHH-HHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHH
Q 014789 180 GVSCRLDADQLL-EKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTL 258 (418)
Q Consensus 180 ~~s~~~~~~~~l-~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (418)
+++|.+++++++ ..++.||++.++|.|.||+..|+++|+..||. + -..|.+++++.+.+++
T Consensus 546 ~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~-----~-------------~~~f~~~aielvarkV 607 (767)
T KOG1514|consen 546 AIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLK-----G-------------LDAFENKAIELVARKV 607 (767)
T ss_pred EecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhc-----c-------------hhhcchhHHHHHHHHH
Confidence 999999999865 56999999999999999999999999999996 1 1356788899999999
Q ss_pred hccccCHHHHHHHHHHHhhcccc--------cCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHHhhhhhh-cC
Q 014789 259 VNLDSTVNHLLRFLFLAVSYMDL--------ESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCLKRLEVK-EQ 329 (418)
Q Consensus 259 ~~~~gd~r~~~~~l~~a~~~a~~--------~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~~~l~~~-~~ 329 (418)
++.+||+|+++++|++|.+.+.. ..+.|++.||.+|++.+........+.+||.+++.+|.|++..... +.
T Consensus 608 AavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~~~~i~glS~~~k~fl~ai~~e~~~~g~ 687 (767)
T KOG1514|consen 608 AAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASPYIKALKGLSFLQKIFLTAIVAETEGTGL 687 (767)
T ss_pred HhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhhHHHHhcchHHHHHHHHHHHHHHHhhcch
Confidence 99999999999999999998753 2256899999999999999999999999999999999999876554 55
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCccChhHHHHHH--HHHHhCCcceeecCCCCccccccccEEEecCHHHHHHHHhhCCC
Q 014789 330 NSYNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAF--EHLLQRELICFTDNRGYSQSVEFRPVKLLISSIELHQGLKSYCS 407 (418)
Q Consensus 330 ~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~--~~L~~~~~i~~~~~~g~~~~~~~~~~~l~~~~~~v~~~~~~~~~ 407 (418)
....|.+||.++..+|+.++...+++. .+...+ ..|.+.+++..... ......+++|+++.+|+.-|++.+-.
T Consensus 688 ~e~~~~~v~~~~~~i~~~~~~~~~~~~-~~~~i~~~~~l~~e~l~l~~~~----~~~r~~~v~L~~~~~ei~~A~~~d~e 762 (767)
T KOG1514|consen 688 EEATLDEVYSEVVTICRKNGGPKPSSD-IAKVICGVNDLGSERLVLVEPE----ENDRSLRVKLNIPSDEIKYALKDDEE 762 (767)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCccHH-HHHHHHhhhhccccceEEEecC----ccchhhhhhcCCCHHHHHHHhhcchh
Confidence 788999999999999999987655442 233344 44444444443222 23567889999999999999998843
No 8
>PF14629 ORC4_C: Origin recognition complex (ORC) subunit 4 C-terminus
Probab=99.88 E-value=7.5e-21 Score=167.16 Aligned_cols=189 Identities=33% Similarity=0.480 Sum_probs=168.2
Q ss_pred HHHHHHhcCCCCC----CCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhH
Q 014789 216 RLLEHILSLPVDS----SLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENF 291 (418)
Q Consensus 216 ~il~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v 291 (418)
++++..|.++.+. ..++.+.+.||+.++.++.++.+...+++.+..+.+++.+.+.+..++..+....+.++..++
T Consensus 2 ~i~~~~L~l~~~~~~~~~~~~~~~~~WN~~I~~l~~~~~~~~~L~~~~~~~~~~~~l~~~~~~~v~~l~~~~~~l~~~~~ 81 (203)
T PF14629_consen 2 EIFKSLLSLPSEFIESSLPDPSYVKQWNKSIESLLKDSNVKRLLRKLYYTSKSIRSLKNSLIPAVSRLSPSSPFLTASDF 81 (203)
T ss_pred hHHHhhCCCCcccccccccchHHHHHHHHHHHHHHcChHHHHHHHHHHhhcCCHHHHHHHHHHHHHhccccCCCCCHHHH
Confidence 4666777766553 247899999999999999999999999999999999999999999999888888889999999
Q ss_pred HHHHhccCCCchhhhhcCCChHHHHHHHHHhhhhhhcCC-cccHHHHHHHHHHHHhhcCCC-------CccChhHHHHHH
Q 014789 292 KTALSNSHRQPKLECIKDCSILELYILVCLKRLEVKEQN-SYNFNSVMKEYKSIHDSFQTS-------DYYSRNVCLRAF 363 (418)
Q Consensus 292 ~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~~~l~~~~~~-~~~~~~v~~~y~~~~~~~~~~-------~~~~~~~~~~~~ 363 (418)
..+.....++.....+.+||..|+++|+|++|+. ++.+ .+||+++|++|++++++.+.. ..++|.+++++|
T Consensus 82 ~~~~~~~~~d~~~~~l~~LS~LEL~LLIa~~rl~-~~~~~~~NF~~vy~EY~~~~~~~~~~~~~~~~~~~~~k~v~~~a~ 160 (203)
T PF14629_consen 82 FSANSNQSPDSKLSLLKSLSVLELCLLIAAARLI-KGYEETFNFEMVYDEYKKFAKSYNSSSAIVGTIKVWSKPVALKAW 160 (203)
T ss_pred HHHHHhhCCCchhhHhccCCHHHHHHHHHHHHHH-hccCCCccHHHHHHHHHHHHHhhccccccccccccCCHHHHHHHH
Confidence 9888888888888889999999999999999999 6555 999999999999999999877 789999999999
Q ss_pred HHHHhCCccee-ecCCCCccccccccEEEecCHHHHHHHHhhC
Q 014789 364 EHLLQRELICF-TDNRGYSQSVEFRPVKLLISSIELHQGLKSY 405 (418)
Q Consensus 364 ~~L~~~~~i~~-~~~~g~~~~~~~~~~~l~~~~~~v~~~~~~~ 405 (418)
++|.++|++.. ....|.....+++++++.++++||.++++++
T Consensus 161 E~L~~l~Ll~~~~~~~~~~~~~e~r~~~l~it~~el~~~v~~~ 203 (203)
T PF14629_consen 161 EHLLSLELLKPNYDGSSNNVQKEFRMVQLDITLEELREAVKKH 203 (203)
T ss_pred HHHHHCCCceecccCCCCccCccceEEEEeCCHHHHHHHHhcC
Confidence 99999999998 4445556789999999999999999999874
No 9
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.87 E-value=2.3e-20 Score=175.32 Aligned_cols=265 Identities=15% Similarity=0.187 Sum_probs=181.5
Q ss_pred CCCChhhhHHHHHHHHHHHHhcC-CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEA-CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~-~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
.++|++++++.|..++....... .+++++|+||||+|||++++.+++.+... + ..+++....... .+..
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~----~--~~~~~~~~~~~~----~l~~ 74 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN----L--KITSGPALEKPG----DLAA 74 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC----E--EEeccchhcCch----hHHH
Confidence 58999999999999887654433 36789999999999999999999887532 2 222222111111 1111
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhc---------------cC
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ---------------SV 172 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~---------------~~ 172 (418)
.+... +.+.+++|||+|.+....++.|+.+++... ..
T Consensus 75 -------------------------~l~~~---~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~ 126 (305)
T TIGR00635 75 -------------------------ILTNL---EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD 126 (305)
T ss_pred -------------------------HHHhc---ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec
Confidence 11111 245699999999998876677776654222 11
Q ss_pred CCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHH
Q 014789 173 TSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFK 252 (418)
Q Consensus 173 ~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (418)
..++++|++++.. ..+.+.+.|||. ..+.|.||+.+++.++++..... ....++++++.
T Consensus 127 ~~~~~li~~t~~~---~~l~~~l~sR~~-~~~~l~~l~~~e~~~il~~~~~~-----------------~~~~~~~~al~ 185 (305)
T TIGR00635 127 LPPFTLVGATTRA---GMLTSPLRDRFG-IILRLEFYTVEELAEIVSRSAGL-----------------LNVEIEPEAAL 185 (305)
T ss_pred CCCeEEEEecCCc---cccCHHHHhhcc-eEEEeCCCCHHHHHHHHHHHHHH-----------------hCCCcCHHHHH
Confidence 2357889998874 456778999995 56899999999999999987641 01123444444
Q ss_pred HHHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHHhhhhhhcCCc
Q 014789 253 EIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCLKRLEVKEQNS 331 (418)
Q Consensus 253 ~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~~~l~~~~~~~ 331 (418)
.+++. ..|++|.++.++..+...+. .+...|+.+++.++...+... ..+++.+++.+|.|+..... .++
T Consensus 186 ~ia~~---~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l~~~-----~~~l~~~~~~~L~al~~~~~--~~~ 255 (305)
T TIGR00635 186 EIARR---SRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEMLMID-----ELGLDEIDRKLLSVLIEQFQ--GGP 255 (305)
T ss_pred HHHHH---hCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCC-----CCCCCHHHHHHHHHHHHHhC--CCc
Confidence 44432 46899999999988765553 244679999999998774222 47899999999998865432 345
Q ss_pred ccHHHHHHHHHHHHhhcCCCCccChhHHHHHHH-HHHhCCcce
Q 014789 332 YNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFE-HLLQRELIC 373 (418)
Q Consensus 332 ~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~-~L~~~~~i~ 373 (418)
++..++ |..+|..+..-+ .+++ +|.+.|+|.
T Consensus 256 ~~~~~i-------a~~lg~~~~~~~----~~~e~~Li~~~li~ 287 (305)
T TIGR00635 256 VGLKTL-------AAALGEDADTIE----DVYEPYLLQIGFLQ 287 (305)
T ss_pred ccHHHH-------HHHhCCCcchHH----HhhhHHHHHcCCcc
Confidence 666555 888877554333 5678 799999996
No 10
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=7.3e-20 Score=165.06 Aligned_cols=215 Identities=19% Similarity=0.255 Sum_probs=150.9
Q ss_pred CCCChhhhHHHHHHHHHHHHhcC---------CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEA---------CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~---------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
.+-|.++|+++|.+.++--++++ +|..++||||||||||.++++++++.. ..++++.++..-
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~------AtFIrvvgSElV--- 222 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD------ATFIRVVGSELV--- 222 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC------ceEEEeccHHHH---
Confidence 46789999999999988766664 488999999999999999999998765 445777764322
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----------chhHHHHHHhh
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----------KQRLLYSLLDA 168 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----------~~~~L~~l~~~ 168 (418)
+ ..-+ .-..+...++.+.++ +.|.||||||+|.+..+ -|..+..|+..
T Consensus 223 ---q----KYiG----------EGaRlVRelF~lAre----kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~q 281 (406)
T COG1222 223 ---Q----KYIG----------EGARLVRELFELARE----KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQ 281 (406)
T ss_pred ---H----HHhc----------cchHHHHHHHHHHhh----cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHh
Confidence 1 1111 112344555665555 36999999999999874 35566666665
Q ss_pred hcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHH---hcCCCCCCCChHHHHHHHHH
Q 014789 169 MQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHI---LSLPVDSSLPHAYAVEFNKK 241 (418)
Q Consensus 169 ~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~---l~~~~~~~~~~~~~~~~~~~ 241 (418)
... ...++-||++||+. +.|+|++.+ ||. +.|.||.++.+...+|++-. +.+.
T Consensus 282 lDGFD~~~nvKVI~ATNR~---D~LDPALLRPGR~D-RkIEfplPd~~gR~~Il~IHtrkM~l~---------------- 341 (406)
T COG1222 282 LDGFDPRGNVKVIMATNRP---DILDPALLRPGRFD-RKIEFPLPDEEGRAEILKIHTRKMNLA---------------- 341 (406)
T ss_pred ccCCCCCCCeEEEEecCCc---cccChhhcCCCccc-ceeecCCCCHHHHHHHHHHHhhhccCc----------------
Confidence 544 34689999999995 467888875 776 78999999977666666554 3322
Q ss_pred HHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccCC
Q 014789 242 IKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSHR 300 (418)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~~ 300 (418)
++-.++.+++..-+.+| -.+..+|..|+-.|- .....||.+||.+|..++..
T Consensus 342 -----~dvd~e~la~~~~g~sG--AdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 342 -----DDVDLELLARLTEGFSG--ADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred -----cCcCHHHHHHhcCCCch--HHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence 12234455554444444 234467777776663 47779999999999987654
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.84 E-value=2.6e-19 Score=169.38 Aligned_cols=266 Identities=15% Similarity=0.187 Sum_probs=183.2
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc-CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE-ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIA 106 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~-~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~ 106 (418)
+.++|++++.+.+...+...... ..+++++|+||||+|||++++.+++.+... +..+++...... ..+.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~------~~~~~~~~~~~~-~~l~--- 94 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN------IRITSGPALEKP-GDLA--- 94 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC------eEEEecccccCh-HHHH---
Confidence 35899999999999988776443 346789999999999999999999987632 233333222111 0111
Q ss_pred HHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc---------------
Q 014789 107 RQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------------- 171 (418)
Q Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------------- 171 (418)
..+... +.+.||+|||+|.+....++.++.+++....
T Consensus 95 -------------------------~~l~~l---~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~ 146 (328)
T PRK00080 95 -------------------------AILTNL---EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL 146 (328)
T ss_pred -------------------------HHHHhc---ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee
Confidence 111111 2456999999999987667777777653210
Q ss_pred CCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhH
Q 014789 172 VTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRF 251 (418)
Q Consensus 172 ~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (418)
.-.++++|++|+... .+.+.++|||. ..+.|++|+.+++.+|++...... ...++++++
T Consensus 147 ~l~~~~li~at~~~~---~l~~~L~sRf~-~~~~l~~~~~~e~~~il~~~~~~~-----------------~~~~~~~~~ 205 (328)
T PRK00080 147 DLPPFTLIGATTRAG---LLTSPLRDRFG-IVQRLEFYTVEELEKIVKRSARIL-----------------GVEIDEEGA 205 (328)
T ss_pred cCCCceEEeecCCcc---cCCHHHHHhcC-eeeecCCCCHHHHHHHHHHHHHHc-----------------CCCcCHHHH
Confidence 113478899998743 46678899996 468999999999999999876411 112344444
Q ss_pred HHHHHHHhccccCHHHHHHHHHHHhhcccc-cCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHHhhhhhhcCC
Q 014789 252 KEIVNTLVNLDSTVNHLLRFLFLAVSYMDL-ESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCLKRLEVKEQN 330 (418)
Q Consensus 252 ~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~-~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~~~l~~~~~~ 330 (418)
..++.. ..|++|.+..++..+...+.. +...|+.+++..+...+... ...|+..++.+|.++.... ..+
T Consensus 206 ~~ia~~---~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~~~~-----~~~l~~~~~~~l~~~~~~~--~~~ 275 (328)
T PRK00080 206 LEIARR---SRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDMLGVD-----ELGLDEMDRKYLRTIIEKF--GGG 275 (328)
T ss_pred HHHHHH---cCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC-----cCCCCHHHHHHHHHHHHHc--CCC
Confidence 444432 469999999999887655432 45689999999998765332 3589999999998776542 245
Q ss_pred cccHHHHHHHHHHHHhhcCCCCccChhHHHHHHH-HHHhCCcce
Q 014789 331 SYNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFE-HLLQRELIC 373 (418)
Q Consensus 331 ~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~-~L~~~~~i~ 373 (418)
+++...+ +...|..... +-..++ +|.+.|+|.
T Consensus 276 ~~~~~~~-------a~~lg~~~~~----~~~~~e~~Li~~~li~ 308 (328)
T PRK00080 276 PVGLDTL-------AAALGEERDT----IEDVYEPYLIQQGFIQ 308 (328)
T ss_pred ceeHHHH-------HHHHCCCcch----HHHHhhHHHHHcCCcc
Confidence 6888777 6666654332 224667 999999996
No 12
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.84 E-value=6.5e-19 Score=154.17 Aligned_cols=236 Identities=15% Similarity=0.191 Sum_probs=171.2
Q ss_pred hcCCCCccCCCCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC
Q 014789 19 LCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD 97 (418)
Q Consensus 19 ~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~ 97 (418)
.+.|.+. +.++|.++..+++.-++..+-..+. -.+++++||||.||||+++.+++++.... -..++-....
T Consensus 19 ~lRP~~l--~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~------k~tsGp~leK 90 (332)
T COG2255 19 SLRPKTL--DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNL------KITSGPALEK 90 (332)
T ss_pred ccCcccH--HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe------EecccccccC
Confidence 3444444 3589999999999999988755544 67999999999999999999999987431 1122222221
Q ss_pred hHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc------
Q 014789 98 DCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS------ 171 (418)
Q Consensus 98 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~------ 171 (418)
+.+ +-. ++..|+ ..-|+||||||.+.+...++||..++-...
T Consensus 91 ~gD-laa-------------------------iLt~Le------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~ 138 (332)
T COG2255 91 PGD-LAA-------------------------ILTNLE------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGK 138 (332)
T ss_pred hhh-HHH-------------------------HHhcCC------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEcc
Confidence 111 111 122222 345999999999999888999998754321
Q ss_pred ---------CCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH
Q 014789 172 ---------VTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKI 242 (418)
Q Consensus 172 ---------~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 242 (418)
.-.++.+||+|++.. .+...+++||+ ...++.-|+.+|+.+|+.....+ +
T Consensus 139 gp~Arsv~ldLppFTLIGATTr~G---~lt~PLrdRFG-i~~rlefY~~~eL~~Iv~r~a~~-----------------l 197 (332)
T COG2255 139 GPAARSIRLDLPPFTLIGATTRAG---MLTNPLRDRFG-IIQRLEFYTVEELEEIVKRSAKI-----------------L 197 (332)
T ss_pred CCccceEeccCCCeeEeeeccccc---cccchhHHhcC-CeeeeecCCHHHHHHHHHHHHHH-----------------h
Confidence 125899999999854 56678899998 45789999999999999886431 1
Q ss_pred HHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHH
Q 014789 243 KNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCL 321 (418)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~ 321 (418)
.--+++++..+++++ ..|.+|.+..++++....|. .++..|+.+-..+|++.+..+.. +|...++.+|.++
T Consensus 198 ~i~i~~~~a~eIA~r---SRGTPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L~Vd~~-----GLd~~D~k~L~~l 269 (332)
T COG2255 198 GIEIDEEAALEIARR---SRGTPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKMLDVDEL-----GLDEIDRKYLRAL 269 (332)
T ss_pred CCCCChHHHHHHHHh---ccCCcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHhCcccc-----cccHHHHHHHHHH
Confidence 112345555555554 46999999999999888876 57889999999999998876653 7888888888887
Q ss_pred hh
Q 014789 322 KR 323 (418)
Q Consensus 322 ~~ 323 (418)
.+
T Consensus 270 i~ 271 (332)
T COG2255 270 IE 271 (332)
T ss_pred HH
Confidence 75
No 13
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.83 E-value=1.8e-19 Score=165.12 Aligned_cols=213 Identities=21% Similarity=0.262 Sum_probs=146.8
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++|.+.-+-. -..|.+.+.++.-+++++||||||||||+++.++...... +..+|+...... -++++++.
T Consensus 25 e~vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~------f~~~sAv~~gvk--dlr~i~e~ 95 (436)
T COG2256 25 EVVGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA------FEALSAVTSGVK--DLREIIEE 95 (436)
T ss_pred HhcChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc------eEEeccccccHH--HHHHHHHH
Confidence 35565554433 3456677788889999999999999999999999876543 477776554422 24444433
Q ss_pred HHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChH
Q 014789 109 LCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDAD 188 (418)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~ 188 (418)
.... ...++..||||||+|.|....|+.|.-.++ +..+++||+|+..+ .
T Consensus 96 a~~~-------------------------~~~gr~tiLflDEIHRfnK~QQD~lLp~vE-----~G~iilIGATTENP-s 144 (436)
T COG2256 96 ARKN-------------------------RLLGRRTILFLDEIHRFNKAQQDALLPHVE-----NGTIILIGATTENP-S 144 (436)
T ss_pred HHHH-------------------------HhcCCceEEEEehhhhcChhhhhhhhhhhc-----CCeEEEEeccCCCC-C
Confidence 2111 112468999999999999888888877665 37899999998866 3
Q ss_pred HHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHH
Q 014789 189 QLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHL 268 (418)
Q Consensus 189 ~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~ 268 (418)
..+.+.++||+ +.+.|.|++.+++.++++..+... ..++.. ....-++.+...+... ..||.|.+
T Consensus 145 F~ln~ALlSR~--~vf~lk~L~~~di~~~l~ra~~~~-~rgl~~----------~~~~i~~~a~~~l~~~--s~GD~R~a 209 (436)
T COG2256 145 FELNPALLSRA--RVFELKPLSSEDIKKLLKRALLDE-ERGLGG----------QIIVLDEEALDYLVRL--SNGDARRA 209 (436)
T ss_pred eeecHHHhhhh--heeeeecCCHHHHHHHHHHHHhhh-hcCCCc----------ccccCCHHHHHHHHHh--cCchHHHH
Confidence 45789999999 689999999999999999855411 111110 0011133344444444 35999999
Q ss_pred HHHHHHHhhcccccCCCCChhhHHHHHhc
Q 014789 269 LRFLFLAVSYMDLESGFLSFENFKTALSN 297 (418)
Q Consensus 269 ~~~l~~a~~~a~~~~~~it~~~v~~a~~~ 297 (418)
++.+..+...++.+. .++.+.+.+.+.+
T Consensus 210 LN~LE~~~~~~~~~~-~~~~~~l~~~l~~ 237 (436)
T COG2256 210 LNLLELAALSAEPDE-VLILELLEEILQR 237 (436)
T ss_pred HHHHHHHHHhcCCCc-ccCHHHHHHHHhh
Confidence 999998877765544 4447777776654
No 14
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=1.1e-18 Score=167.81 Aligned_cols=273 Identities=14% Similarity=0.168 Sum_probs=165.1
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
.++|.+.....|...+ ..+. ++.++++||||||||++++.+++.+....+... ..|..+.+ ...+..
T Consensus 19 dvVGQe~iv~~L~~~i----~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~----~pCg~C~s----C~~i~~ 86 (484)
T PRK14956 19 DVIHQDLAIGALQNAL----KSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN----EPCNECTS----CLEITK 86 (484)
T ss_pred HHhChHHHHHHHHHHH----HcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc----cccCCCcH----HHHHHc
Confidence 5789888888766665 4444 556899999999999999999999876532111 11222221 111111
Q ss_pred HHHHhh-hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 108 QLCMEH-QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 108 ~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
...... ........+.++ .+.+.+.+......+++.|+||||+|.|....++.|.. ..+....++++|++|+.
T Consensus 87 g~~~dviEIdaas~~gVd~-IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLK---tLEEPp~~viFILaTte-- 160 (484)
T PRK14956 87 GISSDVLEIDAASNRGIEN-IRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLK---TLEEPPAHIVFILATTE-- 160 (484)
T ss_pred cCCccceeechhhcccHHH-HHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHH---HhhcCCCceEEEeecCC--
Confidence 110000 000000111221 22233333322233567899999999998755555544 44445578899999887
Q ss_pred hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHH
Q 014789 187 ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVN 266 (418)
Q Consensus 187 ~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r 266 (418)
...+.+.+.||+ ..+.|.+++.+++.+.++..+.. +++ .++++++ ..+.+. ..||+|
T Consensus 161 -~~kI~~TI~SRC--q~~~f~~ls~~~i~~~L~~i~~~---Egi--------------~~e~eAL-~~Ia~~--S~Gd~R 217 (484)
T PRK14956 161 -FHKIPETILSRC--QDFIFKKVPLSVLQDYSEKLCKI---ENV--------------QYDQEGL-FWIAKK--GDGSVR 217 (484)
T ss_pred -hhhccHHHHhhh--heeeecCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHH-HHHHHH--cCChHH
Confidence 567889999999 57999999999999999987641 111 1234433 333333 359999
Q ss_pred HHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCCChH--HHHHHHHHhhhhhhcCCcccH-HHHHHHHHH
Q 014789 267 HLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDCSIL--ELYILVCLKRLEVKEQNSYNF-NSVMKEYKS 343 (418)
Q Consensus 267 ~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~--~~~iL~a~~~l~~~~~~~~~~-~~v~~~y~~ 343 (418)
.+++++..++.. ....||.++|.+.+.-...+.....++.+-.. ....|..+.++...|.++-.| .++.+.++.
T Consensus 218 dAL~lLeq~i~~---~~~~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~ 294 (484)
T PRK14956 218 DMLSFMEQAIVF---TDSKLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHT 294 (484)
T ss_pred HHHHHHHHHHHh---CCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999887765 23469999998888665444444555444332 223444555555555454444 455555555
Q ss_pred HH
Q 014789 344 IH 345 (418)
Q Consensus 344 ~~ 345 (418)
+.
T Consensus 295 l~ 296 (484)
T PRK14956 295 LN 296 (484)
T ss_pred HH
Confidence 43
No 15
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.80 E-value=8.2e-18 Score=167.56 Aligned_cols=238 Identities=13% Similarity=0.140 Sum_probs=145.2
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIA 106 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~ 106 (418)
+.++|.+..++.|...+ ..+. ++.+||+||+|+|||++++.+++.+..+.+.. ...|..+. ..+.+.
T Consensus 16 dEVIGQe~Vv~~L~~aL----~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~----~~PCG~C~----sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHAL----DGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT----SQPCGVCR----ACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHH----hcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC----CCCCcccH----HHHHHh
Confidence 35899999988877765 4444 55668999999999999999999987543110 01121111 011111
Q ss_pred HHHHHhh-hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCC
Q 014789 107 RQLCMEH-QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRL 185 (418)
Q Consensus 107 ~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~ 185 (418)
..-.... .+......+.++ ...+.+.+......++..|+||||+|.|....++.|...++. ...++.||++||.
T Consensus 84 ~G~h~DviEIDAas~rgVDd-IReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE---PP~~v~FILaTtd- 158 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDE-MAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE---PPPHVKFILATTD- 158 (830)
T ss_pred cCCCceEEEecccccccHHH-HHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh---cCCCeEEEEEECC-
Confidence 1000000 000000111222 222233322222234678999999999987655555555443 3467889999887
Q ss_pred ChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCH
Q 014789 186 DADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTV 265 (418)
Q Consensus 186 ~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 265 (418)
...+.+.++||| ..+.|.+++.+++.+.|+..+.. +++ .++++.+. .+.+. ..||+
T Consensus 159 --~~KIp~TIrSRC--q~f~Fk~Ls~eeIv~~L~~Il~~---EgI--------------~id~eAL~-lIA~~--A~Gsm 214 (830)
T PRK07003 159 --PQKIPVTVLSRC--LQFNLKQMPAGHIVSHLERILGE---ERI--------------AFEPQALR-LLARA--AQGSM 214 (830)
T ss_pred --hhhccchhhhhe--EEEecCCcCHHHHHHHHHHHHHH---cCC--------------CCCHHHHH-HHHHH--cCCCH
Confidence 567788999999 67999999999999999887641 111 12333333 33333 35999
Q ss_pred HHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcC
Q 014789 266 NHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKD 309 (418)
Q Consensus 266 r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~ 309 (418)
|.+++++.+++.. +...|+.++|...+.....+.+.+.+..
T Consensus 215 RdALsLLdQAia~---~~~~It~~~V~~~LG~~d~~~i~~ll~a 255 (830)
T PRK07003 215 RDALSLTDQAIAY---SANEVTETAVSGMLGALDQTYMVRLLDA 255 (830)
T ss_pred HHHHHHHHHHHHh---ccCCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999888765 3446888888877766555444444433
No 16
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=4.4e-17 Score=159.31 Aligned_cols=221 Identities=16% Similarity=0.209 Sum_probs=142.0
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCC------------------CeEEEE
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPD------------------TISVIK 89 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~------------------~~~~v~ 89 (418)
.++|.+.....|... +..+. +++++++||||||||++++.+++.+....+. ...++.
T Consensus 15 divGq~~i~~~L~~~----i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 15 EVVGQDHVKKLIINA----LKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred HccCcHHHHHHHHHH----HHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 578987775555544 44555 4568999999999999999999988753211 011222
Q ss_pred EccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhh
Q 014789 90 LNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAM 169 (418)
Q Consensus 90 in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~ 169 (418)
+++.... +.++ ...+.+........+.+.|+||||+|.|....++.|...++
T Consensus 91 l~aa~~~-------------------------gid~-iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE-- 142 (472)
T PRK14962 91 LDAASNR-------------------------GIDE-IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLE-- 142 (472)
T ss_pred EeCcccC-------------------------CHHH-HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHH--
Confidence 3221111 1111 12233333322223467899999999997655555544444
Q ss_pred ccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCCh
Q 014789 170 QSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADG 249 (418)
Q Consensus 170 ~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (418)
.....+++|++++. +..+.+++.||+ ..+.|.|++.+++..+++..+.. .++ .++++
T Consensus 143 -~p~~~vv~Ilattn---~~kl~~~L~SR~--~vv~f~~l~~~el~~~L~~i~~~---egi--------------~i~~e 199 (472)
T PRK14962 143 -EPPSHVVFVLATTN---LEKVPPTIISRC--QVIEFRNISDELIIKRLQEVAEA---EGI--------------EIDRE 199 (472)
T ss_pred -hCCCcEEEEEEeCC---hHhhhHHHhcCc--EEEEECCccHHHHHHHHHHHHHH---cCC--------------CCCHH
Confidence 33456788887774 457889999999 57999999999999999988641 011 23444
Q ss_pred hHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCC
Q 014789 250 RFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDC 310 (418)
Q Consensus 250 ~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L 310 (418)
++..++.. ..||+|.+++.+..+...+ ...||.++|.+++.....+.....++.+
T Consensus 200 al~~Ia~~---s~GdlR~aln~Le~l~~~~---~~~It~e~V~~~l~~~~~~~i~~li~si 254 (472)
T PRK14962 200 ALSFIAKR---ASGGLRDALTMLEQVWKFS---EGKITLETVHEALGLIPIEVVRDYINAI 254 (472)
T ss_pred HHHHHHHH---hCCCHHHHHHHHHHHHHhc---CCCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44444432 3699999999998866542 2359999999998776554444444433
No 17
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.79 E-value=7.5e-19 Score=151.07 Aligned_cols=199 Identities=18% Similarity=0.237 Sum_probs=125.0
Q ss_pred hhcCCCCccCCCCCChhhhHHHHHHHHHHHHhc-CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCC
Q 014789 18 RLCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTE-ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHS 96 (418)
Q Consensus 18 ~~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~-~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~ 96 (418)
..+.|... +.++|.++.+..+.-++..+... ....++++|||||+||||+++.+++++... +..+++....
T Consensus 16 ~~lRP~~L--~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~------~~~~sg~~i~ 87 (233)
T PF05496_consen 16 ERLRPKSL--DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN------FKITSGPAIE 87 (233)
T ss_dssp HHTS-SSC--CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--------EEEEECCC--
T ss_pred HhcCCCCH--HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC------eEeccchhhh
Confidence 34555554 46899999999998888776543 346799999999999999999999998754 3455653332
Q ss_pred ChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc-----
Q 014789 97 DDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS----- 171 (418)
Q Consensus 97 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~----- 171 (418)
...+ +..++.++ . ...||+|||||.|....|+.||..++-..-
T Consensus 88 k~~d-l~~il~~l-------------------------~------~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG 135 (233)
T PF05496_consen 88 KAGD-LAAILTNL-------------------------K------EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIG 135 (233)
T ss_dssp SCHH-HHHHHHT---------------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBS
T ss_pred hHHH-HHHHHHhc-------------------------C------CCcEEEEechhhccHHHHHHHHHHhccCeEEEEec
Confidence 2211 12222211 1 245999999999999899999998864321
Q ss_pred C----------CCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH
Q 014789 172 V----------TSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKK 241 (418)
Q Consensus 172 ~----------~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~ 241 (418)
. -.++.+||+|++. ..+.+.+++||+ -..++..|+.+++.+|++....+-.
T Consensus 136 ~g~~ar~~~~~l~~FTligATTr~---g~ls~pLrdRFg-i~~~l~~Y~~~el~~Iv~r~a~~l~--------------- 196 (233)
T PF05496_consen 136 KGPNARSIRINLPPFTLIGATTRA---GLLSSPLRDRFG-IVLRLEFYSEEELAKIVKRSARILN--------------- 196 (233)
T ss_dssp SSSS-BEEEEE----EEEEEESSG---CCTSHCCCTTSS-EEEE----THHHHHHHHHHCCHCTT---------------
T ss_pred cccccceeeccCCCceEeeeeccc---cccchhHHhhcc-eecchhcCCHHHHHHHHHHHHHHhC---------------
Confidence 1 1468999999985 456788999997 3468999999999999987643110
Q ss_pred HHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhccc
Q 014789 242 IKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMD 280 (418)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~ 280 (418)
--++++.+.+++++ ..|++|.+.++++++..+|.
T Consensus 197 --i~i~~~~~~~Ia~r---srGtPRiAnrll~rvrD~a~ 230 (233)
T PF05496_consen 197 --IEIDEDAAEEIARR---SRGTPRIANRLLRRVRDFAQ 230 (233)
T ss_dssp ---EE-HHHHHHHHHC---TTTSHHHHHHHHHHHCCCCC
T ss_pred --CCcCHHHHHHHHHh---cCCChHHHHHHHHHHHHHHH
Confidence 01233444444442 46999999999999877654
No 18
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=1.9e-17 Score=168.09 Aligned_cols=227 Identities=16% Similarity=0.209 Sum_probs=137.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIA 106 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~ 106 (418)
+.++|.+..++.|.+.+ ..+. ++.++|+||||+|||++++.+++.+........ ..|..+.. ...+.
T Consensus 16 ddIIGQe~Iv~~LknaI----~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~----~pCg~C~s----C~~i~ 83 (944)
T PRK14949 16 EQMVGQSHVLHALTNAL----TQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTA----TPCGVCSS----CVEIA 83 (944)
T ss_pred HHhcCcHHHHHHHHHHH----HhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCC----CCCCCchH----HHHHh
Confidence 35889999988877665 4444 455689999999999999999999876421000 01111100 00010
Q ss_pred HHHHHhhhccccc--CCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 107 RQLCMEHQLLFSK--MASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 107 ~~l~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
....... ..+.. ..+.++ ++.+.+.+......++..|+||||+|.|....++.|...++ .....+.+|++++.
T Consensus 84 ~g~~~Dv-iEidAas~~kVDd-IReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLE---EPP~~vrFILaTTe 158 (944)
T PRK14949 84 QGRFVDL-IEVDAASRTKVDD-TRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLE---EPPEHVKFLLATTD 158 (944)
T ss_pred cCCCceE-EEeccccccCHHH-HHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHh---ccCCCeEEEEECCC
Confidence 0000000 00000 011111 22333333322234578899999999997755555554444 44467888888776
Q ss_pred CChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccC
Q 014789 185 LDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDST 264 (418)
Q Consensus 185 ~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd 264 (418)
...+.+.++||| ..+.|.|++.+++.++|++++... ++ .++++++. .+.+. ..|+
T Consensus 159 ---~~kLl~TIlSRC--q~f~fkpLs~eEI~~~L~~il~~E---gI--------------~~edeAL~-lIA~~--S~Gd 213 (944)
T PRK14949 159 ---PQKLPVTVLSRC--LQFNLKSLTQDEIGTQLNHILTQE---QL--------------PFEAEALT-LLAKA--ANGS 213 (944)
T ss_pred ---chhchHHHHHhh--eEEeCCCCCHHHHHHHHHHHHHHc---CC--------------CCCHHHHH-HHHHH--cCCC
Confidence 345778899999 679999999999999999987511 11 12333333 33333 3699
Q ss_pred HHHHHHHHHHHhhcccccCCCCChhhHHHHHhccC
Q 014789 265 VNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSH 299 (418)
Q Consensus 265 ~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~ 299 (418)
+|.++++|..++.. +...++.+.|.+.+....
T Consensus 214 ~R~ALnLLdQala~---~~~~It~~~V~~llG~iD 245 (944)
T PRK14949 214 MRDALSLTDQAIAF---GGGQVMLTQVQTMLGSID 245 (944)
T ss_pred HHHHHHHHHHHHHh---cCCcccHHHHHHHhCCCC
Confidence 99999999887754 344677777666554443
No 19
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=2e-17 Score=162.87 Aligned_cols=243 Identities=13% Similarity=0.145 Sum_probs=146.2
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCC-eEEEEEccccCCChHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDT-ISVIKLNGLLHSDDCCAFKEIA 106 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~-~~~v~in~~~~~~~~~~~~~i~ 106 (418)
.++|.+...+.|.+.+. .+. ++.+||+||+|+|||++++.+++.+....+.. .....-.|..+. ..+.|.
T Consensus 17 dVIGQe~vv~~L~~al~----~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~----sC~~I~ 88 (700)
T PRK12323 17 TLVGQEHVVRALTHALE----QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR----ACTEID 88 (700)
T ss_pred HHcCcHHHHHHHHHHHH----hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH----HHHHHH
Confidence 58999988887777663 334 55678999999999999999999987632100 000000111111 111111
Q ss_pred HHHHHhh-hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCC
Q 014789 107 RQLCMEH-QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRL 185 (418)
Q Consensus 107 ~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~ 185 (418)
..-.... .+......+.++. ..+.+.+......++..|+||||+|.|....++.| ++..+....++.||++||.
T Consensus 89 aG~hpDviEIdAas~~gVDdI-ReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNAL---LKTLEEPP~~v~FILaTte- 163 (700)
T PRK12323 89 AGRFVDYIEMDAASNRGVDEM-AQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAM---LKTLEEPPEHVKFILATTD- 163 (700)
T ss_pred cCCCCcceEecccccCCHHHH-HHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHH---HHhhccCCCCceEEEEeCC-
Confidence 1000000 0000011122222 22333333333345788999999999977544444 4444444577889999987
Q ss_pred ChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCH
Q 014789 186 DADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTV 265 (418)
Q Consensus 186 ~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 265 (418)
...+.+.++||| +.+.|.+++.+++.+.++..+.. +++ .++++++. .+.+. ..|++
T Consensus 164 --p~kLlpTIrSRC--q~f~f~~ls~eei~~~L~~Il~~---Egi--------------~~d~eAL~-~IA~~--A~Gs~ 219 (700)
T PRK12323 164 --PQKIPVTVLSRC--LQFNLKQMPPGHIVSHLDAILGE---EGI--------------AHEVNALR-LLAQA--AQGSM 219 (700)
T ss_pred --hHhhhhHHHHHH--HhcccCCCChHHHHHHHHHHHHH---cCC--------------CCCHHHHH-HHHHH--cCCCH
Confidence 667889999999 67999999999999998887641 111 11233333 33322 46999
Q ss_pred HHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCCC
Q 014789 266 NHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDCS 311 (418)
Q Consensus 266 r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~ 311 (418)
|.+++++..++.. +...|+.++|.+.+.....+...+.+..|.
T Consensus 220 RdALsLLdQaia~---~~~~It~~~V~~~LG~~d~~~i~~Ll~aL~ 262 (700)
T PRK12323 220 RDALSLTDQAIAY---SAGNVSEEAVRGMLGAIDQSYLVRLLDALA 262 (700)
T ss_pred HHHHHHHHHHHHh---ccCCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999999887754 345688888888776655444444444433
No 20
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=4.6e-17 Score=160.70 Aligned_cols=225 Identities=16% Similarity=0.207 Sum_probs=146.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCC------------------eEEEE
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDT------------------ISVIK 89 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~------------------~~~v~ 89 (418)
+.++|.+...+.|...+. .+..++.++++||||+|||++++.+++.+....+.. +.++.
T Consensus 15 ddVIGQe~vv~~L~~aI~---~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 15 NELVGQNHVSRALSSALE---RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred HHhcCcHHHHHHHHHHHH---cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 368999998887777664 223366779999999999999999999987533110 11222
Q ss_pred EccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhh
Q 014789 90 LNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAM 169 (418)
Q Consensus 90 in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~ 169 (418)
+++.... +.++ .+.+.+.+......+++.|+||||+|.|....++.|..+++.
T Consensus 92 IDAAs~~-------------------------~Vdd-IReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE- 144 (702)
T PRK14960 92 IDAASRT-------------------------KVED-TRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE- 144 (702)
T ss_pred ecccccC-------------------------CHHH-HHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-
Confidence 2221111 1111 122222222222234678999999999987666666665554
Q ss_pred ccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCCh
Q 014789 170 QSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADG 249 (418)
Q Consensus 170 ~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (418)
....+.+|++++. ...+.+.+.||+ ..+.|.|++.+++.+.+...+.- .++ .++++
T Consensus 145 --PP~~v~FILaTtd---~~kIp~TIlSRC--q~feFkpLs~eEI~k~L~~Il~k---EgI--------------~id~e 200 (702)
T PRK14960 145 --PPEHVKFLFATTD---PQKLPITVISRC--LQFTLRPLAVDEITKHLGAILEK---EQI--------------AADQD 200 (702)
T ss_pred --CCCCcEEEEEECC---hHhhhHHHHHhh--heeeccCCCHHHHHHHHHHHHHH---cCC--------------CCCHH
Confidence 3366788888866 445667888999 57999999999999999988641 111 12334
Q ss_pred hHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCCCh
Q 014789 250 RFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDCSI 312 (418)
Q Consensus 250 ~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~ 312 (418)
++..+++ . ..||+|.+++++..++.. +...|+.++|...+.....+.+.+.+..+..
T Consensus 201 AL~~IA~-~--S~GdLRdALnLLDQaIay---g~g~IT~edV~~lLG~~d~e~IfdLldAI~k 257 (702)
T PRK14960 201 AIWQIAE-S--AQGSLRDALSLTDQAIAY---GQGAVHHQDVKEMLGLIDRTIIYDLILAVHQ 257 (702)
T ss_pred HHHHHHH-H--cCCCHHHHHHHHHHHHHh---cCCCcCHHHHHHHhccCCHHHHHHHHHHHHh
Confidence 3433333 2 359999999999887765 4567999999888776655555555554443
No 21
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=3.1e-17 Score=161.98 Aligned_cols=242 Identities=13% Similarity=0.148 Sum_probs=150.7
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
+.++|.+...+.|...+.. +.-++.++++||||+|||++++.+++.+....+... -.|..+. ..+.|..
T Consensus 16 ~divGq~~v~~~L~~~~~~---~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~----~pCg~C~----~C~~i~~ 84 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQ---QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA----NPCNDCE----NCREIDE 84 (509)
T ss_pred HHhcCCHHHHHHHHHHHHh---CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc----ccCCCCH----HHHHHhc
Confidence 3589999998887777633 233566799999999999999999999876431100 0111111 0111110
Q ss_pred HHHHhh-hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 108 QLCMEH-QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 108 ~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
.-.... ........+.++ .+.+.+.+......+++.|+||||+|.|....++.|...++. ....+.+|++|++
T Consensus 85 g~~~d~~eidaas~~~v~~-iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe---pp~~~~fIlattd-- 158 (509)
T PRK14958 85 GRFPDLFEVDAASRTKVED-TRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE---PPSHVKFILATTD-- 158 (509)
T ss_pred CCCceEEEEcccccCCHHH-HHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc---cCCCeEEEEEECC--
Confidence 000000 000001112222 222333333333345778999999999987655555555444 4467888888865
Q ss_pred hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHH
Q 014789 187 ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVN 266 (418)
Q Consensus 187 ~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r 266 (418)
...+.+.+.||+ ..+.|.+++.+++.+.+...+.- .++ .++++++..+++ . ..||+|
T Consensus 159 -~~kl~~tI~SRc--~~~~f~~l~~~~i~~~l~~il~~---egi--------------~~~~~al~~ia~-~--s~GslR 215 (509)
T PRK14958 159 -HHKLPVTVLSRC--LQFHLAQLPPLQIAAHCQHLLKE---ENV--------------EFENAALDLLAR-A--ANGSVR 215 (509)
T ss_pred -hHhchHHHHHHh--hhhhcCCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHHHHH-H--cCCcHH
Confidence 456667799999 56899999999999998888751 111 123333333333 3 359999
Q ss_pred HHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCCCh
Q 014789 267 HLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDCSI 312 (418)
Q Consensus 267 ~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~ 312 (418)
.+++++..++.. +...||.++|.+.+.....+...+.+..|..
T Consensus 216 ~al~lLdq~ia~---~~~~It~~~V~~~lg~~~~~~i~~ll~al~~ 258 (509)
T PRK14958 216 DALSLLDQSIAY---GNGKVLIADVKTMLGTIEPLLLFDILEALAA 258 (509)
T ss_pred HHHHHHHHHHhc---CCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc
Confidence 999999887765 4568999999988877766666666665554
No 22
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=3.9e-17 Score=160.21 Aligned_cols=248 Identities=17% Similarity=0.128 Sum_probs=151.0
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++|.+.....|...+. .+..+++++++||||+|||++++.+++.+....+..-......|..+.. ...+...
T Consensus 22 dliGq~~vv~~L~~ai~---~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~----C~~i~~~ 94 (507)
T PRK06645 22 ELQGQEVLVKVLSYTIL---NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN----CISFNNH 94 (507)
T ss_pred HhcCcHHHHHHHHHHHH---cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH----HHHHhcC
Confidence 47888888877666542 2334788999999999999999999999875431000000001111110 1111100
Q ss_pred HHHhh-hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCCh
Q 014789 109 LCMEH-QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDA 187 (418)
Q Consensus 109 l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~ 187 (418)
..... ........+.++. +.+.+........+.+.|+||||+|.+....++.|...+ +.....+++|++++.
T Consensus 95 ~h~Dv~eidaas~~~vd~I-r~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~L---Eepp~~~vfI~aTte--- 167 (507)
T PRK06645 95 NHPDIIEIDAASKTSVDDI-RRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTL---EEPPPHIIFIFATTE--- 167 (507)
T ss_pred CCCcEEEeeccCCCCHHHH-HHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHH---hhcCCCEEEEEEeCC---
Confidence 00000 0000011122222 223333333333456789999999999765444444444 444567788888765
Q ss_pred HHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHH
Q 014789 188 DQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNH 267 (418)
Q Consensus 188 ~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~ 267 (418)
...+.+.++||+ ..+.|.+++.+++.++++.++.-. +. .++++++..++. . ..||+|.
T Consensus 168 ~~kI~~tI~SRc--~~~ef~~ls~~el~~~L~~i~~~e---gi--------------~ie~eAL~~Ia~-~--s~GslR~ 225 (507)
T PRK06645 168 VQKIPATIISRC--QRYDLRRLSFEEIFKLLEYITKQE---NL--------------KTDIEALRIIAY-K--SEGSARD 225 (507)
T ss_pred hHHhhHHHHhcc--eEEEccCCCHHHHHHHHHHHHHHc---CC--------------CCCHHHHHHHHH-H--cCCCHHH
Confidence 456888999999 578999999999999999987511 11 123444444443 2 3599999
Q ss_pred HHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCCCh
Q 014789 268 LLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDCSI 312 (418)
Q Consensus 268 ~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~ 312 (418)
+++.+.+++..+......||.++|.+.+.....+...+.+..+..
T Consensus 226 al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~~ 270 (507)
T PRK06645 226 AVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVEYIIH 270 (507)
T ss_pred HHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc
Confidence 999999987765433447999999998877766666555555443
No 23
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=7.1e-17 Score=154.40 Aligned_cols=241 Identities=15% Similarity=0.130 Sum_probs=147.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIA 106 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~ 106 (418)
+.++|.+...+.+...+ ..+. ++.++++||||+|||++++.+++.+....+... -.|..+.+ ..++.
T Consensus 16 ~~iiGq~~~~~~l~~~~----~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~----~pc~~c~~----c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGL----SLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS----NPCRKCII----CKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHH----HcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC----CCCCCCHH----HHHHh
Confidence 35789999888776665 3334 566789999999999999999999864321100 01111110 11111
Q ss_pred HHHHHhhh-cccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCC
Q 014789 107 RQLCMEHQ-LLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRL 185 (418)
Q Consensus 107 ~~l~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~ 185 (418)
........ ......... +..+.+.+.+......+.+.|+||||+|.+....++.|...++ ..+..+.+|++++.
T Consensus 84 ~~~~~d~~~~~~~~~~~v-~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lE---e~~~~~~fIl~t~~- 158 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKV-EEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLE---EPPQHIKFILATTD- 158 (363)
T ss_pred cCCCCceEEecccccCCH-HHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHh---cCCCCeEEEEEcCC-
Confidence 11000000 000000111 2223333333332233467899999999997654544444444 33456778888765
Q ss_pred ChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCH
Q 014789 186 DADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTV 265 (418)
Q Consensus 186 ~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 265 (418)
.+.+.+.+.||+ ..+.|+|++.+++.+++..++... + ..++++++..++. . ..||+
T Consensus 159 --~~~l~~tI~SRc--~~~~~~~l~~~el~~~L~~~~~~~---g--------------~~i~~~al~~ia~-~--s~G~~ 214 (363)
T PRK14961 159 --VEKIPKTILSRC--LQFKLKIISEEKIFNFLKYILIKE---S--------------IDTDEYALKLIAY-H--AHGSM 214 (363)
T ss_pred --hHhhhHHHHhhc--eEEeCCCCCHHHHHHHHHHHHHHc---C--------------CCCCHHHHHHHHH-H--cCCCH
Confidence 456888999999 579999999999999999987511 1 0123343433333 2 35999
Q ss_pred HHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCCCh
Q 014789 266 NHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDCSI 312 (418)
Q Consensus 266 r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~ 312 (418)
|.+++.+..++.. +...|+.++|.+++.....+...+.+..+..
T Consensus 215 R~al~~l~~~~~~---~~~~It~~~v~~~l~~~~~~~i~~l~~ai~~ 258 (363)
T PRK14961 215 RDALNLLEHAINL---GKGNINIKNVTDMLGLLNEKQSFLLTDALLK 258 (363)
T ss_pred HHHHHHHHHHHHh---cCCCCCHHHHHHHHCCCCHHHHHHHHHHHHc
Confidence 9999999887765 4668999999998876665555555555443
No 24
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.77 E-value=3.1e-17 Score=157.98 Aligned_cols=224 Identities=18% Similarity=0.239 Sum_probs=145.5
Q ss_pred CCccCCCCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccc
Q 014789 23 NFVVKHLSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGL 93 (418)
Q Consensus 23 ~~~~~~~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~ 93 (418)
++.+ +.+.|++++++.|.+.+...+.. ..+.+++|+||||||||++++++++.+.. .++.++|.
T Consensus 127 ~~~~-~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~------~~i~v~~~ 199 (389)
T PRK03992 127 NVTY-EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA------TFIRVVGS 199 (389)
T ss_pred CCCH-HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC------CEEEeehH
Confidence 3444 46889999999999988664444 34778999999999999999999988753 24666653
Q ss_pred cCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----------chhHH
Q 014789 94 LHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----------KQRLL 162 (418)
Q Consensus 94 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----------~~~~L 162 (418)
..... .. +........+++.... ..|.||+|||+|.+... .+..+
T Consensus 200 ~l~~~----------~~----------g~~~~~i~~~f~~a~~----~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l 255 (389)
T PRK03992 200 ELVQK----------FI----------GEGARLVRELFELARE----KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTL 255 (389)
T ss_pred HHhHh----------hc----------cchHHHHHHHHHHHHh----cCCeEEEEechhhhhcccccCCCCccHHHHHHH
Confidence 32110 00 0111122223333322 35889999999999632 23456
Q ss_pred HHHHhhhcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc-CCCCCCCChHHHHH
Q 014789 163 YSLLDAMQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS-LPVDSSLPHAYAVE 237 (418)
Q Consensus 163 ~~l~~~~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~-~~~~~~~~~~~~~~ 237 (418)
..++..... ...++.||++||.. +.+++.+.+ ||. +.|.|++|+.++..+|++..+. ...+.
T Consensus 256 ~~lL~~ld~~~~~~~v~VI~aTn~~---~~ld~allRpgRfd-~~I~v~~P~~~~R~~Il~~~~~~~~~~~--------- 322 (389)
T PRK03992 256 MQLLAEMDGFDPRGNVKIIAATNRI---DILDPAILRPGRFD-RIIEVPLPDEEGRLEILKIHTRKMNLAD--------- 322 (389)
T ss_pred HHHHHhccccCCCCCEEEEEecCCh---hhCCHHHcCCccCc-eEEEECCCCHHHHHHHHHHHhccCCCCC---------
Confidence 666654432 23578999999984 567788875 886 5799999999999999998765 11111
Q ss_pred HHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccCCCc
Q 014789 238 FNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSHRQP 302 (418)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~~~~ 302 (418)
+-.+..++....+. ....+..+|+.|...|- .+...|+.+||.+|+..+.+..
T Consensus 323 ----------~~~~~~la~~t~g~--sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 323 ----------DVDLEELAELTEGA--SGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred ----------cCCHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhccc
Confidence 11233344433232 33444456776665543 3567899999999998876543
No 25
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=3.7e-17 Score=163.55 Aligned_cols=232 Identities=14% Similarity=0.175 Sum_probs=145.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIA 106 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~ 106 (418)
+.++|.+..++.|...+ ..+. ++.++|+||+|+|||++++.+++.+....+. ..-.|..+ ..|
T Consensus 16 ~divGQe~vv~~L~~~l----~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~----~~~pCg~C--------~~C 79 (647)
T PRK07994 16 AEVVGQEHVLTALANAL----DLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGI----TATPCGEC--------DNC 79 (647)
T ss_pred HHhcCcHHHHHHHHHHH----HcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCC----CCCCCCCC--------HHH
Confidence 35889998888776665 4444 4556899999999999999999998764310 00112222 122
Q ss_pred HHHHHhhh-----cccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEe
Q 014789 107 RQLCMEHQ-----LLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGV 181 (418)
Q Consensus 107 ~~l~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~ 181 (418)
.++..... +......+.++ .+.+.+.+......+++.|+||||+|.|....++.|...++. ....+.+|++
T Consensus 80 ~~i~~g~~~D~ieidaas~~~Vdd-iR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE---Pp~~v~FIL~ 155 (647)
T PRK07994 80 REIEQGRFVDLIEIDAASRTKVED-TRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE---PPEHVKFLLA 155 (647)
T ss_pred HHHHcCCCCCceeecccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc---CCCCeEEEEe
Confidence 22211100 00000011222 233334433333345788999999999987666666555554 4467888888
Q ss_pred ccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhcc
Q 014789 182 SCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNL 261 (418)
Q Consensus 182 s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (418)
|+. ...+.+.++||+ ..+.|.|++.+++.+.|...+... ++ .++++++ ..+.+. .
T Consensus 156 Tt~---~~kLl~TI~SRC--~~~~f~~Ls~~ei~~~L~~il~~e---~i--------------~~e~~aL-~~Ia~~--s 210 (647)
T PRK07994 156 TTD---PQKLPVTILSRC--LQFHLKALDVEQIRQQLEHILQAE---QI--------------PFEPRAL-QLLARA--A 210 (647)
T ss_pred cCC---ccccchHHHhhh--eEeeCCCCCHHHHHHHHHHHHHHc---CC--------------CCCHHHH-HHHHHH--c
Confidence 876 456778899998 679999999999999999886411 11 1222323 333333 4
Q ss_pred ccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhh
Q 014789 262 DSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECI 307 (418)
Q Consensus 262 ~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l 307 (418)
.|++|.+++++..++.. +...|+.++|...+.....+...+.+
T Consensus 211 ~Gs~R~Al~lldqaia~---~~~~it~~~v~~~lg~~d~~~~~~ll 253 (647)
T PRK07994 211 DGSMRDALSLTDQAIAS---GNGQVTTDDVSAMLGTLDDDQALSLL 253 (647)
T ss_pred CCCHHHHHHHHHHHHHh---cCCCcCHHHHHHHHccCCHHHHHHHH
Confidence 69999999999887765 44578988888877654433333333
No 26
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=6.8e-17 Score=160.24 Aligned_cols=275 Identities=11% Similarity=0.161 Sum_probs=163.1
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
.++|.+...+.|.+.+ ..+. +++++++||+|+|||++++.+++.+....... .-.|..+. ..+.+..
T Consensus 17 dIiGQe~v~~~L~~ai----~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~----~~pCg~C~----sC~~i~~ 84 (624)
T PRK14959 17 EVAGQETVKAILSRAA----QENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT----GEPCNTCE----QCRKVTQ 84 (624)
T ss_pred HhcCCHHHHHHHHHHH----HcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCC----CCCCcccH----HHHHHhc
Confidence 5678877766655554 4444 77888999999999999999999987532110 00111111 0111111
Q ss_pred HHHHhh-hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 108 QLCMEH-QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 108 ~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
...... .+......+.+ ..+.+.+.+......+...||||||+|.|....++.| +...+.....+++|++++.
T Consensus 85 g~hpDv~eId~a~~~~Id-~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naL---Lk~LEEP~~~~ifILaTt~-- 158 (624)
T PRK14959 85 GMHVDVVEIDGASNRGID-DAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNAL---LKTLEEPPARVTFVLATTE-- 158 (624)
T ss_pred CCCCceEEEecccccCHH-HHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHH---HHHhhccCCCEEEEEecCC--
Confidence 000000 00000001111 1222333333322334678999999999976544444 4444434467888888876
Q ss_pred hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHH
Q 014789 187 ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVN 266 (418)
Q Consensus 187 ~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r 266 (418)
...+.+.++||+ ..+.|.+++.+++.++|...+.- .++ -++++++..+++ . ..||+|
T Consensus 159 -~~kll~TI~SRc--q~i~F~pLs~~eL~~~L~~il~~---egi--------------~id~eal~lIA~-~--s~GdlR 215 (624)
T PRK14959 159 -PHKFPVTIVSRC--QHFTFTRLSEAGLEAHLTKVLGR---EGV--------------DYDPAAVRLIAR-R--AAGSVR 215 (624)
T ss_pred -hhhhhHHHHhhh--hccccCCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHHHHH-H--cCCCHH
Confidence 456667899999 57899999999999999886540 010 133443433333 3 359999
Q ss_pred HHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHH-hhhhhhcCC-cccHHHHHHHHHHH
Q 014789 267 HLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCL-KRLEVKEQN-SYNFNSVMKEYKSI 344 (418)
Q Consensus 267 ~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~-~~l~~~~~~-~~~~~~v~~~y~~~ 344 (418)
.+++++..++.. +...|+.++|.+++.....+.+.+.++.|...+...++.+ ..+...+.+ ...+..++..|+.+
T Consensus 216 ~Al~lLeqll~~---g~~~It~d~V~~~lg~~~~e~vfeLl~AL~~~D~~aal~~l~~Ll~~g~d~~~iL~~Ll~~~RdL 292 (624)
T PRK14959 216 DSMSLLGQVLAL---GESRLTIDGARGVLGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNL 292 (624)
T ss_pred HHHHHHHHHHHh---cCCCcCHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 999999876533 5558999999999877666656666666655444433333 333332322 33467777777776
Q ss_pred Hhh
Q 014789 345 HDS 347 (418)
Q Consensus 345 ~~~ 347 (418)
.-.
T Consensus 293 Ll~ 295 (624)
T PRK14959 293 FML 295 (624)
T ss_pred HHh
Confidence 643
No 27
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.2e-16 Score=155.48 Aligned_cols=220 Identities=16% Similarity=0.147 Sum_probs=145.7
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCC------------------CeEEE
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPD------------------TISVI 88 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~------------------~~~~v 88 (418)
+.++|.+...+.|...+ ..+. +++++++||+|+||||+++.+++.+....+. ...++
T Consensus 13 ~dliGQe~vv~~L~~a~----~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 13 KDLVGQDVLVRILRNAF----TLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred HHhcCcHHHHHHHHHHH----HcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 35789888777666554 3334 6789999999999999999999987654321 12334
Q ss_pred EEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhh
Q 014789 89 KLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDA 168 (418)
Q Consensus 89 ~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~ 168 (418)
++|+...... .-++++ .+........+.+.|+||||+|.|....++.|...++.
T Consensus 89 eidaas~~~v-ddIR~I-------------------------ie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe 142 (491)
T PRK14964 89 EIDAASNTSV-DDIKVI-------------------------LENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEE 142 (491)
T ss_pred EEecccCCCH-HHHHHH-------------------------HHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhC
Confidence 4444322211 112222 22232222334678999999999977655555555444
Q ss_pred hccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCC
Q 014789 169 MQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILAD 248 (418)
Q Consensus 169 ~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (418)
....+.+|++++. .+.+.+.++||+ ..+.|.+++.+++.+.+...+.- ++ ..+++
T Consensus 143 ---Pp~~v~fIlatte---~~Kl~~tI~SRc--~~~~f~~l~~~el~~~L~~ia~~---Eg--------------i~i~~ 197 (491)
T PRK14964 143 ---PAPHVKFILATTE---VKKIPVTIISRC--QRFDLQKIPTDKLVEHLVDIAKK---EN--------------IEHDE 197 (491)
T ss_pred ---CCCCeEEEEEeCC---hHHHHHHHHHhh--eeeecccccHHHHHHHHHHHHHH---cC--------------CCCCH
Confidence 4467888888865 456788999999 57999999999999999987641 11 12344
Q ss_pred hhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhc
Q 014789 249 GRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIK 308 (418)
Q Consensus 249 ~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~ 308 (418)
+++..+++. ..||+|.+++.+..++... ...||.++|.+.+.....+...+.+.
T Consensus 198 eAL~lIa~~---s~GslR~alslLdqli~y~---~~~It~e~V~~llg~~~~~~If~L~~ 251 (491)
T PRK14964 198 ESLKLIAEN---SSGSMRNALFLLEQAAIYS---NNKISEKSVRDLLGCVDKHILEDLVE 251 (491)
T ss_pred HHHHHHHHH---cCCCHHHHHHHHHHHHHhc---CCCCCHHHHHHHHccCCHHHHHHHHH
Confidence 444444432 3599999999999887663 35799999988766554444433333
No 28
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.76 E-value=1.1e-16 Score=138.27 Aligned_cols=214 Identities=17% Similarity=0.280 Sum_probs=136.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCC------CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEAC------NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCA 101 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~------~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~ 101 (418)
+.++|.++...... .+...+.++. +.++|+|||||||||+++++++.+.. +..+.+++...
T Consensus 121 ddViGqEeAK~kcr-li~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k------vp~l~vkat~l------ 187 (368)
T COG1223 121 DDVIGQEEAKRKCR-LIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK------VPLLLVKATEL------ 187 (368)
T ss_pred hhhhchHHHHHHHH-HHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC------CceEEechHHH------
Confidence 45788887655433 3333344443 88999999999999999999987754 33455553221
Q ss_pred HHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--c-------hhHHHHHHhhhcc-
Q 014789 102 FKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--K-------QRLLYSLLDAMQS- 171 (418)
Q Consensus 102 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--~-------~~~L~~l~~~~~~- 171 (418)
+ -..++. .......+.+...+ ..|+|++|||+|.+.-. - .+++..|+.....
T Consensus 188 i---GehVGd-----------gar~Ihely~rA~~----~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi 249 (368)
T COG1223 188 I---GEHVGD-----------GARRIHELYERARK----AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGI 249 (368)
T ss_pred H---HHHhhh-----------HHHHHHHHHHHHHh----cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCc
Confidence 1 111211 11222333333333 36999999999988653 1 2455555544332
Q ss_pred -CCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHHHHhCCh
Q 014789 172 -VTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS-LPVDSSLPHAYAVEFNKKIKNILADG 249 (418)
Q Consensus 172 -~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (418)
.+..++.|++||+ ++.|+++++|||. ..|.|.-++.+|...|++..++ +|.+.. .
T Consensus 250 ~eneGVvtIaaTN~---p~~LD~aiRsRFE-eEIEF~LP~~eEr~~ile~y~k~~Plpv~-------------------~ 306 (368)
T COG1223 250 KENEGVVTIAATNR---PELLDPAIRSRFE-EEIEFKLPNDEERLEILEYYAKKFPLPVD-------------------A 306 (368)
T ss_pred ccCCceEEEeecCC---hhhcCHHHHhhhh-heeeeeCCChHHHHHHHHHHHHhCCCccc-------------------c
Confidence 3467999999999 6789999999997 5799999999999999999876 332211 1
Q ss_pred hHHHHHHHHhcccc-CHHHHHHHHHHHhhcc-cccCCCCChhhHHHHHhc
Q 014789 250 RFKEIVNTLVNLDS-TVNHLLRFLFLAVSYM-DLESGFLSFENFKTALSN 297 (418)
Q Consensus 250 ~~~~~~~~~~~~~g-d~r~~~~~l~~a~~~a-~~~~~~it~~~v~~a~~~ 297 (418)
.+..+.++.-+.+| |+.. .+++.|+..| .++.+.|+.+|+..|+++
T Consensus 307 ~~~~~~~~t~g~SgRdike--kvlK~aLh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 307 DLRYLAAKTKGMSGRDIKE--KVLKTALHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred CHHHHHHHhCCCCchhHHH--HHHHHHHHHHHHhchhhhhHHHHHHHHHh
Confidence 23344444434443 3221 2333333222 238889999999999886
No 29
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.76 E-value=6.7e-18 Score=152.25 Aligned_cols=218 Identities=18% Similarity=0.247 Sum_probs=153.5
Q ss_pred CCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHH
Q 014789 30 SDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQL 109 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 109 (418)
.+|.+.-+.+ ...|+..+..+.-++++++||||||||++++.++..-.... +.+|.+++....+. -++.++++.
T Consensus 140 yvGQ~hlv~q-~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S---yrfvelSAt~a~t~--dvR~ife~a 213 (554)
T KOG2028|consen 140 YVGQSHLVGQ-DGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS---YRFVELSATNAKTN--DVRDIFEQA 213 (554)
T ss_pred hcchhhhcCc-chHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc---eEEEEEeccccchH--HHHHHHHHH
Confidence 5677766666 67788888989999999999999999999999988765543 77888877665532 456666554
Q ss_pred HHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHH
Q 014789 110 CMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQ 189 (418)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~ 189 (418)
.... . ..++..||||||++.|-...|+.+.-. ...+.+++||+|+..+ ..
T Consensus 214 q~~~---------------------~---l~krkTilFiDEiHRFNksQQD~fLP~-----VE~G~I~lIGATTENP-SF 263 (554)
T KOG2028|consen 214 QNEK---------------------S---LTKRKTILFIDEIHRFNKSQQDTFLPH-----VENGDITLIGATTENP-SF 263 (554)
T ss_pred HHHH---------------------h---hhcceeEEEeHHhhhhhhhhhhcccce-----eccCceEEEecccCCC-cc
Confidence 3221 0 123678999999999987777665433 3358899999998765 45
Q ss_pred HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCC-----CCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccC
Q 014789 190 LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVD-----SSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDST 264 (418)
Q Consensus 190 ~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd 264 (418)
.|...+.||| +.+.+.+++.+++..||.+.+..-.+ .+++.+. .+-++.+.+.+..+ ..||
T Consensus 264 qln~aLlSRC--~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s----------~~ve~siidyla~l--sdGD 329 (554)
T KOG2028|consen 264 QLNAALLSRC--RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSS----------MFVEDSIIDYLAYL--SDGD 329 (554)
T ss_pred chhHHHHhcc--ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcc----------hhhhHHHHHHHHHh--cCch
Confidence 6788999999 68999999999999999986541111 1222110 11233344455444 3599
Q ss_pred HHHHHHHHHHHhhcccc-----cCCCCChhhHHHHHhc
Q 014789 265 VNHLLRFLFLAVSYMDL-----ESGFLSFENFKTALSN 297 (418)
Q Consensus 265 ~r~~~~~l~~a~~~a~~-----~~~~it~~~v~~a~~~ 297 (418)
+|.+++.+.-++..+.. ....++.+||++++..
T Consensus 330 aR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 330 ARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred HHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 99999998877544332 3347899999988764
No 30
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=4.2e-17 Score=157.93 Aligned_cols=220 Identities=17% Similarity=0.254 Sum_probs=151.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcC---------CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEA---------CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~---------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.+-|.|+...+|.+.+.-.++.+ ++..+|+|||||||||+++++++.+-... ++.+.|...-+.
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n------FlsvkgpEL~sk 507 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN------FLSVKGPELFSK 507 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC------eeeccCHHHHHH
Confidence 456778888888887766655442 47899999999999999999999876543 355555332111
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc--------hhHHHHHHhhhc
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK--------QRLLYSLLDAMQ 170 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~--------~~~L~~l~~~~~ 170 (418)
.. +..+.....+++..++. .|.||++||+|.+...+ ..+|.+|+..+.
T Consensus 508 ----------~v----------GeSEr~ir~iF~kAR~~----aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmD 563 (693)
T KOG0730|consen 508 ----------YV----------GESERAIREVFRKARQV----APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMD 563 (693)
T ss_pred ----------hc----------CchHHHHHHHHHHHhhc----CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcc
Confidence 10 11122333344433333 57999999999998752 467888887665
Q ss_pred c--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHHHH
Q 014789 171 S--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS-LPVDSSLPHAYAVEFNKKIKNI 245 (418)
Q Consensus 171 ~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~-~~~~~~~~~~~~~~~~~~~~~~ 245 (418)
. ...++.|||+||+ ++.+++++.+ ||. +.|++++++.+...+|++.+++ .+...
T Consensus 564 G~e~~k~V~ViAATNR---pd~ID~ALlRPGRlD-~iiyVplPD~~aR~~Ilk~~~kkmp~~~----------------- 622 (693)
T KOG0730|consen 564 GLEALKNVLVIAATNR---PDMIDPALLRPGRLD-RIIYVPLPDLEARLEILKQCAKKMPFSE----------------- 622 (693)
T ss_pred cccccCcEEEEeccCC---hhhcCHHHcCCcccc-eeEeecCccHHHHHHHHHHHHhcCCCCc-----------------
Confidence 4 3468999999999 6788999988 887 6899999999999999999986 22211
Q ss_pred hCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccc---cCCCCChhhHHHHHhccCCCc
Q 014789 246 LADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDL---ESGFLSFENFKTALSNSHRQP 302 (418)
Q Consensus 246 ~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~---~~~~it~~~v~~a~~~~~~~~ 302 (418)
+-++.+++....+++| ..+..+|+.|...|-. ....|+.+||.+|++...+..
T Consensus 623 --~vdl~~La~~T~g~SG--Ael~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 623 --DVDLEELAQATEGYSG--AEIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSL 678 (693)
T ss_pred --cccHHHHHHHhccCCh--HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccC
Confidence 1134555555555555 4455667766555422 566788999999988765543
No 31
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=2.1e-16 Score=157.47 Aligned_cols=221 Identities=15% Similarity=0.199 Sum_probs=143.5
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCC--------------------CeE
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPD--------------------TIS 86 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~--------------------~~~ 86 (418)
+.++|.+...+.|..++. .+. ++.++++||+|+|||++++.+++.+....+. ...
T Consensus 13 ~eivGq~~i~~~L~~~i~----~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d 88 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALD----AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID 88 (584)
T ss_pred HHhcCcHHHHHHHHHHHH----cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce
Confidence 358899988888777763 444 4456899999999999999999988754211 112
Q ss_pred EEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHH
Q 014789 87 VIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLL 166 (418)
Q Consensus 87 ~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~ 166 (418)
++.+++.... +.++ .+.+.+.+......+...|+||||+|.|....++.|...+
T Consensus 89 vieidaas~~-------------------------gvd~-iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~L 142 (584)
T PRK14952 89 VVELDAASHG-------------------------GVDD-TRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIV 142 (584)
T ss_pred EEEecccccc-------------------------CHHH-HHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHH
Confidence 2222221111 1222 1222333322222346789999999999876666665555
Q ss_pred hhhccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHh
Q 014789 167 DAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNIL 246 (418)
Q Consensus 167 ~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 246 (418)
+. ....+++|++++. ...+.+.++||+ ..+.|.+++.+++.+.+...+... +. .+
T Consensus 143 EE---pp~~~~fIL~tte---~~kll~TI~SRc--~~~~F~~l~~~~i~~~L~~i~~~e---gi--------------~i 197 (584)
T PRK14952 143 EE---PPEHLIFIFATTE---PEKVLPTIRSRT--HHYPFRLLPPRTMRALIARICEQE---GV--------------VV 197 (584)
T ss_pred hc---CCCCeEEEEEeCC---hHhhHHHHHHhc--eEEEeeCCCHHHHHHHHHHHHHHc---CC--------------CC
Confidence 44 4468889988866 468888999998 679999999999999998876411 10 12
Q ss_pred CChhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhc
Q 014789 247 ADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIK 308 (418)
Q Consensus 247 ~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~ 308 (418)
+++++ .++... ..||+|.+++++...+... +...||.+++...+.......+.+.+.
T Consensus 198 ~~~al-~~Ia~~--s~GdlR~aln~Ldql~~~~--~~~~It~~~v~~llg~~~~~~i~~lv~ 254 (584)
T PRK14952 198 DDAVY-PLVIRA--GGGSPRDTLSVLDQLLAGA--ADTHVTYQRALGLLGATDVALIDDAVD 254 (584)
T ss_pred CHHHH-HHHHHH--cCCCHHHHHHHHHHHHhcc--CCCCcCHHHHHHHHCCCCHHHHHHHHH
Confidence 33333 333322 3599999999999876653 256799888887766544333333333
No 32
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=1.5e-16 Score=158.60 Aligned_cols=241 Identities=13% Similarity=0.153 Sum_probs=145.9
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++|.+...+.|...+.. +.-++.++|+||+|+|||++++.+++.+....+. ....|..+.. .+.+...
T Consensus 17 dIIGQe~vv~~L~~ai~~---~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~----~~~pCg~C~s----Cr~i~~g 85 (709)
T PRK08691 17 DLVGQEHVVKALQNALDE---GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQ----HGEPCGVCQS----CTQIDAG 85 (709)
T ss_pred HHcCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCC----CCCCCcccHH----HHHHhcc
Confidence 589999999888877643 2336678999999999999999999988754311 0011111110 0000000
Q ss_pred HHHhh-hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCCh
Q 014789 109 LCMEH-QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDA 187 (418)
Q Consensus 109 l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~ 187 (418)
-.... .+......+.+. .+.+.+........+++.|+||||+|.|....++.|...++ .....+.+|++++.
T Consensus 86 ~~~DvlEidaAs~~gVd~-IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLE---EPp~~v~fILaTtd--- 158 (709)
T PRK08691 86 RYVDLLEIDAASNTGIDN-IREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLE---EPPEHVKFILATTD--- 158 (709)
T ss_pred CccceEEEeccccCCHHH-HHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHH---hCCCCcEEEEEeCC---
Confidence 00000 000001111111 22222222222223457899999999987644444444444 33466788888876
Q ss_pred HHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHH
Q 014789 188 DQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNH 267 (418)
Q Consensus 188 ~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~ 267 (418)
...+.+.++||| ..+.|.+++.+++.++|...+.- .++ .++++++..+++ . ..||+|.
T Consensus 159 ~~kL~~TIrSRC--~~f~f~~Ls~eeI~~~L~~Il~k---Egi--------------~id~eAL~~Ia~-~--A~GslRd 216 (709)
T PRK08691 159 PHKVPVTVLSRC--LQFVLRNMTAQQVADHLAHVLDS---EKI--------------AYEPPALQLLGR-A--AAGSMRD 216 (709)
T ss_pred ccccchHHHHHH--hhhhcCCCCHHHHHHHHHHHHHH---cCC--------------CcCHHHHHHHHH-H--hCCCHHH
Confidence 445667888999 56899999999999999988751 111 123444444443 2 2599999
Q ss_pred HHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCCCh
Q 014789 268 LLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDCSI 312 (418)
Q Consensus 268 ~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~ 312 (418)
+++++..++.. +...|+.++|...+.....+.+.+.+..|..
T Consensus 217 AlnLLDqaia~---g~g~It~e~V~~lLG~~d~~~If~LldAL~~ 258 (709)
T PRK08691 217 ALSLLDQAIAL---GSGKVAENDVRQMIGAVDKQYLYELLTGIIN 258 (709)
T ss_pred HHHHHHHHHHh---cCCCcCHHHHHHHHcccCHHHHHHHHHHHHc
Confidence 99999888766 4567999999988877665555555444443
No 33
>PLN03025 replication factor C subunit; Provisional
Probab=99.74 E-value=4.2e-16 Score=146.81 Aligned_cols=221 Identities=16% Similarity=0.192 Sum_probs=141.7
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++|.++.++.|..+ +.++..++++|+||||||||++++.+++.+..... ...++.+|+...... ..++++.+.
T Consensus 14 ~~~g~~~~~~~L~~~----~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-~~~~~eln~sd~~~~-~~vr~~i~~ 87 (319)
T PLN03025 14 DIVGNEDAVSRLQVI----ARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-KEAVLELNASDDRGI-DVVRNKIKM 87 (319)
T ss_pred HhcCcHHHHHHHHHH----HhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-ccceeeecccccccH-HHHHHHHHH
Confidence 478888877776655 45556678999999999999999999999854321 123556666443321 123333322
Q ss_pred HHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChH
Q 014789 109 LCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDAD 188 (418)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~ 188 (418)
+.... . ....+.+.|++|||+|.+....|..|...++.+. ....+|.++|. .
T Consensus 88 ~~~~~--------------------~--~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~---~~t~~il~~n~---~ 139 (319)
T PLN03025 88 FAQKK--------------------V--TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYS---NTTRFALACNT---S 139 (319)
T ss_pred HHhcc--------------------c--cCCCCCeEEEEEechhhcCHHHHHHHHHHHhccc---CCceEEEEeCC---c
Confidence 21110 0 0011357899999999998878888877766432 33456667765 3
Q ss_pred HHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHH
Q 014789 189 QLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHL 268 (418)
Q Consensus 189 ~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~ 268 (418)
..+.+.++||+ ..+.|+|++.+++.+.+...+.- +++ .++++++..++.. ..||+|.+
T Consensus 140 ~~i~~~L~SRc--~~i~f~~l~~~~l~~~L~~i~~~---egi--------------~i~~~~l~~i~~~---~~gDlR~a 197 (319)
T PLN03025 140 SKIIEPIQSRC--AIVRFSRLSDQEILGRLMKVVEA---EKV--------------PYVPEGLEAIIFT---ADGDMRQA 197 (319)
T ss_pred cccchhHHHhh--hcccCCCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHHHHHH---cCCCHHHH
Confidence 45678899998 57899999999999999887641 111 1234444444432 46999999
Q ss_pred HHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcC
Q 014789 269 LRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKD 309 (418)
Q Consensus 269 ~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~ 309 (418)
++.+..+. . +...|+.++|.+.......+.....+..
T Consensus 198 ln~Lq~~~-~---~~~~i~~~~v~~~~~~~~~~~i~~~i~~ 234 (319)
T PLN03025 198 LNNLQATH-S---GFGFVNQENVFKVCDQPHPLHVKNIVRN 234 (319)
T ss_pred HHHHHHHH-h---cCCCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 99997432 1 3457999888776554433333344433
No 34
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=6e-16 Score=155.01 Aligned_cols=244 Identities=16% Similarity=0.208 Sum_probs=148.4
Q ss_pred hcCCCCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 19 LCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 19 ~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
-+.|... +.++|++...+.|...+.. +..++.+|++||+|||||++++.+++.+....+... -.|..+.
T Consensus 9 k~rP~~f--~~viGq~~v~~~L~~~i~~---~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~----~pC~~C~-- 77 (559)
T PRK05563 9 KWRPQTF--EDVVGQEHITKTLKNAIKQ---GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG----EPCNECE-- 77 (559)
T ss_pred HhCCCcH--HhccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC----CCCCccH--
Confidence 3444433 4689999988877776543 233566788999999999999999998875432100 0122211
Q ss_pred HHHHHHHHHHHHHhh-hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEE
Q 014789 99 CCAFKEIARQLCMEH-QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAV 177 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~ 177 (418)
..+.+........ ........+.+ ....+.+.+......+.+.|+||||+|.|....++ .|+...+..+..++
T Consensus 78 --~C~~i~~g~~~dv~eidaas~~~vd-~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~n---aLLKtLEepp~~~i 151 (559)
T PRK05563 78 --ICKAITNGSLMDVIEIDAASNNGVD-EIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFN---ALLKTLEEPPAHVI 151 (559)
T ss_pred --HHHHHhcCCCCCeEEeeccccCCHH-HHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHH---HHHHHhcCCCCCeE
Confidence 1111111100000 00000111222 22333444444344567899999999999764444 44444444556788
Q ss_pred EEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHH
Q 014789 178 VIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNT 257 (418)
Q Consensus 178 lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (418)
+|++++. +..+.+.++||+ ..+.|.|++.+++.+.+...+.- .++ .++++++..++.
T Consensus 152 fIlatt~---~~ki~~tI~SRc--~~~~f~~~~~~ei~~~L~~i~~~---egi--------------~i~~~al~~ia~- 208 (559)
T PRK05563 152 FILATTE---PHKIPATILSRC--QRFDFKRISVEDIVERLKYILDK---EGI--------------EYEDEALRLIAR- 208 (559)
T ss_pred EEEEeCC---hhhCcHHHHhHh--eEEecCCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHHHHH-
Confidence 8888765 467788899999 57899999999999999887640 111 123333333333
Q ss_pred HhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhh
Q 014789 258 LVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECI 307 (418)
Q Consensus 258 ~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l 307 (418)
. ..||+|.+++.+..++.. +...||.++|.+++.........+.+
T Consensus 209 ~--s~G~~R~al~~Ldq~~~~---~~~~It~~~V~~vlg~~~~~~i~~l~ 253 (559)
T PRK05563 209 A--AEGGMRDALSILDQAISF---GDGKVTYEDALEVTGSVSQEALDDLV 253 (559)
T ss_pred H--cCCCHHHHHHHHHHHHHh---ccCCCCHHHHHHHhCCCCHHHHHHHH
Confidence 2 359999999999988766 34579999888776655443333333
No 35
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=4.3e-16 Score=155.71 Aligned_cols=245 Identities=16% Similarity=0.173 Sum_probs=147.7
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEE-EEccccCCChHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVI-KLNGLLHSDDCCAFKEI 105 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v-~in~~~~~~~~~~~~~i 105 (418)
+.++|.+...+.|.+.+ ..+. ++.+|++||+|+|||++++.+++.+....+....-+ .-.|..+. ..+.|
T Consensus 16 ~dviGQe~vv~~L~~~l----~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~----~C~~i 87 (618)
T PRK14951 16 SEMVGQEHVVQALTNAL----TQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ----ACRDI 87 (618)
T ss_pred HHhcCcHHHHHHHHHHH----HcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH----HHHHH
Confidence 35789888777666655 4444 556689999999999999999999875421100000 00111111 11111
Q ss_pred HHHHHHhh-hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 106 ARQLCMEH-QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 106 ~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
...-.... ........+.++ .+.+.+.+......++..|+||||+|.|....++.|.. ..+.....+.+|++|++
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~-iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLK---tLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDE-VQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLK---TLEEPPEYLKFVLATTD 163 (618)
T ss_pred HcCCCCceeecCcccccCHHH-HHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHH---hcccCCCCeEEEEEECC
Confidence 11000000 000000112222 22333333333334568899999999998765555444 44444467788888866
Q ss_pred CChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccC
Q 014789 185 LDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDST 264 (418)
Q Consensus 185 ~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd 264 (418)
...+.+.++||+ ..+.|.+++.+++.+.+...+.- .++ .++++++..+++ . ..||
T Consensus 164 ---~~kil~TIlSRc--~~~~f~~Ls~eei~~~L~~i~~~---egi--------------~ie~~AL~~La~-~--s~Gs 218 (618)
T PRK14951 164 ---PQKVPVTVLSRC--LQFNLRPMAPETVLEHLTQVLAA---ENV--------------PAEPQALRLLAR-A--ARGS 218 (618)
T ss_pred ---chhhhHHHHHhc--eeeecCCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHHHHH-H--cCCC
Confidence 445667799999 67999999999999999987641 111 123333333333 2 3599
Q ss_pred HHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCCCh
Q 014789 265 VNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDCSI 312 (418)
Q Consensus 265 ~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~ 312 (418)
+|.+++++.+++.. +...||.++|.+.+.....+.+...+..|..
T Consensus 219 lR~al~lLdq~ia~---~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~ 263 (618)
T PRK14951 219 MRDALSLTDQAIAF---GSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ 263 (618)
T ss_pred HHHHHHHHHHHHHh---cCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 99999999887765 4567999999988877665555555554443
No 36
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=5.2e-16 Score=160.30 Aligned_cols=238 Identities=16% Similarity=0.108 Sum_probs=142.5
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++|.+...+.|...+.. +.-++.+||+||+|+|||++++.+++.|.+..+.... .|..+.+ .+.+...
T Consensus 16 eiiGqe~v~~~L~~~i~~---~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~----pCg~C~s----C~~~~~g 84 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDS---GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTST----PCGECDS----CVALAPG 84 (824)
T ss_pred HhcCcHHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC----CCcccHH----HHHHHcC
Confidence 588999988887777642 2335557899999999999999999998754311000 1111110 1111100
Q ss_pred HHHhhhc-ccc--cCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCC
Q 014789 109 LCMEHQL-LFS--KMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRL 185 (418)
Q Consensus 109 l~~~~~~-~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~ 185 (418)
-.....+ .+. ...+.++.. .+.+.+......+++.|+||||+|.|....++.|..+++. ....++||++++.
T Consensus 85 ~~~~~dv~eidaas~~~Vd~iR-~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE---pP~~~~fIl~tt~- 159 (824)
T PRK07764 85 GPGSLDVTEIDAASHGGVDDAR-ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE---PPEHLKFIFATTE- 159 (824)
T ss_pred CCCCCcEEEecccccCCHHHHH-HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC---CCCCeEEEEEeCC-
Confidence 0000000 000 001122222 2222222222345788999999999988666666666554 3467888888866
Q ss_pred ChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCH
Q 014789 186 DADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTV 265 (418)
Q Consensus 186 ~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 265 (418)
.+.+.+.++||+ ..+.|.+++.+++.++|...+.. +++ .++++.+..+++ . ..||+
T Consensus 160 --~~kLl~TIrSRc--~~v~F~~l~~~~l~~~L~~il~~---EGv--------------~id~eal~lLa~-~--sgGdl 215 (824)
T PRK07764 160 --PDKVIGTIRSRT--HHYPFRLVPPEVMRGYLERICAQ---EGV--------------PVEPGVLPLVIR-A--GGGSV 215 (824)
T ss_pred --hhhhhHHHHhhe--eEEEeeCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHHHHH-H--cCCCH
Confidence 446888999999 67999999999999999887641 011 112333333332 2 35899
Q ss_pred HHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhc
Q 014789 266 NHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIK 308 (418)
Q Consensus 266 r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~ 308 (418)
|.+++.+.+.+..+ +...||.+++...+.......+.+.+.
T Consensus 216 R~Al~eLEKLia~~--~~~~IT~e~V~allg~~~~~~I~~lid 256 (824)
T PRK07764 216 RDSLSVLDQLLAGA--GPEGVTYERAVALLGVTDSALIDEAVD 256 (824)
T ss_pred HHHHHHHHHHHhhc--CCCCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 99999998866442 345699888887665544333333333
No 37
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=6.3e-16 Score=152.60 Aligned_cols=218 Identities=15% Similarity=0.195 Sum_probs=140.6
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCC--C----------------eEEEE
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPD--T----------------ISVIK 89 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~--~----------------~~~v~ 89 (418)
.++|.+..++.|...+ ..+. ++.++++||+|+|||++++.+++.+....+. . ..+++
T Consensus 17 diiGq~~~v~~L~~~i----~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 17 EVAGQQHALNSLVHAL----ETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred HhcCcHHHHHHHHHHH----HcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 5789999888777665 3434 4557899999999999999999988753210 0 11122
Q ss_pred EccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhh
Q 014789 90 LNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAM 169 (418)
Q Consensus 90 in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~ 169 (418)
+++... .+.++ .+.+.+.+......+...|+||||+|.+....++.|...++.
T Consensus 93 idaas~-------------------------~gvd~-ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe- 145 (546)
T PRK14957 93 IDAASR-------------------------TGVEE-TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE- 145 (546)
T ss_pred eecccc-------------------------cCHHH-HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc-
Confidence 221110 11111 222333333222334678999999999987666666666554
Q ss_pred ccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCCh
Q 014789 170 QSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADG 249 (418)
Q Consensus 170 ~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (418)
....+.+|++|+. ...+.+.++||+ ..+.|.|++.+++.+.+...+.- .++ .++++
T Consensus 146 --pp~~v~fIL~Ttd---~~kil~tI~SRc--~~~~f~~Ls~~eI~~~L~~il~~---egi--------------~~e~~ 201 (546)
T PRK14957 146 --PPEYVKFILATTD---YHKIPVTILSRC--IQLHLKHISQADIKDQLKIILAK---ENI--------------NSDEQ 201 (546)
T ss_pred --CCCCceEEEEECC---hhhhhhhHHHhe--eeEEeCCCCHHHHHHHHHHHHHH---cCC--------------CCCHH
Confidence 3467788888866 456667799999 67999999999999999987641 011 12233
Q ss_pred hHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhh
Q 014789 250 RFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECI 307 (418)
Q Consensus 250 ~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l 307 (418)
++.. +... ..||+|.+++++..++... ...|+.++|.+++.....+...+.+
T Consensus 202 Al~~-Ia~~--s~GdlR~alnlLek~i~~~---~~~It~~~V~~~l~~~~~~~v~~ll 253 (546)
T PRK14957 202 SLEY-IAYH--AKGSLRDALSLLDQAISFC---GGELKQAQIKQMLGIIDSEEVYSII 253 (546)
T ss_pred HHHH-HHHH--cCCCHHHHHHHHHHHHHhc---cCCCCHHHHHHHHccCCHHHHHHHH
Confidence 3333 3333 3599999999999887663 2579998888876654433333333
No 38
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.72 E-value=2.4e-16 Score=151.92 Aligned_cols=216 Identities=18% Similarity=0.218 Sum_probs=141.1
Q ss_pred CCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
.+.|.++++++|.+.+...+.. ..+.+++|+||||||||+++++++..+... ++.+.+......
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~------fi~V~~seL~~k- 256 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT------FLRVVGSELIQK- 256 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC------EEEEecchhhhh-
Confidence 4689999999999998754443 246789999999999999999999987532 355554332110
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc-----------hhHHHHHHhh
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK-----------QRLLYSLLDA 168 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~-----------~~~L~~l~~~ 168 (418)
. ++ ........++..... ..|.||+|||+|.+.... +..+..++..
T Consensus 257 -----~---~G-----------e~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~ 313 (438)
T PTZ00361 257 -----Y---LG-----------DGPKLVRELFRVAEE----NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQ 313 (438)
T ss_pred -----h---cc-----------hHHHHHHHHHHHHHh----CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHH
Confidence 0 00 011122233333322 368999999999987531 2344455544
Q ss_pred hcc--CCCcEEEEEeccCCChHHHHHHHhh--cccCceEEEecCCCHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHH
Q 014789 169 MQS--VTSQAVVIGVSCRLDADQLLEKRVR--SRFSHRKLLFLPPSKEDMQRLLEHILS-LPVDSSLPHAYAVEFNKKIK 243 (418)
Q Consensus 169 ~~~--~~~~~~lI~~s~~~~~~~~l~~~v~--sr~~~~~i~~~~~~~~e~~~il~~~l~-~~~~~~~~~~~~~~~~~~~~ 243 (418)
... ...++.||++||. .+.+++.+. +||. +.|.|++|+.++..+|++.++. ....
T Consensus 314 Ldg~~~~~~V~VI~ATNr---~d~LDpaLlRpGRfd-~~I~~~~Pd~~~R~~Il~~~~~k~~l~---------------- 373 (438)
T PTZ00361 314 LDGFDSRGDVKVIMATNR---IESLDPALIRPGRID-RKIEFPNPDEKTKRRIFEIHTSKMTLA---------------- 373 (438)
T ss_pred HhhhcccCCeEEEEecCC---hHHhhHHhccCCeeE-EEEEeCCCCHHHHHHHHHHHHhcCCCC----------------
Confidence 332 2357899999997 567888876 4786 6799999999999999998764 1111
Q ss_pred HHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccC
Q 014789 244 NILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSH 299 (418)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~ 299 (418)
.+-.+..++....+.+| ..+..+|..|...|. .+...|+.+||.+|+..+.
T Consensus 374 ---~dvdl~~la~~t~g~sg--AdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 374 ---EDVDLEEFIMAKDELSG--ADIKAICTEAGLLALRERRMKVTQADFRKAKEKVL 425 (438)
T ss_pred ---cCcCHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHH
Confidence 11223444544434333 334456777766654 3667899999999998763
No 39
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.72 E-value=1.3e-15 Score=148.37 Aligned_cols=207 Identities=19% Similarity=0.226 Sum_probs=138.1
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
+.++|++..+.. ...+...+..+..++++|+||||||||++++.+++.+.. .++.+++..... ..++.+..
T Consensus 12 ~d~vGq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~------~~~~l~a~~~~~--~~ir~ii~ 82 (413)
T PRK13342 12 DEVVGQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDA------PFEALSAVTSGV--KDLREVIE 82 (413)
T ss_pred HHhcCcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCC------CEEEEecccccH--HHHHHHHH
Confidence 357888877665 233444456667789999999999999999999887643 346666643321 12233332
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCCh
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDA 187 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~ 187 (418)
.... .. ..+...||+|||+|.+....|+.|...++. ..+++|++++...
T Consensus 83 ~~~~---------------------~~----~~g~~~vL~IDEi~~l~~~~q~~LL~~le~-----~~iilI~att~n~- 131 (413)
T PRK13342 83 EARQ---------------------RR----SAGRRTILFIDEIHRFNKAQQDALLPHVED-----GTITLIGATTENP- 131 (413)
T ss_pred HHHH---------------------hh----hcCCceEEEEechhhhCHHHHHHHHHHhhc-----CcEEEEEeCCCCh-
Confidence 2211 01 123578999999999987777777665542 5678888776533
Q ss_pred HHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHH
Q 014789 188 DQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNH 267 (418)
Q Consensus 188 ~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~ 267 (418)
...+.+.+.||+ ..+.|+|++.+++..++...+..... ++ ..++++.+..+ .+. ..||+|.
T Consensus 132 ~~~l~~aL~SR~--~~~~~~~ls~e~i~~lL~~~l~~~~~-~~-------------i~i~~~al~~l-~~~--s~Gd~R~ 192 (413)
T PRK13342 132 SFEVNPALLSRA--QVFELKPLSEEDIEQLLKRALEDKER-GL-------------VELDDEALDAL-ARL--ANGDARR 192 (413)
T ss_pred hhhccHHHhccc--eeeEeCCCCHHHHHHHHHHHHHHhhc-CC-------------CCCCHHHHHHH-HHh--CCCCHHH
Confidence 456789999999 57899999999999999987641000 00 01233333333 333 3699999
Q ss_pred HHHHHHHHhhcccccCCCCChhhHHHHHhc
Q 014789 268 LLRFLFLAVSYMDLESGFLSFENFKTALSN 297 (418)
Q Consensus 268 ~~~~l~~a~~~a~~~~~~it~~~v~~a~~~ 297 (418)
+++++..+... ...|+.+++.++...
T Consensus 193 aln~Le~~~~~----~~~It~~~v~~~~~~ 218 (413)
T PRK13342 193 ALNLLELAALG----VDSITLELLEEALQK 218 (413)
T ss_pred HHHHHHHHHHc----cCCCCHHHHHHHHhh
Confidence 99999886654 457999999887764
No 40
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.72 E-value=5.3e-16 Score=161.13 Aligned_cols=230 Identities=13% Similarity=0.161 Sum_probs=148.8
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhC-CC---CeEEEEEccccCCChHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEY-PD---TISVIKLNGLLHSDDCCAFKE 104 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~-~~---~~~~v~in~~~~~~~~~~~~~ 104 (418)
.++||+++++.+...| .....++++|+||||||||++++.+++.+.... +. +..++.+++....
T Consensus 183 ~~igr~~ei~~~~~~L----~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~-------- 250 (731)
T TIGR02639 183 PLIGREDELERTIQVL----CRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLL-------- 250 (731)
T ss_pred cccCcHHHHHHHHHHH----hcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHh--------
Confidence 4899999999877665 334677899999999999999999999886432 11 2344555532111
Q ss_pred HHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc-----hhHHHHHHhhhccCCCcEEEE
Q 014789 105 IARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK-----QRLLYSLLDAMQSVTSQAVVI 179 (418)
Q Consensus 105 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~-----~~~L~~l~~~~~~~~~~~~lI 179 (418)
... ...+.+++.+..+++.+.. ..+.||||||+|.+...+ ..-..+++. +......+.+|
T Consensus 251 --a~~--------~~~g~~e~~l~~i~~~~~~----~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~-~~l~~g~i~~I 315 (731)
T TIGR02639 251 --AGT--------KYRGDFEERLKAVVSEIEK----EPNAILFIDEIHTIVGAGATSGGSMDASNLLK-PALSSGKLRCI 315 (731)
T ss_pred --hhc--------cccchHHHHHHHHHHHHhc----cCCeEEEEecHHHHhccCCCCCccHHHHHHHH-HHHhCCCeEEE
Confidence 000 0001233333444443332 247899999999997531 112334433 22234789999
Q ss_pred EeccCCChHH--HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHH
Q 014789 180 GVSCRLDADQ--LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNT 257 (418)
Q Consensus 180 ~~s~~~~~~~--~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (418)
|+||..++.. ..++.+.+||. .|.+++++.++..+|++.... .|.......++++++..++..
T Consensus 316 gaTt~~e~~~~~~~d~al~rRf~--~i~v~~p~~~~~~~il~~~~~-------------~~e~~~~v~i~~~al~~~~~l 380 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSRRFQ--KIDVGEPSIEETVKILKGLKE-------------KYEEFHHVKYSDEALEAAVEL 380 (731)
T ss_pred EecCHHHHHHHhhhhHHHHHhCc--eEEeCCCCHHHHHHHHHHHHH-------------HHHhccCcccCHHHHHHHHHh
Confidence 9999865533 35789999994 699999999999999997653 111111123456666666555
Q ss_pred HhccccC---HHHHHHHHHHHhhcccc-----cCCCCChhhHHHHHhccCC
Q 014789 258 LVNLDST---VNHLLRFLFLAVSYMDL-----ESGFLSFENFKTALSNSHR 300 (418)
Q Consensus 258 ~~~~~gd---~r~~~~~l~~a~~~a~~-----~~~~it~~~v~~a~~~~~~ 300 (418)
...+-++ ++++++++..|.+.+.. ....|+.++|.+++..+..
T Consensus 381 s~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tg 431 (731)
T TIGR02639 381 SARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAH 431 (731)
T ss_pred hhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhC
Confidence 4444444 88899999888764321 2345999999998887653
No 41
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.71 E-value=3.7e-16 Score=143.02 Aligned_cols=205 Identities=15% Similarity=0.099 Sum_probs=127.0
Q ss_pred CCCChhhhHHHHHHHHHHHHh-----------cCCCceEEEECCCCCchHHHHHHHHHHHhhhCC-CCeEEEEEccccCC
Q 014789 29 LSDSPDSNYSKLKFLVSSSVT-----------EACNNSILLLGPRGSGKIAVLELILTDLLLEYP-DTISVIKLNGLLHS 96 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~-----------~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~-~~~~~v~in~~~~~ 96 (418)
.++|.++..++|.+....... .+...+++|+||||||||++++.+++.+..... ....+++++|....
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~ 86 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLV 86 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhh
Confidence 478888887777765433211 123568999999999999999999998754321 11234555553211
Q ss_pred ChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----chhHHHHHHhhhcc
Q 014789 97 DDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----KQRLLYSLLDAMQS 171 (418)
Q Consensus 97 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----~~~~L~~l~~~~~~ 171 (418)
.... +.. ...+.+.+... .+.||+|||+|.|... ..+.+..|++..+.
T Consensus 87 ------~~~~--------------g~~---~~~~~~~~~~a----~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~ 139 (261)
T TIGR02881 87 ------GEYI--------------GHT---AQKTREVIKKA----LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMED 139 (261)
T ss_pred ------hhhc--------------cch---HHHHHHHHHhc----cCCEEEEechhhhccCCccchHHHHHHHHHHHHhc
Confidence 1000 000 11223333332 2359999999998742 24567777776665
Q ss_pred CCCcEEEEEeccCCCh--HHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCCh
Q 014789 172 VTSQAVVIGVSCRLDA--DQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADG 249 (418)
Q Consensus 172 ~~~~~~lI~~s~~~~~--~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (418)
...++.+|+++...+. ...++|.+.|||. ..+.|++|+.+++.+|++..+.-. +.. ++++
T Consensus 140 ~~~~~~vila~~~~~~~~~~~~~p~L~sRf~-~~i~f~~~~~~el~~Il~~~~~~~-~~~----------------l~~~ 201 (261)
T TIGR02881 140 NRNEFVLILAGYSDEMDYFLSLNPGLRSRFP-ISIDFPDYTVEELMEIAERMVKER-EYK----------------LTEE 201 (261)
T ss_pred cCCCEEEEecCCcchhHHHHhcChHHHhccc-eEEEECCCCHHHHHHHHHHHHHHc-CCc----------------cCHH
Confidence 5566777777655332 2356789999995 579999999999999999887510 111 2223
Q ss_pred hHHHHH---HHH----hccccCHHHHHHHHHHHhhc
Q 014789 250 RFKEIV---NTL----VNLDSTVNHLLRFLFLAVSY 278 (418)
Q Consensus 250 ~~~~~~---~~~----~~~~gd~r~~~~~l~~a~~~ 278 (418)
++..+. ... ....||.|.+.+++..|...
T Consensus 202 a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~ 237 (261)
T TIGR02881 202 AKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRR 237 (261)
T ss_pred HHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHH
Confidence 222221 111 12358999999999887655
No 42
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.71 E-value=6.7e-16 Score=151.06 Aligned_cols=221 Identities=17% Similarity=0.163 Sum_probs=141.1
Q ss_pred CCCChhhhHHHHHHHHHHHH---h---cCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSV---T---EACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAF 102 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~---~---~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~ 102 (418)
.+.|.+...+.+........ . -..+.+++|+||||||||+++++++..+.. .++.+++....+.
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~------~~~~l~~~~l~~~---- 298 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL------PLLRLDVGKLFGG---- 298 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC------CEEEEEhHHhccc----
Confidence 46788777666665432211 1 134788999999999999999999998753 3466665321110
Q ss_pred HHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc---------chhHHHHHHhhhccCC
Q 014789 103 KEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG---------KQRLLYSLLDAMQSVT 173 (418)
Q Consensus 103 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~---------~~~~L~~l~~~~~~~~ 173 (418)
. .+..+.....++...+. ..|+||+|||+|.+... ...++..++.+.....
T Consensus 299 ------~----------vGese~~l~~~f~~A~~----~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~ 358 (489)
T CHL00195 299 ------I----------VGESESRMRQMIRIAEA----LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKK 358 (489)
T ss_pred ------c----------cChHHHHHHHHHHHHHh----cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCC
Confidence 0 01112223333333333 26899999999988653 2246666777776666
Q ss_pred CcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhH
Q 014789 174 SQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRF 251 (418)
Q Consensus 174 ~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (418)
.++.+|++||. ++.+++.+.+ ||. +.+.++.++.++..+|++..+.-.... ...+..+
T Consensus 359 ~~V~vIaTTN~---~~~Ld~allR~GRFD-~~i~v~lP~~~eR~~Il~~~l~~~~~~----------------~~~~~dl 418 (489)
T CHL00195 359 SPVFVVATANN---IDLLPLEILRKGRFD-EIFFLDLPSLEEREKIFKIHLQKFRPK----------------SWKKYDI 418 (489)
T ss_pred CceEEEEecCC---hhhCCHHHhCCCcCC-eEEEeCCcCHHHHHHHHHHHHhhcCCC----------------cccccCH
Confidence 78999999998 5577888765 887 678999999999999999887511000 0112234
Q ss_pred HHHHHHHhcccc-CHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCc
Q 014789 252 KEIVNTLVNLDS-TVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQP 302 (418)
Q Consensus 252 ~~~~~~~~~~~g-d~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~ 302 (418)
..+++...+++| |+. .++..|...|......++.+|+..|+..+.+..
T Consensus 419 ~~La~~T~GfSGAdI~---~lv~eA~~~A~~~~~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 419 KKLSKLSNKFSGAEIE---QSIIEAMYIAFYEKREFTTDDILLALKQFIPLA 467 (489)
T ss_pred HHHHhhcCCCCHHHHH---HHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCc
Confidence 455554444443 444 444555444433445799999999998887643
No 43
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.71 E-value=1.1e-15 Score=149.03 Aligned_cols=232 Identities=19% Similarity=0.240 Sum_probs=146.5
Q ss_pred hhcCCCCccCCCCCChhhhHHHHHHHHHHHHhcC--CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccC
Q 014789 18 RLCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEA--CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLH 95 (418)
Q Consensus 18 ~~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~--~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~ 95 (418)
..+++.+.+++.++|.+..+ ..........+. ..++++|+||+|+|||++++++++.+....+ ...++|+++..
T Consensus 101 ~~l~~~~tfd~fi~g~~n~~--a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~-~~~v~yi~~~~- 176 (405)
T TIGR00362 101 SPLNPKYTFDNFVVGKSNRL--AHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNP-NAKVVYVSSEK- 176 (405)
T ss_pred CCCCCCCcccccccCCcHHH--HHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCC-CCcEEEEEHHH-
Confidence 34777888865567765543 222333333332 2467999999999999999999999876532 25678887643
Q ss_pred CChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccCC
Q 014789 96 SDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVT 173 (418)
Q Consensus 96 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~ 173 (418)
+..++...+... . ...+.+.+.. .-+|+|||+|.+... .|..++.+++......
T Consensus 177 -----~~~~~~~~~~~~---------~----~~~~~~~~~~------~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~ 232 (405)
T TIGR00362 177 -----FTNDFVNALRNN---------K----MEEFKEKYRS------VDLLLIDDIQFLAGKERTQEEFFHTFNALHENG 232 (405)
T ss_pred -----HHHHHHHHHHcC---------C----HHHHHHHHHh------CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC
Confidence 233343333211 1 1122333332 348999999998765 4667777776654333
Q ss_pred CcEEEEEeccCCChHHHHHHHhhcccCc-eEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHH
Q 014789 174 SQAVVIGVSCRLDADQLLEKRVRSRFSH-RKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFK 252 (418)
Q Consensus 174 ~~~~lI~~s~~~~~~~~l~~~v~sr~~~-~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (418)
.. ++|.+.........+++++.|||.. ..+.++||+.+++.+|++.++... + ..++++.+.
T Consensus 233 ~~-iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~---~--------------~~l~~e~l~ 294 (405)
T TIGR00362 233 KQ-IVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEE---G--------------LELPDEVLE 294 (405)
T ss_pred CC-EEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHc---C--------------CCCCHHHHH
Confidence 33 3333333333344578999999973 468999999999999999997511 1 123444444
Q ss_pred HHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhcc
Q 014789 253 EIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNS 298 (418)
Q Consensus 253 ~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~ 298 (418)
.++.. ..+|+|.+...+......+......||.+.+.+++...
T Consensus 295 ~ia~~---~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 295 FIAKN---IRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHh---cCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 44433 36899987777766554544455679998888887764
No 44
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.71 E-value=1.4e-15 Score=149.89 Aligned_cols=232 Identities=19% Similarity=0.250 Sum_probs=147.1
Q ss_pred hhcCCCCccCCCCCChhhhHHHHHHHHHHHHhc--CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccC
Q 014789 18 RLCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTE--ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLH 95 (418)
Q Consensus 18 ~~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~--~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~ 95 (418)
..+++.|.+++.++|..... ..........+ ...++++|+||+|+|||++++++++.+....+ ...++|+++...
T Consensus 113 ~~l~~~~tfd~fv~g~~n~~--a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~-~~~v~yi~~~~~ 189 (450)
T PRK00149 113 SPLNPKYTFDNFVVGKSNRL--AHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNP-NAKVVYVTSEKF 189 (450)
T ss_pred cCCCCCCcccccccCCCcHH--HHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEEEHHHH
Confidence 45677777755566655432 12223333332 23467999999999999999999999887643 267788887443
Q ss_pred CChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccCC
Q 014789 96 SDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVT 173 (418)
Q Consensus 96 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~ 173 (418)
..++...+... . ...+.+.+. .+-+|+|||+|.+... .+..++.+++......
T Consensus 190 ------~~~~~~~~~~~---------~----~~~~~~~~~------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~ 244 (450)
T PRK00149 190 ------TNDFVNALRNN---------T----MEEFKEKYR------SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAG 244 (450)
T ss_pred ------HHHHHHHHHcC---------c----HHHHHHHHh------cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCC
Confidence 23333333111 1 122233333 3459999999999765 4667777776654433
Q ss_pred CcEEEEEeccCCChHHHHHHHhhcccCc-eEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHH
Q 014789 174 SQAVVIGVSCRLDADQLLEKRVRSRFSH-RKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFK 252 (418)
Q Consensus 174 ~~~~lI~~s~~~~~~~~l~~~v~sr~~~-~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (418)
.. ++|++.........+++++.|||.. ..+.+.||+.+++.+|++.++... ++ .++++.+.
T Consensus 245 ~~-iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~---~~--------------~l~~e~l~ 306 (450)
T PRK00149 245 KQ-IVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEE---GI--------------DLPDEVLE 306 (450)
T ss_pred Cc-EEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHc---CC--------------CCCHHHHH
Confidence 33 3333333322234588999999963 468999999999999999987511 10 12344333
Q ss_pred HHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhcc
Q 014789 253 EIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNS 298 (418)
Q Consensus 253 ~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~ 298 (418)
.++.. .+||+|.+...+......+......||.+.+.+++..+
T Consensus 307 ~ia~~---~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 307 FIAKN---ITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHcC---cCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 33332 46899998888877655554455679999999888765
No 45
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.71 E-value=3.1e-16 Score=150.30 Aligned_cols=218 Identities=19% Similarity=0.236 Sum_probs=142.2
Q ss_pred CCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
.+.|.+.+.+.|.+.+...+.. ..+.+++|+||||||||+++++++..+.. .++.+.+...
