Query 014789
Match_columns 418
No_of_seqs 279 out of 2943
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 17:51:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014789.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014789hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1u_A Cell division control p 100.0 6.3E-40 2.2E-44 317.1 28.5 371 15-410 7-385 (387)
2 2qby_A CDC6 homolog 1, cell di 100.0 9.9E-38 3.4E-42 301.6 24.8 371 14-409 7-382 (386)
3 1fnn_A CDC6P, cell division co 100.0 2.2E-36 7.5E-41 292.7 31.5 362 16-405 6-382 (389)
4 2qby_B CDC6 homolog 3, cell di 100.0 1.5E-35 5E-40 286.5 30.8 353 15-406 8-369 (384)
5 3te6_A Regulatory protein SIR3 100.0 5.6E-37 1.9E-41 283.7 12.2 266 20-297 12-314 (318)
6 1w5s_A Origin recognition comp 100.0 8.1E-34 2.8E-38 276.8 34.3 366 15-405 10-402 (412)
7 4b4t_I 26S protease regulatory 99.8 5E-20 1.7E-24 174.5 15.9 228 28-310 182-435 (437)
8 4b4t_J 26S protease regulatory 99.8 1.6E-19 5.6E-24 170.6 17.7 217 28-299 148-390 (405)
9 3pfi_A Holliday junction ATP-d 99.8 1.1E-18 3.8E-23 165.2 21.6 267 28-375 29-313 (338)
10 4b4t_M 26S protease regulatory 99.8 4E-19 1.4E-23 170.6 17.8 219 28-301 181-425 (434)
11 4b4t_H 26S protease regulatory 99.8 1.3E-18 4.4E-23 166.6 18.8 216 28-298 209-450 (467)
12 3h4m_A Proteasome-activating n 99.8 1.7E-18 5.9E-23 159.8 18.7 222 23-299 13-259 (285)
13 3uk6_A RUVB-like 2; hexameric 99.8 3.2E-19 1.1E-23 170.9 13.9 250 21-299 38-331 (368)
14 4b4t_L 26S protease subunit RP 99.8 1.2E-18 4.1E-23 167.5 16.0 218 28-300 181-424 (437)
15 2chg_A Replication factor C sm 99.8 1.2E-17 4E-22 147.9 20.4 207 28-296 17-224 (226)
16 4b4t_K 26S protease regulatory 99.8 5.3E-18 1.8E-22 162.7 19.1 216 28-298 172-414 (428)
17 3eie_A Vacuolar protein sortin 99.8 2.3E-18 7.9E-23 161.7 15.7 162 28-223 18-198 (322)
18 1ofh_A ATP-dependent HSL prote 99.8 9.1E-18 3.1E-22 156.7 18.5 233 28-300 15-301 (310)
19 1sxj_B Activator 1 37 kDa subu 99.8 5.8E-17 2E-21 152.1 22.8 274 28-370 21-296 (323)
20 1hqc_A RUVB; extended AAA-ATPa 99.8 1.3E-17 4.3E-22 156.9 16.6 268 28-374 12-297 (324)
21 3u61_B DNA polymerase accessor 99.8 3.2E-17 1.1E-21 154.1 18.8 209 28-297 26-236 (324)
22 2qp9_X Vacuolar protein sortin 99.7 3E-17 1E-21 155.9 17.5 162 28-223 51-231 (355)
23 2c9o_A RUVB-like 1; hexameric 99.7 2.8E-17 9.6E-22 161.5 17.8 132 143-298 296-437 (456)
24 3pvs_A Replication-associated 99.7 3.7E-17 1.3E-21 159.3 18.4 213 28-298 26-244 (447)
25 1in4_A RUVB, holliday junction 99.7 1.4E-16 4.7E-21 150.2 21.8 271 29-380 26-314 (334)
26 2qz4_A Paraplegin; AAA+, SPG7, 99.7 1.8E-16 6.1E-21 144.3 20.7 217 28-299 6-250 (262)
27 3syl_A Protein CBBX; photosynt 99.7 3.5E-17 1.2E-21 152.8 15.9 204 29-277 32-260 (309)
28 1njg_A DNA polymerase III subu 99.7 4.1E-17 1.4E-21 146.4 15.7 225 29-296 24-249 (250)
29 1xwi_A SKD1 protein; VPS4B, AA 99.7 1E-16 3.5E-21 150.1 18.8 163 28-223 12-193 (322)
30 2z4s_A Chromosomal replication 99.7 1.3E-16 4.3E-21 155.8 19.2 233 18-299 96-333 (440)
31 3bos_A Putative DNA replicatio 99.7 3.6E-17 1.2E-21 146.7 13.6 197 42-296 41-241 (242)
32 3cf0_A Transitional endoplasmi 99.7 4.4E-17 1.5E-21 151.4 14.4 162 28-223 15-200 (301)
33 3vfd_A Spastin; ATPase, microt 99.7 2.3E-16 8E-21 151.9 19.8 162 28-223 115-296 (389)
34 1jr3_A DNA polymerase III subu 99.7 1.1E-16 3.7E-21 153.4 17.3 229 28-300 16-246 (373)
35 1lv7_A FTSH; alpha/beta domain 99.7 3E-16 1E-20 142.4 18.7 217 28-299 12-253 (257)
36 3d8b_A Fidgetin-like protein 1 99.7 6E-16 2E-20 147.2 21.3 177 13-223 68-265 (357)
37 1sxj_D Activator 1 41 kDa subu 99.7 2.9E-16 1E-20 149.3 18.8 228 28-301 37-266 (353)
38 1d2n_A N-ethylmaleimide-sensit 99.7 7.9E-16 2.7E-20 140.9 20.7 213 28-299 33-265 (272)
39 3b9p_A CG5977-PA, isoform A; A 99.7 7.5E-16 2.6E-20 142.9 20.1 221 28-302 21-276 (297)
40 1iqp_A RFCS; clamp loader, ext 99.7 5.4E-16 1.8E-20 145.7 19.2 211 28-300 25-236 (327)
41 3hu3_A Transitional endoplasmi 99.7 9.8E-17 3.4E-21 157.8 14.4 162 28-223 204-386 (489)
42 1l8q_A Chromosomal replication 99.7 7.2E-16 2.5E-20 144.9 18.2 230 18-300 2-242 (324)
43 2chq_A Replication factor C sm 99.7 1.8E-15 6.2E-20 141.6 20.0 210 29-300 18-228 (319)
44 2zan_A Vacuolar protein sortin 99.7 6.2E-16 2.1E-20 151.1 15.4 163 28-223 134-315 (444)
45 1sxj_C Activator 1 40 kDa subu 99.7 4.5E-15 1.5E-19 140.3 20.7 284 20-368 19-305 (340)
46 1sxj_A Activator 1 95 kDa subu 99.7 5.5E-16 1.9E-20 154.6 15.0 222 28-297 39-273 (516)
47 4fcw_A Chaperone protein CLPB; 99.7 7.7E-16 2.6E-20 143.8 14.8 220 28-278 17-277 (311)
48 2ce7_A Cell division protein F 99.7 3.2E-15 1.1E-19 145.8 18.4 217 28-300 16-258 (476)
49 2r44_A Uncharacterized protein 99.6 7.1E-15 2.4E-19 138.5 19.5 240 28-301 27-300 (331)
50 2r62_A Cell division protease 99.6 6.4E-17 2.2E-21 147.9 5.2 220 28-302 11-257 (268)
51 3cf2_A TER ATPase, transitiona 99.6 7.5E-16 2.6E-20 158.3 13.2 161 29-223 205-386 (806)
52 2bjv_A PSP operon transcriptio 99.6 1.6E-15 5.4E-20 138.3 11.3 226 28-291 6-250 (265)
53 1jbk_A CLPB protein; beta barr 99.6 8.8E-16 3E-20 132.5 8.9 159 28-218 22-194 (195)
54 2qen_A Walker-type ATPase; unk 99.6 8.7E-14 3E-18 131.8 23.5 297 20-375 3-333 (350)
55 2fna_A Conserved hypothetical 99.6 1.6E-13 5.4E-18 130.3 24.7 289 28-374 13-340 (357)
56 1a5t_A Delta prime, HOLB; zinc 99.6 1.3E-14 4.5E-19 136.6 16.1 198 32-275 6-208 (334)
57 1ojl_A Transcriptional regulat 99.6 2.4E-15 8.2E-20 139.6 10.6 228 28-293 2-247 (304)
58 1um8_A ATP-dependent CLP prote 99.6 2.3E-15 7.8E-20 144.4 10.3 236 28-297 21-364 (376)
59 2dhr_A FTSH; AAA+ protein, hex 99.6 2.1E-14 7.2E-19 140.9 15.7 217 28-300 31-273 (499)
60 3cf2_A TER ATPase, transitiona 99.6 1.9E-15 6.6E-20 155.2 5.7 162 28-223 477-662 (806)
61 1ixz_A ATP-dependent metallopr 99.5 6.9E-14 2.4E-18 126.6 14.9 217 22-295 11-253 (254)
62 1iy2_A ATP-dependent metallopr 99.5 1.3E-13 4.3E-18 126.6 15.9 212 28-295 40-277 (278)
63 2x8a_A Nuclear valosin-contain 99.5 6.9E-13 2.4E-17 121.0 20.2 162 28-223 10-192 (274)
64 1sxj_E Activator 1 40 kDa subu 99.5 1.1E-13 3.8E-18 131.5 14.8 203 29-278 15-243 (354)
65 1qvr_A CLPB protein; coiled co 99.5 8.3E-14 2.8E-18 147.0 15.2 163 29-223 171-346 (854)
66 3hws_A ATP-dependent CLP prote 99.5 1.2E-13 4.3E-18 131.6 15.0 216 29-278 16-321 (363)
67 1r6b_X CLPA protein; AAA+, N-t 99.5 2E-13 6.7E-18 142.8 17.2 216 28-277 458-713 (758)
68 3pxi_A Negative regulator of g 99.5 4.7E-14 1.6E-18 147.3 11.3 205 28-277 491-722 (758)
69 1g8p_A Magnesium-chelatase 38 99.5 1.4E-13 4.7E-18 130.6 13.3 153 143-301 145-325 (350)
70 2gno_A DNA polymerase III, gam 99.5 1.7E-13 5.8E-18 126.7 13.2 145 43-222 8-152 (305)
71 1r6b_X CLPA protein; AAA+, N-t 99.5 1.3E-13 4.3E-18 144.2 13.5 229 28-299 186-434 (758)
72 3pxg_A Negative regulator of g 99.5 7.2E-14 2.5E-18 137.4 10.0 195 29-279 181-385 (468)
73 2p65_A Hypothetical protein PF 99.5 5.3E-14 1.8E-18 120.6 7.6 154 28-210 22-187 (187)
74 1qvr_A CLPB protein; coiled co 99.5 3.5E-13 1.2E-17 142.2 15.1 219 29-278 559-818 (854)
75 3m6a_A ATP-dependent protease 99.5 1.7E-13 5.9E-18 137.0 12.1 228 30-297 83-340 (543)
76 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 1E-12 3.5E-17 129.1 16.4 241 28-300 22-287 (500)
77 3n70_A Transport activator; si 99.4 9.7E-14 3.3E-18 114.3 6.9 139 29-210 2-145 (145)
78 3co5_A Putative two-component 99.4 7.3E-14 2.5E-18 114.7 4.1 137 29-210 5-143 (143)
79 3t15_A Ribulose bisphosphate c 99.4 4.1E-13 1.4E-17 123.9 5.6 140 52-223 35-199 (293)
80 1ypw_A Transitional endoplasmi 99.3 3.5E-14 1.2E-18 148.3 -6.3 161 29-223 478-662 (806)
81 1g41_A Heat shock protein HSLU 99.3 2.5E-10 8.5E-15 109.8 20.7 143 143-299 251-434 (444)
82 3pxi_A Negative regulator of g 99.3 2.3E-11 7.8E-16 127.0 13.5 153 29-223 181-339 (758)
83 3k1j_A LON protease, ATP-depen 99.2 1.4E-10 4.9E-15 117.6 16.0 141 143-297 202-374 (604)
84 1jr3_D DNA polymerase III, del 99.2 8.9E-10 3.1E-14 104.0 18.5 204 49-310 14-221 (343)
85 3f9v_A Minichromosome maintena 99.2 2.4E-12 8.2E-17 129.9 0.0 154 143-298 392-587 (595)
86 1ypw_A Transitional endoplasmi 99.2 1.2E-10 4.1E-15 121.6 12.4 162 28-223 204-386 (806)
87 1ny5_A Transcriptional regulat 99.1 1.2E-09 4.2E-14 104.6 15.7 229 28-294 137-383 (387)
88 3dzd_A Transcriptional regulat 99.1 1.8E-09 6.2E-14 102.6 16.4 215 28-279 129-361 (368)
89 1z6t_A APAF-1, apoptotic prote 99.1 9.5E-09 3.3E-13 104.2 22.4 168 28-223 124-300 (591)
90 2kjq_A DNAA-related protein; s 99.1 1.7E-10 5.9E-15 94.9 6.1 105 52-200 35-140 (149)
91 2w58_A DNAI, primosome compone 99.0 2.7E-09 9.4E-14 92.6 11.4 126 29-184 26-158 (202)
92 3ec2_A DNA replication protein 99.0 4.9E-09 1.7E-13 89.2 11.7 122 34-185 20-143 (180)
93 2a5y_B CED-4; apoptosis; HET: 98.9 5.3E-08 1.8E-12 97.7 19.3 165 31-222 131-306 (549)
94 3sfz_A APAF-1, apoptotic pepti 98.9 2.4E-07 8.1E-12 102.0 23.7 172 28-223 124-300 (1249)
95 4akg_A Glutathione S-transfera 98.7 3.4E-08 1.2E-12 113.2 12.3 163 37-223 1253-1432(2695)
96 2qgz_A Helicase loader, putati 98.5 2.4E-07 8.3E-12 85.6 7.9 37 53-92 152-189 (308)
97 3f8t_A Predicted ATPase involv 98.4 2.1E-07 7.1E-12 89.1 6.3 227 30-298 215-483 (506)
98 1vt4_I APAF-1 related killer D 98.4 4.2E-06 1.4E-10 87.6 16.3 171 29-223 129-312 (1221)
99 1tue_A Replication protein E1; 98.4 2.3E-07 7.7E-12 79.1 4.2 38 41-78 45-83 (212)
100 4akg_A Glutathione S-transfera 98.3 2.4E-05 8E-10 90.3 20.8 144 37-222 631-793 (2695)
101 3vkg_A Dynein heavy chain, cyt 98.3 2.9E-06 9.9E-11 98.3 12.4 160 39-222 1292-1469(3245)
102 2r2a_A Uncharacterized protein 98.3 9.7E-07 3.3E-11 75.9 5.8 60 142-208 87-152 (199)
103 1u0j_A DNA replication protein 98.1 8.8E-06 3E-10 72.6 8.6 40 38-77 87-128 (267)
104 3upu_A ATP-dependent DNA helic 98.1 2.2E-05 7.5E-10 76.8 12.2 60 19-81 13-73 (459)
105 2b8t_A Thymidine kinase; deoxy 98.0 2.9E-06 9.9E-11 74.1 4.3 93 52-156 11-103 (223)
106 2vhj_A Ntpase P4, P4; non- hyd 98.0 1.5E-05 5E-10 73.0 8.4 24 53-76 123-146 (331)
107 2iut_A DNA translocase FTSK; n 98.0 0.00035 1.2E-08 69.0 17.8 163 53-219 214-420 (574)
108 1ye8_A Protein THEP1, hypothet 97.9 2.7E-05 9.4E-10 65.6 8.0 74 142-222 99-176 (178)
109 2orw_A Thymidine kinase; TMTK, 97.9 2.3E-05 7.9E-10 66.5 7.4 28 53-80 3-30 (184)
110 3vkg_A Dynein heavy chain, cyt 97.9 0.00073 2.5E-08 78.8 20.6 143 38-222 591-753 (3245)
111 3hr8_A Protein RECA; alpha and 97.8 9.4E-05 3.2E-09 69.2 10.9 92 53-156 61-153 (356)
112 2cvh_A DNA repair and recombin 97.8 0.00019 6.5E-09 62.4 12.2 96 52-156 19-119 (220)
113 2w0m_A SSO2452; RECA, SSPF, un 97.8 0.0001 3.5E-09 64.6 10.1 122 52-185 22-168 (235)
114 3e1s_A Exodeoxyribonuclease V, 97.8 8.1E-05 2.8E-09 74.6 10.3 109 53-184 204-317 (574)
115 2zr9_A Protein RECA, recombina 97.8 0.00011 3.6E-09 69.0 9.9 92 52-155 60-152 (349)
116 2ius_A DNA translocase FTSK; n 97.7 0.0013 4.6E-08 64.3 17.3 75 142-220 297-375 (512)
117 3cmu_A Protein RECA, recombina 97.7 0.00013 4.4E-09 81.7 10.9 93 52-156 1426-1519(2050)
118 1n0w_A DNA repair protein RAD5 97.7 0.00038 1.3E-08 61.4 12.1 100 52-156 23-133 (243)
119 2ehv_A Hypothetical protein PH 97.7 0.00016 5.3E-09 64.3 9.4 123 52-186 29-183 (251)
120 2z43_A DNA repair and recombin 97.6 0.00023 8E-09 66.0 10.3 101 52-156 106-217 (324)
121 3io5_A Recombination and repai 97.6 0.00041 1.4E-08 63.2 11.3 94 55-156 30-125 (333)
122 1g5t_A COB(I)alamin adenosyltr 97.6 0.00033 1.1E-08 59.4 10.0 134 52-191 27-168 (196)
123 2dr3_A UPF0273 protein PH0284; 97.6 0.00026 8.9E-09 62.6 9.8 121 52-184 22-172 (247)
124 1xp8_A RECA protein, recombina 97.6 0.00034 1.2E-08 65.8 10.8 93 52-156 73-166 (366)
125 1u94_A RECA protein, recombina 97.6 0.00034 1.2E-08 65.6 10.3 93 52-156 62-155 (356)
126 3kl4_A SRP54, signal recogniti 97.5 0.0036 1.2E-07 60.0 16.8 49 33-81 68-125 (433)
127 1w36_D RECD, exodeoxyribonucle 97.4 0.00058 2E-08 69.0 11.0 27 53-79 164-190 (608)
128 1v5w_A DMC1, meiotic recombina 97.4 0.00071 2.4E-08 63.3 10.6 101 53-156 122-233 (343)
129 3lda_A DNA repair protein RAD5 97.4 0.00079 2.7E-08 64.1 11.0 100 52-156 177-287 (400)
130 4a74_A DNA repair and recombin 97.4 0.00076 2.6E-08 58.9 10.1 131 52-185 24-180 (231)
131 2i1q_A DNA repair and recombin 97.4 0.0013 4.4E-08 60.9 12.0 101 52-156 97-218 (322)
132 2r8r_A Sensor protein; KDPD, P 97.4 0.00082 2.8E-08 58.2 9.3 42 53-97 6-47 (228)
133 3dm5_A SRP54, signal recogniti 97.3 0.0052 1.8E-07 59.0 15.5 61 33-96 72-140 (443)
134 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 0.002 6.8E-08 57.6 12.0 28 53-80 4-31 (260)
135 1w4r_A Thymidine kinase; type 97.3 0.00041 1.4E-08 58.6 6.2 108 52-183 19-127 (195)
136 2i3b_A HCR-ntpase, human cance 97.3 0.00053 1.8E-08 58.2 7.0 25 54-78 2-26 (189)
137 2p5t_B PEZT; postsegregational 97.2 0.0032 1.1E-07 56.1 12.1 26 53-78 32-57 (253)
138 3llm_A ATP-dependent RNA helic 97.2 0.0036 1.2E-07 55.0 12.0 24 53-76 76-99 (235)
139 2j9r_A Thymidine kinase; TK1, 97.2 0.0014 4.7E-08 56.4 8.7 89 53-157 28-116 (214)
140 3cmu_A Protein RECA, recombina 97.2 0.0011 3.9E-08 74.3 10.2 93 52-156 1080-1173(2050)
141 1vec_A ATP-dependent RNA helic 97.2 0.0025 8.6E-08 54.5 10.5 32 33-71 27-58 (206)
142 3bh0_A DNAB-like replicative h 97.2 0.003 1E-07 58.2 11.6 39 52-93 67-105 (315)
143 2r6a_A DNAB helicase, replicat 97.1 0.002 6.7E-08 62.7 10.5 39 52-92 202-240 (454)
144 3dkp_A Probable ATP-dependent 97.1 0.011 3.7E-07 52.1 14.3 39 53-91 66-105 (245)
145 1gvn_B Zeta; postsegregational 97.1 0.00034 1.2E-08 63.7 4.3 26 53-78 33-58 (287)
146 1xx6_A Thymidine kinase; NESG, 97.1 0.00045 1.5E-08 58.7 4.6 29 53-81 8-36 (191)
147 3jvv_A Twitching mobility prot 97.1 0.0034 1.2E-07 58.8 10.9 29 52-80 122-150 (356)
148 1pzn_A RAD51, DNA repair and r 97.1 0.003 1E-07 59.1 10.5 104 52-156 130-245 (349)
149 2fz4_A DNA repair protein RAD2 97.0 0.0056 1.9E-07 53.9 11.5 40 31-77 93-132 (237)
150 1sky_E F1-ATPase, F1-ATP synth 97.0 0.0035 1.2E-07 60.4 10.8 102 49-157 147-260 (473)
151 4a1f_A DNAB helicase, replicat 97.0 0.0086 2.9E-07 55.5 13.0 50 52-106 45-94 (338)
152 3cmw_A Protein RECA, recombina 97.0 0.0022 7.7E-08 71.1 10.4 92 52-155 731-823 (1706)
153 3gfo_A Cobalt import ATP-bindi 97.0 0.0003 1E-08 63.5 3.1 27 52-78 33-59 (275)
154 4gp7_A Metallophosphoesterase; 97.0 0.0023 7.7E-08 53.3 8.3 21 52-72 8-28 (171)
155 2q6t_A DNAB replication FORK h 97.0 0.0064 2.2E-07 58.9 12.6 39 52-92 199-237 (444)
156 1qhx_A CPT, protein (chloramph 97.0 0.0004 1.4E-08 58.2 3.6 26 53-78 3-28 (178)
157 1cr0_A DNA primase/helicase; R 97.0 0.0062 2.1E-07 55.5 11.7 39 52-92 34-72 (296)
158 3bor_A Human initiation factor 97.0 0.0038 1.3E-07 54.9 9.9 41 142-185 173-214 (237)
159 1qde_A EIF4A, translation init 97.0 0.0053 1.8E-07 53.3 10.8 26 53-78 51-77 (224)
160 2ga8_A Hypothetical 39.9 kDa p 96.9 0.0012 4E-08 61.4 6.4 48 33-80 4-51 (359)
161 2zts_A Putative uncharacterize 96.9 0.0063 2.2E-07 53.6 11.1 26 52-77 29-54 (251)
162 3uie_A Adenylyl-sulfate kinase 96.9 0.001 3.5E-08 57.0 5.6 31 49-79 21-51 (200)
163 3trf_A Shikimate kinase, SK; a 96.9 0.00065 2.2E-08 57.2 4.0 26 53-78 5-30 (185)
164 2oxc_A Probable ATP-dependent 96.9 0.06 2E-06 46.8 16.9 26 53-78 61-87 (230)
165 3ice_A Transcription terminati 96.9 0.0084 2.9E-07 56.1 11.6 106 42-156 163-275 (422)
166 4eun_A Thermoresistant glucoki 96.9 0.00074 2.5E-08 57.8 4.2 30 48-77 24-53 (200)
167 3vaa_A Shikimate kinase, SK; s 96.9 0.00076 2.6E-08 57.7 4.2 27 52-78 24-50 (199)
168 1rz3_A Hypothetical protein rb 96.9 0.0016 5.6E-08 55.7 6.3 48 32-80 2-49 (201)
169 3zvl_A Bifunctional polynucleo 96.9 0.0032 1.1E-07 60.4 9.0 26 52-77 257-282 (416)
170 3cmw_A Protein RECA, recombina 96.8 0.0036 1.2E-07 69.5 10.3 93 53-157 1431-1524(1706)
171 2xau_A PRE-mRNA-splicing facto 96.8 0.0056 1.9E-07 63.5 11.3 24 53-76 109-132 (773)
172 3ber_A Probable ATP-dependent 96.8 0.01 3.6E-07 52.5 11.6 26 53-78 80-106 (249)
173 3kb2_A SPBC2 prophage-derived 96.8 0.00071 2.4E-08 56.1 3.5 24 55-78 3-26 (173)
174 1nks_A Adenylate kinase; therm 96.8 0.001 3.4E-08 56.3 4.5 26 55-80 3-28 (194)
175 2gxq_A Heat resistant RNA depe 96.8 0.0094 3.2E-07 50.8 10.8 25 53-77 38-63 (207)
176 3c8u_A Fructokinase; YP_612366 96.8 0.0016 5.4E-08 56.1 5.8 44 51-95 20-63 (208)
177 2yvu_A Probable adenylyl-sulfa 96.8 0.0011 3.6E-08 56.1 4.6 31 51-81 11-41 (186)
178 1ex7_A Guanylate kinase; subst 96.8 0.00073 2.5E-08 57.1 3.5 26 54-79 2-27 (186)
179 1kag_A SKI, shikimate kinase I 96.8 0.00085 2.9E-08 55.8 3.6 26 53-78 4-29 (173)
180 1vma_A Cell division protein F 96.7 0.0028 9.5E-08 58.1 7.3 29 53-81 104-132 (306)
181 1kht_A Adenylate kinase; phosp 96.7 0.001 3.5E-08 56.2 4.2 28 53-80 3-30 (192)
182 3iij_A Coilin-interacting nucl 96.7 0.001 3.4E-08 55.8 3.9 27 52-78 10-36 (180)
183 2orv_A Thymidine kinase; TP4A 96.7 0.0057 1.9E-07 53.0 8.6 110 53-187 19-128 (234)
184 3bgw_A DNAB-like replicative h 96.7 0.0083 2.9E-07 58.0 10.5 40 52-94 196-235 (444)
185 3ly5_A ATP-dependent RNA helic 96.7 0.068 2.3E-06 47.6 15.8 19 54-72 92-110 (262)
186 4g1u_C Hemin import ATP-bindin 96.7 0.003 1E-07 56.7 6.8 27 52-78 36-62 (266)
187 2rhm_A Putative kinase; P-loop 96.7 0.0011 3.8E-08 56.1 3.8 26 53-78 5-30 (193)
188 1zuh_A Shikimate kinase; alpha 96.7 0.0012 4.1E-08 54.6 3.9 27 52-78 6-32 (168)
189 2z0h_A DTMP kinase, thymidylat 96.6 0.0029 9.9E-08 53.7 6.3 26 55-80 2-27 (197)
190 1aky_A Adenylate kinase; ATP:A 96.6 0.0013 4.3E-08 57.3 4.0 27 52-78 3-29 (220)
191 1ly1_A Polynucleotide kinase; 96.6 0.0011 3.7E-08 55.4 3.5 22 54-75 3-24 (181)
192 1j8m_F SRP54, signal recogniti 96.6 0.054 1.8E-06 49.2 15.1 59 35-96 71-138 (297)
193 4b3f_X DNA-binding protein smu 96.6 0.0033 1.1E-07 64.1 7.7 42 34-81 192-233 (646)
194 3iuy_A Probable ATP-dependent 96.6 0.028 9.7E-07 48.7 12.8 19 53-71 57-75 (228)
195 2pbr_A DTMP kinase, thymidylat 96.6 0.0032 1.1E-07 53.2 6.4 26 55-80 2-27 (195)
196 2px0_A Flagellar biosynthesis 96.6 0.013 4.4E-07 53.4 10.8 41 52-94 104-144 (296)
197 1via_A Shikimate kinase; struc 96.6 0.0012 4.2E-08 55.1 3.6 24 55-78 6-29 (175)
198 2iyv_A Shikimate kinase, SK; t 96.6 0.0013 4.4E-08 55.4 3.7 25 54-78 3-27 (184)
199 1y63_A LMAJ004144AAA protein; 96.6 0.0014 4.8E-08 55.3 4.0 25 52-76 9-33 (184)
200 1q0u_A Bstdead; DEAD protein, 96.6 0.014 4.9E-07 50.3 10.5 39 33-78 28-67 (219)
201 2pez_A Bifunctional 3'-phospho 96.6 0.002 7E-08 53.9 4.8 38 52-92 4-41 (179)
202 1t6n_A Probable ATP-dependent 96.6 0.059 2E-06 46.3 14.4 23 54-76 52-74 (220)
203 3tui_C Methionine import ATP-b 96.6 0.0027 9.4E-08 59.3 5.9 26 52-77 53-78 (366)
204 3cm0_A Adenylate kinase; ATP-b 96.6 0.0013 4.5E-08 55.3 3.5 26 53-78 4-29 (186)
205 2cdn_A Adenylate kinase; phosp 96.5 0.0018 6.1E-08 55.4 4.3 26 53-78 20-45 (201)
206 3fe2_A Probable ATP-dependent 96.5 0.08 2.7E-06 46.4 15.3 26 53-78 66-92 (242)
207 2c95_A Adenylate kinase 1; tra 96.5 0.0015 5.1E-08 55.4 3.8 27 52-78 8-34 (196)
208 1knq_A Gluconate kinase; ALFA/ 96.5 0.0016 5.6E-08 54.2 3.9 26 52-77 7-32 (175)
209 2qor_A Guanylate kinase; phosp 96.5 0.0015 5.1E-08 56.1 3.7 27 52-78 11-37 (204)
210 3lw7_A Adenylate kinase relate 96.5 0.0014 4.7E-08 54.4 3.4 22 55-77 3-24 (179)
211 1zp6_A Hypothetical protein AT 96.5 0.0013 4.5E-08 55.6 3.3 25 52-76 8-32 (191)
212 1m7g_A Adenylylsulfate kinase; 96.5 0.0032 1.1E-07 54.3 5.7 39 50-91 22-61 (211)
213 1nn5_A Similar to deoxythymidy 96.5 0.0025 8.5E-08 54.9 5.0 30 52-81 8-37 (215)
214 3umf_A Adenylate kinase; rossm 96.5 0.0017 5.9E-08 56.2 3.9 27 52-78 28-54 (217)
215 1kgd_A CASK, peripheral plasma 96.5 0.0017 5.8E-08 54.5 3.8 26 53-78 5-30 (180)
216 2j37_W Signal recognition part 96.5 0.033 1.1E-06 54.5 13.4 45 36-80 75-128 (504)
217 3b6e_A Interferon-induced heli 96.5 0.024 8.1E-07 48.5 11.2 41 30-77 32-72 (216)
218 3t61_A Gluconokinase; PSI-biol 96.5 0.0017 5.9E-08 55.5 3.7 26 53-78 18-43 (202)
219 2plr_A DTMP kinase, probable t 96.5 0.0019 6.5E-08 55.5 4.0 28 53-80 4-31 (213)
220 1tev_A UMP-CMP kinase; ploop, 96.5 0.0017 6E-08 54.9 3.7 26 53-78 3-28 (196)
221 3tau_A Guanylate kinase, GMP k 96.5 0.0016 5.4E-08 56.1 3.4 27 52-78 7-33 (208)
222 2bwj_A Adenylate kinase 5; pho 96.4 0.0018 6.2E-08 55.0 3.7 26 53-78 12-37 (199)
223 2xxa_A Signal recognition part 96.4 0.072 2.5E-06 51.1 15.2 42 53-96 100-141 (433)
224 3tlx_A Adenylate kinase 2; str 96.4 0.0051 1.7E-07 54.3 6.7 28 51-78 27-54 (243)
225 3fb4_A Adenylate kinase; psych 96.4 0.0018 6.2E-08 56.0 3.6 24 55-78 2-25 (216)
226 1e6c_A Shikimate kinase; phosp 96.4 0.0021 7.2E-08 53.3 3.9 25 54-78 3-27 (173)
227 1kao_A RAP2A; GTP-binding prot 96.4 0.071 2.4E-06 43.0 13.3 23 54-76 4-26 (167)
228 1q57_A DNA primase/helicase; d 96.4 0.015 5.2E-07 57.2 10.6 38 53-92 242-279 (503)
229 2va8_A SSO2462, SKI2-type heli 96.4 0.039 1.3E-06 56.8 14.2 36 53-91 46-82 (715)
230 3eiq_A Eukaryotic initiation f 96.4 0.036 1.2E-06 52.7 13.0 26 53-78 77-103 (414)
231 1zak_A Adenylate kinase; ATP:A 96.4 0.0018 6.3E-08 56.3 3.6 27 52-78 4-30 (222)
232 2vli_A Antibiotic resistance p 96.4 0.0014 4.9E-08 54.9 2.7 26 53-78 5-30 (183)
233 1tf7_A KAIC; homohexamer, hexa 96.4 0.037 1.3E-06 54.8 13.3 122 52-185 280-417 (525)
234 3dl0_A Adenylate kinase; phosp 96.4 0.0017 5.9E-08 56.1 3.3 23 55-77 2-24 (216)
235 2wwf_A Thymidilate kinase, put 96.4 0.0023 7.8E-08 55.1 4.0 30 52-81 9-38 (212)
236 3fmo_B ATP-dependent RNA helic 96.3 0.026 8.8E-07 51.5 11.0 30 49-78 127-157 (300)
237 1wrb_A DJVLGB; RNA helicase, D 96.3 0.15 5E-06 44.9 15.8 25 53-77 60-85 (253)
238 1qf9_A UMP/CMP kinase, protein 96.3 0.0021 7.2E-08 54.3 3.3 26 53-78 6-31 (194)
239 2pt5_A Shikimate kinase, SK; a 96.3 0.0026 9E-08 52.5 3.8 24 55-78 2-25 (168)
240 1ak2_A Adenylate kinase isoenz 96.3 0.003 1E-07 55.5 4.3 27 52-78 15-41 (233)
241 3lfu_A DNA helicase II; SF1 he 96.3 0.018 6.2E-07 58.5 10.8 27 52-78 21-47 (647)
242 3sr0_A Adenylate kinase; phosp 96.3 0.0024 8.2E-08 54.9 3.6 24 55-78 2-25 (206)
243 1ukz_A Uridylate kinase; trans 96.3 0.0024 8.1E-08 54.6 3.6 26 53-78 15-40 (203)
244 1fuu_A Yeast initiation factor 96.3 0.042 1.4E-06 51.8 12.7 25 54-78 59-84 (394)
245 1zd8_A GTP:AMP phosphotransfer 96.3 0.0021 7.3E-08 56.1 3.3 26 53-78 7-32 (227)
246 1xjc_A MOBB protein homolog; s 96.3 0.0053 1.8E-07 50.8 5.4 29 53-81 4-32 (169)
247 1hv8_A Putative ATP-dependent 96.3 0.021 7.3E-07 53.1 10.4 39 33-77 30-68 (367)
248 2zj8_A DNA helicase, putative 96.3 0.049 1.7E-06 56.1 14.0 122 53-185 39-179 (720)
249 2ze6_A Isopentenyl transferase 96.3 0.0023 8E-08 57.0 3.5 24 55-78 3-26 (253)
250 3be4_A Adenylate kinase; malar 96.3 0.0025 8.7E-08 55.2 3.6 26 53-78 5-30 (217)
251 3tr0_A Guanylate kinase, GMP k 96.3 0.0029 1E-07 54.1 3.9 26 52-77 6-31 (205)
252 3ney_A 55 kDa erythrocyte memb 96.2 0.003 1E-07 53.7 3.9 27 52-78 18-44 (197)
253 2v6i_A RNA helicase; membrane, 96.2 0.012 4.2E-07 56.7 8.7 27 53-79 2-29 (431)
254 3a00_A Guanylate kinase, GMP k 96.2 0.0026 8.8E-08 53.7 3.5 26 54-79 2-27 (186)
255 3pey_A ATP-dependent RNA helic 96.2 0.033 1.1E-06 52.4 11.6 23 52-74 43-65 (395)
256 2jaq_A Deoxyguanosine kinase; 96.2 0.0027 9.3E-08 54.1 3.6 24 55-78 2-25 (205)
257 2bbw_A Adenylate kinase 4, AK4 96.2 0.0031 1.1E-07 55.8 4.1 27 52-78 26-52 (246)
258 3fht_A ATP-dependent RNA helic 96.2 0.019 6.7E-07 54.5 10.0 27 52-78 63-90 (412)
259 2pl3_A Probable ATP-dependent 96.2 0.073 2.5E-06 46.3 12.8 20 53-72 62-81 (236)
260 2j41_A Guanylate kinase; GMP, 96.2 0.0034 1.2E-07 53.7 4.0 26 52-77 5-30 (207)
261 1s2m_A Putative ATP-dependent 96.2 0.04 1.4E-06 52.1 11.9 21 54-74 59-79 (400)
262 1lvg_A Guanylate kinase, GMP k 96.2 0.0032 1.1E-07 53.8 3.7 26 53-78 4-29 (198)
263 1tf7_A KAIC; homohexamer, hexa 96.2 0.0091 3.1E-07 59.1 7.5 124 52-187 38-187 (525)
264 2p6r_A Afuhel308 helicase; pro 96.1 0.021 7.2E-07 58.7 10.4 35 53-91 40-75 (702)
265 2v54_A DTMP kinase, thymidylat 96.1 0.0031 1E-07 53.9 3.4 25 53-77 4-28 (204)
266 2j0s_A ATP-dependent RNA helic 96.1 0.055 1.9E-06 51.4 12.6 22 53-74 74-95 (410)
267 1u8z_A RAS-related protein RAL 96.1 0.027 9.3E-07 45.7 9.1 23 54-76 5-27 (168)
268 1odf_A YGR205W, hypothetical 3 96.1 0.0076 2.6E-07 54.7 6.0 46 35-80 11-58 (290)
269 3e2i_A Thymidine kinase; Zn-bi 96.1 0.0033 1.1E-07 53.9 3.3 29 52-80 27-55 (219)
270 2ffh_A Protein (FFH); SRP54, s 96.1 0.1 3.6E-06 49.8 14.1 56 34-92 72-134 (425)
271 1e4v_A Adenylate kinase; trans 96.1 0.0033 1.1E-07 54.3 3.5 24 55-78 2-25 (214)
272 3b9q_A Chloroplast SRP recepto 96.1 0.034 1.2E-06 50.7 10.3 48 34-81 70-128 (302)
273 2v3c_C SRP54, signal recogniti 96.0 0.021 7.2E-07 54.8 9.2 40 53-95 99-138 (432)
274 2xb4_A Adenylate kinase; ATP-b 96.0 0.0041 1.4E-07 54.1 3.8 24 55-78 2-25 (223)
275 1cke_A CK, MSSA, protein (cyti 96.0 0.0045 1.5E-07 53.8 4.0 25 54-78 6-30 (227)
276 1s96_A Guanylate kinase, GMP k 96.0 0.0041 1.4E-07 54.0 3.7 27 52-78 15-41 (219)
277 2ce2_X GTPase HRAS; signaling 96.0 0.028 9.7E-07 45.4 8.7 22 55-76 5-26 (166)
278 2bdt_A BH3686; alpha-beta prot 96.0 0.0034 1.2E-07 53.0 3.0 21 55-75 4-24 (189)
279 3asz_A Uridine kinase; cytidin 96.0 0.0045 1.5E-07 53.2 3.8 28 51-78 4-31 (211)
280 3vkw_A Replicase large subunit 96.0 0.018 6E-07 55.1 8.0 111 53-186 161-273 (446)
281 2a9k_A RAS-related protein RAL 95.9 0.038 1.3E-06 45.8 9.4 24 53-76 18-41 (187)
282 2z83_A Helicase/nucleoside tri 95.9 0.02 6.8E-07 55.7 8.6 27 53-79 21-48 (459)
283 4eaq_A DTMP kinase, thymidylat 95.9 0.0099 3.4E-07 52.0 5.8 28 52-79 25-52 (229)
284 1c1y_A RAS-related protein RAP 95.9 0.034 1.1E-06 45.2 8.8 22 55-76 5-26 (167)
285 3fho_A ATP-dependent RNA helic 95.9 0.059 2E-06 53.0 12.1 39 52-91 157-196 (508)
286 2hf9_A Probable hydrogenase ni 95.9 0.01 3.5E-07 51.4 5.9 39 42-80 27-65 (226)
287 2gk6_A Regulator of nonsense t 95.9 0.011 3.8E-07 59.9 6.8 40 33-79 182-221 (624)
288 1ls1_A Signal recognition part 95.9 0.028 9.6E-07 51.1 8.9 29 53-81 98-126 (295)
289 3crm_A TRNA delta(2)-isopenten 95.9 0.0071 2.4E-07 55.5 4.9 25 54-78 6-30 (323)
290 3fmp_B ATP-dependent RNA helic 95.9 0.029 9.9E-07 54.7 9.6 27 51-77 129-156 (479)
291 2wsm_A Hydrogenase expression/ 95.9 0.0093 3.2E-07 51.5 5.4 43 33-79 14-56 (221)
292 2bov_A RAla, RAS-related prote 95.9 0.044 1.5E-06 46.4 9.6 24 53-76 14-37 (206)
293 3nwj_A ATSK2; P loop, shikimat 95.8 0.0058 2E-07 54.2 3.9 26 53-78 48-73 (250)
294 2eyu_A Twitching motility prot 95.8 0.0084 2.9E-07 53.5 5.0 30 51-80 23-52 (261)
295 1svm_A Large T antigen; AAA+ f 95.8 0.011 3.8E-07 55.6 6.0 27 51-77 167-193 (377)
296 3i5x_A ATP-dependent RNA helic 95.8 0.097 3.3E-06 52.1 13.3 20 52-71 110-129 (563)
297 3tqc_A Pantothenate kinase; bi 95.8 0.025 8.5E-07 52.0 8.1 41 54-94 93-134 (321)
298 1r8s_A ADP-ribosylation factor 95.8 0.046 1.6E-06 44.3 9.1 22 55-76 2-23 (164)
299 3r20_A Cytidylate kinase; stru 95.8 0.0068 2.3E-07 53.0 4.1 26 53-78 9-34 (233)
300 2jlq_A Serine protease subunit 95.8 0.024 8.1E-07 55.0 8.4 27 53-79 19-46 (451)
301 1np6_A Molybdopterin-guanine d 95.8 0.01 3.5E-07 49.4 5.0 38 53-91 6-43 (174)
302 1rj9_A FTSY, signal recognitio 95.8 0.012 4.1E-07 53.8 5.8 30 52-81 101-130 (304)
303 1sq5_A Pantothenate kinase; P- 95.8 0.02 6.9E-07 52.4 7.4 45 51-95 78-123 (308)
304 1p9r_A General secretion pathw 95.8 0.0089 3.1E-07 57.2 5.1 30 51-80 165-194 (418)
305 1htw_A HI0065; nucleotide-bind 95.7 0.007 2.4E-07 49.5 3.8 27 51-77 31-57 (158)
306 4edh_A DTMP kinase, thymidylat 95.7 0.018 6.2E-07 49.6 6.6 29 53-81 6-34 (213)
307 4e22_A Cytidylate kinase; P-lo 95.7 0.0069 2.4E-07 53.8 4.0 27 52-78 26-52 (252)
308 3lxw_A GTPase IMAP family memb 95.7 0.061 2.1E-06 47.4 10.2 24 53-76 21-44 (247)
309 3v9p_A DTMP kinase, thymidylat 95.7 0.019 6.5E-07 50.0 6.6 29 52-80 24-52 (227)
310 1uj2_A Uridine-cytidine kinase 95.7 0.0066 2.2E-07 53.9 3.7 29 52-80 21-49 (252)
311 1z6g_A Guanylate kinase; struc 95.7 0.0066 2.3E-07 52.6 3.6 26 52-77 22-47 (218)
312 4dsu_A GTPase KRAS, isoform 2B 95.7 0.033 1.1E-06 46.3 7.9 23 54-76 5-27 (189)
313 3t1o_A Gliding protein MGLA; G 95.7 0.039 1.3E-06 46.2 8.4 25 54-78 15-39 (198)
314 1znw_A Guanylate kinase, GMP k 95.7 0.0073 2.5E-07 51.8 3.8 27 52-78 19-45 (207)
315 3ld9_A DTMP kinase, thymidylat 95.7 0.016 5.4E-07 50.3 5.8 34 48-81 16-50 (223)
316 3e70_C DPA, signal recognition 95.7 0.021 7.3E-07 52.7 7.1 30 52-81 128-157 (328)
317 2og2_A Putative signal recogni 95.6 0.034 1.2E-06 51.9 8.5 48 34-81 127-185 (359)
318 1gtv_A TMK, thymidylate kinase 95.6 0.0039 1.3E-07 53.6 2.0 26 55-80 2-27 (214)
319 2ged_A SR-beta, signal recogni 95.6 0.011 3.7E-07 49.7 4.7 24 53-76 48-71 (193)
320 3ake_A Cytidylate kinase; CMP 95.6 0.0086 3E-07 51.1 4.0 24 55-78 4-27 (208)
321 2eyq_A TRCF, transcription-rep 95.6 0.27 9.1E-06 53.4 16.3 41 33-74 605-645 (1151)
322 2if2_A Dephospho-COA kinase; a 95.6 0.0068 2.3E-07 51.8 3.2 22 55-77 3-24 (204)
323 3kkq_A RAS-related protein M-R 95.6 0.081 2.8E-06 43.7 9.9 24 53-76 18-41 (183)
324 3foz_A TRNA delta(2)-isopenten 95.6 0.012 4.2E-07 53.4 4.9 26 53-78 10-35 (316)
325 1uf9_A TT1252 protein; P-loop, 95.6 0.0076 2.6E-07 51.3 3.5 25 52-76 7-31 (203)
326 2p5s_A RAS and EF-hand domain 95.5 0.061 2.1E-06 45.4 9.2 25 52-76 27-51 (199)
327 2wjy_A Regulator of nonsense t 95.5 0.021 7.3E-07 59.3 7.3 40 33-79 358-397 (800)
328 2v1x_A ATP-dependent DNA helic 95.5 0.034 1.2E-06 55.9 8.6 65 309-374 441-510 (591)
329 1jjv_A Dephospho-COA kinase; P 95.5 0.0068 2.3E-07 51.9 2.9 21 55-75 4-24 (206)
330 3sqw_A ATP-dependent RNA helic 95.5 0.16 5.3E-06 50.9 13.3 34 33-71 45-78 (579)
331 2il1_A RAB12; G-protein, GDP, 95.5 0.055 1.9E-06 45.4 8.6 23 54-76 27-49 (192)
332 1z0f_A RAB14, member RAS oncog 95.4 0.046 1.6E-06 44.9 8.0 24 53-76 15-38 (179)
333 4a4z_A Antiviral helicase SKI2 95.4 0.068 2.3E-06 57.1 10.9 49 33-91 41-89 (997)
334 1f6v_A DNA transposition prote 95.4 0.012 4E-07 42.2 3.4 83 197-303 2-84 (91)
335 2v9p_A Replication protein E1; 95.4 0.011 3.8E-07 53.9 4.2 27 51-77 124-150 (305)
336 2yhs_A FTSY, cell division pro 95.4 0.042 1.4E-06 53.3 8.4 29 53-81 293-321 (503)
337 3aez_A Pantothenate kinase; tr 95.4 0.022 7.7E-07 52.2 6.2 29 51-79 88-116 (312)
338 2qt1_A Nicotinamide riboside k 95.3 0.008 2.7E-07 51.5 2.9 25 53-77 21-45 (207)