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~------~fi~i~~s~l---- 215 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA------TFIRVVGSEF---- 215 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC------CEEEEehHHH----
Confidence 5789999999999988654433 24788999999999999999999987643 2344544221
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----------chhHHHHHHhh
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----------KQRLLYSLLDA 168 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----------~~~~L~~l~~~ 168 (418)
.. ... +........++..... ..|.||+|||+|.+... .+..+..++..
T Consensus 216 --~~----k~~----------ge~~~~lr~lf~~A~~----~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ 275 (398)
T PTZ00454 216 --VQ----KYL----------GEGPRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQ 275 (398)
T ss_pred --HH----Hhc----------chhHHHHHHHHHHHHh----cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHH
Confidence 11 000 0011222333333332 36899999999998642 23466677665
Q ss_pred hcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH
Q 014789 169 MQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKN 244 (418)
Q Consensus 169 ~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 244 (418)
... ...++.+|++||. ++.+++++.+ ||. +.|.|++|+.++..+|++..+.- ..+
T Consensus 276 ld~~~~~~~v~VI~aTN~---~d~LDpAllR~GRfd-~~I~~~~P~~~~R~~Il~~~~~~---~~l-------------- 334 (398)
T PTZ00454 276 MDGFDQTTNVKVIMATNR---ADTLDPALLRPGRLD-RKIEFPLPDRRQKRLIFQTITSK---MNL-------------- 334 (398)
T ss_pred hhccCCCCCEEEEEecCC---chhCCHHHcCCCccc-EEEEeCCcCHHHHHHHHHHHHhc---CCC--------------
Confidence 543 2357889999998 5678888765 786 57999999999988888876541 011
Q ss_pred HhCChhHHHHHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccCC
Q 014789 245 ILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSHR 300 (418)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~~ 300 (418)
-.+-.+..++....+. ....+..+|..|...|. .+...|+.+||.+|+..+..
T Consensus 335 -~~dvd~~~la~~t~g~--sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 335 -SEEVDLEDFVSRPEKI--SAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred -CcccCHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHh
Confidence 0112234444443333 34556677777765543 35678999999999887643
No 46
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.71 E-value=1.2e-15 Score=145.44 Aligned_cols=304 Identities=17% Similarity=0.151 Sum_probs=168.7
Q ss_pred cCCCCccC--CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC
Q 014789 20 CDPNFVVK--HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD 97 (418)
Q Consensus 20 ~~~~~~~~--~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~ 97 (418)
|...|.|. +.++|++...+.|...+ ..+..++++|+||||||||++++.+++.+....+ ...++++||.....
T Consensus 5 w~~ky~P~~~~~~~g~~~~~~~L~~~~----~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~-~~~~~~i~~~~~~~ 79 (337)
T PRK12402 5 WTEKYRPALLEDILGQDEVVERLSRAV----DSPNLPHLLVQGPPGSGKTAAVRALARELYGDPW-ENNFTEFNVADFFD 79 (337)
T ss_pred hHHhhCCCcHHHhcCCHHHHHHHHHHH----hCCCCceEEEECCCCCCHHHHHHHHHHHhcCccc-ccceEEechhhhhh
Confidence 34445553 45789999888877765 3445567999999999999999999998875431 13456777654321
Q ss_pred h-HHHHHH---HHHHHHHhhhcccccCCChHhHHHHHHHHHhhc-CCCceEEEEEecchhhhhhcchhHHHHHHhhhccC
Q 014789 98 D-CCAFKE---IARQLCMEHQLLFSKMASFDDNSQFMIEMLREC-GLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSV 172 (418)
Q Consensus 98 ~-~~~~~~---i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~ 172 (418)
. ...+.. ....++... ..+.+..+.++.+....... .....+.+|||||+|.+....+..|..+++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~-- 153 (337)
T PRK12402 80 QGKKYLVEDPRFAHFLGTDK----RIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS-- 153 (337)
T ss_pred cchhhhhcCcchhhhhhhhh----hhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc--
Confidence 0 000000 000000000 00111122223222222211 112345699999999997665666666665432
Q ss_pred CCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHH
Q 014789 173 TSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFK 252 (418)
Q Consensus 173 ~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (418)
....+|.+++. ...+.+.+++|+ ..+.|.|++.+++.+++...+.- .++ .++++++.
T Consensus 154 -~~~~~Il~~~~---~~~~~~~L~sr~--~~v~~~~~~~~~~~~~l~~~~~~---~~~--------------~~~~~al~ 210 (337)
T PRK12402 154 -RTCRFIIATRQ---PSKLIPPIRSRC--LPLFFRAPTDDELVDVLESIAEA---EGV--------------DYDDDGLE 210 (337)
T ss_pred -CCCeEEEEeCC---hhhCchhhcCCc--eEEEecCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHH
Confidence 23445555544 234556788997 57899999999999999987641 111 13444454
Q ss_pred HHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccC-CCchhhhhcCCChHH-HHHHHHHhhhhhhcCC
Q 014789 253 EIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSH-RQPKLECIKDCSILE-LYILVCLKRLEVKEQN 330 (418)
Q Consensus 253 ~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~-~~~~~~~l~~L~~~~-~~iL~a~~~l~~~~~~ 330 (418)
.++.. ..||+|.+++.+..+.. +...||.+++.+++.... .....+.+..+.... ..++..+.++.. ..
T Consensus 211 ~l~~~---~~gdlr~l~~~l~~~~~----~~~~It~~~v~~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~l~~l~~--~~ 281 (337)
T PRK12402 211 LIAYY---AGGDLRKAILTLQTAAL----AAGEITMEAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLI--DE 281 (337)
T ss_pred HHHHH---cCCCHHHHHHHHHHHHH----cCCCCCHHHHHHHhCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH--Hc
Confidence 55543 26999999998876441 334799999998877533 223334433332211 112222233321 12
Q ss_pred cccHHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhCCc
Q 014789 331 SYNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFEHLLQREL 371 (418)
Q Consensus 331 ~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 371 (418)
..+-.++...+...+.. . ++.....++++.|.+...
T Consensus 282 g~~~~~i~~~l~~~~~~----~-~~~~~l~~~~~~l~~~d~ 317 (337)
T PRK12402 282 GLSGGEVLEELLRVARS----R-YRGDNLARLHRLAADADA 317 (337)
T ss_pred CCCHHHHHHHHHHHHHH----H-CCHHHHHHHHHHHHHHHH
Confidence 23344555544333332 1 455556677777766553
No 47
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=5e-16 Score=154.51 Aligned_cols=239 Identities=13% Similarity=0.144 Sum_probs=143.8
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIA 106 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~ 106 (418)
+.++|.+...+.|...+ ..+. ++.++++||+|+|||++++.+++.+....+.. .-.|..+.. ...+.
T Consensus 16 ~divGq~~v~~~L~~~i----~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~----~~pcg~C~~----C~~i~ 83 (527)
T PRK14969 16 SELVGQEHVVRALTNAL----EQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVT----ATPCGVCSA----CLEID 83 (527)
T ss_pred HHhcCcHHHHHHHHHHH----HcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC----CCCCCCCHH----HHHHh
Confidence 35789998888776665 3444 55568999999999999999999987543110 001211110 11110
Q ss_pred HHHHHhh-hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCC
Q 014789 107 RQLCMEH-QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRL 185 (418)
Q Consensus 107 ~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~ 185 (418)
..-.... ........+.++ .+.+.+.+......+++.|+||||+|.|....++.|...+ +.....+.+|++|++
T Consensus 84 ~~~~~d~~ei~~~~~~~vd~-ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~L---Eepp~~~~fIL~t~d- 158 (527)
T PRK14969 84 SGRFVDLIEVDAASNTQVDA-MRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTL---EEPPEHVKFILATTD- 158 (527)
T ss_pred cCCCCceeEeeccccCCHHH-HHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHH---hCCCCCEEEEEEeCC-
Confidence 0000000 000000111222 2233333333333456789999999999775455444444 444467888888876
Q ss_pred ChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCH
Q 014789 186 DADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTV 265 (418)
Q Consensus 186 ~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 265 (418)
.+.+.+.++||+ ..+.|.+++.+++.+.+...+.- +++ .++++++.. +.+. ..||+
T Consensus 159 --~~kil~tI~SRc--~~~~f~~l~~~~i~~~L~~il~~---egi--------------~~~~~al~~-la~~--s~Gsl 214 (527)
T PRK14969 159 --PQKIPVTVLSRC--LQFNLKQMPPPLIVSHLQHILEQ---ENI--------------PFDATALQL-LARA--AAGSM 214 (527)
T ss_pred --hhhCchhHHHHH--HHHhcCCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHH-HHHH--cCCCH
Confidence 445666799999 67999999999999999887641 111 122333333 3333 35999
Q ss_pred HHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCC
Q 014789 266 NHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDC 310 (418)
Q Consensus 266 r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L 310 (418)
|.+++++..++.. +...|+.++|.+.......+...+.+..+
T Consensus 215 r~al~lldqai~~---~~~~I~~~~v~~~~~~~~~~~i~~ll~al 256 (527)
T PRK14969 215 RDALSLLDQAIAY---GGGTVNESEVRAMLGAIDQDYLFALLEAL 256 (527)
T ss_pred HHHHHHHHHHHHh---cCCCcCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9999999988776 56689999998877655443333433333
No 48
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.71 E-value=1.5e-15 Score=140.17 Aligned_cols=242 Identities=16% Similarity=0.136 Sum_probs=149.0
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEE-EccccCCChHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIK-LNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~-in~~~~~~~~~~~~~i~~ 107 (418)
..+......+++...+...+.. .++.++|+||+|+|||++++.++..+.... +.+.. +++ ..+...++..++.
T Consensus 20 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~---~~~~~~~~~--~~~~~~~l~~i~~ 93 (269)
T TIGR03015 20 DFFYPSKGHKRAMAYLEYGLSQ-REGFILITGEVGAGKTTLIRNLLKRLDQER---VVAAKLVNT--RVDAEDLLRMVAA 93 (269)
T ss_pred HHhCCCHHHHHHHHHHHHHHhc-CCCEEEEEcCCCCCHHHHHHHHHHhcCCCC---eEEeeeeCC--CCCHHHHHHHHHH
Confidence 4445666667777777766543 356789999999999999999998876322 33332 232 2345567777777
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCCh
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDA 187 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~ 187 (418)
.++.+. .+.........+.+.+......+.+.+|+|||+|.+.....+.|..+.+........+.++.++.+ ++
T Consensus 94 ~lG~~~-----~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~ 167 (269)
T TIGR03015 94 DFGLET-----EGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQP-EF 167 (269)
T ss_pred HcCCCC-----CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCH-HH
Confidence 664321 122233334444444433222346789999999999765555566555543222233444444433 34
Q ss_pred HHHHH----HHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhcccc
Q 014789 188 DQLLE----KRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDS 263 (418)
Q Consensus 188 ~~~l~----~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 263 (418)
.+.+. ..+.+|+. ..++++|++.+++.+++..++....... ...++++++..+.+ . ..|
T Consensus 168 ~~~l~~~~~~~l~~r~~-~~~~l~~l~~~e~~~~l~~~l~~~g~~~-------------~~~~~~~~~~~i~~-~--s~G 230 (269)
T TIGR03015 168 RETLQSPQLQQLRQRII-ASCHLGPLDREETREYIEHRLERAGNRD-------------APVFSEGAFDAIHR-F--SRG 230 (269)
T ss_pred HHHHcCchhHHHHhhee-eeeeCCCCCHHHHHHHHHHHHHHcCCCC-------------CCCcCHHHHHHHHH-H--cCC
Confidence 44442 24566764 4688999999999999999985211000 00123333333322 2 358
Q ss_pred CHHHHHHHHHHHhhcc-cccCCCCChhhHHHHHhccC
Q 014789 264 TVNHLLRFLFLAVSYM-DLESGFLSFENFKTALSNSH 299 (418)
Q Consensus 264 d~r~~~~~l~~a~~~a-~~~~~~it~~~v~~a~~~~~ 299 (418)
++|.+..+|..+...+ ..+...|+.++|.+++..+.
T Consensus 231 ~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 231 IPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEID 267 (269)
T ss_pred cccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Confidence 9999999998887664 34677899999999987754
No 49
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=4.1e-15 Score=146.09 Aligned_cols=222 Identities=16% Similarity=0.189 Sum_probs=142.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCC------------------eEEE
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDT------------------ISVI 88 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~------------------~~~v 88 (418)
+.++|.+...+.|...+ ..+. ++.++++||+|+|||++++.+++.+....+.. +.++
T Consensus 14 deiiGqe~v~~~L~~~I----~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 14 DELIGQESVSKTLSLAL----DNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred HHccCcHHHHHHHHHHH----HcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 35889888877777765 3444 55568999999999999999999986432111 1222
Q ss_pred EEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhh
Q 014789 89 KLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDA 168 (418)
Q Consensus 89 ~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~ 168 (418)
.+++.... +.++..+.+ +........+...|+||||+|.|....++.|...++.
T Consensus 90 eldaas~~-------------------------gId~IReli-e~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE 143 (535)
T PRK08451 90 EMDAASNR-------------------------GIDDIRELI-EQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE 143 (535)
T ss_pred Eecccccc-------------------------CHHHHHHHH-HHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh
Confidence 22221110 112211111 1111122234678999999999987666666555554
Q ss_pred hccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCC
Q 014789 169 MQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILAD 248 (418)
Q Consensus 169 ~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (418)
+ +..+.+|++++. ...+.+.++||+ ..++|.|++.+++.+.+...+.- .++ .+++
T Consensus 144 p---p~~t~FIL~ttd---~~kL~~tI~SRc--~~~~F~~Ls~~ei~~~L~~Il~~---EGi--------------~i~~ 198 (535)
T PRK08451 144 P---PSYVKFILATTD---PLKLPATILSRT--QHFRFKQIPQNSIISHLKTILEK---EGV--------------SYEP 198 (535)
T ss_pred c---CCceEEEEEECC---hhhCchHHHhhc--eeEEcCCCCHHHHHHHHHHHHHH---cCC--------------CCCH
Confidence 3 456778888865 467778899998 57999999999999999887651 111 1233
Q ss_pred hhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCC
Q 014789 249 GRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDC 310 (418)
Q Consensus 249 ~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L 310 (418)
+++..++. . ..||+|.+++++..++..+ ...||.++|.+.+.....+.+.+.+..+
T Consensus 199 ~Al~~Ia~-~--s~GdlR~alnlLdqai~~~---~~~It~~~V~~~lg~~~~~~I~~li~ai 254 (535)
T PRK08451 199 EALEILAR-S--GNGSLRDTLTLLDQAIIYC---KNAITESKVADMLGLLDPSKLEDFFQAI 254 (535)
T ss_pred HHHHHHHH-H--cCCcHHHHHHHHHHHHHhc---CCCCCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 33333333 3 3599999999999887763 4578888888776655444444444433
No 50
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.71 E-value=7.6e-16 Score=138.33 Aligned_cols=215 Identities=14% Similarity=0.097 Sum_probs=132.0
Q ss_pred cCCCCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 20 CDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 20 ~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
+.+++.+++.++| .... ....+.........++++|+||+|+|||++++.+++.+.... ..+.|++.......
T Consensus 15 ~~~~~~fd~f~~~-~n~~--a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~---~~v~y~~~~~~~~~- 87 (235)
T PRK08084 15 LPDDETFASFYPG-DNDS--LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRG---RAVGYVPLDKRAWF- 87 (235)
T ss_pred CCCcCCccccccC-ccHH--HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEEHHHHhhh-
Confidence 3445555445556 2221 234455545555667999999999999999999998877543 44555554221100
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccCCCcEE
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVTSQAV 177 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~~~~~ 177 (418)
..+ +.+.+.. .-+|+|||+|.+... .+..|+.+++..... .+..
T Consensus 88 --~~~-------------------------~~~~~~~------~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~-g~~~ 133 (235)
T PRK08084 88 --VPE-------------------------VLEGMEQ------LSLVCIDNIECIAGDELWEMAIFDLYNRILES-GRTR 133 (235)
T ss_pred --hHH-------------------------HHHHhhh------CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHc-CCCe
Confidence 000 1111211 248999999999754 466777777664432 3334
Q ss_pred EEEeccCCCh-HHHHHHHhhcccC-ceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHH
Q 014789 178 VIGVSCRLDA-DQLLEKRVRSRFS-HRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIV 255 (418)
Q Consensus 178 lI~~s~~~~~-~~~l~~~v~sr~~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (418)
+|++++.... ...+.++++||+. ...+.+.|++.+++.++++.+... .++ .++++.+..++
T Consensus 134 li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~---~~~--------------~l~~~v~~~L~ 196 (235)
T PRK08084 134 LLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARL---RGF--------------ELPEDVGRFLL 196 (235)
T ss_pred EEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHHHH
Confidence 6666664321 1236799999996 346899999999999999876530 011 12344444444
Q ss_pred HHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHH
Q 014789 256 NTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTAL 295 (418)
Q Consensus 256 ~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~ 295 (418)
++ ..||+|.+..++......+.....+||.+.+++++
T Consensus 197 ~~---~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~k~~l 233 (235)
T PRK08084 197 KR---LDREMRTLFMTLDQLDRASITAQRKLTIPFVKEIL 233 (235)
T ss_pred Hh---hcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 43 36899999988877321221234569999888765
No 51
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.70 E-value=2.6e-15 Score=142.07 Aligned_cols=226 Identities=16% Similarity=0.157 Sum_probs=145.2
Q ss_pred hhcCCCCccC--CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccC
Q 014789 18 RLCDPNFVVK--HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLH 95 (418)
Q Consensus 18 ~~~~~~~~~~--~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~ 95 (418)
..|...|-|. +.++|+++.++.+..++ ..+..++++|+||||+|||++++.+++.+..... ...++.+++...
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i----~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-~~~~i~~~~~~~ 79 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYV----KEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-RENFLELNASDE 79 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHH----hCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-ccceEEeccccc
Confidence 3455556551 24789998888877765 4455567999999999999999999998764331 134555655433
Q ss_pred CChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCC-CceEEEEEecchhhhhhcchhHHHHHHhhhccCCC
Q 014789 96 SDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGL-AHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTS 174 (418)
Q Consensus 96 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~ 174 (418)
... ..+.+...++. ..... ...+.+|+|||+|.+....+..|..+++.+. .
T Consensus 80 ~~~-~~~~~~i~~~~------------------------~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~---~ 131 (319)
T PRK00440 80 RGI-DVIRNKIKEFA------------------------RTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS---Q 131 (319)
T ss_pred cch-HHHHHHHHHHH------------------------hcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC---C
Confidence 221 12222222211 11100 1246799999999997765666666655432 3
Q ss_pred cEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHH
Q 014789 175 QAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEI 254 (418)
Q Consensus 175 ~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (418)
...+|++++. ...+.+.+++|+ ..+.|+|++.+++..++..++.-. ++ .++++++..+
T Consensus 132 ~~~lIl~~~~---~~~l~~~l~sr~--~~~~~~~l~~~ei~~~l~~~~~~~---~~--------------~i~~~al~~l 189 (319)
T PRK00440 132 NTRFILSCNY---SSKIIDPIQSRC--AVFRFSPLKKEAVAERLRYIAENE---GI--------------EITDDALEAI 189 (319)
T ss_pred CCeEEEEeCC---ccccchhHHHHh--heeeeCCCCHHHHHHHHHHHHHHc---CC--------------CCCHHHHHHH
Confidence 4456666654 234556788898 468999999999999999887410 10 1344555555
Q ss_pred HHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhh
Q 014789 255 VNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLE 305 (418)
Q Consensus 255 ~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~ 305 (418)
+.. ..||+|.+++.+..+... ...||.++|.++.....+....+
T Consensus 190 ~~~---~~gd~r~~~~~l~~~~~~----~~~it~~~v~~~~~~~~~~~i~~ 233 (319)
T PRK00440 190 YYV---SEGDMRKAINALQAAAAT----GKEVTEEAVYKITGTARPEEIRE 233 (319)
T ss_pred HHH---cCCCHHHHHHHHHHHHHc----CCCCCHHHHHHHhCCCCHHHHHH
Confidence 443 369999999999876543 35799999999887665544433
No 52
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=2.6e-15 Score=151.20 Aligned_cols=224 Identities=16% Similarity=0.198 Sum_probs=139.6
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
.++|.+...+.|...+ ..+. ++.+|++||+|+|||++++.+++.+....+.. ..-.|..+. ..
T Consensus 19 dIiGQe~~v~~L~~aI----~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~---~~~pC~~C~-------~~-- 82 (725)
T PRK07133 19 DIVGQDHIVQTLKNII----KSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD---LLEPCQECI-------EN-- 82 (725)
T ss_pred HhcCcHHHHHHHHHHH----HcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC---CCCchhHHH-------Hh--
Confidence 5789888887776665 3434 66678999999999999999999886543110 000111110 00
Q ss_pred HHHHhhhc---ccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 108 QLCMEHQL---LFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 108 ~l~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
.+..... ......+.++ .+.+.+.+......+.+.|+||||+|.|....+..|...++. .+..+++|++++.
T Consensus 83 -~~~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE---PP~~tifILaTte 157 (725)
T PRK07133 83 -VNNSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE---PPKHVIFILATTE 157 (725)
T ss_pred -hcCCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc---CCCceEEEEEcCC
Confidence 0000000 0000011222 334444454444456788999999999987555555555444 4467888888865
Q ss_pred CChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccC
Q 014789 185 LDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDST 264 (418)
Q Consensus 185 ~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd 264 (418)
.+.+.+.++||+ ..+.|.|++.+++.+++...+.- .++ .++++++.. +... ..|+
T Consensus 158 ---~~KLl~TI~SRc--q~ieF~~L~~eeI~~~L~~il~k---egI--------------~id~eAl~~-LA~l--S~Gs 212 (725)
T PRK07133 158 ---VHKIPLTILSRV--QRFNFRRISEDEIVSRLEFILEK---ENI--------------SYEKNALKL-IAKL--SSGS 212 (725)
T ss_pred ---hhhhhHHHHhhc--eeEEccCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHH-HHHH--cCCC
Confidence 567888999999 57999999999999999987641 011 112333333 3322 3599
Q ss_pred HHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCC
Q 014789 265 VNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQ 301 (418)
Q Consensus 265 ~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~ 301 (418)
+|.++.++..+... +...|+.++|.+++.....+
T Consensus 213 lR~AlslLekl~~y---~~~~It~e~V~ellg~~~~e 246 (725)
T PRK07133 213 LRDALSIAEQVSIF---GNNKITLKNVEELFGLVSNE 246 (725)
T ss_pred HHHHHHHHHHHHHh---ccCCCCHHHHHHHHcCCCHH
Confidence 99999999886555 33459999888776554433
No 53
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.70 E-value=5.1e-16 Score=148.98 Aligned_cols=217 Identities=18% Similarity=0.236 Sum_probs=137.2
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.+.|+++++++|.+.+...+.. ..+.+++|+||||||||++++++++.+... ++.+.+..
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~------~~~v~~~~---- 191 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT------FIRVVGSE---- 191 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC------EEecchHH----
Confidence 46899999999999988765444 236789999999999999999999877543 23333211
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----------chhHHHHHHh
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----------KQRLLYSLLD 167 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----------~~~~L~~l~~ 167 (418)
+.... ++ ........+++.... ..|.||+|||+|.+... .+..+..++.
T Consensus 192 --l~~~~---~g-----------~~~~~i~~~f~~a~~----~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~ 251 (364)
T TIGR01242 192 --LVRKY---IG-----------EGARLVREIFELAKE----KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLA 251 (364)
T ss_pred --HHHHh---hh-----------HHHHHHHHHHHHHHh----cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHH
Confidence 11110 00 001112222332222 35789999999998642 2345666665
Q ss_pred hhcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH
Q 014789 168 AMQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK 243 (418)
Q Consensus 168 ~~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 243 (418)
.... ...++.+|++||.. +.+++.+.+ ||. +.|.+++|+.++..+|++..+.-. .+.
T Consensus 252 ~ld~~~~~~~v~vI~ttn~~---~~ld~al~r~grfd-~~i~v~~P~~~~r~~Il~~~~~~~---~l~------------ 312 (364)
T TIGR01242 252 ELDGFDPRGNVKVIAATNRP---DILDPALLRPGRFD-RIIEVPLPDFEGRLEILKIHTRKM---KLA------------ 312 (364)
T ss_pred HhhCCCCCCCEEEEEecCCh---hhCChhhcCcccCc-eEEEeCCcCHHHHHHHHHHHHhcC---CCC------------
Confidence 4432 23578999999984 567777764 776 579999999999999998876410 000
Q ss_pred HHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhcc
Q 014789 244 NILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNS 298 (418)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~ 298 (418)
.+-.+..+++...+.+| +.+..+|..|+..|. .+...|+.+||.+|+..+
T Consensus 313 ---~~~~~~~la~~t~g~sg--~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 313 ---EDVDLEAIAKMTEGASG--ADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred ---ccCCHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 11123334443333333 334455666655542 366789999999998764
No 54
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.70 E-value=3e-15 Score=143.83 Aligned_cols=213 Identities=17% Similarity=0.289 Sum_probs=138.3
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCC------------------CeEEEEE
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPD------------------TISVIKL 90 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~------------------~~~~v~i 90 (418)
.++|.++.++.|...+.. +..++.++++||||+|||++++.+++.+....+. .+.++.+
T Consensus 15 ~iig~~~~~~~l~~~~~~---~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~ 91 (355)
T TIGR02397 15 DVIGQEHIVQTLKNAIKN---GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEI 91 (355)
T ss_pred hccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEe
Confidence 578999999988876632 2335678899999999999999999998643211 1122333
Q ss_pred ccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhc
Q 014789 91 NGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ 170 (418)
Q Consensus 91 n~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~ 170 (418)
++.... +. +....+.+.+......+.+.|+||||+|.+....++.|...++.
T Consensus 92 ~~~~~~-------------------------~~-~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~-- 143 (355)
T TIGR02397 92 DAASNN-------------------------GV-DDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE-- 143 (355)
T ss_pred eccccC-------------------------CH-HHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC--
Confidence 322111 11 11222333333322334667999999999976544444444433
Q ss_pred cCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChh
Q 014789 171 SVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGR 250 (418)
Q Consensus 171 ~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (418)
....+++|++++. .+.+.+.++||+ ..+.|+|++.+++.+++..++.- .+. .+++++
T Consensus 144 -~~~~~~lIl~~~~---~~~l~~~l~sr~--~~~~~~~~~~~~l~~~l~~~~~~---~g~--------------~i~~~a 200 (355)
T TIGR02397 144 -PPEHVVFILATTE---PHKIPATILSRC--QRFDFKRIPLEDIVERLKKILDK---EGI--------------KIEDEA 200 (355)
T ss_pred -CccceeEEEEeCC---HHHHHHHHHhhe--eEEEcCCCCHHHHHHHHHHHHHH---cCC--------------CCCHHH
Confidence 3356777777765 457778899998 57899999999999999998751 011 123333
Q ss_pred HHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCC
Q 014789 251 FKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQ 301 (418)
Q Consensus 251 ~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~ 301 (418)
+..++.. ..||+|.+.+.+..+.... ...||.++|.++.......
T Consensus 201 ~~~l~~~---~~g~~~~a~~~lekl~~~~---~~~it~~~v~~~~~~~~~~ 245 (355)
T TIGR02397 201 LELIARA---ADGSLRDALSLLDQLISFG---NGNITYEDVNELLGLVDDE 245 (355)
T ss_pred HHHHHHH---cCCChHHHHHHHHHHHhhc---CCCCCHHHHHHHhCCCCHH
Confidence 3333432 3589999999998876652 3469999998877654433
No 55
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=1.4e-15 Score=150.27 Aligned_cols=239 Identities=15% Similarity=0.187 Sum_probs=143.7
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++|++...+.+...+. .+..+++++++||+|+|||++++.+++.+.+..+... -.|..+. ..+.+...
T Consensus 17 dIIGQe~iv~~L~~aI~---~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~----~~Cg~C~----sCr~i~~~ 85 (605)
T PRK05896 17 QIIGQELIKKILVNAIL---NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG----DCCNSCS----VCESINTN 85 (605)
T ss_pred HhcCcHHHHHHHHHHHH---cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC----CCCcccH----HHHHHHcC
Confidence 57899998887776652 2334677899999999999999999999875432110 0121111 11111111
Q ss_pred HHHhh-hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCCh
Q 014789 109 LCMEH-QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDA 187 (418)
Q Consensus 109 l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~ 187 (418)
.+... ........+.++ .+.+.+.+......+...|+||||+|.|....++.|...++.+ +..+++|++++.
T Consensus 86 ~h~DiieIdaas~igVd~-IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP---p~~tvfIL~Tt~--- 158 (605)
T PRK05896 86 QSVDIVELDAASNNGVDE-IRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP---PKHVVFIFATTE--- 158 (605)
T ss_pred CCCceEEeccccccCHHH-HHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC---CCcEEEEEECCC---
Confidence 10000 000000112222 2333333333333345678999999999766556666555543 356788888865
Q ss_pred HHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHH
Q 014789 188 DQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNH 267 (418)
Q Consensus 188 ~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~ 267 (418)
...+.+.++||+ ..+.|.|++.+++..++...+.- .+. -++++++..++. . ..||+|.
T Consensus 159 ~~KLl~TI~SRc--q~ieF~~Ls~~eL~~~L~~il~k---egi--------------~Is~eal~~La~-l--S~GdlR~ 216 (605)
T PRK05896 159 FQKIPLTIISRC--QRYNFKKLNNSELQELLKSIAKK---EKI--------------KIEDNAIDKIAD-L--ADGSLRD 216 (605)
T ss_pred hHhhhHHHHhhh--hhcccCCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHHHHH-H--cCCcHHH
Confidence 567888999999 57999999999999999987641 010 123333333332 2 3589999
Q ss_pred HHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCC
Q 014789 268 LLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDC 310 (418)
Q Consensus 268 ~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L 310 (418)
+++.+....... + ..|+.++|.+.............+..+
T Consensus 217 AlnlLekL~~y~--~-~~It~e~V~ellg~~~~~~Vf~Ll~AI 256 (605)
T PRK05896 217 GLSILDQLSTFK--N-SEIDIEDINKTFGLVDNNKKINLIELI 256 (605)
T ss_pred HHHHHHHHHhhc--C-CCCCHHHHHHHhccCCHHHHHHHHHHH
Confidence 999998865542 2 349999888876544433333333333
No 56
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=2.1e-15 Score=151.87 Aligned_cols=230 Identities=14% Similarity=0.145 Sum_probs=141.6
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIA 106 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~ 106 (418)
+.++|.+...+.|...+ ..+. ++.++++||+|+|||++++.+++.+....+... -.|..+. ..+++.
T Consensus 16 ~~iiGq~~v~~~L~~~i----~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~----~~c~~c~----~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAI----DTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA----EPCNVCP----PCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHH----HcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC----CCCCccH----HHHHHh
Confidence 36889998887777665 3444 556789999999999999999999875431100 0111110 011110
Q ss_pred HHHHHhh-hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCC
Q 014789 107 RQLCMEH-QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRL 185 (418)
Q Consensus 107 ~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~ 185 (418)
..-.... ........+.++ .+.+.+.+......+.+.|+||||+|.|....++.|...++.+ ...+.+|++|+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep---p~~~~fIl~t~~- 158 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP---PPHVKFIFATTE- 158 (576)
T ss_pred cCCCCCeeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC---CCCeEEEEEeCC-
Confidence 0000000 000000111122 2233333333333456789999999999876666666666653 367888888876
Q ss_pred ChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCH
Q 014789 186 DADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTV 265 (418)
Q Consensus 186 ~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 265 (418)
...+.+.++||+ ..+.|.+++.+++.+.+...+.- .++ .++++++..+++ . ..||+
T Consensus 159 --~~kl~~tI~SRc--~~~~f~~l~~~~i~~~L~~i~~~---egi--------------~i~~~al~~la~-~--a~G~l 214 (576)
T PRK14965 159 --PHKVPITILSRC--QRFDFRRIPLQKIVDRLRYIADQ---EGI--------------SISDAALALVAR-K--GDGSM 214 (576)
T ss_pred --hhhhhHHHHHhh--hhhhcCCCCHHHHHHHHHHHHHH---hCC--------------CCCHHHHHHHHH-H--cCCCH
Confidence 467888999999 57899999999999998887640 111 123343433333 2 35999
Q ss_pred HHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCC
Q 014789 266 NHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQ 301 (418)
Q Consensus 266 r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~ 301 (418)
|.+++.+..++.+. ...|+.++|...+.....+
T Consensus 215 r~al~~Ldqliay~---g~~It~edV~~llG~~~~~ 247 (576)
T PRK14965 215 RDSLSTLDQVLAFC---GDAVGDDDVAELLGVVDRR 247 (576)
T ss_pred HHHHHHHHHHHHhc---cCCCCHHHHHHHhCCCCHH
Confidence 99999998877763 2468988888765544433
No 57
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.69 E-value=6.7e-16 Score=136.84 Aligned_cols=216 Identities=19% Similarity=0.169 Sum_probs=134.9
Q ss_pred cCCCCccC--CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC
Q 014789 20 CDPNFVVK--HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD 97 (418)
Q Consensus 20 ~~~~~~~~--~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~ 97 (418)
|...|-|. +.+.|.+.....|...+ .....+++++|||||||||++++.+++++..+....-.+...|+.....
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~----~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderG 101 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNAL----LRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERG 101 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHH----hhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccc
Confidence 44445441 34677777777666655 4456789999999999999999999999987442223334444332221
Q ss_pred hHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHh--hcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCc
Q 014789 98 DCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLR--ECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQ 175 (418)
Q Consensus 98 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~ 175 (418)
.. +.++ +..+++ .+..... .......+.||||||+|.|....|..|...++-. ...
T Consensus 102 is-vvr~--------------Kik~fa----kl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~---s~~ 159 (346)
T KOG0989|consen 102 IS-VVRE--------------KIKNFA----KLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDF---SRT 159 (346)
T ss_pred cc-chhh--------------hhcCHH----HHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhcc---ccc
Confidence 10 1110 001111 1111111 1112345689999999999998888888776652 345
Q ss_pred EEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHH
Q 014789 176 AVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIV 255 (418)
Q Consensus 176 ~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (418)
..+|.++|- .+++-+.+.||++ .++|+++..+.+.+.|+.... .+++ -++++++..++
T Consensus 160 trFiLIcny---lsrii~pi~SRC~--KfrFk~L~d~~iv~rL~~Ia~---~E~v--------------~~d~~al~~I~ 217 (346)
T KOG0989|consen 160 TRFILICNY---LSRIIRPLVSRCQ--KFRFKKLKDEDIVDRLEKIAS---KEGV--------------DIDDDALKLIA 217 (346)
T ss_pred eEEEEEcCC---hhhCChHHHhhHH--HhcCCCcchHHHHHHHHHHHH---HhCC--------------CCCHHHHHHHH
Confidence 677778865 6788888999994 689999999888887777543 1111 13444444444
Q ss_pred HHHhccccCHHHHHHHHHHHhhcccccCCCCChhh
Q 014789 256 NTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFEN 290 (418)
Q Consensus 256 ~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~ 290 (418)
. . ..||.|+|+.++..+.. ...+||..-
T Consensus 218 ~-~--S~GdLR~Ait~Lqsls~----~gk~It~~~ 245 (346)
T KOG0989|consen 218 K-I--SDGDLRRAITTLQSLSL----LGKRITTSL 245 (346)
T ss_pred H-H--cCCcHHHHHHHHHHhhc----cCcccchHH
Confidence 3 2 35999999999976432 444566433
No 58
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=2.1e-15 Score=151.20 Aligned_cols=239 Identities=16% Similarity=0.175 Sum_probs=147.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCe--EEEEEccccCCChHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTI--SVIKLNGLLHSDDCCAFKEI 105 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~--~~v~in~~~~~~~~~~~~~i 105 (418)
+.++|.+...+.|.+.+.. +..+++++|+||+|+|||++++.+++.+....+..- ..+. .|..+. ..+.+
T Consensus 24 ~dliGq~~~v~~L~~~~~~---gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~-~cg~c~----~C~~i 95 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFET---GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID-LCGVGE----HCQAI 95 (598)
T ss_pred HHhcCcHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc-cCcccH----HHHHH
Confidence 3589999998888877642 334778999999999999999999999875431100 0000 111111 11222
Q ss_pred HHHHHHhh-hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 106 ARQLCMEH-QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 106 ~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
....+... ........+.++ .+.+.+.+......+.+.|+||||+|.|....++.|...++. ....++||++++.
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~-IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe---Pp~~~~fIl~tte 171 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDD-IREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE---PPPHVKFIFATTE 171 (598)
T ss_pred hcCCCCceEEecccccCCHHH-HHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh---CCCCeEEEEEeCC
Confidence 21111110 000111122333 233444444433445678999999999987555555555444 3466788888866
Q ss_pred CChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccC
Q 014789 185 LDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDST 264 (418)
Q Consensus 185 ~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd 264 (418)
.+.+.+.++||+ ..+.|.+++.+++.+++...+.- .+. -++++++..+++. ..|+
T Consensus 172 ---~~kll~tI~SRc--q~~~f~~l~~~el~~~L~~i~~k---egi--------------~i~~eAl~lIa~~---a~Gd 226 (598)
T PRK09111 172 ---IRKVPVTVLSRC--QRFDLRRIEADVLAAHLSRIAAK---EGV--------------EVEDEALALIARA---AEGS 226 (598)
T ss_pred ---hhhhhHHHHhhe--eEEEecCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHHHHHH---cCCC
Confidence 345677899999 57999999999999999987641 111 1233433333432 3599
Q ss_pred HHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhh
Q 014789 265 VNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLEC 306 (418)
Q Consensus 265 ~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~ 306 (418)
+|.+++.+.+++.. +...||.++|.+.+.........+.
T Consensus 227 lr~al~~Ldkli~~---g~g~It~e~V~~llg~~~~~~if~L 265 (598)
T PRK09111 227 VRDGLSLLDQAIAH---GAGEVTAEAVRDMLGLADRARVIDL 265 (598)
T ss_pred HHHHHHHHHHHHhh---cCCCcCHHHHHHHhCCCCHHHHHHH
Confidence 99999999887665 3457999999987765444333333
No 59
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.69 E-value=2.8e-15 Score=153.14 Aligned_cols=215 Identities=20% Similarity=0.225 Sum_probs=136.9
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++|++..+.. ...+...+..+..++++|+||||||||++++.+++..... ++.+||...... -++++...
T Consensus 29 d~vGQe~ii~~-~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~------f~~lna~~~~i~--dir~~i~~ 99 (725)
T PRK13341 29 EFVGQDHILGE-GRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAH------FSSLNAVLAGVK--DLRAEVDR 99 (725)
T ss_pred HhcCcHHHhhh-hHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCc------ceeehhhhhhhH--HHHHHHHH
Confidence 47898887754 2334555566777899999999999999999999876432 356666432110 11111111
Q ss_pred HHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChH
Q 014789 109 LCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDAD 188 (418)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~ 188 (418)
..+.+.. .+...+|||||+|.+....|+.|...++ ...+++|++++... .
T Consensus 100 ---------------------a~~~l~~---~~~~~IL~IDEIh~Ln~~qQdaLL~~lE-----~g~IiLI~aTTenp-~ 149 (725)
T PRK13341 100 ---------------------AKERLER---HGKRTILFIDEVHRFNKAQQDALLPWVE-----NGTITLIGATTENP-Y 149 (725)
T ss_pred ---------------------HHHHhhh---cCCceEEEEeChhhCCHHHHHHHHHHhc-----CceEEEEEecCCCh-H
Confidence 1111111 1246799999999998766776665543 25688888876643 4
Q ss_pred HHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHH
Q 014789 189 QLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHL 268 (418)
Q Consensus 189 ~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~ 268 (418)
..+.+++.||+ ..+.|+|++.+++..+++..+.... ..+.. ..-.++++++..+++ . ..||+|.+
T Consensus 150 ~~l~~aL~SR~--~v~~l~pLs~edi~~IL~~~l~~~~---------~~~g~-~~v~I~deaL~~La~-~--s~GD~R~l 214 (725)
T PRK13341 150 FEVNKALVSRS--RLFRLKSLSDEDLHQLLKRALQDKE---------RGYGD-RKVDLEPEAEKHLVD-V--ANGDARSL 214 (725)
T ss_pred hhhhhHhhccc--cceecCCCCHHHHHHHHHHHHHHHH---------hhcCC-cccCCCHHHHHHHHH-h--CCCCHHHH
Confidence 56789999997 5689999999999999998764100 00000 001234444444443 3 27999999
Q ss_pred HHHHHHHhhcccc---cCCCCChhhHHHHHhc
Q 014789 269 LRFLFLAVSYMDL---ESGFLSFENFKTALSN 297 (418)
Q Consensus 269 ~~~l~~a~~~a~~---~~~~it~~~v~~a~~~ 297 (418)
++++..++..+.. +...|+.+++.+++..
T Consensus 215 ln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 215 LNALELAVESTPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred HHHHHHHHHhcccCCCCceeccHHHHHHHHHH
Confidence 9999987654322 1224788888877654
No 60
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.69 E-value=1e-15 Score=149.61 Aligned_cols=174 Identities=18% Similarity=0.272 Sum_probs=115.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCC--CeEEEEEccccCC
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPD--TISVIKLNGLLHS 96 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~--~~~~v~in~~~~~ 96 (418)
+.+.|.+++++++.+.+...+.. ..+.+++||||||||||++++++++.+...... .....++++....
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 35788999999999987643322 246789999999999999999999998754210 0122333322110
Q ss_pred ChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc---------hhHHHHHHh
Q 014789 97 DDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK---------QRLLYSLLD 167 (418)
Q Consensus 97 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~---------~~~L~~l~~ 167 (418)
++. ... +..+.....+++........+.|+||+|||+|.+...+ ..++..|+.
T Consensus 262 ----Ll~----kyv----------Gete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~ 323 (512)
T TIGR03689 262 ----LLN----KYV----------GETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLS 323 (512)
T ss_pred ----hcc----ccc----------chHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHH
Confidence 110 000 01122233344444332223469999999999997541 134566665
Q ss_pred hhccC--CCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 168 AMQSV--TSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 168 ~~~~~--~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
..... ..++++|++||. .+.+++++.+ ||. ..|.|++|+.++..+|++.++.
T Consensus 324 ~LDgl~~~~~ViVI~ATN~---~d~LDpALlRpGRfD-~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 324 ELDGVESLDNVIVIGASNR---EDMIDPAILRPGRLD-VKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred HhcccccCCceEEEeccCC---hhhCCHhhcCccccc-eEEEeCCCCHHHHHHHHHHHhh
Confidence 54432 257899999998 6678999987 887 5699999999999999999875
No 61
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=5.9e-15 Score=145.09 Aligned_cols=233 Identities=14% Similarity=0.177 Sum_probs=141.1
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCC--eEEEEEccccCCC--hHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDT--ISVIKLNGLLHSD--DCCAFK 103 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~--~~~v~in~~~~~~--~~~~~~ 103 (418)
.++|.+.....|...+ ..+. ++.++++||+|+|||++++.+++.+....+.. .+-.+.||..... ...++
T Consensus 17 diiGq~~i~~~L~~~i----~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~- 91 (486)
T PRK14953 17 EVIGQEIVVRILKNAV----KLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI- 91 (486)
T ss_pred HccChHHHHHHHHHHH----HcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE-
Confidence 4788888887766655 4444 45567899999999999999999887432110 1111112211000 00000
Q ss_pred HHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEecc
Q 014789 104 EIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSC 183 (418)
Q Consensus 104 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~ 183 (418)
+ +......+. +..+.+.+.+......+.+.|+||||+|.+....++.|...++. .+..+++|++++
T Consensus 92 e----------idaas~~gv-d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe---pp~~~v~Il~tt 157 (486)
T PRK14953 92 E----------IDAASNRGI-DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE---PPPRTIFILCTT 157 (486)
T ss_pred E----------EeCccCCCH-HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc---CCCCeEEEEEEC
Confidence 0 000000111 12233444444444456788999999999976555555444443 335567777776
Q ss_pred CCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhcccc
Q 014789 184 RLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDS 263 (418)
Q Consensus 184 ~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 263 (418)
. ...+.+.+.||+ ..+.|.|++.+++.+++..++... ++ .++++++..++ .. ..|
T Consensus 158 ~---~~kl~~tI~SRc--~~i~f~~ls~~el~~~L~~i~k~e---gi--------------~id~~al~~La-~~--s~G 212 (486)
T PRK14953 158 E---YDKIPPTILSRC--QRFIFSKPTKEQIKEYLKRICNEE---KI--------------EYEEKALDLLA-QA--SEG 212 (486)
T ss_pred C---HHHHHHHHHHhc--eEEEcCCCCHHHHHHHHHHHHHHc---CC--------------CCCHHHHHHHH-HH--cCC
Confidence 5 456777899999 579999999999999999986511 11 12333333333 22 359
Q ss_pred CHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhc
Q 014789 264 TVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIK 308 (418)
Q Consensus 264 d~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~ 308 (418)
|+|.+++.+..+... +...||.++|.+++.........+.+.
T Consensus 213 ~lr~al~~Ldkl~~~---~~~~It~~~V~~~lg~~~~~~vf~Li~ 254 (486)
T PRK14953 213 GMRDAASLLDQASTY---GEGKVTIKVVEEFLGIVSQESVRKFLN 254 (486)
T ss_pred CHHHHHHHHHHHHHh---cCCCcCHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999987655 355799999988776655444434333
No 62
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.69 E-value=1.1e-15 Score=148.27 Aligned_cols=255 Identities=15% Similarity=0.189 Sum_probs=166.5
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCC--CeEEEEEccccCCChHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPD--TISVIKLNGLLHSDDCCAFKEI 105 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~--~~~~v~in~~~~~~~~~~~~~i 105 (418)
.++|.+.....|...+ ..+. .+..+++||+|+|||++++.+++.+....+. .++-...+|.....- . .
T Consensus 17 evvGQe~v~~~L~nal----~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g-~----~ 87 (515)
T COG2812 17 DVVGQEHVVKTLSNAL----ENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEG-S----L 87 (515)
T ss_pred HhcccHHHHHHHHHHH----HhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcC-C----c
Confidence 5688888777776665 3344 6677899999999999999999999876421 122222222111100 0 0
Q ss_pred HHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCC
Q 014789 106 ARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRL 185 (418)
Q Consensus 106 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~ 185 (418)
.+-+.. .-....+. +..+.|.+........+++-|+||||+|.|.. .....|+...+..+..+.+|++|+.
T Consensus 88 ~DviEi----DaASn~gV-ddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~---~afNALLKTLEEPP~hV~FIlATTe- 158 (515)
T COG2812 88 IDVIEI----DAASNTGV-DDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK---QAFNALLKTLEEPPSHVKFILATTE- 158 (515)
T ss_pred ccchhh----hhhhccCh-HHHHHHHHHhccCCccccceEEEEecHHhhhH---HHHHHHhcccccCccCeEEEEecCC-
Confidence 000000 00011122 23444555555556678999999999999987 4555666666666789999999987
Q ss_pred ChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCH
Q 014789 186 DADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTV 265 (418)
Q Consensus 186 ~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 265 (418)
+..+.+.+.||+ +++.|..++.+++...|..-+. .++ +-.++.+...+.+. ..|++
T Consensus 159 --~~Kip~TIlSRc--q~f~fkri~~~~I~~~L~~i~~---~E~---------------I~~e~~aL~~ia~~--a~Gs~ 214 (515)
T COG2812 159 --PQKIPNTILSRC--QRFDFKRLDLEEIAKHLAAILD---KEG---------------INIEEDALSLIARA--AEGSL 214 (515)
T ss_pred --cCcCchhhhhcc--ccccccCCCHHHHHHHHHHHHH---hcC---------------CccCHHHHHHHHHH--cCCCh
Confidence 567888999999 6799999999999999998875 111 21233344444444 35999
Q ss_pred HHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCCChHH-HHHHHHHhhhhhhc
Q 014789 266 NHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDCSILE-LYILVCLKRLEVKE 328 (418)
Q Consensus 266 r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~-~~iL~a~~~l~~~~ 328 (418)
|.++.++.+++.. +...||.+.|...+..+........+..+-..+ ..++..+-.+...|
T Consensus 215 RDalslLDq~i~~---~~~~It~~~v~~~lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G 275 (515)
T COG2812 215 RDALSLLDQAIAF---GEGEITLESVRDMLGLTDIEKLLSLLEAILKGDAKEALRLINELIEEG 275 (515)
T ss_pred hhHHHHHHHHHHc---cCCcccHHHHHHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999998877 447899999999888877666666555544443 33333333343333
No 63
>PRK06893 DNA replication initiation factor; Validated
Probab=99.69 E-value=1.4e-15 Score=136.24 Aligned_cols=191 Identities=16% Similarity=0.152 Sum_probs=118.5
Q ss_pred hcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHH
Q 014789 49 TEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQ 128 (418)
Q Consensus 49 ~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 128 (418)
.....+.++|+||||||||++++++++.+.... ..+.|++...... ...+
T Consensus 35 ~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~---~~~~y~~~~~~~~---~~~~------------------------ 84 (229)
T PRK06893 35 IDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQ---RTAIYIPLSKSQY---FSPA------------------------ 84 (229)
T ss_pred hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEeeHHHhhh---hhHH------------------------
Confidence 333456789999999999999999999887654 2345554321100 0000
Q ss_pred HHHHHHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccC-ceEEE
Q 014789 129 FMIEMLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFS-HRKLL 205 (418)
Q Consensus 129 ~l~~~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~-~~~i~ 205 (418)
+.+.+ ...-+|+|||++.+... .+..|+.+++.....+..+++++............+++.||+. ...+.
T Consensus 85 -~~~~~------~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~ 157 (229)
T PRK06893 85 -VLENL------EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQ 157 (229)
T ss_pred -HHhhc------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeee
Confidence 11111 13459999999998754 4567888887655433334344444333323345689999986 34678
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCC
Q 014789 206 FLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGF 285 (418)
Q Consensus 206 ~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~ 285 (418)
++|++.++..+|++.+... .++ .++++.+..++++ ..||+|.+...+......+.....+
T Consensus 158 l~~pd~e~~~~iL~~~a~~---~~l--------------~l~~~v~~~L~~~---~~~d~r~l~~~l~~l~~~~~~~~~~ 217 (229)
T PRK06893 158 LNDLTDEQKIIVLQRNAYQ---RGI--------------ELSDEVANFLLKR---LDRDMHTLFDALDLLDKASLQAQRK 217 (229)
T ss_pred CCCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHHHHHh---ccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999987530 011 1234444444443 3689999988887632111122347
Q ss_pred CChhhHHHHHh
Q 014789 286 LSFENFKTALS 296 (418)
Q Consensus 286 it~~~v~~a~~ 296 (418)
||.+.+++++.
T Consensus 218 it~~~v~~~L~ 228 (229)
T PRK06893 218 LTIPFVKEILG 228 (229)
T ss_pred CCHHHHHHHhc
Confidence 99999887653
No 64
>PRK08727 hypothetical protein; Validated
Probab=99.68 E-value=2e-15 Score=135.38 Aligned_cols=213 Identities=13% Similarity=0.121 Sum_probs=131.2
Q ss_pred CCCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHH
Q 014789 22 PNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCA 101 (418)
Q Consensus 22 ~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~ 101 (418)
+++.+++.++|-+..+..+.. ...+...+.++|+||+|||||+++.+++..+.... ..++|++.....
T Consensus 14 ~~~~f~~f~~~~~n~~~~~~~----~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~---~~~~y~~~~~~~----- 81 (233)
T PRK08727 14 SDQRFDSYIAAPDGLLAQLQA----LAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAG---RSSAYLPLQAAA----- 81 (233)
T ss_pred CcCChhhccCCcHHHHHHHHH----HHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEeHHHhh-----
Confidence 334443344444444443332 22344456799999999999999999999877654 455666532211
Q ss_pred HHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccCCCcEEEE
Q 014789 102 FKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVTSQAVVI 179 (418)
Q Consensus 102 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~~~~~lI 179 (418)
..+.. ..+.+. ..-+|+|||+|.+... .+..++.+++..... +..+|
T Consensus 82 -~~~~~----------------------~~~~l~------~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~--~~~vI 130 (233)
T PRK08727 82 -GRLRD----------------------ALEALE------GRSLVALDGLESIAGQREDEVALFDFHNRARAA--GITLL 130 (233)
T ss_pred -hhHHH----------------------HHHHHh------cCCEEEEeCcccccCChHHHHHHHHHHHHHHHc--CCeEE
Confidence 10100 111122 3458999999998754 456777777654332 34466
Q ss_pred EeccCCC-hHHHHHHHhhcccCc-eEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHH
Q 014789 180 GVSCRLD-ADQLLEKRVRSRFSH-RKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNT 257 (418)
Q Consensus 180 ~~s~~~~-~~~~l~~~v~sr~~~-~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (418)
++++... -...+.+.+.||+.. ..+.|+|++.+++.+|++.+... .++ .++++.+..++..
T Consensus 131 ~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~---~~l--------------~l~~e~~~~La~~ 193 (233)
T PRK08727 131 YTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQR---RGL--------------ALDEAAIDWLLTH 193 (233)
T ss_pred EECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHHHHHh
Confidence 6666532 223468999999753 47899999999999999987531 011 1234444444443
Q ss_pred HhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhc
Q 014789 258 LVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSN 297 (418)
Q Consensus 258 ~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~ 297 (418)
..||+|.+++++......+......||.+.+++.+..
T Consensus 194 ---~~rd~r~~l~~L~~l~~~~~~~~~~it~~~~~~~l~~ 230 (233)
T PRK08727 194 ---GERELAGLVALLDRLDRESLAAKRRVTVPFLRRVLEE 230 (233)
T ss_pred ---CCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhh
Confidence 3599999988887654322223447999888877643
No 65
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.68 E-value=5.8e-15 Score=144.15 Aligned_cols=231 Identities=14% Similarity=0.272 Sum_probs=137.1
Q ss_pred hcCCCCccCCCCCChhhhHHHHHHHHHHHHhcC-CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC
Q 014789 19 LCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEA-CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD 97 (418)
Q Consensus 19 ~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~-~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~ 97 (418)
.+++.|.+++.++|-..+.. . ........++ ..++++||||+|+|||++++++++.+....+. ..++|+++.
T Consensus 97 ~l~~~~tFdnFv~g~~n~~a-~-~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~-~~v~yi~~~---- 169 (440)
T PRK14088 97 PLNPDYTFENFVVGPGNSFA-Y-HAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPD-LRVMYITSE---- 169 (440)
T ss_pred CCCCCCcccccccCCchHHH-H-HHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCC-CeEEEEEHH----
Confidence 46778888656667554432 2 2222323322 25689999999999999999999998765432 567888763
Q ss_pred hHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccCCCc
Q 014789 98 DCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVTSQ 175 (418)
Q Consensus 98 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~~~ 175 (418)
.++.++...+... +.. .+.+.+. ..+-+|+|||++.+... .|..++.+++...... .
T Consensus 170 --~f~~~~~~~~~~~---------~~~----~f~~~~~-----~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~-k 228 (440)
T PRK14088 170 --KFLNDLVDSMKEG---------KLN----EFREKYR-----KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSG-K 228 (440)
T ss_pred --HHHHHHHHHHhcc---------cHH----HHHHHHH-----hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcC-C
Confidence 3445554444211 111 1222221 13569999999998754 3556666666544332 3
Q ss_pred EEEEEeccCCChHHHHHHHhhcccC-ceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHH
Q 014789 176 AVVIGVSCRLDADQLLEKRVRSRFS-HRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEI 254 (418)
Q Consensus 176 ~~lI~~s~~~~~~~~l~~~v~sr~~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (418)
.+++++.........+.+++.|||. ...+.+.||+.+...+|++.++... ... ++++.+..+
T Consensus 229 ~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~-~~~----------------l~~ev~~~I 291 (440)
T PRK14088 229 QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIE-HGE----------------LPEEVLNFV 291 (440)
T ss_pred eEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhc-CCC----------------CCHHHHHHH
Confidence 3344333343334568899999996 4468899999999999999987511 011 223322233
Q ss_pred HHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhc
Q 014789 255 VNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSN 297 (418)
Q Consensus 255 ~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~ 297 (418)
+.. ..||+|.+...+.+....+......||.+.+.+++..
T Consensus 292 a~~---~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~ 331 (440)
T PRK14088 292 AEN---VDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKD 331 (440)
T ss_pred Hhc---cccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 322 2467777666665543333333345666666555544
No 66
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=5.2e-15 Score=145.93 Aligned_cols=216 Identities=15% Similarity=0.187 Sum_probs=137.2
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCC-----------------CeEEEEE
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPD-----------------TISVIKL 90 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~-----------------~~~~v~i 90 (418)
.++|.+...+.|..++. .+. ++.++|+||||||||++++.+++.+....+. ...++.+
T Consensus 15 dvvGq~~v~~~L~~~i~----~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el 90 (504)
T PRK14963 15 EVVGQEHVKEVLLAALR----QGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEI 90 (504)
T ss_pred HhcChHHHHHHHHHHHH----cCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEe
Confidence 57899988777777654 344 4556999999999999999999998753211 0112222
Q ss_pred ccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhc
Q 014789 91 NGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ 170 (418)
Q Consensus 91 n~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~ 170 (418)
++.. ..+.+. .+.+.+.+......+.+.||||||+|.+.... +..|++..+
T Consensus 91 ~~~~-------------------------~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a---~naLLk~LE 141 (504)
T PRK14963 91 DAAS-------------------------NNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSA---FNALLKTLE 141 (504)
T ss_pred cccc-------------------------cCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHH---HHHHHHHHH
Confidence 2211 111111 22233333332233467899999999886543 344444444
Q ss_pred cCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChh
Q 014789 171 SVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGR 250 (418)
Q Consensus 171 ~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (418)
.....+++|++++. ...+.+.+.||+ ..+.|.|++.+++.+.+...+.- .++ .+++++
T Consensus 142 ep~~~t~~Il~t~~---~~kl~~~I~SRc--~~~~f~~ls~~el~~~L~~i~~~---egi--------------~i~~~A 199 (504)
T PRK14963 142 EPPEHVIFILATTE---PEKMPPTILSRT--QHFRFRRLTEEEIAGKLRRLLEA---EGR--------------EAEPEA 199 (504)
T ss_pred hCCCCEEEEEEcCC---hhhCChHHhcce--EEEEecCCCHHHHHHHHHHHHHH---cCC--------------CCCHHH
Confidence 44456777777765 456778899998 57999999999999999998641 111 123333
Q ss_pred HHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhh
Q 014789 251 FKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLEC 306 (418)
Q Consensus 251 ~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~ 306 (418)
+..++. . ..||+|.+++.+..+... ...||.++|.+.+.....+.+.+.
T Consensus 200 l~~ia~-~--s~GdlR~aln~Lekl~~~----~~~It~~~V~~~l~~~~~~~if~L 248 (504)
T PRK14963 200 LQLVAR-L--ADGAMRDAESLLERLLAL----GTPVTRKQVEEALGLPPQERLRGI 248 (504)
T ss_pred HHHHHH-H--cCCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHCCCcHHHHHHH
Confidence 333333 2 359999999999886543 236999998887765554444333
No 67
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.2e-14 Score=142.03 Aligned_cols=222 Identities=14% Similarity=0.156 Sum_probs=141.5
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCC-------------------CeEE
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPD-------------------TISV 87 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~-------------------~~~~ 87 (418)
+.++|.+...+.|...+ ..+. +++++++||+|+|||++++.+++.+....+. .+.+
T Consensus 17 ~diiGq~~~v~~L~~~i----~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~ 92 (451)
T PRK06305 17 SEILGQDAVVAVLKNAL----RFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDV 92 (451)
T ss_pred HHhcCcHHHHHHHHHHH----HcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCce
Confidence 36889998888776665 3334 6678999999999999999999988653210 0112
Q ss_pred EEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHh
Q 014789 88 IKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLD 167 (418)
Q Consensus 88 v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~ 167 (418)
+.+++.... +.++ ...+.+.+......+.+.|+||||+|.+....++.|...
T Consensus 93 ~~i~g~~~~-------------------------gid~-ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~-- 144 (451)
T PRK06305 93 LEIDGASHR-------------------------GIED-IRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKT-- 144 (451)
T ss_pred EEeeccccC-------------------------CHHH-HHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHH--
Confidence 222221111 1111 111222222221234678999999999976555544444
Q ss_pred hhccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhC
Q 014789 168 AMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILA 247 (418)
Q Consensus 168 ~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (418)
.+.....+++|++++. ...+.+.++||+ ..+.|.+++.+++.+++...+.- .+. -++
T Consensus 145 -lEep~~~~~~Il~t~~---~~kl~~tI~sRc--~~v~f~~l~~~el~~~L~~~~~~---eg~--------------~i~ 201 (451)
T PRK06305 145 -LEEPPQHVKFFLATTE---IHKIPGTILSRC--QKMHLKRIPEETIIDKLALIAKQ---EGI--------------ETS 201 (451)
T ss_pred -hhcCCCCceEEEEeCC---hHhcchHHHHhc--eEEeCCCCCHHHHHHHHHHHHHH---cCC--------------CCC
Confidence 4444467788888865 467888999999 57999999999999999887540 010 123
Q ss_pred ChhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCC
Q 014789 248 DGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDC 310 (418)
Q Consensus 248 ~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L 310 (418)
++++..++.. ..||+|.+++.+....... ...|+.++|.+++.....+.+.+.+..+
T Consensus 202 ~~al~~L~~~---s~gdlr~a~~~Lekl~~~~---~~~It~~~V~~l~~~~~~~~vf~L~~ai 258 (451)
T PRK06305 202 REALLPIARA---AQGSLRDAESLYDYVVGLF---PKSLDPDSVAKALGLLSQDSLYTLDEAI 258 (451)
T ss_pred HHHHHHHHHH---cCCCHHHHHHHHHHHHHhc---cCCcCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3434444432 3599999999998765442 2459999998877665555444444433
No 68
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.67 E-value=4.8e-15 Score=144.85 Aligned_cols=292 Identities=9% Similarity=0.131 Sum_probs=175.0
Q ss_pred CCccCCCCCChhhhHHHHHHHHHHHHhcC--CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHH
Q 014789 23 NFVVKHLSDSPDSNYSKLKFLVSSSVTEA--CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCC 100 (418)
Q Consensus 23 ~~~~~~~l~gr~~e~~~l~~~l~~~~~~~--~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~ 100 (418)
.+.+++.++|.+.+. ..........+. ..++++|+|++|+|||++++++++.+....+ ...++|+++. .
T Consensus 111 ~~tFdnFv~g~~n~~--A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~-~~~v~yv~~~------~ 181 (450)
T PRK14087 111 ENTFENFVIGSSNEQ--AFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFS-DLKVSYMSGD------E 181 (450)
T ss_pred ccchhcccCCCcHHH--HHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHH------H
Confidence 355545566765542 123333333332 2467999999999999999999998875432 2667777753 3
Q ss_pred HHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccCCCcEEE
Q 014789 101 AFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVTSQAVV 178 (418)
Q Consensus 101 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~~~~~l 178 (418)
++..+...+.... ...+.+.+.+. ..-+|+|||++.+..+ .++.|+.+++....... .+
T Consensus 182 f~~~~~~~l~~~~-----------~~~~~~~~~~~------~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k--~i 242 (450)
T PRK14087 182 FARKAVDILQKTH-----------KEIEQFKNEIC------QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDK--QL 242 (450)
T ss_pred HHHHHHHHHHHhh-----------hHHHHHHHHhc------cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCC--cE
Confidence 4555555553210 11122222222 3458999999999754 67889999887665434 34
Q ss_pred EEeccCCC-hHHHHHHHhhcccC-ceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHH
Q 014789 179 IGVSCRLD-ADQLLEKRVRSRFS-HRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVN 256 (418)
Q Consensus 179 I~~s~~~~-~~~~l~~~v~sr~~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (418)
|.+++..+ ....+++++.|||. .-.+.+.|++.+++.+||+.++... ++ ...++++++..++.
T Consensus 243 Iltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~---gl------------~~~l~~evl~~Ia~ 307 (450)
T PRK14087 243 FFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQ---NI------------KQEVTEEAINFISN 307 (450)
T ss_pred EEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhc---CC------------CCCCCHHHHHHHHH
Confidence 55555432 34467899999997 4568899999999999999998521 10 00133443333333
Q ss_pred HHhccccCHHHHHHHHHHHhhccccc--CCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHHhhhhhhcCCcccH
Q 014789 257 TLVNLDSTVNHLLRFLFLAVSYMDLE--SGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCLKRLEVKEQNSYNF 334 (418)
Q Consensus 257 ~~~~~~gd~r~~~~~l~~a~~~a~~~--~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~~~l~~~~~~~~~~ 334 (418)
. ..||+|.+..+|.+....+... ...||.+.+.+++..+..... ..++.. .|+.+++. .-.++.
T Consensus 308 ~---~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~~~~~~----~~~t~~--~I~~~Va~-----~~~i~~ 373 (450)
T PRK14087 308 Y---YSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDIPTSKL----GILNVK--KIKEVVSE-----KYGISV 373 (450)
T ss_pred c---cCCCHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhcccccc----CCCCHH--HHHHHHHH-----HcCCCH
Confidence 2 4699999999998875443322 367999999998876532111 112221 22222221 123444
Q ss_pred HHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhCCcceeecC
Q 014789 335 NSVMKEYKSIHDSFQTSDYYSRNVCLRAFEHLLQRELICFTDN 377 (418)
Q Consensus 335 ~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~~ 377 (418)
.++.. ++....-...|++.+-.+..|.++.+-.+...
T Consensus 374 ~dl~s------~~R~~~i~~~RqiamyL~r~~t~~sl~~IG~~ 410 (450)
T PRK14087 374 NAIDG------KARSKSIVTARHIAMYLTKEILNHTLAQIGEE 410 (450)
T ss_pred HHHhC------CCCCccccHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 44411 11111223567787788888888877665443
No 69
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.67 E-value=4.1e-15 Score=131.83 Aligned_cols=208 Identities=19% Similarity=0.251 Sum_probs=124.1
Q ss_pred cCCCCccCCCCCChhhhHHHHHHHHHHHHhcC--CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC
Q 014789 20 CDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEA--CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD 97 (418)
Q Consensus 20 ~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~--~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~ 97 (418)
++|.|.+++.++|...+... ........+. ..++++||||+|+|||+++++++..+....+. ..++|+++..
T Consensus 1 ln~~~tFdnfv~g~~N~~a~--~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~-~~v~y~~~~~--- 74 (219)
T PF00308_consen 1 LNPKYTFDNFVVGESNELAY--AAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPG-KRVVYLSAEE--- 74 (219)
T ss_dssp S-TT-SCCCS--TTTTHHHH--HHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTT-S-EEEEEHHH---
T ss_pred CCCCCccccCCcCCcHHHHH--HHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcccc-ccceeecHHH---
Confidence 46788885555675544221 1222222322 34679999999999999999999998876543 6788887633
Q ss_pred hHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccCCCc
Q 014789 98 DCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVTSQ 175 (418)
Q Consensus 98 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~~~ 175 (418)
+...+...+... ....+.+.+... -+|+||++|.+... .|+.|+.+++.....+.+
T Consensus 75 ---f~~~~~~~~~~~-------------~~~~~~~~~~~~------DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~ 132 (219)
T PF00308_consen 75 ---FIREFADALRDG-------------EIEEFKDRLRSA------DLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQ 132 (219)
T ss_dssp ---HHHHHHHHHHTT-------------SHHHHHHHHCTS------SEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSE
T ss_pred ---HHHHHHHHHHcc-------------cchhhhhhhhcC------CEEEEecchhhcCchHHHHHHHHHHHHHHhhCCe
Confidence 344444444221 112234444443 49999999999876 488999999877655454
Q ss_pred EEEEEeccCCChHHHHHHHhhcccC-ceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHH
Q 014789 176 AVVIGVSCRLDADQLLEKRVRSRFS-HRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEI 254 (418)
Q Consensus 176 ~~lI~~s~~~~~~~~l~~~v~sr~~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (418)
+++ .......-...+.+++.||+. .-.+.+.|++.++..+|++.++.. .++ .++++.+..+
T Consensus 133 li~-ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~---~~~--------------~l~~~v~~~l 194 (219)
T PF00308_consen 133 LIL-TSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE---RGI--------------ELPEEVIEYL 194 (219)
T ss_dssp EEE-EESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH---TT----------------S-HHHHHHH
T ss_pred EEE-EeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH---hCC--------------CCcHHHHHHH
Confidence 333 332222223456889999997 456889999999999999998750 010 1334434444
Q ss_pred HHHHhccccCHHHHHHHHHHHh
Q 014789 255 VNTLVNLDSTVNHLLRFLFLAV 276 (418)
Q Consensus 255 ~~~~~~~~gd~r~~~~~l~~a~ 276 (418)
+.+ ..+|+|.+..++.+-.
T Consensus 195 ~~~---~~~~~r~L~~~l~~l~ 213 (219)
T PF00308_consen 195 ARR---FRRDVRELEGALNRLD 213 (219)
T ss_dssp HHH---TTSSHHHHHHHHHHHH
T ss_pred HHh---hcCCHHHHHHHHHHHH
Confidence 443 3579998887776543
No 70
>CHL00176 ftsH cell division protein; Validated
Probab=99.67 E-value=1.6e-15 Score=153.04 Aligned_cols=216 Identities=17% Similarity=0.241 Sum_probs=138.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.+.|.++..+++.+.+... +. ..+.+++|+||||||||+++++++.... ..+++++|......
T Consensus 183 ~dv~G~~~~k~~l~eiv~~l-k~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~------~p~i~is~s~f~~~ 255 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFL-KKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE------VPFFSISGSEFVEM 255 (638)
T ss_pred HhccChHHHHHHHHHHHHHH-hCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCeeeccHHHHHHH
Confidence 45789888877777765442 22 2266899999999999999999988763 33566766443211
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----------chhHHHHHHh
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----------KQRLLYSLLD 167 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----------~~~~L~~l~~ 167 (418)
+ . + .+ ......+++... ...|.||+|||+|.+... .+..++.|+.
T Consensus 256 ---~----~--g----------~~-~~~vr~lF~~A~----~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~ 311 (638)
T CHL00176 256 ---F----V--G----------VG-AARVRDLFKKAK----ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLT 311 (638)
T ss_pred ---h----h--h----------hh-HHHHHHHHHHHh----cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHh
Confidence 0 0 0 00 011122222222 246899999999999632 3457777776
Q ss_pred hhcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH
Q 014789 168 AMQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK 243 (418)
Q Consensus 168 ~~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 243 (418)
.... ...++++|++||. ++.+++++.+ ||. +.+.+++|+.++..+|++..+.-. .
T Consensus 312 ~~dg~~~~~~ViVIaaTN~---~~~LD~ALlRpGRFd-~~I~v~lPd~~~R~~IL~~~l~~~---~-------------- 370 (638)
T CHL00176 312 EMDGFKGNKGVIVIAATNR---VDILDAALLRPGRFD-RQITVSLPDREGRLDILKVHARNK---K-------------- 370 (638)
T ss_pred hhccccCCCCeeEEEecCc---hHhhhhhhhccccCc-eEEEECCCCHHHHHHHHHHHHhhc---c--------------
Confidence 5543 3457899999988 5567888875 676 679999999999999999987510 0
Q ss_pred HHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcc-cccCCCCChhhHHHHHhcc
Q 014789 244 NILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYM-DLESGFLSFENFKTALSNS 298 (418)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a-~~~~~~it~~~v~~a~~~~ 298 (418)
...+..+..++....+ .+.+.+.+++..|...+ ..+...|+.+|+.+|+..+
T Consensus 371 -~~~d~~l~~lA~~t~G--~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 371 -LSPDVSLELIARRTPG--FSGADLANLLNEAAILTARRKKATITMKEIDTAIDRV 423 (638)
T ss_pred -cchhHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 0112223333332222 25555556666554332 3466789999999998765
No 71
>CHL00181 cbbX CbbX; Provisional
Probab=99.67 E-value=4.9e-15 Score=136.41 Aligned_cols=167 Identities=14% Similarity=0.094 Sum_probs=104.7
Q ss_pred CCCChhhhHHHHHHHHHHHH----h-------cCCCceEEEECCCCCchHHHHHHHHHHHhhhCC-CCeEEEEEccccCC
Q 014789 29 LSDSPDSNYSKLKFLVSSSV----T-------EACNNSILLLGPRGSGKIAVLELILTDLLLEYP-DTISVIKLNGLLHS 96 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~----~-------~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~-~~~~~v~in~~~~~ 96 (418)
.++|.++..++|.+...... . ...+.+++|+||||||||++++.+++.+..... ..-.++++++..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~-- 101 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD-- 101 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH--
Confidence 47777776666655532211 1 113567999999999999999999998765331 112245555321
Q ss_pred ChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc------chhHHHHHHhhhc
Q 014789 97 DDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG------KQRLLYSLLDAMQ 170 (418)
Q Consensus 97 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~------~~~~L~~l~~~~~ 170 (418)
+.. .+.. .+. ....+.+... .+.||+|||+|.+... ..+....|+...+
T Consensus 102 ----l~~----~~~g---------~~~----~~~~~~l~~a----~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me 156 (287)
T CHL00181 102 ----LVG----QYIG---------HTA----PKTKEVLKKA----MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVME 156 (287)
T ss_pred ----HHH----HHhc---------cch----HHHHHHHHHc----cCCEEEEEccchhccCCCccchHHHHHHHHHHHHh
Confidence 111 1100 000 1122333332 2359999999998432 3455666666655
Q ss_pred cCCCcEEEEEeccCCChHHH--HHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 171 SVTSQAVVIGVSCRLDADQL--LEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 171 ~~~~~~~lI~~s~~~~~~~~--l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
....++++|++++...+... ++|.+.|||. ..|.|+||+.+|+.+|+...+.
T Consensus 157 ~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~-~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 157 NQRDDLVVIFAGYKDRMDKFYESNPGLSSRIA-NHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred cCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCC-ceEEcCCcCHHHHHHHHHHHHH
Confidence 55567888888875432222 3589999996 5799999999999999999875
No 72
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=9.4e-15 Score=141.40 Aligned_cols=238 Identities=11% Similarity=0.121 Sum_probs=141.0
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCC-CeEEE---EEccccCCChHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPD-TISVI---KLNGLLHSDDCCAF 102 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~-~~~~v---~in~~~~~~~~~~~ 102 (418)
+.++|.+...+.|...+ .++. ++.++++||||+|||++++.+++.+....+. ...+. .-.|..+. ..
T Consensus 16 ~eiiGq~~~~~~L~~~~----~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~----~c 87 (397)
T PRK14955 16 ADITAQEHITRTIQNSL----RMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECE----SC 87 (397)
T ss_pred hhccChHHHHHHHHHHH----HhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCH----HH
Confidence 35789888877766655 4444 5668899999999999999999998753210 00000 00121111 11
Q ss_pred HHHHHHHHHhhhccccc--CCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEE
Q 014789 103 KEIARQLCMEHQLLFSK--MASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIG 180 (418)
Q Consensus 103 ~~i~~~l~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~ 180 (418)
+.+........ ..+.. ..+.++. ..+.+.+......+...|+||||+|.+....++.|...++ ......++|+
T Consensus 88 ~~~~~~~~~n~-~~~~~~~~~~id~I-r~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LE---ep~~~t~~Il 162 (397)
T PRK14955 88 RDFDAGTSLNI-SEFDAASNNSVDDI-RLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLE---EPPPHAIFIF 162 (397)
T ss_pred HHHhcCCCCCe-EeecccccCCHHHH-HHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHh---cCCCCeEEEE
Confidence 11111000000 00000 0112222 2233333322334567899999999998755555555444 3335667777
Q ss_pred eccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhc
Q 014789 181 VSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVN 260 (418)
Q Consensus 181 ~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (418)
+++. ...+.+.++||+ ..+.|.|++.+++.+.+...+... + ..++++++..++..
T Consensus 163 ~t~~---~~kl~~tl~sR~--~~v~f~~l~~~ei~~~l~~~~~~~---g--------------~~i~~~al~~l~~~--- 217 (397)
T PRK14955 163 ATTE---LHKIPATIASRC--QRFNFKRIPLEEIQQQLQGICEAE---G--------------ISVDADALQLIGRK--- 217 (397)
T ss_pred EeCC---hHHhHHHHHHHH--HHhhcCCCCHHHHHHHHHHHHHHc---C--------------CCCCHHHHHHHHHH---
Confidence 7755 467778899999 468999999999999999876410 0 01344444444432
Q ss_pred cccCHHHHHHHHHHHhhccc--ccCCCCChhhHHHHHhccCCCch
Q 014789 261 LDSTVNHLLRFLFLAVSYMD--LESGFLSFENFKTALSNSHRQPK 303 (418)
Q Consensus 261 ~~gd~r~~~~~l~~a~~~a~--~~~~~it~~~v~~a~~~~~~~~~ 303 (418)
..||+|.+++.+.....++. .....|+.++|.+.+.....+..
T Consensus 218 s~g~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v~~~~~~~v 262 (397)
T PRK14955 218 AQGSMRDAQSILDQVIAFSVESEGEGSIRYDKVAELLNYIDDEHF 262 (397)
T ss_pred cCCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHHCCCCHHHH
Confidence 35899999999988766653 23458999998887655444333
No 73
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.1e-15 Score=142.38 Aligned_cols=168 Identities=19% Similarity=0.306 Sum_probs=111.0
Q ss_pred CCCChhhh---HHHHHHHHHHHH-----hcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHH
Q 014789 29 LSDSPDSN---YSKLKFLVSSSV-----TEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCC 100 (418)
Q Consensus 29 ~l~gr~~e---~~~l~~~l~~~~-----~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~ 100 (418)
..-|.++. +++|.++|++-- .++-|..+||+||||||||.++++++-+.. +.+.+..|..+..-
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~------VPFF~~sGSEFdEm-- 376 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG------VPFFYASGSEFDEM-- 376 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC------CCeEeccccchhhh--
Confidence 45566654 555555554321 112278999999999999999999986543 45567776555421
Q ss_pred HHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc----c----hhHHHHHHhhhcc-
Q 014789 101 AFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG----K----QRLLYSLLDAMQS- 171 (418)
Q Consensus 101 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~----~----~~~L~~l~~~~~~- 171 (418)
++ .. + ..++.+++... +...|+||+|||+|....+ . ..-|.+|+-.+..
T Consensus 377 ~V-----Gv------------G----ArRVRdLF~aA-k~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF 434 (752)
T KOG0734|consen 377 FV-----GV------------G----ARRVRDLFAAA-KARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGF 434 (752)
T ss_pred hh-----cc------------c----HHHHHHHHHHH-HhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCc
Confidence 11 11 0 11233333332 2347999999999999875 1 1345555533332
Q ss_pred -CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc-CCCCCCC
Q 014789 172 -VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS-LPVDSSL 230 (418)
Q Consensus 172 -~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~-~~~~~~~ 230 (418)
.+..++|||+||. ++.|++++.+ ||. ++|.++.++..-..+||+..+. ++.+..+
T Consensus 435 ~qNeGiIvigATNf---pe~LD~AL~RPGRFD-~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~V 493 (752)
T KOG0734|consen 435 KQNEGIIVIGATNF---PEALDKALTRPGRFD-RHVTVPLPDVRGRTEILKLYLSKIPLDEDV 493 (752)
T ss_pred CcCCceEEEeccCC---hhhhhHHhcCCCccc-eeEecCCCCcccHHHHHHHHHhcCCcccCC
Confidence 3468999999987 7788999875 786 7899999999999999999987 4444333
No 74
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=2.2e-14 Score=143.16 Aligned_cols=227 Identities=17% Similarity=0.185 Sum_probs=137.4
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++|.+...+.|...+.. +.-++.++++||+|+|||++++.+++.+....+... ..|..+.+ .+.+...
T Consensus 17 diiGqe~iv~~L~~~i~~---~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~----~pC~~C~~----C~~i~~~ 85 (563)
T PRK06647 17 SLEGQDFVVETLKHSIES---NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP----MPCGECSS----CKSIDND 85 (563)
T ss_pred HccCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC----CCCccchH----HHHHHcC
Confidence 588999988887777643 234666889999999999999999999875421100 01111110 0111110
Q ss_pred HHHhhhccccc--CCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 109 LCMEHQLLFSK--MASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 109 l~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
-.... ..+.+ ..+.++.. .+.+.+......+.+.|+||||+|.|....++.| +...+..+..+++|++++.
T Consensus 86 ~~~dv-~~idgas~~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naL---LK~LEepp~~~vfI~~tte-- 158 (563)
T PRK06647 86 NSLDV-IEIDGASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNAL---LKTIEEPPPYIVFIFATTE-- 158 (563)
T ss_pred CCCCe-EEecCcccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHH---HHhhccCCCCEEEEEecCC--
Confidence 00000 00000 01112221 2222222222235678999999999976544444 4444445577888888866
Q ss_pred hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHH
Q 014789 187 ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVN 266 (418)
Q Consensus 187 ~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r 266 (418)
...+.+.++||+ ..+.|.+++.+++.+++...+.- .++ .++++++..+++ . ..||+|
T Consensus 159 -~~kL~~tI~SRc--~~~~f~~l~~~el~~~L~~i~~~---egi--------------~id~eAl~lLa~-~--s~GdlR 215 (563)
T PRK06647 159 -VHKLPATIKSRC--QHFNFRLLSLEKIYNMLKKVCLE---DQI--------------KYEDEALKWIAY-K--STGSVR 215 (563)
T ss_pred -hHHhHHHHHHhc--eEEEecCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHHHHH-H--cCCCHH
Confidence 467888999999 57899999999999999887631 111 123343433333 2 359999
Q ss_pred HHHHHHHHHhhcccccCCCCChhhHHHHHhccC
Q 014789 267 HLLRFLFLAVSYMDLESGFLSFENFKTALSNSH 299 (418)
Q Consensus 267 ~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~ 299 (418)
.++..+.+++.. ....|+.++|.+++....
T Consensus 216 ~alslLdklis~---~~~~It~e~V~~llg~~~ 245 (563)
T PRK06647 216 DAYTLFDQVVSF---SDSDITLEQIRSKMGLTG 245 (563)
T ss_pred HHHHHHHHHHhh---cCCCCCHHHHHHHhCCCC
Confidence 999999887655 235689888887665443
No 75
>PRK04195 replication factor C large subunit; Provisional
Probab=99.65 E-value=4.5e-15 Score=147.38 Aligned_cols=206 Identities=18% Similarity=0.183 Sum_probs=134.9
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++|+++..+.|..++.....+..+.+++|+||||+|||++++.+++.+. +.++.+|+....+. ..+..+...
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~------~~~ielnasd~r~~-~~i~~~i~~ 87 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG------WEVIELNASDQRTA-DVIERVAGE 87 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC------CCEEEEcccccccH-HHHHHHHHH
Confidence 48999999999999998887666688999999999999999999999874 45688887655432 223333222
Q ss_pred HHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-chhHHHHHHhhhccCCCcEEEEEeccCCCh
Q 014789 109 LCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-KQRLLYSLLDAMQSVTSQAVVIGVSCRLDA 187 (418)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~ 187 (418)
..... + + + ...+.||||||+|.+... ....+..|++....... .+|+++|...
T Consensus 88 ~~~~~--------s-------l---~-----~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~--~iIli~n~~~- 141 (482)
T PRK04195 88 AATSG--------S-------L---F-----GARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQ--PIILTANDPY- 141 (482)
T ss_pred hhccC--------c-------c---c-----CCCCeEEEEecCcccccccchhHHHHHHHHHHcCCC--CEEEeccCcc-
Confidence 21100 0 0 0 014679999999999763 22334444444443333 3555666532
Q ss_pred HHHHHH-HhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHH
Q 014789 188 DQLLEK-RVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVN 266 (418)
Q Consensus 188 ~~~l~~-~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r 266 (418)
.+.+ .+++++ ..|.|+|++.+++..++...+.. .++ .++++++..++.. ..||+|
T Consensus 142 --~~~~k~Lrsr~--~~I~f~~~~~~~i~~~L~~i~~~---egi--------------~i~~eaL~~Ia~~---s~GDlR 197 (482)
T PRK04195 142 --DPSLRELRNAC--LMIEFKRLSTRSIVPVLKRICRK---EGI--------------ECDDEALKEIAER---SGGDLR 197 (482)
T ss_pred --ccchhhHhccc--eEEEecCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHHHHHH---cCCCHH
Confidence 2223 567777 57999999999999999887641 111 1234444444432 369999
Q ss_pred HHHHHHHHHhhcccccCCCCChhhHHHHH
Q 014789 267 HLLRFLFLAVSYMDLESGFLSFENFKTAL 295 (418)
Q Consensus 267 ~~~~~l~~a~~~a~~~~~~it~~~v~~a~ 295 (418)
.+++.+... ..+...++.+++....
T Consensus 198 ~ain~Lq~~----a~~~~~it~~~v~~~~ 222 (482)
T PRK04195 198 SAINDLQAI----AEGYGKLTLEDVKTLG 222 (482)
T ss_pred HHHHHHHHH----hcCCCCCcHHHHHHhh
Confidence 999988652 2255678888887655
No 76
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.65 E-value=2e-15 Score=150.46 Aligned_cols=216 Identities=17% Similarity=0.251 Sum_probs=133.7
Q ss_pred CCCChhhhHHHHHHHHHHHHh---------cCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVT---------EACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~---------~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
.+.|.++..+++.+.+.. ++ ...+.+++|+||||||||++++.++.... ..++++++....+
T Consensus 56 di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~------~~~~~i~~~~~~~-- 126 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG------VPFFSISGSDFVE-- 126 (495)
T ss_pred HhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC------CCeeeccHHHHHH--
Confidence 578888887777776653 22 23467899999999999999999988753 3345555432110
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc-----------hhHHHHHHhh
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK-----------QRLLYSLLDA 168 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~-----------~~~L~~l~~~ 168 (418)
... +.+ ......+++.... ..|.||+|||+|.+.... ...+..++..
T Consensus 127 --------~~~---------g~~-~~~l~~~f~~a~~----~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~ 184 (495)
T TIGR01241 127 --------MFV---------GVG-ASRVRDLFEQAKK----NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVE 184 (495)
T ss_pred --------HHh---------ccc-HHHHHHHHHHHHh----cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhh
Confidence 000 000 1122223333222 357899999999987541 2345555544
Q ss_pred hcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH
Q 014789 169 MQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKN 244 (418)
Q Consensus 169 ~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 244 (418)
... ...+++||++||. ++.+++.+.+ ||. +.|.+++++.++..+|++..+.-. .+.
T Consensus 185 ~d~~~~~~~v~vI~aTn~---~~~ld~al~r~gRfd-~~i~i~~Pd~~~R~~il~~~l~~~---~~~------------- 244 (495)
T TIGR01241 185 MDGFGTNTGVIVIAATNR---PDVLDPALLRPGRFD-RQVVVDLPDIKGREEILKVHAKNK---KLA------------- 244 (495)
T ss_pred hccccCCCCeEEEEecCC---hhhcCHHHhcCCcce-EEEEcCCCCHHHHHHHHHHHHhcC---CCC-------------
Confidence 432 2357899999988 5678888876 776 679999999999999999887511 010
Q ss_pred HhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcc-cccCCCCChhhHHHHHhccC
Q 014789 245 ILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYM-DLESGFLSFENFKTALSNSH 299 (418)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a-~~~~~~it~~~v~~a~~~~~ 299 (418)
.+..+..++....+.+ ...+..++..|...+ ..+...|+.+|+..|+....
T Consensus 245 --~~~~l~~la~~t~G~s--gadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 245 --PDVDLKAVARRTPGFS--GADLANLLNEAALLAARKNKTEITMNDIEEAIDRVI 296 (495)
T ss_pred --cchhHHHHHHhCCCCC--HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 1122334444433322 233444454443332 23666899999999988653
No 77
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.65 E-value=1.7e-14 Score=140.50 Aligned_cols=289 Identities=17% Similarity=0.237 Sum_probs=166.4
Q ss_pred hcCCCCccCCCCCChhhhHHHHHHHHHHHHhc------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcc
Q 014789 19 LCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTE------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNG 92 (418)
Q Consensus 19 ~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~ 92 (418)
-++|++.+++.++|...+.. .......... ...++++||||+|+|||++++++++.+.... ..++|+++
T Consensus 103 ~l~~~~tFdnFv~g~~N~~a--~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~---~~v~yi~~ 177 (445)
T PRK12422 103 ELDPLMTFANFLVTPENDLP--HRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESG---GKILYVRS 177 (445)
T ss_pred CCCccccccceeeCCcHHHH--HHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEeeH
Confidence 46778888656667665532 1222222221 1246899999999999999999999887543 55677764
Q ss_pred ccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhc
Q 014789 93 LLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQ 170 (418)
Q Consensus 93 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~ 170 (418)
.. +...+...+... . .+.+...+. ..-+++|||++.+... .|+.++.+++...
T Consensus 178 ~~------f~~~~~~~l~~~---------~----~~~f~~~~~------~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~ 232 (445)
T PRK12422 178 EL------FTEHLVSAIRSG---------E----MQRFRQFYR------NVDALFIEDIEVFSGKGATQEEFFHTFNSLH 232 (445)
T ss_pred HH------HHHHHHHHHhcc---------h----HHHHHHHcc------cCCEEEEcchhhhcCChhhHHHHHHHHHHHH
Confidence 32 233333333210 0 111222222 3559999999998764 5777888877544
Q ss_pred cCCCcEEEEEeccC-CChHHHHHHHhhcccC-ceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCC
Q 014789 171 SVTSQAVVIGVSCR-LDADQLLEKRVRSRFS-HRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILAD 248 (418)
Q Consensus 171 ~~~~~~~lI~~s~~-~~~~~~l~~~v~sr~~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (418)
... . .+|.+++. ......+++++.|||. ...+.+.|++.+++.+||+.++... ++ .+++
T Consensus 233 ~~~-k-~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~---~~--------------~l~~ 293 (445)
T PRK12422 233 TEG-K-LIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL---SI--------------RIEE 293 (445)
T ss_pred HCC-C-cEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc---CC--------------CCCH
Confidence 332 2 34444443 2334568899999996 3578899999999999999987511 11 1334
Q ss_pred hhHHHHHHHHhccccCHHHHHHHHHHHh---hcccccCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHHhhhh
Q 014789 249 GRFKEIVNTLVNLDSTVNHLLRFLFLAV---SYMDLESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCLKRLE 325 (418)
Q Consensus 249 ~~~~~~~~~~~~~~gd~r~~~~~l~~a~---~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~~~l~ 325 (418)
+.+..++.. .++|+|.+...+.... ..+......||.+.+++++......... ..++. ..|+.++++
T Consensus 294 evl~~la~~---~~~dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~~~~~---~~~t~--~~I~~~Va~-- 363 (445)
T PRK12422 294 TALDFLIEA---LSSNVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLEAAES---VRLTP--SKIIRAVAQ-- 363 (445)
T ss_pred HHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhhcccC---CCCCH--HHHHHHHHH--
Confidence 434444443 4689999887776652 3333344579999998888754221100 01222 122222221
Q ss_pred hhcCCcccHHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhCCcceee
Q 014789 326 VKEQNSYNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFEHLLQRELICFT 375 (418)
Q Consensus 326 ~~~~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~ 375 (418)
.-.++..++.. ++....-...|++.+-.+..|.++.+-.+.
T Consensus 364 ---~~~v~~~dl~s------~~R~~~i~~~Rqiamyl~r~~t~~s~~~IG 404 (445)
T PRK12422 364 ---YYGVSPESILG------RSQSREYVLPRQVAMYLCRQKLSLSYVKIG 404 (445)
T ss_pred ---HhCCCHHHHhc------CCCCcccccHHHHHHHHHHHhcCCCHHHHH
Confidence 12234444421 111112245677777777777777765543
No 78
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=6e-14 Score=140.91 Aligned_cols=235 Identities=11% Similarity=0.122 Sum_probs=139.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCC-eEEEE---EccccCCChHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDT-ISVIK---LNGLLHSDDCCAF 102 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~-~~~v~---in~~~~~~~~~~~ 102 (418)
+.++|.+...+.|.+.+ .++. +++++++||+|+|||++++.+++.+....+.. ..+.. -.|..+. ..
T Consensus 16 ~eivGQe~i~~~L~~~i----~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~----sC 87 (620)
T PRK14954 16 ADITAQEHITHTIQNSL----RMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECE----SC 87 (620)
T ss_pred HHhcCcHHHHHHHHHHH----HcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCH----HH
Confidence 35789888888766654 4444 66788999999999999999999987632100 00000 0121111 11
Q ss_pred HHHHHHHHHhhhcccc--cCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEE
Q 014789 103 KEIARQLCMEHQLLFS--KMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIG 180 (418)
Q Consensus 103 ~~i~~~l~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~ 180 (418)
+.+...-.... ..+. ...+.++.. .+.+.+......+...|+||||+|.+....++.|...++. .....++|+
T Consensus 88 ~~~~~g~~~n~-~~~d~~s~~~vd~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe---Pp~~tv~IL 162 (620)
T PRK14954 88 RDFDAGTSLNI-SEFDAASNNSVDDIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE---PPPHAIFIF 162 (620)
T ss_pred HHHhccCCCCe-EEecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC---CCCCeEEEE
Confidence 11111000000 0000 011122222 2233332222334677999999999977656666555554 335677888
Q ss_pred eccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhc
Q 014789 181 VSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVN 260 (418)
Q Consensus 181 ~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (418)
+++. ...+.+.++||+ ..+.|.+++.+++...+...+.. .+. -++++++..++..
T Consensus 163 ~t~~---~~kLl~TI~SRc--~~vef~~l~~~ei~~~L~~i~~~---egi--------------~I~~eal~~La~~--- 217 (620)
T PRK14954 163 ATTE---LHKIPATIASRC--QRFNFKRIPLDEIQSQLQMICRA---EGI--------------QIDADALQLIARK--- 217 (620)
T ss_pred EeCC---hhhhhHHHHhhc--eEEecCCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHHHHHH---
Confidence 7765 467888899999 67999999999999998887541 010 1334444444432
Q ss_pred cccCHHHHHHHHHHHhhccc--ccCCCCChhhHHHHHhccCC
Q 014789 261 LDSTVNHLLRFLFLAVSYMD--LESGFLSFENFKTALSNSHR 300 (418)
Q Consensus 261 ~~gd~r~~~~~l~~a~~~a~--~~~~~it~~~v~~a~~~~~~ 300 (418)
..||+|.+++.+.....++. .....|+.++|.+.+.....
T Consensus 218 s~Gdlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv~~~~e 259 (620)
T PRK14954 218 AQGSMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELLNYIDD 259 (620)
T ss_pred hCCCHHHHHHHHHHHHHhccccccCCccCHHHHHHHHcCCCH
Confidence 35899999999988766641 23557898888776654433
No 79
>PRK05642 DNA replication initiation factor; Validated
Probab=99.63 E-value=9.2e-15 Score=131.16 Aligned_cols=216 Identities=16% Similarity=0.105 Sum_probs=131.0
Q ss_pred cCCCCccCCCCCChhhhHHHHHHHHHHHHhc---CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCC
Q 014789 20 CDPNFVVKHLSDSPDSNYSKLKFLVSSSVTE---ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHS 96 (418)
Q Consensus 20 ~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~---~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~ 96 (418)
+.+.+.+++.++|... .....+.....+ ...++++|+||+|+|||+++++++..+.... ..++|+++....
T Consensus 12 ~~~~~tfdnF~~~~~~---~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~---~~v~y~~~~~~~ 85 (234)
T PRK05642 12 LRDDATFANYYPGANA---AALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRG---EPAVYLPLAELL 85 (234)
T ss_pred CCCcccccccCcCChH---HHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEeeHHHHH
Confidence 3445555444445432 233344333222 2246899999999999999999998876543 456777653221
Q ss_pred ChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccCCC
Q 014789 97 DDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVTS 174 (418)
Q Consensus 97 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~~ 174 (418)
. . . ..+.+.+.. .-+++|||++.+... .+..|+.+++..... .
T Consensus 86 ~------~----~------------------~~~~~~~~~------~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~-g 130 (234)
T PRK05642 86 D------R----G------------------PELLDNLEQ------YELVCLDDLDVIAGKADWEEALFHLFNRLRDS-G 130 (234)
T ss_pred h------h----h------------------HHHHHhhhh------CCEEEEechhhhcCChHHHHHHHHHHHHHHhc-C
Confidence 1 0 0 012222322 237899999988754 467789988765443 3
Q ss_pred cEEEEEeccCCChHHHHHHHhhcccC-ceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHH
Q 014789 175 QAVVIGVSCRLDADQLLEKRVRSRFS-HRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKE 253 (418)
Q Consensus 175 ~~~lI~~s~~~~~~~~l~~~v~sr~~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (418)
..++++++...+......+++.||+. ...+.+.|++.++..++++.+... .++ .++++.+..
T Consensus 131 ~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~---~~~--------------~l~~ev~~~ 193 (234)
T PRK05642 131 RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASR---RGL--------------HLTDEVGHF 193 (234)
T ss_pred CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHH
Confidence 34555555443333445799999996 345778999999999999976430 011 133444444
Q ss_pred HHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHh
Q 014789 254 IVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALS 296 (418)
Q Consensus 254 ~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~ 296 (418)
++++ ..||+|.+...+..-...+-....+||..-+++++.
T Consensus 194 L~~~---~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~~~~L~ 233 (234)
T PRK05642 194 ILTR---GTRSMSALFDLLERLDQASLQAQRKLTIPFLKETLG 233 (234)
T ss_pred HHHh---cCCCHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHhc
Confidence 4443 368999988887653322112346799988887753
No 80
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.63 E-value=2e-14 Score=132.52 Aligned_cols=205 Identities=12% Similarity=0.009 Sum_probs=122.6
Q ss_pred CCCChhhhHHHHHHHHHHHH----------h-cCCCceEEEECCCCCchHHHHHHHHHHHhhhCCC-CeEEEEEccccCC
Q 014789 29 LSDSPDSNYSKLKFLVSSSV----------T-EACNNSILLLGPRGSGKIAVLELILTDLLLEYPD-TISVIKLNGLLHS 96 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~----------~-~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~-~~~~v~in~~~~~ 96 (418)
.++|.++..++|.+...-.. . ..++.+++|+||||||||++++.+++.+...... .-.++++++..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~-- 100 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDD-- 100 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHH--
Confidence 57888877777766433210 0 1124489999999999999999999988754311 12356666421
Q ss_pred ChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc------chhHHHHHHhhhc
Q 014789 97 DDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG------KQRLLYSLLDAMQ 170 (418)
Q Consensus 97 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~------~~~~L~~l~~~~~ 170 (418)
+ ...+.. .+. ..+.+.+... .+.||+|||++.+... .......|+...+
T Consensus 101 ----l----~~~~~g---------~~~----~~~~~~~~~a----~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le 155 (284)
T TIGR02880 101 ----L----VGQYIG---------HTA----PKTKEILKRA----MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME 155 (284)
T ss_pred ----H----hHhhcc---------cch----HHHHHHHHHc----cCcEEEEechhhhccCCCccchHHHHHHHHHHHHh
Confidence 1 111100 011 1122333332 2469999999988421 2333444444444
Q ss_pred cCCCcEEEEEeccCCC--hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCC
Q 014789 171 SVTSQAVVIGVSCRLD--ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILAD 248 (418)
Q Consensus 171 ~~~~~~~lI~~s~~~~--~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (418)
....++.+|++++... ....++|.+.|||. ..|.|+||+.+++.+|+...+.-. ... +++
T Consensus 156 ~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~-~~i~fp~l~~edl~~I~~~~l~~~-~~~----------------l~~ 217 (284)
T TIGR02880 156 NQRDDLVVILAGYKDRMDSFFESNPGFSSRVA-HHVDFPDYSEAELLVIAGLMLKEQ-QYR----------------FSA 217 (284)
T ss_pred cCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCC-cEEEeCCcCHHHHHHHHHHHHHHh-ccc----------------cCH
Confidence 4446788888876532 22245799999997 569999999999999999987511 011 122
Q ss_pred hhHHHHHHHH-----hccccCHHHHHHHHHHHhhc
Q 014789 249 GRFKEIVNTL-----VNLDSTVNHLLRFLFLAVSY 278 (418)
Q Consensus 249 ~~~~~~~~~~-----~~~~gd~r~~~~~l~~a~~~ 278 (418)
+....+...+ ....||+|.+.+++..++..
T Consensus 218 ~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 218 EAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 2222221111 13469999999999877544
No 81
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=7.7e-15 Score=147.04 Aligned_cols=246 Identities=11% Similarity=0.081 Sum_probs=144.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeE-EEEEccccCCChHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTIS-VIKLNGLLHSDDCCAFKEI 105 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~-~v~in~~~~~~~~~~~~~i 105 (418)
+.+++.++.++.|..++........ +..++|+||||+|||++++.++..+.... .. .-+++|....+.+.....+
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~---~Ew~npv~~~~~~~~~~~~~s~ 160 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQV---QEWSNPTLPDFQKNDHKVTLSL 160 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHH---HHHhhhhhhcccccccccchhh
Confidence 3588999999999999887654433 34588999999999999999998876443 11 1134444333332222222
Q ss_pred HHHHHHhhhcccccCCChHhHHHHHHHHHhhc------CCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEE
Q 014789 106 ARQLCMEHQLLFSKMASFDDNSQFMIEMLREC------GLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVI 179 (418)
Q Consensus 106 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI 179 (418)
.+++.. ..+..+.+..+....... ...+...||+|||++.+.......++.++.|.......+.+|
T Consensus 161 ~~~~~~--------~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI 232 (637)
T TIGR00602 161 ESCFSN--------FQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLV 232 (637)
T ss_pred hhcccc--------ccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEE
Confidence 222211 112222223333222210 012467899999999988766667888888443334556677
Q ss_pred EeccCCC----------hH--HHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhC
Q 014789 180 GVSCRLD----------AD--QLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILA 247 (418)
Q Consensus 180 ~~s~~~~----------~~--~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (418)
++++... +. ..+.+.+.++.....|.|.|++..++.+.|...+........ ....+.
T Consensus 233 ~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~-----------~~~~~p 301 (637)
T TIGR00602 233 FIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNG-----------EKIKVP 301 (637)
T ss_pred EEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccc-----------cccccC
Confidence 7766422 11 123467777554467999999999987777776641100000 000111
Q ss_pred -ChhHHHHHHHHhccccCHHHHHHHHHHH----hhccc-ccCCCCChhhHHHHHhcc
Q 014789 248 -DGRFKEIVNTLVNLDSTVNHLLRFLFLA----VSYMD-LESGFLSFENFKTALSNS 298 (418)
Q Consensus 248 -~~~~~~~~~~~~~~~gd~r~~~~~l~~a----~~~a~-~~~~~it~~~v~~a~~~~ 298 (418)
++.+..++. ...||+|.|++.|..+ ..++. .+.+.++..|+..+....
T Consensus 302 ~~~~l~~I~~---~s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~ 355 (637)
T TIGR00602 302 KKTSVELLCQ---GCSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKG 355 (637)
T ss_pred CHHHHHHHHH---hCCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccC
Confidence 122333332 4579999999999886 23332 255678888887765443
No 82
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.63 E-value=9.6e-15 Score=131.10 Aligned_cols=198 Identities=18% Similarity=0.128 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh
Q 014789 35 SNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ 114 (418)
Q Consensus 35 ~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~ 114 (418)
..++.+... +....+.+++|+||+|||||++++.+++...... ..+++++|....... ..+
T Consensus 24 ~~~~~l~~~----~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~---~~~~~i~~~~~~~~~---~~~--------- 84 (226)
T TIGR03420 24 ELLAALRQL----AAGKGDRFLYLWGESGSGKSHLLQAACAAAEERG---KSAIYLPLAELAQAD---PEV--------- 84 (226)
T ss_pred HHHHHHHHH----HhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcC---CcEEEEeHHHHHHhH---HHH---------
Confidence 345554444 3455678999999999999999999998876543 456788875543210 011
Q ss_pred cccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc--hhHHHHHHhhhccCCCcEEEEEeccCCC-hHHHH
Q 014789 115 LLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK--QRLLYSLLDAMQSVTSQAVVIGVSCRLD-ADQLL 191 (418)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~--~~~L~~l~~~~~~~~~~~~lI~~s~~~~-~~~~l 191 (418)
.+.+. ...+|+|||+|.+.... +..|+.+++.....+. .+|.+++... -....
T Consensus 85 ----------------~~~~~------~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~--~iIits~~~~~~~~~~ 140 (226)
T TIGR03420 85 ----------------LEGLE------QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGG--RLLIAGRAAPAQLPLR 140 (226)
T ss_pred ----------------Hhhcc------cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCC--eEEEECCCChHHCCcc
Confidence 11111 23489999999997653 7778887765433222 3444554321 11112
Q ss_pred HHHhhcccC-ceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHH
Q 014789 192 EKRVRSRFS-HRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLR 270 (418)
Q Consensus 192 ~~~v~sr~~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~ 270 (418)
.+.+.+|+. ...+.++|++.++...+++.++.- .++ .++++.+ ..+... ..||+|.+.+
T Consensus 141 ~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~---~~~--------------~~~~~~l-~~L~~~--~~gn~r~L~~ 200 (226)
T TIGR03420 141 LPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAAR---RGL--------------QLPDEVA-DYLLRH--GSRDMGSLMA 200 (226)
T ss_pred cHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHH-HHHHHh--ccCCHHHHHH
Confidence 267778874 357899999999999999876430 000 1234444 444432 5799999999
Q ss_pred HHHHHhhcccccCCCCChhhHHHHH
Q 014789 271 FLFLAVSYMDLESGFLSFENFKTAL 295 (418)
Q Consensus 271 ~l~~a~~~a~~~~~~it~~~v~~a~ 295 (418)
++..+...+..+...|+.+.+.+.+
T Consensus 201 ~l~~~~~~~~~~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 201 LLDALDRASLAAKRKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 9887654433345579998887654
No 83
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.62 E-value=1.6e-14 Score=123.02 Aligned_cols=256 Identities=16% Similarity=0.218 Sum_probs=160.8
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++|-++-++.|.-+. +.+..++++|+||||+||||.+..+++.+-.... +--+..+|++....- +.++.-.+.
T Consensus 28 dIVGNe~tv~rl~via----~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~-ke~vLELNASdeRGI-DvVRn~IK~ 101 (333)
T KOG0991|consen 28 DIVGNEDTVERLSVIA----KEGNMPNLIISGPPGTGKTTSILCLARELLGDSY-KEAVLELNASDERGI-DVVRNKIKM 101 (333)
T ss_pred HhhCCHHHHHHHHHHH----HcCCCCceEeeCCCCCchhhHHHHHHHHHhChhh-hhHhhhccCcccccc-HHHHHHHHH
Confidence 4789999888876654 5667889999999999999999999998764321 123466776554431 122222222
Q ss_pred HHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChH
Q 014789 109 LCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDAD 188 (418)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~ 188 (418)
+.... + .-..++..||||||+|.+....|..|...++..... .++.+ ++|. .
T Consensus 102 FAQ~k--------------------v--~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~t-tRFal--aCN~---s 153 (333)
T KOG0991|consen 102 FAQKK--------------------V--TLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNT-TRFAL--ACNQ---S 153 (333)
T ss_pred HHHhh--------------------c--cCCCCceeEEEeeccchhhhHHHHHHHHHHHHHccc-chhhh--hhcc---h
Confidence 21111 0 012357889999999999998888998888775432 44444 4444 3
Q ss_pred HHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHH
Q 014789 189 QLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHL 268 (418)
Q Consensus 189 ~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~ 268 (418)
+.+-..+.||+. .++|..++..++..-+..-.+ .+.+ -++++.++.++ +-..||+|++
T Consensus 154 ~KIiEPIQSRCA--iLRysklsd~qiL~Rl~~v~k---~Ekv--------------~yt~dgLeaii---fta~GDMRQa 211 (333)
T KOG0991|consen 154 EKIIEPIQSRCA--ILRYSKLSDQQILKRLLEVAK---AEKV--------------NYTDDGLEAII---FTAQGDMRQA 211 (333)
T ss_pred hhhhhhHHhhhH--hhhhcccCHHHHHHHHHHHHH---HhCC--------------CCCcchHHHhh---hhccchHHHH
Confidence 455567899994 578899988887765555432 1111 12444444443 2346999999
Q ss_pred HHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCCChHH----HHHHHHHhhhhhhcCCcccHHHHHHHHHHH
Q 014789 269 LRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDCSILE----LYILVCLKRLEVKEQNSYNFNSVMKEYKSI 344 (418)
Q Consensus 269 ~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~----~~iL~a~~~l~~~~~~~~~~~~v~~~y~~~ 344 (418)
++.+...+. +-..|+.+.|.+...+-.+....+.+..+-... ..+|..+ ....++-.++...+-+.
T Consensus 212 lNnLQst~~----g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~~~~~~A~~il~~l------w~lgysp~Dii~~~FRv 281 (333)
T KOG0991|consen 212 LNNLQSTVN----GFGLVNQENVFKVCDEPHPLLVKKMLQACLKRNIDEALKILAEL------WKLGYSPEDIITTLFRV 281 (333)
T ss_pred HHHHHHHhc----cccccchhhhhhccCCCChHHHHHHHHHHHhccHHHHHHHHHHH------HHcCCCHHHHHHHHHHH
Confidence 999976443 445677777776666544444445554442211 1222222 23457777888877778
Q ss_pred HhhcCC
Q 014789 345 HDSFQT 350 (418)
Q Consensus 345 ~~~~~~ 350 (418)
|+.+.+
T Consensus 282 ~K~~~~ 287 (333)
T KOG0991|consen 282 VKNMDV 287 (333)
T ss_pred HHhccH
Confidence 887753
No 84
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.62 E-value=2.3e-14 Score=150.61 Aligned_cols=185 Identities=18% Similarity=0.235 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHhhcCCCCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhC-C--
Q 014789 6 PAAEKASNLLRSRLCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEY-P-- 82 (418)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~-~-- 82 (418)
+.+++.-.-+.....+-.. +.++||++|++.+.+.|.. ...++++|+||||+|||++++.++..+.... +
T Consensus 160 ~~l~~~~~~l~~~a~~~~~---~~~igr~~ei~~~~~~L~r----~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~ 232 (821)
T CHL00095 160 PTLEEFGTNLTKEAIDGNL---DPVIGREKEIERVIQILGR----RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDI 232 (821)
T ss_pred hHHHHHHHHHHHHHHcCCC---CCCCCcHHHHHHHHHHHcc----cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh
Confidence 3556665555555444333 2489999999999998754 3567899999999999999999999886432 1
Q ss_pred -CCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcch--
Q 014789 83 -DTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQ-- 159 (418)
Q Consensus 83 -~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~-- 159 (418)
....++.+++... .. .. .-.+.+++.+..+++.+.. ..+.||||||+|.+...+.
T Consensus 233 l~~~~i~~l~~~~l----------~a---g~-----~~~ge~e~rl~~i~~~~~~----~~~~ILfiDEih~l~~~g~~~ 290 (821)
T CHL00095 233 LEDKLVITLDIGLL----------LA---GT-----KYRGEFEERLKRIFDEIQE----NNNIILVIDEVHTLIGAGAAE 290 (821)
T ss_pred hcCCeEEEeeHHHH----------hc---cC-----CCccHHHHHHHHHHHHHHh----cCCeEEEEecHHHHhcCCCCC
Confidence 1234445543211 00 00 0012233334444444432 2578999999999986421
Q ss_pred --hHHHHHHhhhccCCCcEEEEEeccCCChHHH--HHHHhhcccCceEEEecCCCHHHHHHHHHHHh
Q 014789 160 --RLLYSLLDAMQSVTSQAVVIGVSCRLDADQL--LEKRVRSRFSHRKLLFLPPSKEDMQRLLEHIL 222 (418)
Q Consensus 160 --~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~--l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l 222 (418)
.-..+++. +......+.+||+|+..++... .++.+.+|| ..|.+++++.++...|++...
T Consensus 291 g~~~~a~lLk-p~l~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf--~~I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 291 GAIDAANILK-PALARGELQCIGATTLDEYRKHIEKDPALERRF--QPVYVGEPSVEETIEILFGLR 354 (821)
T ss_pred CcccHHHHhH-HHHhCCCcEEEEeCCHHHHHHHHhcCHHHHhcc--eEEecCCCCHHHHHHHHHHHH
Confidence 12233333 2223478999999998766543 468899999 468899999999888887643
No 85
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=4.6e-14 Score=135.92 Aligned_cols=210 Identities=14% Similarity=0.186 Sum_probs=134.2
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhC------CCCeEEEEEccccCCChHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEY------PDTISVIKLNGLLHSDDCCAF 102 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~------~~~~~~v~in~~~~~~~~~~~ 102 (418)
.++|.+...+.+.+.+.. +..++++++|||||+|||++++.+++.+.... ...+.++.+++..... ...+
T Consensus 18 ~iig~~~~~~~l~~~i~~---~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~i 93 (367)
T PRK14970 18 DVVGQSHITNTLLNAIEN---NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNS-VDDI 93 (367)
T ss_pred hcCCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCC-HHHH
Confidence 578999988877776532 23466899999999999999999999886532 0124445555432221 1223
Q ss_pred HHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEec
Q 014789 103 KEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVS 182 (418)
Q Consensus 103 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s 182 (418)
++++.++. .....+.+.||+|||+|.+....++.+...+ +......++|+++
T Consensus 94 ~~l~~~~~-------------------------~~p~~~~~kiviIDE~~~l~~~~~~~ll~~l---e~~~~~~~~Il~~ 145 (367)
T PRK14970 94 RNLIDQVR-------------------------IPPQTGKYKIYIIDEVHMLSSAAFNAFLKTL---EEPPAHAIFILAT 145 (367)
T ss_pred HHHHHHHh-------------------------hccccCCcEEEEEeChhhcCHHHHHHHHHHH---hCCCCceEEEEEe
Confidence 33333221 1111235679999999999765444443333 3333456677766
Q ss_pred cCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccc
Q 014789 183 CRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLD 262 (418)
Q Consensus 183 ~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (418)
+. ...+.+.+.||+ ..+.|.|++.+++..++...+.- .++ .++++++..++.. ..
T Consensus 146 ~~---~~kl~~~l~sr~--~~v~~~~~~~~~l~~~l~~~~~~---~g~--------------~i~~~al~~l~~~---~~ 200 (367)
T PRK14970 146 TE---KHKIIPTILSRC--QIFDFKRITIKDIKEHLAGIAVK---EGI--------------KFEDDALHIIAQK---AD 200 (367)
T ss_pred CC---cccCCHHHHhcc--eeEecCCccHHHHHHHHHHHHHH---cCC--------------CCCHHHHHHHHHh---CC
Confidence 54 456678889998 57899999999999999887641 111 1344444444443 35
Q ss_pred cCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhcc
Q 014789 263 STVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNS 298 (418)
Q Consensus 263 gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~ 298 (418)
||+|.+++.+.....++. . .||.++|.+.+...
T Consensus 201 gdlr~~~~~lekl~~y~~--~-~it~~~v~~~~~~~ 233 (367)
T PRK14970 201 GALRDALSIFDRVVTFCG--K-NITRQAVTENLNIL 233 (367)
T ss_pred CCHHHHHHHHHHHHHhcC--C-CCCHHHHHHHhCCC
Confidence 899999999988665532 2 28888888776544
No 86
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.62 E-value=3.2e-14 Score=146.15 Aligned_cols=234 Identities=13% Similarity=0.162 Sum_probs=145.2
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++||+++++.+.+.|.+ ...++++|+||||+|||++++.++..+.... +.....+|...... ...+..
T Consensus 187 ~liGR~~ei~~~i~iL~r----~~~~n~LLvGppGvGKT~lae~la~~i~~~~---vP~~l~~~~~~~l~---~~~lla- 255 (758)
T PRK11034 187 PLIGREKELERAIQVLCR----RRKNNPLLVGESGVGKTAIAEGLAWRIVQGD---VPEVMADCTIYSLD---IGSLLA- 255 (758)
T ss_pred cCcCCCHHHHHHHHHHhc----cCCCCeEEECCCCCCHHHHHHHHHHHHHhcC---CCchhcCCeEEecc---HHHHhc-
Confidence 489999999999988755 3567889999999999999999998765432 11122233222211 111110
Q ss_pred HHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----chhHHHHHHhhhccCCCcEEEEEecc
Q 014789 109 LCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----KQRLLYSLLDAMQSVTSQAVVIGVSC 183 (418)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----~~~~L~~l~~~~~~~~~~~~lI~~s~ 183 (418)
.. .-.+.+++.++.+++.+... .+.||+|||+|.+... .+.-+.++++-. .....+.+||+|+
T Consensus 256 --G~-----~~~Ge~e~rl~~l~~~l~~~----~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~-L~~g~i~vIgATt 323 (758)
T PRK11034 256 --GT-----KYRGDFEKRFKALLKQLEQD----TNSILFIDEIHTIIGAGAASGGQVDAANLIKPL-LSSGKIRVIGSTT 323 (758)
T ss_pred --cc-----chhhhHHHHHHHHHHHHHhc----CCCEEEeccHHHHhccCCCCCcHHHHHHHHHHH-HhCCCeEEEecCC
Confidence 00 00123444445555555432 4679999999999653 222333333321 1247899999999
Q ss_pred CCChHH--HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhc-
Q 014789 184 RLDADQ--LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVN- 260 (418)
Q Consensus 184 ~~~~~~--~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 260 (418)
..++.. ..++++.+|| +.|.+++++.++..+||+.... .|..+..-.++++++..++.-...
T Consensus 324 ~~E~~~~~~~D~AL~rRF--q~I~v~ePs~~~~~~IL~~~~~-------------~ye~~h~v~i~~~al~~a~~ls~ry 388 (758)
T PRK11034 324 YQEFSNIFEKDRALARRF--QKIDITEPSIEETVQIINGLKP-------------KYEAHHDVRYTAKAVRAAVELAVKY 388 (758)
T ss_pred hHHHHHHhhccHHHHhhC--cEEEeCCCCHHHHHHHHHHHHH-------------HhhhccCCCcCHHHHHHHHHHhhcc
Confidence 866533 3589999999 4699999999999999997643 222222222345544444432222
Q ss_pred --cccCHHHHHHHHHHHhhccc-----ccCCCCChhhHHHHHhccCC
Q 014789 261 --LDSTVNHLLRFLFLAVSYMD-----LESGFLSFENFKTALSNSHR 300 (418)
Q Consensus 261 --~~gd~r~~~~~l~~a~~~a~-----~~~~~it~~~v~~a~~~~~~ 300 (418)
...-+.++++++..|.+... .....|+.++|.+.+..+..
T Consensus 389 i~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tg 435 (758)
T PRK11034 389 INDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIAR 435 (758)
T ss_pred ccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhC
Confidence 23356689999988775432 12345888888887766544
No 87
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.61 E-value=6.2e-14 Score=138.74 Aligned_cols=230 Identities=15% Similarity=0.193 Sum_probs=141.8
Q ss_pred hcCCCCccCCCCCChhhhHHHHHHHHHHHHhc--CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCC
Q 014789 19 LCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTE--ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHS 96 (418)
Q Consensus 19 ~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~--~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~ 96 (418)
-+++.|.+++.++|-..++-. ........+ ...+.++|||++|+|||+|++++++.+..... ...++|+++..
T Consensus 280 ~L~~~~TFDnFvvG~sN~~A~--aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~-g~~V~Yitaee-- 354 (617)
T PRK14086 280 RLNPKYTFDTFVIGASNRFAH--AAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYP-GTRVRYVSSEE-- 354 (617)
T ss_pred CCCCCCCHhhhcCCCccHHHH--HHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEeeHHH--
Confidence 355666665555666554221 122222222 22456999999999999999999998875332 26678887633
Q ss_pred ChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccCCC
Q 014789 97 DDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVTS 174 (418)
Q Consensus 97 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~~ 174 (418)
++.++...+... . .+.+.+.+. ..-+|+|||++.+..+ .+..|+.+++.....+.
T Consensus 355 ----f~~el~~al~~~---------~----~~~f~~~y~------~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk 411 (617)
T PRK14086 355 ----FTNEFINSIRDG---------K----GDSFRRRYR------EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANK 411 (617)
T ss_pred ----HHHHHHHHHHhc---------c----HHHHHHHhh------cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCC
Confidence 233333322111 0 112223333 3468999999999775 56788888887665433
Q ss_pred cEEEEEeccCC-ChHHHHHHHhhcccC-ceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHH
Q 014789 175 QAVVIGVSCRL-DADQLLEKRVRSRFS-HRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFK 252 (418)
Q Consensus 175 ~~~lI~~s~~~-~~~~~l~~~v~sr~~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (418)
. +|.+++.. .-...+++++.|||. .-.+.+.+++.+...+||+.+... .++ .++++.+.
T Consensus 412 ~--IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~---r~l--------------~l~~eVi~ 472 (617)
T PRK14086 412 Q--IVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ---EQL--------------NAPPEVLE 472 (617)
T ss_pred C--EEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh---cCC--------------CCCHHHHH
Confidence 3 33355543 223467899999997 346789999999999999998651 111 12333344
Q ss_pred HHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhcc
Q 014789 253 EIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNS 298 (418)
Q Consensus 253 ~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~ 298 (418)
.++.+ ..+|+|.+..++.+....+......||.+.+.++++.+
T Consensus 473 yLa~r---~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~ 515 (617)
T PRK14086 473 FIASR---ISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDL 515 (617)
T ss_pred HHHHh---ccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 44443 35788887777766544444455668888887777654
No 88
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2e-14 Score=137.84 Aligned_cols=161 Identities=17% Similarity=0.275 Sum_probs=110.5
Q ss_pred CCCChhhhHHHHHHHHHHHHhcC---------CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEA---------CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~---------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
.+-+.++...+|...+-.-++.+ .+..+|++||||||||.++++++++.... ++.|-|-..-
T Consensus 512 dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~N------FisVKGPELl--- 582 (802)
T KOG0733|consen 512 DIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGAN------FISVKGPELL--- 582 (802)
T ss_pred hcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCc------eEeecCHHHH---
Confidence 35566777777777665555443 37889999999999999999999876533 3555543221
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--------chhHHHHHHhhhcc
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--------KQRLLYSLLDAMQS 171 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--------~~~~L~~l~~~~~~ 171 (418)
..-.+ ..+.....++...+ .+.|+|||+||+|.|++. ...++.+|+.....
T Consensus 583 -------NkYVG----------ESErAVR~vFqRAR----~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDG 641 (802)
T KOG0733|consen 583 -------NKYVG----------ESERAVRQVFQRAR----ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDG 641 (802)
T ss_pred -------HHHhh----------hHHHHHHHHHHHhh----cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcc
Confidence 11101 11122223333332 347999999999999986 34677777765543
Q ss_pred --CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 172 --VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 172 --~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
....+.|||+||+.| .++|++.+ ||. +.+.+.+++.++..+||+....
T Consensus 642 l~~R~gV~viaATNRPD---iIDpAiLRPGRlD-k~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 642 LEERRGVYVIAATNRPD---IIDPAILRPGRLD-KLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred cccccceEEEeecCCCc---ccchhhcCCCccC-ceeeecCCCHHHHHHHHHHHhc
Confidence 346899999999954 56778765 675 5677889999999999998876
No 89
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.61 E-value=4.1e-14 Score=147.55 Aligned_cols=161 Identities=22% Similarity=0.322 Sum_probs=109.8
Q ss_pred CCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
.+.|.+...+.|.+.+.-.+.. ..+.+++|+||||||||+++++++..+.. .++.+++....+
T Consensus 454 di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~------~fi~v~~~~l~~-- 525 (733)
T TIGR01243 454 DIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA------NFIAVRGPEILS-- 525 (733)
T ss_pred hcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC------CEEEEehHHHhh--
Confidence 4678888888887776533322 24678999999999999999999998653 235555532211
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc---------chhHHHHHHhhhc
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG---------KQRLLYSLLDAMQ 170 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~---------~~~~L~~l~~~~~ 170 (418)
.. .+..+.....+++..+. ..|.||+|||+|.+... .+.++..|+....
T Consensus 526 --------~~----------vGese~~i~~~f~~A~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ld 583 (733)
T TIGR01243 526 --------KW----------VGESEKAIREIFRKARQ----AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMD 583 (733)
T ss_pred --------cc----------cCcHHHHHHHHHHHHHh----cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhh
Confidence 00 01112233334443333 36899999999999754 1345566665544
Q ss_pred c--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 171 S--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 171 ~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
. ...+++|||+||+ ++.+++.+.+ ||. +.|.+++++.++..+|++..+.
T Consensus 584 g~~~~~~v~vI~aTn~---~~~ld~allRpgRfd-~~i~v~~Pd~~~R~~i~~~~~~ 636 (733)
T TIGR01243 584 GIQELSNVVVIAATNR---PDILDPALLRPGRFD-RLILVPPPDEEARKEIFKIHTR 636 (733)
T ss_pred cccCCCCEEEEEeCCC---hhhCCHhhcCCCccc-eEEEeCCcCHHHHHHHHHHHhc
Confidence 2 3468999999998 5678888875 897 6799999999999999987654
No 90
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=3.7e-14 Score=143.53 Aligned_cols=231 Identities=16% Similarity=0.191 Sum_probs=138.8
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
+.++|.+...+.|...+.. +.-++.++|+||+|+|||++++.+++.+....+.. ..-.|..+ ...+.+..
T Consensus 16 ~eiiGq~~~~~~L~~~i~~---~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~---~~~~c~~c----~~c~~i~~ 85 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAE---GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP---KGRPCGTC----EMCRAIAE 85 (585)
T ss_pred HHhcCCHHHHHHHHHHHHh---CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC---CCCCCccC----HHHHHHhc
Confidence 3688999988877666533 23356678999999999999999999886432100 00012111 12222222
Q ss_pred HHHHhh-hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 108 QLCMEH-QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 108 ~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
..+... ........+.++ .+.+.+.+......+...||||||+|.|....++.|...++. .....+||++++.
T Consensus 86 ~~~~d~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe---pp~~tv~Il~t~~-- 159 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE---PPPHAIFILATTE-- 159 (585)
T ss_pred CCCCeEEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc---CCCCeEEEEEeCC--
Confidence 111110 000001112222 233344444333345688999999999977545555444443 3356777777765
Q ss_pred hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHH
Q 014789 187 ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVN 266 (418)
Q Consensus 187 ~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r 266 (418)
.+.+.+.++||+ ..+.|.+++..++.+++...+.- .++ .++++++..++. . ..||+|
T Consensus 160 -~~kll~tI~SR~--~~i~f~~l~~~el~~~L~~~a~~---egl--------------~i~~eal~~La~-~--s~Gdlr 216 (585)
T PRK14950 160 -VHKVPATILSRC--QRFDFHRHSVADMAAHLRKIAAA---EGI--------------NLEPGALEAIAR-A--ATGSMR 216 (585)
T ss_pred -hhhhhHHHHhcc--ceeeCCCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHHHHH-H--cCCCHH
Confidence 455778899998 56899999999999999887640 010 123333433333 2 358999
Q ss_pred HHHHHHHHHhhcccccCCCCChhhHHHHHhccCC
Q 014789 267 HLLRFLFLAVSYMDLESGFLSFENFKTALSNSHR 300 (418)
Q Consensus 267 ~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~ 300 (418)
.+++.+.....+ +...|+.++|.+.+.....
T Consensus 217 ~al~~LekL~~y---~~~~It~e~V~~ll~~s~~ 247 (585)
T PRK14950 217 DAENLLQQLATT---YGGEISLSQVQSLLGISGD 247 (585)
T ss_pred HHHHHHHHHHHh---cCCCCCHHHHHHHhcCCCH
Confidence 999999875443 3457999998876655433
No 91
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.5e-13 Score=125.50 Aligned_cols=179 Identities=16% Similarity=0.246 Sum_probs=114.8
Q ss_pred HHHHHHhhcCCCC-ccCCCCCChhhhHHHHHHHHHHHH------hc--CCCceEEEECCCCCchHHHHHHHHHHHhhhCC
Q 014789 12 SNLLRSRLCDPNF-VVKHLSDSPDSNYSKLKFLVSSSV------TE--ACNNSILLLGPRGSGKIAVLELILTDLLLEYP 82 (418)
Q Consensus 12 ~~~~~~~~~~~~~-~~~~~l~gr~~e~~~l~~~l~~~~------~~--~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~ 82 (418)
...+.+.+++.+- +-=+.+.|.++..+-|.+.+---+ ++ .+...+|+.||||||||.++++++.+-..
T Consensus 195 ve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t--- 271 (491)
T KOG0738|consen 195 VEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT--- 271 (491)
T ss_pred HHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC---
Confidence 3466666665442 222457788877777766543211 11 23678999999999999999999987652
Q ss_pred CCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc----
Q 014789 83 DTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK---- 158 (418)
Q Consensus 83 ~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~---- 158 (418)
.+.-|......+. ++ +..+.+...|+++.+.. .|.+|||||||.++..+
T Consensus 272 ---TFFNVSsstltSK---wR-----------------GeSEKlvRlLFemARfy----APStIFiDEIDslcs~RG~s~ 324 (491)
T KOG0738|consen 272 ---TFFNVSSSTLTSK---WR-----------------GESEKLVRLLFEMARFY----APSTIFIDEIDSLCSQRGGSS 324 (491)
T ss_pred ---eEEEechhhhhhh---hc-----------------cchHHHHHHHHHHHHHh----CCceeehhhHHHHHhcCCCcc
Confidence 2233333222221 11 22345566677766654 69999999999999741
Q ss_pred --------hhHHHHHHhhhccC--CCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 159 --------QRLLYSLLDAMQSV--TSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 159 --------~~~L~~l~~~~~~~--~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
...|.-.+|-.+.. ..++++|.++++. +-.++.++++||. .+|.++-++.+....+|+-.|.
T Consensus 325 EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~--PWdiDEAlrRRlE-KRIyIPLP~~~~R~~Li~~~l~ 396 (491)
T KOG0738|consen 325 EHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNF--PWDIDEALRRRLE-KRIYIPLPDAEARSALIKILLR 396 (491)
T ss_pred chhHHHHHHHHHHHHhhccccccccceeEEEEeccCC--CcchHHHHHHHHh-hheeeeCCCHHHHHHHHHHhhc
Confidence 12233334444432 2456666665554 4467889999997 5688888899999999888876
No 92
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.60 E-value=2.9e-14 Score=127.93 Aligned_cols=184 Identities=15% Similarity=0.206 Sum_probs=119.8
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHH
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFM 130 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 130 (418)
....+++|+||+|||||++++.+++.+.... ..+++++|...... + .
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~---~~~~~i~~~~~~~~----------~--~------------------ 86 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGG---RNARYLDAASPLLA----------F--D------------------ 86 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEehHHhHHH----------H--h------------------
Confidence 3467899999999999999999998875543 45677776432110 0 0
Q ss_pred HHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccCc-eEEEecCC
Q 014789 131 IEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSH-RKLLFLPP 209 (418)
Q Consensus 131 ~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~-~~i~~~~~ 209 (418)
. .....+|+|||+|.+....+..|+.+++..... ...++|.+++..+....+.+.+.||+.. ..+.++|+
T Consensus 87 --~------~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~-~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl 157 (227)
T PRK08903 87 --F------DPEAELYAVDDVERLDDAQQIALFNLFNRVRAH-GQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPL 157 (227)
T ss_pred --h------cccCCEEEEeChhhcCchHHHHHHHHHHHHHHc-CCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCC
Confidence 0 012458999999999776778888888654433 2333444444332222356778889852 57899999
Q ss_pred CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChh
Q 014789 210 SKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFE 289 (418)
Q Consensus 210 ~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~ 289 (418)
+.++...++..... ..++ .++++++..+++ ...||+|.+..++..--..+......||..
T Consensus 158 ~~~~~~~~l~~~~~---~~~v--------------~l~~~al~~L~~---~~~gn~~~l~~~l~~l~~~~~~~~~~i~~~ 217 (227)
T PRK08903 158 SDADKIAALKAAAA---ERGL--------------QLADEVPDYLLT---HFRRDMPSLMALLDALDRYSLEQKRPVTLP 217 (227)
T ss_pred CHHHHHHHHHHHHH---HcCC--------------CCCHHHHHHHHH---hccCCHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 98888888776432 0011 123333333333 256999999999877444443455789999
Q ss_pred hHHHHHh
Q 014789 290 NFKTALS 296 (418)
Q Consensus 290 ~v~~a~~ 296 (418)
.+++++.
T Consensus 218 ~~~~~l~ 224 (227)
T PRK08903 218 LLREMLA 224 (227)
T ss_pred HHHHHHh
Confidence 9988765
No 93
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.60 E-value=3e-14 Score=149.09 Aligned_cols=242 Identities=15% Similarity=0.185 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHhhcCCCCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhC-C---
Q 014789 7 AAEKASNLLRSRLCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEY-P--- 82 (418)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~-~--- 82 (418)
.+++.-.-+..+.-. ..+ +.++||++++..+...+. .+..++++|+||||+|||++++.+++.+.... +
T Consensus 169 ~l~~~~~~L~~~~r~-~~l--d~~iGr~~ei~~~i~~l~----r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l 241 (852)
T TIGR03345 169 ALDQYTTDLTAQARE-GKI--DPVLGRDDEIRQMIDILL----RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPAL 241 (852)
T ss_pred hHHHHhhhHHHHhcC-CCC--CcccCCHHHHHHHHHHHh----cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccc
Confidence 445554444443332 222 348999999888877653 34567899999999999999999999886432 1
Q ss_pred CCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----
Q 014789 83 DTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG----- 157 (418)
Q Consensus 83 ~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~----- 157 (418)
.+..++.++....... -...+.+.+.++.+++.+.. .+.+.||||||+|.+...
T Consensus 242 ~~~~i~~l~l~~l~ag------------------~~~~ge~e~~lk~ii~e~~~---~~~~~ILfIDEih~l~~~g~~~~ 300 (852)
T TIGR03345 242 RNVRLLSLDLGLLQAG------------------ASVKGEFENRLKSVIDEVKA---SPQPIILFIDEAHTLIGAGGQAG 300 (852)
T ss_pred cCCeEEEeehhhhhcc------------------cccchHHHHHHHHHHHHHHh---cCCCeEEEEeChHHhccCCCccc
Confidence 0122222222111000 00001222333333333322 236899999999999852
Q ss_pred chhHHHHHHhhhccCCCcEEEEEeccCCChHH--HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHH
Q 014789 158 KQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQ--LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYA 235 (418)
Q Consensus 158 ~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~--~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~ 235 (418)
.++ ..+++. +....+.+.+||+|+..++.. ..++.+.+|| +.|.+++++.++..+||+....
T Consensus 301 ~~d-~~n~Lk-p~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf--~~i~v~eps~~~~~~iL~~~~~------------ 364 (852)
T TIGR03345 301 QGD-AANLLK-PALARGELRTIAATTWAEYKKYFEKDPALTRRF--QVVKVEEPDEETAIRMLRGLAP------------ 364 (852)
T ss_pred ccc-HHHHhh-HHhhCCCeEEEEecCHHHHhhhhhccHHHHHhC--eEEEeCCCCHHHHHHHHHHHHH------------
Confidence 233 223332 223357899999999865433 3589999999 5799999999999999755432
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHhccc---cCHHHHHHHHHHHhhccc--ccCCCCChhhHHH
Q 014789 236 VEFNKKIKNILADGRFKEIVNTLVNLD---STVNHLLRFLFLAVSYMD--LESGFLSFENFKT 293 (418)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---gd~r~~~~~l~~a~~~a~--~~~~~it~~~v~~ 293 (418)
.|..+..-.++++++..++.-...+- .-+.++++++..|+..+. ..+.++..+++.+
T Consensus 365 -~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~ 426 (852)
T TIGR03345 365 -VLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRR 426 (852)
T ss_pred -hhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHH
Confidence 11111111234555554444333332 346668888888766543 2334445455443
No 94
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.59 E-value=3e-13 Score=127.75 Aligned_cols=291 Identities=16% Similarity=0.188 Sum_probs=179.7
Q ss_pred hcCCCCccCCCCCChhhhHHH-HHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC
Q 014789 19 LCDPNFVVKHLSDSPDSNYSK-LKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD 97 (418)
Q Consensus 19 ~~~~~~~~~~~l~gr~~e~~~-l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~ 97 (418)
-+++.|.+++.++|-...... +...+... .+...+.++|||+.|+|||+++++++.......+ +..++|+....
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~aa~~~va~~-~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~-~a~v~y~~se~--- 153 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYAAAKAVAEN-PGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGP-NARVVYLTSED--- 153 (408)
T ss_pred cCCCCCchhheeeCCchHHHHHHHHHHHhc-cCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCC-CceEEeccHHH---
Confidence 467788886666776655432 22222111 2224789999999999999999999998887664 36777776433
Q ss_pred hHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccCCCc
Q 014789 98 DCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVTSQ 175 (418)
Q Consensus 98 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~~~ 175 (418)
++...+..+... ..+.+.+.. . .-+++||+++.+..+ .|..+..+++.......
T Consensus 154 ---f~~~~v~a~~~~-------------~~~~Fk~~y-~------~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~k- 209 (408)
T COG0593 154 ---FTNDFVKALRDN-------------EMEKFKEKY-S------LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGK- 209 (408)
T ss_pred ---HHHHHHHHHHhh-------------hHHHHHHhh-c------cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCC-
Confidence 344444444221 122233333 2 348999999999886 58888888877665434
Q ss_pred EEEEEeccCCC-hHHHHHHHhhcccC-ceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHH
Q 014789 176 AVVIGVSCRLD-ADQLLEKRVRSRFS-HRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKE 253 (418)
Q Consensus 176 ~~lI~~s~~~~-~~~~l~~~v~sr~~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (418)
.+|.++.+.+ -...++++++|||. .-.+.+.|++.+....||..+.... ++ .++++.+..
T Consensus 210 -qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~---~~--------------~i~~ev~~~ 271 (408)
T COG0593 210 -QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDR---GI--------------EIPDEVLEF 271 (408)
T ss_pred -EEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhc---CC--------------CCCHHHHHH
Confidence 4444554433 23457899999998 4567899999999999999976411 11 123444444
Q ss_pred HHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHHhhhhhhcCCccc
Q 014789 254 IVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCLKRLEVKEQNSYN 333 (418)
Q Consensus 254 ~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~~~l~~~~~~~~~ 333 (418)
++.+ ...|+|.+...+.+....+......||.+.+.++++.+..... . .+.... +..+++ .-.++
T Consensus 272 la~~---~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~----~-itie~I--~~~Va~-----~y~v~ 336 (408)
T COG0593 272 LAKR---LDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGE----K-ITIEDI--QKIVAE-----YYNVK 336 (408)
T ss_pred HHHH---hhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhcccc----c-CCHHHH--HHHHHH-----HhCCC
Confidence 4444 3578888877776655555444558999999998887765433 2 333322 222221 22345
Q ss_pred HHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhCCcceeecC
Q 014789 334 FNSVMKEYKSIHDSFQTSDYYSRNVCLRAFEHLLQRELICFTDN 377 (418)
Q Consensus 334 ~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~~ 377 (418)
..++.. ++....-...|++.+-....|.++.+-.+.+.
T Consensus 337 ~~dl~s------~~R~~~i~~~RqiamyL~r~lt~~Slp~IG~~ 374 (408)
T COG0593 337 VSDLLS------KSRTRNIVRPRQIAMYLARELTNLSLPEIGKA 374 (408)
T ss_pred HHHhhc------cccccccchHHHHHHHHHHHHccCcHHHHHHH
Confidence 555522 11111234567777777777777777666443
No 95
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4.5e-14 Score=138.76 Aligned_cols=158 Identities=21% Similarity=0.351 Sum_probs=101.8
Q ss_pred CCCChhhhHHHHHHHHHHHHhcC--------CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEA--------CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCC 100 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~--------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~ 100 (418)
.+-|.++....|.+.+.--++.. +-..+++|||||||||.++++++.+.. ..++.|.|-..
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs------L~FlSVKGPEL----- 741 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS------LNFLSVKGPEL----- 741 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce------eeEEeecCHHH-----
Confidence 46778888777777665422222 245799999999999999999998765 33344444221
Q ss_pred HHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc----------hhHHHHHHhhh-
Q 014789 101 AFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK----------QRLLYSLLDAM- 169 (418)
Q Consensus 101 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~----------~~~L~~l~~~~- 169 (418)
+ .--- +..+++.+.+++..++. .|+||++||+|.+.+++ ..++.+|+-..
T Consensus 742 -L----NMYV----------GqSE~NVR~VFerAR~A----~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELD 802 (953)
T KOG0736|consen 742 -L----NMYV----------GQSEENVREVFERARSA----APCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELD 802 (953)
T ss_pred -H----HHHh----------cchHHHHHHHHHHhhcc----CCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhh
Confidence 1 1100 22345566666665554 69999999999999861 23555554322
Q ss_pred --cc-CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCH-HHHHHHHHH
Q 014789 170 --QS-VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSK-EDMQRLLEH 220 (418)
Q Consensus 170 --~~-~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~-~e~~~il~~ 220 (418)
.. ...++.|||+||+ ++.++|.+.+ ||. +.+++.|-.. +.-..+|+.
T Consensus 803 gls~~~s~~VFViGATNR---PDLLDpALLRPGRFD-KLvyvG~~~d~esk~~vL~A 855 (953)
T KOG0736|consen 803 GLSDSSSQDVFVIGATNR---PDLLDPALLRPGRFD-KLVYVGPNEDAESKLRVLEA 855 (953)
T ss_pred cccCCCCCceEEEecCCC---ccccChhhcCCCccc-eeEEecCCccHHHHHHHHHH
Confidence 22 4468999999999 4567888875 776 5667766653 333444444
No 96
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.1e-14 Score=139.52 Aligned_cols=161 Identities=22% Similarity=0.352 Sum_probs=112.8
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcC---------CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEA---------CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~---------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
..+-|-++++.+|...+.. ++.+ +++.++|+||||||||.++++++.++. +.++.|++..
T Consensus 190 ~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~------vPf~~isApe---- 258 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG------VPFLSISAPE---- 258 (802)
T ss_pred hhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC------CceEeecchh----
Confidence 3578899999999998877 4443 378899999999999999999999876 3346665432
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc--------hhHHHHHHhhhc
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK--------QRLLYSLLDAMQ 170 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~--------~~~L~~l~~~~~ 170 (418)
|.+.+.+ ..+ +.|.+++.+.. ...|+|+||||||.+.+++ +.++.+|+..+.
T Consensus 259 ------ivSGvSG----------ESE---kkiRelF~~A~-~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD 318 (802)
T KOG0733|consen 259 ------IVSGVSG----------ESE---KKIRELFDQAK-SNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMD 318 (802)
T ss_pred ------hhcccCc----------ccH---HHHHHHHHHHh-ccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhh
Confidence 2222211 112 23333343322 3479999999999999862 245555554443
Q ss_pred c------CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 171 S------VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 171 ~------~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
. ...+++|||+||+ ++.|++.+++ ||. +.|.+.-++..+..+||+....
T Consensus 319 ~l~~~~~~g~~VlVIgATnR---PDslDpaLRRaGRFd-rEI~l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 319 ELSNEKTKGDPVLVIGATNR---PDSLDPALRRAGRFD-REICLGVPSETAREEILRIICR 375 (802)
T ss_pred cccccccCCCCeEEEecCCC---CcccCHHHhcccccc-ceeeecCCchHHHHHHHHHHHh
Confidence 2 2468999999999 5578888875 786 6799999998888887776544
No 97
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.4e-13 Score=137.31 Aligned_cols=225 Identities=16% Similarity=0.136 Sum_probs=134.0
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++|.+.....|...+.. +.-+++++++||+|+|||++++.+++.+........ ..-.|..+ ..++.+...
T Consensus 17 ~liGq~~i~~~L~~~l~~---~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~--~~~~Cg~C----~~C~~i~~g 87 (620)
T PRK14948 17 ELVGQEAIATTLKNALIS---NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP--TPEPCGKC----ELCRAIAAG 87 (620)
T ss_pred hccChHHHHHHHHHHHHc---CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC--CCCCCccc----HHHHHHhcC
Confidence 578988888877776643 223678999999999999999999999876431100 00122211 122333222
Q ss_pred HHHhh-hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCCh
Q 014789 109 LCMEH-QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDA 187 (418)
Q Consensus 109 l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~ 187 (418)
.+... ........+.+ ..+.+.+.+......+...|+||||+|.|....++.|...++ .....+++|+++++
T Consensus 88 ~h~D~~ei~~~~~~~vd-~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LE---ePp~~tvfIL~t~~--- 160 (620)
T PRK14948 88 NALDVIEIDAASNTGVD-NIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLE---EPPPRVVFVLATTD--- 160 (620)
T ss_pred CCccEEEEeccccCCHH-HHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHh---cCCcCeEEEEEeCC---
Confidence 21111 00001112222 233333444333334567899999999997655555544444 44467888888875
Q ss_pred HHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHH
Q 014789 188 DQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNH 267 (418)
Q Consensus 188 ~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~ 267 (418)
.+.+.+.++||+ ..+.|.+++.+++...+.....- .+. .++++++..++ +. ..||+|.
T Consensus 161 ~~~llpTIrSRc--~~~~f~~l~~~ei~~~L~~ia~k---egi--------------~is~~al~~La-~~--s~G~lr~ 218 (620)
T PRK14948 161 PQRVLPTIISRC--QRFDFRRIPLEAMVQHLSEIAEK---ESI--------------EIEPEALTLVA-QR--SQGGLRD 218 (620)
T ss_pred hhhhhHHHHhhe--eEEEecCCCHHHHHHHHHHHHHH---hCC--------------CCCHHHHHHHH-HH--cCCCHHH
Confidence 556888999999 67899999999999888776530 000 12233333333 22 3589999
Q ss_pred HHHHHHHHhhcccccCCCCChhhHHHHH
Q 014789 268 LLRFLFLAVSYMDLESGFLSFENFKTAL 295 (418)
Q Consensus 268 ~~~~l~~a~~~a~~~~~~it~~~v~~a~ 295 (418)
+++++...... ...|+.++|.+..
T Consensus 219 A~~lLeklsL~----~~~It~e~V~~lv 242 (620)
T PRK14948 219 AESLLDQLSLL----PGPITPEAVWDLL 242 (620)
T ss_pred HHHHHHHHHhc----cCCCCHHHHHHHh
Confidence 99998763222 1357766665443
No 98
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.57 E-value=3.3e-13 Score=121.76 Aligned_cols=227 Identities=19% Similarity=0.222 Sum_probs=143.2
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhC---CCCeEEEEEccccCCChHHHHHHHHHHHH
Q 014789 34 DSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEY---PDTISVIKLNGLLHSDDCCAFKEIARQLC 110 (418)
Q Consensus 34 ~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~---~~~~~~v~in~~~~~~~~~~~~~i~~~l~ 110 (418)
.+.++.|.+.+.. -+....++++|+|++|.|||++++.+.+...... ...+.++++.+-...+...++..|+.+++
T Consensus 43 ~~~L~~L~~Ll~~-P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 43 KEALDRLEELLEY-PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHHHhC-CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 3445555555443 2444578999999999999999999998765433 12356788888788888999999999997
Q ss_pred HhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc---chhHHHHHHhhh-ccCCCcEEEEEeccCCC
Q 014789 111 MEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG---KQRLLYSLLDAM-QSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~---~~~~L~~l~~~~-~~~~~~~~lI~~s~~~~ 186 (418)
... ....+..+........++.. +.-+|||||++++... .|..+.++++.. ...+.+++.+|+...
T Consensus 122 aP~----~~~~~~~~~~~~~~~llr~~----~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A-- 191 (302)
T PF05621_consen 122 APY----RPRDRVAKLEQQVLRLLRRL----GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA-- 191 (302)
T ss_pred ccc----CCCCCHHHHHHHHHHHHHHc----CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH--
Confidence 653 23334555555666777776 4789999999998664 555555555443 333345555554422
Q ss_pred hHHH--HHHHhhcccCceEEEecCCCH-HHHHHHHHHH---hcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhc
Q 014789 187 ADQL--LEKRVRSRFSHRKLLFLPPSK-EDMQRLLEHI---LSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVN 260 (418)
Q Consensus 187 ~~~~--l~~~v~sr~~~~~i~~~~~~~-~e~~~il~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (418)
... -++++.|||. .+.++++.. +++..++... +.+...+.+ .+.. ++..++.
T Consensus 192 -~~al~~D~QLa~RF~--~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l----------------~~~~---la~~i~~ 249 (302)
T PF05621_consen 192 -YRALRTDPQLASRFE--PFELPRWELDEEFRRLLASFERALPLRKPSNL----------------ASPE---LARRIHE 249 (302)
T ss_pred -HHHhccCHHHHhccC--CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCC----------------CCHH---HHHHHHH
Confidence 232 3789999995 467788763 4555555443 223333333 2222 2233332
Q ss_pred -cccCHHHHHHHHHHHhhcc-cccCCCCChhhHHH
Q 014789 261 -LDSTVNHLLRFLFLAVSYM-DLESGFLSFENFKT 293 (418)
Q Consensus 261 -~~gd~r~~~~~l~~a~~~a-~~~~~~it~~~v~~ 293 (418)
..|.+..+..++..|...| ..|.+.||.+++..
T Consensus 250 ~s~G~iG~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 250 RSEGLIGELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred HcCCchHHHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 2356666666666554443 35889999988765
No 99
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=8.3e-14 Score=119.95 Aligned_cols=215 Identities=21% Similarity=0.296 Sum_probs=138.8
Q ss_pred CCChhhhHHHHHHHHHHHHhcC---------CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHH
Q 014789 30 SDSPDSNYSKLKFLVSSSVTEA---------CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCC 100 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~~---------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~ 100 (418)
+-|.++++.++.+.++--++.+ .+..+++|||||||||.++++++..-. ..++++++...
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~------c~firvsgsel----- 217 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD------CTFIRVSGSEL----- 217 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc------eEEEEechHHH-----
Confidence 4578999999999887655543 478899999999999999999987644 44577776432
Q ss_pred HHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----------chhHHHHHHhhh
Q 014789 101 AFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----------KQRLLYSLLDAM 169 (418)
Q Consensus 101 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----------~~~~L~~l~~~~ 169 (418)
.+ ..-.+ -+.....++-+.++ +.|.||+.||+|.+... .|..+..|++..
T Consensus 218 -vq----k~ige----------gsrmvrelfvmare----hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql 278 (404)
T KOG0728|consen 218 -VQ----KYIGE----------GSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL 278 (404)
T ss_pred -HH----HHhhh----------hHHHHHHHHHHHHh----cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc
Confidence 21 11111 12233344444444 36999999999998763 234444444433
Q ss_pred cc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHH
Q 014789 170 QS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNI 245 (418)
Q Consensus 170 ~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 245 (418)
.. ...++-+|.+||+.|+ |+|++.+ |+. +.|.|||++.+...+|++-.-. .. ++
T Consensus 279 dgfeatknikvimatnridi---ld~allrpgrid-rkiefp~p~e~ar~~ilkihsr-------------km-----nl 336 (404)
T KOG0728|consen 279 DGFEATKNIKVIMATNRIDI---LDPALLRPGRID-RKIEFPPPNEEARLDILKIHSR-------------KM-----NL 336 (404)
T ss_pred cccccccceEEEEecccccc---ccHhhcCCCccc-ccccCCCCCHHHHHHHHHHhhh-------------hh-----ch
Confidence 32 3468999999999664 5667654 554 6799999998877777764421 00 01
Q ss_pred hCChhHHHHHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhcc
Q 014789 246 LADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNS 298 (418)
Q Consensus 246 ~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~ 298 (418)
...-.+..++.++-+.+|. ....+|..|+-+|- +..-++|-+||.-|...+
T Consensus 337 ~rgi~l~kiaekm~gasga--evk~vcteagm~alrerrvhvtqedfemav~kv 388 (404)
T KOG0728|consen 337 TRGINLRKIAEKMPGASGA--EVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 388 (404)
T ss_pred hcccCHHHHHHhCCCCccc--hhhhhhhhhhHHHHHHhhccccHHHHHHHHHHH
Confidence 1112344555555555552 24456777776654 356689999998887654
No 100
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.57 E-value=2.1e-13 Score=119.23 Aligned_cols=167 Identities=19% Similarity=0.268 Sum_probs=122.0
Q ss_pred CCCCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHH
Q 014789 21 DPNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCC 100 (418)
Q Consensus 21 ~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~ 100 (418)
.|+.++-+.|+|-+.|.+.|.+....++.+.+.+++||+|++|||||++|++++..+.... .++|.+......+
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LRlIev~k~~L~~--- 93 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG---LRLIEVSKEDLGD--- 93 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ceEEEECHHHhcc---
Confidence 4555555679999999999999999999999999999999999999999999999988776 8888887544443
Q ss_pred HHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-chhHHHHHHhhh-ccCCCcEEE
Q 014789 101 AFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-KQRLLYSLLDAM-QSVTSQAVV 178 (418)
Q Consensus 101 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-~~~~L~~l~~~~-~~~~~~~~l 178 (418)
+..|+.. ++. ...+.||++|++-.=... .-..|..+++-. +..+.++.+
T Consensus 94 -l~~l~~~-------------------------l~~---~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~Nvli 144 (249)
T PF05673_consen 94 -LPELLDL-------------------------LRD---RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLI 144 (249)
T ss_pred -HHHHHHH-------------------------Hhc---CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEE
Confidence 2233332 222 235789999986422111 234566666543 235679999
Q ss_pred EEeccCCChH-HHHH-----------------H--HhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 179 IGVSCRLDAD-QLLE-----------------K--RVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 179 I~~s~~~~~~-~~l~-----------------~--~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
.+|||+-.+. +.+. . .+..||+ -.|.|.|++.++..+|+++.+.
T Consensus 145 yATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFG-L~l~F~~~~q~~YL~IV~~~~~ 208 (249)
T PF05673_consen 145 YATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFG-LWLSFYPPDQEEYLAIVRHYAE 208 (249)
T ss_pred EEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCC-cEEEecCCCHHHHHHHHHHHHH
Confidence 9999974332 2221 1 2346898 4689999999999999999874
No 101
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=4.9e-13 Score=135.15 Aligned_cols=215 Identities=16% Similarity=0.222 Sum_probs=135.8
Q ss_pred hcCCCCccCCCCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCC---------------
Q 014789 19 LCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYP--------------- 82 (418)
Q Consensus 19 ~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~--------------- 82 (418)
-+.|... +.++|.+...+.|...+. .+. ++.++++||+|+|||++++.+++.+....+
T Consensus 10 kyRP~~f--~~viGq~~~~~~L~~~i~----~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~ 83 (614)
T PRK14971 10 KYRPSTF--ESVVGQEALTTTLKNAIA----TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVA 83 (614)
T ss_pred HHCCCCH--HHhcCcHHHHHHHHHHHH----cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHH
Confidence 3444433 358899888887777653 344 566889999999999999999998864321
Q ss_pred ----CCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc
Q 014789 83 ----DTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK 158 (418)
Q Consensus 83 ----~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~ 158 (418)
..+.+..+++..... ...++++. +.+......+..-|+||||+|.|....
T Consensus 84 ~~~~~~~n~~~ld~~~~~~-vd~Ir~li-------------------------~~~~~~P~~~~~KVvIIdea~~Ls~~a 137 (614)
T PRK14971 84 FNEQRSYNIHELDAASNNS-VDDIRNLI-------------------------EQVRIPPQIGKYKIYIIDEVHMLSQAA 137 (614)
T ss_pred HhcCCCCceEEecccccCC-HHHHHHHH-------------------------HHHhhCcccCCcEEEEEECcccCCHHH
Confidence 012233333321111 11122222 222222223467799999999997765
Q ss_pred hhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHH
Q 014789 159 QRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEF 238 (418)
Q Consensus 159 ~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~ 238 (418)
++.|...++. .....++|++++. ...+.+.++||+ ..+.|.|++.+++...+...+.. .++
T Consensus 138 ~naLLK~LEe---pp~~tifIL~tt~---~~kIl~tI~SRc--~iv~f~~ls~~ei~~~L~~ia~~---egi-------- 198 (614)
T PRK14971 138 FNAFLKTLEE---PPSYAIFILATTE---KHKILPTILSRC--QIFDFNRIQVADIVNHLQYVASK---EGI-------- 198 (614)
T ss_pred HHHHHHHHhC---CCCCeEEEEEeCC---chhchHHHHhhh--heeecCCCCHHHHHHHHHHHHHH---cCC--------
Confidence 6666555554 3356778888765 457788999999 57999999999999999886541 111
Q ss_pred HHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHh
Q 014789 239 NKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALS 296 (418)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~ 296 (418)
-++++++..++.. ..||+|.+++.+.....++. ..|+.++|.+.+.
T Consensus 199 ------~i~~~al~~La~~---s~gdlr~al~~Lekl~~y~~---~~It~~~V~~~l~ 244 (614)
T PRK14971 199 ------TAEPEALNVIAQK---ADGGMRDALSIFDQVVSFTG---GNITYKSVIENLN 244 (614)
T ss_pred ------CCCHHHHHHHHHH---cCCCHHHHHHHHHHHHHhcc---CCccHHHHHHHhC
Confidence 1123333333332 35999999999987655532 2277777766554
No 102
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.56 E-value=1.2e-14 Score=118.86 Aligned_cols=119 Identities=24% Similarity=0.358 Sum_probs=78.5
Q ss_pred EEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHh
Q 014789 56 ILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLR 135 (418)
Q Consensus 56 ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 135 (418)
++|+||||||||++++.+++.+. +.++.++|....+.. . .........+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~------~~~~~i~~~~~~~~~--~------------------~~~~~~i~~~~~~~~ 54 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG------FPFIEIDGSELISSY--A------------------GDSEQKIRDFFKKAK 54 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT------SEEEEEETTHHHTSS--T------------------THHHHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhcc------ccccccccccccccc--c------------------ccccccccccccccc
Confidence 68999999999999999999984 556888886643210 0 001111112222222
Q ss_pred hcCCCceEEEEEecchhhhhhcc-----------hhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhh-cccCceE
Q 014789 136 ECGLAHKTIIFVLDEFDLFAQGK-----------QRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVR-SRFSHRK 203 (418)
Q Consensus 136 ~~~~~~~~~viilDEid~l~~~~-----------~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~-sr~~~~~ 203 (418)
.. ..+.||+|||+|.+.... ...|+..++.......++.+|+++|. .+.+++.+. +||. ..
T Consensus 55 ~~---~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~---~~~i~~~l~~~rf~-~~ 127 (132)
T PF00004_consen 55 KS---AKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS---PDKIDPALLRSRFD-RR 127 (132)
T ss_dssp HT---STSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS---GGGSCHHHHSTTSE-EE
T ss_pred cc---ccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC---hhhCCHhHHhCCCc-EE
Confidence 21 137999999999998875 34444444544444467999999998 567788888 9996 45
Q ss_pred EEec
Q 014789 204 LLFL 207 (418)
Q Consensus 204 i~~~ 207 (418)
|.++
T Consensus 128 i~~~ 131 (132)
T PF00004_consen 128 IEFP 131 (132)
T ss_dssp EEE-
T ss_pred EEcC
Confidence 6654
No 103
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.55 E-value=5.4e-13 Score=125.99 Aligned_cols=203 Identities=17% Similarity=0.180 Sum_probs=125.0
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
.++|++...+.+..++. .+. ++.++++||||+|||++++.+++.+. ..++++||.. .. ...++..+.
T Consensus 22 ~~~~~~~~~~~l~~~~~----~~~~~~~lll~G~~G~GKT~la~~l~~~~~------~~~~~i~~~~-~~-~~~i~~~l~ 89 (316)
T PHA02544 22 ECILPAADKETFKSIVK----KGRIPNMLLHSPSPGTGKTTVAKALCNEVG------AEVLFVNGSD-CR-IDFVRNRLT 89 (316)
T ss_pred HhcCcHHHHHHHHHHHh----cCCCCeEEEeeCcCCCCHHHHHHHHHHHhC------ccceEeccCc-cc-HHHHHHHHH
Confidence 57899998888877764 334 45555699999999999999988764 2346778765 22 222222111
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhh-hcchhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFA-QGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~-~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
... ......+.+.||||||+|.+. ...+..|..+++.+. ....+|+++|.
T Consensus 90 ~~~------------------------~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~---~~~~~Ilt~n~-- 140 (316)
T PHA02544 90 RFA------------------------STVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYS---KNCSFIITANN-- 140 (316)
T ss_pred HHH------------------------HhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcC---CCceEEEEcCC--
Confidence 110 000011246799999999993 335677777666533 55678888876
Q ss_pred hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHH
Q 014789 187 ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVN 266 (418)
Q Consensus 187 ~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r 266 (418)
...+.+.++||| ..+.|++++.++..+++...+... ..........++++++..++.. ..||.|
T Consensus 141 -~~~l~~~l~sR~--~~i~~~~p~~~~~~~il~~~~~~~----------~~~~~~~~~~i~~~al~~l~~~---~~~d~r 204 (316)
T PHA02544 141 -KNGIIEPLRSRC--RVIDFGVPTKEEQIEMMKQMIVRC----------KGILEAEGVEVDMKVLAALVKK---NFPDFR 204 (316)
T ss_pred -hhhchHHHHhhc--eEEEeCCCCHHHHHHHHHHHHHHH----------HHHHHhcCCCCCHHHHHHHHHh---cCCCHH
Confidence 457789999999 468999999888887776543200 0000000111233333444432 358999
Q ss_pred HHHHHHHHHhhcccccCCCCChhhHHH
Q 014789 267 HLLRFLFLAVSYMDLESGFLSFENFKT 293 (418)
Q Consensus 267 ~~~~~l~~a~~~a~~~~~~it~~~v~~ 293 (418)
.+++.+..... ...++.+++..
T Consensus 205 ~~l~~l~~~~~-----~~~i~~~~l~~ 226 (316)
T PHA02544 205 RTINELQRYAS-----TGKIDAGILSE 226 (316)
T ss_pred HHHHHHHHHHc-----cCCCCHHHHHH
Confidence 99888765321 23577666554
No 104
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=4.5e-13 Score=128.26 Aligned_cols=177 Identities=14% Similarity=0.143 Sum_probs=109.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHh------cCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVT------EACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCA 101 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~------~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~ 101 (418)
+.++|.+...+.|...+..... .+-+++++++||+|+|||++++.+++.+....+. .-.|..+. .
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-----~~~Cg~C~----~ 75 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-----EPGCGECR----A 75 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-----CCCCCCCH----H
Confidence 3578999999988888765321 1146789999999999999999999988654311 00121111 1
Q ss_pred HHHHHHHHHHhhhc-ccc-cCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEE
Q 014789 102 FKEIARQLCMEHQL-LFS-KMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVI 179 (418)
Q Consensus 102 ~~~i~~~l~~~~~~-~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI 179 (418)
.+.+....+..... .+. ...+.++ .+.+.+.+......+++.|+||||+|.+....++.|...++.+ +.+..+|
T Consensus 76 C~~~~~~~hpD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep---~~~~~fI 151 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP---PPRTVWL 151 (394)
T ss_pred HHHHhcCCCCCEEEeccccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC---CCCCeEE
Confidence 11111110000000 000 1112222 2334444444334457789999999999876666666655543 3445555
Q ss_pred EeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHh
Q 014789 180 GVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHIL 222 (418)
Q Consensus 180 ~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l 222 (418)
.+|+. ++.+.+.++||+ +.+.|+|++.+++.+++....
T Consensus 152 L~a~~---~~~llpTIrSRc--~~i~f~~~~~~~i~~~L~~~~ 189 (394)
T PRK07940 152 LCAPS---PEDVLPTIRSRC--RHVALRTPSVEAVAEVLVRRD 189 (394)
T ss_pred EEECC---hHHChHHHHhhC--eEEECCCCCHHHHHHHHHHhc
Confidence 55555 567789999999 689999999999999987653
No 105
>PRK06620 hypothetical protein; Validated
Probab=99.53 E-value=2.4e-13 Score=119.98 Aligned_cols=200 Identities=14% Similarity=0.198 Sum_probs=119.4
Q ss_pred cCCCCccCCCCCChhhhHHHHHHHHHHHHhc--CCC--ceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccC
Q 014789 20 CDPNFVVKHLSDSPDSNYSKLKFLVSSSVTE--ACN--NSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLH 95 (418)
Q Consensus 20 ~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~--~~~--~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~ 95 (418)
.++.|.+++.++|...+. ....+...... ..+ ++++|+||||+|||++++.+++.... .++.....
T Consensus 9 ~~~~~tfd~Fvvg~~N~~--a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~--------~~~~~~~~ 78 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQ--AYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA--------YIIKDIFF 78 (214)
T ss_pred CCCCCCchhhEecccHHH--HHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCC--------EEcchhhh
Confidence 355666655667764432 22233333321 112 67999999999999999987664321 22211000
Q ss_pred CChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCc
Q 014789 96 SDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQ 175 (418)
Q Consensus 96 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~ 175 (418)
. . +.+. ..-+++|||+|.+ .+..|..+++.....+ .
T Consensus 79 ~------~----------------------------~~~~------~~d~lliDdi~~~---~~~~lf~l~N~~~e~g-~ 114 (214)
T PRK06620 79 N------E----------------------------EILE------KYNAFIIEDIENW---QEPALLHIFNIINEKQ-K 114 (214)
T ss_pred c------h----------------------------hHHh------cCCEEEEeccccc---hHHHHHHHHHHHHhcC-C
Confidence 0 0 0011 2247899999965 2356777777665543 3
Q ss_pred EEEEEeccCCChHHHHHHHhhcccC-ceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHH
Q 014789 176 AVVIGVSCRLDADQLLEKRVRSRFS-HRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEI 254 (418)
Q Consensus 176 ~~lI~~s~~~~~~~~l~~~v~sr~~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (418)
.++++++....... + ++++||+. .-.+.+.|++.+++..+++.+... .++ .++++.+..+
T Consensus 115 ~ilits~~~p~~l~-l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~---~~l--------------~l~~ev~~~L 175 (214)
T PRK06620 115 YLLLTSSDKSRNFT-L-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSI---SSV--------------TISRQIIDFL 175 (214)
T ss_pred EEEEEcCCCccccc-h-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHHH
Confidence 45555554443233 5 89999996 337899999999999998887540 011 1334444444
Q ss_pred HHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHH
Q 014789 255 VNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTAL 295 (418)
Q Consensus 255 ~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~ 295 (418)
+.. ..||+|.++..+...-..+......||.+.+++++
T Consensus 176 ~~~---~~~d~r~l~~~l~~l~~~~~~~~~~it~~~~~~~l 213 (214)
T PRK06620 176 LVN---LPREYSKIIEILENINYFALISKRKITISLVKEVL 213 (214)
T ss_pred HHH---ccCCHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 443 36999999988877432222344579998888765
No 106
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.53 E-value=1.2e-12 Score=123.63 Aligned_cols=207 Identities=15% Similarity=0.169 Sum_probs=128.7
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCC--CeEEEEEccccCCChHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPD--TISVIKLNGLLHSDDCCAFKEI 105 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~--~~~~v~in~~~~~~~~~~~~~i 105 (418)
.++|.++..+.+...+ ..+. ++.++|+||+|+|||+++..+++.+...... ........|..+ ..++.+
T Consensus 24 ~l~Gh~~a~~~L~~a~----~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c----~~c~~i 95 (351)
T PRK09112 24 RLFGHEEAEAFLAQAY----REGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPAS----PVWRQI 95 (351)
T ss_pred hccCcHHHHHHHHHHH----HcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCC----HHHHHH
Confidence 5789988888777765 3334 6679999999999999999999998763210 011111112111 123333
Q ss_pred HHHHHHhhh-c---------ccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCc
Q 014789 106 ARQLCMEHQ-L---------LFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQ 175 (418)
Q Consensus 106 ~~~l~~~~~-~---------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~ 175 (418)
...-+.... + ...+..+.++ ...+.+.+......++..|+||||+|.|....++.|...++.+ ..+
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp---p~~ 171 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP---PAR 171 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC---CCC
Confidence 322111100 0 0011223333 3456666665555678899999999999877666666666553 345
Q ss_pred EEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHH
Q 014789 176 AVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIV 255 (418)
Q Consensus 176 ~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (418)
..+|.+++. ++.+.+.++||+ +.++|+|++.+++.+++.+... . .. ++++.+..++
T Consensus 172 ~~fiLit~~---~~~llptIrSRc--~~i~l~pl~~~~~~~~L~~~~~-~--~~----------------~~~~~~~~i~ 227 (351)
T PRK09112 172 ALFILISHS---SGRLLPTIRSRC--QPISLKPLDDDELKKALSHLGS-S--QG----------------SDGEITEALL 227 (351)
T ss_pred ceEEEEECC---hhhccHHHHhhc--cEEEecCCCHHHHHHHHHHhhc-c--cC----------------CCHHHHHHHH
Confidence 666666655 456679999999 5799999999999999988421 0 00 1233332222
Q ss_pred HHHhccccCHHHHHHHHHH
Q 014789 256 NTLVNLDSTVNHLLRFLFL 274 (418)
Q Consensus 256 ~~~~~~~gd~r~~~~~l~~ 274 (418)
+ . ..|++|.+++++..
T Consensus 228 ~-~--s~G~pr~Al~ll~~ 243 (351)
T PRK09112 228 Q-R--SKGSVRKALLLLNY 243 (351)
T ss_pred H-H--cCCCHHHHHHHHhc
Confidence 2 2 35999999988854
No 107
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.53 E-value=2.3e-13 Score=143.57 Aligned_cols=209 Identities=14% Similarity=0.185 Sum_probs=127.7
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhC-C---CCeEEEEEccccCCChHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEY-P---DTISVIKLNGLLHSDDCCAFKE 104 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~-~---~~~~~v~in~~~~~~~~~~~~~ 104 (418)
.++||+++++.+...|.+ ...++++|+||||+|||++++.++..+.... + ....++.++...
T Consensus 174 ~~igr~~ei~~~~~~l~r----~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~---------- 239 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSR----RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA---------- 239 (852)
T ss_pred cCCCcHHHHHHHHHHHhc----CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH----------
Confidence 489999999988887633 4567899999999999999999999876432 1 113334443211
Q ss_pred HHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc----chhHHHHHHhhhccCCCcEEEEE
Q 014789 105 IARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG----KQRLLYSLLDAMQSVTSQAVVIG 180 (418)
Q Consensus 105 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~----~~~~L~~l~~~~~~~~~~~~lI~ 180 (418)
+.... . -.+.+++.+..+++.+.. ...+.||||||+|.+... +..-..+++.. ......+.+||
T Consensus 240 l~a~~--~------~~g~~e~~l~~~l~~~~~---~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~-~l~~g~i~~Ig 307 (852)
T TIGR03346 240 LIAGA--K------YRGEFEERLKAVLNEVTK---SEGQIILFIDELHTLVGAGKAEGAMDAGNMLKP-ALARGELHCIG 307 (852)
T ss_pred Hhhcc--h------hhhhHHHHHHHHHHHHHh---cCCCeEEEeccHHHhhcCCCCcchhHHHHHhch-hhhcCceEEEE
Confidence 11000 0 001233333344444432 236899999999999852 11112233322 22457899999
Q ss_pred eccCCChHH--HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHH
Q 014789 181 VSCRLDADQ--LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS-LPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNT 257 (418)
Q Consensus 181 ~s~~~~~~~--~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (418)
+|+..++.. ..++.+.+||. .|.+++++.++...|++.... ++....+ .+.++++..++.-
T Consensus 308 aTt~~e~r~~~~~d~al~rRf~--~i~v~~p~~~~~~~iL~~~~~~~e~~~~v--------------~~~d~~i~~~~~l 371 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALERRFQ--PVFVDEPTVEDTISILRGLKERYEVHHGV--------------RITDPAIVAAATL 371 (852)
T ss_pred eCcHHHHHHHhhcCHHHHhcCC--EEEeCCCCHHHHHHHHHHHHHHhccccCC--------------CCCHHHHHHHHHh
Confidence 999876544 35899999994 588999999999999887543 1111111 1234444444433
Q ss_pred HhccccC---HHHHHHHHHHHhhcc
Q 014789 258 LVNLDST---VNHLLRFLFLAVSYM 279 (418)
Q Consensus 258 ~~~~~gd---~r~~~~~l~~a~~~a 279 (418)
...+-.| +.++++++..|++.+
T Consensus 372 s~~yi~~r~lPdkAidlld~a~a~~ 396 (852)
T TIGR03346 372 SHRYITDRFLPDKAIDLIDEAAARI 396 (852)
T ss_pred ccccccccCCchHHHHHHHHHHHHH
Confidence 3333344 777888888776654
No 108
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.3e-13 Score=133.57 Aligned_cols=248 Identities=17% Similarity=0.183 Sum_probs=153.1
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCccCCCCCChhhhHHHHHHHHHHHHhc--CCCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 2 GKENPAAEKASNLLRSRLCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTE--ACNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~--~~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
+|++.++++++..|++. =+|.++..+.|.++|.-.-.. -.++.++|+||||+|||++++.+++.+.+
T Consensus 308 sk~~~Dl~~a~~iLd~d-----------HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~R 376 (782)
T COG0466 308 SKDKLDLKKAEKILDKD-----------HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGR 376 (782)
T ss_pred cchhhhHHHHHHHhccc-----------ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCC
Confidence 45566677776665532 356777777777776443322 24778889999999999999999999987
Q ss_pred hCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--
Q 014789 80 EYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-- 157 (418)
Q Consensus 80 ~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-- 157 (418)
++ ++++--...+...+-. ...- + -|.-+. .+.+.++... ....|++|||+|.+...
T Consensus 377 kf------vR~sLGGvrDEAEIRG--------HRRT-Y-IGamPG----rIiQ~mkka~--~~NPv~LLDEIDKm~ss~r 434 (782)
T COG0466 377 KF------VRISLGGVRDEAEIRG--------HRRT-Y-IGAMPG----KIIQGMKKAG--VKNPVFLLDEIDKMGSSFR 434 (782)
T ss_pred CE------EEEecCccccHHHhcc--------cccc-c-cccCCh----HHHHHHHHhC--CcCCeEEeechhhccCCCC
Confidence 65 5554333333321110 0000 0 001111 2333343332 24568899999999886
Q ss_pred --chhHHHHHHhhhccC------------CCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 158 --KQRLLYSLLDAMQSV------------TSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 158 --~~~~L~~l~~~~~~~------------~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
..+.|...+|--|+. -+++.||+|+|..+ .+...+..|+ ..|.+..|+.+|-.+|.+..|-
T Consensus 435 GDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~---tIP~PLlDRM--EiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 435 GDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD---TIPAPLLDRM--EVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred CChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc---cCChHHhcce--eeeeecCCChHHHHHHHHHhcc
Confidence 346777777644331 26899999999854 4455677888 6899999999999999999874
Q ss_pred --CCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhcccc---CHHHHHHHHHHHhhcc-cc--cC-CCCChhhHHHH
Q 014789 224 --LPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDS---TVNHLLRFLFLAVSYM-DL--ES-GFLSFENFKTA 294 (418)
Q Consensus 224 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---d~r~~~~~l~~a~~~a-~~--~~-~~it~~~v~~a 294 (418)
.-.+.++.+. +-.|.++++..+++.....+| =-|.+-.+|+.++... .. .. ..|+..++.+-
T Consensus 510 Pk~~~~~gL~~~---------el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~y 580 (782)
T COG0466 510 PKQLKEHGLKKG---------ELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKY 580 (782)
T ss_pred hHHHHHcCCCcc---------ceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHH
Confidence 1112233211 113567778888887766554 2344667777765432 21 22 25777777765
Q ss_pred Hh
Q 014789 295 LS 296 (418)
Q Consensus 295 ~~ 296 (418)
+.
T Consensus 581 LG 582 (782)
T COG0466 581 LG 582 (782)
T ss_pred hC
Confidence 54
No 109
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=5.7e-13 Score=133.37 Aligned_cols=221 Identities=18% Similarity=0.226 Sum_probs=140.6
Q ss_pred CCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
.+.|.+...+.+.+.+.-.+.. ..+..++|+||||||||+++++++.... ..++.+.+....+.
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~------~~fi~v~~~~l~sk- 315 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESR------SRFISVKGSELLSK- 315 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCC------CeEEEeeCHHHhcc-
Confidence 4556676666666665554433 2355899999999999999999998654 34466655432221
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc--------hhHHHHHHhhhc-
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK--------QRLLYSLLDAMQ- 170 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~--------~~~L~~l~~~~~- 170 (418)
.+ +..+.....++...+. ..|.||++||+|.+.... ..++.+++.+..
T Consensus 316 -~v------------------Gesek~ir~~F~~A~~----~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~ 372 (494)
T COG0464 316 -WV------------------GESEKNIRELFEKARK----LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDG 372 (494)
T ss_pred -cc------------------chHHHHHHHHHHHHHc----CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcC
Confidence 01 1122233334443332 369999999999999862 257778777764
Q ss_pred -cCCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhC
Q 014789 171 -SVTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILA 247 (418)
Q Consensus 171 -~~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (418)
....++.+|++||. ++.+++.+.+ ||. +.+.+++++.++..+|++..+.-.... + ..
T Consensus 373 ~e~~~~v~vi~aTN~---p~~ld~a~lR~gRfd-~~i~v~~pd~~~r~~i~~~~~~~~~~~-~---------------~~ 432 (494)
T COG0464 373 IEKAEGVLVIAATNR---PDDLDPALLRPGRFD-RLIYVPLPDLEERLEIFKIHLRDKKPP-L---------------AE 432 (494)
T ss_pred CCccCceEEEecCCC---ccccCHhhcccCccc-eEeecCCCCHHHHHHHHHHHhcccCCc-c---------------hh
Confidence 34467889999998 5577888887 997 679999999999999999998611100 0 01
Q ss_pred ChhHHHHHHHHhccccCHHHHHHHHHHHhhcccc-c-CCCCChhhHHHHHhccCCC
Q 014789 248 DGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDL-E-SGFLSFENFKTALSNSHRQ 301 (418)
Q Consensus 248 ~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~-~-~~~it~~~v~~a~~~~~~~ 301 (418)
+-....+++...+. .-..+..+|+.|...+.. . ...|+.+|+.+|.+.+.+.
T Consensus 433 ~~~~~~l~~~t~~~--sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 433 DVDLEELAEITEGY--SGADIAALVREAALEALREARRREVTLDDFLDALKKIKPS 486 (494)
T ss_pred hhhHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhcCCC
Confidence 11122222222122 223455556655544322 2 5579999999999886554
No 110
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.3e-13 Score=118.84 Aligned_cols=213 Identities=18% Similarity=0.237 Sum_probs=130.6
Q ss_pred CCChhhhHHHHHHHHHHH---------HhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHH
Q 014789 30 SDSPDSNYSKLKFLVSSS---------VTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCC 100 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~---------~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~ 100 (418)
+-|.+-+.+++.+.++-- +.-.+++.+++|||||||||.+++++++.-.. .+++++|..+.
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a------~firvvgsefv---- 226 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA------AFIRVVGSEFV---- 226 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccch------heeeeccHHHH----
Confidence 456666666666654432 23346889999999999999999999886543 34777775432
Q ss_pred HHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----------chhHHHHHHhhh
Q 014789 101 AFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----------KQRLLYSLLDAM 169 (418)
Q Consensus 101 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----------~~~~L~~l~~~~ 169 (418)
+. -|+..+ .+...++.+.++ +.|.||+|||+|.+.++ .|.+|..|++.+
T Consensus 227 --qk---ylgegp-----------rmvrdvfrlake----napsiifideidaiatkrfdaqtgadrevqril~ellnqm 286 (408)
T KOG0727|consen 227 --QK---YLGEGP-----------RMVRDVFRLAKE----NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQM 286 (408)
T ss_pred --HH---HhccCc-----------HHHHHHHHHHhc----cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhc
Confidence 11 121110 122233333333 47999999999999875 367788888766
Q ss_pred cc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHH---HhcCCCCCCCChHHHHHHHHHH
Q 014789 170 QS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEH---ILSLPVDSSLPHAYAVEFNKKI 242 (418)
Q Consensus 170 ~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~---~l~~~~~~~~~~~~~~~~~~~~ 242 (418)
.. ...++-+|.+||+. +.++|++.+ |+. +.|.||-++..|.+-++.. ++.+..+.
T Consensus 287 dgfdq~~nvkvimatnra---dtldpallrpgrld-rkiefplpdrrqkrlvf~titskm~ls~~v-------------- 348 (408)
T KOG0727|consen 287 DGFDQTTNVKVIMATNRA---DTLDPALLRPGRLD-RKIEFPLPDRRQKRLVFSTITSKMNLSDEV-------------- 348 (408)
T ss_pred cCcCcccceEEEEecCcc---cccCHhhcCCcccc-ccccCCCCchhhhhhhHHhhhhcccCCccc--------------
Confidence 54 34689999999995 467788765 565 6799998887776554443 33322221
Q ss_pred HHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccC
Q 014789 243 KNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSH 299 (418)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~ 299 (418)
+++..+.+--..+| -.+..+|..|+..|- .+.-.|...++.+|....-
T Consensus 349 -------dle~~v~rpdkis~--adi~aicqeagm~avr~nryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 349 -------DLEDLVARPDKISG--ADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVV 397 (408)
T ss_pred -------CHHHHhcCccccch--hhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhc
Confidence 12222221111111 223445666655543 3555778888988876543
No 111
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.51 E-value=4.3e-13 Score=116.67 Aligned_cols=160 Identities=18% Similarity=0.197 Sum_probs=96.1
Q ss_pred HHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCC--CeEEEEEccccCCChHHHHHHHHHHHHHhhh-ccccc
Q 014789 44 VSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPD--TISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-LLFSK 119 (418)
Q Consensus 44 l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~--~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-~~~~~ 119 (418)
|...+..+. +++++|+||+|+|||++++.+++.+....+. ..+....+|.. +...-..... ..+..
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~----------~~~~~~~d~~~~~~~~ 73 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRL----------IEAGNHPDLHRLEPEG 73 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHH----------HHcCCCCcEEEecccc
Confidence 444455544 6779999999999999999999998754210 01111111111 0000000000 00000
Q ss_pred CCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhccc
Q 014789 120 MASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRF 199 (418)
Q Consensus 120 ~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~ 199 (418)
....-+....+.+.+......+.+.|+||||+|.+....++.|...++. .+....+|++++. ...+.+.++||+
T Consensus 74 ~~~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~---~~~~~~~il~~~~---~~~l~~~i~sr~ 147 (188)
T TIGR00678 74 QSIKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEE---PPPNTLFILITPS---PEKLLPTIRSRC 147 (188)
T ss_pred CcCCHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcC---CCCCeEEEEEECC---hHhChHHHHhhc
Confidence 0011122223344444433345788999999999987655656555544 3346677777765 367888999999
Q ss_pred CceEEEecCCCHHHHHHHHHHH
Q 014789 200 SHRKLLFLPPSKEDMQRLLEHI 221 (418)
Q Consensus 200 ~~~~i~~~~~~~~e~~~il~~~ 221 (418)
..+.|.|++.+++.+++..+
T Consensus 148 --~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 148 --QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred --EEeeCCCCCHHHHHHHHHHc
Confidence 57999999999999999886
No 112
>PRK09087 hypothetical protein; Validated
Probab=99.51 E-value=4.5e-13 Score=119.24 Aligned_cols=207 Identities=11% Similarity=0.075 Sum_probs=125.9
Q ss_pred CCCCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHH
Q 014789 21 DPNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCC 100 (418)
Q Consensus 21 ~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~ 100 (418)
.+++.+++.++|-.... ....+.... +...+.++|+||+|+|||++++.+++... +.|++.....
T Consensus 15 ~~~~~~~~Fi~~~~N~~--a~~~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~~--------~~~i~~~~~~---- 79 (226)
T PRK09087 15 DPAYGRDDLLVTESNRA--AVSLVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKSD--------ALLIHPNEIG---- 79 (226)
T ss_pred CCCCChhceeecCchHH--HHHHHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhcC--------CEEecHHHcc----
Confidence 34455544444443322 222444432 23355699999999999999998876531 2345432111
Q ss_pred HHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEE
Q 014789 101 AFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIG 180 (418)
Q Consensus 101 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~ 180 (418)
.++...+ . .-+|+|||+|.+. ..+..|+.+++...... ..++++
T Consensus 80 --~~~~~~~-------------------------~-------~~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g-~~ilit 123 (226)
T PRK09087 80 --SDAANAA-------------------------A-------EGPVLIEDIDAGG-FDETGLFHLINSVRQAG-TSLLMT 123 (226)
T ss_pred --hHHHHhh-------------------------h-------cCeEEEECCCCCC-CCHHHHHHHHHHHHhCC-CeEEEE
Confidence 1111111 0 1278889999874 35777888887765443 334444
Q ss_pred eccCCChHHHHHHHhhcccC-ceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHh
Q 014789 181 VSCRLDADQLLEKRVRSRFS-HRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLV 259 (418)
Q Consensus 181 ~s~~~~~~~~l~~~v~sr~~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (418)
++..........++++||+. ...+.+.|++.+++.++++.++.. .++ .++++.+..++++.
T Consensus 124 s~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~---~~~--------------~l~~ev~~~La~~~- 185 (226)
T PRK09087 124 SRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD---RQL--------------YVDPHVVYYLVSRM- 185 (226)
T ss_pred CCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHHHHHHh-
Confidence 44443333445788999996 457899999999999999998751 011 23444455555543
Q ss_pred ccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhcc
Q 014789 260 NLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNS 298 (418)
Q Consensus 260 ~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~ 298 (418)
.|++|.+..++.+....+.....+||...++++++.+
T Consensus 186 --~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 186 --ERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNEM 222 (226)
T ss_pred --hhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhh
Confidence 4899988876655333322344679999999888764
No 113
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.50 E-value=2.1e-13 Score=136.32 Aligned_cols=234 Identities=13% Similarity=0.134 Sum_probs=141.4
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhC----CCCeEEEEEccccCC-ChHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEY----PDTISVIKLNGLLHS-DDCCAFK 103 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~----~~~~~~v~in~~~~~-~~~~~~~ 103 (418)
.++|.+..++.+...+ ....+.+++|+||||||||++++.+.+...... ...-.++.+||.... ++..+-.
T Consensus 66 ~iiGqs~~i~~l~~al----~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~ 141 (531)
T TIGR02902 66 EIIGQEEGIKALKAAL----CGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIAD 141 (531)
T ss_pred HeeCcHHHHHHHHHHH----hCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccch
Confidence 4899999988887543 445678999999999999999999987654321 112356788886422 1111111
Q ss_pred HHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhc-------------
Q 014789 104 EIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ------------- 170 (418)
Q Consensus 104 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~------------- 170 (418)
.++....... ...............-...+. .....+|+|||+|.|....|+.|..+++...
T Consensus 142 ~li~~~~~p~-~~~~~~~g~~g~~~~~~G~l~----~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~ 216 (531)
T TIGR02902 142 PLIGSVHDPI-YQGAGPLGIAGIPQPKPGAVT----RAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENP 216 (531)
T ss_pred hhcCCcccch-hccccccccCCcccccCchhh----ccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCc
Confidence 1111000000 000000000000000000111 1245799999999999887777777664311
Q ss_pred ------------cCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHH
Q 014789 171 ------------SVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEF 238 (418)
Q Consensus 171 ------------~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~ 238 (418)
..+.++.+|++|+.. ++.+.+.++||+ ..+.|+||+.+++.+|++..+.- .
T Consensus 217 ~~~~~~~~~~~~~~~~d~rlI~ATt~~--p~~L~paLrsR~--~~I~f~pL~~eei~~Il~~~a~k---~---------- 279 (531)
T TIGR02902 217 NIPSHIHDIFQNGLPADFRLIGATTRN--PEEIPPALRSRC--VEIFFRPLLDEEIKEIAKNAAEK---I---------- 279 (531)
T ss_pred ccccchhhhcccCcccceEEEEEecCC--cccCChHHhhhh--heeeCCCCCHHHHHHHHHHHHHH---c----------
Confidence 112456777776653 456789999998 57899999999999999998751 0
Q ss_pred HHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHh
Q 014789 239 NKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALS 296 (418)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~ 296 (418)
.-.++++++. .+.. ++.|.|.+.++++.|...+. .+...|+.+|+..++.
T Consensus 280 ----~i~is~~al~-~I~~---y~~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 280 ----GINLEKHALE-LIVK---YASNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred ----CCCcCHHHHH-HHHH---hhhhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 0012344333 3333 23478999999999876654 3556799999998875
No 114
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=99.49 E-value=1e-13 Score=120.32 Aligned_cols=144 Identities=23% Similarity=0.295 Sum_probs=74.7
Q ss_pred CCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC-h----HHHHHH
Q 014789 30 SDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD-D----CCAFKE 104 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~-~----~~~~~~ 104 (418)
++||++|++++...+. ....+.+++++|+|++|+|||++++.+.+.+.... ..+++++|..... + ..++++
T Consensus 2 fvgR~~e~~~l~~~l~-~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERG---GYVISINCDDSERNPYSPFRSALRQ 77 (185)
T ss_dssp -TT-HHHHHHHHHTTG-GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT-----EEEEEEETTTS-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcC---CEEEEEEEeccccchhhHHHHHHHH
Confidence 7899999999999998 66777789999999999999999999999998874 2267777766521 2 334444
Q ss_pred HHHHHHHhhhc-------------------------------ccccCCChHhHH----HHHHHHHhhcCCCceEEEEEec
Q 014789 105 IARQLCMEHQL-------------------------------LFSKMASFDDNS----QFMIEMLRECGLAHKTIIFVLD 149 (418)
Q Consensus 105 i~~~l~~~~~~-------------------------------~~~~~~~~~~~~----~~l~~~l~~~~~~~~~~viilD 149 (418)
++.++...... ............ ..+.+.+.......+|++|+||
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~vlviD 157 (185)
T PF13191_consen 78 LIDQLLDQSQATTRSPLREKLAASLDDDAADLLVLLPDLDRLEAASALDPDSLEDRLEELLREILRELAARRKPLVLVID 157 (185)
T ss_dssp HS------------------------------------------SS---HHHHH----HHHHHHHTTS-SE---EEEEEE
T ss_pred HHHHhhccccccccccccccccccccccccccccccccccccccccCCCHHHHHhHHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 44443221100 000001111222 3344444444433457999999
Q ss_pred chhhhhhcchhHHHHHHhhhccCCCcEEEE
Q 014789 150 EFDLFAQGKQRLLYSLLDAMQSVTSQAVVI 179 (418)
Q Consensus 150 Eid~l~~~~~~~L~~l~~~~~~~~~~~~lI 179 (418)
++|++....+.+|..+++..+. .+++||
T Consensus 158 d~d~~~~~~~~~l~~l~~~~~~--~~~~vv 185 (185)
T PF13191_consen 158 DLDWADPASLDLLRALARRLQN--DPLLVV 185 (185)
T ss_dssp TTTHHHTTHHHHHHH---------------
T ss_pred CCCCCCcHHHHHHHhccccccc--ccccCC
Confidence 9999988888888888876553 255554
No 115
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.49 E-value=4e-13 Score=123.78 Aligned_cols=142 Identities=13% Similarity=0.105 Sum_probs=93.2
Q ss_pred cCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHH
Q 014789 50 EACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQF 129 (418)
Q Consensus 50 ~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 129 (418)
-..+..++|+||||||||.+++++++++.. .++.+++....+. . .+..+..+..
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~------~~i~vsa~eL~sk----------~----------vGEsEk~IR~ 198 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGI------EPIVMSAGELESE----------N----------AGEPGKLIRQ 198 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCC------CeEEEEHHHhhcC----------c----------CCcHHHHHHH
Confidence 356888999999999999999999999864 3466665443221 0 0112222222
Q ss_pred HHHHHhhc-CCCceEEEEEecchhhhhhc---------chhHHHHHHhhhc--------------cCCCcEEEEEeccCC
Q 014789 130 MIEMLREC-GLAHKTIIFVLDEFDLFAQG---------KQRLLYSLLDAMQ--------------SVTSQAVVIGVSCRL 185 (418)
Q Consensus 130 l~~~l~~~-~~~~~~~viilDEid~l~~~---------~~~~L~~l~~~~~--------------~~~~~~~lI~~s~~~ 185 (418)
++...... ..++.|+||+|||+|.+... .|-+..+|+..+. ....++.||++||+
T Consensus 199 ~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNr- 277 (413)
T PLN00020 199 RYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGND- 277 (413)
T ss_pred HHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCC-
Confidence 33222221 12457999999999998875 1222234443321 23457899999999
Q ss_pred ChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 186 DADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 186 ~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
++.|++.+.+ ||.. . +..++.++..+|++..+.
T Consensus 278 --pd~LDpALlRpGRfDk-~--i~lPd~e~R~eIL~~~~r 312 (413)
T PLN00020 278 --FSTLYAPLIRDGRMEK-F--YWAPTREDRIGVVHGIFR 312 (413)
T ss_pred --cccCCHhHcCCCCCCc-e--eCCCCHHHHHHHHHHHhc
Confidence 5678888887 8863 2 357889999999998765
No 116
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=5.7e-13 Score=115.48 Aligned_cols=214 Identities=19% Similarity=0.269 Sum_probs=126.1
Q ss_pred CCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
.+-|.++++++|.+.+--.+.. .++..+++|||||||||.++++++.+-...+ ..+.+.
T Consensus 172 DiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTF------LKLAgP------ 239 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATF------LKLAGP------ 239 (424)
T ss_pred ccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchH------HHhcch------
Confidence 4678999999998776332222 3478899999999999999999987754332 111111
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----------chhHHHHHHhh
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----------KQRLLYSLLDA 168 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----------~~~~L~~l~~~ 168 (418)
||..-. + +.-......-+.+.+ ...|.||+|||+|.+..+ .|..+..|++.
T Consensus 240 --------QLVQMf---I---GdGAkLVRDAFaLAK----EkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQ 301 (424)
T KOG0652|consen 240 --------QLVQMF---I---GDGAKLVRDAFALAK----EKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQ 301 (424)
T ss_pred --------HHHhhh---h---cchHHHHHHHHHHhh----ccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHh
Confidence 110000 0 001111222222222 347999999999998874 23444455544
Q ss_pred hcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHH---HhcCCCCCCCChHHHHHHHHH
Q 014789 169 MQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEH---ILSLPVDSSLPHAYAVEFNKK 241 (418)
Q Consensus 169 ~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~---~l~~~~~~~~~~~~~~~~~~~ 241 (418)
... ....+-+|++||+.+ .|+|++.+ |+. +.|.||-++.+....|++- .+.+..+
T Consensus 302 LDGFss~~~vKviAATNRvD---iLDPALlRSGRLD-RKIEfP~Pne~aRarIlQIHsRKMnv~~D-------------- 363 (424)
T KOG0652|consen 302 LDGFSSDDRVKVIAATNRVD---ILDPALLRSGRLD-RKIEFPHPNEEARARILQIHSRKMNVSDD-------------- 363 (424)
T ss_pred hcCCCCccceEEEeeccccc---ccCHHHhhccccc-ccccCCCCChHHHHHHHHHhhhhcCCCCC--------------
Confidence 332 346899999999966 46677653 665 6799999997766555543 3332222
Q ss_pred HHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccC
Q 014789 242 IKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSH 299 (418)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~ 299 (418)
-.++++.+..-...|-. ...+|-.|+-.|- .+...|+-++|.+++.++.
T Consensus 364 -------vNfeELaRsTddFNGAQ--cKAVcVEAGMiALRr~atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 364 -------VNFEELARSTDDFNGAQ--CKAVCVEAGMIALRRGATEVTHEDFMEGILEVQ 413 (424)
T ss_pred -------CCHHHHhhcccccCchh--heeeehhhhHHHHhcccccccHHHHHHHHHHHH
Confidence 12333333222223322 2334545544432 3667899999998877654
No 117
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.6e-12 Score=118.59 Aligned_cols=161 Identities=20% Similarity=0.293 Sum_probs=107.1
Q ss_pred CCCChhhhHHHHHHHHHHHHhcC----------CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEA----------CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~----------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
.+-|.+..++++.+.+.--++.+ ++.+++++||||||||.++++++++....+ +-+.....++.
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~f------Inv~~s~lt~K 166 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANF------INVSVSNLTSK 166 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCc------ceeeccccchh
Confidence 46778888888877654433322 367899999999999999999999876543 33444444331
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcch-----------hHHHHHHh
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQ-----------RLLYSLLD 167 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~-----------~~L~~l~~ 167 (418)
-+.+ ...+.+.++.+-. +=.|.+|+|||+|.+...++ ..+..+.|
T Consensus 167 --WfgE------------------~eKlv~AvFslAs----Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WD 222 (386)
T KOG0737|consen 167 --WFGE------------------AQKLVKAVFSLAS----KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWD 222 (386)
T ss_pred --hHHH------------------HHHHHHHHHhhhh----hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhc
Confidence 1110 0112222333222 23699999999999985311 11222222
Q ss_pred hhc-cCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 168 AMQ-SVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 168 ~~~-~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
-.. .....+.|.|+||+ +..++.++.+|+. +++++.-++.++..+||+-.|.
T Consensus 223 Gl~s~~~~rVlVlgATNR---P~DlDeAiiRR~p-~rf~V~lP~~~qR~kILkviLk 275 (386)
T KOG0737|consen 223 GLSSKDSERVLVLGATNR---PFDLDEAIIRRLP-RRFHVGLPDAEQRRKILKVILK 275 (386)
T ss_pred cccCCCCceEEEEeCCCC---CccHHHHHHHhCc-ceeeeCCCchhhHHHHHHHHhc
Confidence 222 22346999999999 6678999999996 5688888889999999999886
No 118
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.47 E-value=2.2e-12 Score=135.02 Aligned_cols=168 Identities=16% Similarity=0.178 Sum_probs=107.5
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc--CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE--ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEI 105 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~--~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i 105 (418)
+..+|.++..+.+.+++...... ..+.+++++||||||||++++.+++.+... ++.+++....+... +
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~------~~~i~~~~~~~~~~----i 389 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK------FVRFSLGGVRDEAE----I 389 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC------eEEEeCCCcccHHH----H
Confidence 34678888888888876543222 235679999999999999999999988643 35565543332211 1
Q ss_pred HHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcch----hHHHHHHhhhcc----------
Q 014789 106 ARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQ----RLLYSLLDAMQS---------- 171 (418)
Q Consensus 106 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~----~~L~~l~~~~~~---------- 171 (418)
.. .. ..+ .+..... +.+.+.... ...| ||+|||+|.+....+ +.|..+++..+.
T Consensus 390 ~g----~~-~~~-~g~~~g~----i~~~l~~~~-~~~~-villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~ 457 (775)
T TIGR00763 390 RG----HR-RTY-VGAMPGR----IIQGLKKAK-TKNP-LFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDV 457 (775)
T ss_pred cC----CC-Cce-eCCCCch----HHHHHHHhC-cCCC-EEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCc
Confidence 10 00 000 0111111 222233221 1223 789999999987522 566666653111
Q ss_pred --CCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHh
Q 014789 172 --VTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHIL 222 (418)
Q Consensus 172 --~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l 222 (418)
..+++++|+++|. .+.+.+.+.+|| ..|.|++|+.++..+|++..+
T Consensus 458 ~~d~s~v~~I~TtN~---~~~i~~~L~~R~--~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 458 PFDLSKVIFIATANS---IDTIPRPLLDRM--EVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred eeccCCEEEEEecCC---chhCCHHHhCCe--eEEecCCCCHHHHHHHHHHHH
Confidence 1257889999988 457889999999 579999999999999998765
No 119
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.47 E-value=3.8e-13 Score=121.16 Aligned_cols=181 Identities=24% Similarity=0.331 Sum_probs=98.8
Q ss_pred CCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHH----
Q 014789 30 SDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEI---- 105 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i---- 105 (418)
++||++|++.|.+.+.. +....++|+||+|+|||++++.+.+.+.... ...+++++..... ...+..+
T Consensus 1 F~gR~~el~~l~~~l~~----~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~---~~~~y~~~~~~~~-~~~~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLES----GPSQHILLYGPRGSGKTSLLKEFINELKEKG---YKVVYIDFLEESN-ESSLRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH------SSEEEEEESTTSSHHHHHHHHHHHCT--E---ECCCHHCCTTBSH-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh----hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC---CcEEEEecccchh-hhHHHHHHHHH
Confidence 57999999999887644 4578999999999999999999999885543 3345555543332 2222222
Q ss_pred ------HHHHHHhhh-cc---cc--cCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhh-h--cchhHHHHHHhhhc
Q 014789 106 ------ARQLCMEHQ-LL---FS--KMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFA-Q--GKQRLLYSLLDAMQ 170 (418)
Q Consensus 106 ------~~~l~~~~~-~~---~~--~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~-~--~~~~~L~~l~~~~~ 170 (418)
...+..... .. .. ...........+.+.+.... ..+||+|||+|.+. . .....+..+....+
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~---~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~ 149 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKG---KKVIIVIDEFQYLAIASEEDKDFLKSLRSLLD 149 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCH---CCEEEEEETGGGGGBCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcC---CcEEEEEecHHHHhhcccchHHHHHHHHHHHh
Confidence 111211110 00 00 01122344555566665532 34999999999999 2 23455666555444
Q ss_pred c--CCCcEEEEEeccCCChHHHHH---HHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 171 S--VTSQAVVIGVSCRLDADQLLE---KRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 171 ~--~~~~~~lI~~s~~~~~~~~l~---~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
. ...++.+|.+++...+...+. .....|+ ..+.++|++.++..+++.....
T Consensus 150 ~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~--~~~~l~~l~~~e~~~~~~~~~~ 205 (234)
T PF01637_consen 150 SLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRF--SHIELKPLSKEEAREFLKELFK 205 (234)
T ss_dssp H----TTEEEEEEESSHHHHHHTT-TTSTTTT-----EEEE----HHHHHHHHHHHHH
T ss_pred hccccCCceEEEECCchHHHHHhhcccCcccccc--ceEEEeeCCHHHHHHHHHHHHH
Confidence 3 335666666665533332211 1233454 3489999999999999999754
No 120
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.9e-13 Score=120.19 Aligned_cols=213 Identities=18% Similarity=0.219 Sum_probs=133.3
Q ss_pred CCCChhhhHHHHHHHHHHHHhcC---------CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEA---------CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~---------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
.+-|.+.++++|.+.++--+..+ ++..+++||+||||||.++++++++-...+
T Consensus 186 diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF------------------ 247 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF------------------ 247 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh------------------
Confidence 36689999999998876554443 478899999999999999999987644322
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----------chhHHHHHHhh
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----------KQRLLYSLLDA 168 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----------~~~~L~~l~~~ 168 (418)
++-+-+.|-.+.. +.-......++....+. .|.|+||||||.+.++ -|.-+..|++.
T Consensus 248 --lRvvGseLiQkyl------GdGpklvRqlF~vA~e~----apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQ 315 (440)
T KOG0726|consen 248 --LRVVGSELIQKYL------GDGPKLVRELFRVAEEH----APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQ 315 (440)
T ss_pred --hhhhhHHHHHHHh------ccchHHHHHHHHHHHhc----CCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHh
Confidence 2222222222110 01113445556555553 6999999999999875 13344455544
Q ss_pred hcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHH---HHHHHHHHhcCCCCCCCChHHHHHHHHH
Q 014789 169 MQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKED---MQRLLEHILSLPVDSSLPHAYAVEFNKK 241 (418)
Q Consensus 169 ~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e---~~~il~~~l~~~~~~~~~~~~~~~~~~~ 241 (418)
... ....+-+|.+||+ .+.|+|.+.+ |+. +.|.|+-++... +++|...++.+..+.
T Consensus 316 ldGFdsrgDvKvimATnr---ie~LDPaLiRPGrID-rKIef~~pDe~TkkkIf~IHTs~Mtl~~dV------------- 378 (440)
T KOG0726|consen 316 LDGFDSRGDVKVIMATNR---IETLDPALIRPGRID-RKIEFPLPDEKTKKKIFQIHTSRMTLAEDV------------- 378 (440)
T ss_pred ccCccccCCeEEEEeccc---ccccCHhhcCCCccc-cccccCCCchhhhceeEEEeecccchhccc-------------
Confidence 332 3468999999999 4578888865 554 679999888554 445555665543322
Q ss_pred HHHHhCChhHHHHHHHHhcccc-CHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccC
Q 014789 242 IKNILADGRFKEIVNTLVNLDS-TVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSH 299 (418)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~g-d~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~ 299 (418)
.++.++..--..+| | +..+|..|+..|. .....++.+||.+|.+.+.
T Consensus 379 --------nle~li~~kddlSGAd---IkAictEaGllAlRerRm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 379 --------NLEELIMTKDDLSGAD---IKAICTEAGLLALRERRMKVTMEDFKKAKEKVL 427 (440)
T ss_pred --------cHHHHhhccccccccc---HHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHH
Confidence 12222222222333 3 3345666655543 2556899999999987653
No 121
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=99.47 E-value=9.1e-12 Score=113.94 Aligned_cols=184 Identities=17% Similarity=0.141 Sum_probs=122.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
+.+++|+.|++.+...+..--. .-+.+++|+|..|||||.+++.+++.... ..+++||...-+...++..|+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~-~~PS~~~iyG~sgTGKT~~~r~~l~~~n~------~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSC-TIPSIVHIYGHSGTGKTYLVRQLLRKLNL------ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCc-ccceeEEEeccCCCchhHHHHHHHhhcCC------cceeeehHHhccHHHHHHHHHH
Confidence 4789999999999988755311 23566799999999999999999998743 3489999999998889999998
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhh---cCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRE---CGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
++.......... ....+.+..+...+.+ ....+..++||+|.+|.+.+..-.+|..++++.+..+.+.+.|..+..
T Consensus 79 ~~~~~d~dg~~~-~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~ 157 (438)
T KOG2543|consen 79 KSQLADKDGDKV-EGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP 157 (438)
T ss_pred HhccCCCchhhh-hhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecc
Confidence 884111000000 1112333333334433 122346899999999999877777888888877664444333333322
Q ss_pred CChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHH
Q 014789 185 LDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHI 221 (418)
Q Consensus 185 ~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~ 221 (418)
.- ... -..-.+-+....++||.|+.+++..|+..-
T Consensus 158 ~~-e~~-y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 158 SC-EKQ-YLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cc-HHH-hhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 21 111 111123344457899999999999998774
No 122
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.46 E-value=5e-12 Score=132.03 Aligned_cols=162 Identities=21% Similarity=0.343 Sum_probs=109.5
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.+.|.+++++.|.+.+...+.. ..+.+++|+||||||||++++.+++.+. ..++.++|....+.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~------~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG------AYFISINGPEIMSK 251 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC------CeEEEEecHHHhcc
Confidence 45889999999999988654332 3467899999999999999999998764 33467776432211
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc--------hhHHHHHHhhhc
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK--------QRLLYSLLDAMQ 170 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~--------~~~L~~l~~~~~ 170 (418)
. . +...+....+++.... ..|.||+|||+|.+.... ...+..|+....
T Consensus 252 ~--~------------------g~~~~~l~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld 307 (733)
T TIGR01243 252 Y--Y------------------GESEERLREIFKEAEE----NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMD 307 (733)
T ss_pred c--c------------------cHHHHHHHHHHHHHHh----cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhh
Confidence 0 0 0111222223333222 257899999999987541 234445554443
Q ss_pred c--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 171 S--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 171 ~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
. ....+++|+++|. ++.+++.+.+ ||. +.+.+++++.++..+|++....
T Consensus 308 ~l~~~~~vivI~atn~---~~~ld~al~r~gRfd-~~i~i~~P~~~~R~~Il~~~~~ 360 (733)
T TIGR01243 308 GLKGRGRVIVIGATNR---PDALDPALRRPGRFD-REIVIRVPDKRARKEILKVHTR 360 (733)
T ss_pred ccccCCCEEEEeecCC---hhhcCHHHhCchhcc-EEEEeCCcCHHHHHHHHHHHhc
Confidence 2 2357899999987 4567777765 776 5789999999999999997654
No 123
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.45 E-value=3.9e-12 Score=130.09 Aligned_cols=215 Identities=17% Similarity=0.245 Sum_probs=130.4
Q ss_pred CCChhhhHHHHHHHHHHHH--------hcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHH
Q 014789 30 SDSPDSNYSKLKFLVSSSV--------TEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCA 101 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~--------~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~ 101 (418)
+.|.+...+.+.+.+.... ....+.+++|+||||||||++++.++..+.. .++.+++.....
T Consensus 154 i~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~------~f~~is~~~~~~---- 223 (644)
T PRK10733 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV------PFFTISGSDFVE---- 223 (644)
T ss_pred HcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC------CEEEEehHHhHH----
Confidence 4566666666666554321 1123567999999999999999999887643 345666543211
Q ss_pred HHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc-----------hhHHHHHHhhhc
Q 014789 102 FKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK-----------QRLLYSLLDAMQ 170 (418)
Q Consensus 102 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~-----------~~~L~~l~~~~~ 170 (418)
.... .+ ......+++.... ..|.||+|||+|.+.... ...+..++....
T Consensus 224 ---~~~g------------~~-~~~~~~~f~~a~~----~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~md 283 (644)
T PRK10733 224 ---MFVG------------VG-ASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD 283 (644)
T ss_pred ---hhhc------------cc-HHHHHHHHHHHHh----cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhh
Confidence 0000 00 1111222222222 368999999999996531 235566654433
Q ss_pred c--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHHHH
Q 014789 171 S--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS-LPVDSSLPHAYAVEFNKKIKNI 245 (418)
Q Consensus 171 ~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~-~~~~~~~~~~~~~~~~~~~~~~ 245 (418)
. ....+++|++||+ ++.+++++.+ ||. +.|.++.++.++..+|++..+. .+...
T Consensus 284 g~~~~~~vivIaaTN~---p~~lD~Al~RpgRfd-r~i~v~~Pd~~~R~~Il~~~~~~~~l~~----------------- 342 (644)
T PRK10733 284 GFEGNEGIIVIAATNR---PDVLDPALLRPGRFD-RQVVVGLPDVRGREQILKVHMRRVPLAP----------------- 342 (644)
T ss_pred cccCCCCeeEEEecCC---hhhcCHHHhCCcccc-eEEEcCCCCHHHHHHHHHHHhhcCCCCC-----------------
Confidence 2 2357899999998 6788888875 886 6899999999999999998875 11111
Q ss_pred hCChhHHHHHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccC
Q 014789 246 LADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSH 299 (418)
Q Consensus 246 ~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~ 299 (418)
+-.+..+.+...+. ....+.++|..|...|. .+...|+.+|+.+|...+.
T Consensus 343 --~~d~~~la~~t~G~--sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~ 393 (644)
T PRK10733 343 --DIDAAIIARGTPGF--SGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 393 (644)
T ss_pred --cCCHHHHHhhCCCC--CHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHh
Confidence 11122223222222 33445555555544432 3667899999999887553
No 124
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.45 E-value=9.5e-13 Score=141.34 Aligned_cols=215 Identities=13% Similarity=0.143 Sum_probs=121.1
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH--HHH------H---------HHHHHHHHhh
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC--CAF------K---------EIARQLCMEH 113 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~--~~~------~---------~i~~~l~~~~ 113 (418)
..+.++|++||||||||.+|+++|.+.. +.++.+++....... ..+ . .+-..+....
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~------VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSY------VPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcC------CceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 4578999999999999999999998764 334555553322100 000 0 0000000000
Q ss_pred hccc---c--cCCChH-hHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchh--HHHHHHhhhcc-----CCCcEEEEE
Q 014789 114 QLLF---S--KMASFD-DNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQR--LLYSLLDAMQS-----VTSQAVVIG 180 (418)
Q Consensus 114 ~~~~---~--~~~~~~-~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~--~L~~l~~~~~~-----~~~~~~lI~ 180 (418)
-..+ . .+.+.. .....+++..+. ..|+||+|||||.+...... .+..|+..... ...+++|||
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk----~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIA 1777 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAKA----MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIA 1777 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHHH----CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEE
Confidence 0000 0 000000 012334444444 36999999999999876221 24445444331 235799999
Q ss_pred eccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHh---cCCCCCCCChHHHHHHHHHHHHHhCChhHHHHH
Q 014789 181 VSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHIL---SLPVDSSLPHAYAVEFNKKIKNILADGRFKEIV 255 (418)
Q Consensus 181 ~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (418)
+||+ ++.+||++.+ ||. +.|.++.++..+..+++...+ .+..+.. ...+..++
T Consensus 1778 ATNR---PD~LDPALLRPGRFD-R~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~------------------~vdl~~LA 1835 (2281)
T CHL00206 1778 STHI---PQKVDPALIAPNKLN-TCIKIRRLLIPQQRKHFFTLSYTRGFHLEKK------------------MFHTNGFG 1835 (2281)
T ss_pred eCCC---cccCCHhHcCCCCCC-eEEEeCCCCchhHHHHHHHHHhhcCCCCCcc------------------cccHHHHH
Confidence 9998 6688999987 887 678998888766666554321 1111100 01123334
Q ss_pred HHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccC
Q 014789 256 NTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSH 299 (418)
Q Consensus 256 ~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~ 299 (418)
+...+. ..+.+..+|..|+..|- .+...|+.+++..|+.++.
T Consensus 1836 ~~T~Gf--SGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1836 SITMGS--NARDLVALTNEALSISITQKKSIIDTNTIRSALHRQT 1878 (2281)
T ss_pred HhCCCC--CHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 333232 34556666766665543 4667889999998887654
No 125
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.44 E-value=5.3e-12 Score=130.97 Aligned_cols=168 Identities=15% Similarity=0.175 Sum_probs=109.7
Q ss_pred CCCCChhhhHHHHHHHHHHHHh--cCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVT--EACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEI 105 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~--~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i 105 (418)
...+|.++..+.|.+++..... ...+..++|+||||+|||++++.++..+... ++.+++....+...+...-
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~------~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK------YVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC------EEEEEcCCCCCHHHhccch
Confidence 3467888888888887764332 2346789999999999999999999887643 3445543333321111100
Q ss_pred HHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc----hhHHHHHHhhhcc----------
Q 014789 106 ARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK----QRLLYSLLDAMQS---------- 171 (418)
Q Consensus 106 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~----~~~L~~l~~~~~~---------- 171 (418)
.. + .+..... +...+.... . ...||+|||+|.+.... ++.|+.+++-.+.
T Consensus 396 -~~--------~-~g~~~G~----~~~~l~~~~-~-~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~ 459 (784)
T PRK10787 396 -RT--------Y-IGSMPGK----LIQKMAKVG-V-KNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEV 459 (784)
T ss_pred -hc--------c-CCCCCcH----HHHHHHhcC-C-CCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccc
Confidence 00 0 0011111 222233322 1 23478999999998753 4778877763221
Q ss_pred --CCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 172 --VTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 172 --~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
.-+++++|+|+|... +.+++.+|+ ..|.|.+|+.++..+|.+..+.
T Consensus 460 ~~dls~v~~i~TaN~~~----i~~aLl~R~--~ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 460 DYDLSDVMFVATSNSMN----IPAPLLDRM--EVIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred cccCCceEEEEcCCCCC----CCHHHhcce--eeeecCCCCHHHHHHHHHHhhh
Confidence 126889999988753 788999999 5799999999999999998873
No 126
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.44 E-value=4.5e-12 Score=120.43 Aligned_cols=182 Identities=20% Similarity=0.145 Sum_probs=111.6
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeE--EEEEccccCCChHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTIS--VIKLNGLLHSDDCCAFKEIA 106 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~--~v~in~~~~~~~~~~~~~i~ 106 (418)
.++|.++..+.|.+.+.. +.-++.++|+||+|+||++++..+++.+....+.... .....+..........+.+.
T Consensus 20 ~iiGq~~~~~~L~~~~~~---~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~ 96 (365)
T PRK07471 20 ALFGHAAAEAALLDAYRS---GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA 96 (365)
T ss_pred hccChHHHHHHHHHHHHc---CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH
Confidence 578988888877766533 2336779999999999999999999998754311000 00000000000011222222
Q ss_pred HHHHHhhh-ccc---cc------CCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcE
Q 014789 107 RQLCMEHQ-LLF---SK------MASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQA 176 (418)
Q Consensus 107 ~~l~~~~~-~~~---~~------~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~ 176 (418)
..-..... +.+ .+ ....++ .+.+.+.+......+.+.|+||||+|.+....++.|..+++. .....
T Consensus 97 ~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe---pp~~~ 172 (365)
T PRK07471 97 AGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE---PPARS 172 (365)
T ss_pred ccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc---CCCCe
Confidence 21111110 000 01 112233 444555555555567899999999999987655555555543 33556
Q ss_pred EEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHh
Q 014789 177 VVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHIL 222 (418)
Q Consensus 177 ~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l 222 (418)
.+|.+|+. .+.+.+.+.||+ +.+.|+|++.+++.+++....
T Consensus 173 ~~IL~t~~---~~~llpti~SRc--~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 173 LFLLVSHA---PARLLPTIRSRC--RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred EEEEEECC---chhchHHhhccc--eEEECCCCCHHHHHHHHHHhc
Confidence 77777776 345778999999 679999999999999998874
No 127
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.44 E-value=4.1e-12 Score=133.65 Aligned_cols=185 Identities=17% Similarity=0.193 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHhhcCCCCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhC-C---
Q 014789 7 AAEKASNLLRSRLCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEY-P--- 82 (418)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~-~--- 82 (418)
.+++.-.-+..+.-. ..+ +.++||+.+++.+...|.+ ...++++|+||||+|||++++.++..+.... +
T Consensus 160 ~l~~~~~~l~~~~r~-~~l--~~vigr~~ei~~~i~iL~r----~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l 232 (857)
T PRK10865 160 ALKKYTIDLTERAEQ-GKL--DPVIGRDEEIRRTIQVLQR----RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGL 232 (857)
T ss_pred HHHHHhhhHHHHHhc-CCC--CcCCCCHHHHHHHHHHHhc----CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhh
Confidence 455554444444333 222 2489999999888887644 4577899999999999999999999876422 1
Q ss_pred CCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc----
Q 014789 83 DTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK---- 158 (418)
Q Consensus 83 ~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~---- 158 (418)
.+..++.++..... ... ...+.+++.++.+++.+.. ...+.||||||+|.+...+
T Consensus 233 ~~~~~~~l~l~~l~----------ag~--------~~~g~~e~~lk~~~~~~~~---~~~~~ILfIDEih~l~~~~~~~~ 291 (857)
T PRK10865 233 KGRRVLALDMGALV----------AGA--------KYRGEFEERLKGVLNDLAK---QEGNVILFIDELHTMVGAGKADG 291 (857)
T ss_pred CCCEEEEEehhhhh----------hcc--------chhhhhHHHHHHHHHHHHH---cCCCeEEEEecHHHhccCCCCcc
Confidence 12344444322110 000 0001233333334433332 2368999999999998541
Q ss_pred hhHHHHHHhhhccCCCcEEEEEeccCCChHH--HHHHHhhcccCceEEEecCCCHHHHHHHHHHHh
Q 014789 159 QRLLYSLLDAMQSVTSQAVVIGVSCRLDADQ--LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHIL 222 (418)
Q Consensus 159 ~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~--~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l 222 (418)
..-..+++. +....+.+.+||+|+..++.. ..++.+.+||. .|.++.++.++...|++...
T Consensus 292 ~~d~~~~lk-p~l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~--~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 292 AMDAGNMLK-PALARGELHCVGATTLDEYRQYIEKDAALERRFQ--KVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred chhHHHHhc-chhhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCC--EEEeCCCCHHHHHHHHHHHh
Confidence 111222222 223457899999999977644 35889999994 57788889999988887654
No 128
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2e-12 Score=129.48 Aligned_cols=161 Identities=19% Similarity=0.286 Sum_probs=109.5
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcC---------CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEA---------CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~---------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
..+.|.++..++|.+++.- ++++ .|..++|+||||||||.++++++.+.. +.++.+++..+..-
T Consensus 311 kDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg------VPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG------VPFFSVSGSEFVEM 383 (774)
T ss_pred ccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC------CceeeechHHHHHH
Confidence 4578888877777776543 3443 388999999999999999999987643 55566666443211
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc------------hhHHHHHH
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK------------QRLLYSLL 166 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~------------~~~L~~l~ 166 (418)
.-.. . .. .+.+++... ....|+||+|||+|.+...+ ..-|.+|+
T Consensus 384 -------~~g~------------~-as---rvr~lf~~a-r~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll 439 (774)
T KOG0731|consen 384 -------FVGV------------G-AS---RVRDLFPLA-RKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLL 439 (774)
T ss_pred -------hccc------------c-hH---HHHHHHHHh-hccCCeEEEecccccccccccccccCCCChHHHHHHHHHH
Confidence 1100 1 11 122333322 23579999999999887642 24566666
Q ss_pred hhhcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 167 DAMQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 167 ~~~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
-.+.. ....++++++||+.+ .|++++.+ ||. ++|....++.....+|++..+.