339 2grj_A Dephospho-COA kinase; T 95.3 0.011 3.7E-07 50.2 3.6 25 53-77 12-36 (192)
340 3dz8_A RAS-related protein RAB 95.3 0.22 7.4E-06 41.5 11.9 24 54-77 24-47 (191)
341 3a8t_A Adenylate isopentenyltr 95.3 0.0069 2.4E-07 55.8 2.5 26 53-78 40-65 (339)
342 1ltq_A Polynucleotide kinase; 95.3 0.01 3.4E-07 54.1 3.5 23 54-76 3-25 (301)
343 1xti_A Probable ATP-dependent 95.3 0.2 6.9E-06 47.0 12.8 22 53-74 45-66 (391)
344 1a7j_A Phosphoribulokinase; tr 95.3 0.011 3.9E-07 53.6 3.8 28 53-80 5-32 (290)
345 2ewv_A Twitching motility prot 95.3 0.012 4E-07 55.5 4.0 30 51-80 134-163 (372)
346 3lnc_A Guanylate kinase, GMP k 95.2 0.0076 2.6E-07 52.7 2.5 26 52-77 26-52 (231)
347 3exa_A TRNA delta(2)-isopenten 95.2 0.0097 3.3E-07 54.2 3.1 26 53-78 3-28 (322)
348 3l9o_A ATP-dependent RNA helic 95.2 0.097 3.3E-06 56.5 11.3 98 52-157 198-305 (1108)
349 2z0m_A 337AA long hypothetical 95.2 0.19 6.6E-06 45.9 12.1 36 33-75 18-53 (337)
350 2fwr_A DNA repair protein RAD2 95.2 0.092 3.1E-06 51.0 10.3 39 32-77 94-132 (472)
351 1q3t_A Cytidylate kinase; nucl 95.2 0.014 4.9E-07 51.1 4.1 27 52-78 15-41 (236)
352 3p32_A Probable GTPase RV1496/ 95.2 0.042 1.4E-06 51.4 7.5 40 51-91 77-116 (355)
353 4tmk_A Protein (thymidylate ki 95.1 0.039 1.3E-06 47.5 6.6 29 53-81 3-31 (213)
354 3lv8_A DTMP kinase, thymidylat 95.1 0.035 1.2E-06 48.6 6.4 29 53-81 27-55 (236)
355 2xzl_A ATP-dependent helicase 95.1 0.023 7.7E-07 59.2 6.0 39 34-79 363-401 (802)
356 2qmh_A HPR kinase/phosphorylas 95.1 0.01 3.6E-07 50.1 2.8 26 53-78 34-59 (205)
357 1g8f_A Sulfate adenylyltransfe 95.1 0.019 6.5E-07 56.2 5.1 29 51-79 393-421 (511)
358 2xgj_A ATP-dependent RNA helic 95.1 0.11 3.8E-06 55.4 11.4 97 53-157 101-207 (1010)
359 2whx_A Serine protease/ntpase/ 95.1 0.041 1.4E-06 55.5 7.7 37 52-91 185-222 (618)
360 1mv5_A LMRA, multidrug resista 95.1 0.011 3.6E-07 52.3 2.9 27 52-78 27-53 (243)
361 1nlf_A Regulatory protein REPA 95.0 0.015 5.2E-07 52.4 3.9 28 52-79 29-56 (279)
362 2jeo_A Uridine-cytidine kinase 95.0 0.016 5.5E-07 51.1 4.0 27 52-78 24-50 (245)
363 2gks_A Bifunctional SAT/APS ki 95.0 0.029 9.9E-07 55.6 6.2 41 40-80 357-399 (546)
364 1vht_A Dephospho-COA kinase; s 95.0 0.015 5.3E-07 50.1 3.8 23 53-75 4-26 (218)
365 1yks_A Genome polyprotein [con 95.0 0.041 1.4E-06 53.1 7.1 28 52-79 7-35 (440)
366 3ozx_A RNAse L inhibitor; ATP 95.0 0.023 7.9E-07 56.3 5.3 28 52-79 293-320 (538)
367 3l0o_A Transcription terminati 95.0 0.04 1.4E-06 51.5 6.5 49 42-91 164-212 (427)
368 1zu4_A FTSY; GTPase, signal re 95.0 0.053 1.8E-06 49.9 7.4 29 53-81 105-133 (320)
369 3tif_A Uncharacterized ABC tra 95.0 0.013 4.6E-07 51.3 3.2 27 52-78 30-56 (235)
370 3d3q_A TRNA delta(2)-isopenten 95.0 0.014 4.9E-07 53.8 3.5 25 54-78 8-32 (340)
371 3j16_B RLI1P; ribosome recycli 94.9 0.018 6.3E-07 57.7 4.6 27 52-78 102-128 (608)
372 1gm5_A RECG; helicase, replica 94.9 0.14 4.7E-06 53.0 11.0 43 33-76 370-412 (780)
373 2h92_A Cytidylate kinase; ross 94.8 0.018 6.1E-07 49.7 3.6 25 54-78 4-28 (219)
374 4a2p_A RIG-I, retinoic acid in 94.8 0.35 1.2E-05 47.7 13.5 38 33-77 9-46 (556)
375 2db3_A ATP-dependent RNA helic 94.8 0.27 9.3E-06 47.1 12.3 26 53-78 93-119 (434)
376 4f92_B U5 small nuclear ribonu 94.8 0.059 2E-06 60.7 8.5 39 52-92 941-980 (1724)
377 1nrj_B SR-beta, signal recogni 94.8 0.021 7.2E-07 49.1 4.0 26 52-77 11-36 (218)
378 2cbz_A Multidrug resistance-as 94.8 0.016 5.6E-07 50.9 3.2 27 52-78 30-56 (237)
379 3thx_B DNA mismatch repair pro 94.8 0.071 2.4E-06 56.0 8.5 23 53-75 673-695 (918)
380 2oap_1 GSPE-2, type II secreti 94.7 0.025 8.5E-07 55.6 4.8 35 42-78 251-285 (511)
381 2dyk_A GTP-binding protein; GT 94.7 0.019 6.5E-07 46.4 3.4 23 54-76 2-24 (161)
382 2pcj_A ABC transporter, lipopr 94.7 0.014 4.8E-07 50.8 2.6 26 52-77 29-54 (224)
383 3tbk_A RIG-I helicase domain; 94.7 0.58 2E-05 46.0 14.8 38 33-77 6-43 (555)
384 1x6v_B Bifunctional 3'-phospho 94.7 0.032 1.1E-06 55.9 5.5 37 52-91 51-87 (630)
385 1m8p_A Sulfate adenylyltransfe 94.7 0.025 8.6E-07 56.4 4.7 29 52-80 395-423 (573)
386 3eph_A TRNA isopentenyltransfe 94.7 0.019 6.7E-07 54.1 3.6 25 54-78 3-27 (409)
387 2f6r_A COA synthase, bifunctio 94.6 0.019 6.5E-07 51.8 3.5 23 53-75 75-97 (281)
388 3cr8_A Sulfate adenylyltranfer 94.6 0.022 7.4E-07 56.5 4.1 30 51-80 367-396 (552)
389 3b85_A Phosphate starvation-in 94.6 0.018 6.1E-07 49.5 3.1 28 52-80 21-48 (208)
390 3cph_A RAS-related protein SEC 94.6 0.02 6.9E-07 48.8 3.5 24 53-76 20-43 (213)
391 2gza_A Type IV secretion syste 94.6 0.028 9.7E-07 52.7 4.7 36 42-79 166-201 (361)
392 2www_A Methylmalonic aciduria 94.6 0.096 3.3E-06 48.8 8.2 28 53-80 74-101 (349)
393 1tq4_A IIGP1, interferon-induc 94.6 0.04 1.4E-06 52.5 5.7 25 53-77 69-93 (413)
394 1b0u_A Histidine permease; ABC 94.6 0.019 6.6E-07 51.2 3.3 27 52-78 31-57 (262)
395 1wp9_A ATP-dependent RNA helic 94.5 0.098 3.4E-06 50.4 8.6 41 30-78 8-48 (494)
396 3kta_A Chromosome segregation 94.5 0.021 7.2E-07 47.6 3.2 26 53-78 26-51 (182)
397 2axn_A 6-phosphofructo-2-kinas 94.5 0.034 1.2E-06 54.8 5.2 29 53-81 35-63 (520)
398 2iw3_A Elongation factor 3A; a 94.5 0.16 5.4E-06 53.6 10.2 23 53-75 461-483 (986)
399 1sgw_A Putative ABC transporte 94.5 0.02 6.7E-07 49.4 2.9 27 52-78 34-60 (214)
400 1z2a_A RAS-related protein RAB 94.5 0.024 8.3E-07 46.1 3.4 24 53-76 5-28 (168)
401 2zu0_C Probable ATP-dependent 94.4 0.026 8.7E-07 50.6 3.8 25 52-76 45-69 (267)
402 2f9l_A RAB11B, member RAS onco 94.4 0.024 8.1E-07 48.0 3.5 22 55-76 7-28 (199)
403 2qm8_A GTPase/ATPase; G protei 94.4 0.058 2E-06 50.0 6.3 30 51-80 53-82 (337)
404 2olj_A Amino acid ABC transpor 94.4 0.022 7.6E-07 50.8 3.3 27 52-78 49-75 (263)
405 2ocp_A DGK, deoxyguanosine kin 94.4 0.022 7.7E-07 50.0 3.3 26 53-78 2-27 (241)
406 1oix_A RAS-related protein RAB 94.4 0.021 7.3E-07 48.0 3.0 24 54-77 30-53 (191)
407 2ghi_A Transport protein; mult 94.4 0.022 7.6E-07 50.7 3.2 26 52-77 45-70 (260)
408 3sop_A Neuronal-specific septi 94.4 0.024 8.1E-07 50.9 3.4 24 55-78 4-27 (270)
409 2pze_A Cystic fibrosis transme 94.4 0.02 7E-07 49.9 2.9 27 52-78 33-59 (229)
410 1zj6_A ADP-ribosylation factor 94.3 0.044 1.5E-06 45.7 4.9 27 49-75 12-38 (187)
411 2d2e_A SUFC protein; ABC-ATPas 94.3 0.024 8.3E-07 50.2 3.4 25 52-76 28-52 (250)
412 1wms_A RAB-9, RAB9, RAS-relate 94.3 0.027 9.2E-07 46.3 3.5 24 53-76 7-30 (177)
413 1ek0_A Protein (GTP-binding pr 94.3 0.027 9.1E-07 45.9 3.4 22 55-76 5-26 (170)
414 2onk_A Molybdate/tungstate ABC 94.3 0.027 9.3E-07 49.5 3.6 25 54-78 25-49 (240)
415 1g6h_A High-affinity branched- 94.3 0.02 6.9E-07 50.9 2.9 27 52-78 32-58 (257)
416 1vpl_A ABC transporter, ATP-bi 94.3 0.024 8.1E-07 50.4 3.3 27 52-78 40-66 (256)
417 1m2o_B GTP-binding protein SAR 94.3 0.024 8.4E-07 47.6 3.3 25 52-76 22-46 (190)
418 2ff7_A Alpha-hemolysin translo 94.3 0.021 7.1E-07 50.5 2.9 27 52-78 34-60 (247)
419 2f1r_A Molybdopterin-guanine d 94.3 0.016 5.3E-07 48.1 1.9 40 54-94 3-42 (171)
420 2ixe_A Antigen peptide transpo 94.3 0.023 8E-07 50.9 3.2 27 52-78 44-70 (271)
421 3tmk_A Thymidylate kinase; pho 94.3 0.031 1E-06 48.2 3.8 28 52-79 4-31 (216)
422 3fvq_A Fe(3+) IONS import ATP- 94.3 0.025 8.5E-07 52.8 3.5 27 52-78 29-55 (359)
423 2lkc_A Translation initiation 94.3 0.032 1.1E-06 45.9 3.9 24 52-75 7-30 (178)
424 3hjn_A DTMP kinase, thymidylat 94.3 0.082 2.8E-06 44.8 6.5 26 56-81 3-28 (197)
425 3bfv_A CAPA1, CAPB2, membrane 94.3 0.086 2.9E-06 47.2 6.9 58 34-94 63-121 (271)
426 4f4c_A Multidrug resistance pr 94.3 0.021 7.1E-07 62.9 3.3 27 52-78 1104-1130(1321)
427 3tqf_A HPR(Ser) kinase; transf 94.3 0.026 8.9E-07 46.5 3.1 25 52-76 15-39 (181)
428 1z0j_A RAB-22, RAS-related pro 94.3 0.029 9.8E-07 45.7 3.5 24 54-77 7-30 (170)
429 2wv9_A Flavivirin protease NS2 94.3 0.12 4E-06 52.7 8.6 37 52-91 240-277 (673)
430 2nzj_A GTP-binding protein REM 94.3 0.027 9.3E-07 46.2 3.3 23 54-76 5-27 (175)
431 1ji0_A ABC transporter; ATP bi 94.3 0.022 7.5E-07 50.1 2.9 27 52-78 31-57 (240)
432 2wji_A Ferrous iron transport 94.3 0.025 8.6E-07 46.2 3.1 22 54-75 4-25 (165)
433 1ky3_A GTP-binding protein YPT 94.2 0.03 1E-06 46.2 3.5 24 53-76 8-31 (182)
434 1z08_A RAS-related protein RAB 94.2 0.03 1E-06 45.6 3.5 23 54-76 7-29 (170)
435 2qi9_C Vitamin B12 import ATP- 94.2 0.023 8E-07 50.2 2.9 27 52-78 25-51 (249)
436 2gj8_A MNME, tRNA modification 94.2 0.026 8.7E-07 46.6 3.0 25 52-76 3-27 (172)
437 2zej_A Dardarin, leucine-rich 94.2 0.023 7.7E-07 47.5 2.6 21 55-75 4-24 (184)
438 3cio_A ETK, tyrosine-protein k 94.1 0.097 3.3E-06 47.6 7.0 58 34-94 85-143 (299)
439 2yz2_A Putative ABC transporte 94.1 0.027 9.2E-07 50.4 3.2 26 52-77 32-57 (266)
440 1g16_A RAS-related protein SEC 94.1 0.028 9.7E-07 45.8 3.2 23 54-76 4-26 (170)
441 2yyz_A Sugar ABC transporter, 94.1 0.031 1.1E-06 52.2 3.7 27 52-78 28-54 (359)
442 2it1_A 362AA long hypothetical 94.1 0.032 1.1E-06 52.2 3.8 27 52-78 28-54 (362)
443 1moz_A ARL1, ADP-ribosylation 94.1 0.025 8.6E-07 46.9 2.8 24 51-74 16-39 (183)
444 3rlf_A Maltose/maltodextrin im 94.1 0.032 1.1E-06 52.4 3.8 27 52-78 28-54 (381)
445 3rc3_A ATP-dependent RNA helic 94.1 0.036 1.2E-06 56.4 4.4 19 52-70 154-172 (677)
446 1f2t_A RAD50 ABC-ATPase; DNA d 94.0 0.033 1.1E-06 45.0 3.3 26 53-78 23-48 (149)
447 2erx_A GTP-binding protein DI- 94.0 0.032 1.1E-06 45.5 3.3 22 54-75 4-25 (172)
448 1z47_A CYSA, putative ABC-tran 94.0 0.03 1E-06 52.2 3.4 27 52-78 40-66 (355)
449 4ag6_A VIRB4 ATPase, type IV s 94.0 0.049 1.7E-06 51.6 5.0 29 52-80 34-62 (392)
450 2nq2_C Hypothetical ABC transp 94.0 0.026 8.8E-07 50.1 2.8 27 52-78 30-56 (253)
451 4f4c_A Multidrug resistance pr 94.0 0.044 1.5E-06 60.3 5.2 27 52-78 443-469 (1321)
452 1upt_A ARL1, ADP-ribosylation 94.0 0.038 1.3E-06 45.1 3.7 24 53-76 7-30 (171)
453 2ihy_A ABC transporter, ATP-bi 94.0 0.026 9E-07 50.8 2.9 27 52-78 46-72 (279)
454 2i4i_A ATP-dependent RNA helic 94.0 0.75 2.6E-05 43.4 13.4 25 53-77 52-77 (417)
455 1v43_A Sugar-binding transport 94.0 0.035 1.2E-06 52.1 3.8 27 52-78 36-62 (372)
456 1r2q_A RAS-related protein RAB 94.0 0.035 1.2E-06 45.2 3.4 23 54-76 7-29 (170)
457 1bif_A 6-phosphofructo-2-kinas 94.0 0.049 1.7E-06 53.0 5.0 30 52-81 38-67 (469)
458 2pt7_A CAG-ALFA; ATPase, prote 94.0 0.038 1.3E-06 51.1 4.0 48 40-93 160-207 (330)
459 3q85_A GTP-binding protein REM 94.0 0.033 1.1E-06 45.4 3.3 21 55-75 4-24 (169)
460 3gmt_A Adenylate kinase; ssgci 94.0 0.031 1E-06 48.6 3.1 24 55-78 10-33 (230)
461 3nh6_A ATP-binding cassette SU 93.9 0.013 4.4E-07 53.6 0.7 27 52-78 79-105 (306)
462 2qe7_A ATP synthase subunit al 93.9 0.084 2.9E-06 51.1 6.2 103 44-156 153-268 (502)
463 4gzl_A RAS-related C3 botulinu 93.9 0.033 1.1E-06 47.4 3.2 28 49-76 26-53 (204)
464 3bc1_A RAS-related protein RAB 93.9 0.037 1.3E-06 46.2 3.4 23 54-76 12-34 (195)
465 2r9v_A ATP synthase subunit al 93.8 0.12 4.2E-06 50.0 7.3 103 44-156 166-281 (515)
466 2ck3_A ATP synthase subunit al 93.8 0.18 6.2E-06 48.8 8.4 107 44-156 153-276 (510)
467 3d31_A Sulfate/molybdate ABC t 93.8 0.029 9.8E-07 52.2 2.8 26 52-77 25-50 (348)
468 1g29_1 MALK, maltose transport 93.8 0.035 1.2E-06 52.2 3.4 27 52-78 28-54 (372)
469 1svi_A GTP-binding protein YSX 93.8 0.038 1.3E-06 46.4 3.3 25 52-76 22-46 (195)
470 2oil_A CATX-8, RAS-related pro 93.7 0.04 1.4E-06 46.2 3.5 24 53-76 25-48 (193)
471 1fx0_B ATP synthase beta chain 93.7 0.13 4.5E-06 49.6 7.4 34 48-81 160-193 (498)
472 2fn4_A P23, RAS-related protei 93.7 0.037 1.3E-06 45.6 3.2 24 53-76 9-32 (181)
473 3q72_A GTP-binding protein RAD 93.7 0.033 1.1E-06 45.3 2.8 21 55-75 4-24 (166)
474 2y8e_A RAB-protein 6, GH09086P 93.7 0.037 1.2E-06 45.5 3.2 23 54-76 15-37 (179)
475 2efe_B Small GTP-binding prote 93.7 0.042 1.4E-06 45.3 3.5 23 54-76 13-35 (181)
476 2hxs_A RAB-26, RAS-related pro 93.7 0.04 1.4E-06 45.3 3.3 24 53-76 6-29 (178)
477 1yrb_A ATP(GTP)binding protein 93.7 0.08 2.7E-06 46.8 5.5 37 53-91 14-50 (262)
478 2wjg_A FEOB, ferrous iron tran 93.7 0.039 1.3E-06 46.0 3.3 22 54-75 8-29 (188)
479 3fdi_A Uncharacterized protein 93.7 0.043 1.5E-06 46.7 3.6 25 54-78 7-31 (201)
480 3bwd_D RAC-like GTP-binding pr 93.7 0.049 1.7E-06 44.9 3.8 25 52-76 7-31 (182)
481 1f6b_A SAR1; gtpases, N-termin 93.7 0.035 1.2E-06 47.0 2.9 24 52-75 24-47 (198)
482 2atv_A RERG, RAS-like estrogen 93.6 0.047 1.6E-06 46.0 3.7 26 51-76 26-51 (196)
483 3clv_A RAB5 protein, putative; 93.6 0.044 1.5E-06 46.1 3.5 24 53-76 7-30 (208)
484 2g6b_A RAS-related protein RAB 93.6 0.045 1.5E-06 45.1 3.4 24 53-76 10-33 (180)
485 1m7b_A RND3/RHOE small GTP-bin 93.6 0.04 1.4E-06 45.8 3.2 24 53-76 7-30 (184)
486 3ihw_A Centg3; RAS, centaurin, 93.6 0.046 1.6E-06 45.6 3.5 24 53-76 20-43 (184)
487 3con_A GTPase NRAS; structural 93.6 0.045 1.5E-06 45.7 3.4 23 54-76 22-44 (190)
488 3end_A Light-independent proto 93.6 0.096 3.3E-06 47.7 5.9 61 30-91 18-78 (307)
489 2bme_A RAB4A, RAS-related prot 93.6 0.041 1.4E-06 45.7 3.2 23 54-76 11-33 (186)
490 2pjz_A Hypothetical protein ST 93.5 0.037 1.3E-06 49.3 3.0 25 53-77 30-54 (263)
491 1p5z_B DCK, deoxycytidine kina 93.5 0.017 5.8E-07 51.5 0.7 27 52-78 23-49 (263)
492 3tw8_B RAS-related protein RAB 93.5 0.042 1.4E-06 45.3 3.1 23 53-75 9-31 (181)
493 2dpy_A FLII, flagellum-specifi 93.5 0.077 2.6E-06 51.0 5.3 46 44-93 148-193 (438)
494 1h65_A Chloroplast outer envel 93.5 0.083 2.9E-06 47.2 5.3 39 37-75 22-61 (270)
495 1ksh_A ARF-like protein 2; sma 93.5 0.045 1.5E-06 45.5 3.3 26 51-76 16-41 (186)
496 3c5c_A RAS-like protein 12; GD 93.5 0.049 1.7E-06 45.5 3.5 24 53-76 21-44 (187)
497 2yv5_A YJEQ protein; hydrolase 93.4 0.064 2.2E-06 48.9 4.5 24 53-77 165-188 (302)
498 2cxx_A Probable GTP-binding pr 93.4 0.038 1.3E-06 46.0 2.8 22 55-76 3-24 (190)
499 2bbs_A Cystic fibrosis transme 93.4 0.038 1.3E-06 50.0 2.9 27 52-78 63-89 (290)
500 3gd7_A Fusion complex of cysti 93.4 0.044 1.5E-06 51.8 3.5 27 52-78 46-72 (390)
No 1
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=100.00 E-value=6.3e-40 Score=317.15 Aligned_cols=371 Identities=16% Similarity=0.176 Sum_probs=299.1
Q ss_pred HHHhhcCCCCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhC---CCCeEEEEEc
Q 014789 15 LRSRLCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEY---PDTISVIKLN 91 (418)
Q Consensus 15 ~~~~~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~---~~~~~~v~in 91 (418)
.++..|++.|.| +.++||+++++.+...+...+....+++++|+||||||||++++.+++.+.... +....++++|
T Consensus 7 ~~~~~l~~~~~p-~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 7 RKRWVLLPDYVP-DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp SCHHHHSTTCCC-SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred hCHHhcCCccCC-CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 356788999998 799999999999999998877777788999999999999999999999886542 1137889999
Q ss_pred cccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--chhHHHHHHhhh
Q 014789 92 GLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--KQRLLYSLLDAM 169 (418)
Q Consensus 92 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--~~~~L~~l~~~~ 169 (418)
|....++..++..++.+++... +..+.+..+..+.+.+.+.. .+.+.||+|||+|.+... .++.|+.++++.