T Consensus 440 ~emDgf~~~~~vi~~a~tnr~d---~ld~allrpGRfd-r~i~i~~p~~~~r~~i~~~h~~ 496 (774)
T KOG0731|consen 440 VEMDGFETSKGVIVLAATNRPD---ILDPALLRPGRFD-RQIQIDLPDVKGRASILKVHLR 496 (774)
T ss_pred HHhcCCcCCCcEEEEeccCCcc---ccCHHhcCCCccc-cceeccCCchhhhHHHHHHHhh
Confidence 44332 236799999999955 56677764 776 7899999999999999998875
No 129
>PRK04132 replication factor C small subunit; Provisional
Probab=99.43 E-value=1.3e-11 Score=127.14 Aligned_cols=197 Identities=17% Similarity=0.163 Sum_probs=133.2
Q ss_pred eEEEEC--CCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHH
Q 014789 55 SILLLG--PRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIE 132 (418)
Q Consensus 55 ~ill~G--~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 132 (418)
+-++.| |.+.||||++.++++++..+.. ...++.+|+...... ..++++...+.....
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~-~~~~lElNASd~rgi-d~IR~iIk~~a~~~~------------------ 625 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENW-RHNFLELNASDERGI-NVIREKVKEFARTKP------------------ 625 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccc-cCeEEEEeCCCcccH-HHHHHHHHHHHhcCC------------------
Confidence 445678 9999999999999999854321 256899999875432 245555544321110
Q ss_pred HHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHH
Q 014789 133 MLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKE 212 (418)
Q Consensus 133 ~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~ 212 (418)
. ...++.|+||||+|.|....|+.|..+++.+. ..+.+|+++|. ...+.+.++||| ..+.|+|++.+
T Consensus 626 ----~-~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~---~~~~FILi~N~---~~kIi~tIrSRC--~~i~F~~ls~~ 692 (846)
T PRK04132 626 ----I-GGASFKIIFLDEADALTQDAQQALRRTMEMFS---SNVRFILSCNY---SSKIIEPIQSRC--AIFRFRPLRDE 692 (846)
T ss_pred ----c-CCCCCEEEEEECcccCCHHHHHHHHHHhhCCC---CCeEEEEEeCC---hhhCchHHhhhc--eEEeCCCCCHH
Confidence 0 01145799999999998878888877776543 67789999987 567778999999 67999999999
Q ss_pred HHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHH
Q 014789 213 DMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFK 292 (418)
Q Consensus 213 e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~ 292 (418)
++.+.+.....- +++ .++++++..++ .. ..||+|.+++++..+... ...|+.++|.
T Consensus 693 ~i~~~L~~I~~~---Egi--------------~i~~e~L~~Ia-~~--s~GDlR~AIn~Lq~~~~~----~~~It~~~V~ 748 (846)
T PRK04132 693 DIAKRLRYIAEN---EGL--------------ELTEEGLQAIL-YI--AEGDMRRAINILQAAAAL----DDKITDENVF 748 (846)
T ss_pred HHHHHHHHHHHh---cCC--------------CCCHHHHHHHH-HH--cCCCHHHHHHHHHHHHHh----cCCCCHHHHH
Confidence 999988876530 111 12233333333 33 469999999999775432 2468998888
Q ss_pred HHHhccCCCchhhhhc
Q 014789 293 TALSNSHRQPKLECIK 308 (418)
Q Consensus 293 ~a~~~~~~~~~~~~l~ 308 (418)
.......++...+.+.
T Consensus 749 ~~~~~~~~~~I~~il~ 764 (846)
T PRK04132 749 LVASRARPEDIREMML 764 (846)
T ss_pred HHhCCCCHHHHHHHHH
Confidence 7765554444444444
No 130
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.43 E-value=1.7e-11 Score=124.56 Aligned_cols=228 Identities=17% Similarity=0.183 Sum_probs=136.4
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCC----CCeEEEEEccccCCC-hHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYP----DTISVIKLNGLLHSD-DCCAFK 103 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~----~~~~~v~in~~~~~~-~~~~~~ 103 (418)
.++|++..+..+...+ ....+.+++|+||||||||++++.+........+ ....++.++|..... ...+..
T Consensus 155 ~iiGqs~~~~~l~~~i----a~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 155 EIVGQERAIKALLAKV----ASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred hceeCcHHHHHHHHHH----hcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 5789999888765543 3445678999999999999999998876643221 124578888865432 111111
Q ss_pred HHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcC---------CCceEEEEEecchhhhhhcchhHHHHHHhhhc----
Q 014789 104 EIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECG---------LAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ---- 170 (418)
Q Consensus 104 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~viilDEid~l~~~~~~~L~~l~~~~~---- 170 (418)
.++.... +.........+.... ......+|+|||++.|....|..|..+++...
T Consensus 231 ~llg~~~-------------~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~ 297 (615)
T TIGR02903 231 PLLGSVH-------------DPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFS 297 (615)
T ss_pred HhcCCcc-------------HHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEee
Confidence 1111000 000000000010000 00123499999999998877777766664321
Q ss_pred ---------------------cCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCC
Q 014789 171 ---------------------SVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSS 229 (418)
Q Consensus 171 ---------------------~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~ 229 (418)
....++++|++|+.. .+.+.+.++||| ..+.|+||+.+++.+|++..+.-. +
T Consensus 298 ~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~--~~~l~~aLrSR~--~~i~~~pls~edi~~Il~~~a~~~---~ 370 (615)
T TIGR02903 298 SSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRD--PEEINPALRSRC--AEVFFEPLTPEDIALIVLNAAEKI---N 370 (615)
T ss_pred cceeccCCcccchhhhhhcccCccceEEEEEecccc--ccccCHHHHhce--eEEEeCCCCHHHHHHHHHHHHHHc---C
Confidence 012346777766653 345678899998 468999999999999999986410 0
Q ss_pred CChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcc--------cc-cCCCCChhhHHHHHhcc
Q 014789 230 LPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYM--------DL-ESGFLSFENFKTALSNS 298 (418)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a--------~~-~~~~it~~~v~~a~~~~ 298 (418)
+ .+++ ++..++. ..+.+.|++++.+..+...+ .. ....|+.++|.++++.-
T Consensus 371 v--------------~ls~-eal~~L~---~ys~~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 371 V--------------HLAA-GVEELIA---RYTIEGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred C--------------CCCH-HHHHHHH---HCCCcHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 0 1232 3333333 34567789888876554332 11 23479999999988653
No 131
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.7e-12 Score=125.53 Aligned_cols=198 Identities=15% Similarity=0.195 Sum_probs=127.1
Q ss_pred CCChhhhHHHHHHHHHHHHhc--CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 30 SDSPDSNYSKLKFLVSSSVTE--ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~--~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
=+|-++..+.|.+++.-.--. -.+..++++||||+|||++++.+++.|.+++ .-+.+-|+. +...+-
T Consensus 413 HYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF----fRfSvGG~t--DvAeIk----- 481 (906)
T KOG2004|consen 413 HYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF----FRFSVGGMT--DVAEIK----- 481 (906)
T ss_pred ccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce----EEEeccccc--cHHhhc-----
Confidence 367888888888877543222 2367788999999999999999999998875 222233322 211110
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc----chhHHHHHHhhhccC-----------
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG----KQRLLYSLLDAMQSV----------- 172 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~----~~~~L~~l~~~~~~~----------- 172 (418)
..+-.-...+--.+.+.|+... -...+++|||+|.+... ....|..++|--|+.
T Consensus 482 ---------GHRRTYVGAMPGkiIq~LK~v~--t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~ 550 (906)
T KOG2004|consen 482 ---------GHRRTYVGAMPGKIIQCLKKVK--TENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPV 550 (906)
T ss_pred ---------ccceeeeccCChHHHHHHHhhC--CCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhcccccc
Confidence 0000000111123455565543 23457899999999864 346777777644431
Q ss_pred -CCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc--CCCCCCCChHHHHHHHHHHHHHhCCh
Q 014789 173 -TSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS--LPVDSSLPHAYAVEFNKKIKNILADG 249 (418)
Q Consensus 173 -~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (418)
-+++.||+++|.. +.+.+.++.|+ ..|.++.|..+|-..|.++.|. .-.+.++.++.+ -+++.
T Consensus 551 DLSkVLFicTAN~i---dtIP~pLlDRM--EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v---------~is~~ 616 (906)
T KOG2004|consen 551 DLSKVLFICTANVI---DTIPPPLLDRM--EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQV---------KISDD 616 (906)
T ss_pred chhheEEEEecccc---ccCChhhhhhh--heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhc---------CccHH
Confidence 1689999999984 56778899999 6899999999999999999875 111233332211 23556
Q ss_pred hHHHHHHHHhcccc
Q 014789 250 RFKEIVNTLVNLDS 263 (418)
Q Consensus 250 ~~~~~~~~~~~~~g 263 (418)
++..++...+..+|
T Consensus 617 al~~lI~~YcrEaG 630 (906)
T KOG2004|consen 617 ALLALIERYCREAG 630 (906)
T ss_pred HHHHHHHHHHHHHh
Confidence 67777777776555
No 132
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.2e-12 Score=113.96 Aligned_cols=206 Identities=21% Similarity=0.281 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHhhcCCCC-ccCCCCCChhhhHHHHHHHHHHHH------hcC--CCceEEEECCCCCchHHHHHHHHHHH
Q 014789 7 AAEKASNLLRSRLCDPNF-VVKHLSDSPDSNYSKLKFLVSSSV------TEA--CNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~-~~~~~l~gr~~e~~~l~~~l~~~~------~~~--~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
.-++.+.-|...++...- +-=+.+.|.|...+.|.+.+---+ .++ +.+.+|||||||||||.++++++.+.
T Consensus 111 e~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA 190 (439)
T KOG0739|consen 111 EKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA 190 (439)
T ss_pred hHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc
Confidence 334455566655554321 111357899999988887753322 222 26789999999999999999999876
Q ss_pred hhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc
Q 014789 78 LLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG 157 (418)
Q Consensus 78 ~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~ 157 (418)
...+ ..++.. +++... + +..+.....++++.++. +|.||+|||||.++..
T Consensus 191 nSTF------FSvSSS------DLvSKW---m-----------GESEkLVknLFemARe~----kPSIIFiDEiDslcg~ 240 (439)
T KOG0739|consen 191 NSTF------FSVSSS------DLVSKW---M-----------GESEKLVKNLFEMAREN----KPSIIFIDEIDSLCGS 240 (439)
T ss_pred CCce------EEeehH------HHHHHH---h-----------ccHHHHHHHHHHHHHhc----CCcEEEeehhhhhccC
Confidence 5322 222211 122111 1 12344566677777664 7999999999999875
Q ss_pred ch--------hHHHHHHhhhc---cCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCC
Q 014789 158 KQ--------RLLYSLLDAMQ---SVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPV 226 (418)
Q Consensus 158 ~~--------~~L~~l~~~~~---~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~ 226 (418)
+. .+=-.++-.++ .....+.|.|+||. +-.|+.++++||. ++|++|-+.......+++-.+.-
T Consensus 241 r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNi---Pw~LDsAIRRRFe-kRIYIPLPe~~AR~~MF~lhlG~-- 314 (439)
T KOG0739|consen 241 RSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI---PWVLDSAIRRRFE-KRIYIPLPEAHARARMFKLHLGD-- 314 (439)
T ss_pred CCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCC---chhHHHHHHHHhh-cceeccCCcHHHhhhhheeccCC--
Confidence 11 11111221222 23467889999976 6678999999997 56888877777777777666541
Q ss_pred CCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhcccc
Q 014789 227 DSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDS 263 (418)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 263 (418)
....+.+.++.++.++..+++|
T Consensus 315 ---------------tp~~LT~~d~~eL~~kTeGySG 336 (439)
T KOG0739|consen 315 ---------------TPHVLTEQDFKELARKTEGYSG 336 (439)
T ss_pred ---------------CccccchhhHHHHHhhcCCCCc
Confidence 0112344556666666666665
No 133
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.41 E-value=2.1e-11 Score=111.49 Aligned_cols=228 Identities=14% Similarity=0.096 Sum_probs=133.1
Q ss_pred hhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHH--------
Q 014789 35 SNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIA-------- 106 (418)
Q Consensus 35 ~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~-------- 106 (418)
..++.+.+.+..++.. +.+++|+||||||||++++.+++.+. ..++.++|....+..+++....
T Consensus 5 ~~~~~l~~~~l~~l~~--g~~vLL~G~~GtGKT~lA~~la~~lg------~~~~~i~~~~~~~~~dllg~~~~~~~~~~~ 76 (262)
T TIGR02640 5 DAVKRVTSRALRYLKS--GYPVHLRGPAGTGKTTLAMHVARKRD------RPVMLINGDAELTTSDLVGSYAGYTRKKVH 76 (262)
T ss_pred HHHHHHHHHHHHHHhc--CCeEEEEcCCCCCHHHHHHHHHHHhC------CCEEEEeCCccCCHHHHhhhhcccchhhHH
Confidence 3455566666665554 56899999999999999999998653 3357778877555444443211
Q ss_pred HHHHHhh-hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc-------------C
Q 014789 107 RQLCMEH-QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS-------------V 172 (418)
Q Consensus 107 ~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~-------------~ 172 (418)
.+..... .........|.. ..+..... .+.+++|||++.+....|..|..+++.... .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~--g~l~~A~~------~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~ 148 (262)
T TIGR02640 77 DQFIHNVVKLEDIVRQNWVD--NRLTLAVR------EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDV 148 (262)
T ss_pred HHHHHHhhhhhcccceeecC--chHHHHHH------cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEec
Confidence 1100000 000000000000 00111111 245999999999988788888888754220 1
Q ss_pred CCcEEEEEeccCCChH--HHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChh
Q 014789 173 TSQAVVIGVSCRLDAD--QLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGR 250 (418)
Q Consensus 173 ~~~~~lI~~s~~~~~~--~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (418)
..++.+|+++|+..+. ..+.+.+.+|| ..+.++.++.++..+|+..+.. +++...+..-. +
T Consensus 149 ~~~frvIaTsN~~~~~g~~~l~~aL~~R~--~~i~i~~P~~~~e~~Il~~~~~------~~~~~~~~iv~----~----- 211 (262)
T TIGR02640 149 HPEFRVIFTSNPVEYAGVHETQDALLDRL--ITIFMDYPDIDTETAILRAKTD------VAEDSAATIVR----L----- 211 (262)
T ss_pred CCCCEEEEeeCCccccceecccHHHHhhc--EEEECCCCCHHHHHHHHHHhhC------CCHHHHHHHHH----H-----
Confidence 1367799999985432 24577888998 4678888899999999998853 22222211111 0
Q ss_pred HHHHHH-HHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhcc
Q 014789 251 FKEIVN-TLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNS 298 (418)
Q Consensus 251 ~~~~~~-~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~ 298 (418)
-..++ .-....-.+|.++.+++.+... .....+++++|.+....+
T Consensus 212 -~~~~R~~~~~~~~~~r~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 257 (262)
T TIGR02640 212 -VREFRASGDEITSGLRASLMIAEVATQQ--DIPVDVDDEDFVDLCIDI 257 (262)
T ss_pred -HHHHHhhCCccCCcHHHHHHHHHHHHHc--CCCCCCCcHHHHHHHHHH
Confidence 01111 0001122489999998876555 346788999998765443
No 134
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=4.6e-12 Score=123.82 Aligned_cols=160 Identities=18% Similarity=0.274 Sum_probs=108.5
Q ss_pred CCCChhhhHHHHHHHHHHHHhcC---------CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEA---------CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~---------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
.+.|..+..+.|.+.+.--.+.+ -..++++|||||||||.++.+++.... +.++.+.|...-
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~------~~fisvKGPElL--- 738 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN------LRFISVKGPELL--- 738 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC------eeEEEecCHHHH---
Confidence 46677777776666654322221 256799999999999999999987643 666766653321
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--------chhHHHHHHhhhcc
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--------KQRLLYSLLDAMQS 171 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--------~~~~L~~l~~~~~~ 171 (418)
+..- +..++..+.+++..+.. +|+|+++||||.+.++ ...++.+|+.....
T Consensus 739 -------~KyI----------GaSEq~vR~lF~rA~~a----~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG 797 (952)
T KOG0735|consen 739 -------SKYI----------GASEQNVRDLFERAQSA----KPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDG 797 (952)
T ss_pred -------HHHh----------cccHHHHHHHHHHhhcc----CCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcc
Confidence 1110 12234445555554443 7999999999999986 34677777765543
Q ss_pred CC--CcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHh
Q 014789 172 VT--SQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHIL 222 (418)
Q Consensus 172 ~~--~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l 222 (418)
.. ..+.++++|++ ++.++|++.+ |+. +.+.-++++..+..+|++...
T Consensus 798 ~Egl~GV~i~aaTsR---pdliDpALLRpGRlD-~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 798 AEGLDGVYILAATSR---PDLIDPALLRPGRLD-KLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred ccccceEEEEEecCC---ccccCHhhcCCCccc-eeeeCCCCCcHHHHHHHHHHh
Confidence 22 46888899988 4567788865 665 567778889888888888754
No 135
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.40 E-value=4.1e-12 Score=103.68 Aligned_cols=121 Identities=21% Similarity=0.261 Sum_probs=83.9
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhC--CCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEY--PDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQF 129 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~--~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 129 (418)
....++|+||+|+|||++++.+++.+.... .....+++++|....+...++..++.+++... ....+..+..+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~----~~~~~~~~l~~~ 78 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPL----KSRQTSDELRSL 78 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SS----SSTS-HHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccc----cccCCHHHHHHH
Confidence 456899999999999999999999987531 11377889999887788889999999887653 223466777788
Q ss_pred HHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 130 MIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 130 l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
+.+.+.... ..+|||||+|.+. ....+..|..+.+. .++.+|.++++
T Consensus 79 ~~~~l~~~~----~~~lviDe~~~l~--~~~~l~~l~~l~~~--~~~~vvl~G~~ 125 (131)
T PF13401_consen 79 LIDALDRRR----VVLLVIDEADHLF--SDEFLEFLRSLLNE--SNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHCT----EEEEEEETTHHHH--THHHHHHHHHHTCS--CBEEEEEEESS
T ss_pred HHHHHHhcC----CeEEEEeChHhcC--CHHHHHHHHHHHhC--CCCeEEEEECh
Confidence 888887753 4899999999985 35566666555553 44444444443
No 136
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.40 E-value=2.2e-11 Score=114.20 Aligned_cols=155 Identities=18% Similarity=0.196 Sum_probs=100.5
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh-cccc---cCCChHhH
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-LLFS---KMASFDDN 126 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-~~~~---~~~~~~~~ 126 (418)
.-++.++++||+|+|||++++.+++.+....+... -.|..+. ..+.+...-+++.. ..+. ...+.++
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~----~~Cg~C~----sC~~~~~g~HPD~~~i~~~~~~~~i~id~- 90 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGG----GACGSCK----GCQLLRAGSHPDNFVLEPEEADKTIKVDQ- 90 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCCCH----HHHHHhcCCCCCEEEEeccCCCCCCCHHH-
Confidence 34777889999999999999999999876432100 0222221 12222211111100 0011 1122333
Q ss_pred HHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEe
Q 014789 127 SQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLF 206 (418)
Q Consensus 127 ~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~ 206 (418)
.+.+.+.+......++..|+|||++|.|....++.|...++.+ +.+..+|.+|+. ++.+.|.++||+ +.+.|
T Consensus 91 iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP---p~~~~fiL~t~~---~~~ll~TI~SRc--~~~~~ 162 (328)
T PRK05707 91 VRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEP---SGDTVLLLISHQ---PSRLLPTIKSRC--QQQAC 162 (328)
T ss_pred HHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCC---CCCeEEEEEECC---hhhCcHHHHhhc--eeeeC
Confidence 3335555555444567888899999999887666666666554 367888888877 567889999999 57999
Q ss_pred cCCCHHHHHHHHHHHh
Q 014789 207 LPPSKEDMQRLLEHIL 222 (418)
Q Consensus 207 ~~~~~~e~~~il~~~l 222 (418)
+|++.+++.+.+..+.
T Consensus 163 ~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 163 PLPSNEESLQWLQQAL 178 (328)
T ss_pred CCcCHHHHHHHHHHhc
Confidence 9999999999998764
No 137
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.40 E-value=1.9e-11 Score=117.75 Aligned_cols=238 Identities=13% Similarity=0.079 Sum_probs=144.0
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHH-H
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEI-A 106 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i-~ 106 (418)
..++||++.++.+...+. .+.+++|.||||||||++++.+...+.... .+ .+++|... ++.+++..+ .
T Consensus 20 ~~i~gre~vI~lll~aal------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~--~F--~~~~~~ft-tp~DLfG~l~i 88 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL------SGESVFLLGPPGIAKSLIARRLKFAFQNAR--AF--EYLMTRFS-TPEEVFGPLSI 88 (498)
T ss_pred hhccCcHHHHHHHHHHHc------cCCCEEEECCCChhHHHHHHHHHHHhcccC--cc--eeeeeeec-CcHHhcCcHHH
Confidence 578999999998876642 367899999999999999999998765432 12 23333211 232333221 1
Q ss_pred HHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEE
Q 014789 107 RQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVV 178 (418)
Q Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~l 178 (418)
..+... +.+. .+.... -...-++++||+..+.+..|..|...++..+. .+.+ ++
T Consensus 89 ~~~~~~--------g~f~--------r~~~G~-L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~r-fi 150 (498)
T PRK13531 89 QALKDE--------GRYQ--------RLTSGY-LPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMR-LL 150 (498)
T ss_pred hhhhhc--------Cchh--------hhcCCc-cccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCc-EE
Confidence 111000 0110 000000 00123999999999988777777777744331 1123 44
Q ss_pred EEeccCCChHHHHHHHhhcccCceEEEecCCC-HHHHHHHHHHHhc-----CCCCCCCChHHHHHHHHHHHHHhCChhHH
Q 014789 179 IGVSCRLDADQLLEKRVRSRFSHRKLLFLPPS-KEDMQRLLEHILS-----LPVDSSLPHAYAVEFNKKIKNILADGRFK 252 (418)
Q Consensus 179 I~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~-~~e~~~il~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (418)
+++||+.+-...+.+.+..||. -.+.++|++ .++..+++..... .+....++.+-+..|...+..+.-++.+.
T Consensus 151 v~ATN~LPE~g~~leAL~DRFl-iri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~ 229 (498)
T PRK13531 151 VTASNELPEADSSLEALYDRML-IRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVF 229 (498)
T ss_pred EEECCCCcccCCchHHhHhhEE-EEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHH
Confidence 5555654322245567888884 568888887 5667888876432 11122356666778887777776676776
Q ss_pred HHHHHHhcc---c-----cCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHh
Q 014789 253 EIVNTLVNL---D-----STVNHLLRFLFLAVSYMD-LESGFLSFENFKTALS 296 (418)
Q Consensus 253 ~~~~~~~~~---~-----gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~ 296 (418)
+.+..+... + -++|..+.+++.+-+.|- .|...|+++||. .+.
T Consensus 230 eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~ 281 (498)
T PRK13531 230 ELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLK 281 (498)
T ss_pred HHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhH
Confidence 666665431 1 367888777766544443 488999999998 443
No 138
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.39 E-value=1.1e-11 Score=128.96 Aligned_cols=217 Identities=18% Similarity=0.224 Sum_probs=133.1
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc-----CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE-----ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAF 102 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~-----~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~ 102 (418)
..++|.++.++.|...+...-.+ .+.++++++||+|+|||.+++.+++.+.. .++.+++.........
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~------~~~~~d~se~~~~~~~- 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV------HLERFDMSEYMEKHTV- 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC------CeEEEeCchhhhcccH-
Confidence 56889999999999888764211 12346899999999999999999998843 3467776554432111
Q ss_pred HHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCC
Q 014789 103 KEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTS 174 (418)
Q Consensus 103 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~ 174 (418)
..-++. +++..++++ ...+.+.++. .++.||+|||+|.+.+..++.|+++++.... .-.
T Consensus 527 ---~~lig~-----~~gyvg~~~-~~~l~~~~~~----~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~ 593 (731)
T TIGR02639 527 ---SRLIGA-----PPGYVGFEQ-GGLLTEAVRK----HPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFR 593 (731)
T ss_pred ---HHHhcC-----CCCCcccch-hhHHHHHHHh----CCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCC
Confidence 111111 112222221 1223444443 2578999999999988888888888875321 113
Q ss_pred cEEEEEeccCCC----------------------hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCCh
Q 014789 175 QAVVIGVSCRLD----------------------ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPH 232 (418)
Q Consensus 175 ~~~lI~~s~~~~----------------------~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~ 232 (418)
+.++|++||.-. +...+.|.+..|+. ..+.|.|++.+++.+|+...+.
T Consensus 594 ~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid-~Vi~F~pLs~e~l~~Iv~~~L~--------- 663 (731)
T TIGR02639 594 NVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLD-AIIHFNPLSEEVLEKIVQKFVD--------- 663 (731)
T ss_pred CCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCC-eEEEcCCCCHHHHHHHHHHHHH---------
Confidence 677888887531 01224556677886 5789999999999999998874
Q ss_pred HHHHHHHHH-HHHHhCChhHHHHHHHHhccccCHHHHHHHHHH
Q 014789 233 AYAVEFNKK-IKNILADGRFKEIVNTLVNLDSTVNHLLRFLFL 274 (418)
Q Consensus 233 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~ 274 (418)
.+...++.. +.-.++++++..++.+.+.....+|.+..++..
T Consensus 664 ~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~ 706 (731)
T TIGR02639 664 ELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQE 706 (731)
T ss_pred HHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHH
Confidence 011111110 011234555555555555555566666655544
No 139
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1e-11 Score=121.01 Aligned_cols=313 Identities=15% Similarity=0.164 Sum_probs=174.8
Q ss_pred CCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
.+.|-..++..+...+.-.+.. ..+..+++|||||+|||.++++++++.. .....+||..
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~------a~~~~i~~pe----- 253 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG------AFLFLINGPE----- 253 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC------ceeEecccHH-----
Confidence 4566777777777666554433 3478899999999999999999998765 3346666632
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc----------chhHHHHHHhhh
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG----------KQRLLYSLLDAM 169 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~----------~~~~L~~l~~~~ 169 (418)
+.+.+. +..++.+...++.... ...|.+|+|||+|.++++ .-..|+.|+++.
T Consensus 254 -----li~k~~----------gEte~~LR~~f~~a~k---~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~ 315 (693)
T KOG0730|consen 254 -----LISKFP----------GETESNLRKAFAEALK---FQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGL 315 (693)
T ss_pred -----HHHhcc----------cchHHHHHHHHHHHhc---cCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhC
Confidence 222221 1122222333322222 223999999999999974 113455555654
Q ss_pred ccCCCcEEEEEeccCCChHHHHHHHhhc-ccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCC
Q 014789 170 QSVTSQAVVIGVSCRLDADQLLEKRVRS-RFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILAD 248 (418)
Q Consensus 170 ~~~~~~~~lI~~s~~~~~~~~l~~~v~s-r~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (418)
. ...++++++++|+ ++.+++.+++ ||. +.+.+.-++.++..+|++....... ..++
T Consensus 316 ~-~~~~vivl~atnr---p~sld~alRRgRfd-~ev~IgiP~~~~RldIl~~l~k~~~------------------~~~~ 372 (693)
T KOG0730|consen 316 K-PDAKVIVLAATNR---PDSLDPALRRGRFD-REVEIGIPGSDGRLDILRVLTKKMN------------------LLSD 372 (693)
T ss_pred c-CcCcEEEEEecCC---ccccChhhhcCCCc-ceeeecCCCchhHHHHHHHHHHhcC------------------Ccch
Confidence 4 3478999999998 5577888875 886 5688888888888888877654110 1112
Q ss_pred hhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHHhhhhhh-
Q 014789 249 GRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCLKRLEVK- 327 (418)
Q Consensus 249 ~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~~~l~~~- 327 (418)
..+..+.....++.| ..+-.+|+.|..-+... +.++++.|...+.+....+.+-..+.-..--+..+-.+...
T Consensus 373 ~~l~~iA~~thGyvG--aDL~~l~~ea~~~~~r~----~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~el 446 (693)
T KOG0730|consen 373 VDLEDIAVSTHGYVG--ADLAALCREASLQATRR----TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKREL 446 (693)
T ss_pred hhHHHHHHHccchhH--HHHHHHHHHHHHHHhhh----hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHH
Confidence 233344443333222 12333444433221111 77788888877776655554433333222111111111111
Q ss_pred ---cCCcccHHHHHHHHHHHHhhcCC----CCccChhHHHHHHHHHHhCCcceeecCCCCccccccccEEEecCHHHHHH
Q 014789 328 ---EQNSYNFNSVMKEYKSIHDSFQT----SDYYSRNVCLRAFEHLLQRELICFTDNRGYSQSVEFRPVKLLISSIELHQ 400 (418)
Q Consensus 328 ---~~~~~~~~~v~~~y~~~~~~~~~----~~~~~~~~~~~~~~~L~~~~~i~~~~~~g~~~~~~~~~~~l~~~~~~v~~ 400 (418)
=.-+....+.|..|-. ..--|+ +|.+++..+.+++..-..+.++.+ +| .+...-...-+...|.+
T Consensus 447 q~~V~~p~~~pe~F~r~Gi-~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv---kg----pEL~sk~vGeSEr~ir~ 518 (693)
T KOG0730|consen 447 QQAVEWPLKHPEKFARFGI-SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV---KG----PELFSKYVGESERAIRE 518 (693)
T ss_pred HHHHhhhhhchHHHHHhcC-CCCceEEEECCCCcchHHHHHHHhhhhcCCeeec---cC----HHHHHHhcCchHHHHHH
Confidence 0123334455444430 000011 577888888888888888888775 11 12222222334555666
Q ss_pred HHhhCCC
Q 014789 401 GLKSYCS 407 (418)
Q Consensus 401 ~~~~~~~ 407 (418)
.+++...
T Consensus 519 iF~kAR~ 525 (693)
T KOG0730|consen 519 VFRKARQ 525 (693)
T ss_pred HHHHHhh
Confidence 6655533
No 140
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.38 E-value=7e-12 Score=129.06 Aligned_cols=175 Identities=16% Similarity=0.215 Sum_probs=116.5
Q ss_pred CCCCChhhhHHHHHHHHHHHHh-----cCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVT-----EACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAF 102 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~-----~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~ 102 (418)
..++|.++.++.|...+..... +.+..+++++||||||||.+++.+++.+.. .++.++|........
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~------~~i~id~se~~~~~~-- 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI------ELLRFDMSEYMERHT-- 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC------CcEEeechhhccccc--
Confidence 4678999999999999886532 122357999999999999999999998842 347778766543221
Q ss_pred HHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCC
Q 014789 103 KEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTS 174 (418)
Q Consensus 103 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~ 174 (418)
...+-+. +++..++.+ ...+.+.+.. .++.||+|||+|.+.+..++.|+++++.... .-.
T Consensus 530 ---~~~LiG~----~~gyvg~~~-~g~L~~~v~~----~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~r 597 (758)
T PRK11034 530 ---VSRLIGA----PPGYVGFDQ-GGLLTDAVIK----HPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_pred ---HHHHcCC----CCCcccccc-cchHHHHHHh----CCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCC
Confidence 1222111 111111111 1123333433 2468999999999988888888888874321 114
Q ss_pred cEEEEEeccCC---------C-------------hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 175 QAVVIGVSCRL---------D-------------ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 175 ~~~lI~~s~~~---------~-------------~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
++++|++||.- . +...+.|.+..|+. ..|.|.|++.+++.+|+...+.
T Consensus 598 n~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid-~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLD-NIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred CcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCC-EEEEcCCCCHHHHHHHHHHHHH
Confidence 67899999832 0 11234567777885 5789999999999999987764
No 141
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.2e-11 Score=116.88 Aligned_cols=237 Identities=16% Similarity=0.211 Sum_probs=137.3
Q ss_pred CCCChhhhHHHHHHHHHHHH------hc--CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSV------TE--ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCC 100 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~------~~--~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~ 100 (418)
.++|.+..-..+.+.+--.+ .+ .....+++.||||+|||.++++++.+.... +..+.+...++.+
T Consensus 154 di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~at------ff~iSassLtsK~- 226 (428)
T KOG0740|consen 154 DIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGAT------FFNISASSLTSKY- 226 (428)
T ss_pred CCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcce------EeeccHHHhhhhc-
Confidence 46665555554444322111 11 236789999999999999999999886532 3444443333220
Q ss_pred HHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc------------hhHHHHHHhh
Q 014789 101 AFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK------------QRLLYSLLDA 168 (418)
Q Consensus 101 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~------------~~~L~~l~~~ 168 (418)
. +..+.....++...+. ..|.|++|||+|.+...+ -+.|.++.-.
T Consensus 227 -~------------------Ge~eK~vralf~vAr~----~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~ 283 (428)
T KOG0740|consen 227 -V------------------GESEKLVRALFKVARS----LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGK 283 (428)
T ss_pred -c------------------ChHHHHHHHHHHHHHh----cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccc
Confidence 0 0112333444444443 369999999999998741 1233333222
Q ss_pred hccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCC
Q 014789 169 MQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILAD 248 (418)
Q Consensus 169 ~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (418)
......++.+||+||. +..++..++.||. +++.++.++.+....++++.|.-. ...+.+.-......... -++.
T Consensus 284 ~s~~~drvlvigaTN~---P~e~Dea~~Rrf~-kr~yiplPd~etr~~~~~~ll~~~-~~~l~~~d~~~l~~~Te-gysg 357 (428)
T KOG0740|consen 284 NSAPDDRVLVIGATNR---PWELDEAARRRFV-KRLYIPLPDYETRSLLWKQLLKEQ-PNGLSDLDISLLAKVTE-GYSG 357 (428)
T ss_pred cCCCCCeEEEEecCCC---chHHHHHHHHHhh-ceeeecCCCHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhc-Cccc
Confidence 2334568999999998 6778899999997 567799999999999999988622 12222211112222111 2333
Q ss_pred hhHHHHHHHHhccccCHHHHHHHHHHHhhcc-cccCCCCChhhHHHHHhccCCCchhh
Q 014789 249 GRFKEIVNTLVNLDSTVNHLLRFLFLAVSYM-DLESGFLSFENFKTALSNSHRQPKLE 305 (418)
Q Consensus 249 ~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a-~~~~~~it~~~v~~a~~~~~~~~~~~ 305 (418)
.++..+++..+ .|..|....... ++.. ..+...++..++..|.+.+.+.....
T Consensus 358 sdi~~l~kea~--~~p~r~~~~~~~--~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~ 411 (428)
T KOG0740|consen 358 SDITALCKEAA--MGPLRELGGTTD--LEFIDADKIRPITYPDFKNAFKNIKPSVSLE 411 (428)
T ss_pred ccHHHHHHHhh--cCchhhcccchh--hhhcchhccCCCCcchHHHHHHhhccccCcc
Confidence 34555555442 244443333211 1111 12556788899999988877655433
No 142
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=6.2e-11 Score=106.09 Aligned_cols=148 Identities=18% Similarity=0.277 Sum_probs=100.7
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhC---CCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEY---PDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQF 129 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~---~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 129 (418)
.+-++++||||||||++++++++.+.-+. ...-..+.+||.. ++.+.++.-+ .-....++.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshs------LFSKWFsESg----------KlV~kmF~k 240 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHS------LFSKWFSESG----------KLVAKMFQK 240 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhH------HHHHHHhhhh----------hHHHHHHHH
Confidence 45688999999999999999999987432 1124567777633 3333333221 223455666
Q ss_pred HHHHHhhcCCCceEEEEEecchhhhhhc------------chhHHHHHHhhhcc--CCCcEEEEEeccCCChHHHHHHHh
Q 014789 130 MIEMLRECGLAHKTIIFVLDEFDLFAQG------------KQRLLYSLLDAMQS--VTSQAVVIGVSCRLDADQLLEKRV 195 (418)
Q Consensus 130 l~~~l~~~~~~~~~~viilDEid~l~~~------------~~~~L~~l~~~~~~--~~~~~~lI~~s~~~~~~~~l~~~v 195 (418)
|.+++.. .+.-+.++|||++.+... .-.++..++..... ...++.+.+++|- .+.++.+.
T Consensus 241 I~ELv~d---~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl---~~siD~Af 314 (423)
T KOG0744|consen 241 IQELVED---RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNL---TDSIDVAF 314 (423)
T ss_pred HHHHHhC---CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccch---HHHHHHHh
Confidence 7777765 357888999999988753 12455555543332 2246666666654 67888999
Q ss_pred hcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 196 RSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 196 ~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
-+|-.. .....|++...+.+|++..++
T Consensus 315 VDRADi-~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 315 VDRADI-VFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred hhHhhh-eeecCCccHHHHHHHHHHHHH
Confidence 999863 467899999999999999875
No 143
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.36 E-value=9e-12 Score=130.68 Aligned_cols=220 Identities=14% Similarity=0.163 Sum_probs=137.6
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc---C-CC-ceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE---A-CN-NSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAF 102 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~---~-~~-~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~ 102 (418)
..++|.+..++.+.+.+..+..+ + .+ +.+++.||+|+|||.+++.+++.+.... -.++.+++.........
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~---~~~~~~dmse~~~~~~~- 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGE---QNLITINMSEFQEAHTV- 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCC---cceEEEeHHHhhhhhhh-
Confidence 46789999999999998775322 1 22 3589999999999999999999885432 34577776554432111
Q ss_pred HHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccC--------CC
Q 014789 103 KEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSV--------TS 174 (418)
Q Consensus 103 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~--------~~ 174 (418)
..+-+ .+++..++.+ -..+.+.++. .++.||+|||++.+.+..++.|+++++..... -.
T Consensus 642 ----~~l~g----~~~gyvg~~~-~g~L~~~v~~----~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~ 708 (852)
T TIGR03345 642 ----SRLKG----SPPGYVGYGE-GGVLTEAVRR----KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFK 708 (852)
T ss_pred ----ccccC----CCCCcccccc-cchHHHHHHh----CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEecc
Confidence 11111 1222222221 1123344443 36789999999999887778888888654321 14
Q ss_pred cEEEEEeccCCC--------------------------hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCC
Q 014789 175 QAVVIGVSCRLD--------------------------ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDS 228 (418)
Q Consensus 175 ~~~lI~~s~~~~--------------------------~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~ 228 (418)
+.++|.+||... +...+.|.+.+|+ ..|.|.|++.+++.+|+...+.
T Consensus 709 n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi--~iI~F~pLs~e~l~~Iv~~~L~----- 781 (852)
T TIGR03345 709 NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRM--TVIPYLPLDDDVLAAIVRLKLD----- 781 (852)
T ss_pred ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcce--eEEEeCCCCHHHHHHHHHHHHH-----
Confidence 678888888411 0112445666777 4789999999999999998874
Q ss_pred CCChHHHHHHHHH--HHHHhCChhHHHHHHHHhccccCHHHHHHHHHHH
Q 014789 229 SLPHAYAVEFNKK--IKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLA 275 (418)
Q Consensus 229 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a 275 (418)
.....+... +.-.++++++..++...++...++|.+.+++..-
T Consensus 782 ----~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~ 826 (852)
T TIGR03345 782 ----RIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQT 826 (852)
T ss_pred ----HHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHH
Confidence 111111111 1112456656666666555555788887777653
No 144
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.36 E-value=2.3e-11 Score=128.47 Aligned_cols=222 Identities=15% Similarity=0.165 Sum_probs=140.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc-----CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE-----ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAF 102 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~-----~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~ 102 (418)
..++|.+..++.+...+.....+ .+..+++|+||+|+|||++++.+++.+.... ..+++++|.........
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~---~~~i~~d~s~~~~~~~~- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDE---DAMVRIDMSEYMEKHSV- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCC---CcEEEEechhhcccchH-
Confidence 46899999999999999876432 1245788999999999999999999876433 45678888765442211
Q ss_pred HHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCC
Q 014789 103 KEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTS 174 (418)
Q Consensus 103 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~ 174 (418)
..+... +++..++++. ..+.+.++. .+..||+|||++.+.+..++.|+++++.... .-.
T Consensus 641 ----~~l~g~----~~g~~g~~~~-g~l~~~v~~----~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~r 707 (852)
T TIGR03346 641 ----ARLIGA----PPGYVGYEEG-GQLTEAVRR----KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFR 707 (852)
T ss_pred ----HHhcCC----CCCccCcccc-cHHHHHHHc----CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecC
Confidence 111111 1222222221 123333333 2457999999999988888888888865431 124
Q ss_pred cEEEEEeccCCC----------------------hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCCh
Q 014789 175 QAVVIGVSCRLD----------------------ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPH 232 (418)
Q Consensus 175 ~~~lI~~s~~~~----------------------~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~ 232 (418)
+.++|++||.-. ....+.|.+..|+. ..+.|.|++.+++.+|+...+.
T Consensus 708 n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid-~IivF~PL~~e~l~~I~~l~L~--------- 777 (852)
T TIGR03346 708 NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRID-EIVVFHPLGREQIARIVEIQLG--------- 777 (852)
T ss_pred CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcC-eEEecCCcCHHHHHHHHHHHHH---------
Confidence 567888888621 01122345556665 5789999999999999988764
Q ss_pred HHHHHHHHH-HHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHh
Q 014789 233 AYAVEFNKK-IKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAV 276 (418)
Q Consensus 233 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~ 276 (418)
.....+... +.-.++++++..++.+-+...+++|.+.+++.+.+
T Consensus 778 ~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 778 RLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 011111110 01124566666666665666788888888877655
No 145
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.36 E-value=1.1e-11 Score=102.83 Aligned_cols=148 Identities=18% Similarity=0.238 Sum_probs=88.4
Q ss_pred CChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHH
Q 014789 31 DSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLC 110 (418)
Q Consensus 31 ~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~ 110 (418)
+|++.+++.+...+ ....+.+++|+||||+|||++++.+++.+.... ..++++++............+...
T Consensus 1 ~~~~~~~~~i~~~~----~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~-- 71 (151)
T cd00009 1 VGQEEAIEALREAL----ELPPPKNLLLYGPPGTGKTTLARAIANELFRPG---APFLYLNASDLLEGLVVAELFGHF-- 71 (151)
T ss_pred CchHHHHHHHHHHH----hCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCC---CCeEEEehhhhhhhhHHHHHhhhh--
Confidence 36677777776665 334577899999999999999999999886332 456777765543321111100000
Q ss_pred HhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccC---CCcEEEEEeccCCCh
Q 014789 111 MEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSV---TSQAVVIGVSCRLDA 187 (418)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~---~~~~~lI~~s~~~~~ 187 (418)
......... ....+.++++||++.+.......+..++...... ..++.+|++++....
T Consensus 72 ----------------~~~~~~~~~---~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 72 ----------------LVRLLFELA---EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred ----------------hHhHHHHhh---ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc
Confidence 000001111 1235789999999998444334444444433221 357888888887542
Q ss_pred HHHHHHHhhcccCceEEEecC
Q 014789 188 DQLLEKRVRSRFSHRKLLFLP 208 (418)
Q Consensus 188 ~~~l~~~v~sr~~~~~i~~~~ 208 (418)
..+.+.+.+|+. ..+.++|
T Consensus 133 -~~~~~~~~~r~~-~~i~~~~ 151 (151)
T cd00009 133 -GDLDRALYDRLD-IRIVIPL 151 (151)
T ss_pred -CCcChhHHhhhc-cEeecCC
Confidence 345667788886 4566654
No 146
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1e-11 Score=122.29 Aligned_cols=215 Identities=17% Similarity=0.268 Sum_probs=133.1
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcC---------CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEA---------CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~---------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
....|.++..+++.+.+... +++ -|..++++||||||||.++++++.+.. +.+..+++..+-.
T Consensus 150 ~DVAG~dEakeel~EiVdfL-k~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~------VPFf~iSGS~FVe- 221 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFL-KNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG------VPFFSISGSDFVE- 221 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHH-hCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccC------CCceeccchhhhh-
Confidence 56789998887777776554 332 278899999999999999999987654 3335555533221
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc-----------hhHHHHHHh
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK-----------QRLLYSLLD 167 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~-----------~~~L~~l~~ 167 (418)
+.-. .+.+. ..+++.+. ++..|+||+|||+|.....+ ...|.+|+-
T Consensus 222 ------mfVG------------vGAsR----VRdLF~qA-kk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLv 278 (596)
T COG0465 222 ------MFVG------------VGASR----VRDLFEQA-KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLV 278 (596)
T ss_pred ------hhcC------------CCcHH----HHHHHHHh-hccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHh
Confidence 1100 11111 22223222 23468999999999988752 246667665
Q ss_pred hhccC--CCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHH
Q 014789 168 AMQSV--TSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS-LPVDSSLPHAYAVEFNKKI 242 (418)
Q Consensus 168 ~~~~~--~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~-~~~~~~~~~~~~~~~~~~~ 242 (418)
.+... +..+++++.||+. +.+++++.+ ||. ++|..+.++.....+|++-.+. .+.+.
T Consensus 279 EmDGF~~~~gviviaaTNRp---dVlD~ALlRpgRFD-RqI~V~~PDi~gRe~IlkvH~~~~~l~~-------------- 340 (596)
T COG0465 279 EMDGFGGNEGVIVIAATNRP---DVLDPALLRPGRFD-RQILVELPDIKGREQILKVHAKNKPLAE-------------- 340 (596)
T ss_pred hhccCCCCCceEEEecCCCc---ccchHhhcCCCCcc-eeeecCCcchhhHHHHHHHHhhcCCCCC--------------
Confidence 55443 3589999999995 456777764 676 7899999999999999996654 11111
Q ss_pred HHHhCChhHHHHHHHHhcccc-CHHHHHHHHHHH-hhcccccCCCCChhhHHHHHhccC
Q 014789 243 KNILADGRFKEIVNTLVNLDS-TVNHLLRFLFLA-VSYMDLESGFLSFENFKTALSNSH 299 (418)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~g-d~r~~~~~l~~a-~~~a~~~~~~it~~~v~~a~~~~~ 299 (418)
+-.+..+++...+.+| |.- +++-.| +--+..+...|+..|+.+|..++.
T Consensus 341 -----~Vdl~~iAr~tpGfsGAdL~---nl~NEAal~aar~n~~~i~~~~i~ea~drv~ 391 (596)
T COG0465 341 -----DVDLKKIARGTPGFSGADLA---NLLNEAALLAARRNKKEITMRDIEEAIDRVI 391 (596)
T ss_pred -----cCCHHHHhhhCCCcccchHh---hhHHHHHHHHHHhcCeeEeccchHHHHHHHh
Confidence 1112233343333333 222 222222 222334777888889888887663
No 147
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=1.2e-10 Score=108.65 Aligned_cols=180 Identities=12% Similarity=0.128 Sum_probs=112.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCC------------CeEEEEEccccC
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPD------------TISVIKLNGLLH 95 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~------------~~~~v~in~~~~ 95 (418)
+.++|.+...+.+...+.. +.-++..+++||+|+||++++..+++.+....+. .+.+.++.....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~---~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~ 80 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQ---NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQ 80 (314)
T ss_pred HHhCCHHHHHHHHHHHHHh---CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccc
Confidence 3578998888877776533 2337899999999999999999999988654210 011111111000
Q ss_pred CChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCc
Q 014789 96 SDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQ 175 (418)
Q Consensus 96 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~ 175 (418)
......-..-+...+... ........ +..+.+.+.+......+...|+|||++|.|....++.|..+++.+. +
T Consensus 81 ~~g~~~~~~~~~~~~~~~--~~~~~I~i-d~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp----~ 153 (314)
T PRK07399 81 HQGKLITASEAEEAGLKR--KAPPQIRL-EQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG----N 153 (314)
T ss_pred ccccccchhhhhhccccc--cccccCcH-HHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC----C
Confidence 000000000000000000 00001112 2334556666655556788999999999998776677777666643 3
Q ss_pred EEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHh
Q 014789 176 AVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHIL 222 (418)
Q Consensus 176 ~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l 222 (418)
..+|.+++. ++.+.+.++||+ +.+.|+|++.+++.++|....
T Consensus 154 ~~fILi~~~---~~~Ll~TI~SRc--q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 154 GTLILIAPS---PESLLPTIVSRC--QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred CeEEEEECC---hHhCcHHHHhhc--eEEecCCCCHHHHHHHHHHhh
Confidence 457777765 578999999999 679999999999999999864
No 148
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.4e-11 Score=115.23 Aligned_cols=177 Identities=20% Similarity=0.328 Sum_probs=110.0
Q ss_pred HHHhhcCCCCccCC-CCCChhhhHHHHHHHHHHHHhcC-------------CCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 15 LRSRLCDPNFVVKH-LSDSPDSNYSKLKFLVSSSVTEA-------------CNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 15 ~~~~~~~~~~~~~~-~l~gr~~e~~~l~~~l~~~~~~~-------------~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
....+.+|+|-+.+ -+-|.++|+..+.+ ++..+. .-..++||||||||||.+++.+.+-|..+
T Consensus 207 ~~n~ii~Pdf~Fe~mGIGGLd~EFs~IFR---RAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAr 283 (744)
T KOG0741|consen 207 ASNSIINPDFNFESMGIGGLDKEFSDIFR---RAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAR 283 (744)
T ss_pred hhccccCCCCChhhcccccchHHHHHHHH---HHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCC
Confidence 34457778875521 25678999887743 222221 24569999999999999999999998876
Q ss_pred CCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHH----HHhhcCCCceEEEEEecchhhhhh
Q 014789 81 YPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIE----MLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 81 ~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~----~l~~~~~~~~~~viilDEid~l~~ 156 (418)
-|. + +||... ++... +..+++.+.++. --+.....+.-.|||+||+|.++.
T Consensus 284 ePK---I--VNGPeI----------L~KYV----------GeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICK 338 (744)
T KOG0741|consen 284 EPK---I--VNGPEI----------LNKYV----------GESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICK 338 (744)
T ss_pred CCc---c--cCcHHH----------HHHhh----------cccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHH
Confidence 532 2 355332 11111 111223333322 222233456789999999999997
Q ss_pred c----------chhHHHHHHhhhccC--CCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCC---HHHHHHHHH
Q 014789 157 G----------KQRLLYSLLDAMQSV--TSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPS---KEDMQRLLE 219 (418)
Q Consensus 157 ~----------~~~~L~~l~~~~~~~--~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~---~~e~~~il~ 219 (418)
. ...++.+|+.-+... -.++.|||+||+. +.++.++.+ ||. .++...-++ .-|+.+|-.
T Consensus 339 qRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~---DlIDEALLRPGRlE-VqmEIsLPDE~gRlQIl~IHT 414 (744)
T KOG0741|consen 339 QRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRK---DLIDEALLRPGRLE-VQMEISLPDEKGRLQILKIHT 414 (744)
T ss_pred hcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCch---hhHHHHhcCCCceE-EEEEEeCCCccCceEEEEhhh
Confidence 4 346888887554432 2589999999995 456667665 553 233344444 446777777
Q ss_pred HHhc
Q 014789 220 HILS 223 (418)
Q Consensus 220 ~~l~ 223 (418)
.|+.
T Consensus 415 ~rMr 418 (744)
T KOG0741|consen 415 KRMR 418 (744)
T ss_pred hhhh
Confidence 8875
No 149
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=5.6e-11 Score=112.17 Aligned_cols=172 Identities=14% Similarity=0.177 Sum_probs=103.0
Q ss_pred CCCC-hhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHH
Q 014789 29 LSDS-PDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIA 106 (418)
Q Consensus 29 ~l~g-r~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~ 106 (418)
.++| .+..++.+... +..+. ++.++++||+|+|||++++.+++.+....+.... .|..+. ..+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~----~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~----~cg~C~----~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNS----IAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE----PCGTCT----NCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHH----HHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC----CCCcCH----HHHHHh
Confidence 3455 55555555554 44444 6667899999999999999999988654311000 121111 011111
Q ss_pred HHHHHhhhc-ccc-cCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 107 RQLCMEHQL-LFS-KMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 107 ~~l~~~~~~-~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
..-..+... .+. ...+.++ ...+.+.+......+..-|+||||+|.+....++.|...++. .+..+.+|++++.
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~-ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE---Pp~~~~~Il~t~~ 149 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQ-IRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE---PSGGTTAILLTEN 149 (329)
T ss_pred cCCCCCEEEeccccccCCHHH-HHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC---CCCCceEEEEeCC
Confidence 100000000 000 0111222 222333333333345678999999999987666666655554 4467788888875
Q ss_pred CChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHH
Q 014789 185 LDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHI 221 (418)
Q Consensus 185 ~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~ 221 (418)
...+.+.++||+ ..+.|.|++.+++.++++..
T Consensus 150 ---~~~ll~TIrSRc--~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 150 ---KHQILPTILSRC--QVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred ---hHhCcHHHHhhc--eeeeCCCCCHHHHHHHHHHc
Confidence 568889999999 67999999999998888764
No 150
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=7.7e-11 Score=110.86 Aligned_cols=155 Identities=10% Similarity=0.157 Sum_probs=103.9
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCC--CCeEEEEEcc---ccCCChHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYP--DTISVIKLNG---LLHSDDCCAF 102 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~--~~~~~v~in~---~~~~~~~~~~ 102 (418)
.++|.+...+.+...+ ..+. ++..+++||+|+|||++++.+++.+....+ ..+.+..+.. .... ..-+
T Consensus 5 ~i~g~~~~~~~l~~~~----~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~--v~~i 78 (313)
T PRK05564 5 TIIGHENIKNRIKNSI----IKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIG--VDDI 78 (313)
T ss_pred hccCcHHHHHHHHHHH----HcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCC--HHHH
Confidence 5778877777766665 4444 566689999999999999999998754321 1112222222 1111 1123
Q ss_pred HHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEec
Q 014789 103 KEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVS 182 (418)
Q Consensus 103 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s 182 (418)
+++...+ ......+...|+|||++|.+....++.|...++. ++....+|.++
T Consensus 79 r~~~~~~-------------------------~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEe---pp~~t~~il~~ 130 (313)
T PRK05564 79 RNIIEEV-------------------------NKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEE---PPKGVFIILLC 130 (313)
T ss_pred HHHHHHH-------------------------hcCcccCCceEEEEechhhcCHHHHHHHHHHhcC---CCCCeEEEEEe
Confidence 3333322 2222234678999999999987666666665554 34667777777
Q ss_pred cCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHh
Q 014789 183 CRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHIL 222 (418)
Q Consensus 183 ~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l 222 (418)
+. ++.+.+.++||+ +.+.|.|++.+++...+..+.
T Consensus 131 ~~---~~~ll~TI~SRc--~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 131 EN---LEQILDTIKSRC--QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred CC---hHhCcHHHHhhc--eeeeCCCcCHHHHHHHHHHHh
Confidence 55 568889999999 679999999999999988765
No 151
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2e-11 Score=106.38 Aligned_cols=213 Identities=18% Similarity=0.206 Sum_probs=128.5
Q ss_pred CCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
.+-|.-+|++.+.+.++--+-+ .++..+++|||||||||.+++++++.-. .+++++-++..
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd------acfirvigsel---- 247 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD------ACFIRVIGSEL---- 247 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC------ceEEeehhHHH----
Confidence 3567888999998887654333 2477899999999999999999987532 45566544221
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----------chhHHHHHHhh
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----------KQRLLYSLLDA 168 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----------~~~~L~~l~~~ 168 (418)
......+ -......++++.+. .+.++|++||+|.+... .|..+..|+..
T Consensus 248 ------vqkyvge----------garmvrelf~mart----kkaciiffdeidaiggarfddg~ggdnevqrtmleli~q 307 (435)
T KOG0729|consen 248 ------VQKYVGE----------GARMVRELFEMART----KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQ 307 (435)
T ss_pred ------HHHHhhh----------hHHHHHHHHHHhcc----cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHh
Confidence 1111111 12334445555543 36899999999988763 13333333333
Q ss_pred hcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH
Q 014789 169 MQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKN 244 (418)
Q Consensus 169 ~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 244 (418)
... ...++-+..+||+. +.|+|++.+ |+. +.+.|.-++.+-...|++-.... +
T Consensus 308 ldgfdprgnikvlmatnrp---dtldpallrpgrld-rkvef~lpdlegrt~i~kihaks-----m-------------- 364 (435)
T KOG0729|consen 308 LDGFDPRGNIKVLMATNRP---DTLDPALLRPGRLD-RKVEFGLPDLEGRTHIFKIHAKS-----M-------------- 364 (435)
T ss_pred ccCCCCCCCeEEEeecCCC---CCcCHhhcCCcccc-cceeccCCcccccceeEEEeccc-----c--------------
Confidence 222 35789999999994 567787765 554 67888888766555554433220 0
Q ss_pred HhCChhH-HHHHHHHhc-ccc-CHHHHHHHHHHHhhcccc-cCCCCChhhHHHHHhcc
Q 014789 245 ILADGRF-KEIVNTLVN-LDS-TVNHLLRFLFLAVSYMDL-ESGFLSFENFKTALSNS 298 (418)
Q Consensus 245 ~~~~~~~-~~~~~~~~~-~~g-d~r~~~~~l~~a~~~a~~-~~~~it~~~v~~a~~~~ 298 (418)
. -+..+ -+++.+++. .+| ++| .+|..|+-.|-. .....|..+|.+|++.+
T Consensus 365 s-verdir~ellarlcpnstgaeir---svcteagmfairarrk~atekdfl~av~kv 418 (435)
T KOG0729|consen 365 S-VERDIRFELLARLCPNSTGAEIR---SVCTEAGMFAIRARRKVATEKDFLDAVNKV 418 (435)
T ss_pred c-cccchhHHHHHhhCCCCcchHHH---HHHHHhhHHHHHHHhhhhhHHHHHHHHHHH
Confidence 0 01112 234555543 233 444 566666655432 34467888888887765
No 152
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.3e-11 Score=122.96 Aligned_cols=210 Identities=16% Similarity=0.207 Sum_probs=135.2
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhC-CC---CeEEEEEccccCCChHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEY-PD---TISVIKLNGLLHSDDCCAFKE 104 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~-~~---~~~~v~in~~~~~~~~~~~~~ 104 (418)
.++||++|++.+.+.|.+ ...+|-++.|+||+|||+++.-++..+.... |. +..++.++- ..
T Consensus 171 PvIGRd~EI~r~iqIL~R----R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~----------g~ 236 (786)
T COG0542 171 PVIGRDEEIRRTIQILSR----RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL----------GS 236 (786)
T ss_pred CCcChHHHHHHHHHHHhc----cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH----------HH
Confidence 389999999999998754 3567788999999999999999999876543 22 122222221 11
Q ss_pred HHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcch-----hHHHHHHhhhccCCCcEEEE
Q 014789 105 IARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQ-----RLLYSLLDAMQSVTSQAVVI 179 (418)
Q Consensus 105 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~-----~~L~~l~~~~~~~~~~~~lI 179 (418)
+.... + --+.|++-++.+.+-+++ .+ ++|+||||+|.+...+. --..+++. |......+-+|
T Consensus 237 LvAGa--k------yRGeFEeRlk~vl~ev~~---~~-~vILFIDEiHtiVGAG~~~G~a~DAaNiLK-PaLARGeL~~I 303 (786)
T COG0542 237 LVAGA--K------YRGEFEERLKAVLKEVEK---SK-NVILFIDEIHTIVGAGATEGGAMDAANLLK-PALARGELRCI 303 (786)
T ss_pred Hhccc--c------ccCcHHHHHHHHHHHHhc---CC-CeEEEEechhhhcCCCcccccccchhhhhH-HHHhcCCeEEE
Confidence 11000 0 013455555555554443 33 89999999999998732 11333332 23345789999
Q ss_pred EeccCCChHHHH--HHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHH
Q 014789 180 GVSCRLDADQLL--EKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNT 257 (418)
Q Consensus 180 ~~s~~~~~~~~l--~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (418)
|+|+-.++..++ ++++.+|| +.|.+..++.++...||+..-. .|..+..-.+.++++..++.-
T Consensus 304 GATT~~EYRk~iEKD~AL~RRF--Q~V~V~EPs~e~ti~ILrGlk~-------------~yE~hH~V~i~D~Al~aAv~L 368 (786)
T COG0542 304 GATTLDEYRKYIEKDAALERRF--QKVLVDEPSVEDTIAILRGLKE-------------RYEAHHGVRITDEALVAAVTL 368 (786)
T ss_pred EeccHHHHHHHhhhchHHHhcC--ceeeCCCCCHHHHHHHHHHHHH-------------HHHHccCceecHHHHHHHHHH
Confidence 999988877666 56888999 5689999999999999887532 333332223455555554443
Q ss_pred Hhcc---ccCHHHHHHHHHHHhhccc
Q 014789 258 LVNL---DSTVNHLLRFLFLAVSYMD 280 (418)
Q Consensus 258 ~~~~---~gd~r~~~~~l~~a~~~a~ 280 (418)
...+ .-=+.++++++..|++...
T Consensus 369 S~RYI~dR~LPDKAIDLiDeA~a~~~ 394 (786)
T COG0542 369 SDRYIPDRFLPDKAIDLLDEAGARVR 394 (786)
T ss_pred HHhhcccCCCCchHHHHHHHHHHHHH
Confidence 3332 2245568888888876654
No 153
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=8.4e-11 Score=108.32 Aligned_cols=135 Identities=21% Similarity=0.298 Sum_probs=91.2
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC-hHHHHHHHHHHHHHhhhcccccCCChHhHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD-DCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 131 (418)
.++|++|||||||||..++.++..-.-. +....|-.... -.+.+.. ...++
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr~SGlD------YA~mTGGDVAPlG~qaVTk----------------------iH~lF 435 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELARHSGLD------YAIMTGGDVAPLGAQAVTK----------------------IHKLF 435 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHhhcCCc------eehhcCCCccccchHHHHH----------------------HHHHH
Confidence 6789999999999999999988764322 22222221110 0111111 12233
Q ss_pred HHHhhcCCCceEEEEEecchhhhhhc---------chhHHHHHH-hhhccCCCcEEEEEeccCCChHHHHHHHhhcccCc
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQG---------KQRLLYSLL-DAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSH 201 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~~---------~~~~L~~l~-~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~ 201 (418)
+.-+. .++.++++|||+|.|.-. ....|..|+ +..+ ....++++.+||. +..|+..|.+|+.
T Consensus 436 DWakk---S~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd-qSrdivLvlAtNr---pgdlDsAV~DRid- 507 (630)
T KOG0742|consen 436 DWAKK---SRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-QSRDIVLVLATNR---PGDLDSAVNDRID- 507 (630)
T ss_pred HHHhh---cccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc-cccceEEEeccCC---ccchhHHHHhhhh-
Confidence 33333 358999999999988764 224555543 3333 3367889999998 6678889999997
Q ss_pred eEEEecCCCHHHHHHHHHHHhc
Q 014789 202 RKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 202 ~~i~~~~~~~~e~~~il~~~l~ 223 (418)
..++|+-+..+|...+|...+.
T Consensus 508 e~veFpLPGeEERfkll~lYln 529 (630)
T KOG0742|consen 508 EVVEFPLPGEEERFKLLNLYLN 529 (630)
T ss_pred heeecCCCChHHHHHHHHHHHH
Confidence 6799999999999999988876
No 154
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.7e-11 Score=122.42 Aligned_cols=221 Identities=17% Similarity=0.181 Sum_probs=145.8
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc-----CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE-----ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAF 102 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~-----~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~ 102 (418)
..++|.++.+..+.+.++..-.+ .+.++.++.||+|+|||-+++.++..|...- -..+++|.+.+...+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e---~aliR~DMSEy~EkHs-- 565 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE---QALIRIDMSEYMEKHS-- 565 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC---ccceeechHHHHHHHH--
Confidence 57899999999999999886433 1245788999999999999999999987433 4468888766654322
Q ss_pred HHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccC--------CC
Q 014789 103 KEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSV--------TS 174 (418)
Q Consensus 103 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~--------~~ 174 (418)
.+.|-+ .|+++.++++ --.|.+.+++ +++.||++|||++..+.-.++|++++|-.... -.
T Consensus 566 ---VSrLIG----aPPGYVGyee-GG~LTEaVRr----~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFr 633 (786)
T COG0542 566 ---VSRLIG----APPGYVGYEE-GGQLTEAVRR----KPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFR 633 (786)
T ss_pred ---HHHHhC----CCCCCceecc-ccchhHhhhc----CCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecc
Confidence 222221 2455555554 2234444443 36889999999999988888999998765431 24
Q ss_pred cEEEEEeccCCCh-----------------HHHH--------HHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCC
Q 014789 175 QAVVIGVSCRLDA-----------------DQLL--------EKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSS 229 (418)
Q Consensus 175 ~~~lI~~s~~~~~-----------------~~~l--------~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~ 229 (418)
+.++|.|||--.- .+.+ .|.+..|+. ..|.|.|++.+++.+|+...+.
T Consensus 634 NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid-~II~F~~L~~~~l~~Iv~~~L~------ 706 (786)
T COG0542 634 NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRID-EIIPFNPLSKEVLERIVDLQLN------ 706 (786)
T ss_pred eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcc-cEEeccCCCHHHHHHHHHHHHH------
Confidence 7788888885210 1122 233445554 3789999999999999998875
Q ss_pred CChHHHHHHHH-HHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHH
Q 014789 230 LPHAYAVEFNK-KIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLA 275 (418)
Q Consensus 230 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a 275 (418)
........ .+.-.+++++...++.+.++....+|-+..++..-
T Consensus 707 ---~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~ 750 (786)
T COG0542 707 ---RLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQE 750 (786)
T ss_pred ---HHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHH
Confidence 11111111 11112456666677777777666777766666543
No 155
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.31 E-value=5.3e-11 Score=111.31 Aligned_cols=260 Identities=10% Similarity=0.076 Sum_probs=143.2
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCC-ChHHHHHHH-
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHS-DDCCAFKEI- 105 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~-~~~~~~~~i- 105 (418)
..++|.++..+.+.-.+ -....++++|+|+||+|||++++.+++.+...... .-..+++.... ++ .+...
T Consensus 8 ~~i~Gq~~~~~~l~~~~----~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~--e~~~~~~~~~~~~~--~~~~~~ 79 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTA----IDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAV--EGCPVNSARPEDCP--EWAHVS 79 (334)
T ss_pred HHhCCHHHHHHHHHHHH----hccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchh--cccccccCcccCCc--cccccc
Confidence 35789998888766432 21234689999999999999999999988542210 00111111100 00 00000
Q ss_pred HHHHHHh-h-hcccccCCChHhHHH--HHHHHHhhcC--------CCceEEEEEecchhhhhhcchhHHHHHHhhhc---
Q 014789 106 ARQLCME-H-QLLFSKMASFDDNSQ--FMIEMLRECG--------LAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ--- 170 (418)
Q Consensus 106 ~~~l~~~-~-~~~~~~~~~~~~~~~--~l~~~l~~~~--------~~~~~~viilDEid~l~~~~~~~L~~l~~~~~--- 170 (418)
...+... . -..++.+.+.+..+- .+...+.... ......++++||++.+....|..|...++..+
T Consensus 80 ~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v 159 (334)
T PRK13407 80 STTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVV 159 (334)
T ss_pred CCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEE
Confidence 0000000 0 000000000000000 0000111000 00123489999999998877777777775432
Q ss_pred -------cCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCH-HHHHHHHHHHhcCCC-----------CCCCC
Q 014789 171 -------SVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSK-EDMQRLLEHILSLPV-----------DSSLP 231 (418)
Q Consensus 171 -------~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~-~e~~~il~~~l~~~~-----------~~~~~ 231 (418)
..+.++++|++.|+.+ ..+.+.+..||.. .+.+++++. ++..+|+..+..... +....
T Consensus 160 ~r~G~~~~~p~rfiviAt~NP~e--~~l~~aLldRF~~-~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~ 236 (334)
T PRK13407 160 EREGLSIRHPARFVLVGSGNPEE--GELRPQLLDRFGL-SVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQL 236 (334)
T ss_pred EECCeEEecCCCEEEEecCCccc--CCCCHHHHhhcce-EEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCC
Confidence 1245788999888743 2467788899973 466665554 788888888654221 01112
Q ss_pred hHHHHHHHHHHHHHhCChhHHHHHHHHhcccc--CHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhcc
Q 014789 232 HAYAVEFNKKIKNILADGRFKEIVNTLVNLDS--TVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNS 298 (418)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--d~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~ 298 (418)
.+-+....+.+..+.-++.+...+..++..+| ++|-.+.+++.|...|- .+.+.|+.+||..+..-.
T Consensus 237 ~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~v 306 (334)
T PRK13407 237 RGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVATMA 306 (334)
T ss_pred HHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHHh
Confidence 23344444445555556667776666665544 77887777776655543 488899999998776443
No 156
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.30 E-value=2.2e-10 Score=104.01 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=87.0
Q ss_pred HHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCC-------h--HHHHHHHhhcccCceE
Q 014789 133 MLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD-------A--DQLLEKRVRSRFSHRK 203 (418)
Q Consensus 133 ~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~-------~--~~~l~~~v~sr~~~~~ 203 (418)
.+.+....--|-|+||||+|.|.-..-.+|. +..+..-+| ++|.+||+-- + +--+...+.+|+ -.
T Consensus 282 ~ieeGkAElVpGVLFIDEvHmLDIE~FsFln---rAlEse~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl--lI 355 (450)
T COG1224 282 WIEEGKAELVPGVLFIDEVHMLDIECFSFLN---RALESELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRL--LI 355 (450)
T ss_pred HHhcCcEEeecceEEEechhhhhHHHHHHHH---HHhhcccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhhhe--eE
Confidence 3334333445899999999999653333333 344433355 4566666521 0 111222344555 46
Q ss_pred EEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH-HhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccc-
Q 014789 204 LLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKN-ILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDL- 281 (418)
Q Consensus 204 i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~- 281 (418)
|...||+.+++.+|++.|.. .++ .++++++. .+..+ +...+.|++++++.-|...|..
T Consensus 356 I~t~py~~~EireIi~iRa~------------------ee~i~l~~~Ale-~L~~i-g~etSLRYa~qLL~pa~iiA~~r 415 (450)
T COG1224 356 ISTRPYSREEIREIIRIRAK------------------EEDIELSDDALE-YLTDI-GEETSLRYAVQLLTPASIIAKRR 415 (450)
T ss_pred EecCCCCHHHHHHHHHHhhh------------------hhccccCHHHHH-HHHhh-chhhhHHHHHHhccHHHHHHHHh
Confidence 88899999999999999975 111 22344333 33332 2346899999999887777654
Q ss_pred cCCCCChhhHHHHHhc
Q 014789 282 ESGFLSFENFKTALSN 297 (418)
Q Consensus 282 ~~~~it~~~v~~a~~~ 297 (418)
++..|..+||.+|..-
T Consensus 416 g~~~V~~~dVe~a~~l 431 (450)
T COG1224 416 GSKRVEVEDVERAKEL 431 (450)
T ss_pred CCCeeehhHHHHHHHH
Confidence 6779999999988653
No 157
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.30 E-value=1.1e-10 Score=123.09 Aligned_cols=220 Identities=15% Similarity=0.132 Sum_probs=134.0
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc---C--CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE---A--CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAF 102 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~---~--~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~ 102 (418)
..++|.+..++.|...+...-.+ + +..+++++||+|+|||++++.+++.+.... ..++++++..+......-
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~---~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE---DAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc---cceEEEEchhccccccHH
Confidence 56889999999999988765331 1 134688999999999999999999886432 345777765554332111
Q ss_pred HHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCC
Q 014789 103 KEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTS 174 (418)
Q Consensus 103 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~ 174 (418)
.+.. .+++..++++. ..+.+.++.. ++.||+|||+|.+.+..++.|+.+++.... ...
T Consensus 586 -----~l~g----~~~gyvg~~~~-~~l~~~~~~~----p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~ 651 (821)
T CHL00095 586 -----KLIG----SPPGYVGYNEG-GQLTEAVRKK----PYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFK 651 (821)
T ss_pred -----HhcC----CCCcccCcCcc-chHHHHHHhC----CCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecC
Confidence 1111 12222222221 1234444432 468999999999988778888888875321 125
Q ss_pred cEEEEEeccCCC-----------h-----------------------HHHHHHHhhcccCceEEEecCCCHHHHHHHHHH
Q 014789 175 QAVVIGVSCRLD-----------A-----------------------DQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEH 220 (418)
Q Consensus 175 ~~~lI~~s~~~~-----------~-----------------------~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~ 220 (418)
+.++|.+||... + ...+.|.+.+|+. ..+.|.|++.+++.+|+..
T Consensus 652 ~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid-~ii~F~pL~~~~l~~Iv~~ 730 (821)
T CHL00095 652 NTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLD-EIIVFRQLTKNDVWEIAEI 730 (821)
T ss_pred ceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCC-eEEEeCCCCHHHHHHHHHH
Confidence 788888888421 0 0112345667775 5789999999999999988
Q ss_pred HhcCCCCCCCChHHHHHHHHH-HHHHhCChhHHHHHHHHhccccCHHHHHHHHHH
Q 014789 221 ILSLPVDSSLPHAYAVEFNKK-IKNILADGRFKEIVNTLVNLDSTVNHLLRFLFL 274 (418)
Q Consensus 221 ~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~ 274 (418)
.+. .+...+... +.-.+++++...++...+.....+|-+-.++..
T Consensus 731 ~l~---------~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~ 776 (821)
T CHL00095 731 MLK---------NLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMR 776 (821)
T ss_pred HHH---------HHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence 875 111111110 011244555555555545544456655555443
No 158
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.30 E-value=7.2e-11 Score=109.96 Aligned_cols=169 Identities=18% Similarity=0.180 Sum_probs=103.6
Q ss_pred hhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHh--hhCCCCeEEEEEccccCCChHHHHHHHHHHHH
Q 014789 33 PDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLL--LEYPDTISVIKLNGLLHSDDCCAFKEIARQLC 110 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~--~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~ 110 (418)
||+++++|.+.|...- .....+.|+|++|+|||+++..+++... ..+ -.+++++.....+...++..++.+++
T Consensus 1 re~~~~~l~~~L~~~~--~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f---~~v~wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS--NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRF---DGVIWVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTT--TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCC---TEEEEEEEES-SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCC--CCeEEEEEEcCCcCCcceeeeeccccccccccc---cccccccccccccccccccccccccc
Confidence 7899999999886632 5677888999999999999999998743 333 13445555555555778888888886
Q ss_pred HhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHH
Q 014789 111 MEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQL 190 (418)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~ 190 (418)
..... ........+..+.+.+.+.. ++.+||||+++... .+..+.........+..+|.||........
T Consensus 76 ~~~~~-~~~~~~~~~~~~~l~~~L~~-----~~~LlVlDdv~~~~-----~~~~l~~~~~~~~~~~kilvTTR~~~v~~~ 144 (287)
T PF00931_consen 76 EPDSS-ISDPKDIEELQDQLRELLKD-----KRCLLVLDDVWDEE-----DLEELREPLPSFSSGSKILVTTRDRSVAGS 144 (287)
T ss_dssp CC-ST-SSCCSSHHHHHHHHHHHHCC-----TSEEEEEEEE-SHH-----HH-------HCHHSS-EEEEEESCGGGGTT
T ss_pred ccccc-cccccccccccccchhhhcc-----ccceeeeeeecccc-----cccccccccccccccccccccccccccccc
Confidence 54310 11233455666677776654 47999999998764 222222211111234556667765332211
Q ss_pred HHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 191 LEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 191 l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
+ ... ...+.+.+++.++-.+++.....
T Consensus 145 ~----~~~--~~~~~l~~L~~~ea~~L~~~~~~ 171 (287)
T PF00931_consen 145 L----GGT--DKVIELEPLSEEEALELFKKRAG 171 (287)
T ss_dssp H----HSC--EEEEECSS--HHHHHHHHHHHHT
T ss_pred c----ccc--ccccccccccccccccccccccc
Confidence 1 111 35789999999999999999865
No 159
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.29 E-value=7.1e-11 Score=113.74 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=43.8
Q ss_pred CCCCChhhhHHHHHHHHHHH---Hhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcccc
Q 014789 28 HLSDSPDSNYSKLKFLVSSS---VTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLL 94 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~---~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~ 94 (418)
+.++|.+...+.|...+... +.. ....+++|+||||||||++++.+++.+.. .++.++|..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~------pf~~id~~~ 143 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV------PFAIADATT 143 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC------Cceecchhh
Confidence 45799999998887665321 111 12478999999999999999999987753 335666644
No 160
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=1.1e-10 Score=109.77 Aligned_cols=158 Identities=16% Similarity=0.100 Sum_probs=102.8
Q ss_pred HHhc-CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcc-ccc---CC
Q 014789 47 SVTE-ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLL-FSK---MA 121 (418)
Q Consensus 47 ~~~~-~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~-~~~---~~ 121 (418)
.+.. .-++.++++||+|+||++++..+++.+....+... -.|..+. ..+.+....+++.... +.. ..
T Consensus 17 ~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~----~~Cg~C~----sC~~~~~g~HPD~~~i~p~~~~~~I 88 (334)
T PRK07993 17 SYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGH----KSCGHCR----GCQLMQAGTHPDYYTLTPEKGKSSL 88 (334)
T ss_pred HHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCCCH----HHHHHHcCCCCCEEEEecccccccC
Confidence 3344 34778889999999999999999999876432100 0232221 1222221111111000 111 12
Q ss_pred ChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccCc
Q 014789 122 SFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSH 201 (418)
Q Consensus 122 ~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~ 201 (418)
+.++ .+.+.+.+......+...|+|||++|.|.....+.|..+++.| +.+..+|.+|+. ++.+.|.++||+
T Consensus 89 ~idq-iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP---p~~t~fiL~t~~---~~~lLpTIrSRC-- 159 (334)
T PRK07993 89 GVDA-VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEP---PENTWFFLACRE---PARLLATLRSRC-- 159 (334)
T ss_pred CHHH-HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCC---CCCeEEEEEECC---hhhChHHHHhcc--
Confidence 2333 3345555555555678999999999999876666666666554 477888888877 678999999999
Q ss_pred eEEEecCCCHHHHHHHHHHH
Q 014789 202 RKLLFLPPSKEDMQRLLEHI 221 (418)
Q Consensus 202 ~~i~~~~~~~~e~~~il~~~ 221 (418)
+.+.|+|++.+++.+.|..+
T Consensus 160 q~~~~~~~~~~~~~~~L~~~ 179 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSRE 179 (334)
T ss_pred ccccCCCCCHHHHHHHHHHc
Confidence 56899999999999988765
No 161
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.29 E-value=8.6e-11 Score=123.76 Aligned_cols=220 Identities=14% Similarity=0.155 Sum_probs=132.5
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc-----CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE-----ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAF 102 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~-----~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~ 102 (418)
..++|.+..++.|...+..+..+ .+..+++|+||+|||||++++.+++.+.... ..+++++|.......
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~---~~~i~id~se~~~~~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSD---DAMVRIDMSEFMEKH--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC---CcEEEEEhHHhhhhh---
Confidence 35889999999999999876422 1124789999999999999999998876432 345778876553321
Q ss_pred HHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCC
Q 014789 103 KEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTS 174 (418)
Q Consensus 103 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~ 174 (418)
....+-+. +++..++.+ ...+.+.++. .++.||+|||++.+.+..++.|+.+++.... .-.
T Consensus 642 --~~~~LiG~----~pgy~g~~~-~g~l~~~v~~----~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~r 710 (857)
T PRK10865 642 --SVSRLVGA----PPGYVGYEE-GGYLTEAVRR----RPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFR 710 (857)
T ss_pred --hHHHHhCC----CCcccccch-hHHHHHHHHh----CCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeec
Confidence 11122111 122222221 1123333332 2457999999999988888888888865321 113
Q ss_pred cEEEEEeccCCC--------------hHH--------HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCCh
Q 014789 175 QAVVIGVSCRLD--------------ADQ--------LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPH 232 (418)
Q Consensus 175 ~~~lI~~s~~~~--------------~~~--------~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~ 232 (418)
+.++|++||... +.+ .+.|.+.+|+. ..+.|.|++.+++.+|+...+.
T Consensus 711 n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld-~iivF~PL~~edl~~Iv~~~L~--------- 780 (857)
T PRK10865 711 NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRID-EVVVFHPLGEQHIASIAQIQLQ--------- 780 (857)
T ss_pred ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCC-eeEecCCCCHHHHHHHHHHHHH---------
Confidence 456888888621 011 23456677876 5789999999999999988874
Q ss_pred HHHHHHHH-HHHHHhCChhHHHHHHHHhccccCHHHHHHHHHH
Q 014789 233 AYAVEFNK-KIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFL 274 (418)
Q Consensus 233 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~ 274 (418)
.....+.. .+.-.++++++..++..-+...-.+|-+..++..
T Consensus 781 ~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~ 823 (857)
T PRK10865 781 RLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQ 823 (857)
T ss_pred HHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHH
Confidence 00011100 0111245555555555444444456666555544
No 162
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.28 E-value=2e-10 Score=106.97 Aligned_cols=162 Identities=10% Similarity=0.094 Sum_probs=104.7
Q ss_pred HHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh-ccccc--
Q 014789 44 VSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-LLFSK-- 119 (418)
Q Consensus 44 l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-~~~~~-- 119 (418)
|...+..+. ++.++++||+|+||+++++.+++.+....+... -.|..+. ..+.+...-+++.. +.+..
T Consensus 14 l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~----~~Cg~C~----sC~~~~~g~HPD~~~i~p~~~~ 85 (325)
T PRK06871 14 ITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD----QPCGQCH----SCHLFQAGNHPDFHILEPIDNK 85 (325)
T ss_pred HHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCCCH----HHHHHhcCCCCCEEEEccccCC
Confidence 344445444 677889999999999999999999876432100 0222221 12222211111110 00101
Q ss_pred CCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhccc
Q 014789 120 MASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRF 199 (418)
Q Consensus 120 ~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~ 199 (418)
..+.++ .+.+.+.+......++.-|+|||++|.|....++.|...++. ++.++.+|.+|+. ++.+.|.++||+
T Consensus 86 ~I~id~-iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE---Pp~~~~fiL~t~~---~~~llpTI~SRC 158 (325)
T PRK06871 86 DIGVDQ-VREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE---PRPNTYFLLQADL---SAALLPTIYSRC 158 (325)
T ss_pred CCCHHH-HHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC---CCCCeEEEEEECC---hHhCchHHHhhc
Confidence 122333 334555555555567889999999999987666666666555 4477888888876 678899999999
Q ss_pred CceEEEecCCCHHHHHHHHHHHh
Q 014789 200 SHRKLLFLPPSKEDMQRLLEHIL 222 (418)
Q Consensus 200 ~~~~i~~~~~~~~e~~~il~~~l 222 (418)
+.+.|.|++.+++.+.|....
T Consensus 159 --~~~~~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 159 --QTWLIHPPEEQQALDWLQAQS 179 (325)
T ss_pred --eEEeCCCCCHHHHHHHHHHHh
Confidence 679999999999999988763
No 163
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.28 E-value=5.3e-11 Score=100.45 Aligned_cols=152 Identities=20% Similarity=0.223 Sum_probs=87.1
Q ss_pred HHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhc-ccc
Q 014789 41 KFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQL-LFS 118 (418)
Q Consensus 41 ~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~-~~~ 118 (418)
.+.|...+..+. ++.++++||+|+||++++..+++.+....+... .|.... ..+.+......+... .+.
T Consensus 6 ~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~-----~c~~c~----~c~~~~~~~~~d~~~~~~~ 76 (162)
T PF13177_consen 6 IELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED-----PCGECR----SCRRIEEGNHPDFIIIKPD 76 (162)
T ss_dssp HHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT-------SSSH----HHHHHHTT-CTTEEEEETT
T ss_pred HHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC-----CCCCCH----HHHHHHhccCcceEEEecc
Confidence 334444455555 667899999999999999999998876542211 111111 111111111111100 011
Q ss_pred c---CCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHh
Q 014789 119 K---MASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRV 195 (418)
Q Consensus 119 ~---~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v 195 (418)
. ....+ ....+.+.+......+..-|+||||+|.|....++.|...++.+ +.++.+|.+++. .+.+.+.+
T Consensus 77 ~~~~~i~i~-~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep---p~~~~fiL~t~~---~~~il~TI 149 (162)
T PF13177_consen 77 KKKKSIKID-QIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP---PENTYFILITNN---PSKILPTI 149 (162)
T ss_dssp TSSSSBSHH-HHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST---TTTEEEEEEES----GGGS-HHH
T ss_pred cccchhhHH-HHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC---CCCEEEEEEECC---hHHChHHH
Confidence 1 12232 23345555554444567899999999999887777777766654 367888888877 56788999
Q ss_pred hcccCceEEEecCCC
Q 014789 196 RSRFSHRKLLFLPPS 210 (418)
Q Consensus 196 ~sr~~~~~i~~~~~~ 210 (418)
+||+ ..+.|+|++
T Consensus 150 ~SRc--~~i~~~~ls 162 (162)
T PF13177_consen 150 RSRC--QVIRFRPLS 162 (162)
T ss_dssp HTTS--EEEEE----
T ss_pred Hhhc--eEEecCCCC
Confidence 9999 678998864
No 164
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=99.27 E-value=1.1e-09 Score=95.53 Aligned_cols=235 Identities=14% Similarity=0.181 Sum_probs=142.8
Q ss_pred CCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHH
Q 014789 30 SDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQL 109 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 109 (418)
+.....+.++....+...+..+ .+.+.++|+.|||||.+.+++...+.+. ...+++++....+ ...+...++.++
T Consensus 29 ~~~~~a~h~e~l~~l~~~i~d~-qg~~~vtGevGsGKTv~~Ral~~s~~~d---~~~~v~i~~~~~s-~~~~~~ai~~~l 103 (269)
T COG3267 29 LDYWAADHNEALLMLHAAIADG-QGILAVTGEVGSGKTVLRRALLASLNED---QVAVVVIDKPTLS-DATLLEAIVADL 103 (269)
T ss_pred hhhhhhhhhHHHHHHHHHHhcC-CceEEEEecCCCchhHHHHHHHHhcCCC---ceEEEEecCcchh-HHHHHHHHHHHh
Confidence 3444555555555666665543 3467899999999999999666666543 3666777765544 345666777777
Q ss_pred HHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHH
Q 014789 110 CMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQ 189 (418)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~ 189 (418)
........ ........+.+.+..++. +.|+++++||++.+.....+.|.-|.+.......++.++.+..+.-...
T Consensus 104 ~~~p~~~~--~~~~e~~~~~L~al~~~g---~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~ 178 (269)
T COG3267 104 ESQPKVNV--NAVLEQIDRELAALVKKG---KRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPR 178 (269)
T ss_pred ccCccchh--HHHHHHHHHHHHHHHHhC---CCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchh
Confidence 54221100 001223334444555544 3679999999999988755666655555444445555555554421111
Q ss_pred ---HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHH
Q 014789 190 ---LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVN 266 (418)
Q Consensus 190 ---~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r 266 (418)
........|+..+ |.++|++.++...+++.+++... .+ ..+|+++++..+..+ ..|-+|
T Consensus 179 lr~~~l~e~~~R~~ir-~~l~P~~~~~t~~yl~~~Le~a~---~~-----------~~l~~~~a~~~i~~~---sqg~P~ 240 (269)
T COG3267 179 LRLPVLRELEQRIDIR-IELPPLTEAETGLYLRHRLEGAG---LP-----------EPLFSDDALLLIHEA---SQGIPR 240 (269)
T ss_pred hchHHHHhhhheEEEE-EecCCcChHHHHHHHHHHHhccC---CC-----------cccCChhHHHHHHHH---hccchH
Confidence 1122334566433 88999999999999999998331 11 124556555554443 247888
Q ss_pred HHHHHHHHHhhccc-ccCCCCChhhHH
Q 014789 267 HLLRFLFLAVSYMD-LESGFLSFENFK 292 (418)
Q Consensus 267 ~~~~~l~~a~~~a~-~~~~~it~~~v~ 292 (418)
.+.++|..|...+. .+.+.|+..++.
T Consensus 241 lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 241 LINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred HHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 88888888876653 477777766543
No 165
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.25 E-value=9.6e-11 Score=110.30 Aligned_cols=214 Identities=14% Similarity=0.130 Sum_probs=133.5
Q ss_pred CCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHH
Q 014789 30 SDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQL 109 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 109 (418)
++|.+..+..+.+.+..+.. ...+++|+|++||||+++++.+-..-.... -.++.+||...... .+. ..+
T Consensus 1 liG~S~~m~~~~~~~~~~a~--~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~---~pfv~vnc~~~~~~--~l~---~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP--LDRPVLIIGERGTGKELIAARLHYLSKRWQ---GPLVKLNCAALSEN--LLD---SEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC--CCCCEEEECCCCChHHHHHHHHHHhcCccC---CCeEEEeCCCCChH--HHH---HHH
Confidence 47888999999999988754 467899999999999999998766543322 34688899765421 221 111
Q ss_pred HHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEEEEe
Q 014789 110 CMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVVIGV 181 (418)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~lI~~ 181 (418)
.......+.+... .. ...+.. ....+|+|||++.|....|..|..+++.... ...++-+|++
T Consensus 71 fG~~~g~~~ga~~---~~---~G~~~~----a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~a 140 (329)
T TIGR02974 71 FGHEAGAFTGAQK---RH---QGRFER----ADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCA 140 (329)
T ss_pred hccccccccCccc---cc---CCchhh----CCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEe
Confidence 1110000110000 00 001111 1356899999999998888888777754321 1246788888
Q ss_pred ccCCChHH-----HHHHHhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH----HHhCChh
Q 014789 182 SCRLDADQ-----LLEKRVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK----NILADGR 250 (418)
Q Consensus 182 s~~~~~~~-----~l~~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 250 (418)
|+. ++.+ .+.+.+..|++...|.+||+. .+++..++.+.+. .++.... ..+++++
T Consensus 141 t~~-~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~-------------~~~~~~~~~~~~~ls~~a 206 (329)
T TIGR02974 141 TNA-DLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAI-------------RMARELGLPLFPGFTPQA 206 (329)
T ss_pred chh-hHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHH-------------HHHHHhCCCCCCCcCHHH
Confidence 876 3222 345677788876678999998 6788877777653 2222111 1234444
Q ss_pred HHHHHHHHhccccCHHHHHHHHHHHhhcc
Q 014789 251 FKEIVNTLVNLDSTVNHLLRFLFLAVSYM 279 (418)
Q Consensus 251 ~~~~~~~~~~~~gd~r~~~~~l~~a~~~a 279 (418)
+..+.. +...||+|.+.+++.+++..+
T Consensus 207 ~~~L~~--y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 207 REQLLE--YHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHHHh--CCCCchHHHHHHHHHHHHHhC
Confidence 433333 345799999999999887664
No 166
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.23 E-value=7.4e-10 Score=95.42 Aligned_cols=159 Identities=18% Similarity=0.264 Sum_probs=114.1
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++|-+.+.+.|.+....++.+.+.++++++|.+|||||++++++..++..+. .+.|.|+-....+ +..|.
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~g---lrLVEV~k~dl~~----Lp~l~-- 131 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEG---LRLVEVDKEDLAT----LPDLV-- 131 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcC---CeEEEEcHHHHhh----HHHHH--
Confidence 47899999999999999999999999999999999999999999999998876 5677776433221 22233
Q ss_pred HHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-chhHHHHHHhhh-ccCCCcEEEEEeccCCC
Q 014789 109 LCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-KQRLLYSLLDAM-QSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-~~~~L~~l~~~~-~~~~~~~~lI~~s~~~~ 186 (418)
+.|+.. ....||+.|++-.=... .-..|...++-. +..+.++++.++||+-.
T Consensus 132 -----------------------~~Lr~~---~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 132 -----------------------ELLRAR---PEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred -----------------------HHHhcC---CceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 333332 36899999986332222 334555555543 23457899999999754
Q ss_pred hH-HHHH----------------HH--hhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 187 AD-QLLE----------------KR--VRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 187 ~~-~~l~----------------~~--v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
+. +.+. .+ +..||+. -+.|.|.+.++...|+.+.+.
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGL-wL~F~~~~Q~~YL~~V~~~a~ 240 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGL-WLSFYPCDQDEYLKIVDHYAK 240 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcce-eecccCCCHHHHHHHHHHHHH
Confidence 32 2221 11 2357763 578999999999999999875
No 167
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.23 E-value=2.5e-10 Score=109.38 Aligned_cols=215 Identities=13% Similarity=0.102 Sum_probs=117.4
Q ss_pred CCCCChhhhHHHHHHHHHHHH---hc---C--------CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccc
Q 014789 28 HLSDSPDSNYSKLKFLVSSSV---TE---A--------CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGL 93 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~---~~---~--------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~ 93 (418)
..++|.++..+.+...+.... .. . ...+++|+||||+|||++++.+++.+.. .++.++|.
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~------pf~~~da~ 150 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNV------PFAIADAT 150 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCC------CeEEechh
Confidence 467999999998877663211 11 1 1368999999999999999999987642 23444543
Q ss_pred cCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--------------ch
Q 014789 94 LHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--------------KQ 159 (418)
Q Consensus 94 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--------------~~ 159 (418)
....+. .. +......+..+.......-....+.||+|||+|.+..+ .|
T Consensus 151 ~L~~~g-yv-----------------G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq 212 (413)
T TIGR00382 151 TLTEAG-YV-----------------GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQ 212 (413)
T ss_pred hccccc-cc-----------------cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHH
Confidence 321100 00 00001111111100000000124569999999999862 35
Q ss_pred hHHHHHHhhhc-----c-----CCCcEEEEEeccCC-----------------------Ch-------------------
Q 014789 160 RLLYSLLDAMQ-----S-----VTSQAVVIGVSCRL-----------------------DA------------------- 187 (418)
Q Consensus 160 ~~L~~l~~~~~-----~-----~~~~~~lI~~s~~~-----------------------~~------------------- 187 (418)
..|..+++-.. . ...+.++|.|+|-. .|
T Consensus 213 ~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~ 292 (413)
T TIGR00382 213 QALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVE 292 (413)
T ss_pred HHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHH
Confidence 66666664211 0 11345566665541 00
Q ss_pred ----HH-HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH-----HHHhCChhHHHHHHH
Q 014789 188 ----DQ-LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKI-----KNILADGRFKEIVNT 257 (418)
Q Consensus 188 ----~~-~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~ 257 (418)
.. .+.|.+..|+. ..+.|.|++.+++.+|+...+. ..+.+|.+.. .-.++++++..++++
T Consensus 293 ~~dl~~~g~~PEflgRld-~Iv~f~pL~~~~L~~Il~~~~n---------~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~ 362 (413)
T TIGR00382 293 PEDLVKFGLIPEFIGRLP-VIATLEKLDEEALIAILTKPKN---------ALVKQYQALFKMDNVELDFEEEALKAIAKK 362 (413)
T ss_pred HHHHHHHhhHHHHhCCCC-eEeecCCCCHHHHHHHHHHHHH---------HHHHHHHHHhccCCeEEEECHHHHHHHHHh
Confidence 01 14466667775 4678999999999999987532 1222232211 112456666667776
Q ss_pred HhccccCHHHHHHHHHHHh
Q 014789 258 LVNLDSTVNHLLRFLFLAV 276 (418)
Q Consensus 258 ~~~~~gd~r~~~~~l~~a~ 276 (418)
.+...-.+|.+-.++...+
T Consensus 363 ~~~~~~GAR~Lr~iie~~l 381 (413)
T TIGR00382 363 ALERKTGARGLRSIVEGLL 381 (413)
T ss_pred CCCCCCCchHHHHHHHHhh
Confidence 6655555666655555443
No 168
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.23 E-value=4.2e-11 Score=107.21 Aligned_cols=192 Identities=15% Similarity=0.139 Sum_probs=118.3
Q ss_pred CCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHH
Q 014789 30 SDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQL 109 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 109 (418)
+++.++.+..+.++ ...+.-+++|+|||||||||+.+.+.+..+....+-...+..+|+...
T Consensus 43 v~~~~ei~st~~~~----~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~-------------- 104 (360)
T KOG0990|consen 43 VIKQEPIWSTENRY----SGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDD-------------- 104 (360)
T ss_pred HhcCCchhhHHHHh----ccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCc--------------
Confidence 45666666666665 344556699999999999999999999887653211111122222211
Q ss_pred HHhhhcccccCCChHhHHHHHHHHHhhcC---CCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 110 CMEHQLLFSKMASFDDNSQFMIEMLRECG---LAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
++.........++....... .-....++|+||+|.+....|..|...... ...+..++.++|.
T Consensus 105 ---------rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek---~t~n~rF~ii~n~-- 170 (360)
T KOG0990|consen 105 ---------RGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEK---YTANTRFATISNP-- 170 (360)
T ss_pred ---------cCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHH---hccceEEEEeccC--
Confidence 11111122222222222110 012578999999999999889888874332 2355556555555
Q ss_pred hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHH
Q 014789 187 ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVN 266 (418)
Q Consensus 187 ~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r 266 (418)
+..+.|.++|||. .+.|.|++..+....+++..+.+... ..++. ...+.+ ...||.|
T Consensus 171 -~~ki~pa~qsRct--rfrf~pl~~~~~~~r~shi~e~e~~~-----------------~~~~~-~~a~~r--~s~gDmr 227 (360)
T KOG0990|consen 171 -PQKIHPAQQSRCT--RFRFAPLTMAQQTERQSHIRESEQKE-----------------TNPEG-YSALGR--LSVGDMR 227 (360)
T ss_pred -hhhcCchhhcccc--cCCCCCCChhhhhhHHHHHHhcchhh-----------------cCHHH-HHHHHH--HhHHHHH
Confidence 6778899999995 58999999999999988887632211 11111 111111 1359999
Q ss_pred HHHHHHHHHh
Q 014789 267 HLLRFLFLAV 276 (418)
Q Consensus 267 ~~~~~l~~a~ 276 (418)
.+++.+....
T Consensus 228 ~a~n~Lqs~~ 237 (360)
T KOG0990|consen 228 VALNYLQSIL 237 (360)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 169
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.22 E-value=2.2e-10 Score=108.04 Aligned_cols=216 Identities=13% Similarity=0.111 Sum_probs=133.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
+.++|++..+..+.+.+..+.. ...+++|+|++||||+++++.+-..-.... -.++.+||..... . .+..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~--~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~---~pfv~v~c~~~~~-~-~~~~--- 75 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAP--LDKPVLIIGERGTGKELIASRLHYLSSRWQ---GPFISLNCAALNE-N-LLDS--- 75 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHHHhCCccC---CCeEEEeCCCCCH-H-HHHH---
Confidence 4689999999999999999864 356899999999999999998765433221 3468889987542 1 2221
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEEE
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVVI 179 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~lI 179 (418)
.+.......+.+. . ... ...+.. .....|+|||+|.|....|..|..+++.... ...++-+|
T Consensus 76 ~lfg~~~~~~~g~-~-~~~----~g~l~~----a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI 145 (326)
T PRK11608 76 ELFGHEAGAFTGA-Q-KRH----PGRFER----ADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLV 145 (326)
T ss_pred HHccccccccCCc-c-ccc----CCchhc----cCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEE
Confidence 1111100000000 0 000 011111 1345789999999998888888887754321 11356778
Q ss_pred EeccCCChHH-----HHHHHhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH----HHhCC
Q 014789 180 GVSCRLDADQ-----LLEKRVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK----NILAD 248 (418)
Q Consensus 180 ~~s~~~~~~~-----~l~~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~ 248 (418)
++++. ++.+ .+.+.+..||+...|.+||+. .+++..++.+.+. .++.... ..+++
T Consensus 146 ~~s~~-~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~-------------~~~~~~~~~~~~~~s~ 211 (326)
T PRK11608 146 CATNA-DLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAI-------------QMCRELGLPLFPGFTE 211 (326)
T ss_pred EeCch-hHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHH-------------HHHHHhCCCCCCCCCH
Confidence 87765 3322 344667778876679999997 5678777777653 2222111 01344
Q ss_pred hhHHHHHHHHhccccCHHHHHHHHHHHhhcc
Q 014789 249 GRFKEIVNTLVNLDSTVNHLLRFLFLAVSYM 279 (418)
Q Consensus 249 ~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a 279 (418)
+++..+.. +...||+|.+.+++.+++..+
T Consensus 212 ~al~~L~~--y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 212 RARETLLN--YRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHHHHh--CCCCcHHHHHHHHHHHHHHhc
Confidence 43333333 445799999999999987654
No 170
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=9.4e-10 Score=102.28 Aligned_cols=160 Identities=18% Similarity=0.186 Sum_probs=100.1
Q ss_pred HHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhc---cc
Q 014789 42 FLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQL---LF 117 (418)
Q Consensus 42 ~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~---~~ 117 (418)
+.+...+..+. ++.++++||+|+||++++..+++.+-...+.. |..+. ..+.+...-+++... .+
T Consensus 14 ~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~-------~~~c~----~c~~~~~g~HPD~~~i~~~p 82 (319)
T PRK08769 14 DQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDP-------AAAQR----TRQLIAAGTHPDLQLVSFIP 82 (319)
T ss_pred HHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCC-------CCcch----HHHHHhcCCCCCEEEEecCC
Confidence 33444445544 66789999999999999999999886543110 10000 011111100000000 01
Q ss_pred cc-C------CChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHH
Q 014789 118 SK-M------ASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQL 190 (418)
Q Consensus 118 ~~-~------~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~ 190 (418)
.. + ... +..+.+.+.+......++..|+|||++|.|....++.|...++.+ ..+..+|.+++. .+.
T Consensus 83 ~~~~~k~~~~I~i-dqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP---p~~~~fiL~~~~---~~~ 155 (319)
T PRK08769 83 NRTGDKLRTEIVI-EQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEP---SPGRYLWLISAQ---PAR 155 (319)
T ss_pred CcccccccccccH-HHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCC---CCCCeEEEEECC---hhh
Confidence 00 0 112 223344444544445567899999999999876666666666554 367778888876 667
Q ss_pred HHHHhhcccCceEEEecCCCHHHHHHHHHHH
Q 014789 191 LEKRVRSRFSHRKLLFLPPSKEDMQRLLEHI 221 (418)
Q Consensus 191 l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~ 221 (418)
+.|.++||+ +.+.|.+++.+++.+.|...
T Consensus 156 lLpTIrSRC--q~i~~~~~~~~~~~~~L~~~ 184 (319)
T PRK08769 156 LPATIRSRC--QRLEFKLPPAHEALAWLLAQ 184 (319)
T ss_pred CchHHHhhh--eEeeCCCcCHHHHHHHHHHc
Confidence 889999999 67999999999999988764
No 171
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.22 E-value=4.1e-10 Score=105.57 Aligned_cols=262 Identities=11% Similarity=0.038 Sum_probs=150.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
..++|.++....|... +.++..+.++|.|++|||||++++.+.+-+......... .++|.... +......+..
T Consensus 17 ~~ivGq~~~k~al~~~----~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~--pf~~~p~~-p~~~~~~~~~ 89 (350)
T CHL00081 17 TAIVGQEEMKLALILN----VIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDD--PFNSHPSD-PELMSDEVRE 89 (350)
T ss_pred HHHhChHHHHHHHHHh----ccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCC--CCCCCCCC-hhhhchhhhh
Confidence 4578888766655443 455566789999999999999999998887753311001 12332222 1111111111
Q ss_pred HHHHhh-------h---cccccCCChHhHHHH--HHHHHhhcC--------CCceEEEEEecchhhhhhcchhHHHHHHh
Q 014789 108 QLCMEH-------Q---LLFSKMASFDDNSQF--MIEMLRECG--------LAHKTIIFVLDEFDLFAQGKQRLLYSLLD 167 (418)
Q Consensus 108 ~l~~~~-------~---~~~~~~~~~~~~~~~--l~~~l~~~~--------~~~~~~viilDEid~l~~~~~~~L~~l~~ 167 (418)
...... . ...+.+.+.+..+-. +...+.... ......+|++||++.+....|..|...++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~ 169 (350)
T CHL00081 90 AIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAA 169 (350)
T ss_pred hhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHH
Confidence 110000 0 001111111111000 111111110 01134689999999999988887777765
Q ss_pred hhc----------cCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCC-HHHHHHHHHHHhcCCCC---------
Q 014789 168 AMQ----------SVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPS-KEDMQRLLEHILSLPVD--------- 227 (418)
Q Consensus 168 ~~~----------~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~-~~e~~~il~~~l~~~~~--------- 227 (418)
... ..+.++++|++.|+.+ ..+.+.+..||.. .+.+..++ .++..+|++.+.....+
T Consensus 170 e~~~~ier~G~s~~~p~rfiviaT~np~e--g~l~~~LldRf~l-~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~ 246 (350)
T CHL00081 170 SGWNTVEREGISIRHPARFVLVGSGNPEE--GELRPQLLDRFGM-HAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYE 246 (350)
T ss_pred hCCeEEeeCCeeeecCCCEEEEeccCccc--CCCCHHHHHHhCc-eeecCCCCChHHHHHHHHhhhccccChhhhhhhhc
Confidence 421 1245788888887642 3577888999973 56776665 58888999887542211
Q ss_pred --CCCChHHHHHHHHHHHHHhCChhHHHHHHHHhcccc--CHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccC
Q 014789 228 --SSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDS--TVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSH 299 (418)
Q Consensus 228 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--d~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~ 299 (418)
.....+-+..+...+..+.-++.+...+..++..+| ++|-.+.+++.|-..|- .+...|+++||..+..-+.
T Consensus 247 ~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL 323 (350)
T CHL00081 247 ESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCL 323 (350)
T ss_pred cccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 011223333333344444456667777766666555 68888888887766654 4889999999998876544
No 172
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.20 E-value=1.9e-09 Score=94.75 Aligned_cols=194 Identities=18% Similarity=0.203 Sum_probs=124.0
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCC---------------CCe--------
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYP---------------DTI-------- 85 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~---------------~~~-------- 85 (418)
.+.++++.-..+... ...+.-+++++|||+|+||-|.+..+++++-...- .+.
T Consensus 14 ~l~~~~e~~~~Lksl----~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~ 89 (351)
T KOG2035|consen 14 ELIYHEELANLLKSL----SSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSN 89 (351)
T ss_pred hcccHHHHHHHHHHh----cccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEeccc
Confidence 356666665555544 33455789999999999999999999999865321 001
Q ss_pred EEEEEccccCC-ChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHH
Q 014789 86 SVIKLNGLLHS-DDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYS 164 (418)
Q Consensus 86 ~~v~in~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~ 164 (418)
..+.++.+... .++-+++++++++....++.. ..+....|+||-|+|.|....|..|..
T Consensus 90 yHlEitPSDaG~~DRvViQellKevAQt~qie~--------------------~~qr~fKvvvi~ead~LT~dAQ~aLRR 149 (351)
T KOG2035|consen 90 YHLEITPSDAGNYDRVVIQELLKEVAQTQQIET--------------------QGQRPFKVVVINEADELTRDAQHALRR 149 (351)
T ss_pred ceEEeChhhcCcccHHHHHHHHHHHHhhcchhh--------------------ccccceEEEEEechHhhhHHHHHHHHH
Confidence 11222322221 123445555555544321100 123467899999999999888888887
Q ss_pred HHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH
Q 014789 165 LLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKN 244 (418)
Q Consensus 165 l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 244 (418)
-++-.. +++-+|.+.|. ..++-+.++||+ -.|+.+.++.+|+..++..-++ .++
T Consensus 150 TMEkYs---~~~RlIl~cns---~SriIepIrSRC--l~iRvpaps~eeI~~vl~~v~~---kE~--------------- 203 (351)
T KOG2035|consen 150 TMEKYS---SNCRLILVCNS---TSRIIEPIRSRC--LFIRVPAPSDEEITSVLSKVLK---KEG--------------- 203 (351)
T ss_pred HHHHHh---cCceEEEEecC---cccchhHHhhhe--eEEeCCCCCHHHHHHHHHHHHH---Hhc---------------
Confidence 665433 44555555555 456778899999 4689999999999999998775 111
Q ss_pred HhCChhHHHHHHHHhc-cccCHHHHHHHHHHH
Q 014789 245 ILADGRFKEIVNTLVN-LDSTVNHLLRFLFLA 275 (418)
Q Consensus 245 ~~~~~~~~~~~~~~~~-~~gd~r~~~~~l~~a 275 (418)
+--+ .+.+.+++. ..||.|+++-++..+
T Consensus 204 l~lp---~~~l~rIa~kS~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 204 LQLP---KELLKRIAEKSNRNLRRALLMLEAV 232 (351)
T ss_pred ccCc---HHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1112 234444443 368999999877654
No 173
>PF14516 AAA_35: AAA-like domain
Probab=99.20 E-value=2.2e-08 Score=94.73 Aligned_cols=180 Identities=14% Similarity=0.112 Sum_probs=110.3
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccC-----CChHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLH-----SDDCCAFK 103 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~-----~~~~~~~~ 103 (418)
..+.|...-+.+.+.+ . .++..+.|.||+.+|||+++..+.+.+.... +.++++++... .+...+++
T Consensus 12 ~Yi~R~~~e~~~~~~i----~-~~G~~~~I~apRq~GKTSll~~l~~~l~~~~---~~~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 12 FYIERPPAEQECYQEI----V-QPGSYIRIKAPRQMGKTSLLLRLLERLQQQG---YRCVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred cccCchHHHHHHHHHH----h-cCCCEEEEECcccCCHHHHHHHHHHHHHHCC---CEEEEEEeecCCCcccCCHHHHHH
Confidence 3456774444444443 2 1367899999999999999999999988754 78888888763 24556777
Q ss_pred HHHHHHHHhhhcccc-------cCCChHhHHHHHHHH-HhhcCCCceEEEEEecchhhhhhc---chhHHHHHHhhhccC
Q 014789 104 EIARQLCMEHQLLFS-------KMASFDDNSQFMIEM-LRECGLAHKTIIFVLDEFDLFAQG---KQRLLYSLLDAMQSV 172 (418)
Q Consensus 104 ~i~~~l~~~~~~~~~-------~~~~~~~~~~~l~~~-l~~~~~~~~~~viilDEid~l~~~---~~~~L~~l~~~~~~~ 172 (418)
.++..+...-+.... ...+.......+.+. +... .+|+||+|||+|.+... ..+++..|-.|.+..