T Consensus 86 ~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~l~~~l~~---~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 86 ARHRETPYRVASAIAEAVGVRV---PFTGLSVGEVYERLVKRLSR---LRGIYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp TTTSCSHHHHHHHHHHHHSCCC---CSSCCCHHHHHHHHHHHHTT---SCSEEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred CCcCCCHHHHHHHHHHHhCCCC---CCCCCCHHHHHHHHHHHHhc---cCCeEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 9999898889999998885421 22344566666777766654 346999999999999887 789999999987
Q ss_pred ccC--CCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhC
Q 014789 170 QSV--TSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILA 247 (418)
Q Consensus 170 ~~~--~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (418)
... ..++.+|+++|..++.+.+.+++.+|+....+.|+||+.+++.+++..++..... ...++
T Consensus 160 ~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~---------------~~~~~ 224 (387)
T 2v1u_A 160 QELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFN---------------PGVLD 224 (387)
T ss_dssp GCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBC---------------TTTBC
T ss_pred hhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhcc---------------CCCCC
Confidence 643 4688999999998766778899999998668999999999999999998741000 01345
Q ss_pred ChhHHHHHHHHhccccCHHHHHHHHHHHhhcccc-cCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHHhhhhh
Q 014789 248 DGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDL-ESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCLKRLEV 326 (418)
Q Consensus 248 ~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~-~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~~~l~~ 326 (418)
++.+..+.+......||+|.+++++..|+..+.. +...|+.+||.+|+.....+...+.+.+|+.+++.+|.+++.+..
T Consensus 225 ~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~~l~a~~~~~~ 304 (387)
T 2v1u_A 225 PDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERDRVSEVVRTLPLHAKLVLLSIMMLED 304 (387)
T ss_dssp SSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5666666666555569999999999998877653 667899999999998887777788999999999999999997655
Q ss_pred hcCCcccHHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhCCcceeecCCCCccccccccEEEecCHHHHHHHHhhCC
Q 014789 327 KEQNSYNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFEHLLQRELICFTDNRGYSQSVEFRPVKLLISSIELHQGLKSYC 406 (418)
Q Consensus 327 ~~~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~g~~~~~~~~~~~l~~~~~~v~~~~~~~~ 406 (418)
+...++++++|+.|..+|+..+. .+.+...+..+++.|..+|++..... |+|..++++.++|.+++++|.+++++++
T Consensus 305 -~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~L~~~gli~~~~~-~~g~~g~~~~~~l~~~~~~i~~~l~~~~ 381 (387)
T 2v1u_A 305 -GGRPASTGEIYERYKELTSTLGL-EHVTLRRVSGIISELDMLGIVKSRVV-SRGRYGKTREVSLDADRLAVENALSEDP 381 (387)
T ss_dssp -SSCCEEHHHHHHHHHHHHHHTTC-CCCCHHHHHHHHHHHHHTTSEEEEEE-ECGGGCEEEEEEECSCHHHHHHHHHHST
T ss_pred -CCCCCcHHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhCCCeEEEee-cCCCCCceeEEEecCCHHHHHHHHhccH
Confidence 56789999999999999999885 45567788899999999999987532 2235678999999999999999999998
Q ss_pred CCCH
Q 014789 407 SCPV 410 (418)
Q Consensus 407 ~~~~ 410 (418)
.+..
T Consensus 382 ~~~~ 385 (387)
T 2v1u_A 382 FVAR 385 (387)
T ss_dssp TGGG
T ss_pred hhhh
Confidence 6643
No 2
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=100.00 E-value=9.9e-38 Score=301.55 Aligned_cols=371 Identities=15% Similarity=0.209 Sum_probs=284.3
Q ss_pred HHHHhhcCCCCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccc
Q 014789 14 LLRSRLCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGL 93 (418)
Q Consensus 14 ~~~~~~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~ 93 (418)
+.++..+++.+.| +.++||+++++.+...+...+.+..+.+++|+||+|+|||++++.+++.+....+....+++++|.
T Consensus 7 ~~~~~~l~~~~~p-~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 7 FINREYLLPDYIP-DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp BSCGGGGSSSCCC-SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred ccchhhCCCccCC-CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 4567889999998 799999999999999998877777788999999999999999999999887653213678999998
Q ss_pred cCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-chhHHHHHHhhhcc-
Q 014789 94 LHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-KQRLLYSLLDAMQS- 171 (418)
Q Consensus 94 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-~~~~L~~l~~~~~~- 171 (418)
...+...++..++.+++... +..+.+..+..+.+.+.+... +.+.||+|||+|.+... .+..++.++++.+.
T Consensus 86 ~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~~l~~~l~~~---~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~ 159 (386)
T 2qby_A 86 QIDTPYRVLADLLESLDVKV---PFTGLSIAELYRRLVKAVRDY---GSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV 159 (386)
T ss_dssp HHCSHHHHHHHHTTTTSCCC---CSSSCCHHHHHHHHHHHHHTC---CSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHhCCCC---CCCCCCHHHHHHHHHHHHhcc---CCeEEEEEcChhhhhccCcCHHHHHHhhchhhc
Confidence 87777777777766653221 123334566667777777643 35899999999999876 37888888887643
Q ss_pred CCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcC-CCCCCCChHHHHHHHHHHHHHhCChh
Q 014789 172 VTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSL-PVDSSLPHAYAVEFNKKIKNILADGR 250 (418)
Q Consensus 172 ~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (418)
...++.+|++++..++.+.+.+++.+|+..+.+.|+|++.+++.+++..++.. .... .++++.
T Consensus 160 ~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~----------------~~~~~~ 223 (386)
T 2qby_A 160 NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPG----------------VLPDNV 223 (386)
T ss_dssp CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSS----------------CSCHHH
T ss_pred CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCC----------------CCCHHH
Confidence 34688999999988766777888999997678999999999999999998641 0011 122333
Q ss_pred HHHHHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHHhhhhhhcC
Q 014789 251 FKEIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCLKRLEVKEQ 329 (418)
Q Consensus 251 ~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~~~l~~~~~ 329 (418)
+..+........|++|.++++|..+...+. .+...|+.+||.+|+.....+...+.+.++|.+++.+|.|++.+...+.
T Consensus 224 ~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~ 303 (386)
T 2qby_A 224 IKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERDRVRDIILTLPFHSKLVLMAVVSISSEEN 303 (386)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhchHHHHHHcCCHHHHHHHHHHHHHHhcCC
Confidence 333444333345999999999999887765 3667899999999998887677788899999999999999997765455
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhCCcceeecCCCCccccccccEEEecCHHHHHHHHhh-CCCC
Q 014789 330 NSYNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFEHLLQRELICFTDNRGYSQSVEFRPVKLLISSIELHQGLKS-YCSC 408 (418)
Q Consensus 330 ~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~g~~~~~~~~~~~l~~~~~~v~~~~~~-~~~~ 408 (418)
.+++++++|+.|..+|+..+.. +.+...+..+++.|.++|+|..... |++..+.|+.++|.+++++|.+++++ ++.+
T Consensus 304 ~~~~~~~l~~~~~~~~~~~g~~-~~~~~~~~~~l~~L~~~gli~~~~~-~~~~~g~y~~~~l~~~~~~v~~~l~~~~~~~ 381 (386)
T 2qby_A 304 VVSTTGAVYETYLNICKKLGVE-AVTQRRVSDIINELDMVGILTAKVV-NRGRYGKTKEIGLAVDKNIIVRSLIESDSRF 381 (386)
T ss_dssp -CEEHHHHHHHHHHHHHHHTCC-CCCHHHHHHHHHHHHHHTSEEEEEC-CCTTSCCCEEEEESSCSHHHHHHHHHHC---
T ss_pred CceeHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhCCCEEEEee-cCCCCCCeEEEEeCCCHHHHHHHHhcCChhh
Confidence 7789999999999999998853 3455677899999999999976432 33456789999999999999999999 8765
Q ss_pred C
Q 014789 409 P 409 (418)
Q Consensus 409 ~ 409 (418)
.
T Consensus 382 ~ 382 (386)
T 2qby_A 382 A 382 (386)
T ss_dssp -
T ss_pred h
Confidence 3
No 3
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=100.00 E-value=2.2e-36 Score=292.67 Aligned_cols=362 Identities=14% Similarity=0.164 Sum_probs=283.4
Q ss_pred HHhhcCCCCccCCCCCChhhhHHHHHHHHHHHHhcCCCc--eEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccc
Q 014789 16 RSRLCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNN--SILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGL 93 (418)
Q Consensus 16 ~~~~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~--~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~ 93 (418)
++..+++.|.| +.++||+++++.+...+...+.+..+. +++|+||||+|||++++.+++.+.... .+.+++++|.
T Consensus 6 ~~~~l~~~~~p-~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~i~~~ 82 (389)
T 1fnn_A 6 DDSVFSPSYVP-KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT--TARFVYINGF 82 (389)
T ss_dssp CGGGGSTTCCC-SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC--CCEEEEEETT
T ss_pred CHhhcCCccCC-CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc--CeeEEEEeCc
Confidence 46788999998 789999999999999999988877767 899999999999999999999886542 2678999998
Q ss_pred cCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccC-
Q 014789 94 LHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSV- 172 (418)
Q Consensus 94 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~- 172 (418)
...+...++..++..++... +..+.+..+..+.+.+.+... +.+.||+|||+|.+. ...++.|+++.+..
T Consensus 83 ~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~l~~~l~~~---~~~~vlilDE~~~l~---~~~~~~L~~~~~~~~ 153 (389)
T 1fnn_A 83 IYRNFTAIIGEIARSLNIPF---PRRGLSRDEFLALLVEHLRER---DLYMFLVLDDAFNLA---PDILSTFIRLGQEAD 153 (389)
T ss_dssp TCCSHHHHHHHHHHHTTCCC---CSSCCCHHHHHHHHHHHHHHT---TCCEEEEEETGGGSC---HHHHHHHHHHTTCHH
T ss_pred cCCCHHHHHHHHHHHhCccC---CCCCCCHHHHHHHHHHHHhhc---CCeEEEEEECccccc---hHHHHHHHHHHHhCC
Confidence 88888888888888774321 223445666777777777653 368999999999993 45666666665432
Q ss_pred C---CcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCCh
Q 014789 173 T---SQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADG 249 (418)
Q Consensus 173 ~---~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (418)
. .++.+|++++..++.+.+.+++.+|+....+.|+||+.+++.+++..++..... ...++++
T Consensus 154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~---------------~~~~~~~ 218 (389)
T 1fnn_A 154 KLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA---------------EGSYSED 218 (389)
T ss_dssp HHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC---------------TTSSCHH
T ss_pred CCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC---------------CCCCCHH
Confidence 1 588999999987777778889999998668999999999999999998741000 0123445
Q ss_pred hHHHHHHHHhcc------ccCHHHHHHHHHHHhhcccc-cCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHHh
Q 014789 250 RFKEIVNTLVNL------DSTVNHLLRFLFLAVSYMDL-ESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCLK 322 (418)
Q Consensus 250 ~~~~~~~~~~~~------~gd~r~~~~~l~~a~~~a~~-~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~~ 322 (418)
.+..+.+..+.. .|++|.+++++..|...+.. +...|+.++|.++..........+.+.+|+.+++.+|.+++
T Consensus 219 ~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~ 298 (389)
T 1fnn_A 219 ILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIV 298 (389)
T ss_dssp HHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHH
Confidence 555555555444 69999999999998877643 56789999999999998888889999999999999999999
Q ss_pred hhhh-hcCCcccHHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhCCcceeecCC-CCccccccccEEEecCHHHHHH
Q 014789 323 RLEV-KEQNSYNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFEHLLQRELICFTDNR-GYSQSVEFRPVKLLISSIELHQ 400 (418)
Q Consensus 323 ~l~~-~~~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~-g~~~~~~~~~~~l~~~~~~v~~ 400 (418)
.+.. .+...++++++++.|..+|+..+.. +.+...+..+++.|.++|+|.....+ |+|..++++.++|.+++++|.+
T Consensus 299 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~ 377 (389)
T 1fnn_A 299 RSLKISHTPYITFGDAEESYKIVCEEYGER-PRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLE 377 (389)
T ss_dssp HHHHHHCSSCEEHHHHHHHHHHHHHHTTCC-CCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHH
T ss_pred HHHhhccCCCccHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHH
Confidence 8764 2233899999999999999998754 35667788999999999999876541 4445678999999999999999
Q ss_pred HHhhC
Q 014789 401 GLKSY 405 (418)
Q Consensus 401 ~~~~~ 405 (418)
++.++
T Consensus 378 ~~~~~ 382 (389)
T 1fnn_A 378 AVITK 382 (389)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98775
No 4
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.5e-35 Score=286.47 Aligned_cols=353 Identities=16% Similarity=0.162 Sum_probs=280.1
Q ss_pred HHHhhcCCCCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCC----C-CeEEEE
Q 014789 15 LRSRLCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYP----D-TISVIK 89 (418)
Q Consensus 15 ~~~~~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~----~-~~~~v~ 89 (418)
.++..+++.+.| +.++||+++++.+...+...+.+..+++++|+||||||||++++.+++.+....+ . ...+++
T Consensus 8 ~~~~~l~~~~~p-~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~ 86 (384)
T 2qby_B 8 NPKVFIDPLSVF-KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAY 86 (384)
T ss_dssp CTTTTTCHHHHC-SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEE
T ss_pred ccHhhcCCccCC-CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEE
Confidence 456678888888 7899999999999999999888888889999999999999999999998865411 1 377899
Q ss_pred EccccCC-ChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-chhH-HHHHH
Q 014789 90 LNGLLHS-DDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-KQRL-LYSLL 166 (418)
Q Consensus 90 in~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-~~~~-L~~l~ 166 (418)
+||.... ++..++..++.++.... ....+.+..+..+.+.+.+... ++ ||+|||+|.+... .++. ++.++
T Consensus 87 i~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~~----~~-vlilDEi~~l~~~~~~~~~l~~l~ 159 (384)
T 2qby_B 87 VNCREVGGTPQAVLSSLAGKLTGFS--VPKHGINLGEYIDKIKNGTRNI----RA-IIYLDEVDTLVKRRGGDIVLYQLL 159 (384)
T ss_dssp EEHHHHCSCHHHHHHHHHHHHHCSC--CCSSSSCTHHHHHHHHHHHSSS----CE-EEEEETTHHHHHSTTSHHHHHHHH
T ss_pred EECccCCCCHHHHHHHHHHHhcCCC--CCCCCCCHHHHHHHHHHHhccC----CC-EEEEECHHHhccCCCCceeHHHHh
Confidence 9998877 88888888888874221 1122334455566666665442 34 9999999999876 3788 99998
Q ss_pred hhhccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcC-CCCCCCChHHHHHHHHHHHHH
Q 014789 167 DAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSL-PVDSSLPHAYAVEFNKKIKNI 245 (418)
Q Consensus 167 ~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~-~~~~~~~~~~~~~~~~~~~~~ 245 (418)
++. .++.+|+++|..++.+.+++++.+||.. .+.|+||+.+++.+++..++.- .... .
T Consensus 160 ~~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~-~i~l~~l~~~~~~~il~~~~~~~~~~~----------------~ 218 (384)
T 2qby_B 160 RSD----ANISVIMISNDINVRDYMEPRVLSSLGP-SVIFKPYDAEQLKFILSKYAEYGLIKG----------------T 218 (384)
T ss_dssp TSS----SCEEEEEECSSTTTTTTSCHHHHHTCCC-EEEECCCCHHHHHHHHHHHHHHTSCTT----------------S
T ss_pred cCC----cceEEEEEECCCchHhhhCHHHHhcCCC-eEEECCCCHHHHHHHHHHHHHhhcccC----------------C
Confidence 875 6789999999987667788999999875 8999999999999999998741 1011 2
Q ss_pred hCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHHhhhh
Q 014789 246 LADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCLKRLE 325 (418)
Q Consensus 246 ~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~~~l~ 325 (418)
++++.+..+++......||+|.++++|..|+..+. +...|+.+||.+++.....+.+...+++|+.+++.+|.+++. .
T Consensus 219 ~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~-~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~l~al~~-~ 296 (384)
T 2qby_B 219 YDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS-GGGIIRKEHVDKAIVDYEQERLIEAVKALPFHYKLALRSLIE-S 296 (384)
T ss_dssp CCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-SSSCCCHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHT-C
T ss_pred cCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc-CCCccCHHHHHHHHHHHhcchHHHHHHcCCHHHHHHHHHHHH-h
Confidence 34555555555555556999999999999988876 667899999999999887777888899999999999999885 1
Q ss_pred hhcCCcccHHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhCCcceeecCCCCccccccccEEEecCHHHHHHHHhhC
Q 014789 326 VKEQNSYNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFEHLLQRELICFTDNRGYSQSVEFRPVKLLISSIELHQGLKSY 405 (418)
Q Consensus 326 ~~~~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~g~~~~~~~~~~~l~~~~~~v~~~~~~~ 405 (418)
.. -+++++.|..+|+..|.. +.+...+..+++.|.++|++.... .|++..+++++++|.+++++|.++++++
T Consensus 297 ~~------~~~~~~~~~~~~~~~g~~-~~~~~~~~~~l~~L~~~gli~~~~-~~~g~~g~~~~~~l~~~~~~v~~~l~~~ 368 (384)
T 2qby_B 297 ED------VMSAHKMYTDLCNKFKQK-PLSYRRFSDIISELDMFGIVKIRI-INRGRAGGVKKYALVEDKEKVLRALNET 368 (384)
T ss_dssp CB------HHHHHHHHHHHHHHTTCC-CCCHHHHHHHHHHHHHTTSEEEEE-ECCTTTTCCEEEEEESSSHHHHHHHHHH
T ss_pred cc------cChHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHhCCCEEEEe-ccCCCCCceEEEEecCCHHHHHHHHHHH
Confidence 11 168899999999998843 456677889999999999998643 3444567899999999999999999976
Q ss_pred C
Q 014789 406 C 406 (418)
Q Consensus 406 ~ 406 (418)
.
T Consensus 369 ~ 369 (384)
T 2qby_B 369 F 369 (384)
T ss_dssp H
T ss_pred h
Confidence 3
No 5
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-37 Score=283.67 Aligned_cols=266 Identities=12% Similarity=0.133 Sum_probs=200.6
Q ss_pred cCCCCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCC----CCeEEEEEccccC
Q 014789 20 CDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYP----DTISVIKLNGLLH 95 (418)
Q Consensus 20 ~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~----~~~~~v~in~~~~ 95 (418)
+.++|.|++.|+||++|++.|..+|..++.++.++++||+||||||||++++.+++++..... ..+.++++||...
T Consensus 12 l~~~~~~~~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 12 IRESLQKRELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred hhhccCCccccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence 334566655689999999999999999999999999999999999999999999999976532 1489999999999
Q ss_pred CChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCc
Q 014789 96 SDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQ 175 (418)
Q Consensus 96 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~ 175 (418)
.++..++..|++++.... .+.+ ...+.+..+++.+. ...+.+.||+|||+|.+. .|++||.+++|+....++
T Consensus 92 ~t~~~~~~~I~~~L~g~~---~~~~-~~~~~L~~~f~~~~--~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~ 163 (318)
T 3te6_A 92 AGMDALYEKIWFAISKEN---LCGD-ISLEALNFYITNVP--KAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSK 163 (318)
T ss_dssp C--HHHHHHHHHHHSCCC-----CC-CCHHHHHHHHHHSC--GGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCC
T ss_pred CCHHHHHHHHHHHhcCCC---CCch-HHHHHHHHHHHHhh--hccCCceEEEEecHHHhh--cchHHHHHHhcccccCCc
Confidence 999999999999995431 1111 12223333333221 123478999999999998 789999999998877789
Q ss_pred EEEEEeccCCChHH-HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCC---------------CChHHHHHHH
Q 014789 176 AVVIGVSCRLDADQ-LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSS---------------LPHAYAVEFN 239 (418)
Q Consensus 176 ~~lI~~s~~~~~~~-~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~---------------~~~~~~~~~~ 239 (418)
+++|+++|..++++ .+++++.||+..+.|.|+||+.+|+.+|+++|+....+.. +.+. -+
T Consensus 164 ~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~----~~ 239 (318)
T 3te6_A 164 LSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREG----QN 239 (318)
T ss_dssp EEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC---------
T ss_pred EEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccc----cc
Confidence 99999999998876 5789999999877899999999999999999997211100 0000 00
Q ss_pred HHH-------HHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccc----------cCCCCChhhHHHHHhc
Q 014789 240 KKI-------KNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDL----------ESGFLSFENFKTALSN 297 (418)
Q Consensus 240 ~~~-------~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~----------~~~~it~~~v~~a~~~ 297 (418)
... ...+++++++.++++++..+||+|+++++|+.|++.|+. +...||.+++.++..+
T Consensus 240 ~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~ 314 (318)
T 3te6_A 240 QKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSE 314 (318)
T ss_dssp ---CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHH
T ss_pred ccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHH
Confidence 000 003467778888888888899999999999999988742 3346777777666544
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=100.00 E-value=8.1e-34 Score=276.77 Aligned_cols=366 Identities=14% Similarity=0.150 Sum_probs=273.5
Q ss_pred HHHhhcCCCCccCCCCCChhhhHHHHHHHH-HHHHhc--CCCceEEE--ECCCCCchHHHHHHHHHHHhhhC---CCCeE
Q 014789 15 LRSRLCDPNFVVKHLSDSPDSNYSKLKFLV-SSSVTE--ACNNSILL--LGPRGSGKIAVLELILTDLLLEY---PDTIS 86 (418)
Q Consensus 15 ~~~~~~~~~~~~~~~l~gr~~e~~~l~~~l-~~~~~~--~~~~~ill--~G~~GtGKT~l~~~~~~~l~~~~---~~~~~ 86 (418)
.++..|+|.+.| +.++||++|++.|...+ .....+ ..+.+++| +||||+|||++++.+++.+.... ...+.
T Consensus 10 ~~~~~~~~~~~p-~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~ 88 (412)
T 1w5s_A 10 KDRRVFDENYIP-PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVK 88 (412)
T ss_dssp SCGGGGSTTCCC-SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred ccHhhcCCccCC-CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCcee
Confidence 456788899998 68999999999999999 887766 56788999 99999999999999999886531 11377
Q ss_pred EEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc---chhHHH
Q 014789 87 VIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG---KQRLLY 163 (418)
Q Consensus 87 ~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~---~~~~L~ 163 (418)
+++++|....+...++..++.+++... +..+.+..+....+.+.+... +++.||||||+|++... .+..++
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~l~~~l~~~---~~~~llvlDe~~~l~~~~~~~~~~l~ 162 (412)
T 1w5s_A 89 QAYVNAFNAPNLYTILSLIVRQTGYPI---QVRGAPALDILKALVDNLYVE---NHYLLVILDEFQSMLSSPRIAAEDLY 162 (412)
T ss_dssp EEEEEGGGCCSHHHHHHHHHHHHTCCC---CCTTCCHHHHHHHHHHHHHHH---TCEEEEEEESTHHHHSCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCC---CCCCCCHHHHHHHHHHHHHhc---CCeEEEEEeCHHHHhhccCcchHHHH
Confidence 899999887788888888888875431 122334556666777776532 36999999999999763 467888
Q ss_pred HHHhhhccC---C--CcEEEEEeccCCChHHHHH---HHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHH
Q 014789 164 SLLDAMQSV---T--SQAVVIGVSCRLDADQLLE---KRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYA 235 (418)
Q Consensus 164 ~l~~~~~~~---~--~~~~lI~~s~~~~~~~~l~---~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~ 235 (418)
.++++.... . .++.+|++++..++.+.+. +++.+++..+ +.|+|++.+++.+++..++......
T Consensus 163 ~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~-i~l~~l~~~e~~~ll~~~~~~~~~~------- 234 (412)
T 1w5s_A 163 TLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFK-LHLPAYKSRELYTILEQRAELGLRD------- 234 (412)
T ss_dssp HHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEE-EECCCCCHHHHHHHHHHHHHHHBCT-------
T ss_pred HHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCe-eeeCCCCHHHHHHHHHHHHHhcCCC-------
Confidence 877766532 3 7899999998777777788 8888998755 9999999999999999886410000
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHhccc---cCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccC-CCchhhhhcCC
Q 014789 236 VEFNKKIKNILADGRFKEIVNTLVNLD---STVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSH-RQPKLECIKDC 310 (418)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~-~~~~~~~l~~L 310 (418)
..++++.+..+........ |++|.++.++..+...+. .+...++.+++..+..... .......+..|
T Consensus 235 --------~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~~l~~l 306 (412)
T 1w5s_A 235 --------TVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEAL 306 (412)
T ss_dssp --------TSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------CCSSSSS
T ss_pred --------CCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccchHHHHHHcC
Confidence 0123333444444433334 999999999988776553 3556799999999988776 56667788999
Q ss_pred ChHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHH-hhcCCCCccChhHHHHHHHHHHhCCcceeecCCCCccccccccE
Q 014789 311 SILELYILVCLKRLEVKEQNSYNFNSVMKEYKSIH-DSFQTSDYYSRNVCLRAFEHLLQRELICFTDNRGYSQSVEFRPV 389 (418)
Q Consensus 311 ~~~~~~iL~a~~~l~~~~~~~~~~~~v~~~y~~~~-~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~~~g~~~~~~~~~~ 389 (418)
|.+++.+|.+++.+...+..+++++++|+.|..+| ...+.. ..+...+..+++.|.+.|+|.... .|++..++|+.+
T Consensus 307 ~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~L~~~gli~~~~-~~~~~~g~~~~~ 384 (412)
T 1w5s_A 307 SIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVK-PRGYTQYHIYLKHLTSLGLVDAKP-SGRGMRGRTTLF 384 (412)
T ss_dssp CHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCC-CCCHHHHHHHHHHHHHTTSEEEEC-C-------CCEE
T ss_pred CHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHhCCCEEeec-ccCCCCCceeEE
Confidence 99999999999877543556889999999999999 877653 345566778999999999998643 333456789999
Q ss_pred EEe--cCHHHHHHHHhhC
Q 014789 390 KLL--ISSIELHQGLKSY 405 (418)
Q Consensus 390 ~l~--~~~~~v~~~~~~~ 405 (418)
+|. +++++|.+++++.
T Consensus 385 ~l~~~~~~~~~~~~~~~~ 402 (412)
T 1w5s_A 385 RLAPHLPADRLIEVVDNI 402 (412)
T ss_dssp EECTTSCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 999 9999999998874
No 7
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=5e-20 Score=174.52 Aligned_cols=228 Identities=18% Similarity=0.213 Sum_probs=154.1
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.+.|.+++.++|.+.+...+.. ..+..+|||||||||||+++++++.++. ..++.+++....+.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~------~~fi~v~~s~l~sk 255 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS------ATFLRIVGSELIQK 255 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT------CEEEEEESGGGCCS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC------CCEEEEEHHHhhhc
Confidence 35789999999999988765543 2378999999999999999999999876 44577777654432
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc-----------hhHHHHHHh
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK-----------QRLLYSLLD 167 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~-----------~~~L~~l~~ 167 (418)
+ + +..+.....+++..+.. .|+||+|||+|.+...+ +..+..+++
T Consensus 256 ~--v------------------Gesek~ir~lF~~Ar~~----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~ 311 (437)
T 4b4t_I 256 Y--L------------------GDGPRLCRQIFKVAGEN----APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN 311 (437)
T ss_dssp S--S------------------SHHHHHHHHHHHHHHHT----CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHH
T ss_pred c--C------------------chHHHHHHHHHHHHHhc----CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHH
Confidence 0 0 11122333444444443 58999999999987641 245556665
Q ss_pred hhcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHH
Q 014789 168 AMQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS-LPVDSSLPHAYAVEFNKKI 242 (418)
Q Consensus 168 ~~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~-~~~~~~~~~~~~~~~~~~~ 242 (418)
.... ...+++||++||. ++.|++++.+ ||. +.|+|+.++.++..+|++..+. .+..
T Consensus 312 ~lDg~~~~~~ViVIaATNr---pd~LDpALlRpGRfD-~~I~v~lPd~~~R~~Il~~~l~~~~l~--------------- 372 (437)
T 4b4t_I 312 QLDGFDDRGDVKVIMATNK---IETLDPALIRPGRID-RKILFENPDLSTKKKILGIHTSKMNLS--------------- 372 (437)
T ss_dssp HHHHCCCSSSEEEEEEESC---STTCCTTSSCTTTEE-EEECCCCCCHHHHHHHHHHHHTTSCBC---------------
T ss_pred HhhCcCCCCCEEEEEeCCC---hhhcCHHHhcCCcee-EEEEcCCcCHHHHHHHHHHHhcCCCCC---------------
Confidence 5432 3468999999999 4578889987 886 6799999999999999998875 1111
Q ss_pred HHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcc-cccCCCCChhhHHHHHhccCCCchhhhhcCC
Q 014789 243 KNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYM-DLESGFLSFENFKTALSNSHRQPKLECIKDC 310 (418)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a-~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L 310 (418)
.+-.+..+++...+++| ..+..+|..|...| ..+...|+.+||.+|++++.+....+.+++|
T Consensus 373 ----~dvdl~~LA~~T~GfSG--ADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~~~e~le~l 435 (437)
T 4b4t_I 373 ----EDVNLETLVTTKDDLSG--ADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEENLEGL 435 (437)
T ss_dssp ----SCCCHHHHHHHCCSCCH--HHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHCCCSSSSC
T ss_pred ----CcCCHHHHHHhCCCCCH--HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCCChhhHHhh
Confidence 11224445544434443 44555666665443 3466789999999999876554444444443
No 8
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.6e-19 Score=170.63 Aligned_cols=217 Identities=18% Similarity=0.261 Sum_probs=148.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.+.|.+++.++|.+.+.-.+.. ..+..+|||||||||||+++++++.++. ..++.+++....+.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~------~~f~~v~~s~l~sk 221 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD------CKFIRVSGAELVQK 221 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT------CEEEEEEGGGGSCS
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC------CCceEEEhHHhhcc
Confidence 35789999999999887764433 3478999999999999999999999876 44577887665432
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----------chhHHHHHHh
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----------KQRLLYSLLD 167 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----------~~~~L~~l~~ 167 (418)
+ + +..+.....+++..+.. .|+||+|||+|.+... .+..+..++.
T Consensus 222 ~--v------------------Gese~~vr~lF~~Ar~~----aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~ 277 (405)
T 4b4t_J 222 Y--I------------------GEGSRMVRELFVMAREH----APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLN 277 (405)
T ss_dssp S--T------------------THHHHHHHHHHHHHHHT----CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHH
T ss_pred c--c------------------chHHHHHHHHHHHHHHh----CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHH
Confidence 1 0 11122233344444433 5899999999999764 1235666666
Q ss_pred hhcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHH
Q 014789 168 AMQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS-LPVDSSLPHAYAVEFNKKI 242 (418)
Q Consensus 168 ~~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~-~~~~~~~~~~~~~~~~~~~ 242 (418)
.... ...+++||++||+. +.+++++.+ ||. +.|.|++++.++..+|++..+. .+..
T Consensus 278 ~lDg~~~~~~V~vIaATNrp---d~LDpAllRpGRfD-~~I~i~lPd~~~R~~Il~~~~~~~~l~--------------- 338 (405)
T 4b4t_J 278 QLDGFETSKNIKIIMATNRL---DILDPALLRPGRID-RKIEFPPPSVAARAEILRIHSRKMNLT--------------- 338 (405)
T ss_dssp HHHTTTCCCCEEEEEEESCS---SSSCHHHHSTTSSC-CEEECCCCCHHHHHHHHHHHHTTSBCC---------------
T ss_pred hhhccCCCCCeEEEeccCCh---hhCCHhHcCCCcCc-eEEEcCCcCHHHHHHHHHHHhcCCCCC---------------
Confidence 5543 34689999999994 467888876 887 6799999999999999988775 1111
Q ss_pred HHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcc-cccCCCCChhhHHHHHhccC
Q 014789 243 KNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYM-DLESGFLSFENFKTALSNSH 299 (418)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a-~~~~~~it~~~v~~a~~~~~ 299 (418)
.+-.+..+++...+++| ..+-.+|..|...| ..+...|+.+||..|++++.
T Consensus 339 ----~dvdl~~lA~~t~G~SG--ADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~ 390 (405)
T 4b4t_J 339 ----RGINLRKVAEKMNGCSG--ADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVM 390 (405)
T ss_dssp ----SSCCHHHHHHHCCSCCH--HHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred ----ccCCHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 11224445544433333 44455666655443 34677899999999987653
No 9
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.82 E-value=1.1e-18 Score=165.15 Aligned_cols=267 Identities=17% Similarity=0.225 Sum_probs=185.5
Q ss_pred CCCCChhhhHHHHHHHHHHHHh-cCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVT-EACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIA 106 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~-~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~ 106 (418)
+.++|++..++.+...+..... +....+++|+||||||||++++.+++.+. ..++.++|........ +
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~------~~~~~~~~~~~~~~~~-~---- 97 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS------ANIKTTAAPMIEKSGD-L---- 97 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT------CCEEEEEGGGCCSHHH-H----
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC------CCeEEecchhccchhH-H----
Confidence 3589999999999999887654 33467899999999999999999988764 3357788865543211 1
Q ss_pred HHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc---------------
Q 014789 107 RQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------------- 171 (418)
Q Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------------- 171 (418)
...+... ..+.+|+|||+|.+....+..|+..++....
T Consensus 98 ------------------------~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3pfi_A 98 ------------------------AAILTNL---SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKI 150 (338)
T ss_dssp ------------------------HHHHHTC---CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCC
T ss_pred ------------------------HHHHHhc---cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceec
Confidence 1112111 2467999999999987777777777654321
Q ss_pred CCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhH
Q 014789 172 VTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRF 251 (418)
Q Consensus 172 ~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (418)
...++.+|++||... .+.+.+.+||. ..+.|+|++.+++.+++...+... + ..++++++
T Consensus 151 ~~~~~~~i~atn~~~---~l~~~L~~R~~-~~i~l~~~~~~e~~~il~~~~~~~---~--------------~~~~~~~~ 209 (338)
T 3pfi_A 151 DLPKFTLIGATTRAG---MLSNPLRDRFG-MQFRLEFYKDSELALILQKAALKL---N--------------KTCEEKAA 209 (338)
T ss_dssp CCCCCEEEEEESCGG---GSCHHHHTTCS-EEEECCCCCHHHHHHHHHHHHHHT---T--------------CEECHHHH
T ss_pred CCCCeEEEEeCCCcc---ccCHHHHhhcC-EEeeCCCcCHHHHHHHHHHHHHhc---C--------------CCCCHHHH
Confidence 011488999999844 47788999985 579999999999999999876410 0 01233333
Q ss_pred HHHHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHHhhhhhhcCC
Q 014789 252 KEIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCLKRLEVKEQN 330 (418)
Q Consensus 252 ~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~~~l~~~~~~ 330 (418)
..++. ...|++|.+.+++..+...+. .+...|+.+++..++...... ..++...++.++.+++.. +..
T Consensus 210 ~~l~~---~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~-----~~~l~~~e~~~l~~l~~~---~~~ 278 (338)
T 3pfi_A 210 LEIAK---RSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN-----ELGFDAMDLRYLELLTAA---KQK 278 (338)
T ss_dssp HHHHH---TTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC-----TTCCCHHHHHHHHHHHHS---CSC
T ss_pred HHHHH---HHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc-----ccCCCHHHHHHHHHHHHh---cCC
Confidence 33333 246999999999998866654 345679999999888764322 235677777788877754 345
Q ss_pred cccHHHHHHHHHHHHhhcCCCCccChhHHHHHHH-HHHhCCcceee
Q 014789 331 SYNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFE-HLLQRELICFT 375 (418)
Q Consensus 331 ~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~-~L~~~~~i~~~ 375 (418)
.++...+ ++..+. +++.+.+.++ +|.+.|+|...
T Consensus 279 ~~~~~~~-------a~~lg~----~~~tl~~~l~~~l~~~gli~~~ 313 (338)
T 3pfi_A 279 PIGLASI-------AAALSE----DENTIEDVIEPYLLANGYIERT 313 (338)
T ss_dssp CBCHHHH-------HHHTTC----CHHHHHHTTHHHHHHTTSEEEE
T ss_pred CchHHHH-------HHHhCC----CHHHHHHHHhHHHHHcCceecC
Confidence 6666666 555543 5555555556 99999998753
No 10
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=4e-19 Score=170.63 Aligned_cols=219 Identities=17% Similarity=0.242 Sum_probs=148.0
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.+.|.+++.++|.+.+...+.. ..+..+|||||||||||+++++++.++. ..++.+++....+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~------~~f~~v~~s~l~~~ 254 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN------ATFLKLAAPQLVQM 254 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEGGGGCSS
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC------CCEEEEehhhhhhc
Confidence 35789999999999887665543 2478999999999999999999999876 44577777654432
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc-----------hhHHHHHHh
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK-----------QRLLYSLLD 167 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~-----------~~~L~~l~~ 167 (418)
+ + +..+.....++...+.. .|+||+|||+|.+...+ +..+..++.
T Consensus 255 ~--v------------------Gese~~ir~lF~~A~~~----aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~ 310 (434)
T 4b4t_M 255 Y--I------------------GEGAKLVRDAFALAKEK----APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLN 310 (434)
T ss_dssp C--S------------------SHHHHHHHHHHHHHHHH----CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHH
T ss_pred c--c------------------chHHHHHHHHHHHHHhc----CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHH
Confidence 0 0 11112233334433332 58999999999997641 234555666
Q ss_pred hhcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHH
Q 014789 168 AMQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS-LPVDSSLPHAYAVEFNKKI 242 (418)
Q Consensus 168 ~~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~-~~~~~~~~~~~~~~~~~~~ 242 (418)
.... ...+++|||+||.. +.+++++.+ ||. +.|+|++++.++..+|++..+. .+.+.