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~---~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQI---DKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcC---CCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 777777554322110 111222333334443 3333 48999999999999874 234444443443321
Q ss_pred -----CCcEEEEEeccCCChHHHHHHHhhcccC-ceEEEecCCCHHHHHHHHHHH
Q 014789 173 -----TSQAVVIGVSCRLDADQLLEKRVRSRFS-HRKLLFLPPSKEDMQRLLEHI 221 (418)
Q Consensus 173 -----~~~~~lI~~s~~~~~~~~l~~~v~sr~~-~~~i~~~~~~~~e~~~il~~~ 221 (418)
-.++.+|++.....+ .....-.|.|. ...|.+++++.+|+.++++..
T Consensus 161 ~~~~~~~~L~li~~~~t~~~--~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~ 213 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDY--IILDINQSPFNIGQPIELPDFTPEEVQELAQRY 213 (331)
T ss_pred ccCcccceEEEEEecCcccc--cccCCCCCCcccccceeCCCCCHHHHHHHHHhh
Confidence 134556555543221 11222356665 346889999999999887654
No 174
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.20 E-value=4.1e-10 Score=105.63 Aligned_cols=154 Identities=12% Similarity=0.050 Sum_probs=97.7
Q ss_pred EEEEEecchhhhhhcchhHHHHHHhhhc----------cCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCC-H
Q 014789 143 TIIFVLDEFDLFAQGKQRLLYSLLDAMQ----------SVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPS-K 211 (418)
Q Consensus 143 ~~viilDEid~l~~~~~~~L~~l~~~~~----------~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~-~ 211 (418)
..+++|||++.+....|..|...++..+ ..+.++++|++.|.. ...+.+.+.+||.. .+.+.+++ .
T Consensus 132 ~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~--eg~l~~~LldRf~l-~i~l~~p~~~ 208 (337)
T TIGR02030 132 RGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPE--EGELRPQLLDRFGL-HAEIRTVRDV 208 (337)
T ss_pred CCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccc--cCCCCHHHHhhcce-EEECCCCCCH
Confidence 4689999999998887787777765421 123578888888764 23577889999974 45665555 4
Q ss_pred HHHHHHHHHHhcCCCC-CC----------CChHHHHHHHHHHHHHhCChhHHHHHHHHhcccc--CHHHHHHHHHHHhhc
Q 014789 212 EDMQRLLEHILSLPVD-SS----------LPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDS--TVNHLLRFLFLAVSY 278 (418)
Q Consensus 212 ~e~~~il~~~l~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--d~r~~~~~l~~a~~~ 278 (418)
++..+|++.+.....+ .. ....-+......+..+.-++.+...+..++...| +.|..+.+++.|-+.
T Consensus 209 eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~ 288 (337)
T TIGR02030 209 ELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKAL 288 (337)
T ss_pred HHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHH
Confidence 7888999886542111 00 0111122222222333334455555555554444 478888888877766
Q ss_pred cc-ccCCCCChhhHHHHHhccC
Q 014789 279 MD-LESGFLSFENFKTALSNSH 299 (418)
Q Consensus 279 a~-~~~~~it~~~v~~a~~~~~ 299 (418)
|- .+...|+++||..+..-+.
T Consensus 289 Aal~GR~~V~~dDv~~~a~~vL 310 (337)
T TIGR02030 289 AAFEGRTEVTVDDIRRVAVLAL 310 (337)
T ss_pred HHHcCCCCCCHHHHHHHHHHHH
Confidence 54 4889999999998776543
No 175
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.19 E-value=4.2e-10 Score=106.73 Aligned_cols=145 Identities=21% Similarity=0.288 Sum_probs=94.2
Q ss_pred CCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCC------------------CCeEEEEE
Q 014789 30 SDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYP------------------DTISVIKL 90 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~------------------~~~~~v~i 90 (418)
+++-+.....+...... .+. ++.++++||||+|||+++..+++.+....+ ....++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~---~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel 79 (325)
T COG0470 3 LVPWQEAVKRLLVQALE---SGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLEL 79 (325)
T ss_pred cccchhHHHHHHHHHHh---cCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEe
Confidence 34455555555554432 233 445999999999999999999999885441 11345556
Q ss_pred ccccCCCh---HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHh
Q 014789 91 NGLLHSDD---CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLD 167 (418)
Q Consensus 91 n~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~ 167 (418)
|....... ...++++.+ ........++..|++|||+|.+....++.+...+.
T Consensus 80 ~~s~~~~~~i~~~~vr~~~~-------------------------~~~~~~~~~~~kviiidead~mt~~A~nallk~lE 134 (325)
T COG0470 80 NPSDLRKIDIIVEQVRELAE-------------------------FLSESPLEGGYKVVIIDEADKLTEDAANALLKTLE 134 (325)
T ss_pred cccccCCCcchHHHHHHHHH-------------------------HhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhc
Confidence 65444331 112222222 22222223578999999999998876666666555
Q ss_pred hhccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCC
Q 014789 168 AMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPS 210 (418)
Q Consensus 168 ~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~ 210 (418)
. .+.+..+|.++|. +..+.+.++||+ ..+.|.|++
T Consensus 135 e---p~~~~~~il~~n~---~~~il~tI~SRc--~~i~f~~~~ 169 (325)
T COG0470 135 E---PPKNTRFILITND---PSKILPTIRSRC--QRIRFKPPS 169 (325)
T ss_pred c---CCCCeEEEEEcCC---hhhccchhhhcc--eeeecCCch
Confidence 4 3467788888884 667778999999 679999843
No 176
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.18 E-value=1.3e-09 Score=109.28 Aligned_cols=231 Identities=14% Similarity=0.128 Sum_probs=138.5
Q ss_pred CCCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHH
Q 014789 22 PNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCA 101 (418)
Q Consensus 22 ~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~ 101 (418)
..+.+ +.++|.+..+.++.+.+..... ...+++|+|++||||+++++++-...... .-.++.+||...... .
T Consensus 199 ~~~~f-~~~ig~s~~~~~~~~~~~~~A~--~~~pvlI~GE~GtGK~~lA~aiH~~s~r~---~~pfv~inca~~~~~--~ 270 (520)
T PRK10820 199 DDSAF-SQIVAVSPKMRQVVEQARKLAM--LDAPLLITGDTGTGKDLLAYACHLRSPRG---KKPFLALNCASIPDD--V 270 (520)
T ss_pred ccccc-cceeECCHHHHHHHHHHHHHhC--CCCCEEEECCCCccHHHHHHHHHHhCCCC---CCCeEEeccccCCHH--H
Confidence 34455 5799999999999998887654 35679999999999999999864432221 134678999776531 1
Q ss_pred HHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CC
Q 014789 102 FKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VT 173 (418)
Q Consensus 102 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~ 173 (418)
+. +.+.......++.. .+... ..+.. .....|+|||+|.|....|..|..+++.... ..
T Consensus 271 ~e---~elFG~~~~~~~~~---~~~~~---g~~e~----a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 337 (520)
T PRK10820 271 VE---SELFGHAPGAYPNA---LEGKK---GFFEQ----ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVH 337 (520)
T ss_pred HH---HHhcCCCCCCcCCc---ccCCC---Chhhh----cCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCccee
Confidence 21 11211100001000 00000 01111 1245789999999998888888777754221 12
Q ss_pred CcEEEEEeccCCChHHH-----HHHHhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH---
Q 014789 174 SQAVVIGVSCRLDADQL-----LEKRVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK--- 243 (418)
Q Consensus 174 ~~~~lI~~s~~~~~~~~-----l~~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~--- 243 (418)
.++-+|++|+. ++.+. +.+.+..|+....|.+||+. .+++..++.+.+. .++....
T Consensus 338 ~~vRiI~st~~-~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~-------------~~~~~~g~~~ 403 (520)
T PRK10820 338 VDVRVICATQK-NLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVA-------------RFADEQGVPR 403 (520)
T ss_pred eeeEEEEecCC-CHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHH-------------HHHHHcCCCC
Confidence 35667777665 33333 34557778776678999997 4567766666553 2222111
Q ss_pred HHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhH
Q 014789 244 NILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENF 291 (418)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v 291 (418)
..++++++..+.. +...||+|.+.+++.+|+..++ ...|+.+|+
T Consensus 404 ~~ls~~a~~~L~~--y~WPGNvreL~nvl~~a~~~~~--~~~i~~~~~ 447 (520)
T PRK10820 404 PKLAADLNTVLTR--YGWPGNVRQLKNAIYRALTQLE--GYELRPQDI 447 (520)
T ss_pred CCcCHHHHHHHhc--CCCCCHHHHHHHHHHHHHHhCC--CCcccHHHc
Confidence 0234443333222 3458999999999999887643 346777775
No 177
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=2.2e-10 Score=107.33 Aligned_cols=157 Identities=18% Similarity=0.137 Sum_probs=101.5
Q ss_pred hcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh--------------
Q 014789 49 TEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-------------- 114 (418)
Q Consensus 49 ~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-------------- 114 (418)
.+.-++.++++||+|+||+++++.+++.+....+... .-.|..+.+ .+.+....+....
T Consensus 17 ~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~---~~~Cg~C~~----C~~~~~~~HPD~~~i~p~~~~~~~~~~ 89 (342)
T PRK06964 17 RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPD---GEPCGTCAA----CNWFAQGNHPDYRIVRPEALAAEAPGA 89 (342)
T ss_pred cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCC---CCCCCCCHH----HHHHHcCCCCCEEEEeccccccccccc
Confidence 4455888999999999999999999999876542100 001211110 1111100000000
Q ss_pred ----------------cccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEE
Q 014789 115 ----------------LLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVV 178 (418)
Q Consensus 115 ----------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~l 178 (418)
..+++....++ .+.+.+.+......++.-|+|||++|.|.....+.|...++. .+.++.+
T Consensus 90 ~~~~~~~~~~~~~~k~~~~~~~I~idq-iR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE---Pp~~t~f 165 (342)
T PRK06964 90 ADEAKEADADEGGKKTKAPSKEIKIEQ-VRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEE---PPPGTVF 165 (342)
T ss_pred ccccccchhhcccccccccccccCHHH-HHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcC---CCcCcEE
Confidence 00111122333 334455555444566788999999999987666666666654 4477888
Q ss_pred EEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHH
Q 014789 179 IGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHI 221 (418)
Q Consensus 179 I~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~ 221 (418)
|.+|+. ++.+.|.++||+ +.+.|+|++.+++.+.|..+
T Consensus 166 iL~t~~---~~~LLpTI~SRc--q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 166 LLVSAR---IDRLLPTILSRC--RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEECC---hhhCcHHHHhcC--EEEEecCCCHHHHHHHHHHc
Confidence 988877 678999999999 67999999999999999875
No 178
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.18 E-value=3.4e-10 Score=114.34 Aligned_cols=227 Identities=16% Similarity=0.181 Sum_probs=141.5
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
+.++|.+..+.++.+.+..+.. ...+++|+|++|||||++++.+........ -.++.+||...... .+. .
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~--~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~---~pfv~i~c~~~~~~--~~~---~ 265 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVAR--SNSTVLLRGESGTGKELIAKAIHYLSPRAK---RPFVKVNCAALSET--LLE---S 265 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhC--cCCCEEEECCCCccHHHHHHHHHHhCCCCC---CCeEEeecCCCCHH--HHH---H
Confidence 5789999999999999988754 466899999999999999999877654322 34688999776431 221 1
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEEE
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVVI 179 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~lI 179 (418)
.+.+.....+.+... .. ...+. .....+|+|||++.|....|..|..+++.... ...++-+|
T Consensus 266 ~lfg~~~~~~~~~~~--~~----~g~~~----~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 335 (534)
T TIGR01817 266 ELFGHEKGAFTGAIA--QR----KGRFE----LADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLV 335 (534)
T ss_pred HHcCCCCCccCCCCc--CC----CCccc----ccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEE
Confidence 221110000000000 00 00011 11346799999999998888888887754321 11357788
Q ss_pred EeccCCChHHH-----HHHHhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH--HHhCChh
Q 014789 180 GVSCRLDADQL-----LEKRVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK--NILADGR 250 (418)
Q Consensus 180 ~~s~~~~~~~~-----l~~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 250 (418)
++|+. ++.+. +.+.+..|++...|.+||+. .+++..++.+.+. .++.... ..+++++
T Consensus 336 ~~s~~-~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~-------------~~~~~~~~~~~~s~~a 401 (534)
T TIGR01817 336 AATNR-DLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLE-------------KFNRENGRPLTITPSA 401 (534)
T ss_pred EeCCC-CHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHH-------------HHHHHcCCCCCCCHHH
Confidence 88765 33332 33456667776678999997 6788888777664 1221110 1234443
Q ss_pred HHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHH
Q 014789 251 FKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFK 292 (418)
Q Consensus 251 ~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~ 292 (418)
+..+.. +...||+|.+.+++.+++..+ ....|+.+|+.
T Consensus 402 ~~~L~~--~~WPGNvrEL~~v~~~a~~~~--~~~~I~~~~l~ 439 (534)
T TIGR01817 402 IRVLMS--CKWPGNVRELENCLERTATLS--RSGTITRSDFS 439 (534)
T ss_pred HHHHHh--CCCCChHHHHHHHHHHHHHhC--CCCcccHHHCc
Confidence 333333 345799999999999987653 34468877764
No 179
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.17 E-value=8.7e-10 Score=110.41 Aligned_cols=229 Identities=16% Similarity=0.104 Sum_probs=140.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
..++|++..++.+.+.+..... ...+++|+|++|||||++++.+........ -.++.+||...... .+. +
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~--~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~---~p~v~v~c~~~~~~--~~e---~ 256 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAA--SDLNVLILGETGVGKELVARAIHAASPRAD---KPLVYLNCAALPES--LAE---S 256 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhC--CCCcEEEECCCCccHHHHHHHHHHhCCcCC---CCeEEEEcccCChH--HHH---H
Confidence 5789999999999999998654 467899999999999999999877654322 45688999876531 121 1
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEEE
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVVI 179 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~lI 179 (418)
.+....+..+.+... .. ...+.. .....|+|||+|.|....|..|..+++.... ...++-+|
T Consensus 257 ~lfG~~~g~~~ga~~--~~----~g~~~~----a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI 326 (509)
T PRK05022 257 ELFGHVKGAFTGAIS--NR----SGKFEL----ADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVI 326 (509)
T ss_pred HhcCccccccCCCcc--cC----Ccchhh----cCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEE
Confidence 221111011111000 00 000111 1345689999999998877777777654221 12467888
Q ss_pred EeccCCChHHH-----HHHHhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH---HHhCCh
Q 014789 180 GVSCRLDADQL-----LEKRVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK---NILADG 249 (418)
Q Consensus 180 ~~s~~~~~~~~-----l~~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 249 (418)
++|+.. +.+. +...+..|+....|.+||+. .+++..++.+.+. .++.... ..++++
T Consensus 327 ~~t~~~-l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~-------------~~~~~~~~~~~~~s~~ 392 (509)
T PRK05022 327 AATNRD-LREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLE-------------QNRARLGLRSLRLSPA 392 (509)
T ss_pred EecCCC-HHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHH-------------HHHHHcCCCCCCCCHH
Confidence 888763 2332 44556667766678999997 5677777766653 1221110 123444
Q ss_pred hHHHHHHHHhccccCHHHHHHHHHHHhhcccccC----CCCChhhHH
Q 014789 250 RFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLES----GFLSFENFK 292 (418)
Q Consensus 250 ~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~----~~it~~~v~ 292 (418)
++..+.. +...||+|.+.+++.+|+..+..+. ..|+.+|+.
T Consensus 393 a~~~L~~--y~WPGNvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~ 437 (509)
T PRK05022 393 AQAALLA--YDWPGNVRELEHVISRAALLARARGAGRIVTLEAQHLD 437 (509)
T ss_pred HHHHHHh--CCCCCcHHHHHHHHHHHHHhcCCCccCccceecHHHcC
Confidence 3333333 4457999999999999877654221 146666643
No 180
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.3e-09 Score=102.65 Aligned_cols=153 Identities=15% Similarity=0.178 Sum_probs=103.7
Q ss_pred hhhhHHHHHHHHHHHHhcCC---------CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHH
Q 014789 33 PDSNYSKLKFLVSSSVTEAC---------NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFK 103 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~---------~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~ 103 (418)
-++-.+.|.+-|..+++++. .+..|||||||||||+++.+++..|. +.++.++-....+... ++
T Consensus 206 d~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~------ydIydLeLt~v~~n~d-Lr 278 (457)
T KOG0743|consen 206 DPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN------YDIYDLELTEVKLDSD-LR 278 (457)
T ss_pred ChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC------CceEEeeeccccCcHH-HH
Confidence 34455666666666666643 57799999999999999999999886 4455555444333322 44
Q ss_pred HHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----c-----h--------hHHHHH
Q 014789 104 EIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----K-----Q--------RLLYSL 165 (418)
Q Consensus 104 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----~-----~--------~~L~~l 165 (418)
.++... ....||+|.+||.-... . + +-|.+.
T Consensus 279 ~LL~~t-------------------------------~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNf 327 (457)
T KOG0743|consen 279 HLLLAT-------------------------------PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNF 327 (457)
T ss_pred HHHHhC-------------------------------CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhh
Confidence 444322 24579999999977541 1 1 123444
Q ss_pred HhhhccC-CCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhcCCCC
Q 014789 166 LDAMQSV-TSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILSLPVD 227 (418)
Q Consensus 166 ~~~~~~~-~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~~~~~ 227 (418)
+|..-.. ..--++|++||. .++|+|++.+ |+. .+|++.-=+++++..+.+..+.++.+
T Consensus 328 iDGlwSscg~ERIivFTTNh---~EkLDPALlRpGRmD-mhI~mgyCtf~~fK~La~nYL~~~~~ 388 (457)
T KOG0743|consen 328 LDGLWSSCGDERIIVFTTNH---KEKLDPALLRPGRMD-MHIYMGYCTFEAFKTLASNYLGIEED 388 (457)
T ss_pred hccccccCCCceEEEEecCC---hhhcCHhhcCCCcce-eEEEcCCCCHHHHHHHHHHhcCCCCC
Confidence 4433222 124478889987 7899999988 665 57899999999999999999986543
No 181
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=7e-10 Score=103.00 Aligned_cols=161 Identities=14% Similarity=0.162 Sum_probs=104.4
Q ss_pred HHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh-cccc--
Q 014789 43 LVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-LLFS-- 118 (418)
Q Consensus 43 ~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-~~~~-- 118 (418)
.+...+..+. ++.++++||.|+||++++..+++.+....+.. -.|..+. ..+.+....+++.. +.+.
T Consensus 14 ~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~-----~~Cg~C~----sC~~~~~g~HPD~~~i~p~~~ 84 (319)
T PRK06090 14 NWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS-----EACGFCH----SCELMQSGNHPDLHVIKPEKE 84 (319)
T ss_pred HHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC-----CCCCCCH----HHHHHHcCCCCCEEEEecCcC
Confidence 3444444444 77889999999999999999999887543210 1232221 11112111111110 0111
Q ss_pred -cCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhc
Q 014789 119 -KMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRS 197 (418)
Q Consensus 119 -~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~s 197 (418)
+..+.++. +.+.+.+......++..|+|||++|.|....++.|...++.| +.+..+|.+|+. ++.+.|.++|
T Consensus 85 ~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP---p~~t~fiL~t~~---~~~lLpTI~S 157 (319)
T PRK06090 85 GKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEP---APNCLFLLVTHN---QKRLLPTIVS 157 (319)
T ss_pred CCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCC---CCCeEEEEEECC---hhhChHHHHh
Confidence 11233333 345555555555667899999999999876666666665554 477888988877 6788999999
Q ss_pred ccCceEEEecCCCHHHHHHHHHHH
Q 014789 198 RFSHRKLLFLPPSKEDMQRLLEHI 221 (418)
Q Consensus 198 r~~~~~i~~~~~~~~e~~~il~~~ 221 (418)
|+ +.+.|+|++.+++.+.+...
T Consensus 158 RC--q~~~~~~~~~~~~~~~L~~~ 179 (319)
T PRK06090 158 RC--QQWVVTPPSTAQAMQWLKGQ 179 (319)
T ss_pred cc--eeEeCCCCCHHHHHHHHHHc
Confidence 99 67999999999999988764
No 182
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.16 E-value=1.4e-09 Score=108.05 Aligned_cols=237 Identities=13% Similarity=0.126 Sum_probs=142.7
Q ss_pred CCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHH
Q 014789 23 NFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAF 102 (418)
Q Consensus 23 ~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~ 102 (418)
.+.+ +.++|.+..+..+.+.+...... ..+++|+|++||||+++++.+-..-.... -.++.+||...... .+
T Consensus 208 ~~~f-~~iiG~S~~m~~~~~~i~~~A~~--~~pVLI~GE~GTGKe~lA~~IH~~S~r~~---~pfv~inC~~l~e~--ll 279 (526)
T TIGR02329 208 RYRL-DDLLGASAPMEQVRALVRLYARS--DATVLILGESGTGKELVAQAIHQLSGRRD---FPFVAINCGAIAES--LL 279 (526)
T ss_pred ccch-hheeeCCHHHHHHHHHHHHHhCC--CCcEEEECCCCcCHHHHHHHHHHhcCcCC---CCEEEeccccCChh--HH
Confidence 3444 45899999999999998886543 56899999999999999998876443222 45688999876531 22
Q ss_pred HHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCC
Q 014789 103 KEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTS 174 (418)
Q Consensus 103 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~ 174 (418)
. +.+.......+.+... .... ..+.. .....|+|||++.|....|..|..+++.... ...
T Consensus 280 e---seLFG~~~gaftga~~--~~~~---Gl~e~----A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~ 347 (526)
T TIGR02329 280 E---AELFGYEEGAFTGARR--GGRT---GLIEA----AHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPV 347 (526)
T ss_pred H---HHhcCCcccccccccc--cccc---cchhh----cCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeee
Confidence 1 2221111000110000 0000 01111 1345799999999998888888777754321 123
Q ss_pred cEEEEEeccCCChHH-----HHHHHhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhC
Q 014789 175 QAVVIGVSCRLDADQ-----LLEKRVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILA 247 (418)
Q Consensus 175 ~~~lI~~s~~~~~~~-----~l~~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (418)
++-+|++|+. ++.+ .+.+.+..|++.-.|.+||+. .+++..++.+.+. .++......++
T Consensus 348 dvRiIaat~~-~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~-------------~~~~~~~~~~~ 413 (526)
T TIGR02329 348 DVRVVAATHC-ALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLV-------------QAAAALRLPDS 413 (526)
T ss_pred cceEEeccCC-CHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHH-------------HHHHHcCCCCC
Confidence 4567887766 3233 344456667776679999997 5678777777664 11111100133
Q ss_pred ChhHHH------HHHHHhccccCHHHHHHHHHHHhhcccc-cCCCCChhhHHHH
Q 014789 248 DGRFKE------IVNTLVNLDSTVNHLLRFLFLAVSYMDL-ESGFLSFENFKTA 294 (418)
Q Consensus 248 ~~~~~~------~~~~~~~~~gd~r~~~~~l~~a~~~a~~-~~~~it~~~v~~a 294 (418)
++++.. .+. .+...||+|.+.+++.+++..+.. ....|+.+++...
T Consensus 414 ~~a~~~~~~~~~~L~-~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 414 EAAAQVLAGVADPLQ-RYPWPGNVRELRNLVERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred HHHHHHhHHHHHHHH-hCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhhhh
Confidence 332221 122 245689999999999998765432 3457888886543
No 183
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.1e-09 Score=105.51 Aligned_cols=142 Identities=20% Similarity=0.249 Sum_probs=95.8
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh-HHHHHHHHHHHHHhhhcccccCCChHhHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD-CCAFKEIARQLCMEHQLLFSKMASFDDNSQFM 130 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 130 (418)
..++++|+||+|+|||.+++++++.+.... -..+.+++|...... ..-++..+... +
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~--~~hv~~v~Cs~l~~~~~e~iQk~l~~v--------------------f 487 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDL--IAHVEIVSCSTLDGSSLEKIQKFLNNV--------------------F 487 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhcccc--ceEEEEEechhccchhHHHHHHHHHHH--------------------H
Confidence 467899999999999999999999988543 366678889775432 11222222221 1
Q ss_pred HHHHhhcCCCceEEEEEecchhhhhhc-----ch---------hHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhh
Q 014789 131 IEMLRECGLAHKTIIFVLDEFDLFAQG-----KQ---------RLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVR 196 (418)
Q Consensus 131 ~~~l~~~~~~~~~~viilDEid~l~~~-----~~---------~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~ 196 (418)
.+.+ ...|.||+||++|.+... +| ..|+++.......+..+.+|++.+. .+.+.|.+-
T Consensus 488 se~~-----~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe---~qtl~~~L~ 559 (952)
T KOG0735|consen 488 SEAL-----WYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQE---LQTLNPLLV 559 (952)
T ss_pred HHHH-----hhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechh---hhhcChhhc
Confidence 1111 236999999999999872 22 2334444443344567889998876 456667765
Q ss_pred cc-cCceEEEecCCCHHHHHHHHHHHhc
Q 014789 197 SR-FSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 197 sr-~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
|. +-+..+.++++...+..+||+.-..
T Consensus 560 s~~~Fq~~~~L~ap~~~~R~~IL~~~~s 587 (952)
T KOG0735|consen 560 SPLLFQIVIALPAPAVTRRKEILTTIFS 587 (952)
T ss_pred CccceEEEEecCCcchhHHHHHHHHHHH
Confidence 53 2235789999999999999988764
No 184
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.13 E-value=2.4e-09 Score=101.35 Aligned_cols=145 Identities=15% Similarity=0.161 Sum_probs=89.3
Q ss_pred eEEEEEecchhhhhhc------------chhHHHHHHhhhc-------cCCCcEEEEEeccCCC-hHHHHHHHhhcccCc
Q 014789 142 KTIIFVLDEFDLFAQG------------KQRLLYSLLDAMQ-------SVTSQAVVIGVSCRLD-ADQLLEKRVRSRFSH 201 (418)
Q Consensus 142 ~~~viilDEid~l~~~------------~~~~L~~l~~~~~-------~~~~~~~lI~~s~~~~-~~~~l~~~v~sr~~~ 201 (418)
...||+|||||.++.. .|..|..+++-.. -...++.||+...-.. -+..|-|.+..||.
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~P- 327 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFP- 327 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccc-
Confidence 4569999999999864 2333333333211 1235777887655322 13457799999996
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH-----HHhCChhHHHHHHHHhc-----cccCHHHHHHH
Q 014789 202 RKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK-----NILADGRFKEIVNTLVN-----LDSTVNHLLRF 271 (418)
Q Consensus 202 ~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-----~~gd~r~~~~~ 271 (418)
..+.+.|++.+++..||..- ..+.+.+|.+... -.|+++++..+++..+. ..-.+|.+..+
T Consensus 328 i~v~L~~L~~~dL~~ILteP---------~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI 398 (443)
T PRK05201 328 IRVELDALTEEDFVRILTEP---------KASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTV 398 (443)
T ss_pred eEEECCCCCHHHHHHHhcCC---------hhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHH
Confidence 57899999999999998652 1134445544322 23567778887777665 24477887777
Q ss_pred HHHHhhccc---cc----CCCCChhhHHHHHh
Q 014789 272 LFLAVSYMD---LE----SGFLSFENFKTALS 296 (418)
Q Consensus 272 l~~a~~~a~---~~----~~~it~~~v~~a~~ 296 (418)
+...+..+. ++ .-.|+.+.|...+.
T Consensus 399 ~E~~L~d~~Fe~p~~~~~~v~I~~~~V~~~l~ 430 (443)
T PRK05201 399 MEKLLEDISFEAPDMSGETVTIDAAYVDEKLG 430 (443)
T ss_pred HHHHHHHHhccCCCCCCCEEEECHHHHHHHHH
Confidence 776654432 11 12456666655443
No 185
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.13 E-value=1.1e-09 Score=103.34 Aligned_cols=218 Identities=17% Similarity=0.195 Sum_probs=137.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
+.++|-+...+++.+.++.. ...+.+++|+|++||||+.+++.+-. ..... ..-.+|.+||.......... +
T Consensus 78 ~~LIG~~~~~~~~~eqik~~--ap~~~~vLi~GetGtGKel~A~~iH~-~s~r~-~~~PFI~~NCa~~~en~~~~-e--- 149 (403)
T COG1221 78 DDLIGESPSLQELREQIKAY--APSGLPVLIIGETGTGKELFARLIHA-LSARR-AEAPFIAFNCAAYSENLQEA-E--- 149 (403)
T ss_pred hhhhccCHHHHHHHHHHHhh--CCCCCcEEEecCCCccHHHHHHHHHH-hhhcc-cCCCEEEEEHHHhCcCHHHH-H---
Confidence 46889999999999988874 33467899999999999999998873 33321 12457899998876532111 1
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEEE
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVVI 179 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~lI 179 (418)
|.+..++-+.+. ...-..+++. .....+++||++.|....|..|..+++..+. ...++-+|
T Consensus 150 -LFG~~kGaftGa---~~~k~Glfe~-------A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli 218 (403)
T COG1221 150 -LFGHEKGAFTGA---QGGKAGLFEQ-------ANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLI 218 (403)
T ss_pred -Hhccccceeecc---cCCcCchhee-------cCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceee
Confidence 221111111110 0000011111 1456899999999999888888888876332 24578888
Q ss_pred EeccCCChHHHHHH--HhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHh--CC-hhHH
Q 014789 180 GVSCRLDADQLLEK--RVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNIL--AD-GRFK 252 (418)
Q Consensus 180 ~~s~~~~~~~~l~~--~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~ 252 (418)
++|+. +..+.+.. .+..|+....|.+||+. .+++..++++.+. .++......+ .. +++.
T Consensus 219 ~AT~~-~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~-------------~~~~~l~~~~~~~~~~a~~ 284 (403)
T COG1221 219 CATTE-DLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLK-------------SEARRLGLPLSVDSPEALR 284 (403)
T ss_pred ecccc-CHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHH-------------HHHHHcCCCCCCCCHHHHH
Confidence 88877 44666666 66676666679999997 5566666666654 2222211111 11 2222
Q ss_pred HHHHHHhccccCHHHHHHHHHHHhhccc
Q 014789 253 EIVNTLVNLDSTVNHLLRFLFLAVSYMD 280 (418)
Q Consensus 253 ~~~~~~~~~~gd~r~~~~~l~~a~~~a~ 280 (418)
.++. +...||+|.+.+++.+++..+.
T Consensus 285 ~L~~--y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 285 ALLA--YDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred HHHh--CCCCCcHHHHHHHHHHHHHHhc
Confidence 2222 4458999999999999887764
No 186
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.12 E-value=3.5e-09 Score=100.21 Aligned_cols=147 Identities=17% Similarity=0.191 Sum_probs=92.3
Q ss_pred eEEEEEecchhhhhhc------------chhHHHHHHhhhc-------cCCCcEEEEEeccCCCh-HHHHHHHhhcccCc
Q 014789 142 KTIIFVLDEFDLFAQG------------KQRLLYSLLDAMQ-------SVTSQAVVIGVSCRLDA-DQLLEKRVRSRFSH 201 (418)
Q Consensus 142 ~~~viilDEid~l~~~------------~~~~L~~l~~~~~-------~~~~~~~lI~~s~~~~~-~~~l~~~v~sr~~~ 201 (418)
...||+|||||.+..+ .|..|..+++-.. -...++.+|+...-... +..|-|.+..||.
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~P- 325 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFP- 325 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccc-
Confidence 4679999999999863 2344444443211 12357778876653321 4457899999996
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH-----HHhCChhHHHHHHHHhc-----cccCHHHHHHH
Q 014789 202 RKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK-----NILADGRFKEIVNTLVN-----LDSTVNHLLRF 271 (418)
Q Consensus 202 ~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-----~~gd~r~~~~~ 271 (418)
..+.+.|++.+++..||..-- .+.+++|.+..+ -.|+++++..+++..+. ..-.+|.+..+
T Consensus 326 i~v~L~~L~~edL~rILteP~---------nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~Lrti 396 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPK---------NSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTV 396 (441)
T ss_pred eEEECCCCCHHHHHHHhcCCh---------hHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHH
Confidence 578999999999999986531 134455544333 13567778888877665 24477887777
Q ss_pred HHHHhhccc---c----cCCCCChhhHHHHHhcc
Q 014789 272 LFLAVSYMD---L----ESGFLSFENFKTALSNS 298 (418)
Q Consensus 272 l~~a~~~a~---~----~~~~it~~~v~~a~~~~ 298 (418)
+...+..+. . ..-.|+.+.|...+..+
T Consensus 397 lE~~l~d~~fe~p~~~~~~v~I~~~~V~~~l~~~ 430 (441)
T TIGR00390 397 LERLLEDISFEAPDLSGQNITIDADYVSKKLGAL 430 (441)
T ss_pred HHHHHHHHHhcCCCCCCCEEEECHHHHHhHHHHH
Confidence 776654432 1 12246666666555443
No 187
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.2e-10 Score=102.08 Aligned_cols=150 Identities=19% Similarity=0.290 Sum_probs=90.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcC---------CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEA---------CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~---------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.+-|--.++.++.+.+.--+.++ .|..++||||||+|||.+++.++..+..+. +.+.+....+.
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf------l~v~ss~lv~k 205 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNF------LKVVSSALVDK 205 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCce------EEeeHhhhhhh
Confidence 456677777777777665444332 367889999999999999999999987543 33332222111
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--------chh---HHHHHHh
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--------KQR---LLYSLLD 167 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--------~~~---~L~~l~~ 167 (418)
+ + +... ..|.++++.. ....|++|++||+|....+ ++. -|.+|++
T Consensus 206 y---------i-----------GEsa---RlIRemf~yA-~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLln 261 (388)
T KOG0651|consen 206 Y---------I-----------GESA---RLIRDMFRYA-REVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLN 261 (388)
T ss_pred h---------c-----------ccHH---HHHHHHHHHH-hhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHH
Confidence 0 0 0111 1122222221 1236899999999988764 333 4444444
Q ss_pred hhcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCH
Q 014789 168 AMQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSK 211 (418)
Q Consensus 168 ~~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~ 211 (418)
.... .-.++-+|.++|+.+ .|+|.+.+ |+. +.+..|-++.
T Consensus 262 qmdgfd~l~rVk~ImatNrpd---tLdpaLlRpGRld-rk~~iPlpne 305 (388)
T KOG0651|consen 262 QMDGFDTLHRVKTIMATNRPD---TLDPALLRPGRLD-RKVEIPLPNE 305 (388)
T ss_pred hhccchhcccccEEEecCCcc---ccchhhcCCcccc-ceeccCCcch
Confidence 3332 235788999999954 56677654 554 4566665543
No 188
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.11 E-value=2.5e-09 Score=111.12 Aligned_cols=216 Identities=15% Similarity=0.167 Sum_probs=132.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
+.++|++..+..+.+.+..... ...+++|+|++|||||++++.+........ ..++.+||...... .+..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~--~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~---~~~v~i~c~~~~~~--~~~~--- 445 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ--SDSTVLILGETGTGKELIARAIHNLSGRNN---RRMVKMNCAAMPAG--LLES--- 445 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC--CCCCEEEECCCCcCHHHHHHHHHHhcCCCC---CCeEEEecccCChh--Hhhh---
Confidence 3689999999999999888654 356899999999999999998876544322 45788999865421 2221
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEEE
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVVI 179 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~lI 179 (418)
.+.......+.+. .... ...+... ...+|+|||++.+....|..|..+++.... ...++-+|
T Consensus 446 ~lfg~~~~~~~g~--~~~~----~g~le~a----~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI 515 (686)
T PRK15429 446 DLFGHERGAFTGA--SAQR----IGRFELA----DKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLI 515 (686)
T ss_pred hhcCccccccccc--ccch----hhHHHhc----CCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEE
Confidence 1111100001000 0000 1112211 246899999999988878777777754321 12467788
Q ss_pred EeccCCChHHH-----HHHHhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH---HhCCh
Q 014789 180 GVSCRLDADQL-----LEKRVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKN---ILADG 249 (418)
Q Consensus 180 ~~s~~~~~~~~-----l~~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 249 (418)
++|+. ++.+. +...+..|++...|.+||+. .+++..++.+.+. .++..... .++++
T Consensus 516 ~~t~~-~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~-------------~~~~~~~~~~~~~s~~ 581 (686)
T PRK15429 516 AATNR-DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTF-------------KIARRMGRNIDSIPAE 581 (686)
T ss_pred EeCCC-CHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHH-------------HHHHHcCCCCCCcCHH
Confidence 88866 33332 33445567766678999997 5677777776653 22221110 13444
Q ss_pred hHHHHHHHHhccccCHHHHHHHHHHHhhcc
Q 014789 250 RFKEIVNTLVNLDSTVNHLLRFLFLAVSYM 279 (418)
Q Consensus 250 ~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a 279 (418)
++..+.. +...||+|.+.+++.+++..+
T Consensus 582 al~~L~~--y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 582 TLRTLSN--MEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHHHHh--CCCCCcHHHHHHHHHHHHHhC
Confidence 3333332 456899999999999987653
No 189
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.09 E-value=3.3e-09 Score=98.01 Aligned_cols=110 Identities=13% Similarity=0.162 Sum_probs=60.4
Q ss_pred ceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCCh---------HHHHHHHhhcccCceEEEecCCCH
Q 014789 141 HKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDA---------DQLLEKRVRSRFSHRKLLFLPPSK 211 (418)
Q Consensus 141 ~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~---------~~~l~~~v~sr~~~~~i~~~~~~~ 211 (418)
=-|-|+||||+|.|.-..-..|. +..+..-+|+ +|.+||+-.. +--+...+.+|+ -.|...||+.
T Consensus 277 lvpGVLFIDEvHmLDiEcFsfLn---ralEs~~sPi-iIlATNRg~~~irGt~~~sphGiP~DlLDRl--lII~t~py~~ 350 (398)
T PF06068_consen 277 LVPGVLFIDEVHMLDIECFSFLN---RALESELSPI-IILATNRGITKIRGTDIISPHGIPLDLLDRL--LIIRTKPYSE 350 (398)
T ss_dssp EEE-EEEEESGGGSBHHHHHHHH---HHHTSTT--E-EEEEES-SEEE-BTTS-EEETT--HHHHTTE--EEEEE----H
T ss_pred EecceEEecchhhccHHHHHHHH---HHhcCCCCcE-EEEecCceeeeccCccCcCCCCCCcchHhhc--EEEECCCCCH
Confidence 35899999999999664444444 4444444554 5666664211 112333456677 4688999999
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHH
Q 014789 212 EDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLA 275 (418)
Q Consensus 212 ~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a 275 (418)
+|+.+|++-|... +++ -++++ ....+.+++ ...++|++++++..|
T Consensus 351 ~ei~~Il~iR~~~---E~v--------------~i~~~-al~~L~~ig-~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 351 EEIKQILKIRAKE---EDV--------------EISED-ALDLLTKIG-VETSLRYAIQLITPA 395 (398)
T ss_dssp HHHHHHHHHHHHH---CT----------------B-HH-HHHHHHHHH-HHS-HHHHHHCHHHH
T ss_pred HHHHHHHHhhhhh---hcC--------------cCCHH-HHHHHHHHh-hhccHHHHHHhhhhh
Confidence 9999999999751 111 12333 344444443 356899999888654
No 190
>PRK08116 hypothetical protein; Validated
Probab=99.08 E-value=2.3e-09 Score=98.05 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHhcC-CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhc
Q 014789 37 YSKLKFLVSSSVTEA-CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQL 115 (418)
Q Consensus 37 ~~~l~~~l~~~~~~~-~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~ 115 (418)
+.....++....... .+.+++|+|++|||||+++.++++.+.... ..+++++. ..++..+.......
T Consensus 97 ~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~---~~v~~~~~------~~ll~~i~~~~~~~--- 164 (268)
T PRK08116 97 YKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKG---VPVIFVNF------PQLLNRIKSTYKSS--- 164 (268)
T ss_pred HHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEH------HHHHHHHHHHHhcc---
Confidence 444555555443222 245699999999999999999999987653 45566652 22333333322110
Q ss_pred ccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhh--hhhcchhHHHHHHhhhccCCCcEEEEEeccCC--ChHHHH
Q 014789 116 LFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDL--FAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRL--DADQLL 191 (418)
Q Consensus 116 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~--l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~--~~~~~l 191 (418)
+ ......+.+.+.. .-+|||||+.. .....+..|+.+++....... .+|.+||.. ++.+.+
T Consensus 165 ------~-~~~~~~~~~~l~~------~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~--~~IiTsN~~~~eL~~~~ 229 (268)
T PRK08116 165 ------G-KEDENEIIRSLVN------ADLLILDDLGAERDTEWAREKVYNIIDSRYRKGL--PTIVTTNLSLEELKNQY 229 (268)
T ss_pred ------c-cccHHHHHHHhcC------CCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCC--CEEEECCCCHHHHHHHH
Confidence 0 0111223333332 34899999953 333367788898887543323 366677654 233456
Q ss_pred HHHhhcccCc--eEEEecCCCHHHHHHHHHHH
Q 014789 192 EKRVRSRFSH--RKLLFLPPSKEDMQRLLEHI 221 (418)
Q Consensus 192 ~~~v~sr~~~--~~i~~~~~~~~e~~~il~~~ 221 (418)
+.++.||+.. ..+.|...+ -...+.+.+
T Consensus 230 ~~ri~sRl~e~~~~v~~~g~d--~R~~~~~ek 259 (268)
T PRK08116 230 GKRIYDRILEMCTPVENEGKS--YRKEIAKEK 259 (268)
T ss_pred hHHHHHHHHHcCEEEEeeCcC--hhHHHHHHH
Confidence 7889998642 346665544 234444444
No 191
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.08 E-value=1.5e-09 Score=100.23 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=98.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIE 132 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 132 (418)
+.+++|.|+||||||++++.+++.+... ++.++|....++.+++..-.-.+. .+....+..+..+.
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~------~~rV~~~~~l~~~DliG~~~~~l~--------~g~~~~~f~~GpL~ 129 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWP------CVRVNLDSHVSRIDLVGKDAIVLK--------DGKQITEFRDGILP 129 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCC------eEEEEecCCCChhhcCCCceeecc--------CCcceeEEecCcch
Confidence 5689999999999999999999998743 478888887766444432111010 00000000000000
Q ss_pred HHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhh------cc-----CCCcEEEEEeccCCC-------hH--HHHH
Q 014789 133 MLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAM------QS-----VTSQAVVIGVSCRLD-------AD--QLLE 192 (418)
Q Consensus 133 ~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~------~~-----~~~~~~lI~~s~~~~-------~~--~~l~ 192 (418)
.. ...+.++++||+|...+..+..|..+++.. .. ...++.+|++.|+.+ +. ..+.
T Consensus 130 ~A-----~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~ 204 (327)
T TIGR01650 130 WA-----LQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQIN 204 (327)
T ss_pred hH-----HhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCC
Confidence 00 124678999999999887788888887631 11 223688999999865 22 3567
Q ss_pred HHhhcccCceEEEecCCCHHHHHHHHHHHh
Q 014789 193 KRVRSRFSHRKLLFLPPSKEDMQRLLEHIL 222 (418)
Q Consensus 193 ~~v~sr~~~~~i~~~~~~~~e~~~il~~~l 222 (418)
....+||. ..+.+..++.++-.+|+..+.
T Consensus 205 ~A~lDRF~-i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 205 QAQMDRWS-IVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred HHHHhhee-eEeeCCCCCHHHHHHHHHhhc
Confidence 88899995 245688888888889988764
No 192
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.07 E-value=2.8e-09 Score=105.48 Aligned_cols=219 Identities=14% Similarity=0.196 Sum_probs=118.0
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEE-EccccCCChH---HHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIK-LNGLLHSDDC---CAFK 103 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~-in~~~~~~~~---~~~~ 103 (418)
.+.-..+.+++|..+|...+.+.. ...++|+||+||||||+++.+++++.-. +.. .|........ .-+.
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~------v~Ew~np~~~~~~~~~~~d~~ 93 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFE------VQEWINPVSFRESDNQEDDFE 93 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCe------eEEecCCCCcccccccccccc
Confidence 356667888999999998766554 4567789999999999999999998633 222 2222211000 0000
Q ss_pred HHHHHHHHhhhcccccCCChHhHHHHHHHH-Hhhc----------CCCceEEEEEecchhhhhhcchhHHHHHH-hhhcc
Q 014789 104 EIARQLCMEHQLLFSKMASFDDNSQFMIEM-LREC----------GLAHKTIIFVLDEFDLFAQGKQRLLYSLL-DAMQS 171 (418)
Q Consensus 104 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~-l~~~----------~~~~~~~viilDEid~l~~~~~~~L~~l~-~~~~~ 171 (418)
..... ...+....+.+.+. +... .......||+|||+-.........+..++ .+...
T Consensus 94 s~~~~-----------~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~ 162 (519)
T PF03215_consen 94 SDFNK-----------FDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRS 162 (519)
T ss_pred ccccc-----------cccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHc
Confidence 00000 00000000111111 0000 11246789999999887665444444444 33444
Q ss_pred CCC-cEEEEEecc-----CCC-------hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHH
Q 014789 172 VTS-QAVVIGVSC-----RLD-------ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEF 238 (418)
Q Consensus 172 ~~~-~~~lI~~s~-----~~~-------~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~ 238 (418)
... |+++|.+-. ... ....+.+.+........|.|-|.+..-+.+.|...+.....
T Consensus 163 ~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~----------- 231 (519)
T PF03215_consen 163 SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEAR----------- 231 (519)
T ss_pred CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhh-----------
Confidence 445 887777711 111 11244566766666578999999988888777776541100
Q ss_pred HHHHHHHhCChhHHHHHHHHhc-cccCHHHHHHHHHHHhh
Q 014789 239 NKKIKNILADGRFKEIVNTLVN-LDSTVNHLLRFLFLAVS 277 (418)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~-~~gd~r~~~~~l~~a~~ 277 (418)
...+...-+.-..++..++. ..||+|.|++.+.-...
T Consensus 232 --~~~~~~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 232 --SSSGKNKVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred --hhcCCccCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 00000000111222333333 35999999998875443
No 193
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.07 E-value=1.2e-10 Score=96.05 Aligned_cols=122 Identities=22% Similarity=0.227 Sum_probs=73.8
Q ss_pred eEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEML 134 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 134 (418)
+++|+||||||||++++.+++.+. ..+..++|....+..+++...--+ .... .+..+. ...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~------~~~~~i~~~~~~~~~dl~g~~~~~-~~~~--~~~~~~-l~~--------- 61 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLG------RPVIRINCSSDTTEEDLIGSYDPS-NGQF--EFKDGP-LVR--------- 61 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHT------CEEEEEE-TTTSTHHHHHCEEET--TTTT--CEEE-C-CCT---------
T ss_pred CEEEECCCCCCHHHHHHHHHHHhh------cceEEEEeccccccccceeeeeec-cccc--cccccc-ccc---------
Confidence 589999999999999999999984 445777887777765544321111 0000 000000 000
Q ss_pred hhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc----------CCC------cEEEEEeccCCC-hHHHHHHHhhc
Q 014789 135 RECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS----------VTS------QAVVIGVSCRLD-ADQLLEKRVRS 197 (418)
Q Consensus 135 ~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~----------~~~------~~~lI~~s~~~~-~~~~l~~~v~s 197 (418)
....+.+++|||++.....-+..|..+++.... ... ++.+|+++|+.+ -...+.+++++
T Consensus 62 ----a~~~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~ 137 (139)
T PF07728_consen 62 ----AMRKGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD 137 (139)
T ss_dssp ----THHEEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT
T ss_pred ----cccceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh
Confidence 012689999999999876666666666643221 111 389999999976 22367888888
Q ss_pred cc
Q 014789 198 RF 199 (418)
Q Consensus 198 r~ 199 (418)
||
T Consensus 138 Rf 139 (139)
T PF07728_consen 138 RF 139 (139)
T ss_dssp T-
T ss_pred hC
Confidence 86
No 194
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.07 E-value=3.2e-09 Score=107.65 Aligned_cols=138 Identities=14% Similarity=0.158 Sum_probs=86.2
Q ss_pred EEEEEecchhhhhhcchhHHHHHHhhhc------------------cCCCcEEEEEeccCCChHHHHHHHhhcccCc--e
Q 014789 143 TIIFVLDEFDLFAQGKQRLLYSLLDAMQ------------------SVTSQAVVIGVSCRLDADQLLEKRVRSRFSH--R 202 (418)
Q Consensus 143 ~~viilDEid~l~~~~~~~L~~l~~~~~------------------~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~--~ 202 (418)
.-+|+|||++.|....|..|...++..+ ..+.++.+|+++|.. ....+++.+.+||.. -
T Consensus 218 gGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~-~l~~l~~~l~~rf~~y~v 296 (608)
T TIGR00764 218 KGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLD-DLEGMHPALRSRIRGYGY 296 (608)
T ss_pred CCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHH-HHhhcCHHHHHHhcCCeE
Confidence 4789999999998777777777664321 113467889999874 345678999999961 2
Q ss_pred EEEec---CCCHHHHHHHHH---HHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhc-------cccCHHHHH
Q 014789 203 KLLFL---PPSKEDMQRLLE---HILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVN-------LDSTVNHLL 269 (418)
Q Consensus 203 ~i~~~---~~~~~e~~~il~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~gd~r~~~ 269 (418)
.+.|. |.+.+...++.. ..+.-. .. ...++++++..+++.... .+.+.|.+-
T Consensus 297 ~v~~~~~~~~~~e~~~~~~~~i~~~~~r~--G~-------------l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~ 361 (608)
T TIGR00764 297 EVYMKDTMPDTPENRDKLVQFVAQEVKKD--GR-------------IPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELG 361 (608)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHHHHHHh--CC-------------CCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHH
Confidence 34553 334444444433 322100 00 013455556555543322 244689999
Q ss_pred HHHHHHhhccc-ccCCCCChhhHHHHHh
Q 014789 270 RFLFLAVSYMD-LESGFLSFENFKTALS 296 (418)
Q Consensus 270 ~~l~~a~~~a~-~~~~~it~~~v~~a~~ 296 (418)
++++.|...|. .++..|+.+||.+|++
T Consensus 362 ~llR~A~~iA~~~~~~~I~~ehV~~Ai~ 389 (608)
T TIGR00764 362 GLVRAAGDIAKSSGKVYVTAEHVLKAKK 389 (608)
T ss_pred HHHHHHHHHHHhcCCceecHHHHHHHHH
Confidence 99999866664 3677899999998865
No 195
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.06 E-value=4.9e-09 Score=103.48 Aligned_cols=148 Identities=14% Similarity=0.062 Sum_probs=93.1
Q ss_pred eEEEEEecchhhhhhcchhHHHHHHhhhcc----------CCCcEEEEEeccCCC--------------------hHHHH
Q 014789 142 KTIIFVLDEFDLFAQGKQRLLYSLLDAMQS----------VTSQAVVIGVSCRLD--------------------ADQLL 191 (418)
Q Consensus 142 ~~~viilDEid~l~~~~~~~L~~l~~~~~~----------~~~~~~lI~~s~~~~--------------------~~~~l 191 (418)
...+++|||++.+....++.|+..++.... ...++.+|+++|+.. +..++
T Consensus 295 ~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~i 374 (499)
T TIGR00368 295 HNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKL 374 (499)
T ss_pred CCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhc
Confidence 356999999999988888888887754321 135789999999752 12356
Q ss_pred HHHhhcccCceEEEecCCCHHHHH-------------HHH------HHHhcC----CCCCCCChHHHHHHHHHHHHHhCC
Q 014789 192 EKRVRSRFSHRKLLFLPPSKEDMQ-------------RLL------EHILSL----PVDSSLPHAYAVEFNKKIKNILAD 248 (418)
Q Consensus 192 ~~~v~sr~~~~~i~~~~~~~~e~~-------------~il------~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~ 248 (418)
...+.+||.. .+.+++++.+++. .+. ..|..- ..+..++...++.|. . -+
T Consensus 375 s~pllDR~dl-~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~-----~-l~ 447 (499)
T TIGR00368 375 SGPFLDRIDL-SVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFC-----K-LS 447 (499)
T ss_pred cHhHHhhCCE-EEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhc-----C-CC
Confidence 7788899973 5778877655431 111 112210 012223333333321 1 12
Q ss_pred hhHHHHHHHHhcc-ccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHh
Q 014789 249 GRFKEIVNTLVNL-DSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALS 296 (418)
Q Consensus 249 ~~~~~~~~~~~~~-~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~ 296 (418)
+.....+...+.. .=+.|....+++.|...|+ .+++.|+.+||.+|+.
T Consensus 448 ~~~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 448 AIDANDLEGALNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 3344555555443 2377888888888877776 4888999999999874
No 196
>PF05729 NACHT: NACHT domain
Probab=99.06 E-value=8.2e-09 Score=87.58 Aligned_cols=153 Identities=23% Similarity=0.298 Sum_probs=85.4
Q ss_pred eEEEECCCCCchHHHHHHHHHHHhhhCCCC---eEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILTDLLLEYPDT---ISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~~~~~~~---~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 131 (418)
.++|+|+||+|||++++.++..+....... ..++++++......... ..+.+.+..... .......+ .+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~---~~~~~~~~---~~~ 74 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNS-RSLADLLFDQLP---ESIAPIEE---LLQ 74 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhcccc-chHHHHHHHhhc---cchhhhHH---HHH
Confidence 578999999999999999999988766332 23445555443332111 222222221110 00011111 122
Q ss_pred HHHhhcCCCceEEEEEecchhhhhhcchh-----HHHHHHhhhcc-CCCcEEEEEeccCCChHHHHHHHhhcccCc-eEE
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQGKQR-----LLYSLLDAMQS-VTSQAVVIGVSCRLDADQLLEKRVRSRFSH-RKL 204 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~~~~~-----~L~~l~~~~~~-~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~-~~i 204 (418)
..+. ....++|+||.+|.+....+. ....+.++... ...++.++.++++....+ +...+.. ..+
T Consensus 75 ~~~~----~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~-----~~~~~~~~~~~ 145 (166)
T PF05729_consen 75 ELLE----KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPD-----LRRRLKQAQIL 145 (166)
T ss_pred HHHH----cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHH-----HHHhcCCCcEE
Confidence 2222 236889999999999875322 22222233322 223455666665544322 2233321 468
Q ss_pred EecCCCHHHHHHHHHHHhc
Q 014789 205 LFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 205 ~~~~~~~~e~~~il~~~l~ 223 (418)
.+.|++.+++.++++..+.
T Consensus 146 ~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 146 ELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred EECCCCHHHHHHHHHHHhh
Confidence 9999999999999988764
No 197
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=3.4e-09 Score=99.32 Aligned_cols=168 Identities=17% Similarity=0.151 Sum_probs=103.5
Q ss_pred hhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHh
Q 014789 33 PDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCME 112 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~ 112 (418)
.+...+++... .+.-+++++++||+|+|||++++.+++.+....+..- ...|..+. ..+.+....+.+
T Consensus 6 ~~~~w~~l~~~-----~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~---~~~Cg~C~----~C~~~~~~~HpD 73 (325)
T PRK08699 6 HQEQWRQIAEH-----WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPG---HKPCGECM----SCHLFGQGSHPD 73 (325)
T ss_pred cHHHHHHHHHh-----cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCC---CCCCCcCH----HHHHHhcCCCCC
Confidence 34444554443 3445778999999999999999999998875432100 00122111 111111111110
Q ss_pred hh-cccc----------cCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEe
Q 014789 113 HQ-LLFS----------KMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGV 181 (418)
Q Consensus 113 ~~-~~~~----------~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~ 181 (418)
.. ..+. ...+.++ .+.+.+.+......++..|+++|+++.+....++.|..+++.+. ....+|.+
T Consensus 74 ~~~~~p~~~~~~~g~~~~~I~id~-iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~---~~~~~Ilv 149 (325)
T PRK08699 74 FYEITPLSDEPENGRKLLQIKIDA-VREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP---PQVVFLLV 149 (325)
T ss_pred EEEEecccccccccccCCCcCHHH-HHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc---CCCEEEEE
Confidence 00 0000 0112333 23345555544445678888999999998887777777777653 34667778
Q ss_pred ccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHH
Q 014789 182 SCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHI 221 (418)
Q Consensus 182 s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~ 221 (418)
|+. .+.+.+.+.||+ +.+.|+|++.+++.+.|..+
T Consensus 150 th~---~~~ll~ti~SRc--~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 150 SHA---ADKVLPTIKSRC--RKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred eCC---hHhChHHHHHHh--hhhcCCCCCHHHHHHHHHhc
Confidence 766 557778999999 67999999999999888764
No 198
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.05 E-value=1.5e-09 Score=104.39 Aligned_cols=227 Identities=18% Similarity=0.204 Sum_probs=142.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
..++|++..++++.+.+..... ...+++|+|++||||-.+++.+-+.-.+.. -.+|.+||...... .+. +
T Consensus 141 ~~liG~S~am~~l~~~i~kvA~--s~a~VLI~GESGtGKElvAr~IH~~S~R~~---~PFVavNcaAip~~--l~E---S 210 (464)
T COG2204 141 GELVGESPAMQQLRRLIAKVAP--SDASVLITGESGTGKELVARAIHQASPRAK---GPFIAVNCAAIPEN--LLE---S 210 (464)
T ss_pred CCceecCHHHHHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHHhhCcccC---CCceeeecccCCHH--HHH---H
Confidence 5799999999999999988754 456899999999999999997765444332 34688999776532 221 2
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEEE
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVVI 179 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~lI 179 (418)
.|.+..+.-|++... .=...+.. ...-.|+||||..|.-.-|.-|...+...+. .+.++-||
T Consensus 211 ELFGhekGAFTGA~~------~r~G~fE~----A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiI 280 (464)
T COG2204 211 ELFGHEKGAFTGAIT------RRIGRFEQ----ANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRII 280 (464)
T ss_pred HhhcccccCcCCccc------ccCcceeE----cCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEE
Confidence 232221111211110 00011111 2467899999999988777766666654331 23477889
Q ss_pred EeccCCChHHH-----HHHHhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH---HHHhCCh
Q 014789 180 GVSCRLDADQL-----LEKRVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKI---KNILADG 249 (418)
Q Consensus 180 ~~s~~~~~~~~-----l~~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 249 (418)
++||. ++.+. +...+..|+..-.|++||+. .+++--++.+.+. .++... ...++++
T Consensus 281 aaT~~-dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~-------------~~~~~~~~~~~~~s~~ 346 (464)
T COG2204 281 AATNR-DLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLK-------------RFAAELGRPPKGFSPE 346 (464)
T ss_pred eecCc-CHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHH-------------HHHHHcCCCCCCCCHH
Confidence 99887 54443 34556678876678889986 6777777777664 111111 0123344
Q ss_pred hHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHH
Q 014789 250 RFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFK 292 (418)
Q Consensus 250 ~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~ 292 (418)
++..+.. +...||+|.+.+++.+++-.++ .+.|+.+++-
T Consensus 347 a~~~L~~--y~WPGNVREL~N~ver~~il~~--~~~i~~~~l~ 385 (464)
T COG2204 347 ALAALLA--YDWPGNVRELENVVERAVILSE--GPEIEVEDLP 385 (464)
T ss_pred HHHHHHh--CCCChHHHHHHHHHHHHHhcCC--ccccchhhcc
Confidence 3333333 4567999999999999876643 3346655543
No 199
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.04 E-value=5.6e-09 Score=103.80 Aligned_cols=235 Identities=13% Similarity=0.118 Sum_probs=137.8
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhh-----hCCCCeEEEEEccccCCChHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLL-----EYPDTISVIKLNGLLHSDDCCAF 102 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~-----~~~~~~~~v~in~~~~~~~~~~~ 102 (418)
+.++|.+..++.+.+.+..... ...+++|+|++||||+++++.+-..+.. ....+-.++.+||...... .+
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~--s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~--ll 294 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYAR--SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAES--LL 294 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhC--CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChh--hH
Confidence 4589999999999999887654 3568999999999999999998775210 0011245788999876531 22
Q ss_pred HHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCC
Q 014789 103 KEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTS 174 (418)
Q Consensus 103 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~ 174 (418)
. +.|.......+.+... .....+ +.. .....|+|||++.|....|..|..+++.... .+.
T Consensus 295 e---seLFG~~~gaftga~~--~~~~Gl---~e~----A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~ 362 (538)
T PRK15424 295 E---AELFGYEEGAFTGSRR--GGRAGL---FEI----AHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPV 362 (538)
T ss_pred H---HHhcCCccccccCccc--cccCCc---hhc----cCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceecc
Confidence 1 1221111000100000 000001 111 1345799999999998878878777754321 124
Q ss_pred cEEEEEeccCCChHHH-----HHHHhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhC
Q 014789 175 QAVVIGVSCRLDADQL-----LEKRVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILA 247 (418)
Q Consensus 175 ~~~lI~~s~~~~~~~~-----l~~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (418)
++-+|++|+. ++... +.+.+..|++.-.|.+||+. .+++..++.+.+. .++......++
T Consensus 363 dvRiIaat~~-~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~-------------~~~~~~~~~~~ 428 (538)
T PRK15424 363 DVRVISATHC-DLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLK-------------QSLAALSAPFS 428 (538)
T ss_pred ceEEEEecCC-CHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHH-------------HHHHHcCCCCC
Confidence 5678888876 33332 34456677776678999997 5678777777664 11110000122
Q ss_pred ChhHH---HHHHH--HhccccCHHHHHHHHHHHhhcccc-cCCCCChhhHH
Q 014789 248 DGRFK---EIVNT--LVNLDSTVNHLLRFLFLAVSYMDL-ESGFLSFENFK 292 (418)
Q Consensus 248 ~~~~~---~~~~~--~~~~~gd~r~~~~~l~~a~~~a~~-~~~~it~~~v~ 292 (418)
++++. ..+.. .+...||+|.+.+++.+++..+.. ....++.+++.
T Consensus 429 ~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 429 AALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 22111 11111 244679999999999997765432 23467766653
No 200
>PRK12377 putative replication protein; Provisional
Probab=99.04 E-value=3e-09 Score=95.55 Aligned_cols=142 Identities=22% Similarity=0.192 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhc
Q 014789 36 NYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQL 115 (418)
Q Consensus 36 e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~ 115 (418)
.+.....+...... ...+++|+||||||||+++.++++.+.... ..+++++.. .++..+-.....
T Consensus 86 a~~~a~~~a~~~~~--~~~~l~l~G~~GtGKThLa~AIa~~l~~~g---~~v~~i~~~------~l~~~l~~~~~~---- 150 (248)
T PRK12377 86 ALSQAKSIADELMT--GCTNFVFSGKPGTGKNHLAAAIGNRLLAKG---RSVIVVTVP------DVMSRLHESYDN---- 150 (248)
T ss_pred HHHHHHHHHHHHHh--cCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CCeEEEEHH------HHHHHHHHHHhc----
Confidence 44555555555432 346899999999999999999999988654 334555421 233333222110
Q ss_pred ccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhh--hcchhHHHHHHhhhccCCCcEEEEEeccCC--ChHHHH
Q 014789 116 LFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFA--QGKQRLLYSLLDAMQSVTSQAVVIGVSCRL--DADQLL 191 (418)
Q Consensus 116 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~--~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~--~~~~~l 191 (418)
..+ ...+.+.+. ..-+|||||+.... ...++.|+.+++.......+ .|.+||.. ++.+.+
T Consensus 151 ----~~~----~~~~l~~l~------~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~p--tiitSNl~~~~l~~~~ 214 (248)
T PRK12377 151 ----GQS----GEKFLQELC------KVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRS--VGMLTNLNHEAMSTLL 214 (248)
T ss_pred ----cch----HHHHHHHhc------CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCC--EEEEcCCCHHHHHHHh
Confidence 001 112333333 45699999995543 33778999999876543333 45567753 334567
Q ss_pred HHHhhcccCc---eEEEecC
Q 014789 192 EKRVRSRFSH---RKLLFLP 208 (418)
Q Consensus 192 ~~~v~sr~~~---~~i~~~~ 208 (418)
.+++.||+.. ..|.|.-
T Consensus 215 ~~ri~dRl~~~~~~~v~~~g 234 (248)
T PRK12377 215 GERVMDRMTMNGGRWVNFNW 234 (248)
T ss_pred hHHHHHHHhhCCCeEEEeCC
Confidence 7788888852 3366654
No 201
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.03 E-value=3.2e-09 Score=109.67 Aligned_cols=227 Identities=14% Similarity=0.159 Sum_probs=141.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
+.++|.+..+..+.+.+..+... ..+++|+|++||||+++++.+........ -.++.+||...... .+-.+++-
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~--~~pvli~Ge~GtGK~~~A~~ih~~s~r~~---~pfv~vnc~~~~~~-~~~~elfg 398 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKS--SFPVLLCGEEGVGKALLAQAIHNESERAA---GPYIAVNCQLYPDE-ALAEEFLG 398 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCc--CCCEEEECCCCcCHHHHHHHHHHhCCccC---CCeEEEECCCCChH-HHHHHhcC
Confidence 46889999999999998887653 55799999999999999998876544322 34688899876531 11112211
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccC--------CCcEEEE
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSV--------TSQAVVI 179 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~--------~~~~~lI 179 (418)
.. . +..... -...+. .....+|+|||++.|....|..|..+++..... +.++-+|
T Consensus 399 ~~---~------~~~~~~----~~g~~~----~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI 461 (638)
T PRK11388 399 SD---R------TDSENG----RLSKFE----LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVI 461 (638)
T ss_pred CC---C------cCccCC----CCCcee----ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEE
Confidence 10 0 000000 000011 113567999999999988888888877543211 1256788
Q ss_pred EeccCCChHH-----HHHHHhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH--HHhCChh
Q 014789 180 GVSCRLDADQ-----LLEKRVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK--NILADGR 250 (418)
Q Consensus 180 ~~s~~~~~~~-----~l~~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 250 (418)
++|+. ++.+ .+.+.+..|++...|.+||+. .+++..++.+.+. .++.... -.+++++
T Consensus 462 ~~t~~-~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~-------------~~~~~~~~~~~~s~~a 527 (638)
T PRK11388 462 ATTTA-DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLR-------------SLEKRFSTRLKIDDDA 527 (638)
T ss_pred EeccC-CHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHH-------------HHHHHhCCCCCcCHHH
Confidence 88776 3333 234456667776678999997 4678777777664 2221110 0234443
Q ss_pred HHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHH
Q 014789 251 FKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTAL 295 (418)
Q Consensus 251 ~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~ 295 (418)
+..+.. +...||+|.+.+++..++..+ ....|+.+|+-..+
T Consensus 528 ~~~L~~--y~WPGNvreL~~~l~~~~~~~--~~~~i~~~~lp~~~ 568 (638)
T PRK11388 528 LARLVS--YRWPGNDFELRSVIENLALSS--DNGRIRLSDLPEHL 568 (638)
T ss_pred HHHHHc--CCCCChHHHHHHHHHHHHHhC--CCCeecHHHCchhh
Confidence 333333 345799999999999987653 34468887775544
No 202
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.03 E-value=3.3e-09 Score=106.08 Aligned_cols=243 Identities=15% Similarity=0.158 Sum_probs=143.1
Q ss_pred CCCChhhhHHHHHHHHHHHHhc--------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTE--------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCC 100 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~--------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~ 100 (418)
.+.|.+.....+.-.+-..... ...-+++|+|+||||||++++.+.+..... .++.+...... .
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~-------~~~~~~~~~~~-~ 275 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA-------VYTTGKGSSAV-G 275 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc-------eEcCCCCCCcC-C
Confidence 6788887655554443222100 012389999999999999999988865321 23322111100 0
Q ss_pred HHHHHHHH-HHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhc---------
Q 014789 101 AFKEIARQ-LCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ--------- 170 (418)
Q Consensus 101 ~~~~i~~~-l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~--------- 170 (418)
+....... .+.. .....| .+. .....+++|||++.+....|..|...++...
T Consensus 276 l~~~~~~~~~~g~--~~~~~G------------~l~----~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~ 337 (509)
T smart00350 276 LTAAVTRDPETRE--FTLEGG------------ALV----LADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGIT 337 (509)
T ss_pred ccccceEccCcce--EEecCc------------cEE----ecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEE
Confidence 00000000 0000 000000 000 1134589999999998888888888765422
Q ss_pred -cCCCcEEEEEeccCCCh--------HH--HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCC----------CCC
Q 014789 171 -SVTSQAVVIGVSCRLDA--------DQ--LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPV----------DSS 229 (418)
Q Consensus 171 -~~~~~~~lI~~s~~~~~--------~~--~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~----------~~~ 229 (418)
..+.++.+|+++|+..- .+ .|.+.+.|||..-.+...+++.+.-.+|+++.+.... +..
T Consensus 338 ~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~ 417 (509)
T smart00350 338 TTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVP 417 (509)
T ss_pred EEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCcccccccccc
Confidence 12367899999998631 11 4678899999755555677787777777777553210 113
Q ss_pred CChHHHHHHHHHHHH----HhCChhHHHHHHHHhcc--------------ccCHHHHHHHHHHHhhccc-ccCCCCChhh
Q 014789 230 LPHAYAVEFNKKIKN----ILADGRFKEIVNTLVNL--------------DSTVNHLLRFLFLAVSYMD-LESGFLSFEN 290 (418)
Q Consensus 230 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--------------~gd~r~~~~~l~~a~~~a~-~~~~~it~~~ 290 (418)
++.+.+..|-...+. .++ +++.+.+...+.. .-.+|.+..+++.|-+.|. ..+..|+.+|
T Consensus 418 ~~~~~l~~yi~~ar~~~~P~ls-~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~D 496 (509)
T smart00350 418 ISQEFLRKYIAYAREKIKPKLS-EEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEAD 496 (509)
T ss_pred CCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHH
Confidence 466777777666665 233 4445555444321 1268888888888777765 3788999999
Q ss_pred HHHHHhcc
Q 014789 291 FKTALSNS 298 (418)
Q Consensus 291 v~~a~~~~ 298 (418)
|..|+.-+
T Consensus 497 v~~ai~l~ 504 (509)
T smart00350 497 VEEAIRLL 504 (509)
T ss_pred HHHHHHHH
Confidence 99998654
No 203
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.02 E-value=3.8e-09 Score=101.22 Aligned_cols=169 Identities=17% Similarity=0.234 Sum_probs=94.8
Q ss_pred CCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhC-CCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 30 SDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEY-PDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~-~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
+...+..++.+...+. ...+++++||||||||++++.++..+.... ...+.++.+. ...+ +..+...
T Consensus 177 ~~i~e~~le~l~~~L~------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFH--psyS----YeDFI~G 244 (459)
T PRK11331 177 LFIPETTIETILKRLT------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFH--QSYS----YEDFIQG 244 (459)
T ss_pred ccCCHHHHHHHHHHHh------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeec--cccc----HHHHhcc
Confidence 4556666666655543 356899999999999999999998876432 1112222222 1111 1222211
Q ss_pred HHHhhhcccccCCChH---hHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-chhHHHHHHhhh---------------
Q 014789 109 LCMEHQLLFSKMASFD---DNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-KQRLLYSLLDAM--------------- 169 (418)
Q Consensus 109 l~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-~~~~L~~l~~~~--------------- 169 (418)
.. + .+.++. ..+..+...... ....+.++||||++..... -...+..+++..
T Consensus 245 ~r------P-~~vgy~~~~G~f~~~~~~A~~--~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~ 315 (459)
T PRK11331 245 YR------P-NGVGFRRKDGIFYNFCQQAKE--QPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSEN 315 (459)
T ss_pred cC------C-CCCCeEecCchHHHHHHHHHh--cccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccc
Confidence 10 1 111111 011111111111 1236899999999877543 123333443311
Q ss_pred ----ccCCCcEEEEEeccCCChH-HHHHHHhhcccCceEEEecC-CCHHHHHHHHHHH
Q 014789 170 ----QSVTSQAVVIGVSCRLDAD-QLLEKRVRSRFSHRKLLFLP-PSKEDMQRLLEHI 221 (418)
Q Consensus 170 ----~~~~~~~~lI~~s~~~~~~-~~l~~~v~sr~~~~~i~~~~-~~~~e~~~il~~~ 221 (418)
-..+.++.+||+.|..+-. ..++.++++|| ..|.+.| ++...+.+.+..+
T Consensus 316 d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF--~fi~i~p~~~~~~~~~~l~~~ 371 (459)
T PRK11331 316 DEERFYVPENVYIIGLMNTADRSLAVVDYALRRRF--SFIDIEPGFDTPQFRNFLLNK 371 (459)
T ss_pred ccccccCCCCeEEEEecCccccchhhccHHHHhhh--heEEecCCCChHHHHHHHHhc
Confidence 0134689999999998732 36799999999 4577766 6666666665443
No 204
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.02 E-value=1.6e-08 Score=94.88 Aligned_cols=201 Identities=14% Similarity=0.094 Sum_probs=117.3
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
..+|.+.--..| .-......-..++|.|++|+||||++++++.-|..... +.=..++|..... .. ....+.+
T Consensus 18 aivGqd~lk~aL----~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~--V~gc~f~cdP~~P-~~-~c~~c~~ 89 (423)
T COG1239 18 AIVGQDPLKLAL----GLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEV--VIGCPFNCDPDDP-EE-MCDECRA 89 (423)
T ss_pred hhcCchHHHHHH----hhhhcccccceeEEecCCCccHHHHHHHHHHhCCccce--ecCCCCCCCCCCh-hh-hhHHHHh
Confidence 345655443332 22234455678999999999999999999998876431 1112233433221 11 2222222
Q ss_pred HHHhhhc--------c---cccCCChHhHHH--HHHHHHhhcC--------CCceEEEEEecchhhhhhcchhHHHHHHh
Q 014789 109 LCMEHQL--------L---FSKMASFDDNSQ--FMIEMLRECG--------LAHKTIIFVLDEFDLFAQGKQRLLYSLLD 167 (418)
Q Consensus 109 l~~~~~~--------~---~~~~~~~~~~~~--~l~~~l~~~~--------~~~~~~viilDEid~l~~~~~~~L~~l~~ 167 (418)
-..+... + .+-+.+.+...- .+...++... .+.+.-|+.+||+..|...-+++|.+.+.
T Consensus 90 k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aa 169 (423)
T COG1239 90 KGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAA 169 (423)
T ss_pred hccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHH
Confidence 2110000 0 000111110000 0111122110 13356799999999998877777777765
Q ss_pred hhc----------cCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEe-cCCCHHHHHHHHHHHhcCCCCCCCChHHHH
Q 014789 168 AMQ----------SVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLF-LPPSKEDMQRLLEHILSLPVDSSLPHAYAV 236 (418)
Q Consensus 168 ~~~----------~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~-~~~~~~e~~~il~~~l~~~~~~~~~~~~~~ 236 (418)
..- ..+.++++||+.|+. ...|.+.++.||+.. +.. .|.+.++..+|+.+++.+. ..++.|++
T Consensus 170 eG~n~vereGisi~hpa~fvligTmNPE--eGeLrpqLlDRfg~~-v~~~~~~~~~~rv~Ii~r~~~f~---~~Pe~f~~ 243 (423)
T COG1239 170 EGVNDVEREGISIRHPARFLLIGTMNPE--EGELRPQLLDRFGLE-VDTHYPLDLEERVEIIRRRLAFE---AVPEAFLE 243 (423)
T ss_pred hCCceeeeCceeeccCccEEEEeecCcc--ccccchhhHhhhcce-eeccCCCCHHHHHHHHHHHHHhh---cCcHHHHH
Confidence 421 134789999999985 457889999999843 444 5667899999999998752 44677888
Q ss_pred HHHHHHH
Q 014789 237 EFNKKIK 243 (418)
Q Consensus 237 ~~~~~~~ 243 (418)
.|+....
T Consensus 244 ~~~~~~~ 250 (423)
T COG1239 244 KYADAQR 250 (423)
T ss_pred HHHHHHH
Confidence 8876544
No 205
>PRK06835 DNA replication protein DnaC; Validated
Probab=99.00 E-value=8.1e-09 Score=96.72 Aligned_cols=128 Identities=18% Similarity=0.214 Sum_probs=78.2
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIE 132 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 132 (418)
..+++|+||+|+|||+++.++++.+.... ..+++++... ++..+...- +.. . .+. ....+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g---~~V~y~t~~~------l~~~l~~~~-------~~~--~-~~~-~~~~~ 242 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRG---KSVIYRTADE------LIEILREIR-------FNN--D-KEL-EEVYD 242 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCC---CeEEEEEHHH------HHHHHHHHH-------hcc--c-hhH-HHHHH
Confidence 47899999999999999999999987654 5667776422 222222210 000 0 011 11133
Q ss_pred HHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccCCCcEEEEEeccCC--ChHHHHHHHhhcccCc--eEEEe
Q 014789 133 MLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVTSQAVVIGVSCRL--DADQLLEKRVRSRFSH--RKLLF 206 (418)
Q Consensus 133 ~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~~~~~lI~~s~~~--~~~~~l~~~v~sr~~~--~~i~~ 206 (418)
.+.. .-+|||||+...... .++.|+.+++.......+ +|.+||.. ++.+.+.+++.||+.. ..+.|
T Consensus 243 ~l~~------~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~--tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~ 314 (329)
T PRK06835 243 LLIN------CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKK--MIISTNLSLEELLKTYSERISSRLLGNFTLLKF 314 (329)
T ss_pred Hhcc------CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCC--EEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEe
Confidence 3433 348999999766443 567888888776543333 55566643 3344567889999863 34555
Q ss_pred cC
Q 014789 207 LP 208 (418)
Q Consensus 207 ~~ 208 (418)
..
T Consensus 315 ~G 316 (329)
T PRK06835 315 YG 316 (329)
T ss_pred cC
Confidence 44
No 206
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.99 E-value=1.9e-08 Score=99.42 Aligned_cols=136 Identities=21% Similarity=0.301 Sum_probs=85.3
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 131 (418)
....++|+||||.||||+++.++++.. +.++.+|+....+...+-..|...+....
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG------YsVvEINASDeRt~~~v~~kI~~avq~~s------------------ 380 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG------YSVVEINASDERTAPMVKEKIENAVQNHS------------------ 380 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC------ceEEEecccccccHHHHHHHHHHHHhhcc------------------
Confidence 356788999999999999999998754 88999999888876544444443332211
Q ss_pred HHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhc--c--CCC--------------cEEEEEeccCCChHHHHHH
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ--S--VTS--------------QAVVIGVSCRLDADQLLEK 193 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~--~--~~~--------------~~~lI~~s~~~~~~~~l~~ 193 (418)
. .+..++|..+||||||--....-+++..++..-. . .+. .--||||+|+.- .-.|.+
T Consensus 381 -~---l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY-aPaLR~ 455 (877)
T KOG1969|consen 381 -V---LDADSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY-APALRP 455 (877)
T ss_pred -c---cccCCCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc-chhhhh
Confidence 0 1123589999999999765444456666665211 0 000 113788998853 222221
Q ss_pred HhhcccCceEEEecCCCHHHHHHHHH
Q 014789 194 RVRSRFSHRKLLFLPPSKEDMQRLLE 219 (418)
Q Consensus 194 ~v~sr~~~~~i~~~~~~~~e~~~il~ 219 (418)
+ ..+ ...|.|.|++.+-+.+-|+
T Consensus 456 -L-r~~-A~ii~f~~p~~s~Lv~RL~ 478 (877)
T KOG1969|consen 456 -L-RPF-AEIIAFVPPSQSRLVERLN 478 (877)
T ss_pred -c-ccc-eEEEEecCCChhHHHHHHH
Confidence 1 222 2578999998777664433
No 207
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.99 E-value=1.6e-08 Score=95.91 Aligned_cols=166 Identities=17% Similarity=0.204 Sum_probs=106.1
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++|+++.+..+...+ . .+.+++|.||||+|||++++.+++.+.. .++.++|.....+.+++....-.
T Consensus 25 ~~~g~~~~~~~~l~a~---~---~~~~vll~G~PG~gKT~la~~lA~~l~~------~~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 25 VVVGDEEVIELALLAL---L---AGGHVLLEGPPGVGKTLLARALARALGL------PFVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred eeeccHHHHHHHHHHH---H---cCCCEEEECCCCccHHHHHHHHHHHhCC------CeEEEecCCCCCHHHhcCchhHh
Confidence 3667777666554443 1 3568999999999999999999999873 35888998888876666543322
Q ss_pred HHH--hhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc---------CCCcEE
Q 014789 109 LCM--EHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS---------VTSQAV 177 (418)
Q Consensus 109 l~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~---------~~~~~~ 177 (418)
... .....+..+.-+.. ...++++|||+...+..|..|+..++..+. ...++.
T Consensus 93 ~~~~~~~~~~~~~gpl~~~----------------~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~ 156 (329)
T COG0714 93 ALLLEPGEFRFVPGPLFAA----------------VRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFI 156 (329)
T ss_pred hhhccCCeEEEecCCcccc----------------cceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCE
Confidence 211 00000111111100 015999999999998888899888865321 235788
Q ss_pred EEEeccCCChH--HHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 178 VIGVSCRLDAD--QLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 178 lI~~s~~~~~~--~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
+|+++|+.+.. ..+.....+||. -.+.+..+..++...++..+..
T Consensus 157 viaT~Np~e~~g~~~l~eA~ldRf~-~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 157 VIATQNPGEYEGTYPLPEALLDRFL-LRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EEEccCccccCCCcCCCHHHHhhEE-EEEecCCCCchHHHHHHHHhCc
Confidence 89998965533 245778888985 3456666645555555555443
No 208
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.99 E-value=9.4e-10 Score=90.48 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=84.5
Q ss_pred CChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHH
Q 014789 31 DSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLC 110 (418)
Q Consensus 31 ~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~ 110 (418)
+|.+..++.+.+.+..... ...+++|+|++||||+++++.+...-.... -.++.++|.... .+++.
T Consensus 1 vG~S~~~~~l~~~l~~~a~--~~~pvli~GE~GtGK~~~A~~lh~~~~~~~---~~~~~~~~~~~~------~~~l~--- 66 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK--SSSPVLITGEPGTGKSLLARALHRYSGRAN---GPFIVIDCASLP------AELLE--- 66 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC--SSS-EEEECCTTSSHHHHHHCCHHTTTTCC---S-CCCCCHHCTC------HHHHH---
T ss_pred CCCCHHHHHHHHHHHHHhC--CCCcEEEEcCCCCCHHHHHHHHHhhcCccC---CCeEEechhhCc------HHHHH---
Confidence 4788889999999988754 466899999999999999997766443322 122334444322 11111
Q ss_pred HhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccC--CChH
Q 014789 111 MEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCR--LDAD 188 (418)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~--~~~~ 188 (418)
.. ....++|+|+|.+....|..|..+++..+. .++-+|++++. ....
T Consensus 67 -------------------------~a----~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~--~~~RlI~ss~~~l~~l~ 115 (138)
T PF14532_consen 67 -------------------------QA----KGGTLYLKNIDRLSPEAQRRLLDLLKRQER--SNVRLIASSSQDLEELV 115 (138)
T ss_dssp -------------------------HC----TTSEEEEECGCCS-HHHHHHHHHHHHHCTT--TTSEEEEEECC-CCCHH
T ss_pred -------------------------Hc----CCCEEEECChHHCCHHHHHHHHHHHHhcCC--CCeEEEEEeCCCHHHHh
Confidence 11 234789999999999888888887765432 33445555443 2322
Q ss_pred H--HHHHHhhcccCceEEEecCC
Q 014789 189 Q--LLEKRVRSRFSHRKLLFLPP 209 (418)
Q Consensus 189 ~--~l~~~v~sr~~~~~i~~~~~ 209 (418)
+ .+.+.+..+++...|.+||+
T Consensus 116 ~~~~~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 116 EEGRFSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp HHSTHHHHHHHHCSTCEEEE---
T ss_pred hccchhHHHHHHhCCCEEeCCCC
Confidence 2 57888889998878999885
No 209
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.98 E-value=3.4e-09 Score=107.33 Aligned_cols=229 Identities=13% Similarity=0.040 Sum_probs=128.2
Q ss_pred HHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHH--HHHHHHhhhcccccCCChH
Q 014789 47 SVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEI--ARQLCMEHQLLFSKMASFD 124 (418)
Q Consensus 47 ~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i--~~~l~~~~~~~~~~~~~~~ 124 (418)
...++.-++++|.|+||||||++++.+.+.+.... .++.+++. .++..++..+ ...+.... ..+..|
T Consensus 10 ~av~p~~g~vLl~G~~GtgKs~lar~l~~~~~~~~----pfv~i~~~--~t~d~L~G~idl~~~~~~g~-~~~~~G---- 78 (589)
T TIGR02031 10 LAVDPSLGGVAIRARAGTGKTALARALAEILPPIM----PFVELPLG--VTEDRLIGGIDVEESLAGGQ-RVTQPG---- 78 (589)
T ss_pred hccCCCcceEEEEcCCCcHHHHHHHHHHHhCCcCC----CeEecCcc--cchhhcccchhhhhhhhcCc-ccCCCC----
Confidence 33445577999999999999999999988765421 23444431 1222222211 11110000 000000
Q ss_pred hHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhc----------cCCCcEEEEEeccCCChHHHHHHH
Q 014789 125 DNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ----------SVTSQAVVIGVSCRLDADQLLEKR 194 (418)
Q Consensus 125 ~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~----------~~~~~~~lI~~s~~~~~~~~l~~~ 194 (418)
.+. ....-+++|||++.+....|..|...++... ....++.+|+++|..+....|.+.
T Consensus 79 --------~L~----~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~ 146 (589)
T TIGR02031 79 --------LLD----EAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDH 146 (589)
T ss_pred --------Cee----eCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHH
Confidence 000 1134589999999999988888888775432 013578899998886433467788
Q ss_pred hhcccCceEEEe-cCCCHHHHHHHHHHHhcCC-C----CCCCChHHHHHHHHHHHHHhCChhHH-HHHHHHhcccc-CHH
Q 014789 195 VRSRFSHRKLLF-LPPSKEDMQRLLEHILSLP-V----DSSLPHAYAVEFNKKIKNILADGRFK-EIVNTLVNLDS-TVN 266 (418)
Q Consensus 195 v~sr~~~~~i~~-~~~~~~e~~~il~~~l~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g-d~r 266 (418)
+.+||... +.+ .+.+.++..+|++..+.-. . +..+..+.+.........+.-++.+. .++.......- ..|
T Consensus 147 LldRf~l~-v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~R 225 (589)
T TIGR02031 147 LLDRLALH-VSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHR 225 (589)
T ss_pred HHHhccCe-eecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCcc
Confidence 89999753 333 4445677788888765310 0 00011111111122222222233344 33433333222 478
Q ss_pred HHHHHHHHHhhccc-ccCCCCChhhHHHHHhccC
Q 014789 267 HLLRFLFLAVSYMD-LESGFLSFENFKTALSNSH 299 (418)
Q Consensus 267 ~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~ 299 (418)
..+.+++.|-..|. .+...|+.+||..|..-+.
T Consensus 226 a~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 226 ADLFAVRAAKAHAALHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Confidence 87777777665553 4888999999999876443
No 210
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.97 E-value=8.3e-08 Score=91.03 Aligned_cols=169 Identities=19% Similarity=0.228 Sum_probs=100.3
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH----HHHHHHHHHHHHhhhc-----------
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC----CAFKEIARQLCMEHQL----------- 115 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~----~~~~~i~~~l~~~~~~----------- 115 (418)
..+..+-|+|+-|+|||++++.+.+.+.......+.++++|+..+.... .++.++..++....+.
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 97 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLEKHFGSKKIKLYAKKKL 97 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHHHhcCccchhHHHhhhh
Confidence 3577788999999999999999999998874445889999998877633 3444555555322100
Q ss_pred ---------c--cccCCC----------------------------------------hHhHHHHHHHHHhhcCCCceEE
Q 014789 116 ---------L--FSKMAS----------------------------------------FDDNSQFMIEMLRECGLAHKTI 144 (418)
Q Consensus 116 ---------~--~~~~~~----------------------------------------~~~~~~~l~~~l~~~~~~~~~~ 144 (418)
. ...... ..+....+.+.+. ....++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~i 174 (325)
T PF07693_consen 98 KSLKIKFKIKINLSKAIPLALIGLPALILAVAIAKLKAELKNAFKSLEEKFLKKLKKEVEELISKIKKKLK---ESKKRI 174 (325)
T ss_pred hhhhceeeeeeecceeehHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhHHHHHHHHHHHHhhh---cCCceE
Confidence 0 000000 0001112222222 246899
Q ss_pred EEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHH------------hhcccCceEEEecCCCHH
Q 014789 145 IFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKR------------VRSRFSHRKLLFLPPSKE 212 (418)
Q Consensus 145 viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~------------v~sr~~~~~i~~~~~~~~ 212 (418)
||+|||+|.+.+.....+...++..-.. .++++|.+.+..-+...+... ...++-+..+.+|+++..
T Consensus 175 ViiIDdLDR~~~~~i~~~l~~ik~~~~~-~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~~~~~ 253 (325)
T PF07693_consen 175 VIIIDDLDRCSPEEIVELLEAIKLLLDF-PNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPPPSPS 253 (325)
T ss_pred EEEEcchhcCCcHHHHHHHHHHHHhcCC-CCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCCCCHH
Confidence 9999999999775322222323322222 567777766543222223222 123343456888999999
Q ss_pred HHHHHHHHHhc
Q 014789 213 DMQRLLEHILS 223 (418)
Q Consensus 213 e~~~il~~~l~ 223 (418)
++..++...+.
T Consensus 254 ~~~~~~~~~~~ 264 (325)
T PF07693_consen 254 DLERYLNELLE 264 (325)
T ss_pred HHHHHHHHHHH
Confidence 99988888754
No 211
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.95 E-value=1e-08 Score=98.83 Aligned_cols=239 Identities=15% Similarity=0.202 Sum_probs=144.4
Q ss_pred cCCCCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 20 CDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 20 ~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
+...|.+ +.++|.+.++..+....+.... ...+++|.|.+||||..+++.+-+.-.+.. -.+|.+||.....
T Consensus 238 ~~a~y~f-~~Iig~S~~m~~~~~~akr~A~--tdstVLi~GESGTGKElfA~~IH~~S~R~~---~PFIaiNCaAiPe-- 309 (560)
T COG3829 238 LKAKYTF-DDIIGESPAMLRVLELAKRIAK--TDSTVLILGESGTGKELFARAIHNLSPRAN---GPFIAINCAAIPE-- 309 (560)
T ss_pred cccccch-hhhccCCHHHHHHHHHHHhhcC--CCCcEEEecCCCccHHHHHHHHHhcCcccC---CCeEEEecccCCH--
Confidence 4445666 5899999999999988877643 466899999999999999998765544433 4578999977653
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhc--------c
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ--------S 171 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~--------~ 171 (418)
.++. +.|.+....-|++...- --..+++. ...-.||||||-.|...-|.-|...+..-+ .
T Consensus 310 ~LlE---SELFGye~GAFTGA~~~--GK~GlfE~-------A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~ 377 (560)
T COG3829 310 TLLE---SELFGYEKGAFTGASKG--GKPGLFEL-------ANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKP 377 (560)
T ss_pred HHHH---HHHhCcCCccccccccC--CCCcceee-------ccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCc
Confidence 2332 22322111111110000 00001111 135679999999998776666666654322 1
Q ss_pred CCCcEEEEEeccCCChHHHH-----HHHhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH
Q 014789 172 VTSQAVVIGVSCRLDADQLL-----EKRVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKN 244 (418)
Q Consensus 172 ~~~~~~lI~~s~~~~~~~~l-----~~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 244 (418)
.+..+-+|++||.. +.+.+ ...+.-|+.--.|++||+. .+++..+..+.+. .+...|+..++
T Consensus 378 ~~vDVRIIAATN~n-L~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~---------k~s~~~~~~v~- 446 (560)
T COG3829 378 IPVDVRIIAATNRN-LEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLD---------KFSRRYGRNVK- 446 (560)
T ss_pred eeeEEEEEeccCcC-HHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHH---------HHHHHcCCCcc-
Confidence 24578899999984 34433 3344556654457788886 6677666666553 11111111111
Q ss_pred HhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHH
Q 014789 245 ILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFK 292 (418)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~ 292 (418)
-++++++..+++ +...|++|.+-+++.+++-.+. ....|+.+|.-
T Consensus 447 ~ls~~a~~~L~~--y~WPGNVRELeNviER~v~~~~-~~~~I~~~~lp 491 (560)
T COG3829 447 GLSPDALALLLR--YDWPGNVRELENVIERAVNLVE-SDGLIDADDLP 491 (560)
T ss_pred cCCHHHHHHHHh--CCCCchHHHHHHHHHHHHhccC-Ccceeehhhcc
Confidence 133444444444 4568999999999999886544 33347777765
No 212
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.95 E-value=1.3e-08 Score=86.22 Aligned_cols=140 Identities=16% Similarity=0.196 Sum_probs=84.1
Q ss_pred CCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHH
Q 014789 30 SDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQL 109 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 109 (418)
++|.+..+.++.+.++..... +.+++|+|++||||+.+++.+-+...... -.++.+||...... .+-..|
T Consensus 1 liG~s~~m~~~~~~~~~~a~~--~~pVlI~GE~GtGK~~lA~~IH~~s~r~~---~pfi~vnc~~~~~~-----~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS--DLPVLITGETGTGKELLARAIHNNSPRKN---GPFISVNCAALPEE-----LLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS--TS-EEEECSTTSSHHHHHHHHHHCSTTTT---S-EEEEETTTS-HH-----HHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC--CCCEEEEcCCCCcHHHHHHHHHHhhhccc---CCeEEEehhhhhcc-----hhhhhh
Confidence 578889999999999887654 47899999999999999998876433322 45789999876432 122333
Q ss_pred HHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEEEEe
Q 014789 110 CMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVVIGV 181 (418)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~lI~~ 181 (418)
-......+...... ...+++ .. ..-+|+|||++.|....|..|..+++.... ...++-+|++
T Consensus 71 FG~~~~~~~~~~~~---~~G~l~---~A----~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~s 140 (168)
T PF00158_consen 71 FGHEKGAFTGARSD---KKGLLE---QA----NGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAS 140 (168)
T ss_dssp HEBCSSSSTTTSSE---BEHHHH---HT----TTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEE
T ss_pred hccccccccccccc---cCCcee---ec----cceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEee
Confidence 22111001100000 001222 21 345899999999999989999888875431 1347888998
Q ss_pred ccCCChHHH
Q 014789 182 SCRLDADQL 190 (418)
Q Consensus 182 s~~~~~~~~ 190 (418)
|+. ++.+.
T Consensus 141 t~~-~l~~~ 148 (168)
T PF00158_consen 141 TSK-DLEEL 148 (168)
T ss_dssp ESS--HHHH
T ss_pred cCc-CHHHH
Confidence 876 43443
No 213
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.5e-08 Score=105.02 Aligned_cols=166 Identities=22% Similarity=0.303 Sum_probs=105.5
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcC---------CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEA---------CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~---------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.+.|.+..+.+|++.+..-+-.+ +++.++++||||||||..+++++........ ++.+..-.+..
T Consensus 265 d~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~-kisffmrkgaD---- 339 (1080)
T KOG0732|consen 265 DSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNR-KISFFMRKGAD---- 339 (1080)
T ss_pred cccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhccccc-ccchhhhcCch----
Confidence 457788888888888765544332 3778999999999999999998877654321 11111111111
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc---ch-----hHHHHHHhhhc
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG---KQ-----RLLYSLLDAMQ 170 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~---~~-----~~L~~l~~~~~ 170 (418)
-++. -.+..+..+..+++..+ +..|.||++||||-|.+. .| ++..+|+-++.
T Consensus 340 ---------~lsk-------wvgEaERqlrllFeeA~----k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmd 399 (1080)
T KOG0732|consen 340 ---------CLSK-------WVGEAERQLRLLFEEAQ----KTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMD 399 (1080)
T ss_pred ---------hhcc-------ccCcHHHHHHHHHHHHh----ccCceEEeccccccccccccchHHHhhhhHHHHHHHhcc
Confidence 1100 00122333344444433 347999999999977764 12 34444444443
Q ss_pred c--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHh
Q 014789 171 S--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHIL 222 (418)
Q Consensus 171 ~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l 222 (418)
. ..+++++||+||+ ++.+++.+++ ||. +.+.|+-++.+...+|+.-+-
T Consensus 400 GldsRgqVvvigATnR---pda~dpaLRRPgrfd-ref~f~lp~~~ar~~Il~Iht 451 (1080)
T KOG0732|consen 400 GLDSRGQVVVIGATNR---PDAIDPALRRPGRFD-REFYFPLPDVDARAKILDIHT 451 (1080)
T ss_pred CCCCCCceEEEcccCC---ccccchhhcCCcccc-eeEeeeCCchHHHHHHHHHhc
Confidence 3 3579999999999 4567777755 665 678898888888888877654
No 214
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=5.7e-08 Score=89.68 Aligned_cols=147 Identities=11% Similarity=0.054 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCC-------CCeEEEEEc--cccCCChHHHHHHHHHHH
Q 014789 40 LKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYP-------DTISVIKLN--GLLHSDDCCAFKEIARQL 109 (418)
Q Consensus 40 l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~-------~~~~~v~in--~~~~~~~~~~~~~i~~~l 109 (418)
+.+.+...+..+. ++..+++|+.|.||+.+++.+++.+.+..+ .+..+..++ +.... .+-++++.+.+
T Consensus 4 ~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~--vd~Ir~l~~~~ 81 (299)
T PRK07132 4 WIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLS--KSEFLSAINKL 81 (299)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCC--HHHHHHHHHHh
Confidence 4566777777766 555559999999999999999999843210 011223333 32111 11223333322
Q ss_pred HHhhhcccccCCChHhHHHHHHHHHhhcC-CCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChH
Q 014789 110 CMEHQLLFSKMASFDDNSQFMIEMLRECG-LAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDAD 188 (418)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~ 188 (418)
. ... ..+..-|+|||++|.+....++.|...++. ++...++|.+++. .
T Consensus 82 ~-------------------------~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE---Pp~~t~~il~~~~---~ 130 (299)
T PRK07132 82 Y-------------------------FSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEE---PPKDTYFLLTTKN---I 130 (299)
T ss_pred c-------------------------cCCcccCCceEEEEecccccCHHHHHHHHHHhhC---CCCCeEEEEEeCC---h
Confidence 1 111 114688999999999976555555555444 4577888888875 4
Q ss_pred HHHHHHhhcccCceEEEecCCCHHHHHHHHHHH
Q 014789 189 QLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHI 221 (418)
Q Consensus 189 ~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~ 221 (418)
+.+.+.++||+ +.+.|.|++.+++.+.+..+
T Consensus 131 ~kll~TI~SRc--~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 131 NKVLPTIVSRC--QVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred HhChHHHHhCe--EEEECCCCCHHHHHHHHHHc
Confidence 78889999999 67999999999999888875
No 215
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.94 E-value=1.4e-08 Score=90.92 Aligned_cols=128 Identities=19% Similarity=0.246 Sum_probs=77.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIE 132 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 132 (418)
..+++|+|+||||||+++.+++..+.... ..+++++. ..++..+-.... . ...+ .+.+.+
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~it~------~~l~~~l~~~~~-~------~~~~----~~~~l~ 158 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRG---KSVLIITV------ADIMSAMKDTFS-N------SETS----EEQLLN 158 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEH------HHHHHHHHHHHh-h------cccc----HHHHHH
Confidence 35899999999999999999999987653 44455532 223322222211 0 0011 122333
Q ss_pred HHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccCCCcEEEEEeccCC--ChHHHHHHHhhcccC---ceEEE
Q 014789 133 MLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVTSQAVVIGVSCRL--DADQLLEKRVRSRFS---HRKLL 205 (418)
Q Consensus 133 ~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~~~~~lI~~s~~~--~~~~~l~~~v~sr~~---~~~i~ 205 (418)
.+.. .-+|||||++..... ...+++.+++...... ...|.+||.. ++.+.+..++.||+. ...+.
T Consensus 159 ~l~~------~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~--~~tiitSNl~~~~l~~~~g~ri~sRl~~~~~~~i~ 230 (244)
T PRK07952 159 DLSN------VDLLVIDEIGVQTESRYEKVIINQIVDRRSSSK--RPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVI 230 (244)
T ss_pred Hhcc------CCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCC--CCEEEeCCCCHHHHHHHhChHHHHHHHHCCceEEE
Confidence 3433 459999999877543 4568999988754322 3455566653 344566778888873 23556
Q ss_pred ecC
Q 014789 206 FLP 208 (418)
Q Consensus 206 ~~~ 208 (418)
|.-
T Consensus 231 f~~ 233 (244)
T PRK07952 231 FNW 233 (244)
T ss_pred eeC
Confidence 653
No 216
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.94 E-value=1.2e-08 Score=101.79 Aligned_cols=228 Identities=15% Similarity=0.136 Sum_probs=138.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
..++|.+..+..+.+.+..... ...+++|+|++|||||++++.+........ -.++.+||...... .+ -.
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~~--~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~---~~~i~i~c~~~~~~--~~---~~ 207 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLSR--SSISVLINGESGTGKELVAHALHRHSPRAK---APFIALNMAAIPKD--LI---ES 207 (469)
T ss_pred ccceecCHHHHHHHHHHHHHhc--cCCeEEEEeCCCCcHHHHHHHHHhcCCCCC---CCeEeeeCCCCCHH--HH---HH
Confidence 3588999999999888877543 466899999999999999988766543222 45688899766321 11 12
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEEE
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVVI 179 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~lI 179 (418)
.+.+.....+.+... .. ...+.. .....++|||+|.+....|..|..+++.... ...++-+|
T Consensus 208 ~lfg~~~g~~~~~~~---~~---~g~~~~----a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii 277 (469)
T PRK10923 208 ELFGHEKGAFTGANT---IR---QGRFEQ----ADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRII 277 (469)
T ss_pred HhcCCCCCCCCCCCc---CC---CCCeeE----CCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEE
Confidence 221111000000000 00 000111 1234689999999998878777777754321 12356778
Q ss_pred EeccCCChHH-----HHHHHhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH-H--HhCCh
Q 014789 180 GVSCRLDADQ-----LLEKRVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK-N--ILADG 249 (418)
Q Consensus 180 ~~s~~~~~~~-----~l~~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~-~--~~~~~ 249 (418)
++|+. ++.+ .+.+.+..|+....|.+||+. .+++..++.+.+. .++.... . .++++
T Consensus 278 ~~~~~-~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~-------------~~~~~~~~~~~~~~~~ 343 (469)
T PRK10923 278 AATHQ-NLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQ-------------VAARELGVEAKLLHPE 343 (469)
T ss_pred EeCCC-CHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHH-------------HHHHHcCCCCCCcCHH
Confidence 87765 3333 244667778876678999997 5678777777664 2222111 0 13444
Q ss_pred hHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHH
Q 014789 250 RFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKT 293 (418)
Q Consensus 250 ~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~ 293 (418)
++..+.. +...||+|.+.+++.+++..+ ....|+.+++-.
T Consensus 344 a~~~L~~--~~wpgNv~eL~~~i~~~~~~~--~~~~i~~~~l~~ 383 (469)
T PRK10923 344 TEAALTR--LAWPGNVRQLENTCRWLTVMA--AGQEVLIQDLPG 383 (469)
T ss_pred HHHHHHh--CCCCChHHHHHHHHHHHHHhC--CCCcccHHHCcH
Confidence 3333333 446899999999999987654 344677777643
No 217
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.94 E-value=2.1e-08 Score=102.81 Aligned_cols=151 Identities=15% Similarity=0.149 Sum_probs=94.3
Q ss_pred EEEEEecchhhhhhcchhHHHHHHhhhc----------cCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCC-CH
Q 014789 143 TIIFVLDEFDLFAQGKQRLLYSLLDAMQ----------SVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPP-SK 211 (418)
Q Consensus 143 ~~viilDEid~l~~~~~~~L~~l~~~~~----------~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~-~~ 211 (418)
..+++|||++.+....|..|..+++... ....++.+|+++|+.+ ..+.+.+.+||. -.+.+++. +.
T Consensus 127 ~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~e--g~l~~~L~dR~~-l~i~v~~~~~~ 203 (633)
T TIGR02442 127 RGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEE--GDLRPQLLDRFG-LCVDVAAPRDP 203 (633)
T ss_pred CCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCC--CCCCHHHHhhcc-eEEEccCCCch
Confidence 3599999999999888888888776431 1235789999988642 346678889997 34555544 45
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHH----------HH----HHhCChhHHHHHHHHhcccc--CHHHHHHHHHHH
Q 014789 212 EDMQRLLEHILSLPVDSSLPHAYAVEFNKK----------IK----NILADGRFKEIVNTLVNLDS--TVNHLLRFLFLA 275 (418)
Q Consensus 212 ~e~~~il~~~l~~~~~~~~~~~~~~~~~~~----------~~----~~~~~~~~~~~~~~~~~~~g--d~r~~~~~l~~a 275 (418)
++..+++..++....+ ...+...|... .+ .+.-++.+...+..++...| ..|..+.+++.|
T Consensus 204 ~~~~~il~~~~~~~~~---~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~A 280 (633)
T TIGR02442 204 EERVEIIRRRLAFDAD---PEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAA 280 (633)
T ss_pred HHHHHHHHHHHhhccC---cHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 7778888876542211 11122222110 00 11123445555555544333 478888888777
Q ss_pred hhccc-ccCCCCChhhHHHHHhccC
Q 014789 276 VSYMD-LESGFLSFENFKTALSNSH 299 (418)
Q Consensus 276 ~~~a~-~~~~~it~~~v~~a~~~~~ 299 (418)
-..|. .+...|+.+||..|..-+.
T Consensus 281 ra~AaL~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 281 RALAALDGRRRVTAEDVREAAELVL 305 (633)
T ss_pred HHHHHHcCCCcCCHHHHHHHHHHHh
Confidence 66654 4888999999999887554
No 218
>cd08768 Cdc6_C Winged-helix domain of essential DNA replication protein Cell division control protein (Cdc6), which mediates DNA binding. This model characterizes the winged-helix, C-terminal domain of the Cell division control protein (Cdc6_C). Cdc6 (also known as Cell division cycle 6 or Cdc18) functions as a regulator at the early stages of DNA replication, by helping to recruit and load the Minichromosome Maintenance Complex (MCM) onto DNA and may have additional roles in the control of mitotic entry. Precise duplication of chromosomal DNA is required for genomic stability during replication. Cdc6 has an essential role in DNA replication and irregular expression of Cdc6 may lead to genomic instability. Cdc6 over-expression is observed in many cancerous lesions. DNA replication begins when an origin recognition complex (ORC) binds to a replication origin site on the chromatin. Studies indicate that Cdc6 interacts with ORC through the Orc1 subunit, and that this association increases
Probab=98.92 E-value=5.2e-09 Score=78.62 Aligned_cols=86 Identities=10% Similarity=0.114 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHhhhhhh-cCCcccHHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhCCcceeecCCCCccccccccE
Q 014789 311 SILELYILVCLKRLEVK-EQNSYNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFEHLLQRELICFTDNRGYSQSVEFRPV 389 (418)
Q Consensus 311 ~~~~~~iL~a~~~l~~~-~~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~g~~~~~~~~~~ 389 (418)
|.|++++|+|++.+... +..++++++||+.|+.+|+..+..+ .+.+.|..++..|..+|+|....++ ++..+.++.|
T Consensus 1 p~~~Kl~L~Al~~~~~~~~~~~~~~~~vy~~Y~~~c~~~~~~~-l~~~~~~~~l~~L~~~gli~~~~~~-~g~~g~~~~~ 78 (87)
T cd08768 1 PLHQKLVLLALLLLFKRGGEEEATTGEVYEVYEELCEEIGVDP-LTQRRISDLLSELEMLGLLETEVSS-KGRRGRTRKI 78 (87)
T ss_pred CchHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHcCCeEEEEec-CCCCceEEEE
Confidence 67999999999988755 3678999999999999999987754 5666778889999999998764432 2334778899
Q ss_pred EEecCHHHH
Q 014789 390 KLLISSIEL 398 (418)
Q Consensus 390 ~l~~~~~~v 398 (418)
.|++++++|
T Consensus 79 ~l~~~~~~v 87 (87)
T cd08768 79 SLNVDPDDV 87 (87)
T ss_pred EecCCcccC
Confidence 999998864
No 219
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.92 E-value=1.2e-07 Score=98.01 Aligned_cols=322 Identities=11% Similarity=0.045 Sum_probs=173.3
Q ss_pred CCCChhhhHHHHHHHHHHHHhc-----------------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEc
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTE-----------------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLN 91 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~-----------------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in 91 (418)
.+.|.+.....|.-.|-..... ....++||.|+||||||.+++.+.+..... ++.+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~-------~yts 523 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRS-------IYTS 523 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCcc-------ccCC
Confidence 6889888877775555333210 112389999999999999999887743321 2333
Q ss_pred cccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhc-
Q 014789 92 GLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ- 170 (418)
Q Consensus 92 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~- 170 (418)
+...... .+. .......... +.+.- + ...+.. ....+++|||++.+....|..|..+++...
T Consensus 524 G~~~s~v-gLT-a~~~~~d~~t-------G~~~l--e--~GaLvl----AdgGtL~IDEidkms~~~Q~aLlEaMEqqtI 586 (915)
T PTZ00111 524 GKSSSSV-GLT-ASIKFNESDN-------GRAMI--Q--PGAVVL----ANGGVCCIDELDKCHNESRLSLYEVMEQQTV 586 (915)
T ss_pred CCCCccc-ccc-chhhhccccc-------Ccccc--c--CCcEEE----cCCCeEEecchhhCCHHHHHHHHHHHhCCEE
Confidence 3221110 000 0000000000 00000 0 000111 123589999999998888888888775432
Q ss_pred ---------cCCCcEEEEEeccCCC--------hHH--HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcC-------
Q 014789 171 ---------SVTSQAVVIGVSCRLD--------ADQ--LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSL------- 224 (418)
Q Consensus 171 ---------~~~~~~~lI~~s~~~~--------~~~--~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~------- 224 (418)
..+.++.||+++|+.. +.+ .|.+.+.|||....+.+.+++.+.=..|..+-+..