T Consensus 311 ~ldg~~~~~~ViVIaaTNrp---~~LD~AllRpGRfD-~~I~i~lPd~~~R~~Il~~~~~~~~~~~-------------- 372 (434)
T 4b4t_M 311 QLDGFSSDDRVKVLAATNRV---DVLDPALLRSGRLD-RKIEFPLPSEDSRAQILQIHSRKMTTDD-------------- 372 (434)
T ss_dssp HHTTSCSSCSSEEEEECSSC---CCCCTTTCSTTSEE-EEEECCCCCHHHHHHHHHHHHHHSCBCS--------------
T ss_pred HhhccCCCCCEEEEEeCCCc---hhcCHhHhcCCcee-EEEEeCCcCHHHHHHHHHHHhcCCCCCC--------------
Confidence 5543 23578999999994 467889876 886 6799999999999999987764 21111
Q ss_pred HHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcc-cccCCCCChhhHHHHHhccCCC
Q 014789 243 KNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYM-DLESGFLSFENFKTALSNSHRQ 301 (418)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a-~~~~~~it~~~v~~a~~~~~~~ 301 (418)
+-.+..+++...+++| ..+..+|..|...| ..+...|+.+||.+|+..+.+.
T Consensus 373 -----dvdl~~lA~~t~G~sG--ADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 373 -----DINWQELARSTDEFNG--AQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQAR 425 (434)
T ss_dssp -----CCCHHHHHHHCSSCCH--HHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSSS
T ss_pred -----cCCHHHHHHhCCCCCH--HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCC
Confidence 1124444444433333 44555666655443 2366789999999999987654
No 11
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.3e-18 Score=166.55 Aligned_cols=216 Identities=19% Similarity=0.210 Sum_probs=145.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.+.|.+++.++|.+.+.-.+.. ..+..+|||||||||||+++++++.++. ..++.+++....+.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~------~~fi~vs~s~L~sk 282 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD------ATFIRVIGSELVQK 282 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT------CEEEEEEGGGGCCC
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC------CCeEEEEhHHhhcc
Confidence 35889999999999877553322 3588999999999999999999999876 44577777664432
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc-----------hhHHHHHHh
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK-----------QRLLYSLLD 167 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~-----------~~~L~~l~~ 167 (418)
+ + +..+.....++...+.. .|+||+|||+|.+...+ +..+..++.
T Consensus 283 ~--v------------------Gesek~ir~lF~~Ar~~----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~ 338 (467)
T 4b4t_H 283 Y--V------------------GEGARMVRELFEMARTK----KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELIT 338 (467)
T ss_dssp S--S------------------SHHHHHHHHHHHHHHHT----CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHH
T ss_pred c--C------------------CHHHHHHHHHHHHHHhc----CCceEeecccccccccccCcCCCccHHHHHHHHHHHH
Confidence 0 0 11122233344444332 68999999999997641 234555555
Q ss_pred hhcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHH
Q 014789 168 AMQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS-LPVDSSLPHAYAVEFNKKI 242 (418)
Q Consensus 168 ~~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~-~~~~~~~~~~~~~~~~~~~ 242 (418)
.... ...+++||++||+ ++.|++++.+ ||. +.|+|+.++.++..+|++..+. .+.+.
T Consensus 339 ~lDg~~~~~~ViVIaATNr---pd~LDpALlRpGRFD-~~I~i~lPd~~~R~~Ilk~~l~~~~l~~-------------- 400 (467)
T 4b4t_H 339 QLDGFDPRGNIKVMFATNR---PNTLDPALLRPGRID-RKVEFSLPDLEGRANIFRIHSKSMSVER-------------- 400 (467)
T ss_dssp HHHSSCCTTTEEEEEECSC---TTSBCHHHHSTTTCC-EEECCCCCCHHHHHHHHHHHHTTSCBCS--------------
T ss_pred HhhccCCCCcEEEEeCCCC---cccCChhhhcccccc-EEEEeCCcCHHHHHHHHHHHhcCCCCCC--------------
Confidence 4432 3468999999998 4567888876 897 6899999999999999998775 22111
Q ss_pred HHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcc-cccCCCCChhhHHHHHhcc
Q 014789 243 KNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYM-DLESGFLSFENFKTALSNS 298 (418)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a-~~~~~~it~~~v~~a~~~~ 298 (418)
+-.+..+++...+++| ..+..+|..|...| ..+...|+.+||..|++++
T Consensus 401 -----dvdl~~LA~~T~GfSG--ADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 401 -----GIRWELISRLCPNSTG--AELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp -----SCCHHHHHHHCCSCCH--HHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 1123444444333333 44455666655443 2366789999999998765
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.80 E-value=1.7e-18 Score=159.77 Aligned_cols=222 Identities=19% Similarity=0.243 Sum_probs=149.0
Q ss_pred CCccCCCCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccc
Q 014789 23 NFVVKHLSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGL 93 (418)
Q Consensus 23 ~~~~~~~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~ 93 (418)
.+.+ +.++|.+++++.|...+...+.. ..+.+++|+||||||||++++.+++.+. ..+++++|.
T Consensus 13 ~~~~-~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~------~~~~~v~~~ 85 (285)
T 3h4m_A 13 NVRY-EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN------ATFIRVVGS 85 (285)
T ss_dssp CCCG-GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT------CEEEEEEGG
T ss_pred CCCH-HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEehH
Confidence 3444 57899999999999988765444 4678899999999999999999998864 445777775
Q ss_pred cCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----------chhHH
Q 014789 94 LHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----------KQRLL 162 (418)
Q Consensus 94 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----------~~~~L 162 (418)
...... .. ........++..... ..|.||+|||+|.+... .+..+
T Consensus 86 ~~~~~~--~~------------------~~~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l 141 (285)
T 3h4m_A 86 ELVKKF--IG------------------EGASLVKDIFKLAKE----KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTL 141 (285)
T ss_dssp GGCCCS--TT------------------HHHHHHHHHHHHHHH----TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHH
T ss_pred HHHHhc--cc------------------hHHHHHHHHHHHHHH----cCCeEEEEECHHHhcccCccccCCccHHHHHHH
Confidence 543210 00 011122223333332 25789999999999532 45677
Q ss_pred HHHHhhhc--cCCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHH
Q 014789 163 YSLLDAMQ--SVTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEF 238 (418)
Q Consensus 163 ~~l~~~~~--~~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~ 238 (418)
..+++... ....++.+|+++|.. +.+++.+.+ ||. ..+.+++++.++..+|++.++.-. .+
T Consensus 142 ~~ll~~~~~~~~~~~~~vI~ttn~~---~~l~~~l~~~~Rf~-~~i~~~~p~~~~r~~il~~~~~~~---~~-------- 206 (285)
T 3h4m_A 142 MQLLAEMDGFDARGDVKIIGATNRP---DILDPAILRPGRFD-RIIEVPAPDEKGRLEILKIHTRKM---NL-------- 206 (285)
T ss_dssp HHHHHHHHTTCSSSSEEEEEECSCG---GGBCHHHHSTTSEE-EEEECCCCCHHHHHHHHHHHHTTS---CB--------
T ss_pred HHHHHHhhCCCCCCCEEEEEeCCCc---hhcCHHHcCCCcCC-eEEEECCCCHHHHHHHHHHHHhcC---CC--------
Confidence 77776543 234579999999874 557788877 875 578999999999999999987511 01
Q ss_pred HHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccC
Q 014789 239 NKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSH 299 (418)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~ 299 (418)
-.+..+..++....+ ...+.+..++..|...|. .+...|+.+||.+|+..+.
T Consensus 207 -------~~~~~~~~l~~~~~g--~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 207 -------AEDVNLEEIAKMTEG--CVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp -------CTTCCHHHHHHHCTT--CCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred -------CCcCCHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHH
Confidence 012223444443322 245566666666655543 3667899999999988753
No 13
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.80 E-value=3.2e-19 Score=170.87 Aligned_cols=250 Identities=11% Similarity=0.096 Sum_probs=150.8
Q ss_pred CCCCccCCCCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCC---
Q 014789 21 DPNFVVKHLSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHS--- 96 (418)
Q Consensus 21 ~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~--- 96 (418)
.|.+.+ +.++|++...+.+.........+.. +++++|+||||||||++++.+++.+... ..++.++|....
T Consensus 38 ~p~~~~-~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~----~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 38 EPRQAS-QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD----TPFTAIAGSEIFSLE 112 (368)
T ss_dssp CBCSEE-TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS----CCEEEEEGGGGSCSS
T ss_pred CcCcch-hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc----CCcccccchhhhhcc
Confidence 344434 4789999998887766655433332 3699999999999999999999998643 334566654421
Q ss_pred -ChHHHHHHHHHHHH------------------Hhhhc------ccc--cCCChHhHHHHHHHHHh----hcCCCceEEE
Q 014789 97 -DDCCAFKEIARQLC------------------MEHQL------LFS--KMASFDDNSQFMIEMLR----ECGLAHKTII 145 (418)
Q Consensus 97 -~~~~~~~~i~~~l~------------------~~~~~------~~~--~~~~~~~~~~~l~~~l~----~~~~~~~~~v 145 (418)
.....+.+.+.... ..... .+. .+....+..+.+..... .......|.|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 192 (368)
T 3uk6_A 113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV 192 (368)
T ss_dssp SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence 22333333333210 00000 000 00011222222222221 1111122579
Q ss_pred EEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCC--------ChHHHHHHHhhcccCceEEEecCCCHHHHHHH
Q 014789 146 FVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRL--------DADQLLEKRVRSRFSHRKLLFLPPSKEDMQRL 217 (418)
Q Consensus 146 iilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~--------~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~i 217 (418)
|+|||+|.+....++.|+.+++. ...+++++++.+.. +....+++.+.|||. .+.|+||+.+++.++
T Consensus 193 l~IDEi~~l~~~~~~~L~~~le~---~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~--~i~~~~~~~~e~~~i 267 (368)
T 3uk6_A 193 LFIDEVHMLDIESFSFLNRALES---DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLL--IVSTTPYSEKDTKQI 267 (368)
T ss_dssp EEEESGGGSBHHHHHHHHHHTTC---TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEE--EEEECCCCHHHHHHH
T ss_pred EEEhhccccChHHHHHHHHHhhC---cCCCeeeeecccceeeeeccCCCCcccCCHHHHhhcc--EEEecCCCHHHHHHH
Confidence 99999999987666666666544 33455555554211 123456788999994 589999999999999
Q ss_pred HHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHh
Q 014789 218 LEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALS 296 (418)
Q Consensus 218 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~ 296 (418)
++.++... + ..++++++..+++... .|++|.++++|..|...|. .+...|+.+||.+++.
T Consensus 268 l~~~~~~~---~--------------~~~~~~~l~~l~~~~~--~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~ 328 (368)
T 3uk6_A 268 LRIRCEEE---D--------------VEMSEDAYTVLTRIGL--ETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYS 328 (368)
T ss_dssp HHHHHHHT---T--------------CCBCHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHc---C--------------CCCCHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 99987510 0 0123444444443321 2999999999999887764 4667999999999988
Q ss_pred ccC
Q 014789 297 NSH 299 (418)
Q Consensus 297 ~~~ 299 (418)
...
T Consensus 329 ~~~ 331 (368)
T 3uk6_A 329 LFL 331 (368)
T ss_dssp HSB
T ss_pred Hhc
Confidence 643
No 14
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.2e-18 Score=167.47 Aligned_cols=218 Identities=16% Similarity=0.175 Sum_probs=146.5
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.+.|.+++++.|.+.+.-.+.. ..+..+|||||||||||+++++++..+. ..++.+++....+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~------~~~~~v~~s~l~sk 254 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG------ANFIFSPASGIVDK 254 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEGGGTCCS
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEehhhhccc
Confidence 35789999999999988765544 2478999999999999999999999876 44577887665432
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----------chhHHHHHHh
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----------KQRLLYSLLD 167 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----------~~~~L~~l~~ 167 (418)
+ + +........++..... ..|+||+|||+|.+... .+..+..|+.
T Consensus 255 ~--~------------------Gese~~ir~~F~~A~~----~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~ 310 (437)
T 4b4t_L 255 Y--I------------------GESARIIREMFAYAKE----HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLT 310 (437)
T ss_dssp S--S------------------SHHHHHHHHHHHHHHH----SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHH
T ss_pred c--c------------------hHHHHHHHHHHHHHHh----cCCceeeeecccccccccccCCCCcchHHHHHHHHHHH
Confidence 1 0 0111223333333333 26999999999998753 1234556666
Q ss_pred hhcc--CCCcEEEEEeccCCChHHHHHHHhhcc--cCceEEEecCCCHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHHH
Q 014789 168 AMQS--VTSQAVVIGVSCRLDADQLLEKRVRSR--FSHRKLLFLPPSKEDMQRLLEHILS-LPVDSSLPHAYAVEFNKKI 242 (418)
Q Consensus 168 ~~~~--~~~~~~lI~~s~~~~~~~~l~~~v~sr--~~~~~i~~~~~~~~e~~~il~~~l~-~~~~~~~~~~~~~~~~~~~ 242 (418)
.... ...+++||++||. ++.+++++.++ |. +.|+|++++.++..+|++..+. .+..
T Consensus 311 ~lDg~~~~~~vivI~ATNr---p~~LDpAllRpGRfD-~~I~i~lPd~~~R~~Il~~~~~~~~~~--------------- 371 (437)
T 4b4t_L 311 QMDGFDNLGQTKIIMATNR---PDTLDPALLRPGRLD-RKVEIPLPNEAGRLEIFKIHTAKVKKT--------------- 371 (437)
T ss_dssp HHHSSSCTTSSEEEEEESS---TTSSCTTTTSTTSEE-EEECCCCCCHHHHHHHHHHHHHTSCBC---------------
T ss_pred HhhcccCCCCeEEEEecCC---chhhCHHHhCCCccc-eeeecCCcCHHHHHHHHHHHhcCCCCC---------------
Confidence 5543 2357899999998 45688888764 75 6799999999999999988765 1111
Q ss_pred HHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcc-cccCCCCChhhHHHHHhccCC
Q 014789 243 KNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYM-DLESGFLSFENFKTALSNSHR 300 (418)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a-~~~~~~it~~~v~~a~~~~~~ 300 (418)
.+-++..+++...+++ ...+..+|..|...| ..+...|+.+||.+|++.+.+
T Consensus 372 ----~d~dl~~lA~~t~G~s--GADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 372 ----GEFDFEAAVKMSDGFN--GADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAE 424 (437)
T ss_dssp ----SCCCHHHHHHTCCSCC--HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred ----cccCHHHHHHhCCCCC--HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 1122444444333333 344555666655443 346678999999999887543
No 15
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.78 E-value=1.2e-17 Score=147.89 Aligned_cols=207 Identities=17% Similarity=0.151 Sum_probs=141.8
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
+.++|++++++.+...+.. +..++++|+||+|+|||++++.+++.+..... ...++.++|........ +.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~ 90 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVER----KNIPHLLFSGPPGTGKTATAIALARDLFGENW-RDNFIEMNASDERGIDV-VRHKIK 90 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHT----TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGG-GGGEEEEETTCTTCHHH-HHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHHHhcccc-ccceEEeccccccChHH-HHHHHH
Confidence 3589999999988887643 44556999999999999999999998754321 14467778765544321 111111
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhc-CCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLREC-GLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
.+ .... .....+.+|+|||+|.+....+..|..+++.. ..++.+|+++|..
T Consensus 91 ~~------------------------~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~---~~~~~~i~~~~~~- 142 (226)
T 2chg_A 91 EF------------------------ARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY---SKSCRFILSCNYV- 142 (226)
T ss_dssp HH------------------------HTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT---TTTEEEEEEESCG-
T ss_pred HH------------------------hcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc---CCCCeEEEEeCCh-
Confidence 11 1110 01246889999999999876666676666553 3567788888763
Q ss_pred hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHH
Q 014789 187 ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVN 266 (418)
Q Consensus 187 ~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r 266 (418)
..+.+.+.+|+. .+.|+|++.+++.+++..++.- ....++++.+..++. . ..|++|
T Consensus 143 --~~~~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~-----------------~~~~~~~~~~~~l~~-~--~~g~~r 198 (226)
T 2chg_A 143 --SRIIEPIQSRCA--VFRFKPVPKEAMKKRLLEICEK-----------------EGVKITEDGLEALIY-I--SGGDFR 198 (226)
T ss_dssp --GGSCHHHHTTSE--EEECCCCCHHHHHHHHHHHHHH-----------------HTCCBCHHHHHHHHH-H--HTTCHH
T ss_pred --hhcCHHHHHhCc--eeecCCCCHHHHHHHHHHHHHH-----------------cCCCCCHHHHHHHHH-H--cCCCHH
Confidence 456788899984 7899999999999999987630 000123333333332 2 369999
Q ss_pred HHHHHHHHHhhcccccCCCCChhhHHHHHh
Q 014789 267 HLLRFLFLAVSYMDLESGFLSFENFKTALS 296 (418)
Q Consensus 267 ~~~~~l~~a~~~a~~~~~~it~~~v~~a~~ 296 (418)
.+++++..+...+ ..|+.++|.+++.
T Consensus 199 ~l~~~l~~~~~~~----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 199 KAINALQGAAAIG----EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHHTC----SCBCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----ceecHHHHHHHhc
Confidence 9999998876553 5899999998875
No 16
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.3e-18 Score=162.70 Aligned_cols=216 Identities=18% Similarity=0.234 Sum_probs=145.6
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.+.|.+++.+.|.+.+...+.. ..+..+|||||||||||+++++++..+. ..++.+++....+.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~------~~~~~v~~~~l~~~ 245 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK------AAFIRVNGSEFVHK 245 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT------CEEEEEEGGGTCCS
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCeEEEecchhhcc
Confidence 35789999999999988765543 2477899999999999999999999876 45577887664432
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----------chhHHHHHHh
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----------KQRLLYSLLD 167 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----------~~~~L~~l~~ 167 (418)
+ + +........++...+.. .|+||+|||+|.+... .+..+..|+.
T Consensus 246 ~--~------------------Ge~e~~ir~lF~~A~~~----aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~ 301 (428)
T 4b4t_K 246 Y--L------------------GEGPRMVRDVFRLAREN----APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLT 301 (428)
T ss_dssp S--C------------------SHHHHHHHHHHHHHHHT----CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHH
T ss_pred c--c------------------chhHHHHHHHHHHHHHc----CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHH
Confidence 0 0 11112233344444332 5899999999999864 1245666666
Q ss_pred hhcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEec-CCCHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHH
Q 014789 168 AMQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFL-PPSKEDMQRLLEHILS-LPVDSSLPHAYAVEFNKK 241 (418)
Q Consensus 168 ~~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~-~~~~~e~~~il~~~l~-~~~~~~~~~~~~~~~~~~ 241 (418)
+... ...+++||++||.. +.+++++.+ ||. +.|.|+ +++.++...|++..+. .+..
T Consensus 302 ~ldg~~~~~~v~vI~aTN~~---~~LD~AllRpGRfd-~~I~~p~lPd~~~R~~Il~~~~~~~~l~-------------- 363 (428)
T 4b4t_K 302 QMDGFDQSTNVKVIMATNRA---DTLDPALLRPGRLD-RKIEFPSLRDRRERRLIFGTIASKMSLA-------------- 363 (428)
T ss_dssp HHHHSCSSCSEEEEEEESCS---SSCCHHHHSSSSEE-EEEECCSSCCHHHHHHHHHHHHHSSCBC--------------
T ss_pred HhhCCCCCCCEEEEEecCCh---hhcChhhhcCCcce-EEEEcCCCCCHHHHHHHHHHHhcCCCCC--------------
Confidence 5543 34579999999984 467888876 775 578996 6788998899887764 1111
Q ss_pred HHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcc-cccCCCCChhhHHHHHhcc
Q 014789 242 IKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYM-DLESGFLSFENFKTALSNS 298 (418)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a-~~~~~~it~~~v~~a~~~~ 298 (418)
.+-.+..++....+++| ..+..+|..|...| ..+...|+.+|+.+|+...
T Consensus 364 -----~~~dl~~lA~~t~G~sg--adi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 364 -----PEADLDSLIIRNDSLSG--AVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 414 (428)
T ss_dssp -----TTCCHHHHHHHTTTCCH--HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred -----cccCHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHh
Confidence 11224445554444333 44555666655443 3467789999999998754
No 17
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.78 E-value=2.3e-18 Score=161.67 Aligned_cols=162 Identities=19% Similarity=0.253 Sum_probs=113.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcC--------CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEA--------CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~--------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
+.++|.++..+.|...+....... .+.+++|+||||||||++++++++.+. ..+++++|....+.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~------~~~~~v~~~~l~~~- 90 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN------STFFSVSSSDLVSK- 90 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT------CEEEEEEHHHHHTT-
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC------CCEEEEchHHHhhc-
Confidence 468999999999998875443322 357899999999999999999998864 44577777432110
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc-----------hhHHHHHHhh
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK-----------QRLLYSLLDA 168 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~-----------~~~L~~l~~~ 168 (418)
. .+........+++..... .|.||+|||+|.+.... +..+...++.
T Consensus 91 ---------~----------~g~~~~~~~~~f~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~ 147 (322)
T 3eie_A 91 ---------W----------MGESEKLVKQLFAMAREN----KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNG 147 (322)
T ss_dssp ---------T----------GGGHHHHHHHHHHHHHHT----SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGG
T ss_pred ---------c----------cchHHHHHHHHHHHHHhc----CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcc
Confidence 0 011122333344444332 57899999999997632 2333333343
Q ss_pred hccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 169 MQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 169 ~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
......++.||++||. ++.+++.+.+||. ..+.+++++.++..+|++..+.
T Consensus 148 ~~~~~~~v~vi~atn~---~~~ld~al~~Rf~-~~i~~~~p~~~~r~~il~~~~~ 198 (322)
T 3eie_A 148 VGNDSQGVLVLGATNI---PWQLDSAIRRRFE-RRIYIPLPDLAARTTMFEINVG 198 (322)
T ss_dssp GGTSCCCEEEEEEESC---GGGSCHHHHHHCC-EEEECCCCCHHHHHHHHHHHHT
T ss_pred ccccCCceEEEEecCC---hhhCCHHHHcccC-eEEEeCCCCHHHHHHHHHHHhc
Confidence 3334568999999988 4457889999997 5789999999999999999876
No 18
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.77 E-value=9.1e-18 Score=156.71 Aligned_cols=233 Identities=14% Similarity=0.190 Sum_probs=150.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHh----------cCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVT----------EACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD 97 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~----------~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~ 97 (418)
+.++|+++.++.+...+..... ...+.+++|+||||||||++++.+++.+. ..+++++|.....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~------~~~~~i~~~~~~~ 88 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN------APFIKVEATKFTE 88 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT------CCEEEEEGGGGSS
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEcchhccc
Confidence 4689999999999988866321 23577999999999999999999999874 3357788866543
Q ss_pred h-------HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc------------
Q 014789 98 D-------CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK------------ 158 (418)
Q Consensus 98 ~-------~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~------------ 158 (418)
. ...+..+.... .. .+.. .+.+.||+|||+|.+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~-----------~~----------~~~~---~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~ 144 (310)
T 1ofh_A 89 VGYVGKEVDSIIRDLTDSA-----------GG----------AIDA---VEQNGIVFIDEIDKICKKGEYSGADVSREGV 144 (310)
T ss_dssp CCSGGGSTTHHHHHHHHTT-----------TT----------CHHH---HHHHCEEEEECGGGGSCCSSCCSSHHHHHHH
T ss_pred CCccCccHHHHHHHHHHHh-----------hH----------HHhh---ccCCCEEEEEChhhcCccccccccchhHHHH
Confidence 1 11111111100 00 0000 0135799999999998754
Q ss_pred hhHHHHHHhhhc-------cCCCcEEEEEeccCC-ChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCC
Q 014789 159 QRLLYSLLDAMQ-------SVTSQAVVIGVSCRL-DADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSL 230 (418)
Q Consensus 159 ~~~L~~l~~~~~-------~~~~~~~lI~~s~~~-~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~ 230 (418)
+..|..+++... ....++.+|++++.. .-...+++.+.+||. ..+.|+||+.+++.+|++.++.
T Consensus 145 ~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~-~~i~~~~~~~~~~~~il~~~~~------- 216 (310)
T 1ofh_A 145 QRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLP-IRVELTALSAADFERILTEPHA------- 216 (310)
T ss_dssp HHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCC-EEEECCCCCHHHHHHHHHSSTT-------
T ss_pred HHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCC-ceEEcCCcCHHHHHHHHHhhHH-------
Confidence 566666665321 022467888886431 124567889999997 5699999999999999997642
Q ss_pred ChHHHHHHHHHHH--H---HhCChhHHHHHHHHhcc-----ccCHHHHHHHHHHHhhcc-----cc-c-CCCCChhhHHH
Q 014789 231 PHAYAVEFNKKIK--N---ILADGRFKEIVNTLVNL-----DSTVNHLLRFLFLAVSYM-----DL-E-SGFLSFENFKT 293 (418)
Q Consensus 231 ~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~-----~gd~r~~~~~l~~a~~~a-----~~-~-~~~it~~~v~~ 293 (418)
.+...|..... + .++++++..+++..+.. .|++|.+.+++..++..+ .. + ...|+.++|.+
T Consensus 217 --~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~ 294 (310)
T 1ofh_A 217 --SLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVAD 294 (310)
T ss_dssp --CHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHH
T ss_pred --HHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHH
Confidence 12223322221 1 24555555555544332 699999999999876331 11 2 12599999999
Q ss_pred HHhccCC
Q 014789 294 ALSNSHR 300 (418)
Q Consensus 294 a~~~~~~ 300 (418)
++.....
T Consensus 295 ~l~~~~~ 301 (310)
T 1ofh_A 295 ALGEVVE 301 (310)
T ss_dssp HTCSSSS
T ss_pred HHHhhhh
Confidence 9887643
No 19
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.77 E-value=5.8e-17 Score=152.07 Aligned_cols=274 Identities=16% Similarity=0.173 Sum_probs=177.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
+.++|++.+++.+...+ ..+..++++|+||+|+|||++++.+++.+..... ...+++++|...... ..++++..
T Consensus 21 ~~~~g~~~~~~~l~~~l----~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-~~~~~~~~~~~~~~~-~~i~~~~~ 94 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIA----KDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY-ADGVLELNASDDRGI-DVVRNQIK 94 (323)
T ss_dssp GGCCSCTHHHHHHHHHH----HSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH-HHHEEEECTTSCCSH-HHHHTHHH
T ss_pred HHHHCCHHHHHHHHHHH----HcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc-cCCEEEecCccccCh-HHHHHHHH
Confidence 35889999999887775 4445455999999999999999999998754321 144677887654332 22333333
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCC-CceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGL-AHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
.+... .... .+++.||||||+|.+....++.|..+++.+ ..++.+|++++.
T Consensus 95 ~~~~~-----------------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~---~~~~~~il~~~~-- 146 (323)
T 1sxj_B 95 HFAQK-----------------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY---SNSTRFAFACNQ-- 146 (323)
T ss_dssp HHHHB-----------------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT---TTTEEEEEEESC--
T ss_pred HHHhc-----------------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc---CCCceEEEEeCC--
Confidence 22110 0001 234789999999999776555565555543 356778888876
Q ss_pred hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHH
Q 014789 187 ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVN 266 (418)
Q Consensus 187 ~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r 266 (418)
...+.+.+.||+ ..+.|+|++.+++.+++..++.- .+ ..++++++..++.. ..||+|
T Consensus 147 -~~~l~~~l~sr~--~~i~~~~~~~~~~~~~l~~~~~~---~~--------------~~~~~~~~~~l~~~---~~G~~r 203 (323)
T 1sxj_B 147 -SNKIIEPLQSQC--AILRYSKLSDEDVLKRLLQIIKL---ED--------------VKYTNDGLEAIIFT---AEGDMR 203 (323)
T ss_dssp -GGGSCHHHHTTS--EEEECCCCCHHHHHHHHHHHHHH---HT--------------CCBCHHHHHHHHHH---HTTCHH
T ss_pred -hhhchhHHHhhc--eEEeecCCCHHHHHHHHHHHHHH---cC--------------CCCCHHHHHHHHHH---cCCCHH
Confidence 345678899998 47999999999999999987630 00 01233333333332 269999
Q ss_pred HHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHHhh-hhhhcCCcccHHHHHHHHHHHH
Q 014789 267 HLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCLKR-LEVKEQNSYNFNSVMKEYKSIH 345 (418)
Q Consensus 267 ~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~~~-l~~~~~~~~~~~~v~~~y~~~~ 345 (418)
.+++.+..+... ...|+.++|.++..........+.+.. .... .++..+.+ +.. ...+..++...|..++
T Consensus 204 ~a~~~l~~~~~~----~~~i~~~~v~~~~~~~~~~~i~~~~~~-~~~~-~~l~~l~~dl~~---~g~~~~~i~~~l~~~~ 274 (323)
T 1sxj_B 204 QAINNLQSTVAG----HGLVNADNVFKIVDSPHPLIVKKMLLA-SNLE-DSIQILRTDLWK---KGYSSIDIVTTSFRVT 274 (323)
T ss_dssp HHHHHHHHHHHH----HSSBCHHHHHHHHTSCCHHHHHHHHSC-SSHH-HHHHHHHHTTTT---TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCcCHHHHHHHHCCCCHHHHHHHHhc-CCHH-HHHHHHHHHHHH---cCCCHHHHHHHHHHHH
Confidence 999999775422 247999999998877655555666666 3332 23343443 332 3467778888888888
Q ss_pred hhcCCCCccChhHHHHHHHHHHhCC
Q 014789 346 DSFQTSDYYSRNVCLRAFEHLLQRE 370 (418)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~L~~~~ 370 (418)
.... .++...+.++++.|.+..
T Consensus 275 ~~l~---~~~~~~l~~~l~~l~~~~ 296 (323)
T 1sxj_B 275 KNLA---QVKESVRLEMIKEIGLTH 296 (323)
T ss_dssp HTCT---TSCHHHHHHHHHHHHHHH
T ss_pred Hhcc---cCCHHHHHHHHHHHHHHH
Confidence 7642 244444556666665543
No 20
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.76 E-value=1.3e-17 Score=156.88 Aligned_cols=268 Identities=15% Similarity=0.121 Sum_probs=180.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc-CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE-ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIA 106 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~-~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~ 106 (418)
+.++|++..+..+...+...... ..+.+++|+||||||||++++.+++.+. ..+++++|........+.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~------~~~~~~~~~~~~~~~~l~---- 81 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG------VNLRVTSGPAIEKPGDLA---- 81 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT------CCEEEECTTTCCSHHHHH----
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC------CCEEEEeccccCChHHHH----
Confidence 46899999999999988776543 3467899999999999999999998874 234677886654422111
Q ss_pred HHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc---------------
Q 014789 107 RQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------------- 171 (418)
Q Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------------- 171 (418)
..+... ...+.+|+|||+|.+....+..|..+++....
T Consensus 82 -------------------------~~l~~~--~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~ 134 (324)
T 1hqc_A 82 -------------------------AILANS--LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRL 134 (324)
T ss_dssp -------------------------HHHTTT--CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEE
T ss_pred -------------------------HHHHHh--ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhcccccccccccc
Confidence 111110 12456999999999987777777777765321
Q ss_pred CCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhH
Q 014789 172 VTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRF 251 (418)
Q Consensus 172 ~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (418)
...++.+|+++|... .+.+.+.+||. ..+.|+|++.+++.+++...+.... .. ++++.+
T Consensus 135 ~~~~~~~i~~t~~~~---~~~~~l~~R~~-~~i~l~~~~~~e~~~~l~~~~~~~~-~~----------------~~~~~~ 193 (324)
T 1hqc_A 135 ELPRFTLIGATTRPG---LITAPLLSRFG-IVEHLEYYTPEELAQGVMRDARLLG-VR----------------ITEEAA 193 (324)
T ss_dssp ECCCCEEEEEESCCS---SCSCSTTTTCS-CEEECCCCCHHHHHHHHHHHHHTTT-CC----------------CCHHHH
T ss_pred CCCCEEEEEeCCCcc---cCCHHHHhccc-EEEecCCCCHHHHHHHHHHHHHhcC-CC----------------CCHHHH
Confidence 113578999998753 45667888985 5789999999999999998764110 11 233333
Q ss_pred HHHHHHHhccccCHHHHHHHHHHHhhcccc-cCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHHhhhhhhcCC
Q 014789 252 KEIVNTLVNLDSTVNHLLRFLFLAVSYMDL-ESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCLKRLEVKEQN 330 (418)
Q Consensus 252 ~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~-~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~~~l~~~~~~ 330 (418)
..++.. ..|++|.+.+++..+...+.. +...|+.+++..+......+ -..++..++.++.++.... +..
T Consensus 194 ~~l~~~---~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~-----~~~l~~~e~~~i~~~~~~~--~g~ 263 (324)
T 1hqc_A 194 LEIGRR---SRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD-----ELGLEKRDREILEVLILRF--GGG 263 (324)
T ss_dssp HHHHHH---SCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCC-----TTCCCHHHHHHHHHHHHHS--CSS
T ss_pred HHHHHH---ccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccc-----ccCCCHHHHHHHHHHHHHh--cCC
Confidence 333332 369999999999988766542 55689999998887664322 2467788887777665421 234
Q ss_pred cccHHHHHHHHHHHHhhcCCCCccChhHHHH-HHHHHHhCCccee
Q 014789 331 SYNFNSVMKEYKSIHDSFQTSDYYSRNVCLR-AFEHLLQRELICF 374 (418)
Q Consensus 331 ~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~-~~~~L~~~~~i~~ 374 (418)
+++...+ ++..|. ++..+.+ +-.++.+.|++..
T Consensus 264 ~~~~~~~-------a~~lgi----~~~tl~~~l~~~~i~~~li~~ 297 (324)
T 1hqc_A 264 PVGLATL-------ATALSE----DPGTLEEVHEPYLIRQGLLKR 297 (324)
T ss_dssp CCCHHHH-------HHHTTS----CHHHHHHHTHHHHHHTTSEEE
T ss_pred CchHHHH-------HHHhCC----CHHHHHHHHhHHHHHhcchhc
Confidence 4555554 555543 4444333 5556888998864
No 21
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.75 E-value=3.2e-17 Score=154.11 Aligned_cols=209 Identities=19% Similarity=0.201 Sum_probs=135.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
+.++|+++.++.+...+. .+..++.++++||||||||++++.+++.+. ..++++||.... ...++....
T Consensus 26 ~~ivg~~~~~~~l~~~l~---~~~~~~~~L~~G~~G~GKT~la~~la~~l~------~~~~~i~~~~~~--~~~i~~~~~ 94 (324)
T 3u61_B 26 DECILPAFDKETFKSITS---KGKIPHIILHSPSPGTGKTTVAKALCHDVN------ADMMFVNGSDCK--IDFVRGPLT 94 (324)
T ss_dssp TTSCCCHHHHHHHHHHHH---TTCCCSEEEECSSTTSSHHHHHHHHHHHTT------EEEEEEETTTCC--HHHHHTHHH
T ss_pred HHHhCcHHHHHHHHHHHH---cCCCCeEEEeeCcCCCCHHHHHHHHHHHhC------CCEEEEcccccC--HHHHHHHHH
Confidence 368899999888887765 233356677888899999999999998874 567889986543 222332222
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhh-hcchhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFA-QGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~-~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
.. .......+.+.||+|||+|.+. ...++.|..+++.+. .++.+|+++|..
T Consensus 95 ~~------------------------~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~---~~~~iI~~~n~~- 146 (324)
T 3u61_B 95 NF------------------------ASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS---SNCSIIITANNI- 146 (324)
T ss_dssp HH------------------------HHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG---GGCEEEEEESSG-
T ss_pred HH------------------------HhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCC---CCcEEEEEeCCc-
Confidence 21 1111223468999999999998 667777777776543 567888899874
Q ss_pred hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCC-hhHHHHHHHHhccccCH
Q 014789 187 ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILAD-GRFKEIVNTLVNLDSTV 265 (418)
Q Consensus 187 ~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gd~ 265 (418)
..+.+++.||| ..+.|+|++.+++.+|+...+. .+..+.....-.+++ +++..++.. ..||+
T Consensus 147 --~~l~~~l~sR~--~~i~~~~~~~~e~~~il~~~~~----------~l~~~~~~~~~~~~~~~~~~~l~~~---~~gd~ 209 (324)
T 3u61_B 147 --DGIIKPLQSRC--RVITFGQPTDEDKIEMMKQMIR----------RLTEICKHEGIAIADMKVVAALVKK---NFPDF 209 (324)
T ss_dssp --GGSCTTHHHHS--EEEECCCCCHHHHHHHHHHHHH----------HHHHHHHHHTCCBSCHHHHHHHHHH---TCSCT
T ss_pred --cccCHHHHhhC--cEEEeCCCCHHHHHHHHHHHHH----------HHHHHHHHcCCCCCcHHHHHHHHHh---CCCCH
Confidence 36788999999 5799999999998777766543 011111111112345 444444432 46999
Q ss_pred HHHHHHHHHHhhcccccCCCCChhhHHHHHhc
Q 014789 266 NHLLRFLFLAVSYMDLESGFLSFENFKTALSN 297 (418)
Q Consensus 266 r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~ 297 (418)
|.+++.+..+. ....|+.+++.++...
T Consensus 210 R~a~~~L~~~~-----~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 210 RKTIGELDSYS-----SKGVLDAGILSLVTND 236 (324)
T ss_dssp THHHHHHHHHG-----GGTCBCC---------
T ss_pred HHHHHHHHHHh-----ccCCCCHHHHHHHhCC
Confidence 99999998865 2345888888876544
No 22
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.75 E-value=3e-17 Score=155.91 Aligned_cols=162 Identities=19% Similarity=0.258 Sum_probs=109.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc--------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE--------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~--------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
+.++|.+...+.|...+...+.. ..+.+++|+||||||||++++++++.+. ..++.++|......
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~------~~~~~v~~~~l~~~- 123 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN------STFFSVSSSDLVSK- 123 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT------CEEEEEEHHHHHSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC------CCEEEeeHHHHhhh-
Confidence 46899999999999887544332 2356899999999999999999999874 34577776432110
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc-----------hhHHHHHHhh
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK-----------QRLLYSLLDA 168 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~-----------~~~L~~l~~~ 168 (418)
. .+........++..... ..+.||+|||+|.+.... +..|...++.
T Consensus 124 ---------~----------~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~ 180 (355)
T 2qp9_X 124 ---------W----------MGESEKLVKQLFAMARE----NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNG 180 (355)
T ss_dssp ---------C-------------CHHHHHHHHHHHHH----TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHH
T ss_pred ---------h----------cchHHHHHHHHHHHHHH----cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhc
Confidence 0 00112223333433333 257899999999997531 2233333333
Q ss_pred hccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 169 MQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 169 ~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
......++.||++||. ++.+++.+.+||. ..+.+++++.++..+|++.++.
T Consensus 181 ~~~~~~~v~vI~atn~---~~~ld~al~rRf~-~~i~i~~P~~~~r~~il~~~l~ 231 (355)
T 2qp9_X 181 VGNDSQGVLVLGATNI---PWQLDSAIRRRFE-RRIYIPLPDLAARTTMFEINVG 231 (355)
T ss_dssp CC---CCEEEEEEESC---GGGSCHHHHHTCC-EEEECCCCCHHHHHHHHHHHHT
T ss_pred ccccCCCeEEEeecCC---cccCCHHHHcccC-EEEEeCCcCHHHHHHHHHHHHh
Confidence 3233467999999998 4467788999996 5789999999999999999875
No 23
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.75 E-value=2.8e-17 Score=161.49 Aligned_cols=132 Identities=8% Similarity=0.062 Sum_probs=91.5
Q ss_pred EEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEe---------ccCCChHHHHHHHhhcccCceEEEecCCCHHH
Q 014789 143 TIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGV---------SCRLDADQLLEKRVRSRFSHRKLLFLPPSKED 213 (418)
Q Consensus 143 ~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~---------s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e 213 (418)
|.|++|||+|.|....++.|+..++. ...++.++++ ++....+..+.+.++|||. .++|+||+.++
T Consensus 296 ~~VliIDEa~~l~~~a~~aLlk~lEe---~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~--~~~~~~~~~~e 370 (456)
T 2c9o_A 296 PGVLFVDEVHMLDIECFTYLHRALES---SIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVM--IIRTMLYTPQE 370 (456)
T ss_dssp ECEEEEESGGGCBHHHHHHHHHHTTS---TTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEE--EEECCCCCHHH
T ss_pred ceEEEEechhhcCHHHHHHHHHHhhc---cCCCEEEEecCCccccccccccccccccCChhHHhhcc--eeeCCCCCHHH
Confidence 46999999999977555666555443 3355544454 4323335577889999994 57999999999
Q ss_pred HHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHH
Q 014789 214 MQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFK 292 (418)
Q Consensus 214 ~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~ 292 (418)
+.++|+.++... ...++++++. .+...+ ..|++|.++.++..|...|. .+...|+.+||.
T Consensus 371 ~~~iL~~~~~~~-----------------~~~~~~~~~~-~i~~~a-~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~ 431 (456)
T 2c9o_A 371 MKQIIKIRAQTE-----------------GINISEEALN-HLGEIG-TKTTLRYSVQLLTPANLLAKINGKDSIEKEHVE 431 (456)
T ss_dssp HHHHHHHHHHHH-----------------TCCBCHHHHH-HHHHHH-HHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHH
T ss_pred HHHHHHHHHHHh-----------------CCCCCHHHHH-HHHHHc-cCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHH
Confidence 999999986400 0012333333 333332 14999999999999877764 367799999999
Q ss_pred HHHhcc
Q 014789 293 TALSNS 298 (418)
Q Consensus 293 ~a~~~~ 298 (418)
+|....
T Consensus 432 ~~~~~~ 437 (456)
T 2c9o_A 432 EISELF 437 (456)
T ss_dssp HHHHHS
T ss_pred HHHHHh
Confidence 998765
No 24
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.75 E-value=3.7e-17 Score=159.30 Aligned_cols=213 Identities=17% Similarity=0.203 Sum_probs=140.0
Q ss_pred CCCCChhhhH---HHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHH
Q 014789 28 HLSDSPDSNY---SKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKE 104 (418)
Q Consensus 28 ~~l~gr~~e~---~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~ 104 (418)
+.++|.+..+ ..|...+ ..+..++++|+||||||||++++.+++.+. ..++.+++..... ..++.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i----~~~~~~~vLL~GppGtGKTtlAr~ia~~~~------~~f~~l~a~~~~~--~~ir~ 93 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAI----EAGHLHSMILWGPPGTGKTTLAEVIARYAN------ADVERISAVTSGV--KEIRE 93 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHH----HHTCCCEEEEECSTTSSHHHHHHHHHHHTT------CEEEEEETTTCCH--HHHHH
T ss_pred HHhCCcHHHHhchHHHHHHH----HcCCCcEEEEECCCCCcHHHHHHHHHHHhC------CCeEEEEeccCCH--HHHHH
Confidence 3588998887 5555554 445668999999999999999999998874 3457777654331 12333
Q ss_pred HHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 105 IARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 105 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
+....... .. .+.+.||||||+|.+....|+.|...++. ..+.+|++|+.