T Consensus 587 sI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~ 666 (915)
T PTZ00111 587 TIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMT 666 (915)
T ss_pred EEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHhhcccccc
Confidence 1236889999999852 112 35678999997555556666644333332222210
Q ss_pred -CC------------------------CCCCChHHHHHHHHHHHHHhC---ChhHHHHHHHHhc----------------
Q 014789 225 -PV------------------------DSSLPHAYAVEFNKKIKNILA---DGRFKEIVNTLVN---------------- 260 (418)
Q Consensus 225 -~~------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------------- 260 (418)
.. ...++..++..|-.+.+..+. .+...+.+...|.
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~ 746 (915)
T PTZ00111 667 GSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELE 746 (915)
T ss_pred cccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 00 011356777777666553222 2233333322111
Q ss_pred -------------cc------cCHHHHHHHHHHHhhcccc-cCCCCChhhHHHHHhccCC-------Cc---h--hhhh-
Q 014789 261 -------------LD------STVNHLLRFLFLAVSYMDL-ESGFLSFENFKTALSNSHR-------QP---K--LECI- 307 (418)
Q Consensus 261 -------------~~------gd~r~~~~~l~~a~~~a~~-~~~~it~~~v~~a~~~~~~-------~~---~--~~~l- 307 (418)
.+ -.+|++-.+++.|-+.|.. -++.|+.+||..|+.-+.. ++ . .+.+
T Consensus 747 ~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~sl~~~~~DpetG~iD~d~~~ 826 (915)
T PTZ00111 747 HAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKSSTFQSLVDPTTGKIDFDQLH 826 (915)
T ss_pred ccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHHHHHhhhcccccCCcccceeec
Confidence 01 1488888888876666553 6778999999998764421 11 0 1112
Q ss_pred cCCChHHHHHHHH----Hhhhhhh-----cCCcccHHHHHHHHHHHHhhc-CCCCccChhHHHHHHHHHHhCCccee
Q 014789 308 KDCSILELYILVC----LKRLEVK-----EQNSYNFNSVMKEYKSIHDSF-QTSDYYSRNVCLRAFEHLLQRELICF 374 (418)
Q Consensus 308 ~~L~~~~~~iL~a----~~~l~~~-----~~~~~~~~~v~~~y~~~~~~~-~~~~~~~~~~~~~~~~~L~~~~~i~~ 374 (418)
.+.+..++..+.. +..+... ....+..++|++.+.+-.... ......++..+..+++.|...|.|..
T Consensus 827 ~G~s~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~g~i~~ 903 (915)
T PTZ00111 827 QGITTNKMQQLNQMYEQVLSVLTRSSNQDSNKSLDLNEVLSLCHKTFKDNRDHKDGEIYKLISEVLNKMVQEGTAVR 903 (915)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHhhhccccCCceeHHHHHHHHHhhccccchhccCCCHHHHHHHHHHHHhCCeEee
Confidence 2344434332222 2222211 124688999988874321111 11234677788899999999998764
No 220
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.91 E-value=1.3e-08 Score=83.57 Aligned_cols=119 Identities=20% Similarity=0.186 Sum_probs=68.2
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIE 132 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 132 (418)
+.+++|+||||||||++++.++..+.... ..++++++............ ...... .............+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~ 72 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQLL--LIIVGG----KKASGSGELRLRLALA 72 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHHHHH--hhhhhc----cCCCCCHHHHHHHHHH
Confidence 56899999999999999999999887653 24677777654432111111 000000 0111122223334444
Q ss_pred HHhhcCCCceEEEEEecchhhhhhcchhHHHHH-----HhhhccCCCcEEEEEeccC
Q 014789 133 MLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSL-----LDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 133 ~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l-----~~~~~~~~~~~~lI~~s~~ 184 (418)
..... .+.+|++||++.+........... .........+..+|+++|.
T Consensus 73 ~~~~~----~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 73 LARKL----KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred HHHhc----CCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 44432 368999999999987643332221 1111222356788888884
No 221
>PRK15115 response regulator GlrR; Provisional
Probab=98.91 E-value=7e-08 Score=95.67 Aligned_cols=229 Identities=17% Similarity=0.179 Sum_probs=134.0
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++|....+..+.+.+..... ...+++|+|++|||||++++.+.+...... ..++.+||...... .+.. .
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~--~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~---~~f~~i~c~~~~~~--~~~~---~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQ--SDVSVLINGQSGTGKEILAQAIHNASPRAS---KPFIAINCGALPEQ--LLES---E 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhcc--CCCeEEEEcCCcchHHHHHHHHHHhcCCCC---CCeEEEeCCCCCHH--HHHH---H
Confidence 467777777776666555432 356799999999999999998776543322 45788899776432 2221 1
Q ss_pred HHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEEEE
Q 014789 109 LCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVVIG 180 (418)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~lI~ 180 (418)
+.......+.+... .. ...+.. ....+|+|||+|.|....|..|..+++.... ...++-+|+
T Consensus 205 lfg~~~~~~~~~~~---~~---~g~~~~----a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~ 274 (444)
T PRK15115 205 LFGHARGAFTGAVS---NR---EGLFQA----AEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIIS 274 (444)
T ss_pred hcCCCcCCCCCCcc---CC---CCcEEE----CCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEE
Confidence 11110000000000 00 000111 1245899999999998888888777754321 123667888
Q ss_pred eccCCChHHHH-----HHHhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH---HhCChh
Q 014789 181 VSCRLDADQLL-----EKRVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKN---ILADGR 250 (418)
Q Consensus 181 ~s~~~~~~~~l-----~~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 250 (418)
+|+. +....+ .+.+..|+....|.+||+. .+++..++.+.+. .++..... .+++++
T Consensus 275 ~~~~-~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~-------------~~~~~~~~~~~~~~~~a 340 (444)
T PRK15115 275 ATHR-DLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLR-------------QAAERHKPFVRAFSTDA 340 (444)
T ss_pred eCCC-CHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHH-------------HHHHHhCCCCCCcCHHH
Confidence 7775 433332 3445567766678889986 4567767666653 12211110 134444
Q ss_pred HHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHH
Q 014789 251 FKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTAL 295 (418)
Q Consensus 251 ~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~ 295 (418)
+..+.. +...||+|.+.+++.+++..+ ....|+.+++....
T Consensus 341 ~~~L~~--~~WpgNvreL~~~i~~~~~~~--~~~~i~~~~l~~~~ 381 (444)
T PRK15115 341 MKRLMT--ASWPGNVRQLVNVIEQCVALT--SSPVISDALVEQAL 381 (444)
T ss_pred HHHHHh--CCCCChHHHHHHHHHHHHHhC--CCCccChhhhhhhh
Confidence 433333 345799999999999987653 34468888775443
No 222
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=9.3e-08 Score=87.52 Aligned_cols=164 Identities=13% Similarity=0.174 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhc
Q 014789 37 YSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQL 115 (418)
Q Consensus 37 ~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~ 115 (418)
...+.+.|...+..+. ++..+++|| .||++++..+++.+....+... -.|..+. ..+.+...-+++...
T Consensus 7 q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~----~~Cg~C~----~C~~i~~~~HPD~~~ 76 (290)
T PRK07276 7 QPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGV----LPCGHCR----SCRLIEQGEFSDVTV 76 (290)
T ss_pred HHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCC----CCCCCCH----HHHHHhcCCCCCeee
Confidence 3445556666666666 667789996 6899999999998875432100 0121111 111111111111000
Q ss_pred ccccC--CChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHH
Q 014789 116 LFSKM--ASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEK 193 (418)
Q Consensus 116 ~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~ 193 (418)
..+.+ ...++ .+.+.+.+......+...|+|||++|.|.....+.|...++.| +.+..+|.+|+. .+.+.|
T Consensus 77 i~p~~~~I~idq-IR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEP---p~~t~~iL~t~~---~~~lLp 149 (290)
T PRK07276 77 IEPQGQVIKTDT-IRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEP---QSEIYIFLLTND---ENKVLP 149 (290)
T ss_pred ecCCCCcCCHHH-HHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCC---CCCeEEEEEECC---hhhCch
Confidence 00111 22333 3334444544445567889999999999876666666655554 467788888876 678899
Q ss_pred HhhcccCceEEEecCCCHHHHHHHHHH
Q 014789 194 RVRSRFSHRKLLFLPPSKEDMQRLLEH 220 (418)
Q Consensus 194 ~v~sr~~~~~i~~~~~~~~e~~~il~~ 220 (418)
.++||+ +.++|++ +.+++.+++..
T Consensus 150 TI~SRc--q~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 150 TIKSRT--QIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred HHHHcc--eeeeCCC-cHHHHHHHHHH
Confidence 999999 6799977 77888888764
No 223
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.89 E-value=1.6e-08 Score=100.23 Aligned_cols=225 Identities=14% Similarity=0.154 Sum_probs=135.1
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++|....++.+...+..... ...+++|+|++||||+++++.+........ ..++.+||...... .+. +.
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~--~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~---~~~v~v~c~~~~~~--~~~---~~ 209 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAP--SDITVLLLGESGTGKEVLARALHQLSDRKD---KRFVAINCAAIPEN--LLE---SE 209 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhC--CCCCEEEECCCCcCHHHHHHHHHHhCCcCC---CCeEEEECCCCChH--HHH---HH
Confidence 578888899988888876533 356789999999999999998876543222 34678899776431 222 12
Q ss_pred HHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEEEE
Q 014789 109 LCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVVIG 180 (418)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~lI~ 180 (418)
+.+.....+.+.. . .....+.. ....+|+|||++.|....|..|..+++.... ...++-+|+
T Consensus 210 lfg~~~~~~~~~~--~----~~~g~~~~----a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~ 279 (445)
T TIGR02915 210 LFGYEKGAFTGAV--K----QTLGKIEY----AHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVC 279 (445)
T ss_pred hcCCCCCCcCCCc--c----CCCCceeE----CCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEE
Confidence 2111100010000 0 00001111 1345799999999998888888777754321 123567888
Q ss_pred eccCCChHHH-----HHHHhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH---HhCChh
Q 014789 181 VSCRLDADQL-----LEKRVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKN---ILADGR 250 (418)
Q Consensus 181 ~s~~~~~~~~-----l~~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 250 (418)
+|+. ++.+. +.+.+..|+....|.+||+. .+++..++.+.+. .++..... .+++++
T Consensus 280 ~~~~-~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~-------------~~~~~~~~~~~~~~~~a 345 (445)
T TIGR02915 280 ATNQ-DLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLE-------------RFARELKRKTKGFTDDA 345 (445)
T ss_pred ecCC-CHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHH-------------HHHHHhCCCCCCCCHHH
Confidence 8765 33332 34556677776678999997 5677777666653 22221110 133333
Q ss_pred HHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhH
Q 014789 251 FKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENF 291 (418)
Q Consensus 251 ~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v 291 (418)
+..+.. +...||+|.+.+++.+|+..+. ...|+.+++
T Consensus 346 ~~~L~~--~~wpgNvreL~~~i~~a~~~~~--~~~i~~~~l 382 (445)
T TIGR02915 346 LRALEA--HAWPGNVRELENKVKRAVIMAE--GNQITAEDL 382 (445)
T ss_pred HHHHHh--CCCCChHHHHHHHHHHHHHhCC--CCcccHHHc
Confidence 333332 3457999999999999876543 346777765
No 224
>PF13173 AAA_14: AAA domain
Probab=98.89 E-value=1.3e-08 Score=82.58 Aligned_cols=125 Identities=20% Similarity=0.262 Sum_probs=71.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIE 132 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 132 (418)
...++|+||+|+|||++++.+++.+.. .-.++++|+...........+ ..+.+.+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~----~~~~~yi~~~~~~~~~~~~~~---------------------~~~~~~~ 56 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLP----PENILYINFDDPRDRRLADPD---------------------LLEYFLE 56 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc----cccceeeccCCHHHHHHhhhh---------------------hHHHHHH
Confidence 356889999999999999999988761 134578876543321000000 0111111
Q ss_pred HHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChH-HHHHHHhhcccCceEEEecCCCH
Q 014789 133 MLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDAD-QLLEKRVRSRFSHRKLLFLPPSK 211 (418)
Q Consensus 133 ~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~-~~l~~~v~sr~~~~~i~~~~~~~ 211 (418)
.. ..+..+|+|||++.+.. ....+..+.+.. .++.+|.+++..... ......+..|. ..+.+.|++.
T Consensus 57 ~~-----~~~~~~i~iDEiq~~~~-~~~~lk~l~d~~----~~~~ii~tgS~~~~l~~~~~~~l~gr~--~~~~l~Plsf 124 (128)
T PF13173_consen 57 LI-----KPGKKYIFIDEIQYLPD-WEDALKFLVDNG----PNIKIILTGSSSSLLSKDIAESLAGRV--IEIELYPLSF 124 (128)
T ss_pred hh-----ccCCcEEEEehhhhhcc-HHHHHHHHHHhc----cCceEEEEccchHHHhhcccccCCCeE--EEEEECCCCH
Confidence 11 11467899999999853 455666665532 234444444432211 12223333444 3578999998
Q ss_pred HHH
Q 014789 212 EDM 214 (418)
Q Consensus 212 ~e~ 214 (418)
.|+
T Consensus 125 ~E~ 127 (128)
T PF13173_consen 125 REF 127 (128)
T ss_pred HHh
Confidence 875
No 225
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.89 E-value=8.8e-08 Score=97.01 Aligned_cols=140 Identities=14% Similarity=0.190 Sum_probs=87.9
Q ss_pred EEEEEecchhhhhhcchhHHHHHHhhhc------------------cCCCcEEEEEeccCCChHHHHHHHhhcccCc--e
Q 014789 143 TIIFVLDEFDLFAQGKQRLLYSLLDAMQ------------------SVTSQAVVIGVSCRLDADQLLEKRVRSRFSH--R 202 (418)
Q Consensus 143 ~~viilDEid~l~~~~~~~L~~l~~~~~------------------~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~--~ 202 (418)
.-+|+|||++.|....|..|...++... ..+.++.+|+++++ +....+++.+.+||.. -
T Consensus 227 GGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~-~ll~~~dpdL~~rfk~~~v 305 (637)
T PRK13765 227 KGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNL-DALENMHPALRSRIKGYGY 305 (637)
T ss_pred CcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCc-CHHHhhhHHHHHHhccCeE
Confidence 4788999999997666666666663222 11246788999988 5566778999999852 3
Q ss_pred EEEecCC---CHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccC-------HHHHHHH
Q 014789 203 KLLFLPP---SKEDMQRLLEHILS-LPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDST-------VNHLLRF 271 (418)
Q Consensus 203 ~i~~~~~---~~~e~~~il~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd-------~r~~~~~ 271 (418)
.+.|.+- +.+.+..++..... ...+..+ ..|+++++..+++.....+|+ .|.+.++
T Consensus 306 ~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l-------------~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l 372 (637)
T PRK13765 306 EVYMRDTMEDTPENRRKLVRFVAQEVKRDGKI-------------PHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGL 372 (637)
T ss_pred EEEcccccCCCHHHHHHHHHHHHHHhhhccCC-------------CCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHH
Confidence 4556432 24444444432111 0000000 135666777777766555553 7788889
Q ss_pred HHHHhhcccc-cCCCCChhhHHHHHh
Q 014789 272 LFLAVSYMDL-ESGFLSFENFKTALS 296 (418)
Q Consensus 272 l~~a~~~a~~-~~~~it~~~v~~a~~ 296 (418)
++.|..+|.. +...++.+||.+|..
T Consensus 373 ~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 373 VRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred HHHHHHHHHhhccceecHHHHHHHHH
Confidence 9998877753 666789999988764
No 226
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.88 E-value=1e-07 Score=90.15 Aligned_cols=178 Identities=21% Similarity=0.254 Sum_probs=117.7
Q ss_pred hhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHH-HHHHHHHhhhCCCCeEEEEEccccC---CChHHHHHHHHHH
Q 014789 33 PDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVL-ELILTDLLLEYPDTISVIKLNGLLH---SDDCCAFKEIARQ 108 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~-~~~~~~l~~~~~~~~~~v~in~~~~---~~~~~~~~~i~~~ 108 (418)
|.+.+++|..+|.. .....++|.||+||||+.++ .++++.- -.+.+|+|... .++..++..++++
T Consensus 1 R~e~~~~L~~wL~e----~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~q 69 (431)
T PF10443_consen 1 RKEAIEQLKSWLNE----NPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQ 69 (431)
T ss_pred CchHHHHHHHHHhc----CCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHh
Confidence 45667777777644 35567889999999999999 6666542 33689999763 5677888889888
Q ss_pred HHHhhh-----------------ccc-ccC--CChHhHHHHHHHH----Hhh-----cC----------------CCceE
Q 014789 109 LCMEHQ-----------------LLF-SKM--ASFDDNSQFMIEM----LRE-----CG----------------LAHKT 143 (418)
Q Consensus 109 l~~~~~-----------------~~~-~~~--~~~~~~~~~l~~~----l~~-----~~----------------~~~~~ 143 (418)
+|.-+- ... ..| .+.+..+..|++. |+. .. .....
T Consensus 70 vGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~ 149 (431)
T PF10443_consen 70 VGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERR 149 (431)
T ss_pred cCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccC
Confidence 753210 000 011 1333333333332 221 00 01125
Q ss_pred EEEEecchhhhhhcchhHHHH-HHhhhcc--CCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHH
Q 014789 144 IIFVLDEFDLFAQGKQRLLYS-LLDAMQS--VTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEH 220 (418)
Q Consensus 144 ~viilDEid~l~~~~~~~L~~-l~~~~~~--~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~ 220 (418)
.|||||.|..-... ..++|. |.+|... ...-..||++|++..+...|.+.+-++.- +.|.+...+.+.-.+++..
T Consensus 150 PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf-~tI~L~Das~~~Ak~yV~~ 227 (431)
T PF10443_consen 150 PVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVF-KTISLSDASPESAKQYVLS 227 (431)
T ss_pred CEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCce-eEEeecCCCHHHHHHHHHH
Confidence 68899999775544 566665 5577643 22334788899888888889999888753 6789999999999999999
Q ss_pred Hhc
Q 014789 221 ILS 223 (418)
Q Consensus 221 ~l~ 223 (418)
+|.
T Consensus 228 ~L~ 230 (431)
T PF10443_consen 228 QLD 230 (431)
T ss_pred Hhc
Confidence 986
No 227
>PF09079 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The C-terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity []. ; PDB: 2QBY_A 2V1U_A 1W5T_A 1W5S_B 1FNN_B.
Probab=98.86 E-value=1.3e-08 Score=75.93 Aligned_cols=83 Identities=18% Similarity=0.175 Sum_probs=63.7
Q ss_pred HHHHhhhhhhcC-CcccHHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhCCcceeec-CCCCccccccccEEEecCH
Q 014789 318 LVCLKRLEVKEQ-NSYNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFEHLLQRELICFTD-NRGYSQSVEFRPVKLLISS 395 (418)
Q Consensus 318 L~a~~~l~~~~~-~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~-~~g~~~~~~~~~~~l~~~~ 395 (418)
|+|++.+...++ .++++++||+.|+.+|+..+..+ .+.+.|..++..|..+|+|.... ++|+ ..+.++.|+|.++|
T Consensus 1 L~Al~~~~~~~~~~~~~~~~vy~~Y~~lc~~~~~~p-ls~~r~~~~l~eL~~~gli~~~~~~~G~-~~G~~~~~~l~~d~ 78 (85)
T PF09079_consen 1 LLALAALLKEGGKEEVTTGEVYEVYEELCESLGVDP-LSYRRFSDYLSELEMLGLIESERKGRGR-GRGRTREISLNVDP 78 (85)
T ss_dssp HHHHHHHHHHCTSSSEEHHHHHHHHHHHHHHTTS-----HHHHHHHHHHHHHTTSEEEEEEE-TT--CTEEEEEEECSSS
T ss_pred CHHHHHHHHhCCCCceeHHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHhCCCeEEEeecCCC-CCCeEEEEEecCCH
Confidence 567777666644 89999999999999999998865 45566778888899999987643 2332 46899999999999
Q ss_pred HHHHHHH
Q 014789 396 IELHQGL 402 (418)
Q Consensus 396 ~~v~~~~ 402 (418)
++|.++|
T Consensus 79 ~~v~~aL 85 (85)
T PF09079_consen 79 EDVLEAL 85 (85)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9999986
No 228
>PRK08181 transposase; Validated
Probab=98.85 E-value=4.5e-08 Score=89.05 Aligned_cols=102 Identities=18% Similarity=0.234 Sum_probs=63.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 131 (418)
.+.+++|+||||||||+++.+++..+.... ..+++++. ..++..+..... ..+. ..+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g---~~v~f~~~------~~L~~~l~~a~~---------~~~~----~~~l 162 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENG---WRVLFTRT------TDLVQKLQVARR---------ELQL----ESAI 162 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcC---CceeeeeH------HHHHHHHHHHHh---------CCcH----HHHH
Confidence 456899999999999999999999887653 44555543 223333322110 0111 1223
Q ss_pred HHHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
+.+. .+-+|||||++..... .+..|+.+++..... . .+|.+||.
T Consensus 163 ~~l~------~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~-~--s~IiTSN~ 208 (269)
T PRK08181 163 AKLD------KFDLLILDDLAYVTKDQAETSVLFELISARYER-R--SILITANQ 208 (269)
T ss_pred HHHh------cCCEEEEeccccccCCHHHHHHHHHHHHHHHhC-C--CEEEEcCC
Confidence 3333 3559999999887654 456888888865433 2 35666665
No 229
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.85 E-value=8.9e-08 Score=84.99 Aligned_cols=129 Identities=12% Similarity=0.176 Sum_probs=82.6
Q ss_pred eEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCCh----------HHHHHHHhhcccCceEEEecCCCH
Q 014789 142 KTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDA----------DQLLEKRVRSRFSHRKLLFLPPSK 211 (418)
Q Consensus 142 ~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~----------~~~l~~~v~sr~~~~~i~~~~~~~ 211 (418)
-|.|+||||++.|.-..-..|+..++.+- ++ ++|++||+-.. +--+.+.+..|+ -.|.-.+|+.
T Consensus 296 vPGVLFIDEVhMLDiEcFTyL~kalES~i---aP-ivifAsNrG~~~irGt~d~~sPhGip~dllDRl--~Iirt~~y~~ 369 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLDIECFTYLHKALESPI---AP-IVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL--LIIRTLPYDE 369 (456)
T ss_pred cCcceEeeehhhhhhHHHHHHHHHhcCCC---Cc-eEEEecCCcceeecCCcCCCCCCCCCHHHhhhe--eEEeeccCCH
Confidence 58999999999996655555555554322 34 56777775321 112234456666 4688899999
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHH-hCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccc-cCCCCChh
Q 014789 212 EDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNI-LADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDL-ESGFLSFE 289 (418)
Q Consensus 212 ~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~-~~~~it~~ 289 (418)
+++.+|++.|... +++ ++++++ ..+..+ +.+.+.|++++++..|.-.|.. +...|..+
T Consensus 370 ~e~r~Ii~~Ra~~------------------E~l~~~e~a~-~~l~~~-gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~ 429 (456)
T KOG1942|consen 370 EEIRQIIKIRAQV------------------EGLQVEEEAL-DLLAEI-GTSTSLRYAVQLLTPASILAKTNGRKEISVE 429 (456)
T ss_pred HHHHHHHHHHHhh------------------hcceecHHHH-HHHHhh-ccchhHHHHHHhcCHHHHHHHHcCCceeecc
Confidence 9999999999751 111 223322 222222 2356899999998876555543 66688888
Q ss_pred hHHHHHh
Q 014789 290 NFKTALS 296 (418)
Q Consensus 290 ~v~~a~~ 296 (418)
||.++..
T Consensus 430 dvee~~~ 436 (456)
T KOG1942|consen 430 DVEEVTE 436 (456)
T ss_pred cHHHHHH
Confidence 8887654
No 230
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=6.7e-08 Score=88.14 Aligned_cols=141 Identities=16% Similarity=0.135 Sum_probs=88.6
Q ss_pred HHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccC---
Q 014789 45 SSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKM--- 120 (418)
Q Consensus 45 ~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~--- 120 (418)
...+..+. ++..+++||.|+||++++..+++.+....... .| +.+....+++.....+.+
T Consensus 10 ~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~------~c----------~~~~~~~HPD~~~i~p~~~~~ 73 (290)
T PRK05917 10 IQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPE------AA----------YKISQKIHPDIHEFSPQGKGR 73 (290)
T ss_pred HHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCcc------HH----------HHHhcCCCCCEEEEecCCCCC
Confidence 33345544 77778999999999999999999876532100 01 111110001100001111
Q ss_pred -CChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhccc
Q 014789 121 -ASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRF 199 (418)
Q Consensus 121 -~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~ 199 (418)
.+.++ .+.+.+.+......+..-|+|||++|.|....++.|..+++.| +.++.+|.+|+. .+.+.|.++||+
T Consensus 74 ~I~idq-iR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEP---p~~~~fiL~~~~---~~~ll~TI~SRc 146 (290)
T PRK05917 74 LHSIET-PRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDP---PQHGVIILTSAK---PQRLPPTIRSRS 146 (290)
T ss_pred cCcHHH-HHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcC---CCCeEEEEEeCC---hhhCcHHHHhcc
Confidence 12222 2344444544445578899999999999887677776666654 477888888877 678899999999
Q ss_pred CceEEEecCCC
Q 014789 200 SHRKLLFLPPS 210 (418)
Q Consensus 200 ~~~~i~~~~~~ 210 (418)
..+.|+|..
T Consensus 147 --q~~~~~~~~ 155 (290)
T PRK05917 147 --LSIHIPMEE 155 (290)
T ss_pred --eEEEccchh
Confidence 578888764
No 231
>PRK06921 hypothetical protein; Provisional
Probab=98.85 E-value=1e-07 Score=86.97 Aligned_cols=126 Identities=18% Similarity=0.202 Sum_probs=71.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 131 (418)
...+++|+|++|+|||+++.++++.+....+ ..++|+.. ..++..+.... .. .....
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g--~~v~y~~~------~~l~~~l~~~~--------------~~-~~~~~ 172 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKG--VPVLYFPF------VEGFGDLKDDF--------------DL-LEAKL 172 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcC--ceEEEEEH------HHHHHHHHHHH--------------HH-HHHHH
Confidence 4678999999999999999999999876521 55666653 12233322211 00 11122
Q ss_pred HHHhhcCCCceEEEEEecchhh-------hhhcchhHHHHHHhhhccCCCcEEEEEeccCCC-hHHHHHHHhhcccC---
Q 014789 132 EMLRECGLAHKTIIFVLDEFDL-------FAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD-ADQLLEKRVRSRFS--- 200 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~-------l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~-~~~~l~~~v~sr~~--- 200 (418)
+.+. ..-+|||||++. ...-.+..|+.+++.......+ +|.+||... -...+++++.||+.
T Consensus 173 ~~~~------~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~--tIitsn~~~~el~~~~~~l~sRi~~r~ 244 (266)
T PRK06921 173 NRMK------KVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKP--ILISSELTIDELLDIDEALGSRIVEMC 244 (266)
T ss_pred HHhc------CCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCC--EEEECCCCHHHHhhhhhHHHHHHHHhc
Confidence 2232 345999999944 1111346788888776543333 455666532 11122466666643
Q ss_pred -ceEEEecC
Q 014789 201 -HRKLLFLP 208 (418)
Q Consensus 201 -~~~i~~~~ 208 (418)
...+.|..
T Consensus 245 ~~~~i~~~g 253 (266)
T PRK06921 245 KDYLVIIKG 253 (266)
T ss_pred cCeEEEecC
Confidence 33455544
No 232
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.85 E-value=4.1e-09 Score=89.48 Aligned_cols=109 Identities=22% Similarity=0.198 Sum_probs=72.3
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh-hhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL-LEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~-~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 131 (418)
-.++++.||+|+|||.+++.+++.+. ... -..+.+||........ ...++..+.... .....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~---~~~~~~d~s~~~~~~~-~~~~~~~l~~~~-------~~~v~------ 65 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSE---RPLIRIDMSEYSEGDD-VESSVSKLLGSP-------PGYVG------ 65 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSC---CEEEEEEGGGHCSHHH-CSCHCHHHHHHT-------TCHHH------
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCc---cchHHHhhhcccccch-HHhhhhhhhhcc-------cceee------
Confidence 45789999999999999999999987 332 5678899988776211 111222221111 00000
Q ss_pred HHHhhcCCCceEEEEEecchhhhhh-----------cchhHHHHHHhhhcc--------CCCcEEEEEeccCCC
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQ-----------GKQRLLYSLLDAMQS--------VTSQAVVIGVSCRLD 186 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~-----------~~~~~L~~l~~~~~~--------~~~~~~lI~~s~~~~ 186 (418)
.. ...||+|||||+... .-|+.|+.+++.... ...++++|+++|-..
T Consensus 66 --~~------~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 66 --AE------EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp --HH------HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred --cc------chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 00 112999999999999 677888888865332 235889999998865
No 233
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.85 E-value=4.4e-08 Score=97.63 Aligned_cols=229 Identities=13% Similarity=0.136 Sum_probs=139.1
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++|.+....++...+.... ....++++.|++||||+++++.+........ ..++.+||..... ..+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~~a--~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~---~~~~~~~c~~~~~--~~~~~~l-- 205 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLS--RSDITVLINGESGTGKELVARALHRHSPRAN---GPFIALNMAAIPK--DLIESEL-- 205 (463)
T ss_pred ceeecCHHHHHHHHHHHHHh--CcCCeEEEECCCCCCHHHHHHHHHHhCCCCC---CCeEEEeCCCCCH--HHHHHHh--
Confidence 47788888888888876643 3356789999999999999888766543322 4567889877643 1222211
Q ss_pred HHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEEEE
Q 014789 109 LCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVVIG 180 (418)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~lI~ 180 (418)
++... ..+.+... . -...+.. .....|+|||++.+....|..|..+++.... ...++-+|+
T Consensus 206 fg~~~-~~~~~~~~--~----~~g~~~~----a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~ 274 (463)
T TIGR01818 206 FGHEK-GAFTGANT--R----RQGRFEQ----ADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVA 274 (463)
T ss_pred cCCCC-CCCCCccc--C----CCCcEEE----CCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEE
Confidence 11110 00100000 0 0001111 1245699999999998888888777754321 123566787
Q ss_pred eccCCChHH-----HHHHHhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH---HHhCChh
Q 014789 181 VSCRLDADQ-----LLEKRVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK---NILADGR 250 (418)
Q Consensus 181 ~s~~~~~~~-----~l~~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 250 (418)
+++. ++.+ .+.+.+..|+....|++||+. .+++..++.+.+. .++.... ..+++++
T Consensus 275 ~~~~-~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~-------------~~~~~~~~~~~~~~~~a 340 (463)
T TIGR01818 275 ATHQ-NLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLA-------------LAARELDVEPKLLDPEA 340 (463)
T ss_pred eCCC-CHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHH-------------HHHHHhCCCCCCcCHHH
Confidence 7765 3333 234566677776679999998 7889888888764 2222111 1244444
Q ss_pred HHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHH
Q 014789 251 FKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTAL 295 (418)
Q Consensus 251 ~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~ 295 (418)
+..+.. +...||+|.+.+++.+++..+. ...|+.+++...+
T Consensus 341 ~~~L~~--~~wpgNvreL~~~~~~~~~~~~--~~~i~~~~l~~~~ 381 (463)
T TIGR01818 341 LERLKQ--LRWPGNVRQLENLCRWLTVMAS--GDEVLVSDLPAEL 381 (463)
T ss_pred HHHHHh--CCCCChHHHHHHHHHHHHHhCC--CCcccHHhchHHH
Confidence 444433 3568999999999999876643 3467877775443
No 234
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=6e-08 Score=86.49 Aligned_cols=139 Identities=14% Similarity=0.144 Sum_probs=84.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccc--cCCChHhHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFS--KMASFDDNSQF 129 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~--~~~~~~~~~~~ 129 (418)
.++..+++||.|+||..++..+++.+-...+.. .|..+.+ .+.+...-+.+.....+ .....++ .+.
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~------~Cg~C~s----C~~i~~~~HPDl~~i~p~~~~I~id~-ir~ 74 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANG------FCKTCES----CLKILNGKYNDFYLIFDQKNPIKKED-ALS 74 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCC------CCCCCHH----HHHHhcCCCCCEEEecCCcccCCHHH-HHH
Confidence 577899999999999999999999876543110 1322221 11121111111111011 1122233 233
Q ss_pred HHHHHhhcC-CCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecC
Q 014789 130 MIEMLRECG-LAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLP 208 (418)
Q Consensus 130 l~~~l~~~~-~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~ 208 (418)
+.+.+.... ..++.-|+|||++|.+.....+.|..+++. ++.+..+|.+|+. .+.+.+.++||+ +.+.|++
T Consensus 75 l~~~l~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEE---Pp~~t~fiLit~~---~~~lLpTI~SRC--q~~~~~~ 146 (261)
T PRK05818 75 IINKLNRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEE---PPKNTYGIFTTRN---ENNILNTILSRC--VQYVVLS 146 (261)
T ss_pred HHHHHccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcC---CCCCeEEEEEECC---hHhCchHhhhhe--eeeecCC
Confidence 344343222 124678999999999987555555555444 4578889998877 678899999999 5678887
Q ss_pred C
Q 014789 209 P 209 (418)
Q Consensus 209 ~ 209 (418)
+
T Consensus 147 ~ 147 (261)
T PRK05818 147 K 147 (261)
T ss_pred h
Confidence 7
No 235
>PHA02244 ATPase-like protein
Probab=98.84 E-value=3.4e-08 Score=92.28 Aligned_cols=150 Identities=19% Similarity=0.212 Sum_probs=92.4
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
..++....+......+..++.. +.+++|+||||||||+++++++..+.. .++.+++.. +...
T Consensus 97 ~~ig~sp~~~~~~~ri~r~l~~--~~PVLL~GppGtGKTtLA~aLA~~lg~------pfv~In~l~--d~~~-------- 158 (383)
T PHA02244 97 TKIASNPTFHYETADIAKIVNA--NIPVFLKGGAGSGKNHIAEQIAEALDL------DFYFMNAIM--DEFE-------- 158 (383)
T ss_pred cccCCCHHHHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhCC------CEEEEecCh--HHHh--------
Confidence 4567777777777777776654 457999999999999999999988643 245566321 1100
Q ss_pred HHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhc--------cCCCcEEEEE
Q 014789 109 LCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ--------SVTSQAVVIG 180 (418)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~--------~~~~~~~lI~ 180 (418)
+... ......+.. ..+...+. .+.+++|||++.+....+..|..+++... ....++.+|+
T Consensus 159 L~G~----i~~~g~~~d--gpLl~A~~------~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIA 226 (383)
T PHA02244 159 LKGF----IDANGKFHE--TPFYEAFK------KGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVIS 226 (383)
T ss_pred hccc----ccccccccc--hHHHHHhh------cCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEE
Confidence 1000 000111110 01222222 35699999999998776667777664211 1235789999
Q ss_pred eccCCC------h--HHHHHHHhhcccCceEEEecCCC
Q 014789 181 VSCRLD------A--DQLLEKRVRSRFSHRKLLFLPPS 210 (418)
Q Consensus 181 ~s~~~~------~--~~~l~~~v~sr~~~~~i~~~~~~ 210 (418)
++|+.. + ...+.+.+.+||. .|.|.-++
T Consensus 227 TsN~~~~G~~~~y~G~k~L~~AllDRFv--~I~~dyp~ 262 (383)
T PHA02244 227 AGNTLGKGADHIYVARNKIDGATLDRFA--PIEFDYDE 262 (383)
T ss_pred eeCCCccCcccccCCCcccCHHHHhhcE--EeeCCCCc
Confidence 999842 1 2567889999994 56766554
No 236
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.80 E-value=2.2e-08 Score=91.67 Aligned_cols=164 Identities=17% Similarity=0.286 Sum_probs=93.7
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh
Q 014789 34 DSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH 113 (418)
Q Consensus 34 ~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~ 113 (418)
..+-......+...+.. +.+++|+||+|||||++++.+++.+... .+.+..+++...++.. .++.+.++--..
T Consensus 16 T~dt~r~~~ll~~l~~~--~~pvLl~G~~GtGKT~li~~~l~~l~~~---~~~~~~~~~s~~Tts~-~~q~~ie~~l~k- 88 (272)
T PF12775_consen 16 TVDTVRYSYLLDLLLSN--GRPVLLVGPSGTGKTSLIQNFLSSLDSD---KYLVITINFSAQTTSN-QLQKIIESKLEK- 88 (272)
T ss_dssp -HHHHHHHHHHHHHHHC--TEEEEEESSTTSSHHHHHHHHHHCSTTC---CEEEEEEES-TTHHHH-HHHHCCCTTECE-
T ss_pred cHHHHHHHHHHHHHHHc--CCcEEEECCCCCchhHHHHhhhccCCcc---ccceeEeeccCCCCHH-HHHHHHhhcEEc-
Confidence 34444555666666654 6689999999999999999998776543 2556667765554432 233222111000
Q ss_pred hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc---c---hhHHHHHHhhhc---cCC------CcEEE
Q 014789 114 QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG---K---QRLLYSLLDAMQ---SVT------SQAVV 178 (418)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~---~---~~~L~~l~~~~~---~~~------~~~~l 178 (418)
.++..+ ....++.+|++|||+..-..+ . -++|.++++... ..+ .++.+
T Consensus 89 ----~~~~~~-------------gP~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~ 151 (272)
T PF12775_consen 89 ----RRGRVY-------------GPPGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQF 151 (272)
T ss_dssp ----CTTEEE-------------EEESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEE
T ss_pred ----CCCCCC-------------CCCCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEE
Confidence 000000 012346899999999765543 2 256666664321 111 36788
Q ss_pred EEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 179 IGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 179 I~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
|++.++..=...+.+|+.+.| ..+.+++++.+.+..|....+.
T Consensus 152 vaa~~p~~Gr~~is~R~~r~f--~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 152 VAAMNPTGGRNPISPRFLRHF--NILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp EEEESSTTT--SHHHHHHTTE--EEEE----TCCHHHHHHHHHHH
T ss_pred EEecCCCCCCCCCChHHhhhe--EEEEecCCChHHHHHHHHHHHh
Confidence 888876431224788888888 5788999999999988888764
No 237
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.79 E-value=2.2e-09 Score=84.50 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=61.6
Q ss_pred eEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEML 134 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 134 (418)
+++|.|+||+|||++++.+++.+... +.+|.|.....+.+++..-.-.. ......+..+.-+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~------f~RIq~tpdllPsDi~G~~v~~~-~~~~f~~~~GPif----------- 62 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLS------FKRIQFTPDLLPSDILGFPVYDQ-ETGEFEFRPGPIF----------- 62 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--------EEEEE--TT--HHHHHEEEEEET-TTTEEEEEE-TT------------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCc------eeEEEecCCCCcccceeeeeecc-CCCeeEeecChhh-----------
Confidence 58999999999999999999987754 34566544443433321100000 0000001111111
Q ss_pred hhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEEEEeccCCChHH--HHHHHhhccc
Q 014789 135 RECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVVIGVSCRLDADQ--LLEKRVRSRF 199 (418)
Q Consensus 135 ~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~lI~~s~~~~~~~--~l~~~v~sr~ 199 (418)
.-|+++||+....++.|+.|+..+...+. ...++.||++.|+.+... .|.....+||
T Consensus 63 --------~~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 63 --------TNILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp --------SSEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred --------hceeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 23899999999999999999988865432 346789999999876432 4556666676
No 238
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.77 E-value=7.4e-08 Score=91.75 Aligned_cols=216 Identities=17% Similarity=0.153 Sum_probs=127.1
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
..++|++..+.++.+.++-... ...+++|.|.+||||-.+++.+-+.-.... -.+|++||...... ++. +
T Consensus 223 ~~iIG~S~am~~ll~~i~~VA~--Sd~tVLi~GETGtGKElvAraIH~~S~R~~---kPfV~~NCAAlPes--LlE---S 292 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVVAK--SDSTVLIRGETGTGKELVARAIHQLSPRRD---KPFVKLNCAALPES--LLE---S 292 (550)
T ss_pred ccceecCHHHHHHHHHHHHHhc--CCCeEEEecCCCccHHHHHHHHHhhCcccC---CCceeeeccccchH--HHH---H
Confidence 5799999999999999877654 456899999999999999997755433332 34689999776531 221 2
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEEE
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVVI 179 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~lI 179 (418)
.|.+..+.-|++..+.. ...+.- .....++||||-.+.-.-|..|...+...+- .+..+-||
T Consensus 293 ELFGHeKGAFTGA~~~r------~GrFEl----AdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiI 362 (550)
T COG3604 293 ELFGHEKGAFTGAINTR------RGRFEL----ADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVI 362 (550)
T ss_pred HHhcccccccccchhcc------Ccceee----cCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEE
Confidence 23221111111110000 000111 1345789999999987766555555543221 23578899
Q ss_pred EeccCCChHHHH-----HHHhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH---HHhCCh
Q 014789 180 GVSCRLDADQLL-----EKRVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK---NILADG 249 (418)
Q Consensus 180 ~~s~~~~~~~~l-----~~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 249 (418)
++||+ |+.+.+ ...+.-|++...+.+||+. .+++--...+.++ +++.... ..++++
T Consensus 363 AATNR-DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle-------------~~~~~~gr~~l~ls~~ 428 (550)
T COG3604 363 AATNR-DLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLE-------------KFRRRLGRAILSLSAE 428 (550)
T ss_pred eccch-hHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHH-------------HHHHhcCCcccccCHH
Confidence 99998 544432 2233446654457778886 3444433333332 1121111 123444
Q ss_pred hHHHHHHHHhccccCHHHHHHHHHHHhhcc
Q 014789 250 RFKEIVNTLVNLDSTVNHLLRFLFLAVSYM 279 (418)
Q Consensus 250 ~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a 279 (418)
+...+.. +...||+|.+.+++.+|+-.|
T Consensus 429 Al~~L~~--y~wPGNVRELen~veRavlla 456 (550)
T COG3604 429 ALELLSS--YEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHHHHHc--CCCCCcHHHHHHHHHHHHHHh
Confidence 4443333 456899999999999998765
No 239
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=7.5e-07 Score=80.84 Aligned_cols=147 Identities=18% Similarity=0.226 Sum_probs=93.9
Q ss_pred eEEEEEecchhhhhhcc------------hhHHHHHHhhhc-------cCCCcEEEEEeccCC-ChHHHHHHHhhcccCc
Q 014789 142 KTIIFVLDEFDLFAQGK------------QRLLYSLLDAMQ-------SVTSQAVVIGVSCRL-DADQLLEKRVRSRFSH 201 (418)
Q Consensus 142 ~~~viilDEid~l~~~~------------~~~L~~l~~~~~-------~~~~~~~lI~~s~~~-~~~~~l~~~v~sr~~~ 201 (418)
...|+||||||.++.+. |.-|.-+.+-.. .....+.||++..-+ .-+..|-|.+..||.
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfP- 328 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFP- 328 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCc-
Confidence 45799999999998751 222333332221 123467777765433 335678899999996
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH-----HhCChhHHHHHHHHhccc-----cCHHHHHHH
Q 014789 202 RKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKN-----ILADGRFKEIVNTLVNLD-----STVNHLLRF 271 (418)
Q Consensus 202 ~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-----gd~r~~~~~ 271 (418)
-++.+.+++.+++..||..- ..+.+++|.+-++. .|+++++..++.-.+... =.+|++-.+
T Consensus 329 IRVEL~~Lt~~Df~rILtep---------~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTv 399 (444)
T COG1220 329 IRVELDALTKEDFERILTEP---------KASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTV 399 (444)
T ss_pred eEEEcccCCHHHHHHHHcCc---------chHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHH
Confidence 56899999999999998763 23556677654442 366777777666555432 267888888
Q ss_pred HHHHhhcccc-------cCCCCChhhHHHHHhcc
Q 014789 272 LFLAVSYMDL-------ESGFLSFENFKTALSNS 298 (418)
Q Consensus 272 l~~a~~~a~~-------~~~~it~~~v~~a~~~~ 298 (418)
+.+.++..+- ..-.|+.+.|.+-+..+
T Consensus 400 lErlLediSFeA~d~~g~~v~Id~~yV~~~l~~l 433 (444)
T COG1220 400 LERLLEDISFEAPDMSGQKVTIDAEYVEEKLGDL 433 (444)
T ss_pred HHHHHHHhCccCCcCCCCeEEEcHHHHHHHHHHH
Confidence 8776655431 22246666776655444
No 240
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.76 E-value=2e-07 Score=91.82 Aligned_cols=149 Identities=13% Similarity=0.125 Sum_probs=86.6
Q ss_pred eEEEEEecchhhhhhcchhHHHHHHhhhcc----------CCCcEEEEEeccCCCh------------------HHHHHH
Q 014789 142 KTIIFVLDEFDLFAQGKQRLLYSLLDAMQS----------VTSQAVVIGVSCRLDA------------------DQLLEK 193 (418)
Q Consensus 142 ~~~viilDEid~l~~~~~~~L~~l~~~~~~----------~~~~~~lI~~s~~~~~------------------~~~l~~ 193 (418)
...+++|||++.+....+..|.+.++.... ...++.+|+++|+.+. ...+..
T Consensus 294 ~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~ 373 (506)
T PRK09862 294 HNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSG 373 (506)
T ss_pred cCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCH
Confidence 456999999999987777777776643321 2457899999998641 124666
Q ss_pred HhhcccCceEEEecCCCHHHHHH---------HHHHHhc----C------CCCCCCChHHHHHHHHHHHHHhCChhHHHH
Q 014789 194 RVRSRFSHRKLLFLPPSKEDMQR---------LLEHILS----L------PVDSSLPHAYAVEFNKKIKNILADGRFKEI 254 (418)
Q Consensus 194 ~v~sr~~~~~i~~~~~~~~e~~~---------il~~~l~----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (418)
.+.+||.. .+.+++++.+++.+ -+..|+. . ..+..+....+..| ...+......
T Consensus 374 plLDRfdL-~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~------~~l~~~~~~~ 446 (506)
T PRK09862 374 PFLDRFDL-SLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQF------CKLESEDARW 446 (506)
T ss_pred hHHhhccE-EEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHH------hCCCHHHHHH
Confidence 78899973 56777765443211 0111110 0 00011111111111 0112223333
Q ss_pred HHHHhcc-ccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhc
Q 014789 255 VNTLVNL-DSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSN 297 (418)
Q Consensus 255 ~~~~~~~-~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~ 297 (418)
+...+.. .-+.|....+++.|...|. .+.+.|+.+||.+|+.-
T Consensus 447 l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 447 LEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 3333322 2368888888888877776 48889999999999864
No 241
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.76 E-value=6.7e-08 Score=96.18 Aligned_cols=227 Identities=15% Similarity=0.157 Sum_probs=132.8
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.+++.+..+..+...+..... ...+++++|++||||+++++.+........ -.++.+||...... .+ -..
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~--~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~---~~~~~i~c~~~~~~--~~---~~~ 213 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIAL--SQASVLISGESGTGKELIARAIHYNSRRAK---GPFIKVNCAALPES--LL---ESE 213 (457)
T ss_pred ceecccHHHhHHHHHHHHHcC--CCcEEEEEcCCCccHHHHHHHHHHhCCCCC---CCeEEEECCCCCHH--HH---HHH
Confidence 467777777777776666543 356899999999999999998866443222 34688899776432 11 122
Q ss_pred HHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEEEE
Q 014789 109 LCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVVIG 180 (418)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~lI~ 180 (418)
+.+.....+.+.... . ...+.. ....+|+|||+|.+....|..|..+++.... ...++-+|+
T Consensus 214 lfg~~~~~~~~~~~~--~----~g~~~~----a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~ 283 (457)
T PRK11361 214 LFGHEKGAFTGAQTL--R----QGLFER----ANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIA 283 (457)
T ss_pred hcCCCCCCCCCCCCC--C----CCceEE----CCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEE
Confidence 211110000000000 0 000111 1345799999999998878777777654321 123577888
Q ss_pred eccCCChHH-----HHHHHhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH---HHhCChh
Q 014789 181 VSCRLDADQ-----LLEKRVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK---NILADGR 250 (418)
Q Consensus 181 ~s~~~~~~~-----~l~~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 250 (418)
+|+. ++.. .+.+.+..|+....|.+||+. .+++..++...+. .++.... ..+++++
T Consensus 284 ~t~~-~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~-------------~~~~~~~~~~~~~~~~a 349 (457)
T PRK11361 284 ATNR-DLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQ-------------KFSSENQRDIIDIDPMA 349 (457)
T ss_pred eCCC-CHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHH-------------HHHHHcCCCCCCcCHHH
Confidence 8876 4332 234556667766678889987 5667666666543 2222111 0133333
Q ss_pred HHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHH
Q 014789 251 FKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKT 293 (418)
Q Consensus 251 ~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~ 293 (418)
...+.. +...||+|.+.+++.+++..+ ....|+.+|+-.
T Consensus 350 ~~~L~~--~~wpgNv~eL~~~~~~~~~~~--~~~~i~~~~l~~ 388 (457)
T PRK11361 350 MSLLTA--WSWPGNIRELSNVIERAVVMN--SGPIIFSEDLPP 388 (457)
T ss_pred HHHHHc--CCCCCcHHHHHHHHHHHHHhC--CCCcccHHHChH
Confidence 322222 345799999999999987653 334688777653
No 242
>PTZ00202 tuzin; Provisional
Probab=98.74 E-value=4.2e-07 Score=86.15 Aligned_cols=169 Identities=12% Similarity=0.107 Sum_probs=103.7
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
..++||+.|+..|...+... ....+..+.|+|++|+|||++++.+...+. ...+++|.. ++..+++.++.
T Consensus 262 ~~FVGReaEla~Lr~VL~~~-d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr---g~eElLr~LL~ 331 (550)
T PTZ00202 262 RQFVSREAEESWVRQVLRRL-DTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR---GTEDTLRSVVK 331 (550)
T ss_pred cCCCCcHHHHHHHHHHHhcc-CCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC---CHHHHHHHHHH
Confidence 46899999999999988753 333456778999999999999999987664 224556643 56789999999
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCC-ceEEEE--EecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLA-HKTIIF--VLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~vi--ilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
+|+.+. .....+.++.|.+.+...... +...|| =|-|-+.|..-..+.+.-.. +.++|=|.+--+
T Consensus 332 ALGV~p------~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~------drr~ch~v~evp 399 (550)
T PTZ00202 332 ALGVPN------VEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVVALAC------DRRLCHVVIEVP 399 (550)
T ss_pred HcCCCC------cccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHc------cchhheeeeeeh
Confidence 997532 122345566666655443222 333444 45566666432111111111 123333333222
Q ss_pred CChHHHHH--HHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 185 LDADQLLE--KRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 185 ~~~~~~l~--~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
.+.|. .-..-|+ ..+.+|+++.+|-.++.++.+.
T Consensus 400 ---leslt~~~~~lprl--df~~vp~fsr~qaf~y~~h~~d 435 (550)
T PTZ00202 400 ---LESLTIANTLLPRL--DFYLVPNFSRSQAFAYTQHAID 435 (550)
T ss_pred ---HhhcchhcccCccc--eeEecCCCCHHHHHHHHhhccc
Confidence 22221 1223355 4577899999999999999874
No 243
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.74 E-value=5.8e-07 Score=86.54 Aligned_cols=211 Identities=13% Similarity=0.152 Sum_probs=105.3
Q ss_pred CCChhhhHHHHHHHHHHH--Hh-cCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEE-EEccccCCCh------H
Q 014789 30 SDSPDSNYSKLKFLVSSS--VT-EACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVI-KLNGLLHSDD------C 99 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~--~~-~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v-~in~~~~~~~------~ 99 (418)
+.-.-+-+.++..++..+ .. +-+++.+||+||+||||||+++.+++++.-.. + +.|+.....+ .
T Consensus 84 LAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~------~Ew~Npi~~~~~~~~h~~t 157 (634)
T KOG1970|consen 84 LAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQL------IEWSNPINLKEPENLHNET 157 (634)
T ss_pred HhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCcee------eeecCCccccccccccccc
Confidence 334455677888887722 22 22356788999999999999999999886433 2 2222221110 0
Q ss_pred HHHH-HHHHHHHHhhhcccccCCChHhHHHHHHHHH------hh--cCCCceEEEEEecchhhhhhc-chhHHHHHHhhh
Q 014789 100 CAFK-EIARQLCMEHQLLFSKMASFDDNSQFMIEML------RE--CGLAHKTIIFVLDEFDLFAQG-KQRLLYSLLDAM 169 (418)
Q Consensus 100 ~~~~-~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l------~~--~~~~~~~~viilDEid~l~~~-~~~~L~~l~~~~ 169 (418)
..+. -+.++|. .++.+.... .. ....+.+.+|+|||+-..... +...+..++...
T Consensus 158 ~~~~~~~~s~L~---------------~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y 222 (634)
T KOG1970|consen 158 SFLMFPYQSQLA---------------VFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLY 222 (634)
T ss_pred hhcccchhhHHH---------------HHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHHHH
Confidence 0000 1122221 111111111 11 112346789999998766554 333333333322
Q ss_pred c-cCCCcEEEEEeccCC---ChHH-HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH
Q 014789 170 Q-SVTSQAVVIGVSCRL---DADQ-LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKN 244 (418)
Q Consensus 170 ~-~~~~~~~lI~~s~~~---~~~~-~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 244 (418)
. ....++++|.+-... +-.+ .+.+.+.-+.+...|.|-|....-+.+.|.......... ..+ ..|+
T Consensus 223 ~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~-~s~---~k~~----- 293 (634)
T KOG1970|consen 223 VSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANK-KSG---IKVP----- 293 (634)
T ss_pred HhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhccc-ccC---CcCc-----
Confidence 1 123565444432221 1111 222333333333579999999887777777655411100 000 0010
Q ss_pred HhCChhHHHHHHHHhccccCHHHHHHHHHHH
Q 014789 245 ILADGRFKEIVNTLVNLDSTVNHLLRFLFLA 275 (418)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a 275 (418)
+...++.++ .+.+||+|.|++.|...
T Consensus 294 --~~~~v~~i~---~~s~GDIRsAInsLQls 319 (634)
T KOG1970|consen 294 --DTAEVELIC---QGSGGDIRSAINSLQLS 319 (634)
T ss_pred --hhHHHHHHH---HhcCccHHHHHhHhhhh
Confidence 011233333 34589999999998764
No 244
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.73 E-value=2.7e-06 Score=89.86 Aligned_cols=300 Identities=13% Similarity=0.167 Sum_probs=164.2
Q ss_pred CCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcccc--CCChHH----HHH
Q 014789 30 SDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLL--HSDDCC----AFK 103 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~--~~~~~~----~~~ 103 (418)
++||+.|++.|...+.++ ..+.+..+++.|.+|.|||.+++.+.+.+.+.. -.++.--|.. ...+.. .++
T Consensus 2 l~GRe~ev~~Ll~~f~~v-~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~---~~~i~~~f~q~~~~ipl~~lvq~~r 77 (849)
T COG3899 2 LYGRETELAQLLAAFDRV-SKGRGEVVLVAGESGIGKSALVNEVHKPITQQR---GYFIKGKFDQFERNIPLSPLVQAFR 77 (849)
T ss_pred CCchHhHHHHHHHHHHHH-hCCCeEEEEEeecCCCcHHHHHHHHHHHHhccc---eeeeHhhcccccCCCchHHHHHHHH
Confidence 789999999999999997 455677899999999999999999999888763 2223222322 222322 333
Q ss_pred HHHHHHHHhh-------------------h--c--------ccc-cC-----CChH--hHHH-HHHHHHhhcCCCceEEE
Q 014789 104 EIARQLCMEH-------------------Q--L--------LFS-KM-----ASFD--DNSQ-FMIEMLRECGLAHKTII 145 (418)
Q Consensus 104 ~i~~~l~~~~-------------------~--~--------~~~-~~-----~~~~--~~~~-~l~~~l~~~~~~~~~~v 145 (418)
++..++.... . . .+. +. .++. ..+. .+...+...-...+|+|
T Consensus 78 ~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plV 157 (849)
T COG3899 78 DLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLV 157 (849)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeE
Confidence 4444331100 0 0 000 00 0000 0011 11111111112447999
Q ss_pred EEecchhhhhhcchhHHHHHHhhhc--cCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 146 FVLDEFDLFAQGKQRLLYSLLDAMQ--SVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 146 iilDEid~l~~~~~~~L~~l~~~~~--~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
+|+|++|+..+..-++|..+++... ....+-+....+... .+..-.++.-....|.+.|++..+...++.+.+.
T Consensus 158 i~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~----~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~ 233 (849)
T COG3899 158 IVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRP----TLGEILKSATNITTITLAPLSRADTNQLVAATLG 233 (849)
T ss_pred EEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccc----hhhHHhhcCCceeEEecCcCchhhHHHHHHHHhC
Confidence 9999999998877677777665432 100111222222221 2233344444456899999999999999999986
Q ss_pred CCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhc--c--cccCCCCChh--hHHHHHhc
Q 014789 224 LPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSY--M--DLESGFLSFE--NFKTALSN 297 (418)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~--a--~~~~~~it~~--~v~~a~~~ 297 (418)
-..+ ...+....+.++. .|++=.+-++++...+. . +.+......+ .+.. ...
T Consensus 234 ~~~~------------------~~~p~~~~i~~kt---~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~-~~~ 291 (849)
T COG3899 234 CTKL------------------LPAPLLELIFEKT---KGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI-LAT 291 (849)
T ss_pred Cccc------------------ccchHHHHHHHHh---cCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC-chh
Confidence 2111 1122334444443 46666566665543332 1 1121111111 1100 000
Q ss_pred cC--CCchhhhhcCCChHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhCCcce
Q 014789 298 SH--RQPKLECIKDCSILELYILVCLKRLEVKEQNSYNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFEHLLQRELIC 373 (418)
Q Consensus 298 ~~--~~~~~~~l~~L~~~~~~iL~a~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~ 373 (418)
.. .......++.||...+.||.+++-+ +..|+.+-+ ..++. .....+....|+.|.+-.++-
T Consensus 292 ~~~vv~~l~~rl~kL~~~t~~Vl~~AA~i----G~~F~l~~L----a~l~~------~~~~~~a~~l~~al~e~lI~~ 355 (849)
T COG3899 292 TDAVVEFLAARLQKLPGTTREVLKAAACI----GNRFDLDTL----AALAE------DSPALEAAALLDALQEGLILP 355 (849)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CccCCHHHH----HHHHh------hchHHHHHHHHHHhHhhceec
Confidence 00 1124567899999999999877644 355665555 22222 234455668888888866554
No 245
>PRK06526 transposase; Provisional
Probab=98.72 E-value=3.3e-08 Score=89.42 Aligned_cols=103 Identities=16% Similarity=0.200 Sum_probs=61.0
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 131 (418)
.+.+++|+||||||||+++..++..+.... ..+.++++ ..++..+... . .. ....
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g---~~v~f~t~------~~l~~~l~~~----~----~~-~~~~------- 151 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAG---HRVLFATA------AQWVARLAAA----H----HA-GRLQ------- 151 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCC---CchhhhhH------HHHHHHHHHH----H----hc-CcHH-------
Confidence 467899999999999999999998876543 23333221 2233332211 1 00 1111
Q ss_pred HHHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccCCCcEEEEEeccCC
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVTSQAVVIGVSCRL 185 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~~~~~lI~~s~~~ 185 (418)
..+... ..+-+|||||++.+... .+..|+.+++..... . .+|.+||..
T Consensus 152 ~~l~~l---~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~-~--s~IitSn~~ 201 (254)
T PRK06526 152 AELVKL---GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYER-A--SLIVTSNKP 201 (254)
T ss_pred HHHHHh---ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhc-C--CEEEEcCCC
Confidence 112221 14569999999987543 567889988765432 2 366666653
No 246
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=98.71 E-value=9.3e-06 Score=77.83 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=60.0
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCC-------ChHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHS-------DDCC 100 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~-------~~~~ 100 (418)
..-+||+.+++.+...|... ..+.+..-+|.|.-|+|||++++.+.....++. +.+.+++..... ....
T Consensus 25 ~~~VGr~~e~~~l~~~l~~v-~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~~~~---fvvs~v~ls~e~~lh~~~g~~~~ 100 (416)
T PF10923_consen 25 HIAVGREREIEALDRDLDRV-ADGGSSFKFIRGEYGSGKTFFLRLIRERALEKG---FVVSEVDLSPERPLHGTGGQLEA 100 (416)
T ss_pred ceeechHHHHHHHHHHHHHH-hCCCCeEEEEEeCCCCcHHHHHHHHHHHHHHcC---CEEEEEecCCCcccccccccHHH
Confidence 34589999999999999774 666777788999999999999999888776654 667777665521 2334
Q ss_pred HHHHHHHHHH
Q 014789 101 AFKEIARQLC 110 (418)
Q Consensus 101 ~~~~i~~~l~ 110 (418)
+|++++..|.
T Consensus 101 ~Yr~l~~nL~ 110 (416)
T PF10923_consen 101 LYRELMRNLS 110 (416)
T ss_pred HHHHHHHhcC
Confidence 6777777663
No 247
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.71 E-value=2.7e-07 Score=85.86 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=71.5
Q ss_pred ChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHH
Q 014789 32 SPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCM 111 (418)
Q Consensus 32 gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~ 111 (418)
++.........++.....+..+.+++|+||+|+|||+++.+++..+.... ..+.++.. ..++.++......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g---~~v~~~~~------~~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKG---VSSTLLHF------PEFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CCEEEEEH------HHHHHHHHHHHhc
Confidence 34444555555555543333567899999999999999999999998654 33444432 1234444433211
Q ss_pred hhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc---chhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 112 EHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG---KQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~---~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
.+. ....+.+. ..-||||||+..-... ..++|+.+++.... .....|.+||-
T Consensus 206 ---------~~~----~~~l~~l~------~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~--~~~~ti~TSNl 260 (306)
T PRK08939 206 ---------GSV----KEKIDAVK------EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQ--EELPTFFTSNF 260 (306)
T ss_pred ---------CcH----HHHHHHhc------CCCEEEEecCCCccccHHHHHHHHHHHHHHHHH--CCCeEEEECCC
Confidence 111 22233333 3559999999755332 23566767654322 23456667775
No 248
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.70 E-value=1.6e-06 Score=77.35 Aligned_cols=138 Identities=9% Similarity=0.101 Sum_probs=81.1
Q ss_pred hhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCC-------h--HHHHHHHhhcccCceEEE
Q 014789 135 RECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD-------A--DQLLEKRVRSRFSHRKLL 205 (418)
Q Consensus 135 ~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~-------~--~~~l~~~v~sr~~~~~i~ 205 (418)
.+....--|.|+||||++.|.-..-.+|..-+ +..-+|+++++ ||+-- + +.-+.-.+..|+ -.|.
T Consensus 281 eEGKAeivpGVLFIDEvHMLDIEcFsFlNrAl---E~d~~Piiima-TNrgit~iRGTn~~SphGiP~D~lDR~--lII~ 354 (454)
T KOG2680|consen 281 EEGKAEIVPGVLFIDEVHMLDIECFSFLNRAL---ENDMAPIIIMA-TNRGITRIRGTNYRSPHGIPIDLLDRM--LIIS 354 (454)
T ss_pred hcCCeeeccceEEEeeehhhhhHHHHHHHHHh---hhccCcEEEEE-cCCceEEeecCCCCCCCCCcHHHhhhh--heee
Confidence 33334446899999999999664444444433 33335655444 44310 0 001111233444 3578
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhccc-ccCC
Q 014789 206 FLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESG 284 (418)
Q Consensus 206 ~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~ 284 (418)
-.||+.+++.+||+.|.. ++.. .++++ ...++.++. ..-+.|++++++..|-..+. ....
T Consensus 355 t~py~~~d~~~IL~iRc~---EEdv--------------~m~~~-A~d~Lt~i~-~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 355 TQPYTEEDIKKILRIRCQ---EEDV--------------EMNPD-ALDLLTKIG-EATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred cccCcHHHHHHHHHhhhh---hhcc--------------ccCHH-HHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 899999999999999975 1110 12233 334444432 24578999998877654443 3556
Q ss_pred CCChhhHHHHHhc
Q 014789 285 FLSFENFKTALSN 297 (418)
Q Consensus 285 ~it~~~v~~a~~~ 297 (418)
.+..+|+.++..-
T Consensus 416 ~v~~~di~r~y~L 428 (454)
T KOG2680|consen 416 VVEVDDIERVYRL 428 (454)
T ss_pred eeehhHHHHHHHH
Confidence 7888899888754
No 249
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.68 E-value=1.9e-06 Score=94.95 Aligned_cols=166 Identities=13% Similarity=0.147 Sum_probs=91.5
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCC-----------
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHS----------- 96 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~----------- 96 (418)
+.++|++.+++++...+.. .......+-|+|++|+||||+++.++..+...+.. .++++.....
T Consensus 184 ~~~vG~~~~l~~l~~lL~l--~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g---~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHL--ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQS---SVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred ccccchHHHHHHHHHHHcc--ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCe---EEEeeccccccchhhcccccc
Confidence 5799999999999988743 34456678899999999999999999888765421 2233221000
Q ss_pred C----hHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccC
Q 014789 97 D----DCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSV 172 (418)
Q Consensus 97 ~----~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~ 172 (418)
. ...+..+++.++....+. .. .....+.+.+. +++++||||+++.... .+.+....+|.
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~------~~-~~~~~~~~~L~-----~krvLLVLDdv~~~~~--l~~L~~~~~~~--- 321 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDI------KI-YHLGAMEERLK-----HRKVLIFIDDLDDQDV--LDALAGQTQWF--- 321 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCc------cc-CCHHHHHHHHh-----CCeEEEEEeCCCCHHH--HHHHHhhCccC---
Confidence 0 001112222222111100 00 01123334443 3689999999875411 12222222221
Q ss_pred CCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHh
Q 014789 173 TSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHIL 222 (418)
Q Consensus 173 ~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l 222 (418)
...-.||.+|.+.. .+.. ... .+.+.++.++.++-.+++..++
T Consensus 322 ~~GsrIIiTTrd~~---vl~~---~~~-~~~~~v~~l~~~ea~~LF~~~A 364 (1153)
T PLN03210 322 GSGSRIIVITKDKH---FLRA---HGI-DHIYEVCLPSNELALEMFCRSA 364 (1153)
T ss_pred CCCcEEEEEeCcHH---HHHh---cCC-CeEEEecCCCHHHHHHHHHHHh
Confidence 12334566665522 2111 112 2467888899898888888765
No 250
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=7.5e-07 Score=88.86 Aligned_cols=160 Identities=19% Similarity=0.314 Sum_probs=105.3
Q ss_pred CCChhhhHHHHHHHHHHHHhcC-----CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHH
Q 014789 30 SDSPDSNYSKLKFLVSSSVTEA-----CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKE 104 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~~-----~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~ 104 (418)
.++++..+..+.+++..-..-. ....++++|+||||||++++.+++.+.. .++.++|.......
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~------h~~evdc~el~~~s----- 471 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGL------HLLEVDCYELVAES----- 471 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCC------ceEeccHHHHhhcc-----
Confidence 3567777777777765543222 2567899999999999999999999874 45888886543210
Q ss_pred HHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-c-------hhHHHHHHh--hhccCCC
Q 014789 105 IARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-K-------QRLLYSLLD--AMQSVTS 174 (418)
Q Consensus 105 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-~-------~~~L~~l~~--~~~~~~~ 174 (418)
.+ ..+..+..++...+.. .|.||++-.+|.+... . +..+..++. .......
T Consensus 472 -~~--------------~~etkl~~~f~~a~~~----~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~ 532 (953)
T KOG0736|consen 472 -AS--------------HTETKLQAIFSRARRC----SPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCP 532 (953)
T ss_pred -cc--------------hhHHHHHHHHHHHhhc----CceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCC
Confidence 00 0111223333333333 6999999999988754 1 122222222 1222346
Q ss_pred cEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 175 QAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 175 ~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
++++|++++. .+.+.+.+++-|. ..|.++-++.+|..+|++..+.
T Consensus 533 ~~ivv~t~~s---~~~lp~~i~~~f~-~ei~~~~lse~qRl~iLq~y~~ 577 (953)
T KOG0736|consen 533 PVIVVATTSS---IEDLPADIQSLFL-HEIEVPALSEEQRLEILQWYLN 577 (953)
T ss_pred ceEEEEeccc---cccCCHHHHHhhh-hhccCCCCCHHHHHHHHHHHHh
Confidence 7899999887 4566777888775 4689999999999999998875
No 251
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.61 E-value=2.5e-06 Score=92.33 Aligned_cols=175 Identities=16% Similarity=0.155 Sum_probs=101.5
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
..++.|+.-.+.+.. ....+.++|+||+|.||||++...++... .+.|+.+.. ...++..++..++.
T Consensus 14 ~~~~~R~rl~~~l~~-------~~~~~~~~v~apaG~GKTtl~~~~~~~~~-----~~~w~~l~~-~d~~~~~f~~~l~~ 80 (903)
T PRK04841 14 HNTVVRERLLAKLSG-------ANNYRLVLVTSPAGYGKTTLISQWAAGKN-----NLGWYSLDE-SDNQPERFASYLIA 80 (903)
T ss_pred cccCcchHHHHHHhc-------ccCCCeEEEECCCCCCHHHHHHHHHHhCC-----CeEEEecCc-ccCCHHHHHHHHHH
Confidence 356778866665532 23467899999999999999999886432 255555544 23456678888888
Q ss_pred HHHHhhhccccc------C---CChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-chhHHHHHHhhhccCCCcEE
Q 014789 108 QLCMEHQLLFSK------M---ASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-KQRLLYSLLDAMQSVTSQAV 177 (418)
Q Consensus 108 ~l~~~~~~~~~~------~---~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-~~~~L~~l~~~~~~~~~~~~ 177 (418)
.++.......+. . .........+...+.. ...|++||||++|.+... ....+..+++.. ..++.
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~---~~~~~ 154 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELAD---WHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ---PENLT 154 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhc---CCCCEEEEEeCcCcCCChHHHHHHHHHHHhC---CCCeE
Confidence 885332110000 0 1222233334444433 247999999999998644 234555555442 34556
Q ss_pred EEEeccCCChHHHHHHHhhcccCceEEEec--CCCHHHHHHHHHHHhc
Q 014789 178 VIGVSCRLDADQLLEKRVRSRFSHRKLLFL--PPSKEDMQRLLEHILS 223 (418)
Q Consensus 178 lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~--~~~~~e~~~il~~~l~ 223 (418)
+|.+|....-.....-++...+ ..+... +++.+|..+++..++.
T Consensus 155 lv~~sR~~~~~~~~~l~~~~~~--~~l~~~~l~f~~~e~~~ll~~~~~ 200 (903)
T PRK04841 155 LVVLSRNLPPLGIANLRVRDQL--LEIGSQQLAFDHQEAQQFFDQRLS 200 (903)
T ss_pred EEEEeCCCCCCchHhHHhcCcc--eecCHHhCCCCHHHHHHHHHhccC
Confidence 6556654321111111122222 223333 8999999999988765
No 252
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.5e-06 Score=89.72 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=95.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcC----CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEA----CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFK 103 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~----~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~ 103 (418)
+.++|.++.+..|...+..+-.+- +...+++.||.|+|||-++++++..+.... -.++.++...+..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse---~~~IriDmse~~e------ 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSE---ENFIRLDMSEFQE------ 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCc---cceEEechhhhhh------
Confidence 578999999999999998875332 345688999999999999999999886543 5677887654332
Q ss_pred HHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCc
Q 014789 104 EIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQ 175 (418)
Q Consensus 104 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~ 175 (418)
.+.+... +++..++. ....|.+.+++ +++.||+|||||......+..|+.+++-... .-.+
T Consensus 633 --vskligs----p~gyvG~e-~gg~Lteavrr----rP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN 701 (898)
T KOG1051|consen 633 --VSKLIGS----PPGYVGKE-EGGQLTEAVKR----RPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKN 701 (898)
T ss_pred --hhhccCC----Ccccccch-hHHHHHHHHhc----CCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccc
Confidence 2222111 22222222 23355666655 4689999999999988778888888875432 2257
Q ss_pred EEEEEeccC
Q 014789 176 AVVIGVSCR 184 (418)
Q Consensus 176 ~~lI~~s~~ 184 (418)
++||.|+|.
T Consensus 702 ~I~IMTsn~ 710 (898)
T KOG1051|consen 702 AIFIMTSNV 710 (898)
T ss_pred eEEEEeccc
Confidence 889998875
No 253
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.60 E-value=2e-07 Score=79.85 Aligned_cols=102 Identities=19% Similarity=0.323 Sum_probs=60.0
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 131 (418)
.+.+++|+||+|+|||+++.+++..+.... ..+.+++. .+++..+.... ...+. ..+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g---~~v~f~~~----------~~L~~~l~~~~-----~~~~~----~~~~ 103 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKG---YSVLFITA----------SDLLDELKQSR-----SDGSY----EELL 103 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEEH----------HHHHHHHHCCH-----CCTTH----CHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCC---cceeEeec----------Cceeccccccc-----cccch----hhhc
Confidence 467899999999999999999999888754 55666652 23334442211 11122 2234
Q ss_pred HHHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
+.+... -+|||||+...... ..+.|+.+++..... . ..|.+||.
T Consensus 104 ~~l~~~------dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~-~--~tIiTSN~ 149 (178)
T PF01695_consen 104 KRLKRV------DLLILDDLGYEPLSEWEAELLFEIIDERYER-K--PTIITSNL 149 (178)
T ss_dssp HHHHTS------SCEEEETCTSS---HHHHHCTHHHHHHHHHT----EEEEEESS
T ss_pred Cccccc------cEecccccceeeecccccccchhhhhHhhcc-c--CeEeeCCC
Confidence 444443 48999999765432 556778888765532 2 34557765
No 254
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.60 E-value=8e-07 Score=80.56 Aligned_cols=119 Identities=20% Similarity=0.240 Sum_probs=70.3
Q ss_pred hhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHh
Q 014789 33 PDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCME 112 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~ 112 (418)
+.+.+..+.++....- .+.+++++||||+|||+++-+++..+. ..+ +.+.+++. .+++.++......
T Consensus 88 ~~~~l~~~~~~~~~~~---~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g--~sv~f~~~------~el~~~Lk~~~~~- 154 (254)
T COG1484 88 DKKALEDLASLVEFFE---RGENLVLLGPPGVGKTHLAIAIGNELL-KAG--ISVLFITA------PDLLSKLKAAFDE- 154 (254)
T ss_pred hHHHHHHHHHHHHHhc---cCCcEEEECCCCCcHHHHHHHHHHHHH-HcC--CeEEEEEH------HHHHHHHHHHHhc-
Confidence 4555666665554432 678999999999999999999999998 432 55555542 2234444433321
Q ss_pred hhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 113 HQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 113 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
......+...+. ..-|+||||+-..... ..+.++.++...-.. ... +.+||.
T Consensus 155 -----------~~~~~~l~~~l~------~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~-~~~--~~tsN~ 208 (254)
T COG1484 155 -----------GRLEEKLLRELK------KVDLLIIDDIGYEPFSQEEADLLFQLISRRYES-RSL--IITSNL 208 (254)
T ss_pred -----------CchHHHHHHHhh------cCCEEEEecccCccCCHHHHHHHHHHHHHHHhh-ccc--eeecCC
Confidence 011222333343 3559999999876544 345565555433222 222 666665
No 255
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=3.8e-06 Score=75.77 Aligned_cols=27 Identities=37% Similarity=0.616 Sum_probs=24.5
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
..++++.||+|||||.+++.+++.|.-
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnV 123 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNV 123 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCC
Confidence 568999999999999999999998863
No 256
>PRK09183 transposase/IS protein; Provisional
Probab=98.47 E-value=1.7e-06 Score=78.88 Aligned_cols=127 Identities=16% Similarity=0.174 Sum_probs=70.0
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 131 (418)
.+.+++|+||+|+|||+++..++..+.... ..+.++++. .++..+...... .... ..+.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G---~~v~~~~~~------~l~~~l~~a~~~---------~~~~---~~~~ 159 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAG---IKVRFTTAA------DLLLQLSTAQRQ---------GRYK---TTLQ 159 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEeHH------HHHHHHHHHHHC---------CcHH---HHHH
Confidence 467899999999999999999987765433 344555431 122222111100 0111 1111
Q ss_pred HHHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccCCCcEEEEEeccCCC--hHHHH------HHHhhcccCc
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVTSQAVVIGVSCRLD--ADQLL------EKRVRSRFSH 201 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~~~~~lI~~s~~~~--~~~~l------~~~v~sr~~~ 201 (418)
..+ ..+-++||||++..... .+..|+.+++..... . .+|.+||... +.+.+ -.++.+|+.+
T Consensus 160 ~~~------~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~-~--s~iiTsn~~~~~w~~~~~~d~~~~~ai~dRl~~ 230 (259)
T PRK09183 160 RGV------MAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEK-G--SMILTSNLPFGQWDQTFAGDAALTSAMLDRLLH 230 (259)
T ss_pred HHh------cCCCEEEEcccccCCCChHHHHHHHHHHHHHHhc-C--cEEEecCCCHHHHHHHhcCchhHHHHHHHHHhc
Confidence 111 14569999999876443 445788888765433 2 2566666532 22233 2356677643
Q ss_pred --eEEEecC
Q 014789 202 --RKLLFLP 208 (418)
Q Consensus 202 --~~i~~~~ 208 (418)
..|.|..
T Consensus 231 ~~~~i~~~g 239 (259)
T PRK09183 231 HSHVVQIKG 239 (259)
T ss_pred ceEEEeecC
Confidence 3455554
No 257
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.46 E-value=1.6e-06 Score=85.83 Aligned_cols=227 Identities=15% Similarity=0.163 Sum_probs=129.7
Q ss_pred CCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHH
Q 014789 30 SDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQL 109 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 109 (418)
++|....+..+...+.... .....++|+|.+|+||+++++.+........ -.++.+||..... ..+.. .+
T Consensus 141 lig~s~~~~~~~~~i~~~~--~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~---~~~i~~~c~~~~~--~~~~~---~l 210 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVA--PSEATVLIHGDSGTGKELVARAIHASSARSE---KPLVTLNCAALNE--SLLES---EL 210 (441)
T ss_pred eEecCHHHHHHHHHHhhcc--CCCCeEEEEecCCCCHHHHHHHHHHcCCCCC---CCeeeeeCCCCCH--HHHHH---Hh
Confidence 5666666666665554432 3467899999999999999998765443222 4568889976542 12221 22
Q ss_pred HHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEEEEe
Q 014789 110 CMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVVIGV 181 (418)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~lI~~ 181 (418)
.......+.+... .. ...+.. ....+|+|||+|.|....|..|..+++.... ...++-+|++
T Consensus 211 fg~~~~~~~~~~~--~~----~g~~~~----a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~ 280 (441)
T PRK10365 211 FGHEKGAFTGADK--RR----EGRFVE----ADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAA 280 (441)
T ss_pred cCCCCCCcCCCCc--CC----CCceeE----CCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEe
Confidence 1110000000000 00 000111 1356799999999998878777776654321 1235667888
Q ss_pred ccCCChHHH-----HHHHhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH---HhCChhH
Q 014789 182 SCRLDADQL-----LEKRVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKN---ILADGRF 251 (418)
Q Consensus 182 s~~~~~~~~-----l~~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 251 (418)
|+. +.... +.+.+..++....|.+||+. .+++..++...+. .++..... .++++++
T Consensus 281 t~~-~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~-------------~~~~~~~~~~~~~~~~a~ 346 (441)
T PRK10365 281 THR-DLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQ-------------RFAERNRKAVKGFTPQAM 346 (441)
T ss_pred CCC-CHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHH-------------HHHHHhCCCCCCcCHHHH
Confidence 766 33332 34445556665678889986 4567666666653 22221110 1344433
Q ss_pred HHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHH
Q 014789 252 KEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTA 294 (418)
Q Consensus 252 ~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a 294 (418)
..+.. +...||+|.+.+++.+++..+ ....|+.+++...
T Consensus 347 ~~L~~--~~wpgN~reL~~~~~~~~~~~--~~~~i~~~~l~~~ 385 (441)
T PRK10365 347 DLLIH--YDWPGNIRELENAVERAVVLL--TGEYISERELPLA 385 (441)
T ss_pred HHHHh--CCCCCHHHHHHHHHHHHHHhC--CCCccchHhCchh
Confidence 33333 334799999999999987653 3346888777543
No 258
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.45 E-value=2.6e-07 Score=83.23 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=61.4
Q ss_pred hcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHh---
Q 014789 49 TEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDD--- 125 (418)
Q Consensus 49 ~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~--- 125 (418)
.-+.+..++|.||+|+|||++++.+++.+.........++++-+....+...+++.+...+-... .+.+...
T Consensus 12 ~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~-----~~~~~~~~~~ 86 (249)
T cd01128 12 PIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIAST-----FDEPPERHVQ 86 (249)
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEec-----CCCCHHHHHH
Confidence 34568899999999999999999999988765323244666555544566666666621110000 0011111
Q ss_pred HHHHHHHHHhhcCCCceEEEEEecchhhhhhc
Q 014789 126 NSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG 157 (418)
Q Consensus 126 ~~~~l~~~l~~~~~~~~~~viilDEid~l~~~ 157 (418)
....+.+........++.+++++||+..+...
T Consensus 87 ~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a 118 (249)
T cd01128 87 VAEMVLEKAKRLVEHGKDVVILLDSITRLARA 118 (249)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHhhhh
Confidence 11122222222112367999999999998663
No 259
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.44 E-value=2.1e-06 Score=72.42 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=30.0
Q ss_pred EEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCC
Q 014789 56 ILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHS 96 (418)
Q Consensus 56 ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~ 96 (418)
++|+|+||+|||+++..++..+.... ..++++++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~---~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKG---GKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcC---CEEEEEECCcch
Confidence 68999999999999999998886533 556777765443
No 260
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.43 E-value=1.3e-06 Score=82.98 Aligned_cols=109 Identities=18% Similarity=0.278 Sum_probs=69.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 131 (418)
.+.++||+|++|+|||.++..+.+.+..+... ..| .+.++.++.+.+....+ .... +..+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~---------R~H--Fh~Fm~~vh~~l~~~~~----~~~~----l~~va 121 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKR---------RVH--FHEFMLDVHSRLHQLRG----QDDP----LPQVA 121 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccc---------ccc--ccHHHHHHHHHHHHHhC----CCcc----HHHHH
Confidence 58899999999999999999998887643211 111 13466666666654320 0111 12222
Q ss_pred HHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
+.+.. ...||++|||+.-...+--+|..|++..- ...+++|+|||..+
T Consensus 122 ~~l~~-----~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gvvlVaTSN~~P 169 (362)
T PF03969_consen 122 DELAK-----ESRLLCFDEFQVTDIADAMILKRLFEALF--KRGVVLVATSNRPP 169 (362)
T ss_pred HHHHh-----cCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCCEEEecCCCCh
Confidence 22322 34599999998665555567777776543 36789999999864
No 261
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.40 E-value=1.3e-05 Score=81.29 Aligned_cols=177 Identities=17% Similarity=0.101 Sum_probs=107.3
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcccc-CCChHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLL-HSDDCCAFKEIAR 107 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~-~~~~~~~~~~i~~ 107 (418)
..+-|+.-++.|.. +...+-++|+-|.|.||||++-..+..... . ..+.++++.. .+++..+++.++.
T Consensus 20 ~~v~R~rL~~~L~~-------~~~~RL~li~APAGfGKttl~aq~~~~~~~-~---~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 20 NYVVRPRLLDRLRR-------ANDYRLILISAPAGFGKTTLLAQWRELAAD-G---AAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred cccccHHHHHHHhc-------CCCceEEEEeCCCCCcHHHHHHHHHHhcCc-c---cceeEeecCCccCCHHHHHHHHHH
Confidence 44556655554432 235778999999999999999998873322 2 3345555543 5678889999999
Q ss_pred HHHHhhh------ccc---ccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-chhHHHHHHhhhccCCCcEE
Q 014789 108 QLCMEHQ------LLF---SKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-KQRLLYSLLDAMQSVTSQAV 177 (418)
Q Consensus 108 ~l~~~~~------~~~---~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-~~~~L~~l~~~~~~~~~~~~ 177 (418)
.++.-.. ... ....+....++.++.-+... .+|+.+|||+.+..... -...|..|++- .+.++.
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~---~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l~ 162 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASY---EGPLYLVLDDYHLISDPALHEALRFLLKH---APENLT 162 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhh---cCceEEEeccccccCcccHHHHHHHHHHh---CCCCeE
Confidence 8864320 000 01223444555555555544 47999999999998765 34555555543 347888
Q ss_pred EEEeccCCChHHHHHHHhhcccCceEEE--ecCCCHHHHHHHHHHHhcC
Q 014789 178 VIGVSCRLDADQLLEKRVRSRFSHRKLL--FLPPSKEDMQRLLEHILSL 224 (418)
Q Consensus 178 lI~~s~~~~~~~~l~~~v~sr~~~~~i~--~~~~~~~e~~~il~~~l~~ 224 (418)
+|.+|...+-...-..+++.-+- .|. --.++.+|..+++..+...
T Consensus 163 lvv~SR~rP~l~la~lRlr~~ll--Ei~~~~Lrf~~eE~~~fl~~~~~l 209 (894)
T COG2909 163 LVVTSRSRPQLGLARLRLRDELL--EIGSEELRFDTEEAAAFLNDRGSL 209 (894)
T ss_pred EEEEeccCCCCcccceeehhhHH--hcChHhhcCChHHHHHHHHHcCCC
Confidence 88888764322211222222210 111 1345678889999988753
No 262
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.39 E-value=4.4e-06 Score=84.21 Aligned_cols=218 Identities=11% Similarity=0.035 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHhcC-CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHH--HHHHHHHhhh
Q 014789 38 SKLKFLVSSSVTEA-CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKE--IARQLCMEHQ 114 (418)
Q Consensus 38 ~~l~~~l~~~~~~~-~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~--i~~~l~~~~~ 114 (418)
+.++..+.-...++ .-+.++|.|++|+|||++++.+..-+.... .+.-++.+. +...++.. |...|.....
T Consensus 9 ~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~~~--p~r~~p~~~----t~~~L~Gg~Dl~~~l~~g~~ 82 (584)
T PRK13406 9 ADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPAGT--PLRRLPPGI----ADDRLLGGLDLAATLRAGRP 82 (584)
T ss_pred HHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCCCC--CcccCCCCC----cHHHccCCchHHhHhhcCCc
Confidence 34444444444444 557899999999999999999988876532 122222222 22222221 1111110000
Q ss_pred cccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc----------CCCcEEEEEeccC
Q 014789 115 LLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS----------VTSQAVVIGVSCR 184 (418)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~----------~~~~~~lI~~s~~ 184 (418)
. +..| .|. ....-||+|||+..+..+.++.|.+-++.... ...++.+|++-|.
T Consensus 83 ~-~~pG------------lla----~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~ 145 (584)
T PRK13406 83 V-AQRG------------LLA----EADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEG 145 (584)
T ss_pred C-CCCC------------cee----eccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCC
Confidence 0 0000 011 12457999999999988766666666544221 2367889997555
Q ss_pred CChHHHHHHHhhcccCceEEEecCCCHHHHH-------HHHHHHhcCCCCCCCChHHHHHHHHHHHHH-hCChhHHHHHH
Q 014789 185 LDADQLLEKRVRSRFSHRKLLFLPPSKEDMQ-------RLLEHILSLPVDSSLPHAYAVEFNKKIKNI-LADGRFKEIVN 256 (418)
Q Consensus 185 ~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~-------~il~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 256 (418)
.++.+.|.+.+.+||. -.+.+.+++..+.. +|...|-. +.+. ++++.+..++
T Consensus 146 ~~~~~~L~~~lLDRf~-l~v~v~~~~~~~~~~~~~~~~~I~~AR~r------------------l~~v~v~~~~l~~i~- 205 (584)
T PRK13406 146 AEEDERAPAALADRLA-FHLDLDGLALRDAREIPIDADDIAAARAR------------------LPAVGPPPEAIAALC- 205 (584)
T ss_pred hhcccCCCHHhHhheE-EEEEcCCCChHHhcccCCCHHHHHHHHHH------------------HccCCCCHHHHHHHH-
Confidence 4455668888999997 35777777655432 22222211 1111 2233233333
Q ss_pred HHhcccc--CHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhcc
Q 014789 257 TLVNLDS--TVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNS 298 (418)
Q Consensus 257 ~~~~~~g--d~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~ 298 (418)
.++...| +.|-.+.+++.|...|. .+...|+.+||.+|..-+
T Consensus 206 ~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lv 250 (584)
T PRK13406 206 AAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLV 250 (584)
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3333333 77888888887776664 488899999999987644
No 263
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.37 E-value=1.3e-06 Score=76.29 Aligned_cols=119 Identities=22% Similarity=0.288 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh
Q 014789 35 SNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ 114 (418)
Q Consensus 35 ~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~ 114 (418)
+|.+.+...+ . ...+..+|.|+||||||++++.+.+.+.... ..++.+.. + ......+.+..+....
T Consensus 5 ~Q~~a~~~~l----~-~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g---~~v~~~ap---T--~~Aa~~L~~~~~~~a~ 71 (196)
T PF13604_consen 5 EQREAVRAIL----T-SGDRVSVLQGPAGTGKTTLLKALAEALEAAG---KRVIGLAP---T--NKAAKELREKTGIEAQ 71 (196)
T ss_dssp HHHHHHHHHH----H-CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT-----EEEEES---S--HHHHHHHHHHHTS-EE
T ss_pred HHHHHHHHHH----h-cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC---CeEEEECC---c--HHHHHHHHHhhCcchh
Confidence 4555555543 2 2356788999999999999999988877653 33343321 1 2234444444322110
Q ss_pred cccccCCChHhHHHHHHHHHhhcCC--------CceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEecc
Q 014789 115 LLFSKMASFDDNSQFMIEMLRECGL--------AHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSC 183 (418)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~~l~~~~~--------~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~ 183 (418)
. +...+..... ....-+|||||+-.+.. ..+..+++.......+++++|-.+
T Consensus 72 -----------T---i~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~---~~~~~ll~~~~~~~~klilvGD~~ 131 (196)
T PF13604_consen 72 -----------T---IHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS---RQLARLLRLAKKSGAKLILVGDPN 131 (196)
T ss_dssp -----------E---HHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH---HHHHHHHHHS-T-T-EEEEEE-TT
T ss_pred -----------h---HHHHHhcCCcccccccccCCcccEEEEecccccCH---HHHHHHHHHHHhcCCEEEEECCcc
Confidence 0 1111111110 12345999999999865 567777777666567788888654
No 264
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.37 E-value=2.4e-05 Score=75.81 Aligned_cols=123 Identities=25% Similarity=0.316 Sum_probs=72.1
Q ss_pred eEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEML 134 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 134 (418)
.++|+||+++||||+++.+.+.+.+. .++++-........-+.+....+ .
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~------~iy~~~~d~~~~~~~l~d~~~~~------------------------~ 88 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE------IIYINFDDLRLDRIELLDLLRAY------------------------I 88 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc------eEEEEecchhcchhhHHHHHHHH------------------------H
Confidence 88999999999999997766665432 45555333222111112222211 1
Q ss_pred hhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHH
Q 014789 135 RECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDM 214 (418)
Q Consensus 135 ~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~ 214 (418)
.... .....|+|||++.... .+..+..+.+.... ++++.|.+.... .......+..|. ..+.+.|++..|.
T Consensus 89 ~~~~--~~~~yifLDEIq~v~~-W~~~lk~l~d~~~~---~v~itgsss~ll-~~~~~~~L~GR~--~~~~l~PlSF~Ef 159 (398)
T COG1373 89 ELKE--REKSYIFLDEIQNVPD-WERALKYLYDRGNL---DVLITGSSSSLL-SKEISESLAGRG--KDLELYPLSFREF 159 (398)
T ss_pred Hhhc--cCCceEEEecccCchh-HHHHHHHHHccccc---eEEEECCchhhh-ccchhhhcCCCc--eeEEECCCCHHHH
Confidence 1100 0357899999998854 56677777775332 455555554322 223333444453 5688999999998
Q ss_pred HH
Q 014789 215 QR 216 (418)
Q Consensus 215 ~~ 216 (418)
..
T Consensus 160 l~ 161 (398)
T COG1373 160 LK 161 (398)
T ss_pred Hh
Confidence 65
No 265
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.37 E-value=1.9e-07 Score=80.40 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=31.2
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
.+.|.+.....+.-.. .+ +++++++||||||||++++.+...|..
T Consensus 4 dI~GQe~aKrAL~iAA----aG--~h~lLl~GppGtGKTmlA~~l~~lLP~ 48 (206)
T PF01078_consen 4 DIVGQEEAKRALEIAA----AG--GHHLLLIGPPGTGKTMLARRLPSLLPP 48 (206)
T ss_dssp CSSSTHHHHHHHHHHH----HC--C--EEEES-CCCTHHHHHHHHHHCS--
T ss_pred hhcCcHHHHHHHHHHH----cC--CCCeEEECCCCCCHHHHHHHHHHhCCC
Confidence 4678777776664432 33 579999999999999999999887764
No 266
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.35 E-value=1.5e-05 Score=65.07 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=25.4
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
.-.+.|+|+||+||||++..++..+...
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 4468999999999999999999999877
No 267
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.8e-05 Score=74.42 Aligned_cols=38 Identities=26% Similarity=0.391 Sum_probs=30.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCC
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHS 96 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~ 96 (418)
..++++.||+|+|||.+++.+++-+. +.++-.+|...+
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ld------VPfaIcDcTtLT 263 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLD------VPFAICDCTTLT 263 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhC------CCeEEecccchh
Confidence 56899999999999999999998875 445666776543
No 268
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2e-05 Score=75.73 Aligned_cols=137 Identities=20% Similarity=0.244 Sum_probs=81.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIE 132 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 132 (418)
-.++++.||||+|||+++-.++..- .|.+|.+-... ++. |.+...-...+..
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S------~FPFvKiiSpe-----~mi-----------------G~sEsaKc~~i~k 589 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSS------DFPFVKIISPE-----DMI-----------------GLSESAKCAHIKK 589 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhc------CCCeEEEeChH-----Hcc-----------------CccHHHHHHHHHH
Confidence 4578999999999999998877642 24455542211 110 0111112222333
Q ss_pred HHhhcCCCceEEEEEecchhhhhhc-------chhHHHHHH---hhhccCCCcEEEEEeccCCChHHHHHHHhhcccCce
Q 014789 133 MLRECGLAHKTIIFVLDEFDLFAQG-------KQRLLYSLL---DAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHR 202 (418)
Q Consensus 133 ~l~~~~~~~~~~viilDEid~l~~~-------~~~~L~~l~---~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~ 202 (418)
.+.... ++.-.+||+|+++.|.+- ...+|..|+ ........++.++|+|++.++.+.+ .+.+-|+ .
T Consensus 590 ~F~DAY-kS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m--~i~~~F~-~ 665 (744)
T KOG0741|consen 590 IFEDAY-KSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEM--GILDCFS-S 665 (744)
T ss_pred HHHHhh-cCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHc--CHHHhhh-h
Confidence 333322 346789999999988763 233344333 3222234578888988775444332 3445565 4
Q ss_pred EEEecCCCH-HHHHHHHHHH
Q 014789 203 KLLFLPPSK-EDMQRLLEHI 221 (418)
Q Consensus 203 ~i~~~~~~~-~e~~~il~~~ 221 (418)
.|++|.++. +++.+++...
T Consensus 666 ~i~Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 666 TIHVPNLTTGEQLLEVLEEL 685 (744)
T ss_pred eeecCccCchHHHHHHHHHc
Confidence 688998885 7888888774
No 269
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.28 E-value=1.9e-06 Score=81.57 Aligned_cols=105 Identities=15% Similarity=0.206 Sum_probs=62.6
Q ss_pred cCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCC-ChHhHHH
Q 014789 50 EACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMA-SFDDNSQ 128 (418)
Q Consensus 50 ~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~-~~~~~~~ 128 (418)
-+.+..++|.||+|+|||++++.+++.+...+.....++.+.+....+...+++.+...+-... +.... .......
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast---~d~p~~~~~~va~ 241 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVAST---FDEPASRHVQVAE 241 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEec---CCCChHHHHHHHH
Confidence 3567889999999999999999999988766433345566655544555566666532211110 00000 0011222
Q ss_pred HHHHHHhhcCCCceEEEEEecchhhhhhc
Q 014789 129 FMIEMLRECGLAHKTIIFVLDEFDLFAQG 157 (418)
Q Consensus 129 ~l~~~l~~~~~~~~~~viilDEid~l~~~ 157 (418)
.+.+..+.....++.+||++||++.+...
T Consensus 242 ~v~e~Ae~~~~~GkdVVLlIDEitR~arA 270 (415)
T TIGR00767 242 MVIEKAKRLVEHKKDVVILLDSITRLARA 270 (415)
T ss_pred HHHHHHHHHHHcCCCeEEEEEChhHHHHH
Confidence 33333333223468899999999999763
No 270
>PRK12608 transcription termination factor Rho; Provisional
Probab=98.25 E-value=4.6e-06 Score=78.46 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=65.1
Q ss_pred HHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccC-C
Q 014789 43 LVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKM-A 121 (418)
Q Consensus 43 ~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~ 121 (418)
.+...+.-+.+...+|+||||+|||++++.+++.+....+....++.+-+....+...+++.+...+.... .... .
T Consensus 123 vID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast---~de~~~ 199 (380)
T PRK12608 123 VVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST---FDRPPD 199 (380)
T ss_pred hhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeec---CCCCHH
Confidence 34444444678899999999999999999999988776533222222333445556666766665443211 0000 0
Q ss_pred ChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhh
Q 014789 122 SFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 122 ~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
........+.+..+.....++.+||++||+..+..
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A~ 234 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTRLAR 234 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHHH
Confidence 11111222333333333346899999999998865
No 271
>PRK13695 putative NTPase; Provisional
Probab=98.24 E-value=5.8e-06 Score=70.79 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=49.0
Q ss_pred eEEEEEecchhhhhhcc---hhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHH
Q 014789 142 KTIIFVLDEFDLFAQGK---QRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLL 218 (418)
Q Consensus 142 ~~~viilDEid~l~~~~---~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il 218 (418)
.+-++++||+..+.... .+.+..+++ .+..+|++++.. ....+-+++.++...+.+++.+-+.+++...+
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~------~~~~~i~v~h~~-~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~ 168 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLD------SEKPVIATLHRR-SVHPFVQEIKSRPGGRVYELTPENRDSLPFEI 168 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHh------CCCeEEEEECch-hhHHHHHHHhccCCcEEEEEcchhhhhHHHHH
Confidence 56779999965442222 233333332 345777888764 34456677888888788889998888887776
Q ss_pred HHHh
Q 014789 219 EHIL 222 (418)
Q Consensus 219 ~~~l 222 (418)
..++
T Consensus 169 ~~~~ 172 (174)
T PRK13695 169 LNRL 172 (174)
T ss_pred HHHH
Confidence 6654
No 272
>PHA00729 NTP-binding motif containing protein
Probab=98.23 E-value=2.1e-05 Score=69.09 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=26.1
Q ss_pred hcCCCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 49 TEACNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 49 ~~~~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
......+++|+|+||||||+++..++..+.
T Consensus 13 ~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 13 NNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred hcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445567899999999999999999999875
No 273
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.21 E-value=2.7e-05 Score=74.63 Aligned_cols=144 Identities=13% Similarity=0.198 Sum_probs=76.9
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhh---CCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLE---YPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQF 129 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~---~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 129 (418)
+..++++||+|+||||++..++..+... .+..+.++.+++........ ++..++.++ .++.....+.+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ-L~~~a~~lg----vpv~~~~~~~~---- 244 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ-IQTYGDIMG----IPVKAIESFKD---- 244 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH-HHHHhhcCC----cceEeeCcHHH----
Confidence 5678999999999999999999887643 23346677777655443222 333444332 22333333333
Q ss_pred HHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccC--CCcEEEEEeccCCChHHHHHHHhhcc---cCceEE
Q 014789 130 MIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSV--TSQAVVIGVSCRLDADQLLEKRVRSR---FSHRKL 204 (418)
Q Consensus 130 l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~--~~~~~lI~~s~~~~~~~~l~~~v~sr---~~~~~i 204 (418)
+...+... ...-+|+||++....... ..+..+..+.... .....+|..++.. ...+. .+..+ ++...+
T Consensus 245 l~~~L~~~---~~~DlVLIDTaGr~~~~~-~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~-~~~~~~~~~~~~~~ 317 (388)
T PRK12723 245 LKEEITQS---KDFDLVLVDTIGKSPKDF-MKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVK-EIFHQFSPFSYKTV 317 (388)
T ss_pred HHHHHHHh---CCCCEEEEcCCCCCccCH-HHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHH-HHHHHhcCCCCCEE
Confidence 33333332 246799999998875431 1233333332211 2234444443332 22233 22222 334567
Q ss_pred EecCCCHH
Q 014789 205 LFLPPSKE 212 (418)
Q Consensus 205 ~~~~~~~~ 212 (418)
.|..++..
T Consensus 318 I~TKlDet 325 (388)
T PRK12723 318 IFTKLDET 325 (388)
T ss_pred EEEeccCC
Confidence 77777743
No 274
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.18 E-value=3.5e-05 Score=68.65 Aligned_cols=144 Identities=16% Similarity=0.209 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhccc
Q 014789 38 SKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLF 117 (418)
Q Consensus 38 ~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~ 117 (418)
+.....+..++.. .....++||.|||||.+++.+++.+... ++-+||....+ ...+..|+..+...
T Consensus 19 ~r~~~~l~~al~~--~~~~~~~GpagtGKtetik~La~~lG~~------~~vfnc~~~~~-~~~l~ril~G~~~~----- 84 (231)
T PF12774_consen 19 DRCFLTLTQALSL--NLGGALSGPAGTGKTETIKDLARALGRF------VVVFNCSEQMD-YQSLSRILKGLAQS----- 84 (231)
T ss_dssp HHHHHHHHHHHCT--TTEEEEESSTTSSHHHHHHHHHHCTT--------EEEEETTSSS--HHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHhcc--CCCCCCcCCCCCCchhHHHHHHHHhCCe------EEEeccccccc-HHHHHHHHHHHhhc-----
Confidence 3344444455543 3445689999999999999999988753 47789988665 44566666554322
Q ss_pred ccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHH----hhhcc-------------CCCcEEEEE
Q 014789 118 SKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLL----DAMQS-------------VTSQAVVIG 180 (418)
Q Consensus 118 ~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~----~~~~~-------------~~~~~~lI~ 180 (418)
..-+++||++.+....-.++.+.+ +.... ......+..
T Consensus 85 -------------------------GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFi 139 (231)
T PF12774_consen 85 -------------------------GAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFI 139 (231)
T ss_dssp -------------------------T-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEE
T ss_pred -------------------------CchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEE
Confidence 357899999988765322332222 21111 112344444
Q ss_pred eccCCC-hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHh
Q 014789 181 VSCRLD-ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHIL 222 (418)
Q Consensus 181 ~s~~~~-~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l 222 (418)
+.|+.- -...+.+.+++-| |.+.+..++...+.+++-...
T Consensus 140 T~np~y~gr~~LP~nLk~lF--Rpvam~~PD~~~I~ei~L~s~ 180 (231)
T PF12774_consen 140 TMNPGYAGRSELPENLKALF--RPVAMMVPDLSLIAEILLLSQ 180 (231)
T ss_dssp EE-B-CCCC--S-HHHCTTE--EEEE--S--HHHHHHHHHHCC
T ss_pred eeccccCCcccCCHhHHHHh--heeEEeCCCHHHHHHHHHHHc
Confidence 555321 1245666777777 678898888888887776643
No 275
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=7.6e-05 Score=71.60 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=31.3
Q ss_pred CCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 30 SDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+.|.+.....+.-. ...+++++++||||||||++++.+...|.
T Consensus 181 V~GQ~~AKrAleiA------AAGgHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 181 VKGQEQAKRALEIA------AAGGHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred hcCcHHHHHHHHHH------HhcCCcEEEecCCCCchHHhhhhhcccCC
Confidence 45666555554332 22478999999999999999998877665
No 276
>PRK04296 thymidine kinase; Provisional
Probab=98.16 E-value=4.8e-06 Score=72.31 Aligned_cols=113 Identities=13% Similarity=0.129 Sum_probs=58.4
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEM 133 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 133 (418)
...+++||+|+|||+++..++..+.... ..++.++..... ......++++++..... . ......+.++.+.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g---~~v~i~k~~~d~--~~~~~~i~~~lg~~~~~-~-~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERG---MKVLVFKPAIDD--RYGEGKVVSRIGLSREA-I-PVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcC---CeEEEEeccccc--cccCCcEecCCCCcccc-e-EeCChHHHHHHHHh-
Confidence 3578999999999999999988876543 334444321111 11123344444321100 0 01122233333222
Q ss_pred HhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 134 LRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 134 l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
..+.+-+|+|||++.+.. +.+..+++.... ..+.+|.+...
T Consensus 75 -----~~~~~dvviIDEaq~l~~---~~v~~l~~~l~~--~g~~vi~tgl~ 115 (190)
T PRK04296 75 -----EGEKIDCVLIDEAQFLDK---EQVVQLAEVLDD--LGIPVICYGLD 115 (190)
T ss_pred -----hCCCCCEEEEEccccCCH---HHHHHHHHHHHH--cCCeEEEEecC
Confidence 134577999999987743 224455554332 33444444444
No 277
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=1.6e-05 Score=82.36 Aligned_cols=158 Identities=17% Similarity=0.247 Sum_probs=94.9
Q ss_pred CCCh-hhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhC-CC-----CeEEEEEccccCCChHHHH
Q 014789 30 SDSP-DSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEY-PD-----TISVIKLNGLLHSDDCCAF 102 (418)
Q Consensus 30 l~gr-~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~-~~-----~~~~v~in~~~~~~~~~~~ 102 (418)
+.|| ++++..+.+.|.+ ...+|-+|.|.||+|||.++.-+++.+.... +. ++.++.+-.....
T Consensus 188 vigr~deeirRvi~iL~R----rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aG------ 257 (898)
T KOG1051|consen 188 VIGRHDEEIRRVIEILSR----KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAG------ 257 (898)
T ss_pred ccCCchHHHHHHHHHHhc----cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccC------
Confidence 5677 9999998888754 2347888999999999999999999887543 21 1222222211111
Q ss_pred HHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchh----HHHHHHhhhccCCCcEEE
Q 014789 103 KEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQR----LLYSLLDAMQSVTSQAVV 178 (418)
Q Consensus 103 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~----~L~~l~~~~~~~~~~~~l 178 (418)
.....+....+.+++++....++.+|++|||++++...... ..-+++.. ......+.+
T Consensus 258 -----------------a~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp-~L~rg~l~~ 319 (898)
T KOG1051|consen 258 -----------------AKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKP-LLARGGLWC 319 (898)
T ss_pred -----------------cccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHHHhhHH-HHhcCCeEE
Confidence 11112233334444443322458999999999999987322 11122211 112345999
Q ss_pred EEeccCCChHHHH--HHHhhcccCceEEEecCCCHHHHHHH
Q 014789 179 IGVSCRLDADQLL--EKRVRSRFSHRKLLFLPPSKEDMQRL 217 (418)
Q Consensus 179 I~~s~~~~~~~~l--~~~v~sr~~~~~i~~~~~~~~e~~~i 217 (418)
||+|+...|.... +|.+..||.. +.++-++.++...|
T Consensus 320 IGatT~e~Y~k~iekdPalErrw~l--~~v~~pS~~~~~~i 358 (898)
T KOG1051|consen 320 IGATTLETYRKCIEKDPALERRWQL--VLVPIPSVENLSLI 358 (898)
T ss_pred EecccHHHHHHHHhhCcchhhCcce--eEeccCcccchhhh
Confidence 9999865554444 5788889953 45555554443333
No 278
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.12 E-value=0.00031 Score=68.45 Aligned_cols=118 Identities=15% Similarity=0.095 Sum_probs=66.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc--------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC-h
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE--------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD-D 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~--------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~-~ 98 (418)
..+..++..++.+.+.|...+.. ..+..++++|++|+||||++..++..+.... ..+..++|..... .
T Consensus 62 ~~~~~~~~~~~~v~~~L~~~l~~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g---~kV~lV~~D~~R~aa 138 (437)
T PRK00771 62 KGLTPREHVIKIVYEELVKLLGEETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKG---LKVGLVAADTYRPAA 138 (437)
T ss_pred ccCCcHHHHHHHHHHHHHHHhCCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHHcC---CeEEEecCCCCCHHH
Confidence 34555666677777777665543 2366788999999999999999999887643 3344444433321 1
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhh
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFA 155 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~ 155 (418)
...+..++.+++. ++.......+....+.+.+.... ..-+||||..-.+.
T Consensus 139 ~eQL~~la~~~gv----p~~~~~~~~d~~~i~~~al~~~~---~~DvVIIDTAGr~~ 188 (437)
T PRK00771 139 YDQLKQLAEKIGV----PFYGDPDNKDAVEIAKEGLEKFK---KADVIIVDTAGRHA 188 (437)
T ss_pred HHHHHHHHHHcCC----cEEecCCccCHHHHHHHHHHHhh---cCCEEEEECCCccc
Confidence 2233444444332 22111111122222333333322 12689999986554
No 279
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=98.12 E-value=0.00029 Score=65.91 Aligned_cols=42 Identities=26% Similarity=0.260 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 39 KLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 39 ~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
+|.+.+...-.+.....++|+|++|||||+++.++..-....
T Consensus 9 el~~~l~~~~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A~~~ 50 (309)
T PF10236_consen 9 ELINKLKEADKSSKNNRYVLTGERGSGKSVLLAQAVHYAREN 50 (309)
T ss_pred HHHHHHHHhcccCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 345566666566678899999999999999988877654443
No 280
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=0.0001 Score=64.77 Aligned_cols=153 Identities=10% Similarity=0.092 Sum_probs=96.5
Q ss_pred HHHHHhcCC-CceEEEECCCC-CchHHHHHHHHHHHhhhC---CCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccc
Q 014789 44 VSSSVTEAC-NNSILLLGPRG-SGKIAVLELILTDLLLEY---PDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFS 118 (418)
Q Consensus 44 l~~~~~~~~-~~~ill~G~~G-tGKT~l~~~~~~~l~~~~---~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~ 118 (418)
+...++.+. +++.++.|..+ +||..++..+.+.+.... +....+..+....... ...
T Consensus 5 L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~------------------~~~ 66 (263)
T PRK06581 5 LEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSAT------------------SNA 66 (263)
T ss_pred HHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEecccccc------------------ccC
Confidence 444455555 77788999998 999999998888775431 0001112221100000 000
Q ss_pred cCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhcc
Q 014789 119 KMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSR 198 (418)
Q Consensus 119 ~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr 198 (418)
...+.++ .+.+.+.+......++.-|++||++|.|.....+.|..+++. ++.+..+|.+|+. .+.+.|.++||
T Consensus 67 ~~I~Idq-IReL~~~l~~~p~~g~~KViII~~ae~mt~~AANALLKtLEE---PP~~t~fILit~~---~~~LLpTIrSR 139 (263)
T PRK06581 67 KNISIEQ-IRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILED---APKNSYIFLITSR---AASIISTIRSR 139 (263)
T ss_pred CcccHHH-HHHHHHHHhhCcccCCcEEEEEechHHhCHHHHHHHHHhhcC---CCCCeEEEEEeCC---hhhCchhHhhc
Confidence 1112222 233444454444567889999999999987655555555554 4477788887766 67888999999
Q ss_pred cCceEEEecCCCHHHHHHHHHHHhc
Q 014789 199 FSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 199 ~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
+ +.+.|..+......+....-+.
T Consensus 140 C--q~i~~~~p~~~~~~e~~~~~~~ 162 (263)
T PRK06581 140 C--FKINVRSSILHAYNELYSQFIQ 162 (263)
T ss_pred e--EEEeCCCCCHHHHHHHHHHhcc
Confidence 9 6799998888777777666543
No 281
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.11 E-value=2.2e-06 Score=72.53 Aligned_cols=70 Identities=14% Similarity=0.216 Sum_probs=33.8
Q ss_pred eEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHH
Q 014789 142 KTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQ 215 (418)
Q Consensus 142 ~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~ 215 (418)
.+-++||||+-.|--....+...+.++.. ++..+|++-.... ...+-+++++|-....+.+.+-+.+.+.
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~---s~~~vi~vv~~~~-~~~~l~~i~~~~~~~i~~vt~~NRd~l~ 164 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLD---SNKPVIGVVHKRS-DNPFLEEIKRRPDVKIFEVTEENRDALP 164 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHC---TTSEEEEE--SS---SCCHHHHHTTTTSEEEE--TTTCCCHH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHc---CCCcEEEEEecCC-CcHHHHHHHhCCCcEEEEeChhHHhhHh
Confidence 34599999998886655444444444444 2233555544431 1112345666644466778877766654
No 282
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.08 E-value=5e-05 Score=81.69 Aligned_cols=150 Identities=20% Similarity=0.286 Sum_probs=100.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 131 (418)
..-+++|-||+.+|||+++..+++.... ++|+||-..|++....+ -.-..... +..++.+ -.+.
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tgh------kfVRINNHEHTdlqeYi---GTyvTdd~-----G~lsFkE--GvLV 950 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGH------KFVRINNHEHTDLQEYI---GTYVTDDD-----GSLSFKE--GVLV 950 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCc------cEEEecCcccchHHHHh---hceeecCC-----Cceeeeh--hHHH
Confidence 3557999999999999999999988764 45999988888632222 11111111 1122222 1244
Q ss_pred HHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc-----------CCCcEEEEEeccCCChH---HHHHHHhhc
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS-----------VTSQAVVIGVSCRLDAD---QLLEKRVRS 197 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~-----------~~~~~~lI~~s~~~~~~---~~l~~~v~s 197 (418)
+.++. ..-||+||.....+..-++|..|+|-... +...+.+.++-|+.... .-|..+.+.
T Consensus 951 eAlR~------GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN 1024 (4600)
T COG5271 951 EALRR------GYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN 1024 (4600)
T ss_pred HHHhc------CcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh
Confidence 55544 45789999987777666788888764221 23456677777765322 356677788
Q ss_pred ccCceEEEecCCCHHHHHHHHHHHhcCC
Q 014789 198 RFSHRKLLFLPPSKEDMQRLLEHILSLP 225 (418)
Q Consensus 198 r~~~~~i~~~~~~~~e~~~il~~~l~~~ 225 (418)
|| -.++|.....+|+..||..|-+++
T Consensus 1025 RF--lE~hFddipedEle~ILh~rc~ia 1050 (4600)
T COG5271 1025 RF--LEMHFDDIPEDELEEILHGRCEIA 1050 (4600)
T ss_pred hh--HhhhcccCcHHHHHHHHhccCccC
Confidence 88 468999999999999999997643
No 283
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.07 E-value=8.6e-05 Score=73.62 Aligned_cols=218 Identities=18% Similarity=0.241 Sum_probs=115.5
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEM 133 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 133 (418)
-++||+|.||||||.+++.+.+.+... +|.+|...+.. +.... ..+.....+ .++
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg-------~yTSGkGsSav-----------GLTay--Vtrd~dtkq---lVL-- 517 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRG-------VYTSGKGSSAV-----------GLTAY--VTKDPDTRQ---LVL-- 517 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcc-------eeecCCccchh-----------cceee--EEecCccce---eee--
Confidence 479999999999999999887765432 66665443211 10000 000000000 000
Q ss_pred HhhcC-CCceEEEEEecchhhhhhcchhHHHHHHhhhc----------cCCCcEEEEEeccCCC--------hHH--HHH
Q 014789 134 LRECG-LAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ----------SVTSQAVVIGVSCRLD--------ADQ--LLE 192 (418)
Q Consensus 134 l~~~~-~~~~~~viilDEid~l~~~~~~~L~~l~~~~~----------~~~~~~~lI~~s~~~~--------~~~--~l~ 192 (418)
.... .-....+=+|||||+|....+.+|...++... ..+.+..|++++|+.. +.+ .|.
T Consensus 518 -esGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~Lp 596 (804)
T KOG0478|consen 518 -ESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLP 596 (804)
T ss_pred -ecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCC
Confidence 0000 00123466899999998878888888775432 1346778899999642 233 346
Q ss_pred HHhhcccCceEEEecCCCHHHHHHHHHHHhcC-CC------CCCCChHHHHHHHHHHHH----HhCChhHHHHHHHHhcc
Q 014789 193 KRVRSRFSHRKLLFLPPSKEDMQRLLEHILSL-PV------DSSLPHAYAVEFNKKIKN----ILADGRFKEIVNTLVNL 261 (418)
Q Consensus 193 ~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~-~~------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 261 (418)
|.+.|||....+-+.+.+...=..+..+.+.+ +. +..++..++..|..+-+. .+.+++.+.+.+.....
T Consensus 597 ptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~ 676 (804)
T KOG0478|consen 597 PTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDM 676 (804)
T ss_pred hhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhh
Confidence 88999997555666776633222333333221 11 111233344444333332 23344444444332221
Q ss_pred ----------ccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhc
Q 014789 262 ----------DSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSN 297 (418)
Q Consensus 262 ----------~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~ 297 (418)
+..+|++-.+.+.+-..+. ..+..+...+|.+|+.-
T Consensus 677 rk~~~~~~~itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l 723 (804)
T KOG0478|consen 677 RKIGEGAGQITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRL 723 (804)
T ss_pred hhhcccccccchhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 2245666666655433333 25667888888887653
No 284
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.06 E-value=1.4e-05 Score=80.81 Aligned_cols=243 Identities=14% Similarity=0.135 Sum_probs=133.8
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCC--------ceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACN--------NSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCC 100 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~--------~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~ 100 (418)
.+.|.+...+.|.=.|-.++...-+ -++||.|.||+|||.+++.+.+..+ ..+|.++...+..
T Consensus 287 sIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aP-------r~vytsgkgss~~-- 357 (682)
T COG1241 287 SIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAP-------RGVYTSGKGSSAA-- 357 (682)
T ss_pred cccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCC-------ceEEEcccccccc--
Confidence 6889888777776555444333212 4799999999999999999887654 3477776543321
Q ss_pred HHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcC-CCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------
Q 014789 101 AFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECG-LAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS-------- 171 (418)
Q Consensus 101 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~-------- 171 (418)
.|..........+ .| . |.... .-..+.|.+|||||.+.......+...++...-
T Consensus 358 -------GLTAav~rd~~tg-e~------~---LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~ 420 (682)
T COG1241 358 -------GLTAAVVRDKVTG-EW------V---LEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGIT 420 (682)
T ss_pred -------CceeEEEEccCCC-eE------E---EeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeeccccee
Confidence 0000000000000 00 0 00000 011356889999999987766666665543211
Q ss_pred --CCCcEEEEEeccCCC--------hHH--HHHHHhhcccCceEEEecCCCHHHHHH----HHHHHhc-CCCCC----CC
Q 014789 172 --VTSQAVVIGVSCRLD--------ADQ--LLEKRVRSRFSHRKLLFLPPSKEDMQR----LLEHILS-LPVDS----SL 230 (418)
Q Consensus 172 --~~~~~~lI~~s~~~~--------~~~--~l~~~v~sr~~~~~i~~~~~~~~e~~~----il~~~l~-~~~~~----~~ 230 (418)
.+++..+++++|+.- ..+ .|.+.+.|||..-.+....++.+.=.. ++..+.. .+... ..
T Consensus 421 atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~ 500 (682)
T COG1241 421 ATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGV 500 (682)
T ss_pred eecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccc
Confidence 234567778888742 223 346778999975444444555332233 3333321 11100 00
Q ss_pred ------ChHHHHHHHHHHHH----HhCChhHHHHHHHHhc-cc-------------cCHHHHHHHHHHHhhcccc-cCCC
Q 014789 231 ------PHAYAVEFNKKIKN----ILADGRFKEIVNTLVN-LD-------------STVNHLLRFLFLAVSYMDL-ESGF 285 (418)
Q Consensus 231 ------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~-------------gd~r~~~~~l~~a~~~a~~-~~~~ 285 (418)
+..++..|-.+-+. .++++ +.+.+...|- .. -.+|++-.+++.+-+.|.. -++.
T Consensus 501 ~~~~~~~~~~lrkYI~YAR~~v~P~lt~e-a~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~ 579 (682)
T COG1241 501 DEVEERDFELLRKYISYARKNVTPVLTEE-AREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDV 579 (682)
T ss_pred cccccCcHHHHHHHHHHHhccCCcccCHH-HHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhccCC
Confidence 34566666555443 22333 3344433332 11 1378888888877666653 6778
Q ss_pred CChhhHHHHHhcc
Q 014789 286 LSFENFKTALSNS 298 (418)
Q Consensus 286 it~~~v~~a~~~~ 298 (418)
|+.+|+.+|++-+
T Consensus 580 V~~eD~~eAi~lv 592 (682)
T COG1241 580 VEEEDVDEAIRLV 592 (682)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999998754
No 285
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.06 E-value=1.8e-05 Score=71.04 Aligned_cols=132 Identities=17% Similarity=0.166 Sum_probs=78.5
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCC---CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEAC---NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEI 105 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~---~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i 105 (418)
.+.|..-..+.|...++..+.++. |-.+-++|++||||..+.+.+++.+-...-... .+...
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~---------------~V~~f 147 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSP---------------FVHHF 147 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccch---------------hHHHh
Confidence 356666666667777777666654 334458999999999999999998765441110 11111
Q ss_pred HHHHHHhhhcccccCCChH----hHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc----CCCcEE
Q 014789 106 ARQLCMEHQLLFSKMASFD----DNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS----VTSQAV 177 (418)
Q Consensus 106 ~~~l~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~----~~~~~~ 177 (418)
...+. ++.....+ +....+.+.+... ...++|+||+|.|.+.--+.|.-+++-... ...+.+
T Consensus 148 vat~h------FP~~~~ie~Yk~eL~~~v~~~v~~C----~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaI 217 (344)
T KOG2170|consen 148 VATLH------FPHASKIEDYKEELKNRVRGTVQAC----QRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAI 217 (344)
T ss_pred hhhcc------CCChHHHHHHHHHHHHHHHHHHHhc----CCceEEechhhhcCHhHHHHHhhhhccccccccccccceE
Confidence 11110 11111111 2233344444443 567999999999988655666666663222 224788
Q ss_pred EEEeccCC
Q 014789 178 VIGVSCRL 185 (418)
Q Consensus 178 lI~~s~~~ 185 (418)
+|+.||.-
T Consensus 218 FIfLSN~g 225 (344)
T KOG2170|consen 218 FIFLSNAG 225 (344)
T ss_pred EEEEcCCc
Confidence 99999875
No 286
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.05 E-value=0.0004 Score=73.66 Aligned_cols=203 Identities=12% Similarity=0.062 Sum_probs=126.7
Q ss_pred CChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhh--hCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 31 DSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLL--EYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 31 ~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~--~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
+|.+.-++.+-+.|.. .....+=|+|..|.||||+++.+.+.... ..-+.+.||.++. .-+...+...|+..
T Consensus 161 VG~e~~~~kl~~~L~~----d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk--~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLME----DDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSK--EFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhcc----CCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcc--cccHHhHHHHHHHH
Confidence 8888888887777633 23467889999999999999999987752 1223366666664 33445677788887
Q ss_pred HHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCC-CcEEEEEeccCCCh
Q 014789 109 LCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVT-SQAVVIGVSCRLDA 187 (418)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~-~~~~lI~~s~~~~~ 187 (418)
++..... .......+....|...|+. +..+|++|++..= .....+..+.... ...-++.||...+
T Consensus 235 l~~~~~~--~~~~~~~~~~~~i~~~L~~-----krfllvLDDIW~~------~dw~~I~~~~p~~~~g~KvvlTTRs~~- 300 (889)
T KOG4658|consen 235 LGLLDEE--WEDKEEDELASKLLNLLEG-----KRFLLVLDDIWEE------VDWDKIGVPFPSRENGSKVVLTTRSEE- 300 (889)
T ss_pred hccCCcc--cchhhHHHHHHHHHHHhcc-----CceEEEEeccccc------ccHHhcCCCCCCccCCeEEEEEeccHh-
Confidence 7542200 0001123445556666653 6799999998642 1222223322222 3366777776532
Q ss_pred HHHHHHHhhcc-cC-ceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCH
Q 014789 188 DQLLEKRVRSR-FS-HRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTV 265 (418)
Q Consensus 188 ~~~l~~~v~sr-~~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~ 265 (418)
+..+ .+ ...+....++.++..+.+.....-. .. -+.+.+..++++++...|+.
T Consensus 301 -------V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~---~~---------------~~~~~i~~lak~v~~kC~GL 355 (889)
T KOG4658|consen 301 -------VCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPN---TL---------------GSHPDIEELAKEVAEKCGGL 355 (889)
T ss_pred -------hhhccccCCccccccccCccccHHHHHHhhccc---cc---------------cccccHHHHHHHHHHHhCCh
Confidence 3333 32 2346677788899998888875300 00 01223777888888888999
Q ss_pred HHHHHHHHHHhhc
Q 014789 266 NHLLRFLFLAVSY 278 (418)
Q Consensus 266 r~~~~~l~~a~~~ 278 (418)
..|+.++..+.+.
T Consensus 356 PLAl~viG~~ma~ 368 (889)
T KOG4658|consen 356 PLALNVLGGLLAC 368 (889)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999776543
No 287
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.05 E-value=6.1e-05 Score=74.46 Aligned_cols=214 Identities=17% Similarity=0.140 Sum_probs=123.3
Q ss_pred CChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHH
Q 014789 31 DSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLC 110 (418)
Q Consensus 31 ~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~ 110 (418)
++-+..++.+.......... .-++++.|.+||||-.+++.+-+.-. .. -.+|.+||...... .+ -+.+.
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~--~~pvll~GEtGtGKe~laraiH~~s~-~~---gpfvAvNCaAip~~--li---esELF 384 (606)
T COG3284 316 PLLDPSRATLLRKAERVAAT--DLPVLLQGETGTGKEVLARAIHQNSE-AA---GPFVAVNCAAIPEA--LI---ESELF 384 (606)
T ss_pred cccCHHHHHHHHHHHHHhhc--CCCeEecCCcchhHHHHHHHHHhccc-cc---CCeEEEEeccchHH--hh---hHHHh
Confidence 35666777777777665443 45799999999999999999887665 22 33588899776532 22 12221
Q ss_pred HhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc-------CCCcEEEEEecc
Q 014789 111 MEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS-------VTSQAVVIGVSC 183 (418)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~-------~~~~~~lI~~s~ 183 (418)
......+. ....+.....+.+ .....+|+|||..|.-.-|..|...+....- .+..+-||++|+
T Consensus 385 Gy~~GafT-----ga~~kG~~g~~~~----A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath 455 (606)
T COG3284 385 GYVAGAFT-----GARRKGYKGKLEQ----ADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATH 455 (606)
T ss_pred ccCccccc-----cchhcccccccee----cCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccC
Confidence 11100010 0000001111111 2456789999999988778877777754321 335778888887
Q ss_pred CCChHHHH-----HHHhhcccCceEEEecCCC-HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHH
Q 014789 184 RLDADQLL-----EKRVRSRFSHRKLLFLPPS-KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNT 257 (418)
Q Consensus 184 ~~~~~~~l-----~~~v~sr~~~~~i~~~~~~-~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (418)
. |+.... ...+.-|+..-.|.+||+. ..+....|.+.+.-..+.. .-++++....++.
T Consensus 456 ~-dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~--------------~~l~~~~~~~l~~- 519 (606)
T COG3284 456 R-DLAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWR--------------LQLDDDALARLLA- 519 (606)
T ss_pred c-CHHHHHHcCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCC--------------ccCCHHHHHHHHh-
Confidence 6 544433 3445567766678899986 2222222222222000011 1123333333333
Q ss_pred HhccccCHHHHHHHHHHHhhcccc
Q 014789 258 LVNLDSTVNHLLRFLFLAVSYMDL 281 (418)
Q Consensus 258 ~~~~~gd~r~~~~~l~~a~~~a~~ 281 (418)
+...||+|.+.++++.+...++.
T Consensus 520 -~~WPGNirel~~v~~~~~~l~~~ 542 (606)
T COG3284 520 -YRWPGNIRELDNVIERLAALSDG 542 (606)
T ss_pred -CCCCCcHHHHHHHHHHHHHcCCC
Confidence 44579999999999998777553
No 288
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.01 E-value=5.6e-07 Score=85.05 Aligned_cols=243 Identities=18% Similarity=0.171 Sum_probs=115.5
Q ss_pred CCCChhhhHHHHHHHHHHHHhcC--------CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEA--------CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCC 100 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~--------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~ 100 (418)
.+.|.+.....|.=.|-...... ..-++||.|.||+|||.+++.+.+.. +..+++++...+...
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~-------pr~v~~~g~~~s~~g- 96 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA-------PRSVYTSGKGSSAAG- 96 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT--------SSEEEEECCGSTCCC-
T ss_pred cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhC-------CceEEECCCCcccCC-
Confidence 57787766555433332222221 13489999999999999999775432 334677765543210
Q ss_pred HHHHHHHHHHHhhhcccccCCChH-hHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------
Q 014789 101 AFKEIARQLCMEHQLLFSKMASFD-DNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS-------- 171 (418)
Q Consensus 101 ~~~~i~~~l~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~-------- 171 (418)
|........ ....+. +.-.. .+. ...|.+|||+|.+.......|+..++...-
T Consensus 97 --------Lta~~~~d~-~~~~~~leaGal---vla------d~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~ 158 (331)
T PF00493_consen 97 --------LTASVSRDP-VTGEWVLEAGAL---VLA------DGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIV 158 (331)
T ss_dssp --------CCEEECCCG-GTSSECEEE-HH---HHC------TTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSE
T ss_pred --------ccceecccc-ccceeEEeCCch---hcc------cCceeeecccccccchHHHHHHHHHHcCeeccchhhhc
Confidence 000000000 000000 00000 111 245899999999987666777776653211
Q ss_pred --CCCcEEEEEeccCCChH--------H--HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCC-------------
Q 014789 172 --VTSQAVVIGVSCRLDAD--------Q--LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPV------------- 226 (418)
Q Consensus 172 --~~~~~~lI~~s~~~~~~--------~--~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~------------- 226 (418)
.+.+..|++++|+..-. + .+.+.+.|||..-.+-..+++.+.=..+.++-+....
T Consensus 159 ~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~ 238 (331)
T PF00493_consen 159 TTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKN 238 (331)
T ss_dssp EEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SS
T ss_pred ccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEecccccccccccccccc
Confidence 23578899999975310 1 3566788999743333466665444444444443110
Q ss_pred CCCCChHHHHHHHHHHH----HHhCChhHHHHHHHHhcccc------------CHHHHHHHHHHHhhccc-ccCCCCChh
Q 014789 227 DSSLPHAYAVEFNKKIK----NILADGRFKEIVNTLVNLDS------------TVNHLLRFLFLAVSYMD-LESGFLSFE 289 (418)
Q Consensus 227 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g------------d~r~~~~~l~~a~~~a~-~~~~~it~~ 289 (418)
...++..++..|-...+ -.++++ ..+.+...|...+ .+|.+..+++.|-+.|. .-+..|+.+
T Consensus 239 ~~~~~~~~lr~yI~yar~~~~P~ls~e-a~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~ 317 (331)
T PF00493_consen 239 DKPISEDLLRKYIAYARQNIHPVLSEE-AKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEE 317 (331)
T ss_dssp S-TT-HCCCHHHHHHHHHHC--EE-HH-CHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHH
T ss_pred CCccCHHHHHHHHHHHHhhcccccCHH-HHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHH
Confidence 01234445555544444 223333 3555555543211 34555555555544443 256789999
Q ss_pred hHHHHHhcc
Q 014789 290 NFKTALSNS 298 (418)
Q Consensus 290 ~v~~a~~~~ 298 (418)
|+..|+.-+
T Consensus 318 Dv~~Ai~L~ 326 (331)
T PF00493_consen 318 DVEEAIRLF 326 (331)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987643
No 289
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.00 E-value=4.1e-05 Score=66.27 Aligned_cols=119 Identities=18% Similarity=0.056 Sum_probs=61.6
Q ss_pred eEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh-------ccc----ccCCCh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-------LLF----SKMASF 123 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-------~~~----~~~~~~ 123 (418)
.++|+||||||||+++..++....... ..+++++... +...+.. -+.+++.... ... +...+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g---~~v~~~s~e~--~~~~~~~-~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~ 74 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG---EPGLYVTLEE--SPEELIE-NAESLGWDLERLEDEGLLAIVDADPDEIGP 74 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC---CcEEEEECCC--CHHHHHH-HHHHcCCChHHHHhcCCeEEEecCccccch
Confidence 368999999999999999887765443 3455665432 2222332 2333332110 000 000011
Q ss_pred H------hHHHHHHHHHhhcCCCceEEEEEecchhhhhh---c-chhHHHHHHhhhccCCCcEEEEEeccCC
Q 014789 124 D------DNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQ---G-KQRLLYSLLDAMQSVTSQAVVIGVSCRL 185 (418)
Q Consensus 124 ~------~~~~~l~~~l~~~~~~~~~~viilDEid~l~~---~-~~~~L~~l~~~~~~~~~~~~lI~~s~~~ 185 (418)
. +....+...+.. ..+-++|||++..+.. . ....+..++..... .++.+|.++...
T Consensus 75 ~~~~~~~~~~~~i~~~~~~----~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~--~g~tvi~v~~~~ 140 (187)
T cd01124 75 AESSLRLELIQRLKDAIEE----FKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR--FGVTTLLTSEQS 140 (187)
T ss_pred hhhhhhHHHHHHHHHHHHH----hCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH--CCCEEEEEeccc
Confidence 1 122333333333 2578999999988765 2 23344455544332 244566666543
No 290
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.00 E-value=0.00024 Score=61.81 Aligned_cols=148 Identities=16% Similarity=0.167 Sum_probs=75.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIE 132 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 132 (418)
|..+++.||+|+||||++-+++..+... +.++..+..+...... ..-++..++.++.+.-. ........+......+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga-~eQL~~~a~~l~vp~~~-~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGA-VEQLKTYAEILGVPFYV-ARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHH-HHHHHHHHHHHTEEEEE-SSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccH-HHHHHHHHHHhccccch-hhcchhhHHHHHHHHH
Confidence 4568899999999999999999988876 4456666555444332 23455556555433100 0011123333333333
Q ss_pred HHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccCCCcEEEEEeccCCChHHHHH--HHhhcccCceEEEecC
Q 014789 133 MLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLE--KRVRSRFSHRKLLFLP 208 (418)
Q Consensus 133 ~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~--~~v~sr~~~~~i~~~~ 208 (418)
.+... ..-+|+||-.-..... ....+..+++.. ....+.+|..++.. .+.++ .+..+.+....+.|..
T Consensus 78 ~~~~~----~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~--~~~~~~LVlsa~~~--~~~~~~~~~~~~~~~~~~lIlTK 149 (196)
T PF00448_consen 78 KFRKK----GYDLVLIDTAGRSPRDEELLEELKKLLEAL--NPDEVHLVLSATMG--QEDLEQALAFYEAFGIDGLILTK 149 (196)
T ss_dssp HHHHT----TSSEEEEEE-SSSSTHHHHHHHHHHHHHHH--SSSEEEEEEEGGGG--GHHHHHHHHHHHHSSTCEEEEES
T ss_pred HHhhc----CCCEEEEecCCcchhhHHHHHHHHHHhhhc--CCccceEEEecccC--hHHHHHHHHHhhcccCceEEEEe
Confidence 33321 2348899976544322 123344444443 23455666555442 22222 1223444445677877
Q ss_pred CCH
Q 014789 209 PSK 211 (418)
Q Consensus 209 ~~~ 211 (418)
++.
T Consensus 150 lDe 152 (196)
T PF00448_consen 150 LDE 152 (196)
T ss_dssp TTS
T ss_pred ecC
Confidence 763
No 291
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.98 E-value=2.9e-05 Score=73.35 Aligned_cols=104 Identities=17% Similarity=0.251 Sum_probs=57.0
Q ss_pred HhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccC-CChHhH
Q 014789 48 VTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKM-ASFDDN 126 (418)
Q Consensus 48 ~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-~~~~~~ 126 (418)
+.-+.+...+|.||||+|||++++.+++.+...+.....++.+.+..... ..++.+++... ...+.. .+....
T Consensus 164 ~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~E----VtdiqrsIlg~--vv~st~d~~~~~~ 237 (416)
T PRK09376 164 APIGKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEE----VTDMQRSVKGE--VVASTFDEPAERH 237 (416)
T ss_pred cccccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhH----HHHHHHHhcCc--EEEECCCCCHHHH
Confidence 34456888999999999999999999998877643323344443332222 23333333211 111111 111111
Q ss_pred HH---HHHHHHhhcCCCceEEEEEecchhhhhhc
Q 014789 127 SQ---FMIEMLRECGLAHKTIIFVLDEFDLFAQG 157 (418)
Q Consensus 127 ~~---~l~~~l~~~~~~~~~~viilDEid~l~~~ 157 (418)
.. ...+..+.....+..++|++||++.+...
T Consensus 238 ~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 238 VQVAEMVIEKAKRLVEHGKDVVILLDSITRLARA 271 (416)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEChHHHHHH
Confidence 11 11121111112457899999999998764
No 292
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.98 E-value=0.00039 Score=64.09 Aligned_cols=218 Identities=17% Similarity=0.150 Sum_probs=122.2
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
+.+++.+..+..+...-+...- -..+++|.|.+||||-.+++.+-..-.... -.++-+||....... +- +
T Consensus 204 ~~~v~~S~~mk~~v~qA~k~Am--lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~---~pFlalNCA~lPe~~-aE----s 273 (511)
T COG3283 204 EQIVAVSPKMKHVVEQAQKLAM--LDAPLLITGETGTGKDLLAKACHLASPRHS---KPFLALNCASLPEDA-AE----S 273 (511)
T ss_pred HHHhhccHHHHHHHHHHHHhhc--cCCCeEEecCCCchHHHHHHHHhhcCcccC---CCeeEeecCCCchhH-hH----H
Confidence 4577788777777666555422 245799999999999999997654333322 446778997765421 11 1
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhc--------cCCCcEEEE
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ--------SVTSQAVVI 179 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~--------~~~~~~~lI 179 (418)
.+.... + + .+-...+++.. ....+++|||-.+++.-|..|..++.-.. ....++-||
T Consensus 274 ElFG~a---p----g-~~gk~GffE~A-------ngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVI 338 (511)
T COG3283 274 ELFGHA---P----G-DEGKKGFFEQA-------NGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVI 338 (511)
T ss_pred HHhcCC---C----C-CCCccchhhhc-------cCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEE
Confidence 121110 0 0 00011122221 34568999999999986665655553221 122477888
Q ss_pred EeccCCChHHHHH-----HHhhcccCceEEEecCCC--HHHHHHHHHHHhc-------CCCCCCCChHHHHHHHHHHHHH
Q 014789 180 GVSCRLDADQLLE-----KRVRSRFSHRKLLFLPPS--KEDMQRLLEHILS-------LPVDSSLPHAYAVEFNKKIKNI 245 (418)
Q Consensus 180 ~~s~~~~~~~~l~-----~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~-------~~~~~~~~~~~~~~~~~~~~~~ 245 (418)
++|.. ++.+... ..+.-|+.--.+++||+. .+++....+..+. .+.+ .
T Consensus 339 catq~-nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~p-----------------k 400 (511)
T COG3283 339 CATQV-NLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRP-----------------K 400 (511)
T ss_pred ecccc-cHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCC-----------------c
Confidence 88765 4444433 233445543346778875 3344443333322 1111 1
Q ss_pred hCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHH
Q 014789 246 LADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFK 292 (418)
Q Consensus 246 ~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~ 292 (418)
++++ +...+.+ +...|++|++.+.+.+|+..++. ..++.+++.
T Consensus 401 l~~~-~~~~L~~-y~WpGNVRqL~N~iyRA~s~~Eg--~~l~i~~i~ 443 (511)
T COG3283 401 LAAD-LLTVLTR-YAWPGNVRQLKNAIYRALTLLEG--YELRIEDIL 443 (511)
T ss_pred cCHH-HHHHHHH-cCCCccHHHHHHHHHHHHHHhcc--Cccchhhcc
Confidence 1222 2233332 45689999999999999887643 346666654
No 293
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.95 E-value=5.5e-05 Score=72.35 Aligned_cols=90 Identities=20% Similarity=0.214 Sum_probs=54.2
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh-cccccCCChHhHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-LLFSKMASFDDNSQFMI 131 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~~l~ 131 (418)
+..++|+|+||+|||+++..++..+.... ..++|+++... ..+ +..-++.++.... ..... ....+.+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g---~~VlYvs~EEs--~~q-i~~Ra~rlg~~~~~l~l~~----e~~le~I~ 151 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRG---GKVLYVSGEES--PEQ-IKLRADRLGISTENLYLLA----ETNLEDIL 151 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcC---CeEEEEECCcC--HHH-HHHHHHHcCCCcccEEEEc----cCcHHHHH
Confidence 56788999999999999999998876543 45678876432 222 2222333432110 00001 12234445
Q ss_pred HHHhhcCCCceEEEEEecchhhhhh
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
+.+.. .++-+||||+++.+..
T Consensus 152 ~~i~~----~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 152 ASIEE----LKPDLVIIDSIQTVYS 172 (372)
T ss_pred HHHHh----cCCcEEEEcchHHhhc
Confidence 54543 2578999999998853
No 294
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.95 E-value=3.4e-05 Score=80.57 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=107.0
Q ss_pred eEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEML 134 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 134 (418)
.++++||||+|||+.+..+++.+. +.++..|+....+...+...+....+.. +.........
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g------~~v~E~Nas~~RSk~~l~~~~~~~~~s~---------si~~~~~~~~--- 420 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELG------FKVVEKNASDVRSKKELLNKLGNATSSH---------SIKGSKKKKG--- 420 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcc------cceeecCccccccccHHHhhhhcccccc---------chhhhhcccc---
Confidence 478999999999999999998876 5679999887776555554444432211 1111100000
Q ss_pred hhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHH
Q 014789 135 RECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDM 214 (418)
Q Consensus 135 ~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~ 214 (418)
......+...||++||+|-+.......+..+...+.....+ +|+++|+.+.+. .+-.++-. ..++|..++.+++
T Consensus 421 ~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~ks~~P--iv~~cndr~~p~---sr~~~~~~-~~l~f~kP~~~~i 494 (871)
T KOG1968|consen 421 NRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKKSSRP--LVCTCNDRNLPK---SRALSRAC-SDLRFSKPSSELI 494 (871)
T ss_pred cccccccceeEEEEeccccccchhhhhHHHHHHHHHhccCC--eEEEecCCCCcc---ccchhhhc-ceeeecCCcHHHH
Confidence 00011235679999999999886555566665555533344 556666654332 11222321 3588999999888
Q ss_pred HHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHH
Q 014789 215 QRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFL 274 (418)
Q Consensus 215 ~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~ 274 (418)
..-+..... .+ ...+++..+.++.... .||+|..+..+..
T Consensus 495 ~~ri~si~~---se--------------~~ki~~~~l~~~s~~~---~~DiR~~i~~lq~ 534 (871)
T KOG1968|consen 495 RSRIMSICK---SE--------------GIKISDDVLEEISKLS---GGDIRQIIMQLQF 534 (871)
T ss_pred Hhhhhhhhc---cc--------------ceecCcHHHHHHHHhc---ccCHHHHHHHHhh
Confidence 877776543 11 1124556666666543 6899998877753
No 295
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.94 E-value=0.00022 Score=63.79 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=53.2
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH-HHHh-hhcccccCCChHhHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ-LCME-HQLLFSKMASFDDNSQFM 130 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~-l~~~-~~~~~~~~~~~~~~~~~l 130 (418)
+..+.|+|+||+|||+++..++....... ..++|+++. ..++ .-+.++... .... .+.......+..+..+.+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~---~~v~yi~~e-~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 97 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNG---KKVIYIDTE-GLSP-ERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAI 97 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEECC-CCCH-HHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHH
Confidence 55778999999999999999988765443 556788776 2222 233444432 1100 011111223333333222
Q ss_pred HHHHhhcCCCceEEEEEecchhhhh
Q 014789 131 IEMLRECGLAHKTIIFVLDEFDLFA 155 (418)
Q Consensus 131 ~~~l~~~~~~~~~~viilDEid~l~ 155 (418)
........ .++-++|||.+..+.
T Consensus 98 ~~~~~~~~--~~~~lvVIDsi~al~ 120 (225)
T PRK09361 98 RKAEKLAK--ENVGLIVLDSATSLY 120 (225)
T ss_pred HHHHHHHH--hcccEEEEeCcHHHh
Confidence 22211110 367899999998664
No 296
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.92 E-value=2.2e-05 Score=73.70 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=44.5
Q ss_pred CCCChhhhHHHHHHHHHHHHhcC--CCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEA--CNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~--~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
.++|-++.++++.+++.....+. ....++|.||||+|||++++.+++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 68899999999999999987642 3466789999999999999999999876
No 297
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.92 E-value=0.00011 Score=67.15 Aligned_cols=125 Identities=19% Similarity=0.184 Sum_probs=66.3
Q ss_pred HhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcc-cccCCChH--
Q 014789 48 VTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLL-FSKMASFD-- 124 (418)
Q Consensus 48 ~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~-- 124 (418)
...+...+++|.||+|+||||+++.++..+....+ .+.+++....... --.++......-.+.. ..+..-.+
T Consensus 106 ~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G----~i~~~g~~v~~~d-~~~ei~~~~~~~~q~~~~~r~~v~~~~ 180 (270)
T TIGR02858 106 VRNNRVLNTLIISPPQCGKTTLLRDLARILSTGIS----QLGLRGKKVGIVD-ERSEIAGCVNGVPQHDVGIRTDVLDGC 180 (270)
T ss_pred HhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCCCc----eEEECCEEeecch-hHHHHHHHhcccccccccccccccccc
Confidence 33444578999999999999999999988765432 2555554443110 1123333221111000 00000000
Q ss_pred hHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHH
Q 014789 125 DNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQ 189 (418)
Q Consensus 125 ~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~ 189 (418)
.....+...+... .|-++++||+. ....+..+++... ....+|+++...++.+
T Consensus 181 ~k~~~~~~~i~~~----~P~villDE~~-----~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 181 PKAEGMMMLIRSM----SPDVIVVDEIG-----REEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred hHHHHHHHHHHhC----CCCEEEEeCCC-----cHHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 0122233444332 58899999964 2344555555433 3567888887655433
No 298
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.87 E-value=9.7e-05 Score=67.14 Aligned_cols=109 Identities=19% Similarity=0.187 Sum_probs=75.2
Q ss_pred CCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhH
Q 014789 172 VTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRF 251 (418)
Q Consensus 172 ~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (418)
.++.+++||+|+..+ ...+.+.+.||+ +.+.|.|++.+++..+++..+......+. ..-.++++ +
T Consensus 5 E~G~i~LIGATTENP-~f~vn~ALlSR~--~v~~l~~L~~~di~~il~ral~~~~~~~~-----------~~~~i~~~-a 69 (300)
T PRK14700 5 ESGKIILIGATTENP-TYYLNDALVSRL--FILRLKRLSLVATQKLIEKALSQDEVLAK-----------HKFKIDDG-L 69 (300)
T ss_pred cCCcEEEEeecCCCc-cceecHhhhhhh--heeeecCCCHHHHHHHHHHHHHhhhccCC-----------cCCCcCHH-H
Confidence 357899999999876 456789999999 78999999999999999998751100000 00013343 3
Q ss_pred HHHHHHHhccccCHHHHHHHHHHHhhcccc-cCCCCChhhHHHHHhc
Q 014789 252 KEIVNTLVNLDSTVNHLLRFLFLAVSYMDL-ESGFLSFENFKTALSN 297 (418)
Q Consensus 252 ~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~-~~~~it~~~v~~a~~~ 297 (418)
...+... ..||+|.+++.+..|+..... +...||.+++.+++..
T Consensus 70 l~~ia~~--a~GDaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~ 114 (300)
T PRK14700 70 YNAMHNY--NEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAVGE 114 (300)
T ss_pred HHHHHHh--cCCHHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhH
Confidence 3444433 359999999999997753321 2224999999887653
No 299
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.86 E-value=0.00024 Score=66.64 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=33.6
Q ss_pred hhhhHHHHHHHHHHHHhcCC--CceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 33 PDSNYSKLKFLVSSSVTEAC--NNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~--~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
-++.++.+.+++..++.+.. ...++++|+.|+|||++++.+..-+..
T Consensus 54 d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~ 102 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGD 102 (304)
T ss_pred CHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHhCh
Confidence 33457777777777766633 345679999999999999866655543
No 300
>PHA02774 E1; Provisional
Probab=97.86 E-value=0.00011 Score=72.68 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 36 NYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 36 e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
++..+...|...+++.+ .++++|+||||||||+++..+++.+.
T Consensus 416 ~~~~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 416 EFISFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred cHHHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34445556666666554 47899999999999999999999885
No 301
>PRK14974 cell division protein FtsY; Provisional
Probab=97.85 E-value=0.00065 Score=63.98 Aligned_cols=96 Identities=17% Similarity=0.094 Sum_probs=51.4
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC-hHHHHHHHHHHHHHhhhcccccCCChHhHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD-DCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 131 (418)
+..++++|++|+||||++..++..+.... ..++.+++..... ....++..+..++.... ....+...........
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g---~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~-~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNG---FSVVIAAGDTFRAGAIEQLEEHAERLGVKVI-KHKYGADPAAVAYDAI 215 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcC---CeEEEecCCcCcHHHHHHHHHHHHHcCCcee-cccCCCCHHHHHHHHH
Confidence 56788999999999999999998887643 4455566544332 11223334444432210 0011122222211111
Q ss_pred HHHhhcCCCceEEEEEecchhhhhh
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
+..... ..-+|+||....+..
T Consensus 216 ~~~~~~----~~DvVLIDTaGr~~~ 236 (336)
T PRK14974 216 EHAKAR----GIDVVLIDTAGRMHT 236 (336)
T ss_pred HHHHhC----CCCEEEEECCCccCC
Confidence 222221 234999999987754
No 302
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.83 E-value=0.00014 Score=67.18 Aligned_cols=109 Identities=19% Similarity=0.220 Sum_probs=66.4
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 131 (418)
.+..+|++|+-|.|||.++..+.+.+..... .-.-...+...+.+.+..-.+. + +-...+.
T Consensus 64 ~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k-----------~R~HFh~FM~~vH~~l~~l~g~------~--dpl~~iA 124 (367)
T COG1485 64 PVRGLYLWGGVGRGKTMLMDLFYESLPGERK-----------RRLHFHRFMARVHQRLHTLQGQ------T--DPLPPIA 124 (367)
T ss_pred CCceEEEECCCCccHHHHHHHHHhhCCcccc-----------ccccHHHHHHHHHHHHHHHcCC------C--CccHHHH
Confidence 4688999999999999999999988764321 1111234556666655433211 0 1111222
Q ss_pred HHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
+.+. +..-||++|||+-=...+--+|..|++..- ...+++|+|||..+
T Consensus 125 ~~~~-----~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf--~~GV~lvaTSN~~P 172 (367)
T COG1485 125 DELA-----AETRVLCFDEFEVTDIADAMILGRLLEALF--ARGVVLVATSNTAP 172 (367)
T ss_pred HHHH-----hcCCEEEeeeeeecChHHHHHHHHHHHHHH--HCCcEEEEeCCCCh
Confidence 2222 245799999987544334456666665432 25789999999853
No 303
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.83 E-value=0.00044 Score=68.03 Aligned_cols=244 Identities=14% Similarity=0.165 Sum_probs=121.8
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCC--------CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEAC--------NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCC 100 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~--------~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~ 100 (418)
.++|.+.....+.-.|-..+.... --++||+|.||||||-.++.+.+.-.+ .|...|...+..
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~R-------AV~tTGqGASav-- 520 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPR-------AVFTTGQGASAV-- 520 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcc-------eeEeccCCcccc--
Confidence 688888888777776655443322 236999999999999999988765432 244444332211
Q ss_pred HHHHHHHHHHHhh-hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhh----------
Q 014789 101 AFKEIARQLCMEH-QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAM---------- 169 (418)
Q Consensus 101 ~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~---------- 169 (418)
.|.... +-|..+-...+. ..|-- ....|-+|||||.+...+..-+..-++..
T Consensus 521 -------GLTa~v~KdPvtrEWTLEa------GALVL----ADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIV 583 (854)
T KOG0477|consen 521 -------GLTAYVRKDPVTREWTLEA------GALVL----ADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIV 583 (854)
T ss_pred -------ceeEEEeeCCccceeeecc------CeEEE----ccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHH
Confidence 000000 000000000000 00000 01345689999999775333332222110
Q ss_pred ccCCCcEEEEEeccC--------CChHH--HHHHHhhcccCceEEE---ecCCCHHHHHHHH-HHHhc-CCCC-------
Q 014789 170 QSVTSQAVVIGVSCR--------LDADQ--LLEKRVRSRFSHRKLL---FLPPSKEDMQRLL-EHILS-LPVD------- 227 (418)
Q Consensus 170 ~~~~~~~~lI~~s~~--------~~~~~--~l~~~v~sr~~~~~i~---~~~~~~~e~~~il-~~~l~-~~~~------- 227 (418)
........+|+++|+ ..|.+ .|...+.|||..-.+. +.|...+.+.+.+ ..... -|..
T Consensus 584 tsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~ 663 (854)
T KOG0477|consen 584 TSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLE 663 (854)
T ss_pred HHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCccc
Confidence 112357789999998 34444 4456788999732222 3444444554433 33332 1111
Q ss_pred --------CCCChHHHHHHHHHHHHHhCCh-------hHHHHH---HHHhcccc----CHHHHHHHHHHHhhcccc-cCC
Q 014789 228 --------SSLPHAYAVEFNKKIKNILADG-------RFKEIV---NTLVNLDS----TVNHLLRFLFLAVSYMDL-ESG 284 (418)
Q Consensus 228 --------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~~~g----d~r~~~~~l~~a~~~a~~-~~~ 284 (418)
..++...+.+|--+.+..+-+. .+..+. ++-.-.+| ..|.+..+++-+-+.|.. -+.
T Consensus 664 e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~ 743 (854)
T KOG0477|consen 664 EPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLRE 743 (854)
T ss_pred ccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 1134556666644433322211 122111 11112356 666666666644444432 455
Q ss_pred CCChhhHHHHHhcc
Q 014789 285 FLSFENFKTALSNS 298 (418)
Q Consensus 285 ~it~~~v~~a~~~~ 298 (418)
.|+.+|+..|+.-+
T Consensus 744 ~V~~~d~~~AI~v~ 757 (854)
T KOG0477|consen 744 YVTEEDVDMAIRVM 757 (854)
T ss_pred hccHhHHHHHHHHH
Confidence 77888877776544
No 304
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.79 E-value=0.00028 Score=63.51 Aligned_cols=125 Identities=14% Similarity=0.207 Sum_probs=64.1
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh-------ccc-----cc
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-------LLF-----SK 119 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-------~~~-----~~ 119 (418)
.+..++|+|+||+|||+++.+++....... -.++|+.... ++..+++++ .+++.... ..+ ..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g---~~~~y~~~e~--~~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQG---KKVYVITTEN--TSKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCC---CEEEEEEcCC--CHHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 367788999999999999999976643332 4556666532 333344332 33321110 000 00
Q ss_pred ----CCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-chhHHHHHHhhhcc-CCCcEEEEEeccCCC
Q 014789 120 ----MASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-KQRLLYSLLDAMQS-VTSQAVVIGVSCRLD 186 (418)
Q Consensus 120 ----~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-~~~~L~~l~~~~~~-~~~~~~lI~~s~~~~ 186 (418)
.....+..+.+.+.+.+ .++-+++||++-.+... ....+..+++.... ......++.+++...
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~----~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~ 166 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKS----KREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYA 166 (234)
T ss_pred cccCcchHHHHHHHHHHHHHh----cCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCc
Confidence 11223444455555543 25679999999866442 22333333222211 112345555555443
No 305
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.79 E-value=0.00021 Score=63.05 Aligned_cols=95 Identities=18% Similarity=0.264 Sum_probs=55.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHh--hhcccccCCChHhH---H
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCME--HQLLFSKMASFDDN---S 127 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~~---~ 127 (418)
+..+.|+||||+|||+++..++....... ..++|+++.. -++. -+.+++...... .+.......+..+. .
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g---~~v~yi~~e~-~~~~-rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQG---KKVVYIDTEG-LSPE-RFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECCC-CCHH-HHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 56778999999999999999988775543 5678888765 2332 344444432110 11111122233333 3
Q ss_pred HHHHHHHhhcCCCceEEEEEecchhhhhh
Q 014789 128 QFMIEMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 128 ~~l~~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
..+.+.+.. ..+-+||||-+..+..
T Consensus 87 ~~l~~~~~~----~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 87 QKTSKFIDR----DSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHhh----cCccEEEEeCcHHHhH
Confidence 333333332 2578999999997753
No 306
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.78 E-value=0.00016 Score=71.17 Aligned_cols=245 Identities=15% Similarity=0.154 Sum_probs=131.2
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCC--------CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEAC--------NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCC 100 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~--------~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~ 100 (418)
.+.|.+....-|.=.|-..+.... --+++|.|.||+|||-++++++.-+ ++.+|+.|...+..
T Consensus 346 sIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fs-------PR~vYtsGkaSSaA-- 416 (764)
T KOG0480|consen 346 SIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFS-------PRSVYTSGKASSAA-- 416 (764)
T ss_pred cccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccC-------CcceEecCcccccc--
Confidence 678888877776655544433221 3579999999999999999988754 44578877554321
Q ss_pred HHHHHHHHHHHhhhcccccCCChHhHHHHHHH--HHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc-------
Q 014789 101 AFKEIARQLCMEHQLLFSKMASFDDNSQFMIE--MLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS------- 171 (418)
Q Consensus 101 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~--~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~------- 171 (418)
.|.... .....+.+ ...+ .|- -....|=.|||||++..+.|..+..-++...-
T Consensus 417 -------GLTaaV---vkD~esgd----f~iEAGALm----LADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv 478 (764)
T KOG0480|consen 417 -------GLTAAV---VKDEESGD----FTIEAGALM----LADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGV 478 (764)
T ss_pred -------cceEEE---EecCCCCc----eeeecCcEE----EccCceEEechhcccChHhHHHHHHHHHhheehheecce
Confidence 010000 00000000 0000 000 01235779999999988777777666543211
Q ss_pred ---CCCcEEEEEeccCCC--------hHH--HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc----CCC--C--CCC
Q 014789 172 ---VTSQAVVIGVSCRLD--------ADQ--LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS----LPV--D--SSL 230 (418)
Q Consensus 172 ---~~~~~~lI~~s~~~~--------~~~--~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~----~~~--~--~~~ 230 (418)
.+.+..+++++|+.. +.+ .+.+.+.|||..-.|-+...+...=..|-++-+. +.. . ..+
T Consensus 479 ~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~ 558 (764)
T KOG0480|consen 479 VATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVY 558 (764)
T ss_pred EEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccc
Confidence 234566788888752 222 3467788999865566666654333333333322 111 1 123
Q ss_pred ChHHHHHHHHHHHHH---hCChhHHHHHHHH---hcc--c--------cCHHHHHHHHHHHhhcccc-cCCCCChhhHHH
Q 014789 231 PHAYAVEFNKKIKNI---LADGRFKEIVNTL---VNL--D--------STVNHLLRFLFLAVSYMDL-ESGFLSFENFKT 293 (418)
Q Consensus 231 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~--~--------gd~r~~~~~l~~a~~~a~~-~~~~it~~~v~~ 293 (418)
+-+-+..|-...+.+ ++.++-..+.... ... . =..|++-.+++.+=+.|.. -.+.+|.+|+.+
T Consensus 559 ~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~e 638 (764)
T KOG0480|consen 559 TLEQVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEE 638 (764)
T ss_pred cHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHH
Confidence 434444443333322 2222222222221 111 1 1577777777664444432 456899999999
Q ss_pred HHhccCC
Q 014789 294 ALSNSHR 300 (418)
Q Consensus 294 a~~~~~~ 300 (418)
|.+-+..
T Consensus 639 a~eLlk~ 645 (764)
T KOG0480|consen 639 AVELLKK 645 (764)
T ss_pred HHHHHHh
Confidence 9876543
No 307
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.78 E-value=0.00068 Score=60.35 Aligned_cols=150 Identities=16% Similarity=0.237 Sum_probs=80.2
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH-HHHhhhcccccCCChHhH----H
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ-LCMEHQLLFSKMASFDDN----S 127 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~-l~~~~~~~~~~~~~~~~~----~ 127 (418)
+-.++|.|++|||||+++..++..+...+ ..+++-+...... ....++.. +.... .....+.. .
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f----~~I~l~t~~~n~~--~~~~i~p~~i~~~~-----~~e~le~~l~~~k 81 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKF----DHIFLITPEYNNE--YYKYIWPDHIFKVF-----DKEELEYILIRQK 81 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccC----CEEEEEecCCchh--hhhhcchhhccccc-----cHHHHHHHHHHHH
Confidence 55899999999999999999998877654 2333333222211 22222211 10000 00001111 1
Q ss_pred HHHHHHHhhc--CCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEE
Q 014789 128 QFMIEMLREC--GLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLL 205 (418)
Q Consensus 128 ~~l~~~l~~~--~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~ 205 (418)
+.+.+..... .+...+.+||+|++-.- ...+..+..++.-... .++.+|.++.. ...+.+.+++-.. ..+.
T Consensus 82 ~~I~k~~~k~~~~k~~~~~LiIlDD~~~~-~~k~~~l~~~~~~gRH--~~is~i~l~Q~---~~~lp~~iR~n~~-y~i~ 154 (241)
T PF04665_consen 82 EKIEKYIKKSPQKKNNPRFLIILDDLGDK-KLKSKILRQFFNNGRH--YNISIIFLSQS---YFHLPPNIRSNID-YFII 154 (241)
T ss_pred HHHHHHhhhhcccCCCCCeEEEEeCCCCc-hhhhHHHHHHHhcccc--cceEEEEEeee---cccCCHHHhhcce-EEEE
Confidence 1222232211 11245899999997531 1144567777654332 45667766654 3445666766554 2344
Q ss_pred ecCCCHHHHHHHHHHH
Q 014789 206 FLPPSKEDMQRLLEHI 221 (418)
Q Consensus 206 ~~~~~~~e~~~il~~~ 221 (418)
+ +.+..++..|++..
T Consensus 155 ~-~~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 155 F-NNSKRDLENIYRNM 169 (241)
T ss_pred e-cCcHHHHHHHHHhc
Confidence 5 57888888777765
No 308
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.78 E-value=0.00047 Score=58.78 Aligned_cols=106 Identities=21% Similarity=0.302 Sum_probs=59.3
Q ss_pred eEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcc-----ccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNG-----LLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQF 129 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~-----~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~ 129 (418)
-++++|+||+|||+.++.+++.|..+.. .++.+.. ........++++.......+. ....
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~---~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks------------~~rl 67 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIW---RVIHLEKDYLRGILWDESLPILKEVYRESFLKS------------VERL 67 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhh---hccccchhhhhheecccccchHHHHHHHHHHHH------------HHHH
Confidence 5789999999999999999999987752 2222221 000011112333333221111 1112
Q ss_pred HHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 130 MIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 130 l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
|...++ ..++|.|+..+..+ .=|+|.-....-....++|-...+.+
T Consensus 68 ldSalk-------n~~VIvDdtNYyks----mRrqL~ceak~~~tt~ciIyl~~plD 113 (261)
T COG4088 68 LDSALK-------NYLVIVDDTNYYKS----MRRQLACEAKERKTTWCIIYLRTPLD 113 (261)
T ss_pred HHHHhc-------ceEEEEecccHHHH----HHHHHHHHHHhcCCceEEEEEccCHH
Confidence 222232 46889999888744 44444444433446788888877643
No 309
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.77 E-value=0.00014 Score=71.56 Aligned_cols=90 Identities=20% Similarity=0.250 Sum_probs=54.2
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-hcccccCCChHhHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-QLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~l~ 131 (418)
+..++|+|+||+|||+++..++..+.... ..++|+.+... ... +..-++.++... ...... +..++.+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g---~~vlYvs~Ees--~~q-i~~ra~rlg~~~~~l~~~~----e~~l~~i~ 149 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAG---GKVLYVSGEES--ASQ-IKLRAERLGLPSDNLYLLA----ETNLEAIL 149 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEcccc--HHH-HHHHHHHcCCChhcEEEeC----CCCHHHHH
Confidence 55788999999999999999998876432 45778876432 222 222244443211 011111 11234444
Q ss_pred HHHhhcCCCceEEEEEecchhhhhh
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
+.+++ .++-+||||++..+..
T Consensus 150 ~~i~~----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 150 ATIEE----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred HHHHh----hCCCEEEEechhhhcc
Confidence 55543 2577999999998764
No 310
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.77 E-value=0.00023 Score=66.37 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=57.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-hcccccCCChHhHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-QLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~l~ 131 (418)
+..+.|+||||||||+++..++....... -.++++++....++ ..+++++... ........+.++.+..+.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g---~~v~yId~E~~~~~-----~~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAG---GTAAFIDAEHALDP-----VYARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEcccchhHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 55778999999999999999887776543 44577876543332 2345554322 112223334455555444
Q ss_pred HHHhhcCCCceEEEEEecchhhhhh
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
..+++ +.+.+||||-+..+.+
T Consensus 127 ~li~~----~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 127 TLVRS----GAVDIIVVDSVAALVP 147 (321)
T ss_pred HHhhc----cCCcEEEEcchhhhcc
Confidence 44433 3578999999988764
No 311
>PRK10536 hypothetical protein; Provisional
Probab=97.77 E-value=0.00033 Score=62.68 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=30.6
Q ss_pred CCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHH
Q 014789 30 SDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
+.++......+...+ .. ...++++||+|||||+++.+++...
T Consensus 57 i~p~n~~Q~~~l~al----~~--~~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 57 ILARNEAQAHYLKAI----ES--KQLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred ccCCCHHHHHHHHHH----hc--CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 445666666555544 22 3489999999999999999988753
No 312
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.76 E-value=0.00013 Score=74.26 Aligned_cols=124 Identities=16% Similarity=0.191 Sum_probs=62.2
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh-cccc----cC-CChHhH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-LLFS----KM-ASFDDN 126 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-~~~~----~~-~~~~~~ 126 (418)
.+..+|+|+||||||+++..++..+..........+.+.+.... +-..+.+.++.... .+.+ .. ......
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgk----AA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~T 242 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGK----AAARLTESLGKALRQLPLTDEQKKRIPEEAST 242 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHH----HHHHHHHHHHhhhhccccchhhhhcCCCchHH
Confidence 45789999999999999999998875532111223433322221 22333333321100 0000 00 001111
Q ss_pred HHHHHHHHhhc----CCCce---EEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 127 SQFMIEMLREC----GLAHK---TIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 127 ~~~l~~~l~~~----~~~~~---~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
...++..-... ..... .-+|||||+-.+. ...++.|++... ...++++||-.+-
T Consensus 243 iHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd---~~lm~~ll~al~-~~~rlIlvGD~~Q 303 (615)
T PRK10875 243 LHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD---LPMMARLIDALP-PHARVIFLGDRDQ 303 (615)
T ss_pred HHHHhCcCCCccchhhccccCCCCCeEEEChHhccc---HHHHHHHHHhcc-cCCEEEEecchhh
Confidence 11221110000 00112 2499999998774 367788877644 3468888885543
No 313
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.76 E-value=0.00019 Score=67.03 Aligned_cols=116 Identities=17% Similarity=0.265 Sum_probs=64.1
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhccc------ccCCChHhH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLF------SKMASFDDN 126 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~------~~~~~~~~~ 126 (418)
+..+||||..|||||++...+...+..-.. -.-++. +.++..+.+.++.-..... +.+..+ +-
T Consensus 114 PkGlYlYG~VGcGKTmLMDlFy~~~~~i~r--kqRvHF--------h~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~-Dp 182 (467)
T KOG2383|consen 114 PKGLYLYGSVGCGKTMLMDLFYDALPPIWR--KQRVHF--------HGFMLSVHKRMHELKQEQGAEKPGYAKSWEI-DP 182 (467)
T ss_pred CceEEEecccCcchhHHHHHHhhcCCchhh--hhhhhH--------HHHHHHHHHHHHHHHHhccccCccccccccC-Cc
Confidence 678999999999999999988765543110 001111 2344444444322110001 111011 11
Q ss_pred HHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 127 SQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 127 ~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
...+.+.+.. ...+|++|||+--.-.+--+|..|+...- +..++++++||+.+
T Consensus 183 l~~vA~eIa~-----ea~lLCFDEfQVTDVADAmiL~rLf~~Lf--~~GvVlvATSNR~P 235 (467)
T KOG2383|consen 183 LPVVADEIAE-----EAILLCFDEFQVTDVADAMILKRLFEHLF--KNGVVLVATSNRAP 235 (467)
T ss_pred cHHHHHHHhh-----hceeeeechhhhhhHHHHHHHHHHHHHHH--hCCeEEEEeCCCCh
Confidence 2222222222 36899999997654444456666665432 35789999999964
No 314
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.74 E-value=0.00043 Score=62.00 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=32.8
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEI 105 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i 105 (418)
.+..++|+|++|||||+++..++..+.... ..++|+.... ++..+++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g---~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG---YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC---CcEEEEeCCC--CHHHHHHHH
Confidence 356889999999999999877766654332 4457776333 334455554
No 315
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.74 E-value=0.00017 Score=64.45 Aligned_cols=136 Identities=17% Similarity=0.112 Sum_probs=78.5
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC-----hHHHHHHHHHHHHHhhh--cccccCCCh
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD-----DCCAFKEIARQLCMEHQ--LLFSKMASF 123 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~-----~~~~~~~i~~~l~~~~~--~~~~~~~~~ 123 (418)
.++..+-|.|++||||||+.+.++.-.....+ .+++++..... ...-+.+++..++.... ..++.-.|-
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G----~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSG 112 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSG----EILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSG 112 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc----eEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCc
Confidence 35778889999999999999999887664433 36666654321 12234455555543221 111211222
Q ss_pred HhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-chhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHh
Q 014789 124 DDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-KQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRV 195 (418)
Q Consensus 124 ~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v 195 (418)
.+.++......-. -.|-++|.||.-..... -|..+.+|+...+. ..++..+++|.+......+.+++
T Consensus 113 GQrQRi~IARALa----l~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~isdri 180 (268)
T COG4608 113 GQRQRIGIARALA----LNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYISDRI 180 (268)
T ss_pred hhhhhHHHHHHHh----hCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhhcccE
Confidence 2333322222222 26899999998877765 44444444433332 25678899998877666655544
No 316
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.74 E-value=0.00011 Score=64.78 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.5
Q ss_pred CceEEEECCCCCchHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELIL 74 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~ 74 (418)
+..++|||+||+|||++++.+.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 5679999999999999998763
No 317
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.73 E-value=5.8e-05 Score=66.70 Aligned_cols=127 Identities=15% Similarity=0.102 Sum_probs=61.3
Q ss_pred CceEEEECCCCCchHHHHHHHHHH--HhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD--LLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFM 130 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 130 (418)
++.++|+||.|+|||++++.++.. +.... . ++ .+....- ..+.++...++.... ......++...++.+
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G-~---~v--~a~~~~~--~~~d~i~~~l~~~~s-i~~~~S~f~~el~~l 99 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIG-S---FV--PADSATI--GLVDKIFTRMSSRES-VSSGQSAFMIDLYQV 99 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHHhCC-C---ee--EcCCcEE--eeeeeeeeeeCCccC-hhhccchHHHHHHHH
Confidence 367999999999999999998843 22211 0 01 0100000 011111111111100 001112333344444
Q ss_pred HHHHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccC-CCcEEEEEeccCCChHHHH
Q 014789 131 IEMLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSV-TSQAVVIGVSCRLDADQLL 191 (418)
Q Consensus 131 ~~~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~-~~~~~lI~~s~~~~~~~~l 191 (418)
...+... ..+.+++|||+..-... ....+..+++..... .....+|.+|...++.+.+
T Consensus 100 ~~~l~~~---~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 100 SKALRLA---TRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred HHHHHhC---CCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 4444433 36889999998765532 234444454433222 1234677778765544443
No 318
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.72 E-value=0.00038 Score=61.04 Aligned_cols=53 Identities=17% Similarity=0.151 Sum_probs=36.5
Q ss_pred eEEEEEecchhhhhhc-chhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHh
Q 014789 142 KTIIFVLDEFDLFAQG-KQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRV 195 (418)
Q Consensus 142 ~~~viilDEid~l~~~-~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v 195 (418)
.|-+||+||.=...+. .|..+.+++..... ..++.++.+|.+....+.+-+++
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~-~~~lt~l~IsHdl~~v~~~cdRi 212 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKK-ERGLTYLFISHDLALVEHMCDRI 212 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHH-hcCceEEEEeCcHHHHHHHhhhe
Confidence 6889999997665554 56666666654332 36789999998877666655543
No 319
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.71 E-value=0.00028 Score=61.19 Aligned_cols=30 Identities=27% Similarity=0.224 Sum_probs=25.9
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
....+.++.||||+||||+++-+++-+...
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~g 164 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSDG 164 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhcc
Confidence 345679999999999999999999988754
No 320
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.71 E-value=0.00039 Score=66.65 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=22.2
Q ss_pred ceEEEECCCCCchHHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
..++|.|.||||||.++-.++..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 357899999999999999999998
No 321
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.70 E-value=0.00028 Score=73.97 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=59.2
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIE 132 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 132 (418)
.+.++|.|+||||||++++.+...+.... ..++.+. .+. ..+..|....+.. ..+.... +..
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~g---~~V~~~A---pTg------~Aa~~L~~~~g~~---a~Ti~~~---~~~ 429 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAAG---YRVIGAA---LSG------KAAEGLQAESGIE---SRTLASL---EYA 429 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhCC---CeEEEEe---CcH------HHHHHHHhccCCc---eeeHHHH---Hhh
Confidence 35788999999999999999988776543 3333221 111 1112222111100 0011111 111
Q ss_pred HHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEec
Q 014789 133 MLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVS 182 (418)
Q Consensus 133 ~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s 182 (418)
.-.........-+|||||+-.+.. ..+..|++.......++++||=.
T Consensus 430 ~~~~~~~~~~~~llIvDEasMv~~---~~~~~Ll~~~~~~~~kliLVGD~ 476 (744)
T TIGR02768 430 WANGRDLLSDKDVLVIDEAGMVGS---RQMARVLKEAEEAGAKVVLVGDP 476 (744)
T ss_pred hccCcccCCCCcEEEEECcccCCH---HHHHHHHHHHHhcCCEEEEECCh
Confidence 111111123567999999988754 45677777655556788888843
No 322
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.70 E-value=0.00033 Score=65.32 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=58.1
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-hcccccCCChHhHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-QLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~l~ 131 (418)
+..+.|+||||+|||+++..++....... -.++++++....++ ..+++++... ...+....+.++.+..+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g---~~~vyId~E~~~~~-----~~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLG---GTVAFIDAEHALDP-----VYAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC---CCEEEECccccHHH-----HHHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 55677999999999999999887766543 34677876443332 2344444321 122333345555555554
Q ss_pred HHHhhcCCCceEEEEEecchhhhhh
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
..+++ +.+.+||||-+-.+.+
T Consensus 127 ~li~s----~~~~lIVIDSvaal~~ 147 (325)
T cd00983 127 SLVRS----GAVDLIVVDSVAALVP 147 (325)
T ss_pred HHHhc----cCCCEEEEcchHhhcc
Confidence 44433 3578999999887764
No 323
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.70 E-value=0.00027 Score=63.31 Aligned_cols=122 Identities=16% Similarity=0.220 Sum_probs=72.7
Q ss_pred CCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHH
Q 014789 30 SDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQL 109 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 109 (418)
+..|...++...+.++.... ....++++.||+|.|||.+++.+.+.-...+.-.-.+|.+||.....+. .+..++-.+
T Consensus 186 iatrnp~fnrmieqierva~-rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~-amsalfghv 263 (531)
T COG4650 186 IATRNPHFNRMIEQIERVAI-RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDT-AMSALFGHV 263 (531)
T ss_pred ccccChHHHHHHHHHHHHHh-hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCch-HHHHHHhhh
Confidence 44455555555555555432 2345799999999999999999886544433223567999998876532 333333322
Q ss_pred HHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHh
Q 014789 110 CMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLD 167 (418)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~ 167 (418)
... +.+ ..+. -..+|+.. ...++++||+..+....|..|..-++
T Consensus 264 kga----ftg---a~~~---r~gllrsa----dggmlfldeigelgadeqamllkaie 307 (531)
T COG4650 264 KGA----FTG---ARES---REGLLRSA----DGGMLFLDEIGELGADEQAMLLKAIE 307 (531)
T ss_pred ccc----ccc---chhh---hhhhhccC----CCceEehHhhhhcCccHHHHHHHHHH
Confidence 111 111 1111 12233332 36689999999998877777666554
No 324
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00019 Score=67.48 Aligned_cols=140 Identities=18% Similarity=0.185 Sum_probs=84.2
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 131 (418)
++..++|-|.||.||||++-+++..+.... .+.|+.+..... -++--++.|+... ..-..-.+...+.|.
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~----~vLYVsGEES~~---QiklRA~RL~~~~---~~l~l~aEt~~e~I~ 161 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARLAKRG----KVLYVSGEESLQ---QIKLRADRLGLPT---NNLYLLAETNLEDII 161 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHHHhcC----cEEEEeCCcCHH---HHHHHHHHhCCCc---cceEEehhcCHHHHH
Confidence 366788999999999999999999988653 578998866532 2333444454221 001112234455666
Q ss_pred HHHhhcCCCceEEEEEecchhhhhhcc-----------hhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccC
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQGK-----------QRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFS 200 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~~~-----------~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~ 200 (418)
..+.+. +|-++|||-|+.+.... .+.-..|.++....+..+.+||--+... ..--|++...+-
T Consensus 162 ~~l~~~----~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHVTKeG--~IAGPrvLEHmV 235 (456)
T COG1066 162 AELEQE----KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHVTKEG--AIAGPRVLEHMV 235 (456)
T ss_pred HHHHhc----CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEEcccc--cccCchheeeee
Confidence 666653 69999999999887641 2344556666655556667777544311 122344444443
Q ss_pred ceEEEec
Q 014789 201 HRKLLFL 207 (418)
Q Consensus 201 ~~~i~~~ 207 (418)
...++|+
T Consensus 236 DtVlyFE 242 (456)
T COG1066 236 DTVLYFE 242 (456)
T ss_pred eEEEEEe
Confidence 3334443
No 325
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.69 E-value=0.00066 Score=53.64 Aligned_cols=53 Identities=15% Similarity=0.028 Sum_probs=39.3
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCC---CceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEAC---NNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~---~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
.+.|.+-..+.+...+...+.++. +-.+-+.|++|||||.+++.+++.+-...
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G 81 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSG 81 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcc
Confidence 466777666667777766665543 33445899999999999999999977654
No 326
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.67 E-value=0.00057 Score=60.32 Aligned_cols=42 Identities=31% Similarity=0.381 Sum_probs=31.9
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD 97 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~ 97 (418)
++..+++.||+||||||+++.+-+-+....+ .+++|+....+
T Consensus 26 ~gef~vliGpSGsGKTTtLkMINrLiept~G----~I~i~g~~i~~ 67 (309)
T COG1125 26 EGEFLVLIGPSGSGKTTTLKMINRLIEPTSG----EILIDGEDISD 67 (309)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhcccCCCCc----eEEECCeeccc
Confidence 4667889999999999999977665554333 48888877665
No 327
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.67 E-value=0.0008 Score=61.16 Aligned_cols=33 Identities=33% Similarity=0.393 Sum_probs=26.0
Q ss_pred EEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEc
Q 014789 56 ILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLN 91 (418)
Q Consensus 56 ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in 91 (418)
++|+|+||+||||+++.+++.+.... ..++.++
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~---~~v~~i~ 34 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKN---IDVIILG 34 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcC---CceEEEc
Confidence 68999999999999999999887543 3344443
No 328
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.67 E-value=0.00082 Score=54.45 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=22.6
Q ss_pred eEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
+++|+||+|+|||+++-.++..+...
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~ 27 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS 27 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc
Confidence 68999999999999999888877654
No 329
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.64 E-value=0.0029 Score=60.05 Aligned_cols=90 Identities=18% Similarity=0.242 Sum_probs=52.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh-hhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL-LEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFM 130 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~-~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 130 (418)
+++.+.|.||+|+||||++-.++.... .....++.++-.++....... -++..++-+ +.++.-..++.+..+.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~E-QLk~Ya~im----~vp~~vv~~~~el~~ai 276 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVE-QLKTYADIM----GVPLEVVYSPKELAEAI 276 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHH-HHHHHHHHh----CCceEEecCHHHHHHHH
Confidence 477889999999999999988888777 222345777777776655321 122222222 23333334444444443
Q ss_pred HHHHhhcCCCceEEEEEecchhh
Q 014789 131 IEMLRECGLAHKTIIFVLDEFDL 153 (418)
Q Consensus 131 ~~~l~~~~~~~~~~viilDEid~ 153 (418)
.. +.. .-+|++|=+-.
T Consensus 277 ~~-l~~------~d~ILVDTaGr 292 (407)
T COG1419 277 EA-LRD------CDVILVDTAGR 292 (407)
T ss_pred HH-hhc------CCEEEEeCCCC
Confidence 33 222 24788886643
No 330
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=97.60 E-value=0.00023 Score=66.53 Aligned_cols=142 Identities=15% Similarity=0.196 Sum_probs=74.1
Q ss_pred HHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC-hHHHHHHHHHHHH---------Hhhhc
Q 014789 46 SSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD-DCCAFKEIARQLC---------MEHQL 115 (418)
Q Consensus 46 ~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~-~~~~~~~i~~~l~---------~~~~~ 115 (418)
++.....+..++|-|.||||||+++-.+++.+.++.+ +.|++-....+ .+..+-++-..+. .....
T Consensus 3 ~FF~~~~G~TLLIKG~PGTGKTtfaLelL~~l~~~~~----v~YISTRVd~d~vy~~y~~~~~~i~~~~vlDatQd~~~~ 78 (484)
T PF07088_consen 3 RFFTQEPGQTLLIKGEPGTGKTTFALELLNSLKDHGN----VMYISTRVDQDTVYEMYPWIEESIDPTNVLDATQDPFEL 78 (484)
T ss_pred hhhcCCCCcEEEEecCCCCCceeeehhhHHHHhccCC----eEEEEeccCHHHHHHhhhhhccccChhhhhhhccchhhc
Confidence 3456677899999999999999999999999987753 35665442221 1111111111111 00000
Q ss_pred ccccCCCh-HhHHHHHHHHHhhcCCCceEEEEEecc----hhhhhhc---chh---HHHHHHhhhccCCCcEEEEEeccC
Q 014789 116 LFSKMASF-DDNSQFMIEMLRECGLAHKTIIFVLDE----FDLFAQG---KQR---LLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 116 ~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~viilDE----id~l~~~---~~~---~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
+......+ .-..+.+.+.+++........+|++|- ++.+..+ .++ +..+|.........++++|.-+..
T Consensus 79 ~~~~~vp~~~l~~ds~~~f~~~i~~~~k~~iI~~DSWdaiieyla~~~~~~ed~e~l~~dLv~lard~g~~LIlVsEsa~ 158 (484)
T PF07088_consen 79 PLDKDVPFERLDIDSFRDFVDKINEAGKKPIIAFDSWDAIIEYLAEEHDEPEDIETLTNDLVELARDMGINLILVSESAE 158 (484)
T ss_pred cccccCcccccCHHHHHHHHHHhhhcccCcEEEEecHHHHHHHhhhhhcCcHHHHHHHHHHHHHHhhcCceEEEEEecCC
Confidence 00011111 011233333343222234678999999 7777754 333 223333333445567777766655
Q ss_pred CChHHHH
Q 014789 185 LDADQLL 191 (418)
Q Consensus 185 ~~~~~~l 191 (418)
....+++
T Consensus 159 ~~~LdYi 165 (484)
T PF07088_consen 159 NEPLDYI 165 (484)
T ss_pred CCcchhe
Confidence 4444444
No 331
>PRK09354 recA recombinase A; Provisional
Probab=97.59 E-value=0.00063 Score=64.02 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=58.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-hcccccCCChHhHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-QLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~l~ 131 (418)
+..+.|+||+|||||+++..++....... -.++|++.....++ ..+++++... ........+.++.+..+.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G---~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAG---GTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 55677999999999999999887766543 45678877554433 3445554332 122223334555555544
Q ss_pred HHHhhcCCCceEEEEEecchhhhhh
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
..+++ +.+.+||||-+-.+.+
T Consensus 132 ~li~s----~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 132 TLVRS----GAVDLIVVDSVAALVP 152 (349)
T ss_pred HHhhc----CCCCEEEEeChhhhcc
Confidence 44433 3678999999988764
No 332
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.00041 Score=61.29 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=23.3
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
..+..+-|.||+||||||+++.++--..
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3467888999999999999998876544
No 333
>PRK10263 DNA translocase FtsK; Provisional
Probab=97.58 E-value=0.0027 Score=68.36 Aligned_cols=166 Identities=15% Similarity=0.222 Sum_probs=87.2
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhC-CCCeEEEEEccccC----------------CCh---HHHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEY-PDTISVIKLNGLLH----------------SDD---CCAFKEIARQLCME 112 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~-~~~~~~v~in~~~~----------------~~~---~~~~~~i~~~l~~~ 112 (418)
.+++||.|.+|+|||++++.++-.+.... +..+.++-+++... ++. ..+++.+...+...
T Consensus 1010 ~PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~vELs~ye~LPHl~~~VvtD~eka~~aLr~lV~EMeRR 1089 (1355)
T PRK10263 1010 MPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERR 1089 (1355)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCccchhhhccCccccceeecCHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999887665433 44466666654421 111 11223333333221
Q ss_pred hhcccc-cCCChHhHHHHHHHHHhhc--------------------CCCceEEEEEecchhhhhhc-chhHHHHHHhhhc
Q 014789 113 HQLLFS-KMASFDDNSQFMIEMLREC--------------------GLAHKTIIFVLDEFDLFAQG-KQRLLYSLLDAMQ 170 (418)
Q Consensus 113 ~~~~~~-~~~~~~~~~~~l~~~l~~~--------------------~~~~~~~viilDEid~l~~~-~~~~L~~l~~~~~ 170 (418)
....-. +..+...+-+.+.+.-+.. ...-.++||||||+..|... ..++-..+.++.+
T Consensus 1090 y~Lla~~GVrnI~~YN~k~~e~~r~grp~pd~~~~~g~s~~~~~p~l~~LP~IVVIIDE~AdLm~~~~kevE~lI~rLAq 1169 (1355)
T PRK10263 1090 YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQ 1169 (1355)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhhccccccccccccccccccccccccCCCeEEEEEcChHHHHhhhhHHHHHHHHHHHH
Confidence 110000 0011111111111100000 00124589999999777643 2222222223332
Q ss_pred c-CCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHH
Q 014789 171 S-VTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEH 220 (418)
Q Consensus 171 ~-~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~ 220 (418)
. -...+.+|.+|.+.+ .+.+...+++-|. .+|.|.--+..+-..||..
T Consensus 1170 kGRAaGIHLILATQRPs-vDVItg~IKAN~p-tRIAfrVsS~~DSrtILd~ 1218 (1355)
T PRK10263 1170 KARAAGIHLVLATQRPS-VDVITGLIKANIP-TRIAFTVSSKIDSRTILDQ 1218 (1355)
T ss_pred HhhhcCeEEEEEecCcc-cccchHHHHhhcc-ceEEEEcCCHHHHHHhcCC
Confidence 2 135788999998865 3455666777776 4578877777777666643
No 334
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.57 E-value=0.0003 Score=73.48 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=59.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIE 132 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 132 (418)
.+.++|+|+||||||++++.+++.+....+ ...+.+-+ +.. .....+.+..+.+. .+....+....+
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~~~--~~~v~l~A-pTg---~AA~~L~e~~g~~a-------~Tih~lL~~~~~ 404 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAEELGG--LLPVGLAA-PTG---RAAKRLGEVTGLTA-------STIHRLLGYGPD 404 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC--CceEEEEe-Cch---HHHHHHHHhcCCcc-------ccHHHHhhccCC
Confidence 457899999999999999999988775431 11222211 111 11222322221110 000000000000
Q ss_pred H--HhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCC
Q 014789 133 M--LRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRL 185 (418)
Q Consensus 133 ~--l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~ 185 (418)
. ..........-+|||||+..+.. ..++.|+.... ...+++++|-.+-.
T Consensus 405 ~~~~~~~~~~~~~~llIvDEaSMvd~---~~~~~Ll~~~~-~~~rlilvGD~~QL 455 (720)
T TIGR01448 405 TFRHNHLEDPIDCDLLIVDESSMMDT---WLALSLLAALP-DHARLLLVGDTDQL 455 (720)
T ss_pred ccchhhhhccccCCEEEEeccccCCH---HHHHHHHHhCC-CCCEEEEECccccc
Confidence 0 00000112456999999998854 56677776543 34678888765543
No 335
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.56 E-value=0.0007 Score=72.23 Aligned_cols=108 Identities=18% Similarity=0.133 Sum_probs=59.2
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEM 133 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 133 (418)
..++|.|++|||||++++.+.+.+.... ..++-+. .+. ..+..|....+. ....+..+...
T Consensus 363 ~v~vv~G~AGTGKTT~l~~~~~~~e~~G---~~V~~~A---pTG------kAA~~L~e~tGi-------~a~TI~sll~~ 423 (988)
T PRK13889 363 DLGVVVGYAGTGKSAMLGVAREAWEAAG---YEVRGAA---LSG------IAAENLEGGSGI-------ASRTIASLEHG 423 (988)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEec---CcH------HHHHHHhhccCc-------chhhHHHHHhh
Confidence 3678999999999999998777665533 2333221 111 112222211110 01111122111
Q ss_pred Hhh-cCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEecc
Q 014789 134 LRE-CGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSC 183 (418)
Q Consensus 134 l~~-~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~ 183 (418)
+.. .......-||||||+-.+.. ..++.|++.......++++||=..
T Consensus 424 ~~~~~~~l~~~~vlIVDEASMv~~---~~m~~LL~~a~~~garvVLVGD~~ 471 (988)
T PRK13889 424 WGQGRDLLTSRDVLVIDEAGMVGT---RQLERVLSHAADAGAKVVLVGDPQ 471 (988)
T ss_pred hcccccccccCcEEEEECcccCCH---HHHHHHHHhhhhCCCEEEEECCHH
Confidence 111 11122456999999987754 567777776655567888888655
No 336
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.56 E-value=0.00014 Score=71.88 Aligned_cols=52 Identities=15% Similarity=0.145 Sum_probs=44.2
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCC--CceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEAC--NNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~--~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
.++|.++.+++|.++|..++.+.. ...++|.||||+|||++++.+++.+..-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 468999999999999977766543 5678899999999999999999987753
No 337
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.56 E-value=0.0027 Score=54.19 Aligned_cols=38 Identities=24% Similarity=0.193 Sum_probs=30.0
Q ss_pred eEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccC
Q 014789 55 SILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLH 95 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~ 95 (418)
.++++|+||+|||+++..++..+.... ..++.++|...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g---~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG---KKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC---CcEEEEEcCCC
Confidence 468999999999999999998887653 45666776544
No 338
>PTZ00494 tuzin-like protein; Provisional
Probab=97.55 E-value=0.0055 Score=58.67 Aligned_cols=169 Identities=14% Similarity=0.129 Sum_probs=100.8
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
..++.|+.|-..+.+.|.+. ....|+.++++|..|+||+++++.....-.. ..++++-....+ .++.+.+
T Consensus 371 ~~~V~R~~eE~~vRqvL~ql-d~aHPRIvV~TG~~GcGKSslcRsAvrkE~~------paV~VDVRg~ED---tLrsVVK 440 (664)
T PTZ00494 371 AFEVRREDEEALVRSVLTQM-APSHPRIVALAGGSGGGRCVPCRRAVRVEGV------ALVHVDVGGTED---TLRSVVR 440 (664)
T ss_pred ccccchhhHHHHHHHHHhhc-cCCCCcEEEEecCCCCCchHHHHHHHHHcCC------CeEEEEecCCcc---hHHHHHH
Confidence 46789999999888888775 5556889999999999999999988765432 234444322222 4888888
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcC----CCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEecc
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECG----LAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSC 183 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~ 183 (418)
.|+..+ ...-.+.++++.+...... ...+-+|+-|-|-..|..-..+.+.-.. +.+++-|.+--
T Consensus 441 ALgV~n------ve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~vaLac------DrRlCHvv~EV 508 (664)
T PTZ00494 441 ALGVSN------VEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVVSLVS------DCQACHIVLAV 508 (664)
T ss_pred HhCCCC------hhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHHHHHc------cchhheeeeec
Confidence 887543 1122345566665554322 1223455556676666432111111111 12333333222
Q ss_pred CCChHHHHH--HHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 184 RLDADQLLE--KRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 184 ~~~~~~~l~--~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
+ .+.|. ....-|+ ..+.+|+++..|-.++.++.+.
T Consensus 509 p---lESLT~~n~~LPRL--DFy~VPnFSr~QAf~YtqH~lD 545 (664)
T PTZ00494 509 P---MKALTPLNVSSRRL--DFYCIPPFSRRQAFAYAEHTLD 545 (664)
T ss_pred h---HhhhchhhccCccc--eeEecCCcCHHHHHHHHhcccc
Confidence 2 22221 1223355 4577899999999999999875
No 339
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.55 E-value=0.00068 Score=60.66 Aligned_cols=120 Identities=17% Similarity=0.155 Sum_probs=66.1
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhh-CCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-------hccc----cc
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLE-YPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-------QLLF----SK 119 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~-~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-------~~~~----~~ 119 (418)
.+..++|+|+||+|||+++.+++...... . -.++|+... .++..+.+. +++++... ...+ +.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~g---e~vlyvs~e--e~~~~l~~~-~~s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFG---EKVLYVSFE--EPPEELIEN-MKSFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT-----EEEEESS--S-HHHHHHH-HHTTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcC---CcEEEEEec--CCHHHHHHH-HHHcCCcHHHHhhcCCEEEEecccc
Confidence 36789999999999999999988655444 3 345666532 222333333 33333211 0100 01
Q ss_pred -----CCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----chhHHHHHHhhhccCCCcEEEEEecc
Q 014789 120 -----MASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----KQRLLYSLLDAMQSVTSQAVVIGVSC 183 (418)
Q Consensus 120 -----~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----~~~~L~~l~~~~~~~~~~~~lI~~s~ 183 (418)
..+..+....+.+.++... +.++|||-+..+... ....++.+...... ..+..+.++.
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~----~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~--~~~t~llt~~ 159 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELK----PDRVVIDSLSALLLYDDPEELRRFLRALIKFLKS--RGVTTLLTSE 159 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHT----SSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHH--TTEEEEEEEE
T ss_pred cccccccCHHHHHHHHHHHHHhcC----CCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHH--CCCEEEEEEc
Confidence 2345666677777766643 479999999988221 12355555555433 3344444443
No 340
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.55 E-value=0.00084 Score=60.50 Aligned_cols=119 Identities=17% Similarity=0.133 Sum_probs=64.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-------hcc----cc--
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-------QLL----FS-- 118 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-------~~~----~~-- 118 (418)
.+..++|+||||+|||+++..++....... -.++|+.... ++.++++. +++++... ... ++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~g---e~~lyvs~ee--~~~~i~~~-~~~~g~~~~~~~~~g~l~~~d~~~~~ 93 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMG---EPGIYVALEE--HPVQVRRN-MAQFGWDVRKYEEEGKFAIVDAFTGG 93 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC---CcEEEEEeeC--CHHHHHHH-HHHhCCCHHHHhhcCCEEEEeccccc
Confidence 367889999999999999998876543332 3456666433 33344443 22332211 000 00
Q ss_pred -------------cCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc----hhHHHHHHhhhccCCCcEEEEEe
Q 014789 119 -------------KMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK----QRLLYSLLDAMQSVTSQAVVIGV 181 (418)
Q Consensus 119 -------------~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~----~~~L~~l~~~~~~~~~~~~lI~~ 181 (418)
...+..+....+.+.+... ++-++|||-+..+.... ...++.+.++... .++.++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~----~~~~vVIDSls~l~~~~~~~~r~~l~~l~~~lk~--~~~t~llt 167 (237)
T TIGR03877 94 IGEAAEREKYVVKDPTDVRELIDVLRQAIRDI----NAKRVVIDSVTTLYITKPAMARSIVMQLKRVLSG--LGCTSIFV 167 (237)
T ss_pred cccccccccccccCcccHHHHHHHHHHHHHHh----CCCEEEEcChhHhhcCChHHHHHHHHHHHHHHHh--CCCEEEEE
Confidence 1123344455555555443 35689999988764431 1455666665443 34444444
Q ss_pred c
Q 014789 182 S 182 (418)
Q Consensus 182 s 182 (418)
+
T Consensus 168 ~ 168 (237)
T TIGR03877 168 S 168 (237)
T ss_pred E
Confidence 3
No 341
>PF13245 AAA_19: Part of AAA domain
Probab=97.55 E-value=0.00012 Score=52.91 Aligned_cols=27 Identities=30% Similarity=0.551 Sum_probs=19.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.++.++|.||||||||+++-..+..+.
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 345677799999999966665555554
No 342
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.54 E-value=0.00085 Score=57.86 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=32.9
Q ss_pred eEEEEEecchhhhhhc--chhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHH
Q 014789 142 KTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKR 194 (418)
Q Consensus 142 ~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~ 194 (418)
.|-++++||.-...+. ..++|.-+.++.. ....+|..|..+.|...+-++
T Consensus 154 ~P~vmLFDEPTSALDPElv~EVL~vm~~LA~---eGmTMivVTHEM~FAr~Vadr 205 (240)
T COG1126 154 DPKVMLFDEPTSALDPELVGEVLDVMKDLAE---EGMTMIIVTHEMGFAREVADR 205 (240)
T ss_pred CCCEEeecCCcccCCHHHHHHHHHHHHHHHH---cCCeEEEEechhHHHHHhhhe
Confidence 5889999998665543 3445544444433 568899999888776554443
No 343
>PRK04328 hypothetical protein; Provisional
Probab=97.53 E-value=0.0011 Score=60.19 Aligned_cols=40 Identities=23% Similarity=0.079 Sum_probs=28.9
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcccc
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLL 94 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~ 94 (418)
.+..++|+|+||+|||+++..++....... -..+|++...
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~g---e~~lyis~ee 61 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMG---EPGVYVALEE 61 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcC---CcEEEEEeeC
Confidence 467889999999999999999876643332 3456666433
No 344
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.53 E-value=0.00033 Score=67.29 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 37 YSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 37 ~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
.+.+.+.+...+....+.+++|.|+.|||||++++++.+.+...
T Consensus 6 Q~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~ 49 (364)
T PF05970_consen 6 QRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR 49 (364)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc
Confidence 33444444444555788999999999999999999999887653
No 345
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.53 E-value=0.0017 Score=56.03 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=18.4
Q ss_pred ceEEEECCCCCchHHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
.++++.|++|+|||+.+-..+-..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~ 48 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEA 48 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHH
Confidence 689999999999999555444433
No 346
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.51 E-value=0.0012 Score=56.63 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=34.8
Q ss_pred hhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 33 PDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
|+.|.+.+...+...-........+|.+|+|+|||.++-.++..+..
T Consensus 5 r~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 5 RPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR 51 (184)
T ss_dssp -HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc
Confidence 56666666666655433225789999999999999999988877765
No 347
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.51 E-value=0.0003 Score=61.48 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=23.5
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
+.++|+||+|+||||+++.++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~ 28 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN 28 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 468999999999999999998887644
No 348
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.0025 Score=60.78 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=24.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
+..++|.||+|+||||++..++..+...
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~ 164 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR 164 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 6788999999999999999999886544
No 349
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.50 E-value=0.00013 Score=58.19 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.6
Q ss_pred eEEEECCCCCchHHHHHHHHHHHh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.++|+|+||+||||+++.+++.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 378999999999999999999874
No 350
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=97.49 E-value=0.0056 Score=55.49 Aligned_cols=109 Identities=13% Similarity=0.080 Sum_probs=62.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIE 132 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 132 (418)
+....++|.+|.|||..++.+++..+. .+.+......+...++..++..... ....+..+....+..
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~s~p~-------~~l~~~~p~~~a~~~i~~i~~~~~~------~~~~~~~d~~~~~~~ 160 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAPSNPN-------ALLIEADPSYTALVLILIICAAAFG------ATDGTINDLTERLMI 160 (297)
T ss_pred CceEEEeccccchhHHHHHhhcccCcc-------ceeecCChhhHHHHHHHHHHHHHhc------ccchhHHHHHHHHHH
Confidence 447889999999999999998876432 2333333333333333334333321 122344444444444
Q ss_pred HHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 133 MLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 133 ~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
.+ ...+..|++||.|.|....-+.|..+.+. ..+.++.+.++
T Consensus 161 ~l-----~~~~~~iivDEA~~L~~~ale~lr~i~d~-----~Gi~~vLvG~p 202 (297)
T COG2842 161 RL-----RDTVRLIIVDEADRLPYRALEELRRIHDK-----TGIGVVLVGMP 202 (297)
T ss_pred HH-----ccCcceeeeehhhccChHHHHHHHHHHHh-----hCceEEEecCh
Confidence 44 23678999999999987544444444433 44555555544
No 351
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.48 E-value=0.0029 Score=56.48 Aligned_cols=102 Identities=12% Similarity=0.086 Sum_probs=59.1
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhC---CCCeEEEEEccccCCChHHHHHHHHHHHHHhh-----hcccccCCChH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEY---PDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-----QLLFSKMASFD 124 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~---~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~ 124 (418)
+..+.|+||||+|||+++..++....... +....++|+++.....+ ..+.+++...+... ...+....+.+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~-~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRP-ERLVQLAVRFGLDPEEVLDNIYVARPYNGE 97 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCH-HHHHHHHHHhccchhhhhccEEEEeCCCHH
Confidence 56778999999999999999887654221 11256788887554333 33445555433221 11122233444
Q ss_pred hHHHHHHHHHhhcCCCceEEEEEecchhhhhh
Q 014789 125 DNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 125 ~~~~~l~~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
+....+...... .....+.+||||-+..+..
T Consensus 98 ~~~~~l~~~~~~-~~~~~~~lvVIDsis~l~~ 128 (226)
T cd01393 98 QQLEIVEELERI-MSSGRVDLVVVDSVAALFR 128 (226)
T ss_pred HHHHHHHHHHHH-hhcCCeeEEEEcCcchhhh
Confidence 544444444331 1134678999999877643
No 352
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.00048 Score=58.82 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=52.8
Q ss_pred EEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccCc-----------eEEEecCCCHHHH
Q 014789 146 FVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSH-----------RKLLFLPPSKEDM 214 (418)
Q Consensus 146 iilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~-----------~~i~~~~~~~~e~ 214 (418)
+|||++|.+....++.|...++. ++.++.+|.+|+. +..+.|.++||+.. -.+.|.+++.+++
T Consensus 58 ~iI~~a~~l~~~A~NaLLK~LEE---Pp~~~~fiL~t~~---~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i 131 (206)
T PRK08485 58 IIVIAAPSYGIEAQNALLKILEE---PPKNICFIIVAKS---KNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDI 131 (206)
T ss_pred EEEEchHhhCHHHHHHHHHHhcC---CCCCeEEEEEeCC---hHhCchHHHhhheeccccccccccccccccCCCCHHHH
Confidence 45789999977655555555554 4577888888876 67888999999952 1367899999999
Q ss_pred HHHHHH
Q 014789 215 QRLLEH 220 (418)
Q Consensus 215 ~~il~~ 220 (418)
.+.++.
T Consensus 132 ~~~L~~ 137 (206)
T PRK08485 132 YEFLKE 137 (206)
T ss_pred HHHHHH
Confidence 999987
No 353
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.47 E-value=0.00062 Score=73.11 Aligned_cols=109 Identities=17% Similarity=0.157 Sum_probs=61.7
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIE 132 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 132 (418)
....+|.|++|||||++++.+.+.+.... ..++-+ ..+. ..+..|....++.. .+ +..+.-
T Consensus 397 ~r~~~v~G~AGTGKTt~l~~~~~~~e~~G---~~V~g~---ApTg------kAA~~L~e~~Gi~a---~T----Ias~ll 457 (1102)
T PRK13826 397 ARIAAVVGRAGAGKTTMMKAAREAWEAAG---YRVVGG---ALAG------KAAEGLEKEAGIQS---RT----LSSWEL 457 (1102)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEE---cCcH------HHHHHHHHhhCCCe---ee----HHHHHh
Confidence 56788999999999999999988776543 333322 2221 12222322221110 01 111110
Q ss_pred HHhh-cCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEecc
Q 014789 133 MLRE-CGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSC 183 (418)
Q Consensus 133 ~l~~-~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~ 183 (418)
.... ...-....||||||+-.+.. ..++.|++.......++++||-..
T Consensus 458 ~~~~~~~~l~~~~vlVIDEAsMv~~---~~m~~Ll~~~~~~garvVLVGD~~ 506 (1102)
T PRK13826 458 RWNQGRDQLDNKTVFVLDEAGMVAS---RQMALFVEAVTRAGAKLVLVGDPE 506 (1102)
T ss_pred hhccCccCCCCCcEEEEECcccCCH---HHHHHHHHHHHhcCCEEEEECCHH
Confidence 0100 01122457999999988755 566777777665567888888655
No 354
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.45 E-value=0.016 Score=56.20 Aligned_cols=309 Identities=14% Similarity=0.132 Sum_probs=158.3
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCC--------CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEAC--------NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCC 100 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~--------~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~ 100 (418)
.++|.++..+.|.-.|-.++.... .-++++.|.||+-||-+++.+.+-..+ -+|..|...+...
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapR-------gvYTTGrGSSGVG- 414 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPR-------GVYTTGRGSSGVG- 414 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcc-------cceecCCCCCccc-
Confidence 688998888877666644433222 346899999999999999988765432 2555544332210
Q ss_pred HHHHHHHH-HHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhc---------
Q 014789 101 AFKEIARQ-LCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ--------- 170 (418)
Q Consensus 101 ~~~~i~~~-l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~--------- 170 (418)
+-..+.+. +..+. ...+|.- .| ....|-+|||||++...+...+...++...
T Consensus 415 LTAAVmkDpvTgEM--~LEGGAL----------VL------AD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~ 476 (721)
T KOG0482|consen 415 LTAAVMKDPVTGEM--VLEGGAL----------VL------ADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGIN 476 (721)
T ss_pred cchhhhcCCCCCee--EeccceE----------EE------ccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccc
Confidence 00000000 00000 0000000 00 013466899999999876666766654321
Q ss_pred -cCCCcEEEEEeccCC--------ChHH--HHHHHhhcccCceEEEecCCCHHH---HHHHHHHHhc--CCCC---CCCC
Q 014789 171 -SVTSQAVVIGVSCRL--------DADQ--LLEKRVRSRFSHRKLLFLPPSKED---MQRLLEHILS--LPVD---SSLP 231 (418)
Q Consensus 171 -~~~~~~~lI~~s~~~--------~~~~--~l~~~v~sr~~~~~i~~~~~~~~e---~~~il~~~l~--~~~~---~~~~ 231 (418)
..+.+.++++++|+. ...+ .|..++.|||..--+-...++.+. +.+-+..--. -..+ ..++
T Consensus 477 TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~ 556 (721)
T KOG0482|consen 477 TTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLD 556 (721)
T ss_pred cchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCC
Confidence 123567788888863 1122 245678899963223334444332 2222222111 1111 1235
Q ss_pred hHHHHHHHHHHH--HHhCChhHHHHHHHHhc-------c-----ccCHHHHHHHHHHHhhcccc-cCCCCChhhHHHHHh
Q 014789 232 HAYAVEFNKKIK--NILADGRFKEIVNTLVN-------L-----DSTVNHLLRFLFLAVSYMDL-ESGFLSFENFKTALS 296 (418)
Q Consensus 232 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------~-----~gd~r~~~~~l~~a~~~a~~-~~~~it~~~v~~a~~ 296 (418)
+.....|-+..+ ..+-++++.+.+...+- . --.+|.++.+++.+.+.|.. -+..|..+||.+|+.
T Consensus 557 ~~~mR~yI~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALR 636 (721)
T KOG0482|consen 557 PNLMRRYISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALR 636 (721)
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 555555533322 22334444444332221 1 23789999999887766653 566799999999987
Q ss_pred ccCC--Cch---hhhhcCCChHHHHHHHHHhh-hhh-hcCCcccHHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhC
Q 014789 297 NSHR--QPK---LECIKDCSILELYILVCLKR-LEV-KEQNSYNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFEHLLQR 369 (418)
Q Consensus 297 ~~~~--~~~---~~~l~~L~~~~~~iL~a~~~-l~~-~~~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 369 (418)
-+.. ++. ...-...+... ..+++.+ +.. .++..+++..+.+. |.. +.++...+.+..+.-.++
T Consensus 637 Lme~sK~sL~~~~~~~~~~~~~~--~if~iirel~~e~g~~~v~~s~~~~r----~~~----kGfs~~ql~~~i~ey~~l 706 (721)
T KOG0482|consen 637 LMEMSKDSLYQDDGQKEDTSATD--AIFAIIRELAGEGGKRCVKLSNAEQR----CVR----KGFSEAQLKKCIDEYAEL 706 (721)
T ss_pred HHHhhhcccccccccccccchHH--HHHHHHHHHHhhcCCceeeHHHHHHH----HHH----cCCCHHHHHHHHHHHHhc
Confidence 5542 211 11222333311 2223322 222 24455677666543 332 345555555666666666
Q ss_pred Ccce
Q 014789 370 ELIC 373 (418)
Q Consensus 370 ~~i~ 373 (418)
++-.
T Consensus 707 nVw~ 710 (721)
T KOG0482|consen 707 NVWQ 710 (721)
T ss_pred CeEE
Confidence 6543
No 355
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.45 E-value=0.00025 Score=57.04 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
..++++|+|-||+||||++.++++...
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~ 32 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTG 32 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhC
Confidence 467899999999999999999986643
No 356
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.45 E-value=0.0018 Score=53.54 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=30.8
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCC
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHS 96 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~ 96 (418)
.+..+.|+||+|||||++.+.++.-..... -.++..|...+
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Lisp~~----G~l~f~Ge~vs 68 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLISPTS----GTLLFEGEDVS 68 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhccCCCC----ceEEEcCcccc
Confidence 477899999999999999999988765433 23555565544
No 357
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.44 E-value=0.00062 Score=58.57 Aligned_cols=125 Identities=21% Similarity=0.172 Sum_probs=64.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC--hHHH------HHHHHHHHHHhhhc-ccccCCC
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD--DCCA------FKEIARQLCMEHQL-LFSKMAS 122 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~--~~~~------~~~i~~~l~~~~~~-~~~~~~~ 122 (418)
++..+.|.||.|+||||+++.++..+....+ .+++++..... .... +.++++.++..... ......|
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G----~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKPSSG----EILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc----EEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 5678889999999999999998876543322 25566644321 1111 11123333222100 0111123
Q ss_pred hHhHHHHH-HHHHhhcCCCceEEEEEecchhhhh-hcchhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 123 FDDNSQFM-IEMLRECGLAHKTIIFVLDEFDLFA-QGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 123 ~~~~~~~l-~~~l~~~~~~~~~~viilDEid~l~-~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
..+..... ...+- ..|-++++||--.-. ......++.++...... ....+|.+|...+
T Consensus 100 ~G~~qrl~laral~-----~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~-~~~tiii~sh~~~ 159 (180)
T cd03214 100 GGERQRVLLARALA-----QEPPILLLDEPTSHLDIAHQIELLELLRRLARE-RGKTVVMVLHDLN 159 (180)
T ss_pred HHHHHHHHHHHHHh-----cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHH
Confidence 33322221 12222 257899999965333 33556666666543321 1346777887644
No 358
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=97.44 E-value=0.041 Score=52.42 Aligned_cols=141 Identities=12% Similarity=0.177 Sum_probs=83.0
Q ss_pred ceEEEEEecchhhhhhc-chhHHHHHHhhhccC-CCcEEEEEeccCCChHHHH---HHHhhcccCceEEEecCCCHHHHH
Q 014789 141 HKTIIFVLDEFDLFAQG-KQRLLYSLLDAMQSV-TSQAVVIGVSCRLDADQLL---EKRVRSRFSHRKLLFLPPSKEDMQ 215 (418)
Q Consensus 141 ~~~~viilDEid~l~~~-~~~~L~~l~~~~~~~-~~~~~lI~~s~~~~~~~~l---~~~v~sr~~~~~i~~~~~~~~e~~ 215 (418)
+..-+++|++++.+... ....+..+.+..... ...++++..++..+-...+ -+.+.++. ..+.+.+++..++.
T Consensus 75 ~~~klvii~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~--~~~~~~~~~~~~~~ 152 (340)
T PRK05574 75 SDRKLVELRLPEFLTGAKGEKALKRLEAYLNPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKA--VVVEAQPPKEAELP 152 (340)
T ss_pred ccCeEEEEECCCCCCchhHHHHHHHHHHhccCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCc--eEEEcCCCCHHHHH
Confidence 35678899999887654 234455555543111 2245666666655533333 34444444 56789999999999
Q ss_pred HHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHH
Q 014789 216 RLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTAL 295 (418)
Q Consensus 216 ~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~ 295 (418)
..+...+.- .++ -++++++..++..+ .+|...+.+-+..-...+. +.. ||.++|.+.+
T Consensus 153 ~~i~~~~~~---~g~--------------~i~~~a~~~L~~~~---~~d~~~l~~El~KL~l~~~-~~~-It~~~I~~~i 210 (340)
T PRK05574 153 QWIQQRLKQ---QGL--------------QIDAAALQLLAERV---EGNLLALAQELEKLALLYP-DGK-ITLEDVEEAV 210 (340)
T ss_pred HHHHHHHHH---cCC--------------CCCHHHHHHHHHHh---CchHHHHHHHHHHHHhhcC-CCC-CCHHHHHHHH
Confidence 999988751 111 13444444444432 4788887777766443332 223 9999998876
Q ss_pred hccCCCchhh
Q 014789 296 SNSHRQPKLE 305 (418)
Q Consensus 296 ~~~~~~~~~~ 305 (418)
.........+
T Consensus 211 ~~~~~~~~f~ 220 (340)
T PRK05574 211 PDSARFDVFD 220 (340)
T ss_pred hhhhcCCHHH
Confidence 6554444333
No 359
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.44 E-value=0.00088 Score=55.78 Aligned_cols=125 Identities=12% Similarity=0.043 Sum_probs=65.2
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEE-EccccCCChHHHHHHHHHHHHHhhhcccccC-----CChHh--
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIK-LNGLLHSDDCCAFKEIARQLCMEHQLLFSKM-----ASFDD-- 125 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~-in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~~-- 125 (418)
+-+.||+++|.|||+++-..+-...... .++.++. +-+.....+..++..+ ..-.-..+..+ ....+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g-~~v~~vQFlKg~~~~gE~~~l~~l----~~v~~~~~g~~~~~~~~~~~~~~ 77 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG-YRVGVVQFLKGGWKYGELKALERL----PNIEIHRMGRGFFWTTENDEEDI 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEEEeCCCCccCHHHHHHhC----CCcEEEECCCCCccCCCChHHHH
Confidence 3577899999999999988776655443 2243432 4443334444444333 10000000110 11111
Q ss_pred -HHHHHHHHHhhcCCCceEEEEEecchhhhhhc---chhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 126 -NSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG---KQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 126 -~~~~l~~~l~~~~~~~~~~viilDEid~l~~~---~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
..+..++..++.-..+.+-++||||+-..... ..+.+..+++ ..+..+-+|.|+...+
T Consensus 78 ~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~---~rp~~~evIlTGr~~p 139 (159)
T cd00561 78 AAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLK---AKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHH---cCCCCCEEEEECCCCC
Confidence 11112222222222346789999999888665 3344545544 3345678888887754
No 360
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.43 E-value=0.0019 Score=61.84 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=32.4
Q ss_pred CCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHH
Q 014789 23 NFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 23 ~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.+-| +.+ .....+..|.+.+. .+. ...|+++.||+|||||+++..+...
T Consensus 184 G~~P-~~~-~~r~k~~~L~rl~~-fve--~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 184 GYEP-EGF-EARQKLLLLARLLP-LVE--PNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred CCCc-ccC-ChHHHHHHHHhhHH-HHh--cCCcEEEECCCCCCHHHHHHHHhHH
Confidence 3444 344 34445555555432 233 4678999999999999999987765
No 361
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=97.42 E-value=0.021 Score=53.36 Aligned_cols=142 Identities=13% Similarity=0.175 Sum_probs=86.0
Q ss_pred ceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHH
Q 014789 141 HKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLL 218 (418)
Q Consensus 141 ~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il 218 (418)
+..-+++|++++.+... .....|.++....+....+|..++..+....+.+.+.. +. ..+.|.+++..++..++
T Consensus 45 ~~~kliii~~~~~~~~~--~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~--~~i~~~~~~~~~~~~~i 120 (302)
T TIGR01128 45 SERRLVELRNPEGKPGA--KGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNA--QIVECKTPKEQELPRWI 120 (302)
T ss_pred cCCeEEEEECCCCCCCH--HHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCe--eEEEecCCCHHHHHHHH
Confidence 35678999999987543 12333444444444556666666655543443333333 44 56889999999999999
Q ss_pred HHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhcc
Q 014789 219 EHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNS 298 (418)
Q Consensus 219 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~ 298 (418)
...+.- .++ -++++++..++..+ .||.+.+.+-+.+-...+. ...||.++|.......
T Consensus 121 ~~~~~~---~g~--------------~i~~~a~~~l~~~~---~~d~~~l~~el~KL~~~~~--~~~It~e~I~~~~~~~ 178 (302)
T TIGR01128 121 QARLKK---LGL--------------RIDPDAVQLLAELV---EGNLLAIAQELEKLALYAP--DGKITLEDVEEAVSDS 178 (302)
T ss_pred HHHHHH---cCC--------------CCCHHHHHHHHHHh---CcHHHHHHHHHHHHHhhCC--CCCCCHHHHHHHHhhh
Confidence 987651 111 13455555555433 5789988888877544432 2369999998877654
Q ss_pred CCCchhhhhc
Q 014789 299 HRQPKLECIK 308 (418)
Q Consensus 299 ~~~~~~~~l~ 308 (418)
......+.+.
T Consensus 179 ~~~~if~l~d 188 (302)
T TIGR01128 179 ARFNVFDLTD 188 (302)
T ss_pred hcCCHHHHHH
Confidence 4443333333
No 362
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.42 E-value=0.0022 Score=57.46 Aligned_cols=122 Identities=18% Similarity=0.152 Sum_probs=65.4
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-------hcccc------
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-------QLLFS------ 118 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-------~~~~~------ 118 (418)
.+..++|.|+||+|||+++..++....... -.+++++.... ...+... +++++... ...+-
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g---~~~~~is~e~~--~~~i~~~-~~~~g~~~~~~~~~~~l~i~d~~~~~ 92 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDG---DPVIYVTTEES--RESIIRQ-AAQFGMDFEKAIEEGKLVIIDALMKE 92 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcC---CeEEEEEccCC--HHHHHHH-HHHhCCCHHHHhhcCCEEEEEccccc
Confidence 367889999999999999998876543332 34566765322 2223222 33332111 00000
Q ss_pred -------cCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc----hhHHHHHHhhhccCCCcEEEEEecc
Q 014789 119 -------KMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK----QRLLYSLLDAMQSVTSQAVVIGVSC 183 (418)
Q Consensus 119 -------~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~----~~~L~~l~~~~~~~~~~~~lI~~s~ 183 (418)
...+.++....+.+..+... ..+.+++||.+..+.... ...++.+.+.... .++.+|.++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~--~~~tvil~~~ 164 (229)
T TIGR03881 93 KEDEWSLRELSIEELLNKVIEAKKYLG--YGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNR--WNFTILLTSQ 164 (229)
T ss_pred cccccccccCCHHHHHHHHHHHHHhhc--cCceEEEecCchhhhccChHHHHHHHHHHHHHHHh--CCCEEEEEec
Confidence 11234455555555554421 135788999998885431 2334445444332 3556666654
No 363
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=97.41 E-value=0.0056 Score=53.80 Aligned_cols=41 Identities=34% Similarity=0.622 Sum_probs=28.3
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhC-CCCeEEEEEccc
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEY-PDTISVIKLNGL 93 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~-~~~~~~v~in~~ 93 (418)
.++++|.|.+|+|||++++.++..+...+ +..+.++-+++.
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 45899999999999999999998887642 344666666654
No 364
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.40 E-value=0.0014 Score=59.82 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=27.3
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcc
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNG 92 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~ 92 (418)
+..++|+|+||+|||+++.+++....... -.++|+..
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~G---e~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRG---NPVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCC---CcEEEEEe
Confidence 66788999999999999999877654332 23455554
No 365
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.39 E-value=0.0029 Score=58.52 Aligned_cols=46 Identities=24% Similarity=0.386 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHhcC--------CCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 35 SNYSKLKFLVSSSVTEA--------CNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 35 ~e~~~l~~~l~~~~~~~--------~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
...+.+.+.|...+... .+..++|.||+|+||||++..++..+...
T Consensus 168 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 168 DAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred HHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 34555666666655311 24578899999999999999999888654
No 366
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.39 E-value=0.00098 Score=66.68 Aligned_cols=130 Identities=18% Similarity=0.189 Sum_probs=68.6
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhhhC-----CCCeEEEEEccccCC---C--------------hHHHHHHHHHH
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLLEY-----PDTISVIKLNGLLHS---D--------------DCCAFKEIARQ 108 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~-----~~~~~~v~in~~~~~---~--------------~~~~~~~i~~~ 108 (418)
+++..++|.|++|||||++.++++.--+-.. |..-...++.-.+.- + ...-+.+++.+
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~ 496 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHK 496 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHH
Confidence 3588999999999999999999886544211 111112222211110 0 11223333333
Q ss_pred HHHhhh-------cccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-chhHHHHHHhhhccCCCcEEEEE
Q 014789 109 LCMEHQ-------LLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-KQRLLYSLLDAMQSVTSQAVVIG 180 (418)
Q Consensus 109 l~~~~~-------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-~~~~L~~l~~~~~~~~~~~~lI~ 180 (418)
.+...- .+=....|..|....-+..+-- .+|.++||||+=.-.+. .+..+|++++..- ..+.+|-
T Consensus 497 vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL----~kP~~v~LDEATsALDe~~e~~l~q~l~~~l---p~~tvIS 569 (604)
T COG4178 497 VGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLL----HKPKWVFLDEATSALDEETEDRLYQLLKEEL---PDATVIS 569 (604)
T ss_pred cCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHH----cCCCEEEEecchhccChHHHHHHHHHHHhhC---CCCEEEE
Confidence 322110 0000112233333322222221 36899999998655444 7788888876411 4568888
Q ss_pred eccCCCh
Q 014789 181 VSCRLDA 187 (418)
Q Consensus 181 ~s~~~~~ 187 (418)
++.+..+
T Consensus 570 V~Hr~tl 576 (604)
T COG4178 570 VGHRPTL 576 (604)
T ss_pred eccchhh
Confidence 8877553
No 367
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.38 E-value=0.00066 Score=68.95 Aligned_cols=28 Identities=29% Similarity=0.451 Sum_probs=24.3
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
.+..+|+|+||||||+++..++..+...
T Consensus 160 ~~~~vitGgpGTGKTt~v~~ll~~l~~~ 187 (586)
T TIGR01447 160 SNFSLITGGPGTGKTTTVARLLLALVKQ 187 (586)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999887654
No 368
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.37 E-value=0.0048 Score=56.79 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=30.4
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcccc
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLL 94 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~ 94 (418)
.+..++|.|+||+|||+++..++..+....+ ..+++++...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g--~~vl~iS~E~ 69 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHG--VRVGTISLEE 69 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcC--ceEEEEEccc
Confidence 3567889999999999999999887754422 4566666533
No 369
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.37 E-value=0.00085 Score=58.32 Aligned_cols=100 Identities=20% Similarity=0.240 Sum_probs=50.4
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhC-------CCCeEEEEEccccCCChHHHHHHHHHHHHH---hhhccc-----
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEY-------PDTISVIKLNGLLHSDDCCAFKEIARQLCM---EHQLLF----- 117 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~-------~~~~~~v~in~~~~~~~~~~~~~i~~~l~~---~~~~~~----- 117 (418)
+...+|+||+|+|||+++..++..+.... .....++++++.... ..+.+.+...... .....+
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~--~~~~~rl~~~~~~~~~~~~~~~~~~~~ 109 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE--SQIARRLRALLQDYDDDANLFFVDLSN 109 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H--HHHHHHHHHHHTTS-HHHHHHHHHH--
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH--HHHHHHHHHHhcccCCccceEEeeccc
Confidence 56789999999999999999998776421 134678888865542 2222222221110 000000
Q ss_pred ----------ccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc
Q 014789 118 ----------SKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG 157 (418)
Q Consensus 118 ----------~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~ 157 (418)
..........+.+.+.+.+. ..+-+||||-+..+...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 110 WGCIRLFEPDSGGPLLDEDLEELEAALKEL---YGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp E-EE---TTS---TTSHHHHHHHHHHHTT-------SEEEEE-GGGG--S
T ss_pred cccceeeecccccccchHHHHHHHHHHhhc---CCCcEEEEcCHHHHhcC
Confidence 00111233445556655542 25889999999888874
No 370
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.35 E-value=0.0017 Score=59.44 Aligned_cols=107 Identities=17% Similarity=0.173 Sum_probs=49.5
Q ss_pred eEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEML 134 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 134 (418)
-++|+|.||+|||++++.+.+.+.... ..++.++-.... .... .+............+...+
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~---~~v~~i~~~~~~--------------~~~~-~y~~~~~Ek~~R~~l~s~v 64 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKG---KEVVIISDDSLG--------------IDRN-DYADSKKEKEARGSLKSAV 64 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT-----EEEE-THHHH---------------TTS-SS--GGGHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcC---CEEEEEcccccc--------------cchh-hhhchhhhHHHHHHHHHHH
Confidence 578999999999999999999888743 444444411100 0000 0000011111112222222
Q ss_pred hhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCC
Q 014789 135 RECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRL 185 (418)
Q Consensus 135 ~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~ 185 (418)
.+.- +...|||+|+.-++- ..=|.|+.+........++|.+.++.
T Consensus 65 ~r~l--s~~~iVI~Dd~nYiK----g~RYelyclAr~~~~~~c~i~~~~~~ 109 (270)
T PF08433_consen 65 ERAL--SKDTIVILDDNNYIK----GMRYELYCLARAYGTTFCVIYCDCPL 109 (270)
T ss_dssp HHHH--TT-SEEEE-S---SH----HHHHHHHHHHHHTT-EEEEEEEE--H
T ss_pred HHhh--ccCeEEEEeCCchHH----HHHHHHHHHHHHcCCCEEEEEECCCH
Confidence 2111 123688999988773 45556655555555777888777663
No 371
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.35 E-value=0.0016 Score=57.79 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=51.5
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHh--hhcccccCCChHhHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCME--HQLLFSKMASFDDNSQFM 130 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~~~~~l 130 (418)
+..+.|+|+||+|||+++..++....... ..+++++...... .-++++....... ....+....+..+....+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g---~~v~yi~~e~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQG---KKVAYIDTEGLSS--ERFRQIAGDRPERAASSIIVFEPMDFNEQGRAI 93 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEECCCCCH--HHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHH
Confidence 55678999999999999999998876443 4567776543322 2334443321110 011111222333332222
Q ss_pred HHHHhhcCCCceEEEEEecchhhhh
Q 014789 131 IEMLRECGLAHKTIIFVLDEFDLFA 155 (418)
Q Consensus 131 ~~~l~~~~~~~~~~viilDEid~l~ 155 (418)
........ ..+.+||||-+..+.
T Consensus 94 ~~~~~~~~--~~~~lvvIDsi~~l~ 116 (218)
T cd01394 94 QETETFAD--EKVDLVVVDSATALY 116 (218)
T ss_pred HHHHHHHh--cCCcEEEEechHHhh
Confidence 22211111 136789999988774
No 372
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.35 E-value=0.0016 Score=65.04 Aligned_cols=95 Identities=17% Similarity=0.246 Sum_probs=60.1
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh-------cc----cccC
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-------LL----FSKM 120 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-------~~----~~~~ 120 (418)
++..++|.||||+|||+++.+++....... -.++|+..... +.++... ++.++.... .. .+..
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~g---e~~~y~s~eEs--~~~i~~~-~~~lg~~~~~~~~~g~l~~~~~~p~~ 335 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANK---ERAILFAYEES--RAQLLRN-AYSWGIDFEEMEQQGLLKIICAYPES 335 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEEeeCC--HHHHHHH-HHHcCCChHHHhhCCcEEEEEccccc
Confidence 367889999999999999999998876543 34577764433 2334433 344442210 10 1122
Q ss_pred CChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhh
Q 014789 121 ASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 121 ~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
.+.++....+.+.+.+. ++-++|||-+..+..
T Consensus 336 ~~~~~~~~~i~~~i~~~----~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 336 AGLEDHLQIIKSEIADF----KPARIAIDSLSALAR 367 (484)
T ss_pred CChHHHHHHHHHHHHHc----CCCEEEEcCHHHHHH
Confidence 34466677777777654 467999999987743
No 373
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.34 E-value=0.0012 Score=56.41 Aligned_cols=130 Identities=10% Similarity=0.013 Sum_probs=67.4
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEE-EEccccCCChHHHHHHHHHHHHHh-hhcccc-cCCChHh---
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVI-KLNGLLHSDDCCAFKEIARQLCME-HQLLFS-KMASFDD--- 125 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v-~in~~~~~~~~~~~~~i~~~l~~~-~~~~~~-~~~~~~~--- 125 (418)
..+.+.+||++|.|||+++-.++-...... .++.++ ++-+...+.+..++..+- .+... .+..+. ......+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G-~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHG-KKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCC-CeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCcccCCCcHHHHH
Confidence 457899999999999999988776655543 224444 333433344444443311 01000 000000 0011111
Q ss_pred HHHHHHHHHhhcCCCceEEEEEecchhhhhhc---chhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 126 NSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG---KQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 126 ~~~~l~~~l~~~~~~~~~~viilDEid~l~~~---~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
..+..++..++.-..+.+-+|||||+-..... ..+.+..+++ ..+..+-||.|....+
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~---~rp~~~evVlTGR~~p 159 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALN---ARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHH---cCCCCCEEEEECCCCC
Confidence 11222222222212356889999999877765 2333444433 3446678888887654
No 374
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.34 E-value=0.00098 Score=65.73 Aligned_cols=90 Identities=20% Similarity=0.178 Sum_probs=52.5
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-hcccccCCChHhHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-QLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~l~ 131 (418)
+..++|+|+||+|||+++..++..+.... -.++|+.+... ..+ +..-+..++... ....... ...+.+.
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g---~kvlYvs~EEs--~~q-i~~ra~rlg~~~~~l~~~~e----~~~~~I~ 163 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQ---MKVLYVSGEES--LQQ-IKMRAIRLGLPEPNLYVLSE----TNWEQIC 163 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcC---CcEEEEECcCC--HHH-HHHHHHHcCCChHHeEEcCC----CCHHHHH
Confidence 56788999999999999999988776543 34677776432 222 211222332111 0101111 1234444
Q ss_pred HHHhhcCCCceEEEEEecchhhhhh
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
+.+.+. ++-++|||.+..+..
T Consensus 164 ~~i~~~----~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 164 ANIEEE----NPQACVIDSIQTLYS 184 (454)
T ss_pred HHHHhc----CCcEEEEecchhhcc
Confidence 445442 577999999988753
No 375
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.015 Score=55.51 Aligned_cols=58 Identities=17% Similarity=0.100 Sum_probs=37.8
Q ss_pred hhhHHHHHHHHHHHHhc-----CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcccc
Q 014789 34 DSNYSKLKFLVSSSVTE-----ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLL 94 (418)
Q Consensus 34 ~~e~~~l~~~l~~~~~~-----~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~ 94 (418)
+..++.+.+.+...+.. ..+..+.|.||+|+||||++..++..+.... ..+..+++..
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~G---kkVglI~aDt 279 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFHGKK---KTVGFITTDH 279 (436)
T ss_pred HHHHHHHHHHHHHHhccccccccCCcEEEEECCCCCcHHHHHHHHHHHHHHcC---CcEEEEecCC
Confidence 34455555555444332 2246889999999999999999998886543 3344455433
No 376
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.34 E-value=0.0028 Score=59.65 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=26.0
Q ss_pred EEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEE
Q 014789 56 ILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKL 90 (418)
Q Consensus 56 ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~i 90 (418)
++|+|++|+||||+++.+.+.+....+..+.++.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~ 36 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITY 36 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcc
Confidence 57999999999999999999887443323444433
No 377
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.34 E-value=0.0016 Score=58.78 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=30.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcccc
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLL 94 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~ 94 (418)
++..++|.|+||+|||+++..++.......+ ..++++++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g--~~vly~s~E~ 52 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQG--KPVLFFSLEM 52 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CceEEEeCCC
Confidence 3567889999999999999998887766532 4456666543
No 378
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0025 Score=53.77 Aligned_cols=42 Identities=19% Similarity=0.374 Sum_probs=31.9
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD 97 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~ 97 (418)
.+..++|.||.|+||||++|.++--+....+. |++++.....
T Consensus 27 ~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~----v~~~~~~i~~ 68 (209)
T COG4133 27 AGEALQITGPNGAGKTTLLRILAGLLRPDAGE----VYWQGEPIQN 68 (209)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcccCCCCCe----EEecCCCCcc
Confidence 46789999999999999999998877765543 6666444433
No 379
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.33 E-value=0.00096 Score=58.02 Aligned_cols=45 Identities=27% Similarity=0.293 Sum_probs=32.0
Q ss_pred EEEEEecchhhhhhcchhHHHHHHhhhc------------cCCCcEEEEEeccCCCh
Q 014789 143 TIIFVLDEFDLFAQGKQRLLYSLLDAMQ------------SVTSQAVVIGVSCRLDA 187 (418)
Q Consensus 143 ~~viilDEid~l~~~~~~~L~~l~~~~~------------~~~~~~~lI~~s~~~~~ 187 (418)
..++.+||++.+.....+.|-.++.... ..+...++||+||..++
T Consensus 96 ~~iveldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~ 152 (198)
T PF05272_consen 96 KWIVELDELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDF 152 (198)
T ss_pred hHheeHHHHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcce
Confidence 3688999999998667777777763321 12346788999998654
No 380
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.33 E-value=0.0026 Score=60.11 Aligned_cols=98 Identities=11% Similarity=0.124 Sum_probs=57.1
Q ss_pred CceEEEECCCCCchHHHHHHHHHHH--hhh-CCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-----hcccccCCChH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDL--LLE-YPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-----QLLFSKMASFD 124 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l--~~~-~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~ 124 (418)
+....|+|+||||||.++..++-.. ... .+..-.++|++....-.+.+ +.++++.++... .+.+.+..+.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peR-l~~ia~~~g~d~~~~l~~I~~~~~~~~e 204 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDR-IVPIAERFGMDADAVLDNIIYARAYTYE 204 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHH-HHHHHHHcCCChhhhcCeEEEecCCCHH
Confidence 4556699999999999999886433 221 22235678888755434433 555666664332 12223334444
Q ss_pred hHHHHHHH---HHhhcCCCceEEEEEecchhhhh
Q 014789 125 DNSQFMIE---MLRECGLAHKTIIFVLDEFDLFA 155 (418)
Q Consensus 125 ~~~~~l~~---~l~~~~~~~~~~viilDEid~l~ 155 (418)
+....+.. .+.+ .++.+||||-+-.+.
T Consensus 205 ~~~~~l~~l~~~i~~----~~~~LvVIDSital~ 234 (344)
T PLN03187 205 HQYNLLLGLAAKMAE----EPFRLLIVDSVIALF 234 (344)
T ss_pred HHHHHHHHHHHHHHh----cCCCEEEEeCcHHhh
Confidence 44333332 2322 357789999987654
No 381
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.32 E-value=0.00068 Score=59.23 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=21.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
+..+.|+||.|+||||+++.++...
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 4678899999999999999987544
No 382
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.32 E-value=0.00077 Score=62.86 Aligned_cols=67 Identities=21% Similarity=0.187 Sum_probs=52.5
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCC--CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEAC--NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~--~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.+.|-++.++++.++++.+..+.. ...++|.||+|+|||++++.+.+.+..- ..+....|-.+..|
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y----~~Y~l~~~Pm~e~P 129 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY----PIYTLKGCPMHEEP 129 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE----EEEEecCCccccCh
Confidence 4689999999999999999987655 5678899999999999999988887753 22233445555555
No 383
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.32 E-value=0.0025 Score=57.31 Aligned_cols=99 Identities=12% Similarity=0.150 Sum_probs=54.9
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhC---CCCeEEEEEccccCCChHHHHHHHHHHHHHhhh-----cccccCCChH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEY---PDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-----LLFSKMASFD 124 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~---~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~ 124 (418)
+..+.|+||||+|||+++..++....... +....++|+++...... .-+.+++++.+.... +.+....+..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~-~rl~~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRP-ERLVQIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCH-HHHHHHHHHhccChHhHhcCEEEEecCCHH
Confidence 56678999999999999999985532211 11246778887654333 334455554432210 1111222333
Q ss_pred hHH---HHHHHHHhhcCCCceEEEEEecchhhhh
Q 014789 125 DNS---QFMIEMLRECGLAHKTIIFVLDEFDLFA 155 (418)
Q Consensus 125 ~~~---~~l~~~l~~~~~~~~~~viilDEid~l~ 155 (418)
+.. ..+.+.+.+. .++.+||||-+..+.
T Consensus 98 ~l~~~l~~l~~~l~~~---~~~~liVIDSis~~~ 128 (235)
T cd01123 98 HQLQLLEELEAILIES---SRIKLVIVDSVTALF 128 (235)
T ss_pred HHHHHHHHHHHHHhhc---CCeeEEEEeCcHHHH
Confidence 322 2333333332 268899999988763
No 384
>PRK05973 replicative DNA helicase; Provisional
Probab=97.32 E-value=0.0018 Score=57.83 Aligned_cols=39 Identities=13% Similarity=0.028 Sum_probs=29.3
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcccc
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLL 94 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~ 94 (418)
+..++|.|+||+|||+++..++....... ..++|+....
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~G---e~vlyfSlEe 102 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSG---RTGVFFTLEY 102 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcC---CeEEEEEEeC
Confidence 56788999999999999999887765443 4456665433
No 385
>PF13479 AAA_24: AAA domain
Probab=97.31 E-value=0.00069 Score=59.96 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=18.8
Q ss_pred CceEEEECCCCCchHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELI 73 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~ 73 (418)
+-.++|||+||+|||+++..+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 557999999999999999876
No 386
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.31 E-value=0.00048 Score=55.48 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=35.4
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 34 DSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 34 ~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
+++..++...|...+. .+..++|.|+.|+|||++++.+++.+..
T Consensus 5 ~~~t~~l~~~l~~~l~--~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 5 EKAMDKFGKAFAKPLD--FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHHHhCC--CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4667777777766653 4568899999999999999999998763
No 387
>PTZ00035 Rad51 protein; Provisional
Probab=97.31 E-value=0.0038 Score=59.09 Aligned_cols=102 Identities=10% Similarity=0.141 Sum_probs=57.2
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhh---hCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-----hcccccCCChH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLL---EYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-----QLLFSKMASFD 124 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~---~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~ 124 (418)
+..+.|+|++|+|||+++..++-...- ..+..-.++|++....-.+.. +.++++.++... .+.+.+..+.+
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~~~~~l~nI~~~~~~~~e 196 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLDPEDVLDNIAYARAYNHE 196 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCChHhHhhceEEEccCCHH
Confidence 556779999999999999988754431 111234667888755433332 555666554321 11122233444
Q ss_pred hHHHHHHHHHhhcCCCceEEEEEecchhhhhh
Q 014789 125 DNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 125 ~~~~~l~~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
+..+.+........ ..++.+||||-+-.+..
T Consensus 197 ~~~~~l~~~~~~l~-~~~~~lvVIDSital~r 227 (337)
T PTZ00035 197 HQMQLLSQAAAKMA-EERFALLIVDSATALFR 227 (337)
T ss_pred HHHHHHHHHHHHhh-ccCccEEEEECcHHhhh
Confidence 44444333222111 24678999999887543
No 388
>PRK06696 uridine kinase; Validated
Probab=97.30 E-value=0.0008 Score=60.04 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=37.2
Q ss_pred ChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 32 SPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 32 gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
.|.+.+++|.+.+... ..+.+..|.|.|++|+||||+++.+++.+...
T Consensus 2 ~~~~~~~~la~~~~~~-~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 2 SRKQLIKELAEHILTL-NLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred cHHHHHHHHHHHHHHh-CCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3667777777776553 33456677899999999999999999999754
No 389
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.29 E-value=0.0098 Score=58.19 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcC------CCceEEEECCCCCchHHHHHHHHHHHh-hhCCCCeEEEEEcccc
Q 014789 37 YSKLKFLVSSSVTEA------CNNSILLLGPRGSGKIAVLELILTDLL-LEYPDTISVIKLNGLL 94 (418)
Q Consensus 37 ~~~l~~~l~~~~~~~------~~~~ill~G~~GtGKT~l~~~~~~~l~-~~~~~~~~~v~in~~~ 94 (418)
...+.+.|...+... .+..++|.||+|+||||++..++..+. ...+ ..+..+++..
T Consensus 199 ~~~~~~~L~~~l~~~~~~~~~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g--~~V~li~~D~ 261 (424)
T PRK05703 199 WRYLLELLANMIPVRVEDILKQGGVVALVGPTGVGKTTTLAKLAARYALLYGK--KKVALITLDT 261 (424)
T ss_pred HHHHHHHHHHHhCccccccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--CeEEEEECCc
Confidence 445555555544332 245788999999999999999988776 3322 3445555433
No 390
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.28 E-value=0.00057 Score=60.63 Aligned_cols=127 Identities=13% Similarity=0.188 Sum_probs=62.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHH-HHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILT-DLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFM 130 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~-~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 130 (418)
.+..++|+||.|+|||++.+.++. .+....+. ++.|....- ..+.+|...++.... ......++..-+..+
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~-----~v~a~~~~~--~~~~~i~~~~~~~d~-~~~~~StF~~e~~~~ 101 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGS-----FVPASSATL--SIFDSVLTRMGASDS-IQHGMSTFMVELSET 101 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCC-----EEEcCceEE--eccceEEEEecCccc-cccccchHHHHHHHH
Confidence 356789999999999999999886 44333221 111111000 011111111111000 011122344445555
Q ss_pred HHHHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhhccCCCcEEEEEeccCCChHHH
Q 014789 131 IEMLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQL 190 (418)
Q Consensus 131 ~~~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~ 190 (418)
...++... .+.+++|||+..=... .......+++..... .+..+|.+|...++.+.
T Consensus 102 ~~il~~~~---~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 102 SHILSNCT---SRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHhCC---CCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHHHHHH
Confidence 66665543 5889999997432221 223333344332222 24567778877665443
No 391
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=97.28 E-value=0.043 Score=52.39 Aligned_cols=205 Identities=13% Similarity=0.127 Sum_probs=108.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 131 (418)
..+..+|||+-.-.....++.+.+.+.......+.++.+++...... +.+++..+
T Consensus 19 ~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e~~~~---~~~~~~~~---------------------- 73 (343)
T PRK06585 19 KIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDDLDAD---PARLEDEA---------------------- 73 (343)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHHhhcC---HHHHHHHH----------------------
Confidence 46778899998866665566555554332222355555554332210 22333332
Q ss_pred HHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCH
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSK 211 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~ 211 (418)
...+-.+...+|++.+.+.- ....|..++..+ ....++|......+-...+.+.+...-....+.+.+++.
T Consensus 74 ---~t~slF~~~rlViv~~~~~~---~~~~L~~~l~~~---~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~ 144 (343)
T PRK06585 74 ---NAISLFGGRRLIWVRAGSKN---LAAALKALLESP---PGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDE 144 (343)
T ss_pred ---hCCCCCCCceEEEEECCchh---HHHHHHHHHcCC---CCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCH
Confidence 22222334567787754321 223455555443 223344444444433333333222111123577888899
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhH
Q 014789 212 EDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENF 291 (418)
Q Consensus 212 ~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v 291 (418)
.++..++..++. ..++ .++++++..++..+ .||.+.+.+-+.+-...+. +...||.++|
T Consensus 145 ~~l~~~i~~~~~---~~g~--------------~i~~~a~~~L~~~~---g~dl~~l~~EleKL~ly~~-~~~~It~edV 203 (343)
T PRK06585 145 RDLARLIDDELA---EAGL--------------RITPDARALLVALL---GGDRLASRNEIEKLALYAH-GKGEITLDDV 203 (343)
T ss_pred HHHHHHHHHHHH---HCCC--------------CCCHHHHHHHHHHh---CCCHHHHHHHHHHHHHhcC-CCCCCCHHHH
Confidence 999999999875 1111 23455555555543 5788887777766444422 3457999999
Q ss_pred HHHHhccCCCchhhhhcCCC
Q 014789 292 KTALSNSHRQPKLECIKDCS 311 (418)
Q Consensus 292 ~~a~~~~~~~~~~~~l~~L~ 311 (418)
.+.+.........+.+..+.
T Consensus 204 ~~lv~~~~e~~if~l~dai~ 223 (343)
T PRK06585 204 RAVVGDASALSLDDAADAAL 223 (343)
T ss_pred HHHhCCcccccHHHHHHHHH
Confidence 98877665555544444433
No 392
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=97.28 E-value=0.023 Score=53.81 Aligned_cols=146 Identities=16% Similarity=0.125 Sum_probs=78.6
Q ss_pred eEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEe-ccCCChHHHHHHHhhcccCceEEEec---CCCHHHHHHH
Q 014789 142 KTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGV-SCRLDADQLLEKRVRSRFSHRKLLFL---PPSKEDMQRL 217 (418)
Q Consensus 142 ~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~-s~~~~~~~~l~~~v~sr~~~~~i~~~---~~~~~e~~~i 217 (418)
...+|+|++++.+..........|.+.....+...++|.+ +...+-...+.+.++... ....|. +++.+++..+
T Consensus 61 ~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~--~~~~~~~~~~~~~~~l~~~ 138 (326)
T PRK07452 61 GGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLA--EEKEFSLIPPWDTEGLKQL 138 (326)
T ss_pred CceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHce--eEEEecCCCcccHHHHHHH
Confidence 5667888887765432233333444444443334444443 444443233334444333 344554 3456778888
Q ss_pred HHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhc
Q 014789 218 LEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSN 297 (418)
Q Consensus 218 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~ 297 (418)
+..++.- .++ -++++++..++..+ .+|.+.+.+-+.+-..++..+...||.++|.+.+..
T Consensus 139 i~~~~~~---~g~--------------~i~~~a~~~L~~~~---g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~ 198 (326)
T PRK07452 139 VERTAQE---LGV--------------KLTPEAAELLAEAV---GNDSRRLYNELEKLALYAENSTKPISAEEVKALVSN 198 (326)
T ss_pred HHHHHHH---cCC--------------CCCHHHHHHHHHHh---CccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhcc
Confidence 8888751 111 23444444444433 478888877777654443234567999999988765
Q ss_pred cCCCchhhhhcCC
Q 014789 298 SHRQPKLECIKDC 310 (418)
Q Consensus 298 ~~~~~~~~~l~~L 310 (418)
.. ....+.+..+
T Consensus 199 ~~-~~if~l~dai 210 (326)
T PRK07452 199 TT-QNSLQLADAL 210 (326)
T ss_pred Cc-CcHHHHHHHH
Confidence 43 3333344433
No 393
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.27 E-value=0.00024 Score=55.36 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=23.1
Q ss_pred EEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 56 ILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 56 ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
|+|+|+||+|||++++.+++.+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 57999999999999999999887654
No 394
>PRK10867 signal recognition particle protein; Provisional
Probab=97.25 E-value=0.041 Score=53.80 Aligned_cols=96 Identities=14% Similarity=0.123 Sum_probs=51.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh-HHHHHHHHHHHHHhhhcccccCCChHhHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD-CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 131 (418)
+..++++|++|+||||++..++..+....+ ..+.-++|...... ..-++..+.+.+.+. ........+.+......
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G--~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v-~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKK--KKVLLVAADVYRPAAIEQLKTLGEQIGVPV-FPSGDGQDPVDIAKAAL 176 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcC--CcEEEEEccccchHHHHHHHHHHhhcCCeE-EecCCCCCHHHHHHHHH
Confidence 556889999999999999999988876622 34455555444321 112222333332211 00011223444433333
Q ss_pred HHHhhcCCCceEEEEEecchhhhh
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFA 155 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~ 155 (418)
+.... ..+-+||+|=.-.+.
T Consensus 177 ~~a~~----~~~DvVIIDTaGrl~ 196 (433)
T PRK10867 177 EEAKE----NGYDVVIVDTAGRLH 196 (433)
T ss_pred HHHHh----cCCCEEEEeCCCCcc
Confidence 33222 245689999876654
No 395
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.25 E-value=0.0031 Score=57.36 Aligned_cols=99 Identities=16% Similarity=0.242 Sum_probs=56.7
Q ss_pred CceEE-EECCCCCchHHHHHHHHHHHh--hh-CCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-----hcccccCCCh
Q 014789 53 NNSIL-LLGPRGSGKIAVLELILTDLL--LE-YPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-----QLLFSKMASF 123 (418)
Q Consensus 53 ~~~il-l~G~~GtGKT~l~~~~~~~l~--~~-~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~ 123 (418)
.+.+. |+|+||+|||.++..++-... .. .+..-.++|++....-.. .-+.+|++..+... .+...+..+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~-~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSP-ERLQQIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-H-HHHHHHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCH-HHHHHHhhccccccchhhhceeeeecCCH
Confidence 34444 999999999999988775433 21 233467899987664443 34556766533211 1122233344
Q ss_pred HhHHHHHH---HHHhhcCCCceEEEEEecchhhhhh
Q 014789 124 DDNSQFMI---EMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 124 ~~~~~~l~---~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
.+..+.+. ..+.+ .+..+||||-+-.+..
T Consensus 116 ~~l~~~L~~l~~~l~~----~~ikLIVIDSIaalfr 147 (256)
T PF08423_consen 116 EELLELLEQLPKLLSE----SKIKLIVIDSIAALFR 147 (256)
T ss_dssp HHHHHHHHHHHHHHHH----SCEEEEEEETSSHHHH
T ss_pred HHHHHHHHHHHhhccc----cceEEEEecchHHHHH
Confidence 44443333 23322 3578999999876653
No 396
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=97.25 E-value=0.02 Score=48.29 Aligned_cols=27 Identities=30% Similarity=0.396 Sum_probs=20.8
Q ss_pred CceEEEECCCCCchHHHHHHHH-HHHhh
Q 014789 53 NNSILLLGPRGSGKIAVLELIL-TDLLL 79 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~-~~l~~ 79 (418)
+.++++.||+|+|||+.....+ ..+.+
T Consensus 14 ~~~~li~aptGsGKT~~~~~~~l~~~~~ 41 (169)
T PF00270_consen 14 GKNVLISAPTGSGKTLAYILPALNRLQE 41 (169)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCccHHHHHHHHHhhhcc
Confidence 4679999999999999888544 44443
No 397
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.25 E-value=0.00038 Score=62.29 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=19.2
Q ss_pred eEEEECCCCCchHHHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l 77 (418)
..+|.||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 48899999999999888888877
No 398
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.0017 Score=58.15 Aligned_cols=43 Identities=23% Similarity=0.269 Sum_probs=30.5
Q ss_pred eEEEEEecchh-hhhhcchhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 142 KTIIFVLDEFD-LFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 142 ~~~viilDEid-~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
.|-+++|||-- -+....+..+|.++...... ...|+.++.+..
T Consensus 157 ~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~ 200 (254)
T COG1121 157 NPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLG 200 (254)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcH
Confidence 68899999943 33334778999998765543 567777887754
No 399
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.25 E-value=0.0053 Score=57.51 Aligned_cols=102 Identities=10% Similarity=0.116 Sum_probs=57.7
Q ss_pred CceEEEECCCCCchHHHHHHHHHH--HhhhC-CCCeEEEEEccccCCChHHHHHHHHHHHHHhhh-----cccccCCChH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD--LLLEY-PDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-----LLFSKMASFD 124 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~--l~~~~-~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~ 124 (418)
+....|+||||+|||+++..++-. +.... +..-.++|++....-.+. -+.++++.++.... +.+.+..+.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~e-Ri~~~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPD-RIRAIAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHH-HHHHHHHHcCCChHHhcCcEEEecCCCHH
Confidence 556679999999999999887743 32211 223567888865543333 35566766643321 1122333444
Q ss_pred hHHHHHHHHHhhcCCCceEEEEEecchhhhhh
Q 014789 125 DNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 125 ~~~~~l~~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
...+.+........ ...+-+||||-+-.+..
T Consensus 175 ~~~~~l~~l~~~i~-~~~~~LvVIDSisal~r 205 (313)
T TIGR02238 175 HQMELLDYLAAKFS-EEPFRLLIVDSIMALFR 205 (313)
T ss_pred HHHHHHHHHHHHhh-ccCCCEEEEEcchHhhh
Confidence 44443333221111 23577899999886643
No 400
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.24 E-value=0.0031 Score=54.92 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=20.2
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
...+.+.||.|||||.++-+.+-++-..
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~ 46 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKE 46 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 4578899999999999998888655433
No 401
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.24 E-value=0.0033 Score=58.53 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=57.4
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh-cccccCCChHhHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-LLFSKMASFDDNSQFMI 131 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~~l~ 131 (418)
++.+-|+||+|+|||+++-.++....... ..++++++...-+ ...+.+++.... .....+.+.++.++.+.
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g---~~~a~ID~e~~ld-----~~~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQG---GICAFIDAEHALD-----PEYAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEESSS--------HHHHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhccc---ceeEEecCcccch-----hhHHHhcCccccceEEecCCcHHHHHHHHH
Confidence 44567999999999999999888876553 6678888744433 345556655432 22334455666666666
Q ss_pred HHHhhcCCCceEEEEEecchhhhhhc
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQG 157 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~~ 157 (418)
.+++.. ...+||+|-+..+.++
T Consensus 125 ~lirsg----~~~lVVvDSv~al~p~ 146 (322)
T PF00154_consen 125 QLIRSG----AVDLVVVDSVAALVPK 146 (322)
T ss_dssp HHHHTT----SESEEEEE-CTT-B-H
T ss_pred HHhhcc----cccEEEEecCcccCCH
Confidence 666543 3558899999888764
No 402
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.23 E-value=0.0022 Score=69.83 Aligned_cols=147 Identities=21% Similarity=0.248 Sum_probs=91.2
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIE 132 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 132 (418)
+.++++-|.||+|||+++.++++..... .++||-...++.-+++ |... |...++.+.=.-.-++.
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~k------liRINLSeQTdL~DLf-------Gsd~--Pve~~Gef~w~dapfL~ 1607 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKK------LIRINLSEQTDLCDLF-------GSDL--PVEEGGEFRWMDAPFLH 1607 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCc------eEEeeccccchHHHHh-------CCCC--CcccCceeEecccHHHH
Confidence 6689999999999999999999987754 4888877776532222 2111 12222322211122333
Q ss_pred HHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc-----------CCCcEEEEEeccCCChH---HHHHHHhhcc
Q 014789 133 MLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS-----------VTSQAVVIGVSCRLDAD---QLLEKRVRSR 198 (418)
Q Consensus 133 ~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~-----------~~~~~~lI~~s~~~~~~---~~l~~~v~sr 198 (418)
.++. ..-+++||+.......-+-|...+|.... ...++.|.++-|+.+-. .-|.+....|
T Consensus 1608 amr~------G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nR 1681 (4600)
T COG5271 1608 AMRD------GGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNR 1681 (4600)
T ss_pred Hhhc------CCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhh
Confidence 3433 34678999976644333334444443211 22466777777775432 2455666778
Q ss_pred cCceEEEecCCCHHHHHHHHHHHh
Q 014789 199 FSHRKLLFLPPSKEDMQRLLEHIL 222 (418)
Q Consensus 199 ~~~~~i~~~~~~~~e~~~il~~~l 222 (418)
|+ .+.+..|+.+++..|..+..
T Consensus 1682 Fs--vV~~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1682 FS--VVKMDGLTTDDITHIANKMY 1703 (4600)
T ss_pred hh--eEEecccccchHHHHHHhhC
Confidence 84 68899999999999988865
No 403
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.22 E-value=0.00072 Score=58.04 Aligned_cols=38 Identities=39% Similarity=0.563 Sum_probs=28.1
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccc
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGL 93 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~ 93 (418)
++..+.|.||.|+||||+++.++..+....+ .+.+++.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G----~i~~~g~ 64 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQG----EITLDGV 64 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCC----EEEECCE
Confidence 4678889999999999999998876543322 2455654
No 404
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.0082 Score=62.94 Aligned_cols=154 Identities=16% Similarity=0.192 Sum_probs=73.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCC--ChHHHHHHHHHHHHHhhh------cccccCCChH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHS--DDCCAFKEIARQLCMEHQ------LLFSKMASFD 124 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~--~~~~~~~~i~~~l~~~~~------~~~~~~~~~~ 124 (418)
...++|.||+|+||||-+-.++-+..-.. .- .|-|.... ...++-..++++++.+.+ +.+....+..
T Consensus 65 ~~vvii~getGsGKTTqlP~~lle~g~~~--~g---~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s~~ 139 (845)
T COG1643 65 NQVVIIVGETGSGKTTQLPQFLLEEGLGI--AG---KIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPR 139 (845)
T ss_pred CCEEEEeCCCCCChHHHHHHHHHhhhccc--CC---eEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCCCC
Confidence 56899999999999999988776543211 01 12221111 112223344444443321 0111111111
Q ss_pred hH----HH-HHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhh-hccCCCcEEEEEeccCCChHHHHHHHhh--
Q 014789 125 DN----SQ-FMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDA-MQSVTSQAVVIGVSCRLDADQLLEKRVR-- 196 (418)
Q Consensus 125 ~~----~~-~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~-~~~~~~~~~lI~~s~~~~~~~~l~~~v~-- 196 (418)
.. .+ .|...+..-..-.++.+|||||+|.=.-+. +++..++.. .......+-+|.+|...+ .+.+...+.
T Consensus 140 Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~t-DilLgllk~~~~~rr~DLKiIimSATld-~~rfs~~f~~a 217 (845)
T COG1643 140 TRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNT-DILLGLLKDLLARRRDDLKLIIMSATLD-AERFSAYFGNA 217 (845)
T ss_pred ceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHH-HHHHHHHHHHHhhcCCCceEEEEecccC-HHHHHHHcCCC
Confidence 10 11 122222211123467899999999654432 444444433 333333477777777666 343333222
Q ss_pred ------cccCceEEEe-cCCCHHH
Q 014789 197 ------SRFSHRKLLF-LPPSKED 213 (418)
Q Consensus 197 ------sr~~~~~i~~-~~~~~~e 213 (418)
.|-.+..|++ ++...++
T Consensus 218 pvi~i~GR~fPVei~Y~~~~~~d~ 241 (845)
T COG1643 218 PVIEIEGRTYPVEIRYLPEAEADY 241 (845)
T ss_pred CEEEecCCccceEEEecCCCCcch
Confidence 2333445677 4444444
No 405
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.17 E-value=0.00053 Score=60.17 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.2
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
+..++|+||.|+||||+++.++..
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHHH
Confidence 467999999999999999999843
No 406
>PRK07078 hypothetical protein; Validated
Probab=97.17 E-value=0.019 Score=60.00 Aligned_cols=91 Identities=12% Similarity=0.025 Sum_probs=54.5
Q ss_pred CChhhHHHHHhccC--CCchhhhhcCCChHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHhhcCCCCccChhHHHHHH
Q 014789 286 LSFENFKTALSNSH--RQPKLECIKDCSILELYILVCLKRLEVKEQNSYNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAF 363 (418)
Q Consensus 286 it~~~v~~a~~~~~--~~~~~~~l~~L~~~~~~iL~a~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~ 363 (418)
..++.|.+|..+.. .+.+...+..+. . ......++..++|+.|+.+|+..|..+ .+++ .+.
T Consensus 658 ~~P~~V~~at~eY~~e~D~v~~Fl~e~c-----------~--~~~~~~~~~~~LY~~Y~~wc~~~G~~~-~s~k---~F~ 720 (759)
T PRK07078 658 DPPQSVVEATEEYFEAEDALGQWIEERC-----------E--RGANAKELTAELFNDWKEWAERAGEFV-GSQK---RFS 720 (759)
T ss_pred CCCHHHHHHHHHHHHhCChHHHHHHHhc-----------e--eCCCCceeHHHHHHHHHHHHHHcCCCC-CCHH---HHH
Confidence 34567777776553 334444443321 1 112345789999999999999998754 4544 466
Q ss_pred HHHHhCCcceeecCCCCccccccccEEEecCHH
Q 014789 364 EHLLQRELICFTDNRGYSQSVEFRPVKLLISSI 396 (418)
Q Consensus 364 ~~L~~~~~i~~~~~~g~~~~~~~~~~~l~~~~~ 396 (418)
+.|.+.|+.....+.| ..-|.-|.|...++
T Consensus 721 ~~L~~~Gf~~~r~~~g---~~~~~Gi~L~~~~~ 750 (759)
T PRK07078 721 DLLATRGFEKWRLTGG---LRGFRGIGLKPKPY 750 (759)
T ss_pred HHHHhcCCceeeccCC---cEEEeceEEecccc
Confidence 7788888765432222 12356677765544
No 407
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=97.16 E-value=0.00045 Score=64.99 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=36.0
Q ss_pred eEEEEEecchhhhhhc--chhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHH
Q 014789 142 KTIIFVLDEFDLFAQG--KQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEK 193 (418)
Q Consensus 142 ~~~viilDEid~l~~~--~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~ 193 (418)
+|.++++|||+...+. .+.+..++.++... ..+.++++|++.++.+.|.|
T Consensus 525 rpn~~~iDEF~AhLD~~TA~rVArkiselaRe--~giTlivvThrpEv~~AL~P 576 (593)
T COG2401 525 RPNVLLIDEFAAHLDELTAVRVARKISELARE--AGITLIVVTHRPEVGNALRP 576 (593)
T ss_pred CCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHH--hCCeEEEEecCHHHHhccCC
Confidence 5789999999988776 55666666666543 45678888988776655543
No 408
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.16 E-value=0.00084 Score=58.85 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=20.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
+..++|+||.|+|||++++.++..
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999987643
No 409
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.14 E-value=0.00052 Score=56.20 Aligned_cols=42 Identities=33% Similarity=0.453 Sum_probs=31.4
Q ss_pred EEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHH
Q 014789 56 ILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCM 111 (418)
Q Consensus 56 ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~ 111 (418)
+.|+|||||||||+++.+++.+.-++ + + ...+++++++..+.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~------v--s------aG~iFR~~A~e~gm 44 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKL------V--S------AGTIFREMARERGM 44 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCce------e--e------ccHHHHHHHHHcCC
Confidence 67999999999999999999876332 1 1 13368888887654
No 410
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=97.14 E-value=0.037 Score=52.40 Aligned_cols=164 Identities=20% Similarity=0.257 Sum_probs=98.1
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccc-c-----C-CChHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFS-K-----M-ASFDD 125 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~-~-----~-~~~~~ 125 (418)
|..+++.|+.=+.=..+...+.+.+.... ...++.++...+.+-+.+++.++.++......... . + ....-
T Consensus 89 PtA~lltGvN~~dh~~~F~~L~~~L~~~~--~~~vv~L~S~dc~~lk~~lk~iv~ql~~~~~~~~~~~~~~~~~~~~~~y 166 (330)
T PF07034_consen 89 PTALLLTGVNIPDHDLLFEQLSERLQSSV--GPYVVRLNSKDCSNLKSALKSIVRQLMSDKSDVDEDEEEEEKGQRRLNY 166 (330)
T ss_pred chHHHHhCCCCccHHHHHHHHHHHHHhCC--CcEEEEEecccchHHHHHHHHHHHHHHhcccccccccchhhcccCcCCC
Confidence 44677889888888888899988888753 36788888888888888999999998543211000 0 0 00000
Q ss_pred HHHHHHHHHh----------------hcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--CCCcEE-EEEeccCCC
Q 014789 126 NSQFMIEMLR----------------ECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--VTSQAV-VIGVSCRLD 186 (418)
Q Consensus 126 ~~~~l~~~l~----------------~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--~~~~~~-lI~~s~~~~ 186 (418)
.++.+.+... ......+|+||+|.+++.+.. .+|..|+..... ...|++ |+|+++..+
T Consensus 167 d~~~L~~wy~~~~~~~~~~~~~~~~~~~~~~~~~lVIi~eD~EsF~~---~VL~dlI~ils~~~~~lP~vli~GiaTs~~ 243 (330)
T PF07034_consen 167 DMDILAAWYQNNTKKNDSPSKQKNFSSSRDKSPPLVIIFEDFESFDS---QVLQDLILILSSYLDRLPFVLIFGIATSVE 243 (330)
T ss_pred CHHHHHHHHHhhhccccchhhhcccccccccCCCEEEEEcccccCCH---HHHHHHHHHHHhccCCcCEEEEEecCCChH
Confidence 1222222222 011233699999999999976 455554443321 234554 457777765
Q ss_pred hHH-HHHHHhhcccCceEEEecCCCHHHHHHHHHHHh
Q 014789 187 ADQ-LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHIL 222 (418)
Q Consensus 187 ~~~-~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l 222 (418)
+.. .|...+.+++..+.+...+ +.+-+.++++..+
T Consensus 244 ~~~~~Lp~~~~~~L~~~~F~~~~-~~~~l~~v~~~~l 279 (330)
T PF07034_consen 244 AFHSRLPRSTLSLLRIKKFQLQS-SSEILERVLEKVL 279 (330)
T ss_pred HHHhhCCHHHHhhcCceEEEeCC-hHHHHHHHHHHHh
Confidence 543 5667778888655444433 2345556666654
No 411
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.13 E-value=0.0084 Score=50.60 Aligned_cols=126 Identities=13% Similarity=0.075 Sum_probs=65.1
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEE-EEccccCCChHHHHHHHHHHHHHhh-hc--ccccCCChHh---H
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLLLEYPDTISVI-KLNGLLHSDDCCAFKEIARQLCMEH-QL--LFSKMASFDD---N 126 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v-~in~~~~~~~~~~~~~i~~~l~~~~-~~--~~~~~~~~~~---~ 126 (418)
+-+.+++++|.|||+++-.++-...... .++.++ ++-+.....+..++..+ .+.... +. .+.. ....+ .
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g-~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~-~~~~~~~~~ 81 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHG-KKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWET-QNREADTAI 81 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCC-CeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecC-CCcHHHHHH
Confidence 4678899999999999988877665543 224333 34443334444444332 111000 00 0000 11111 1
Q ss_pred HHHHHHHHhhcCCCceEEEEEecchhhhhhc---chhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 127 SQFMIEMLRECGLAHKTIIFVLDEFDLFAQG---KQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 127 ~~~l~~~l~~~~~~~~~~viilDEid~l~~~---~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
.+..++..++.-..+.+-+|||||+-..... ..+.+..+++ ..+..+-||.|....+
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~---~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQ---ERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHH---hCCCCCEEEEECCCCC
Confidence 2222222222212346789999999877664 2334444443 3446678888887653
No 412
>PRK13948 shikimate kinase; Provisional
Probab=97.12 E-value=0.0053 Score=52.65 Aligned_cols=27 Identities=22% Similarity=0.148 Sum_probs=24.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+.+++|.|.+|+||||+.+.+++.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998875
No 413
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.10 E-value=0.079 Score=51.77 Aligned_cols=42 Identities=24% Similarity=0.200 Sum_probs=30.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCC
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHS 96 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~ 96 (418)
+..++++|++|+||||++..++..+....+ ..+..++|....
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g--~kV~lV~~D~~R 140 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQG--KKVLLVACDLYR 140 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCC--CeEEEEeccccc
Confidence 457889999999999999999988753222 445666665543
No 414
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.10 E-value=0.0019 Score=58.03 Aligned_cols=40 Identities=28% Similarity=0.279 Sum_probs=29.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccC
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLH 95 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~ 95 (418)
.+..+.|.||.||||||+++.++.-+....+ .|++++...
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G----~V~l~g~~i 66 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSG----EVLLDGKDI 66 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCC----EEEECCCch
Confidence 4667889999999999999999987764332 255555443
No 415
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.049 Score=51.58 Aligned_cols=58 Identities=12% Similarity=0.052 Sum_probs=33.7
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEE
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKL 90 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~i 90 (418)
-+..|+...+-+.- .+..-...+...++|+|++|||||.++.++..-.... ++.++++
T Consensus 156 ~lLVRkpalel~~~-~r~~d~~~P~~r~vL~Ge~GtGKSiaL~qa~h~a~~~---~wlIlhi 213 (461)
T KOG3928|consen 156 VLLVRKPALELLLY-KRLVDPMHPVKRFVLDGEPGTGKSIALAQAVHYAADQ---KWLILHI 213 (461)
T ss_pred hheechHHHHHHHH-hhhccccCcceEEEEeCCCCCchhhHHHHHHHHHhcC---CeEEEEC
Confidence 34556665554432 2222122345678999999999998777665543332 2445544
No 416
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.0028 Score=53.11 Aligned_cols=116 Identities=22% Similarity=0.225 Sum_probs=59.9
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHH-H
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQF-M 130 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~-l 130 (418)
++..+.|.|+.|+||||+++.++..+.... -.+++++....... .......++ +....|..+.... +
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~----G~i~~~~~~~~~~~--~~~~~~~i~------~~~qlS~G~~~r~~l 91 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTS----GEILIDGKDIAKLP--LEELRRRIG------YVPQLSGGQRQRVAL 91 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc----cEEEECCEEcccCC--HHHHHhceE------EEeeCCHHHHHHHHH
Confidence 467888999999999999999887654322 23566664332210 001111110 0000222222111 1
Q ss_pred HHHHhhcCCCceEEEEEecchhhhhhc-chhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 131 IEMLRECGLAHKTIIFVLDEFDLFAQG-KQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 131 ~~~l~~~~~~~~~~viilDEid~l~~~-~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
...+. ..|-++++||...-.+. ....++.++...... ...++.+|+..+
T Consensus 92 ~~~l~-----~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~--~~tii~~sh~~~ 141 (157)
T cd00267 92 ARALL-----LNPDLLLLDEPTSGLDPASRERLLELLRELAEE--GRTVIIVTHDPE 141 (157)
T ss_pred HHHHh-----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHH
Confidence 22222 14789999997644432 445566655443222 346777776643
No 417
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.08 E-value=0.007 Score=51.25 Aligned_cols=87 Identities=21% Similarity=0.176 Sum_probs=47.4
Q ss_pred EEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHh
Q 014789 56 ILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLR 135 (418)
Q Consensus 56 ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~ 135 (418)
++|+|++|+|||+++..++.... -.++|+.-....+. .+-..|...- .. .+...+..+....+.+.+.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~------~~~~y~at~~~~d~-em~~rI~~H~-~~----R~~~w~t~E~~~~l~~~l~ 69 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELG------GPVTYIATAEAFDD-EMAERIARHR-KR----RPAHWRTIETPRDLVSALK 69 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC------CCeEEEEccCcCCH-HHHHHHHHHH-Hh----CCCCceEeecHHHHHHHHH
Confidence 68999999999999999987622 23355543332222 2222232211 11 1122233344445555554
Q ss_pred hcCCCceEEEEEecchhhhhhc
Q 014789 136 ECGLAHKTIIFVLDEFDLFAQG 157 (418)
Q Consensus 136 ~~~~~~~~~viilDEid~l~~~ 157 (418)
... .+-+|+||-+..+..+
T Consensus 70 ~~~---~~~~VLIDclt~~~~n 88 (169)
T cd00544 70 ELD---PGDVVLIDCLTLWVTN 88 (169)
T ss_pred hcC---CCCEEEEEcHhHHHHH
Confidence 432 3458999998766654
No 418
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.08 E-value=0.00038 Score=57.22 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.6
Q ss_pred EEEECCCCCchHHHHHHHHHHHh
Q 014789 56 ILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 56 ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
++++|+||+||||+++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68999999999999999987754
No 419
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.08 E-value=0.0089 Score=54.68 Aligned_cols=28 Identities=39% Similarity=0.526 Sum_probs=24.3
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
..+.++|+|++|+||||+++.++..+..
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 3567999999999999999999888754
No 420
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.07 E-value=0.0024 Score=54.45 Aligned_cols=28 Identities=39% Similarity=0.553 Sum_probs=23.9
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
.+..+.|.||.|+||||+++.++..+..
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 54 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRP 54 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 4678889999999999999999876543
No 421
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.07 E-value=0.00048 Score=55.39 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.5
Q ss_pred EEEECCCCCchHHHHHHHHHHH
Q 014789 56 ILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 56 ill~G~~GtGKT~l~~~~~~~l 77 (418)
|+|.|+||+||||+++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999886
No 422
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.023 Score=54.04 Aligned_cols=41 Identities=24% Similarity=0.178 Sum_probs=29.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccC
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLH 95 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~ 95 (418)
++..++|.||+|+||||++..++..+.... ..+..+++...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g---~~V~lItaDty 245 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN---RTVGFITTDTF 245 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCcc
Confidence 366788999999999999999998775443 33444554443
No 423
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.06 E-value=0.0019 Score=54.61 Aligned_cols=117 Identities=18% Similarity=0.206 Sum_probs=61.0
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHH
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFM 130 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 130 (418)
.++..+.|.||.|+||||+++.++..+.... -.+.+++....... ........++ +....|..+.....
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~----G~v~~~g~~~~~~~-~~~~~~~~i~------~~~qLS~G~~qrl~ 92 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDS----GEILVDGKEVSFAS-PRDARRAGIA------MVYQLSVGERQMVE 92 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCC----eEEEECCEECCcCC-HHHHHhcCeE------EEEecCHHHHHHHH
Confidence 3567888999999999999998876654322 23566664432210 0000000110 00002222222221
Q ss_pred H-HHHhhcCCCceEEEEEecchhhhhh-cchhHHHHHHhhhccCCCcEEEEEeccCC
Q 014789 131 I-EMLRECGLAHKTIIFVLDEFDLFAQ-GKQRLLYSLLDAMQSVTSQAVVIGVSCRL 185 (418)
Q Consensus 131 ~-~~l~~~~~~~~~~viilDEid~l~~-~~~~~L~~l~~~~~~~~~~~~lI~~s~~~ 185 (418)
. ..+- ..|-++++||--.-.+ .....+..++..... ....+|.+|.+.
T Consensus 93 laral~-----~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~~tiii~sh~~ 142 (163)
T cd03216 93 IARALA-----RNARLLILDEPTAALTPAEVERLFKVIRRLRA--QGVAVIFISHRL 142 (163)
T ss_pred HHHHHh-----cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 1 1221 2578999999654333 355666666654322 244677777664
No 424
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.05 E-value=0.0077 Score=51.11 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=46.2
Q ss_pred eEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEML 134 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l 134 (418)
.++|+|+||||||+++..++..+.. .++|+.-....+ ...-..+........ ..-...+. ...+.+.+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~------~~~~iat~~~~~-~e~~~ri~~h~~~R~----~~w~t~E~-~~~l~~~i 70 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL------QVLYIATAQPFD-DEMAARIAHHRQRRP----AHWQTVEE-PLDLAELL 70 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC------CcEeCcCCCCCh-HHHHHHHHHHHhcCC----CCCeEecc-cccHHHHH
Confidence 5899999999999999999877532 235555433222 233344433332111 11111111 11233333
Q ss_pred hhcCCCceEEEEEecchhhhhh
Q 014789 135 RECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 135 ~~~~~~~~~~viilDEid~l~~ 156 (418)
.... ..+-+++||-+..+..
T Consensus 71 ~~~~--~~~~~VlID~Lt~~~~ 90 (170)
T PRK05800 71 RADA--APGRCVLVDCLTTWVT 90 (170)
T ss_pred Hhhc--CCCCEEEehhHHHHHH
Confidence 3311 1345799999877754
No 425
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.0031 Score=56.37 Aligned_cols=29 Identities=38% Similarity=0.567 Sum_probs=24.1
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
++..++|.|++|+||||+++.+.--+...
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~ 57 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPT 57 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCcCcCC
Confidence 46689999999999999999887665544
No 426
>PRK08118 topology modulation protein; Reviewed
Probab=97.04 E-value=0.00057 Score=57.95 Aligned_cols=25 Identities=32% Similarity=0.522 Sum_probs=22.6
Q ss_pred eEEEECCCCCchHHHHHHHHHHHhh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
.++|+||||+||||+++.+++.+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999988764
No 427
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.03 E-value=0.019 Score=52.79 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=29.4
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccC
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLH 95 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~ 95 (418)
+..+.++||+|+||||++..++..+.... ..+.-++|...
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g---~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQG---KSVLLAAGDTF 111 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEeCCCC
Confidence 56788999999999999999998886543 34444554443
No 428
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.02 E-value=0.018 Score=47.70 Aligned_cols=129 Identities=11% Similarity=0.106 Sum_probs=76.3
Q ss_pred ECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC--hHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhh
Q 014789 59 LGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD--DCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRE 136 (418)
Q Consensus 59 ~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 136 (418)
.+.+||||||++.++.+-+.++ -++..-.... +..++..+++.| ..
T Consensus 5 IAtiGCGKTTva~aL~~LFg~w-------gHvQnDnI~~k~~~~f~~~~l~~L-------------------------~~ 52 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGEW-------GHVQNDNITGKRKPKFIKAVLELL-------------------------AK 52 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCCC-------CccccCCCCCCCHHHHHHHHHHHH-------------------------hh
Confidence 5889999999999888876543 2333222222 333444333333 11
Q ss_pred cCCCceEEEEEecchhhhhhcchhHHHHHHhhhc-c--CCCcEEEEEeccCC--Ch---HHHHHHHhhcccC-ceEEEec
Q 014789 137 CGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ-S--VTSQAVVIGVSCRL--DA---DQLLEKRVRSRFS-HRKLLFL 207 (418)
Q Consensus 137 ~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~-~--~~~~~~lI~~s~~~--~~---~~~l~~~v~sr~~-~~~i~~~ 207 (418)
...-++|.|-=.+....++.++..+-.... . ...++-+|+..=.. +. .+....|+..|-. ++.|...
T Consensus 53 ----~~~~vViaDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~ 128 (168)
T PF08303_consen 53 ----DTHPVVIADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKAD 128 (168)
T ss_pred ----CCCCEEEEeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecC
Confidence 134578889766665555444433332211 0 12355566554332 22 2344678888876 6778888
Q ss_pred CCCHHHHHHHHHHHhc
Q 014789 208 PPSKEDMQRLLEHILS 223 (418)
Q Consensus 208 ~~~~~e~~~il~~~l~ 223 (418)
.++......|+...+.
T Consensus 129 ~~~~~~~~~Im~gFi~ 144 (168)
T PF08303_consen 129 SKDEKKVEGIMEGFIK 144 (168)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888889999888775
No 429
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.01 E-value=0.0083 Score=53.52 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=29.0
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcccc
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLL 94 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~ 94 (418)
.+..++|.|+||+|||+++..++....... -.++|++...
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g---~~~~y~s~e~ 54 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNG---EKAMYISLEE 54 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECCC
Confidence 366788999999999999998886644332 3456666543
No 430
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.00 E-value=0.002 Score=54.94 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=23.0
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
++..+.|.||.|+||||+++.++..+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467889999999999999998876543
No 431
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.99 E-value=0.0052 Score=68.56 Aligned_cols=164 Identities=21% Similarity=0.299 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHH-HHHHHHHHhh
Q 014789 35 SNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFK-EIARQLCMEH 113 (418)
Q Consensus 35 ~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~-~i~~~l~~~~ 113 (418)
...+....-+..+... ..-+++|-||.|+|||+++..+++....+ ++++|-..+++....++ .+....
T Consensus 423 ~~vq~~la~~~~a~~~-~~~pillqG~tssGKtsii~~la~~~g~~------~vrinnhehtd~qeyig~y~~~~~---- 491 (1856)
T KOG1808|consen 423 PRVQKNLADLARAISS-GKFPILLQGPTSSGKTSIIKELARATGKN------IVRINNHEHTDLQEYIGTYVADDN---- 491 (1856)
T ss_pred HHHHHHHHHHHHHHhc-CCCCeEEecCcCcCchhHHHHHHHHhccC------ceehhccccchHHHHHHhhhcCCC----
Confidence 3344444444444332 23479999999999999999999988754 48888888877544433 111111
Q ss_pred hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhh-cc----------CCCcEEEEEec
Q 014789 114 QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAM-QS----------VTSQAVVIGVS 182 (418)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~-~~----------~~~~~~lI~~s 182 (418)
+...+.+. .+...+. +...+|+||+.......-.+|..++++- +. ......+.++-
T Consensus 492 -----g~l~freg--~LV~Alr------~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatq 558 (1856)
T KOG1808|consen 492 -----GDLVFREG--VLVQALR------NGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQ 558 (1856)
T ss_pred -----CCeeeehh--HHHHHHH------hCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhc
Confidence 11122211 1222332 4568999999888776677888887762 11 11223334444
Q ss_pred cCCChH---HHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcC
Q 014789 183 CRLDAD---QLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSL 224 (418)
Q Consensus 183 ~~~~~~---~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~ 224 (418)
|..... ..+...+.+|| ..++|.-...+++..|+.++-.+
T Consensus 559 n~~~~y~grk~lsRa~~~rf--~e~~f~~~~e~e~~~i~~~~~~i 601 (1856)
T KOG1808|consen 559 NPPGTYGGRKILSRALRNRF--IELHFDDIGEEELEEILEHRCGI 601 (1856)
T ss_pred cCccccchhhhhhhcccccc--hhhhhhhcCchhhhhhhcccccC
Confidence 443221 23455566666 35778888889999999888543
No 432
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.99 E-value=0.0045 Score=71.37 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=64.2
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHH---
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQ--- 128 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~--- 128 (418)
.....+|.|++|||||++++.+.+.+.... ..++-+. .+. ..-+.+.+..+... .+....+.
T Consensus 445 ~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G---~~V~~lA---PTg--rAA~~L~e~~g~~A-------~Ti~~~l~~l~ 509 (1960)
T TIGR02760 445 TKRFIIINGFGGTGSTEIAQLLLHLASEQG---YEIQIIT---AGS--LSAQELRQKIPRLA-------STFITWVKNLF 509 (1960)
T ss_pred CCCeEEEEECCCCCHHHHHHHHHHHHHhcC---CeEEEEe---CCH--HHHHHHHHHhcchh-------hhHHHHHHhhc
Confidence 456788999999999999999998776543 2222221 111 12223333222111 00000000
Q ss_pred ------HHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 129 ------FMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 129 ------~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
.+..++.........-+|||||+-.+.. ..+..|++.......++++||=+.-
T Consensus 510 ~~~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~---~~~~~Ll~~a~~~garvVlvGD~~Q 568 (1960)
T TIGR02760 510 NDDQDHTVQGLLDKSSPFSNKDIFVVDEANKLSN---NELLKLIDKAEQHNSKLILLNDSAQ 568 (1960)
T ss_pred ccccchhHHHhhcccCCCCCCCEEEEECCCCCCH---HHHHHHHHHHhhcCCEEEEEcChhh
Confidence 0111111111112456999999998855 6788888877666688888886554
No 433
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.98 E-value=0.0017 Score=55.56 Aligned_cols=28 Identities=25% Similarity=0.567 Sum_probs=23.6
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.++..+.|.||.|+||||+++.++..+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4567888999999999999998876554
No 434
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.98 E-value=0.0051 Score=67.27 Aligned_cols=25 Identities=36% Similarity=0.578 Sum_probs=20.4
Q ss_pred CceEEEECCCCCchHHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
...++|+|++||||||.+=.++-..
T Consensus 82 ~~vvii~g~TGSGKTTqlPq~lle~ 106 (1283)
T TIGR01967 82 NQVVIIAGETGSGKTTQLPKICLEL 106 (1283)
T ss_pred CceEEEeCCCCCCcHHHHHHHHHHc
Confidence 4588999999999999887666543
No 435
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.98 E-value=0.00076 Score=57.47 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=24.3
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
++..++|+|+||||||++++.+++.+.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 466899999999999999999999874
No 436
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.98 E-value=0.0089 Score=50.60 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=24.0
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
++..+.|.||.|+||||+++.++..+..
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPW 53 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4678899999999999999999876553
No 437
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.97 E-value=0.0011 Score=54.94 Aligned_cols=39 Identities=31% Similarity=0.309 Sum_probs=31.4
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcccc
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLL 94 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~ 94 (418)
+..+.|+|.+|+||||+++.+.+.|.... ..++.+++..
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g---~~~~~LDgD~ 40 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG---IKVYLLDGDN 40 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT---S-EEEEEHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEecCcc
Confidence 45688999999999999999999998876 5667777643
No 438
>PRK14709 hypothetical protein; Provisional
Probab=96.97 E-value=0.048 Score=54.07 Aligned_cols=48 Identities=19% Similarity=0.185 Sum_probs=35.1
Q ss_pred ChhhhHHHHHHHHHHHHhcCCC--ceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 32 SPDSNYSKLKFLVSSSVTEACN--NSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 32 gr~~e~~~l~~~l~~~~~~~~~--~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
|-++-++.|.+++..++.+... ..++++|+-|.|||++++.+..-+..
T Consensus 182 gD~e~~~~lq~~lGy~L~g~~~~q~~~~l~G~G~NGKSt~~~~i~~llG~ 231 (469)
T PRK14709 182 GDDELIRFLQQWCGYCLTGDTREHALVFVFGGGGNGKSVFLNVLAGILGD 231 (469)
T ss_pred CCHHHHHHHHHHhhHhhcCCCccceEEEEECCCCCcHHHHHHHHHHHHhh
Confidence 4445566677777777766542 34668999999999999988777654
No 439
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.96 E-value=0.0036 Score=53.47 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.2
Q ss_pred CCceEEEECCCCCchHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELIL 74 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~ 74 (418)
++..+.|.||.|+||||+++.++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 46678899999999999999875
No 440
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.96 E-value=0.024 Score=56.29 Aligned_cols=57 Identities=18% Similarity=0.331 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHhc------CCCceEEEECCCCCchHHHHHHHHHHHhhhC-CCCeEEEEEc
Q 014789 35 SNYSKLKFLVSSSVTE------ACNNSILLLGPRGSGKIAVLELILTDLLLEY-PDTISVIKLN 91 (418)
Q Consensus 35 ~e~~~l~~~l~~~~~~------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~-~~~~~~v~in 91 (418)
+....+...|...+.- ..+..+.|+||+|+||||++..++..+.... +.++.++..+
T Consensus 326 ~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD 389 (559)
T PRK12727 326 RGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD 389 (559)
T ss_pred hHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc
Confidence 3445555555553321 2367888999999999999999988776543 2234444443
No 441
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.96 E-value=0.024 Score=51.49 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=64.1
Q ss_pred cCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcc---ccCCChHHHHHHHHHHHHHhhhcccccCCChHhH
Q 014789 50 EACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNG---LLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDN 126 (418)
Q Consensus 50 ~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~---~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 126 (418)
..+.+-+|++||+||||||++-++...++...+. .++-+.- +.+.+.+.++.+ ++++. .....
T Consensus 122 ~~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~--HIlTIEDPIE~vh~skkslI~Q--REvG~----------dT~sF 187 (353)
T COG2805 122 ESPRGLILVTGPTGSGKSTTLAAMIDYINKHKAK--HILTIEDPIEYVHESKKSLINQ--REVGR----------DTLSF 187 (353)
T ss_pred hCCCceEEEeCCCCCcHHHHHHHHHHHHhccCCc--ceEEecCchHhhhcchHhhhhH--HHhcc----------cHHHH
Confidence 3456779999999999999999999999877642 2222211 112222222211 11211 12223
Q ss_pred HHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHH
Q 014789 127 SQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQL 190 (418)
Q Consensus 127 ~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~ 190 (418)
...+...|++ .|-||++=|+-.+ +-++.-+...+ ..-.|.++-...+-.+.
T Consensus 188 ~~aLraALRe-----DPDVIlvGEmRD~-----ETi~~ALtAAE---TGHLV~~TLHT~sA~~t 238 (353)
T COG2805 188 ANALRAALRE-----DPDVILVGEMRDL-----ETIRLALTAAE---TGHLVFGTLHTNSAAKT 238 (353)
T ss_pred HHHHHHHhhc-----CCCEEEEeccccH-----HHHHHHHHHHh---cCCEEEEecccccHHHH
Confidence 3445555655 5789999998655 44444444433 33456676655543333
No 442
>PRK06547 hypothetical protein; Provisional
Probab=96.95 E-value=0.0014 Score=55.79 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=25.8
Q ss_pred HhcCCCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 48 VTEACNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 48 ~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+....+..+.|+|++|+||||+++.+++.+.
T Consensus 10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 10 LCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred hhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3455677888999999999999999998753
No 443
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=96.95 E-value=0.0099 Score=63.64 Aligned_cols=160 Identities=16% Similarity=0.218 Sum_probs=91.9
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhC-CCCeEEEEEccccC----------------CChH----HHHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEY-PDTISVIKLNGLLH----------------SDDC----CAFKEIARQLCM 111 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~-~~~~~~v~in~~~~----------------~~~~----~~~~~i~~~l~~ 111 (418)
.+++++.|.+|+|||+.++.+.-.+...+ |..+..+.++.... +++. .+++++...+..
T Consensus 530 ~~hllv~G~tgsGKSv~lnt~i~Sll~~~~P~ev~~~~iD~k~~~L~~~~~iPHl~~~v~td~~~k~~~al~~~~~eme~ 609 (858)
T COG1674 530 AGHLLIAGATGSGKSVALNTMILSLLYTHSPEEVRFYIIDPKMLELAAYDGLPHLGDPVVTDEKEKAEKALAELVAEMER 609 (858)
T ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHhCChhHeEEEEEcCCCCeeeeccCCCccccccccCcHHHHHHHHHHHHHHHHH
Confidence 58999999999999999998877666544 55566666653221 1122 122222222221
Q ss_pred hhhcc-cccCCChHhHHHHHHHHHhh--cCCCceEEEEEecchhhhhhc-chhHHHHHHhhhccC-CCcEEEEEeccCCC
Q 014789 112 EHQLL-FSKMASFDDNSQFMIEMLRE--CGLAHKTIIFVLDEFDLFAQG-KQRLLYSLLDAMQSV-TSQAVVIGVSCRLD 186 (418)
Q Consensus 112 ~~~~~-~~~~~~~~~~~~~l~~~l~~--~~~~~~~~viilDEid~l~~~-~~~~L~~l~~~~~~~-~~~~~lI~~s~~~~ 186 (418)
..... ..+..+.+ .+.+.... ....-+++++||||+..|... .+++-..+.++.+.. ...+.+|.+|++.+
T Consensus 610 R~~l~~~~~vr~i~----~yn~k~~~~~~~~~lP~iviiiDe~adlm~~~~k~ve~~i~rLa~~ara~GIHlilatqRps 685 (858)
T COG1674 610 RYKLFSEKGVRNIE----GYNEKIAGAIPDEELPYIVIIIDEYADLMMVAGKELEELIARLAQKGRAAGIHLILATQRPS 685 (858)
T ss_pred HHHHHHHhccCcHH----HHHhhhhccCCCCCCCeEEEEEcchHHHhhhhhHHHHHHHHHHHHhhhhcceEEEEecCCCC
Confidence 11000 00011111 11111110 112336899999999888764 444666666665543 35888999999876
Q ss_pred hHHHHHHHhhcccCceEEEecCCCHHHHHHHHH
Q 014789 187 ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLE 219 (418)
Q Consensus 187 ~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~ 219 (418)
.+.... ++..|. .+|.|.-.+..+-+-|+.
T Consensus 686 -~dVit~-ikanip-srIaf~v~s~~dsr~il~ 715 (858)
T COG1674 686 -VDVITG-IKANIP-TRIALRLSSKIDSRLILG 715 (858)
T ss_pred -cchhHH-HHhCCc-ceEEEEEcCccceeeecc
Confidence 344444 777776 357887777666666655
No 444
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.95 E-value=0.0014 Score=56.16 Aligned_cols=30 Identities=30% Similarity=0.473 Sum_probs=26.1
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
.+..++|.|++|+||||+++.+...+....
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~ 35 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKY 35 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 466889999999999999999999987543
No 445
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.95 E-value=0.00094 Score=47.39 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.5
Q ss_pred EEEECCCCCchHHHHHHHHHHH
Q 014789 56 ILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 56 ill~G~~GtGKT~l~~~~~~~l 77 (418)
+.|.|++|+|||++++.+.+.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 446
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.95 E-value=0.0089 Score=50.69 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=23.2
Q ss_pred hcCCCceEEEECCCCCchHHHHHHHHHH
Q 014789 49 TEACNNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 49 ~~~~~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.......++|.|++|+|||++++.+...
T Consensus 10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 10 KSSEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccCCccEEEEEccCCCCHHHHHHHHhcC
Confidence 4444667999999999999999998764
No 447
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.94 E-value=0.018 Score=55.93 Aligned_cols=148 Identities=13% Similarity=0.141 Sum_probs=70.3
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhccccc---CCChHhHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSK---MASFDDNSQF 129 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~~~~~ 129 (418)
+..++++|++|+||||++..++..+.... ..+.-++|..+.. ..+.++ +......+.++.. ...+......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G---~kV~lV~~D~~R~--aA~eQL-k~~a~~~~vp~~~~~~~~dp~~i~~~ 173 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKG---FKPCLVCADTFRA--GAFDQL-KQNATKARIPFYGSYTESDPVKIASE 173 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEcCcccch--hHHHHH-HHHhhccCCeEEeecCCCCHHHHHHH
Confidence 45788999999999999999998887543 3445555544432 122221 1112222222221 1122222111
Q ss_pred HHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccC-CCcEEEEEeccC-CChHHHHHHHhhcccCceEEEec
Q 014789 130 MIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSV-TSQAVVIGVSCR-LDADQLLEKRVRSRFSHRKLLFL 207 (418)
Q Consensus 130 l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~-~~~~~lI~~s~~-~~~~~~l~~~v~sr~~~~~i~~~ 207 (418)
-.+.++. ...-+||||=.-.+.. ...++..+....... +..+.+|.-+.. .+.. ..-......+....+.+.
T Consensus 174 ~l~~~~~----~~~DvViIDTaGr~~~-d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~-~~a~~F~~~~~~~g~IlT 247 (429)
T TIGR01425 174 GVEKFKK----ENFDIIIVDTSGRHKQ-EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAE-AQAKAFKDSVDVGSVIIT 247 (429)
T ss_pred HHHHHHh----CCCCEEEEECCCCCcc-hHHHHHHHHHHhhhcCCcEEEEEeccccChhHH-HHHHHHHhccCCcEEEEE
Confidence 1222222 2356899997765433 233444444432221 223444443322 1211 122333344444556777
Q ss_pred CCCHH
Q 014789 208 PPSKE 212 (418)
Q Consensus 208 ~~~~~ 212 (418)
.++.+
T Consensus 248 KlD~~ 252 (429)
T TIGR01425 248 KLDGH 252 (429)
T ss_pred CccCC
Confidence 77644
No 448
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=96.94 E-value=0.0094 Score=62.31 Aligned_cols=146 Identities=16% Similarity=0.286 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHH-HHHHhhhC------CCCeEEEEEccccCCChHHHHHHHHH
Q 014789 35 SNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELI-LTDLLLEY------PDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 35 ~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~-~~~l~~~~------~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
++++.+.+..-+. ......+++|+.|+|+|||-++... ++.+.+.. ...+.+|||..+- .+..++.+
T Consensus 109 ~~fN~iQS~vFp~-aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmK-----ALa~Em~~ 182 (1230)
T KOG0952|consen 109 EEFNRIQSEVFPV-AYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMK-----ALAAEMVD 182 (1230)
T ss_pred HHHHHHHHHhhhh-hhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechH-----HHHHHHHH
Confidence 5667776665553 3345779999999999999887653 34444311 3458999997532 23444555
Q ss_pred HHHHhhh---cc---cccCCCh--HhHHHH--H------HHHHhhc-----CCCceEEEEEecchhhhhhcchhHHHH--
Q 014789 108 QLCMEHQ---LL---FSKMASF--DDNSQF--M------IEMLREC-----GLAHKTIIFVLDEFDLFAQGKQRLLYS-- 164 (418)
Q Consensus 108 ~l~~~~~---~~---~~~~~~~--~~~~~~--l------~~~l~~~-----~~~~~~~viilDEid~l~~~~~~~L~~-- 164 (418)
..+.... +. ..+.... .+..+. | ++.+.+. .-.+.-.++||||+|.|.+.+.-++..
T Consensus 183 ~~~kkl~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiV 262 (1230)
T KOG0952|consen 183 KFSKKLAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIV 262 (1230)
T ss_pred HHhhhcccccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHH
Confidence 4443321 00 0000000 000000 0 0011000 012245689999999998874444444
Q ss_pred --HHhhhccCCCcEEEEEeccCCC
Q 014789 165 --LLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 165 --l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
.++..+.....+-+||.|...+
T Consensus 263 aRtlr~vessqs~IRivgLSATlP 286 (1230)
T KOG0952|consen 263 ARTLRLVESSQSMIRIVGLSATLP 286 (1230)
T ss_pred HHHHHHHHhhhhheEEEEeeccCC
Confidence 4444455567888898887653
No 449
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=96.94 E-value=0.0091 Score=58.81 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=33.5
Q ss_pred ceEEEEEecchhhhhhc-chhHHHHHHhhhccCCCcEEEEEeccCCChHH
Q 014789 141 HKTIIFVLDEFDLFAQG-KQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQ 189 (418)
Q Consensus 141 ~~~~viilDEid~l~~~-~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~ 189 (418)
.+|-+-||||.-...+. -...+|...+. .++.+|-++.+..+..
T Consensus 587 ~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~-----~giT~iSVgHRkSL~k 631 (659)
T KOG0060|consen 587 HKPKFAILDECTSAVTEDVEGALYRKCRE-----MGITFISVGHRKSLWK 631 (659)
T ss_pred cCCceEEeechhhhccHHHHHHHHHHHHH-----cCCeEEEeccHHHHHh
Confidence 37899999998777665 56788888765 6788999998866433
No 450
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.94 E-value=0.0018 Score=55.59 Aligned_cols=39 Identities=31% Similarity=0.366 Sum_probs=28.2
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcccc
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLL 94 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~ 94 (418)
++..+.|.||.|+||||+++.++..+.... -.+.+++..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~----G~i~~~g~~ 63 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEPDS----GSILIDGED 63 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc----eEEEECCEE
Confidence 467788999999999999999886554322 225566543
No 451
>PRK06761 hypothetical protein; Provisional
Probab=96.93 E-value=0.0066 Score=55.62 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=23.9
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
..++|.|+||+||||+++.+.+.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 468899999999999999999988654
No 452
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.93 E-value=0.0015 Score=60.14 Aligned_cols=51 Identities=27% Similarity=0.387 Sum_probs=39.7
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
+.+.-.....+.+.+++...++ ...+++|+|++|+||||+++.++..+...
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~--~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVR--GRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHH--TTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred hhccCchhhHHHHHHHHhhccc--cceEEEEECCCccccchHHHHHhhhcccc
Confidence 3454455556777777777654 46799999999999999999999988766
No 453
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.92 E-value=0.0015 Score=57.16 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=19.4
Q ss_pred ceEEEECCCCCchHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELIL 74 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~ 74 (418)
+.++|+||.|+||||+++.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 369999999999999999988
No 454
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.91 E-value=0.036 Score=53.49 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=27.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcccc
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLL 94 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~ 94 (418)
+..+++.||+|+||||++..++..+....+ ..+..+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G--~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMG--KSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcC--CeEEEecccc
Confidence 345889999999999999999986643322 3344445433
No 455
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.91 E-value=0.017 Score=52.84 Aligned_cols=91 Identities=16% Similarity=0.169 Sum_probs=55.8
Q ss_pred EECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhc
Q 014789 58 LLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLREC 137 (418)
Q Consensus 58 l~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 137 (418)
||||+|+|||+++.+++-...... -.++|++....-++. -+.+++... ..........+.++....+.......
T Consensus 65 iyG~~gsGKT~lal~~~~~aq~~g---~~a~fIDtE~~l~p~-r~~~l~~~~--~d~l~v~~~~~~e~q~~i~~~~~~~~ 138 (279)
T COG0468 65 IYGPESSGKTTLALQLVANAQKPG---GKAAFIDTEHALDPE-RAKQLGVDL--LDNLLVSQPDTGEQQLEIAEKLARSG 138 (279)
T ss_pred EecCCCcchhhHHHHHHHHhhcCC---CeEEEEeCCCCCCHH-HHHHHHHhh--hcceeEecCCCHHHHHHHHHHHHHhc
Confidence 999999999999999887766554 367888865544443 344455542 11122334445555555444444433
Q ss_pred CCCceEEEEEecchhhhhh
Q 014789 138 GLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 138 ~~~~~~~viilDEid~l~~ 156 (418)
.. ..-++|+|-+-.+.+
T Consensus 139 ~~--~i~LvVVDSvaa~~r 155 (279)
T COG0468 139 AE--KIDLLVVDSVAALVR 155 (279)
T ss_pred cC--CCCEEEEecCcccch
Confidence 21 578999998755544
No 456
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.90 E-value=0.0038 Score=51.49 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=23.2
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++..+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 467788999999999999999877654
No 457
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.89 E-value=0.0025 Score=54.13 Aligned_cols=43 Identities=40% Similarity=0.433 Sum_probs=34.4
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
..+-+-||||+|||+++.+.++.+..++ ++.++.-++....+.
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~--~~aVI~~Di~t~~Da 56 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEY--KIAVITGDIYTKEDA 56 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHHhhC--CeEEEeceeechhhH
Confidence 4667899999999999999999998876 366777776665544
No 458
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.89 E-value=0.026 Score=48.80 Aligned_cols=135 Identities=17% Similarity=0.255 Sum_probs=72.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHH---hh-------h-cccc---
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCM---EH-------Q-LLFS--- 118 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~---~~-------~-~~~~--- 118 (418)
+.-++|.|+.|||||.+.+.++--+-... ..+.|+.- ..+ .++..+|+.. .. . .-++
T Consensus 28 GsL~lIEGd~~tGKSvLsqr~~YG~L~~g---~~v~yvsT--e~T----~refi~qm~sl~ydv~~~~l~G~l~~~~~~~ 98 (235)
T COG2874 28 GSLILIEGDNGTGKSVLSQRFAYGFLMNG---YRVTYVST--ELT----VREFIKQMESLSYDVSDFLLSGRLLFFPVNL 98 (235)
T ss_pred CeEEEEECCCCccHHHHHHHHHHHHHhCC---ceEEEEEe--chh----HHHHHHHHHhcCCCchHHHhcceeEEEEecc
Confidence 55678999999999999999987766554 45556642 222 3333344321 10 0 0011
Q ss_pred -----cCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc-hhHHHHHHh-hhccCCCcEEEEEeccCCChHHHH
Q 014789 119 -----KMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK-QRLLYSLLD-AMQSVTSQAVVIGVSCRLDADQLL 191 (418)
Q Consensus 119 -----~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~-~~~L~~l~~-~~~~~~~~~~lI~~s~~~~~~~~l 191 (418)
...+....++.+.+..+. ...-|+|||-+..+.... ...+.+++. ........=++|.+.++..+.+..
T Consensus 99 ~~~~~~~~~~~~~L~~l~~~~k~----~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~~l~e~~ 174 (235)
T COG2874 99 EPVNWGRRSARKLLDLLLEFIKR----WEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPSALDEDV 174 (235)
T ss_pred cccccChHHHHHHHHHHHhhHHh----hcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeChhhcCHHH
Confidence 011122334444444443 356799999999888763 223333332 222221233566677776666655
Q ss_pred HHHhhcccC
Q 014789 192 EKRVRSRFS 200 (418)
Q Consensus 192 ~~~v~sr~~ 200 (418)
.-+++|-+.
T Consensus 175 ~~rirs~~d 183 (235)
T COG2874 175 LTRIRSACD 183 (235)
T ss_pred HHHHHHhhh
Confidence 556655543
No 459
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.88 E-value=0.01 Score=49.99 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=22.1
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
++..+|+||.|+|||++++.++-.+..
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~~~ 47 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLALGG 47 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 358899999999999999997655443
No 460
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.87 E-value=0.074 Score=49.99 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 35 SNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 35 ~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
...+.+.+.+...+.. ..+..+.+.||+|+||||++..++..+...
T Consensus 87 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 87 ELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred HHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 3344455555554431 235678899999999999999999988754
No 461
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.87 E-value=0.0096 Score=61.88 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=57.4
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-hcccccCCChHhHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-QLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~l~ 131 (418)
+..+.|+||+|+|||+++..++....... -.++|++...... ...+++++... ........+.+..+..+.
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~G---~~v~yId~E~t~~-----~~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAAG---GVAAFIDAEHALD-----PDYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEECCccchh-----HHHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 56778999999999999988776654433 3457777544332 23566665432 122333334444444444
Q ss_pred HHHhhcCCCceEEEEEecchhhhhh
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
..+++ +.+.+||||-+..+.+
T Consensus 132 ~lv~~----~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 132 MLIRS----GALDIVVIDSVAALVP 152 (790)
T ss_pred HHhhc----CCCeEEEEcchhhhcc
Confidence 44433 3688999999998874
No 462
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.87 E-value=0.0025 Score=53.15 Aligned_cols=45 Identities=22% Similarity=0.248 Sum_probs=36.4
Q ss_pred HHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcccc
Q 014789 47 SVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLL 94 (418)
Q Consensus 47 ~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~ 94 (418)
......+-.+.++|.+|+||||++.++.+.|.... ..++.++|..
T Consensus 17 ~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G---~~~y~LDGDn 61 (197)
T COG0529 17 ALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKG---YHVYLLDGDN 61 (197)
T ss_pred HHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcC---CeEEEecChh
Confidence 34555677888999999999999999999999876 6667777644
No 463
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.86 E-value=0.008 Score=60.67 Aligned_cols=121 Identities=12% Similarity=0.096 Sum_probs=65.0
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-------hccc----cc-
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-------QLLF----SK- 119 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-------~~~~----~~- 119 (418)
.+..++|+|+||+|||+++..++.......+ -.++|++.... +.++.+.+ .+++... ...+ +.
T Consensus 30 ~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~g--e~~lyis~ee~--~~~i~~~~-~~~g~d~~~~~~~g~l~~~~~~~~~ 104 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTLFALQFLVNGIKRFD--EPGVFVTFEES--PEDIIRNV-ASFGWDLQKLIDEGKLFILDASPDP 104 (509)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcC--CCEEEEEccCC--HHHHHHHH-HHcCCCHHHHhhCCeEEEEecCccc
Confidence 3678889999999999999998865554422 33566665442 33333332 3333211 0000 00
Q ss_pred -------CCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--c----hhHHHHHHhhhccCCCcEEEEEecc
Q 014789 120 -------MASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--K----QRLLYSLLDAMQSVTSQAVVIGVSC 183 (418)
Q Consensus 120 -------~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--~----~~~L~~l~~~~~~~~~~~~lI~~s~ 183 (418)
....+..+..+.+.+... ++-.+|||-+..+... . ...++.+++.... ..+.++.++.
T Consensus 105 ~~~~~~~~~~~~~l~~~l~~~i~~~----~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk~--~g~TvLlt~~ 175 (509)
T PRK09302 105 SEQEEAGEYDLEALFIRIEYAIDKI----GAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLKQ--KGVTAVITGE 175 (509)
T ss_pred ccccccccccHHHHHHHHHHHHHhh----CCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHHh--CCCEEEEEEC
Confidence 012233444555555443 4668999999876432 1 2345555554432 2344555554
No 464
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.86 E-value=0.0036 Score=60.97 Aligned_cols=30 Identities=37% Similarity=0.456 Sum_probs=26.1
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
+.+-++++||+|+||||++-.+++.+....
T Consensus 257 p~GliLvTGPTGSGKTTTLY~~L~~ln~~~ 286 (500)
T COG2804 257 PQGLILVTGPTGSGKTTTLYAALSELNTPE 286 (500)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcCCC
Confidence 456788999999999999999999988654
No 465
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.85 E-value=0.00097 Score=57.62 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=18.4
Q ss_pred EEEECCCCCchHHHHHHHHH
Q 014789 56 ILLLGPRGSGKIAVLELILT 75 (418)
Q Consensus 56 ill~G~~GtGKT~l~~~~~~ 75 (418)
++|+||.|+|||++++.++.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 67999999999999999883
No 466
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=96.85 E-value=0.037 Score=52.21 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=34.0
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh-HHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD-CCAFKEIARQ 108 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~-~~~~~~i~~~ 108 (418)
++.-++|+|..||||||+++-+..-.....++ +++|+...+.+ .+-|+.+.+.
T Consensus 348 rGelvFliG~NGsGKST~~~LLtGL~~PqsG~----I~ldg~pV~~e~ledYR~LfSa 401 (546)
T COG4615 348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQSGE----ILLDGKPVSAEQLEDYRKLFSA 401 (546)
T ss_pred cCcEEEEECCCCCcHHHHHHHHhcccCCCCCc----eeECCccCCCCCHHHHHHHHHH
Confidence 36678999999999999998665443333333 78888765431 2334444443
No 467
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.85 E-value=0.0025 Score=54.94 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=23.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
.+..+.|.||.|+||||+++.++..+..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 52 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRPP 52 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4667889999999999999998876543
No 468
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.84 E-value=0.0043 Score=55.58 Aligned_cols=50 Identities=18% Similarity=0.217 Sum_probs=34.7
Q ss_pred ChhhhHHHHHHHH----HHHHhc-CCCceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 32 SPDSNYSKLKFLV----SSSVTE-ACNNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 32 gr~~e~~~l~~~l----~~~~~~-~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
.|++|.+.+...| ...... +.+..+-|.||+|+||||+++.++..+....
T Consensus 7 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~ 61 (229)
T PRK09270 7 YRDEEIEAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDG 61 (229)
T ss_pred cChHhHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhcc
Confidence 3566655554444 444333 2344566999999999999999999888654
No 469
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.84 E-value=0.002 Score=56.09 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=28.5
Q ss_pred eEEEEEecchhhhhhcch-------hHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhccc
Q 014789 142 KTIIFVLDEFDLFAQGKQ-------RLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRF 199 (418)
Q Consensus 142 ~~~viilDEid~l~~~~~-------~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~ 199 (418)
...+|||||++.+.+... ..+ ..+.. .-....-+|++|.. +..+++.++...
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~-~~l~~--hRh~g~diiliTQ~---~~~id~~ir~lv 137 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEII-EFLAQ--HRHYGWDIILITQS---PSQIDKFIRDLV 137 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHH-HGGGG--CCCTT-EEEEEES----GGGB-HHHHCCE
T ss_pred CCcEEEEECChhhcCCCccccccchHHH-HHHHH--hCcCCcEEEEEeCC---HHHHhHHHHHHH
Confidence 467999999999887622 223 32222 22356788888877 445666666544
No 470
>PHA02624 large T antigen; Provisional
Probab=96.84 E-value=0.0027 Score=63.39 Aligned_cols=42 Identities=19% Similarity=0.116 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 38 SKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 38 ~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
..+...++..+++-+ .+.++|+||||||||+++.++++.+..
T Consensus 415 ~~~~~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G 457 (647)
T PHA02624 415 DVIYDILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGG 457 (647)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 445555666666644 568889999999999999999998864
No 471
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.83 E-value=0.0079 Score=51.18 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=28.8
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccc
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGL 93 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~ 93 (418)
.++..+.|.||.|+||||+++.++..+....+ .+++++.
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G----~i~~~g~ 64 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSG----EILIDGV 64 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCCCC----EEEECCE
Confidence 35778899999999999999999876653322 2455554
No 472
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=96.82 E-value=0.0021 Score=54.74 Aligned_cols=24 Identities=38% Similarity=0.775 Sum_probs=19.2
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.+.++|.||+|+|||++...+...
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~ 26 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNG 26 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHS
T ss_pred CceEEEEcCCCCCHHHHHHHHhcC
Confidence 468999999999999999988775
No 473
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.82 E-value=0.0086 Score=59.29 Aligned_cols=64 Identities=17% Similarity=0.086 Sum_probs=39.3
Q ss_pred eEEEEEecchhhhhhc-chhHHHHH-HhhhccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEec
Q 014789 142 KTIIFVLDEFDLFAQG-KQRLLYSL-LDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFL 207 (418)
Q Consensus 142 ~~~viilDEid~l~~~-~~~~L~~l-~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~ 207 (418)
.|-+||.||.=...+. .|..+.+| .++.. ...+..+++|.++++.+.+-+++.--...+.+...
T Consensus 447 ~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~--e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G 512 (539)
T COG1123 447 EPKLLILDEPVSALDVSVQAQVLNLLKDLQE--ELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512 (539)
T ss_pred CCCEEEecCCccccCHHHHHHHHHHHHHHHH--HhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeC
Confidence 6899999997554443 33333333 33322 25789999999988777766655433333445544
No 474
>PRK14529 adenylate kinase; Provisional
Probab=96.81 E-value=0.023 Score=50.35 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=22.4
Q ss_pred eEEEECCCCCchHHHHHHHHHHHhh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
.++|.||||+||||.++.+++.+.-
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 4789999999999999999988764
No 475
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.80 E-value=0.018 Score=49.77 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=20.3
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
....-|.||+||||||+++.+ +.+.+.
T Consensus 33 ~~VTAlIGPSGcGKST~LR~l-NRmndl 59 (253)
T COG1117 33 NKVTALIGPSGCGKSTLLRCL-NRMNDL 59 (253)
T ss_pred CceEEEECCCCcCHHHHHHHH-Hhhccc
Confidence 445569999999999999954 445543
No 476
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.78 E-value=0.011 Score=59.22 Aligned_cols=122 Identities=15% Similarity=0.124 Sum_probs=63.2
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh-------cccc------
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-------LLFS------ 118 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-------~~~~------ 118 (418)
++..++|+|+||||||+++.+++..-....+ -..+|+... .++.+ +.+-+.+++.... ....
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~g--e~~lyvs~e--E~~~~-l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~ 94 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFD--EPGVFVTFE--ESPQD-IIKNARSFGWDLQKLVDEGKLFILDASPDP 94 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC--CCEEEEEEe--cCHHH-HHHHHHHcCCCHHHHhhcCceEEEecCchh
Confidence 4678899999999999999998765433322 234566543 23333 3333444442210 0000
Q ss_pred ------cCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc------chhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 119 ------KMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG------KQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 119 ------~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~------~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
.........+.+...+... .+-.++||-+..+... ....++.+++.... ....++.++..
T Consensus 95 ~~~~~~~~~~l~~~l~~i~~~ls~g----~~qRVvIDSl~aL~~~~~~~~~~r~~l~~Li~~L~~--~g~TvLLtsh~ 166 (484)
T TIGR02655 95 EGQDVVGGFDLSALIERINYAIRKY----KAKRVSIDSVTAVFQQYDAVSVVRREIFRLVARLKQ--IGVTTVMTTER 166 (484)
T ss_pred ccccccccCCHHHHHHHHHHHHHHh----CCcEEEEeehhHhhhhcCchHHHHHHHHHHHHHHHH--CCCEEEEEecC
Confidence 0112334444555555443 4567899966554322 12345555554432 34455555544
No 477
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.78 E-value=0.0026 Score=56.46 Aligned_cols=27 Identities=33% Similarity=0.459 Sum_probs=23.4
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.|+.|+||||+++.++..+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 467888999999999999999887654
No 478
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=96.78 E-value=0.012 Score=64.27 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=19.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
+..++|+|++||||||.+=.++..+
T Consensus 89 ~~VviI~GeTGSGKTTqlPq~lle~ 113 (1294)
T PRK11131 89 HQVVIVAGETGSGKTTQLPKICLEL 113 (1294)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999776555543
No 479
>PRK03839 putative kinase; Provisional
Probab=96.78 E-value=0.0012 Score=56.75 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.9
Q ss_pred eEEEECCCCCchHHHHHHHHHHHh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.++|.|+||+||||+++.+++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999875
No 480
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.77 E-value=0.0014 Score=56.02 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=23.5
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
+..++|+|+||+||||+++.+.+.+..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 457899999999999999999888653
No 481
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.77 E-value=0.038 Score=50.54 Aligned_cols=180 Identities=13% Similarity=0.067 Sum_probs=92.8
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh---HHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD---CCAFKEI 105 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~---~~~~~~i 105 (418)
.++--++.++.|.+.- +.+. .+.+++++.|.+|+||+++++.++--.. ..++.+......+. +..++.+
T Consensus 9 ~lVlf~~ai~hi~ri~-RvL~-~~~Gh~LLvG~~GsGr~sl~rLaa~i~~------~~~~~i~~~~~y~~~~f~~dLk~~ 80 (268)
T PF12780_consen 9 NLVLFDEAIEHIARIS-RVLS-QPRGHALLVGVGGSGRQSLARLAAFICG------YEVFQIEITKGYSIKDFKEDLKKA 80 (268)
T ss_dssp -----HHHHHHHHHHH-HHHC-STTEEEEEECTTTSCHHHHHHHHHHHTT------EEEE-TTTSTTTHHHHHHHHHHHH
T ss_pred ceeeHHHHHHHHHHHH-HHHc-CCCCCeEEecCCCccHHHHHHHHHHHhc------cceEEEEeeCCcCHHHHHHHHHHH
Confidence 3555667777776643 4444 3567899999999999999996665432 44555554332222 2234444
Q ss_pred HHHHHHhhh---cccccC-CChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc------------chhHHHHHHhhh
Q 014789 106 ARQLCMEHQ---LLFSKM-ASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG------------KQRLLYSLLDAM 169 (418)
Q Consensus 106 ~~~l~~~~~---~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~------------~~~~L~~l~~~~ 169 (418)
+...+.+.. ..+... ...+..++.+..+|..+. -|-++-=||.|.+... ..+.++++|-..
T Consensus 81 ~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGe---ip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~r 157 (268)
T PF12780_consen 81 LQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGE---IPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIER 157 (268)
T ss_dssp HHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS----TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHH
T ss_pred HHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCC---CCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHH
Confidence 444433321 001111 112334555666665543 4455556677766543 112344444221
Q ss_pred ccCCCcEEEEEeccC--CChHH--HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 170 QSVTSQAVVIGVSCR--LDADQ--LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 170 ~~~~~~~~lI~~s~~--~~~~~--~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
...++.+|.+-++ ..+.. ..-|.+.+++ ....|.+.+.+.+..+-...+.
T Consensus 158 --vr~nLHivl~~sp~~~~~r~~~~~fPaL~~~c--tIdW~~~W~~eaL~~Va~~~l~ 211 (268)
T PF12780_consen 158 --VRKNLHIVLCMSPVGPNFRDRCRSFPALVNCC--TIDWFDPWPEEALLSVANKFLS 211 (268)
T ss_dssp --HCCCEEEEEEESTTTTCCCHHHHHHCCHHHHS--EEEEEES--HHHHHHHHHHHCC
T ss_pred --HHhheeEEEEECCCCchHHHHHHhCcchhccc--EEEeCCcCCHHHHHHHHHHHHH
Confidence 2344544444333 23333 3346666666 4677899999999999888775
No 482
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.77 E-value=0.011 Score=55.56 Aligned_cols=101 Identities=8% Similarity=0.091 Sum_probs=55.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh--hhC-CCCeEEEEEccccCCChHHHHHHHHHHHHHhhh-----cccccCCChH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL--LEY-PDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-----LLFSKMASFD 124 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~--~~~-~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~ 124 (418)
+..+.|+|+||+|||+++..++.... ... +..-.++|+++.....+.. +.++++.++.... +.+....+.+
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~~~~~l~~i~~~~~~~~~ 174 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLNPEDVLDNVAYARAYNTD 174 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCChHHhhccEEEEecCChH
Confidence 55677999999999999998876322 111 1223678888766544433 4455555432211 1111222333
Q ss_pred hHHHHHHHHHhhcCCCceEEEEEecchhhhh
Q 014789 125 DNSQFMIEMLRECGLAHKTIIFVLDEFDLFA 155 (418)
Q Consensus 125 ~~~~~l~~~l~~~~~~~~~~viilDEid~l~ 155 (418)
+....+....... ...++.+||||-+-.+.
T Consensus 175 ~~~~~l~~~~~~~-~~~~~~LvVIDSI~al~ 204 (316)
T TIGR02239 175 HQLQLLQQAAAMM-SESRFALLIVDSATALY 204 (316)
T ss_pred HHHHHHHHHHHhh-ccCCccEEEEECcHHHh
Confidence 3333332221111 12367889999887663
No 483
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.76 E-value=0.0025 Score=54.48 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=29.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcc
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNG 92 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~ 92 (418)
.+..+.|.|+||+||||+++.++..+.... ..+..+++
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g---~~v~~id~ 40 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAG---YPVEVLDG 40 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEcC
Confidence 456788999999999999999999886543 34455654
No 484
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.76 E-value=0.0033 Score=55.91 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=23.3
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
++..+.|.||.|+||||+++.++..+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 466788999999999999999987654
No 485
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.76 E-value=0.0077 Score=47.80 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 39 KLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 39 ~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
++.+.|...++ .+..++|.|+=|+|||++++.+++.+...
T Consensus 3 ~la~~l~~~l~--~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 3 RLAKKLAQILK--PGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HHHHHHHHHHS--S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred HHHHHHHHhCC--CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34455555543 45788999999999999999999998654
No 486
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.74 E-value=0.0023 Score=53.66 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=24.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
..+++|.|++|+||||+.+.+++.|.-.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~ 29 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLP 29 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCC
Confidence 3579999999999999999999998744
No 487
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.74 E-value=0.0021 Score=60.76 Aligned_cols=40 Identities=20% Similarity=0.339 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 39 KLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 39 ~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
.+..+|..++.. ..+++|+|++|+||||++++++..+...
T Consensus 148 ~~~~~L~~~v~~--~~nili~G~tgSGKTTll~aL~~~ip~~ 187 (332)
T PRK13900 148 KIKEFLEHAVIS--KKNIIISGGTSTGKTTFTNAALREIPAI 187 (332)
T ss_pred HHHHHHHHHHHc--CCcEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 456777777764 5689999999999999999999887643
No 488
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.73 E-value=0.011 Score=52.91 Aligned_cols=138 Identities=21% Similarity=0.219 Sum_probs=75.4
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccC-CChHHHHHHHHHHHHHhhhc----c---------
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLH-SDDCCAFKEIARQLCMEHQL----L--------- 116 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~-~~~~~~~~~i~~~l~~~~~~----~--------- 116 (418)
+.+..+.+.|+.|.||||+++.+.-.+....+ .+.+++... ......++.+.-.++...+. +
T Consensus 48 P~G~ivgflGaNGAGKSTtLKmLTGll~p~~G----~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~ 123 (325)
T COG4586 48 PKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG----KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLK 123 (325)
T ss_pred CCCcEEEEEcCCCCcchhhHHHHhCccccCCC----eEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHH
Confidence 44667789999999999999987766655443 478888653 33444555554444333210 0
Q ss_pred --cc-cCCChHhHHHHHHHHHhhc----------------------CCCceEEEEEecchhhhhhc-chhHHHHHHhhhc
Q 014789 117 --FS-KMASFDDNSQFMIEMLREC----------------------GLAHKTIIFVLDEFDLFAQG-KQRLLYSLLDAMQ 170 (418)
Q Consensus 117 --~~-~~~~~~~~~~~l~~~l~~~----------------------~~~~~~~viilDEid~l~~~-~~~~L~~l~~~~~ 170 (418)
+. ....+.+..+.+.+.|.-. .--++|-|++|||.--=.+- .|..+..++.+..
T Consensus 124 ~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n 203 (325)
T COG4586 124 LIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYN 203 (325)
T ss_pred HHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHH
Confidence 00 0011222222222222110 01347999999995322111 4566667766654
Q ss_pred cCCCcEEEEEeccCCChHHHHHH
Q 014789 171 SVTSQAVVIGVSCRLDADQLLEK 193 (418)
Q Consensus 171 ~~~~~~~lI~~s~~~~~~~~l~~ 193 (418)
.. ....|+.+|..++=...+-.
T Consensus 204 ~~-~~aTVllTTH~~~di~~lc~ 225 (325)
T COG4586 204 EE-RQATVLLTTHIFDDIATLCD 225 (325)
T ss_pred Hh-hCceEEEEecchhhHHHhhh
Confidence 33 46678888876543344333
No 489
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.72 E-value=0.0036 Score=55.28 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.2
Q ss_pred eEEEECCCCCchHHHHHHHHHHHh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+.|.||.|+||||+++.++..+.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCC
Confidence 788999999999999999986554
No 490
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.72 E-value=0.0029 Score=58.95 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 40 LKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 40 l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
...+|..++.. ..+++|+|++|+||||++++++..+..
T Consensus 121 ~~~~L~~~v~~--~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 121 QRDVLREAVLA--RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred HHHHHHHHHHc--CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 34566666653 468999999999999999999988765
No 491
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.71 E-value=0.014 Score=55.04 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=37.9
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhh---CCCCeEEEEEccccCCChHHHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLE---YPDTISVIKLNGLLHSDDCCAFKEIARQLC 110 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~---~~~~~~~v~in~~~~~~~~~~~~~i~~~l~ 110 (418)
+..+.|+||||+|||+++..++...... .+....++|+++...-.+. -+.++++.++
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~-rl~~~~~~~g 161 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPE-RIEQMAEALG 161 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHH-HHHHHHHHcC
Confidence 5667799999999999999998764322 1122478888876543333 3555665554
No 492
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.71 E-value=0.0098 Score=62.89 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=18.6
Q ss_pred CceEEEECCCCCchHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELIL 74 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~ 74 (418)
++.+++.|++|||||+.+-..+
T Consensus 17 ~~~vIi~a~TGSGKTT~vpl~l 38 (819)
T TIGR01970 17 HPQVVLEAPPGAGKSTAVPLAL 38 (819)
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999876644
No 493
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.71 E-value=0.0056 Score=54.67 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=31.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD 97 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~ 97 (418)
....+=|+||||.||||++..+...+... +.++-++.++.....+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~-g~~VaVlAVDPSSp~t 72 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRER-GKRVAVLAVDPSSPFT 72 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHT-T--EEEEEE-GGGGCC
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhc-CCceEEEEECCCCCCC
Confidence 34455599999999999999999998765 3457788887765444
No 494
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.70 E-value=0.018 Score=50.34 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=28.0
Q ss_pred hcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC
Q 014789 49 TEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD 97 (418)
Q Consensus 49 ~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~ 97 (418)
....|..+++.|+||+|||+++..+...+.. -.++.+|......
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~-----~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGG-----GGIVVIDADEFRQ 54 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-T-----T-SEEE-GGGGGG
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccC-----CCeEEEehHHHHH
Confidence 3445777889999999999999999888741 2236677655443
No 495
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.70 E-value=0.0013 Score=56.62 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEECCCCCchHHHHHHHHHHHh
Q 014789 56 ILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 56 ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
++|+|+|||||||+++.+++.+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999988764
No 496
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.69 E-value=0.003 Score=59.11 Aligned_cols=36 Identities=19% Similarity=0.467 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 41 KFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 41 ~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
..+|..++.. ..+++|+|++|+||||++++++..+.
T Consensus 134 ~~~L~~~v~~--~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 134 ASVIRSAIDS--RLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred HHHHHHHHHc--CCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4566666664 35799999999999999999998774
No 497
>PRK00625 shikimate kinase; Provisional
Probab=96.69 E-value=0.0016 Score=55.51 Aligned_cols=24 Identities=25% Similarity=0.211 Sum_probs=22.1
Q ss_pred eEEEECCCCCchHHHHHHHHHHHh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+++|+|.||+||||+++.+++.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998875
No 498
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.69 E-value=0.0021 Score=60.83 Aligned_cols=39 Identities=26% Similarity=0.476 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 39 KLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 39 ~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
.+..++..++.. ..+++|+||+|+||||++++++..+..
T Consensus 150 ~~~~~l~~~v~~--~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 150 DLEAFLHACVVG--RLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred HHHHHHHHHHHc--CCeEEEECCCCccHHHHHHHHHcccCC
Confidence 356677777663 568999999999999999999887654
No 499
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=96.69 E-value=0.012 Score=62.22 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=17.2
Q ss_pred CceEEEECCCCCchHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLEL 72 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~ 72 (418)
+..+++.|++|||||+.+=.
T Consensus 20 ~~~vvv~A~TGSGKTt~~pl 39 (812)
T PRK11664 20 APQVLLKAPTGAGKSTWLPL 39 (812)
T ss_pred CCCEEEEcCCCCCHHHHHHH
Confidence 45799999999999998754
No 500
>PRK05439 pantothenate kinase; Provisional
Probab=96.69 E-value=0.0063 Score=56.58 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=30.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhC-CCCeEEEEEcccc
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEY-PDTISVIKLNGLL 94 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~-~~~~~~v~in~~~ 94 (418)
+-.+.|.|+||+||||+++.+...+.... +..+.++.++++-
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 44567999999999999999988776542 2345666666544
Done!