T Consensus 94 ~~~~a~~~---------------------~~----~~~~~iLfIDEI~~l~~~~q~~LL~~le~-----~~v~lI~att~ 143 (447)
T 3pvs_A 94 AIERARQN---------------------RN----AGRRTILFVDEVHRFNKSQQDAFLPHIED-----GTITFIGATTE 143 (447)
T ss_dssp HHHHHHHH---------------------HH----TTCCEEEEEETTTCC------CCHHHHHT-----TSCEEEEEESS
T ss_pred HHHHHHHh---------------------hh----cCCCcEEEEeChhhhCHHHHHHHHHHHhc-----CceEEEecCCC
Confidence 33222110 11 13578999999999987767666666653 56788888765
Q ss_pred CChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccC
Q 014789 185 LDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDST 264 (418)
Q Consensus 185 ~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd 264 (418)
.. ...+.+.+.||+ ..+.|.|++.+++.+++..++..... ++.. ....++++++..++. . ..||
T Consensus 144 n~-~~~l~~aL~sR~--~v~~l~~l~~edi~~il~~~l~~~~~-~~~~---------~~~~i~~~al~~L~~-~--~~Gd 207 (447)
T 3pvs_A 144 NP-SFELNSALLSRA--RVYLLKSLSTEDIEQVLTQAMEDKTR-GYGG---------QDIVLPDETRRAIAE-L--VNGD 207 (447)
T ss_dssp CG-GGSSCHHHHTTE--EEEECCCCCHHHHHHHHHHHHHCTTT-SSTT---------SSEECCHHHHHHHHH-H--HCSC
T ss_pred Cc-ccccCHHHhCce--eEEeeCCcCHHHHHHHHHHHHHHHhh-hhcc---------ccCcCCHHHHHHHHH-H--CCCC
Confidence 33 345678999998 57889999999999999999862110 0000 000123343333333 3 3699
Q ss_pred HHHHHHHHHHHhhccc-c--cCCCCChhhHHHHHhcc
Q 014789 265 VNHLLRFLFLAVSYMD-L--ESGFLSFENFKTALSNS 298 (418)
Q Consensus 265 ~r~~~~~l~~a~~~a~-~--~~~~it~~~v~~a~~~~ 298 (418)
+|.+++++..++..+. . +...||.++|.+++...
T Consensus 208 ~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 208 ARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 9999999999887764 2 34579999999998765
No 25
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.75 E-value=1.4e-16 Score=150.21 Aligned_cols=271 Identities=17% Similarity=0.238 Sum_probs=177.2
Q ss_pred CCCChhhhHHHHHHHHHHHHh-cCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVT-EACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~-~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
.++|.+..++.+...+..... +..+.+++|+||||+||||+++.++..+... +...++........ +..
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~------~~~~sg~~~~~~~~-l~~--- 95 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN------IHVTSGPVLVKQGD-MAA--- 95 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC------EEEEETTTCCSHHH-HHH---
T ss_pred HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC------EEEEechHhcCHHH-HHH---
Confidence 567888888888888766533 2345789999999999999999999987532 23344433322111 110
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc---------------C
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS---------------V 172 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~---------------~ 172 (418)
.+... ....|++|||++.+....++.|+..++.... .
T Consensus 96 -------------------------~~~~~---~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~ 147 (334)
T 1in4_A 96 -------------------------ILTSL---ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRID 147 (334)
T ss_dssp -------------------------HHHHC---CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC--------------
T ss_pred -------------------------HHHHc---cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCccccccccc
Confidence 01111 1235899999999976566777665543210 0
Q ss_pred CCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHH
Q 014789 173 TSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFK 252 (418)
Q Consensus 173 ~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (418)
-.++.++++++. ...+.+.+++||. ..+.|.|++.+++.++++.+.... +. .++++++.
T Consensus 148 l~~~~li~at~~---~~~Ls~~l~sR~~-l~~~Ld~~~~~~l~~iL~~~~~~~---~~--------------~~~~~~~~ 206 (334)
T 1in4_A 148 IQPFTLVGATTR---SGLLSSPLRSRFG-IILELDFYTVKELKEIIKRAASLM---DV--------------EIEDAAAE 206 (334)
T ss_dssp -CCCEEEEEESC---GGGSCHHHHTTCS-EEEECCCCCHHHHHHHHHHHHHHT---TC--------------CBCHHHHH
T ss_pred CCCeEEEEecCC---cccCCHHHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHc---CC--------------CcCHHHHH
Confidence 124678887776 3467889999996 458899999999999999875310 00 12333333
Q ss_pred HHHHHHhccccCHHHHHHHHHHHhhcccc-cCCCCChhhHHHHHhccCCCchhhhhcCCChHHHHHHHHHhhhhhhcCCc
Q 014789 253 EIVNTLVNLDSTVNHLLRFLFLAVSYMDL-ESGFLSFENFKTALSNSHRQPKLECIKDCSILELYILVCLKRLEVKEQNS 331 (418)
Q Consensus 253 ~~~~~~~~~~gd~r~~~~~l~~a~~~a~~-~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~~~~iL~a~~~l~~~~~~~ 331 (418)
.++. ...|++|.++.++..+...|.. +...||.+++.+|+.....+. .+++.+++.+|.++...- +..+
T Consensus 207 ~ia~---~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~~-----~~l~~~~~~~l~~~~~~~--~~~~ 276 (334)
T 1in4_A 207 MIAK---RSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDD-----EGLDEFDRKILKTIIEIY--RGGP 276 (334)
T ss_dssp HHHH---TSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCCT-----TCCCHHHHHHHHHHHHHS--TTCC
T ss_pred HHHH---hcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCc-----CCCCHHHHHHHHHHHHHh--CCCc
Confidence 3333 2469999999999988776643 566899999999998865432 488888888988877532 2345
Q ss_pred ccHHHHHHHHHHHHhhcCCCCccChhHHHHHHH-HHHhCCcceeecCCCC
Q 014789 332 YNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFE-HLLQRELICFTDNRGY 380 (418)
Q Consensus 332 ~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~-~L~~~~~i~~~~~~g~ 380 (418)
+... .+|...+..+ ..+.+.++ +|..+|+|... .+|+
T Consensus 277 ~~~~-------~l~~~~~~~~----~t~~~~~~~~l~~~g~i~~~-~~gr 314 (334)
T 1in4_A 277 VGLN-------ALAASLGVEA----DTLSEVYEPYLLQAGFLART-PRGR 314 (334)
T ss_dssp BCHH-------HHHHHHTSCH----HHHHHHTHHHHHHTTSEEEE-TTEE
T ss_pred chHH-------HHHHHhCCCc----chHHHHHHHHHHHcCCeecc-cccH
Confidence 5544 4466555432 22334555 89999998753 4454
No 26
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.74 E-value=1.8e-16 Score=144.30 Aligned_cols=217 Identities=16% Similarity=0.199 Sum_probs=133.2
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.++|.++..+.|.+.+.. +.. ..+.+++|+||||||||++++.+++.+. ..+++++|......
T Consensus 6 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~------~~~~~~~~~~~~~~ 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ------VPFLAMAGAEFVEV 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT------CCEEEEETTTTSSS
T ss_pred HHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEechHHHHhh
Confidence 4689999999999887765 332 3467899999999999999999998874 33577887664331
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc------------chhHHHHHH
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG------------KQRLLYSLL 166 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~------------~~~~L~~l~ 166 (418)
.. .........+++.... ..+.||+|||+|.+... .+..+..++
T Consensus 79 ~~--------------------~~~~~~~~~~~~~a~~----~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll 134 (262)
T 2qz4_A 79 IG--------------------GLGAARVRSLFKEARA----RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLL 134 (262)
T ss_dssp ST--------------------THHHHHHHHHHHHHHH----TCSEEEEEECC-------------------CHHHHHHH
T ss_pred cc--------------------ChhHHHHHHHHHHHHh----cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHH
Confidence 10 0001111222222222 24789999999999532 345666776
Q ss_pred hhhcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHH
Q 014789 167 DAMQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS-LPVDSSLPHAYAVEFNKK 241 (418)
Q Consensus 167 ~~~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~-~~~~~~~~~~~~~~~~~~ 241 (418)
..... ...++.+|+++|.. +.+++.+.+ ||. ..+.+++++.++..+|++..+. .... .
T Consensus 135 ~~~~~~~~~~~~~vi~~tn~~---~~ld~~l~~~~R~~-~~i~i~~p~~~~r~~il~~~~~~~~~~--~----------- 197 (262)
T 2qz4_A 135 VEMDGMGTTDHVIVLASTNRA---DILDGALMRPGRLD-RHVFIDLPTLQERREIFEQHLKSLKLT--Q----------- 197 (262)
T ss_dssp HHHHTCCTTCCEEEEEEESCG---GGGGSGGGSTTSCC-EEEECCSCCHHHHHHHHHHHHHHTTCC--B-----------
T ss_pred HHhhCcCCCCCEEEEecCCCh---hhcCHHHhcCCcCC-eEEEeCCcCHHHHHHHHHHHHHhCCCC--c-----------
Confidence 65443 23578999999874 456788887 886 5789999999999999998875 1100 0
Q ss_pred HHHHhCChh-HHHHHHHHhccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccC
Q 014789 242 IKNILADGR-FKEIVNTLVNLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSH 299 (418)
Q Consensus 242 ~~~~~~~~~-~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~ 299 (418)
+.+. ...+.....+ -..+.+..++..|...+. .+...|+.+|+..|+..+.
T Consensus 198 -----~~~~~~~~l~~~~~g--~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~ 250 (262)
T 2qz4_A 198 -----SSTFYSQRLAELTPG--FSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVL 250 (262)
T ss_dssp -----THHHHHHHHHHTCTT--CCHHHHHHHHHHHHTC--------CCBCCHHHHHHHHH
T ss_pred -----chhhHHHHHHHHCCC--CCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhc
Confidence 0010 1122222111 234567777777766654 3567899999999988754
No 27
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.74 E-value=3.5e-17 Score=152.80 Aligned_cols=204 Identities=14% Similarity=0.036 Sum_probs=133.8
Q ss_pred CCCChhhhHHHHHHHHHHHHh-----------cCCCceEEEECCCCCchHHHHHHHHHHHhhhCC-CCeEEEEEccccCC
Q 014789 29 LSDSPDSNYSKLKFLVSSSVT-----------EACNNSILLLGPRGSGKIAVLELILTDLLLEYP-DTISVIKLNGLLHS 96 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~-----------~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~-~~~~~v~in~~~~~ 96 (418)
.++|.++..+.|.+.+..... ...+.+++|+||||||||++++.+++.+..... ....+++++|....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 589999999999988765431 345678999999999999999999999876431 12356778775543
Q ss_pred ChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc------chhHHHHHHhhhc
Q 014789 97 DDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG------KQRLLYSLLDAMQ 170 (418)
Q Consensus 97 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~------~~~~L~~l~~~~~ 170 (418)
... +. ... ..+...+... .+.||+|||+|.+... ....+..|++..+
T Consensus 112 ~~~--~g------------------~~~---~~~~~~~~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~ 164 (309)
T 3syl_A 112 GQY--IG------------------HTA---PKTKEVLKRA----MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME 164 (309)
T ss_dssp CSS--TT------------------CHH---HHHHHHHHHH----TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHH
T ss_pred hhc--cc------------------ccH---HHHHHHHHhc----CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHh
Confidence 210 00 001 1112222222 2359999999998532 3345555555555
Q ss_pred cCCCcEEEEEeccCCChH--HHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCC
Q 014789 171 SVTSQAVVIGVSCRLDAD--QLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILAD 248 (418)
Q Consensus 171 ~~~~~~~lI~~s~~~~~~--~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (418)
....++.+|+++|..... ..+++.+.|||. ..+.|+||+.+++.+|++.++.-. +. .+++
T Consensus 165 ~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~~~~~~il~~~l~~~---~~--------------~~~~ 226 (309)
T 3syl_A 165 NNRDDLVVILAGYADRMENFFQSNPGFRSRIA-HHIEFPDYSDEELFEIAGHMLDDQ---NY--------------QMTP 226 (309)
T ss_dssp HCTTTCEEEEEECHHHHHHHHHHSTTHHHHEE-EEEEECCCCHHHHHHHHHHHHHHT---TC--------------EECH
T ss_pred cCCCCEEEEEeCChHHHHHHHhhCHHHHHhCC-eEEEcCCcCHHHHHHHHHHHHHHc---CC--------------CCCH
Confidence 555678899998864322 234689999996 679999999999999999987510 00 1233
Q ss_pred hhHHHHHHHHh-----ccccCHHHHHHHHHHHhh
Q 014789 249 GRFKEIVNTLV-----NLDSTVNHLLRFLFLAVS 277 (418)
Q Consensus 249 ~~~~~~~~~~~-----~~~gd~r~~~~~l~~a~~ 277 (418)
+.+..+...+. ...||+|.+.+++..++.
T Consensus 227 ~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 227 EAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 33333333322 346899999999988764
No 28
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.73 E-value=4.1e-17 Score=146.38 Aligned_cols=225 Identities=14% Similarity=0.166 Sum_probs=136.7
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++||+++++.|...+.. +..++.++|+||+|+|||++++.+++.+...... ....|..... ...+...
T Consensus 24 ~~~g~~~~~~~l~~~l~~---~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~----~~~~~~~~~~----~~~~~~~ 92 (250)
T 1njg_A 24 DVVGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI----TATPCGVCDN----CREIEQG 92 (250)
T ss_dssp GCCSCHHHHHHHHHHHHH---TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCS----CSSCCSCSHH----HHHHHTT
T ss_pred HHhCcHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC----CCCCCcccHH----HHHHhcc
Confidence 589999999999888754 2335679999999999999999999888654311 1111211110 1111000
Q ss_pred HHHhhhccccc-CCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCCh
Q 014789 109 LCMEHQLLFSK-MASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDA 187 (418)
Q Consensus 109 l~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~ 187 (418)
..... ..... .....+....+.+.+......+.+.+|+|||+|.+....+..|..+++. ...++.+|++++..
T Consensus 93 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~---~~~~~~~i~~t~~~-- 166 (250)
T 1njg_A 93 RFVDL-IEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE---PPEHVKFLLATTDP-- 166 (250)
T ss_dssp CCSSE-EEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHS---CCTTEEEEEEESCG--
T ss_pred CCcce-EEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhc---CCCceEEEEEeCCh--
Confidence 00000 00000 0011111222222222222344689999999999876555555554443 34577888888763
Q ss_pred HHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHH
Q 014789 188 DQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNH 267 (418)
Q Consensus 188 ~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~ 267 (418)
..+.+.+.+|+ ..+.|+|++.+++.+++..++.-. +. .++++.+..+++. ..|++|.
T Consensus 167 -~~~~~~l~~r~--~~i~l~~l~~~e~~~~l~~~~~~~---~~--------------~~~~~~~~~l~~~---~~G~~~~ 223 (250)
T 1njg_A 167 -QKLPVTILSRC--LQFHLKALDVEQIRHQLEHILNEE---HI--------------AHEPRALQLLARA---AEGSLRD 223 (250)
T ss_dssp -GGSCHHHHTTS--EEEECCCCCHHHHHHHHHHHHHHT---TC--------------CBCHHHHHHHHHH---HTTCHHH
T ss_pred -HhCCHHHHHHh--hhccCCCCCHHHHHHHHHHHHHhc---CC--------------CCCHHHHHHHHHH---cCCCHHH
Confidence 34566778886 679999999999999999887410 00 1223333333332 2699999
Q ss_pred HHHHHHHHhhcccccCCCCChhhHHHHHh
Q 014789 268 LLRFLFLAVSYMDLESGFLSFENFKTALS 296 (418)
Q Consensus 268 ~~~~l~~a~~~a~~~~~~it~~~v~~a~~ 296 (418)
+.+++..++.. +...|+.++|.+++.
T Consensus 224 ~~~~~~~~~~~---~~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 224 ALSLTDQAIAS---GDGQVSTQAVSAMLG 249 (250)
T ss_dssp HHHHHHHHHTT---TTSSBCHHHHHHHSC
T ss_pred HHHHHHHHHhc---cCceecHHHHHHHhC
Confidence 99999988655 334899999988763
No 29
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.73 E-value=1e-16 Score=150.11 Aligned_cols=163 Identities=19% Similarity=0.266 Sum_probs=113.7
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc--------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE--------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~--------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
+.+.|.++..+.|.+.+...+.. ..+.+++|+||||||||++++++++.+.. ..++.++|.......
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-----~~~~~i~~~~l~~~~ 86 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-----STFFSISSSDLVSKW 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-----CEEEEEECCSSCCSS
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-----CcEEEEEhHHHHhhh
Confidence 46899999999999887654332 23578999999999999999999998732 446777876543210
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc--------hhHHHHHHhhhcc
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK--------QRLLYSLLDAMQS 171 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~--------~~~L~~l~~~~~~ 171 (418)
.+........+++.... ..|.||+|||+|.+.... ..++..++.....
T Consensus 87 --------------------~g~~~~~~~~lf~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~ 142 (322)
T 1xwi_A 87 --------------------LGESEKLVKNLFQLARE----NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG 142 (322)
T ss_dssp --------------------CCSCHHHHHHHHHHHHH----TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHC
T ss_pred --------------------hhHHHHHHHHHHHHHHh----cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhc
Confidence 01112223333433333 257899999999996541 1233444433322
Q ss_pred ---CCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 172 ---VTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 172 ---~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
...++.+|++||.. +.+++.+.+||. ..+.+++++.++..+|++..+.
T Consensus 143 ~~~~~~~v~vI~atn~~---~~ld~al~rRf~-~~i~i~~P~~~~r~~il~~~l~ 193 (322)
T 1xwi_A 143 VGVDNDGILVLGATNIP---WVLDSAIRRRFE-KRIYIPLPEPHARAAMFKLHLG 193 (322)
T ss_dssp SSSCCTTEEEEEEESCT---TTSCHHHHHTCC-EEEECCCCCHHHHHHHHHHHHT
T ss_pred ccccCCCEEEEEecCCc---ccCCHHHHhhcC-eEEEeCCcCHHHHHHHHHHHHh
Confidence 34689999999985 457788999996 5789999999999999999875
No 30
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.73 E-value=1.3e-16 Score=155.76 Aligned_cols=233 Identities=15% Similarity=0.256 Sum_probs=149.9
Q ss_pred hhcCCCCccCCCCCChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCC
Q 014789 18 RLCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHS 96 (418)
Q Consensus 18 ~~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~ 96 (418)
..++|.+.+++.+.|.+.+. . ...+........ +++++|+||||+|||++++.+++.+....+. ..+++++|...
T Consensus 96 ~~l~~~~tfd~fv~g~~n~~-a-~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~-~~v~~v~~~~~- 171 (440)
T 2z4s_A 96 TPLNPDYTFENFVVGPGNSF-A-YHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPD-LRVMYITSEKF- 171 (440)
T ss_dssp CCCCTTCSGGGCCCCTTTHH-H-HHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCS-SCEEEEEHHHH-
T ss_pred cCCCCCCChhhcCCCCchHH-H-HHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCC-CeEEEeeHHHH-
Confidence 45777887754445766654 2 233444444433 6899999999999999999999988766422 56678877442
Q ss_pred ChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhh--cchhHHHHHHhhhccCCC
Q 014789 97 DDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQ--GKQRLLYSLLDAMQSVTS 174 (418)
Q Consensus 97 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~--~~~~~L~~l~~~~~~~~~ 174 (418)
..++...+... . ...+...+. ..+.||+|||+|.+.. ..|..++.+++..... .
T Consensus 172 -----~~~~~~~~~~~---------~----~~~~~~~~~-----~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~-~ 227 (440)
T 2z4s_A 172 -----LNDLVDSMKEG---------K----LNEFREKYR-----KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDS-G 227 (440)
T ss_dssp -----HHHHHHHHHTT---------C----HHHHHHHHT-----TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTT-T
T ss_pred -----HHHHHHHHHcc---------c----HHHHHHHhc-----CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHC-C
Confidence 23333333111 1 111222222 1366999999999987 3567777777654332 3
Q ss_pred cEEEEEeccCCChHHHHHHHhhcccC-ceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH-HhCChhHH
Q 014789 175 QAVVIGVSCRLDADQLLEKRVRSRFS-HRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKN-ILADGRFK 252 (418)
Q Consensus 175 ~~~lI~~s~~~~~~~~l~~~v~sr~~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 252 (418)
..++|++.+.......+++++.|||. ...+.++|++.+++.+|+..++.. .+ .++++.+.
T Consensus 228 ~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~------------------~~~~i~~e~l~ 289 (440)
T 2z4s_A 228 KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEI------------------EHGELPEEVLN 289 (440)
T ss_dssp CEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH------------------HTCCCCTTHHH
T ss_pred CeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH------------------cCCCCCHHHHH
Confidence 34444444332222236788999984 246889999999999999988640 11 13444444
Q ss_pred HHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccC
Q 014789 253 EIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSH 299 (418)
Q Consensus 253 ~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~ 299 (418)
.++. . ..||+|.+..++..+...+......|+.+++.+++....
T Consensus 290 ~la~-~--~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 290 FVAE-N--VDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHH-H--CCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTTT
T ss_pred HHHH-h--cCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 4333 2 369999999999998877654445799999999988765
No 31
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.72 E-value=3.6e-17 Score=146.72 Aligned_cols=197 Identities=13% Similarity=0.112 Sum_probs=128.9
Q ss_pred HHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCC
Q 014789 42 FLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMA 121 (418)
Q Consensus 42 ~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 121 (418)
..+......+.+.+++|+||||||||++++.+++.+.... ..+++++|...... +.
T Consensus 41 ~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~---~~~~~~~~~~~~~~---~~------------------ 96 (242)
T 3bos_A 41 GALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELE---RRSFYIPLGIHASI---ST------------------ 96 (242)
T ss_dssp HHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEEGGGGGGS---CG------------------
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEHHHHHHH---HH------------------
Confidence 3444545555688999999999999999999999887653 55677776443211 00
Q ss_pred ChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc--hhHHHHHHhhhccCCCcEEEEEeccCCC-hHHHHHHHhhcc
Q 014789 122 SFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK--QRLLYSLLDAMQSVTSQAVVIGVSCRLD-ADQLLEKRVRSR 198 (418)
Q Consensus 122 ~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~--~~~L~~l~~~~~~~~~~~~lI~~s~~~~-~~~~l~~~v~sr 198 (418)
+ .+.. ...+.+|+|||+|.+.... +..|+.+++..... ....+|++++... ....+.+++.+|
T Consensus 97 ---~-------~~~~---~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~-~~~~ii~~~~~~~~~~~~~~~~l~~r 162 (242)
T 3bos_A 97 ---A-------LLEG---LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQ-KRGSLIVSASASPMEAGFVLPDLVSR 162 (242)
T ss_dssp ---G-------GGTT---GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHH-CSCEEEEEESSCTTTTTCCCHHHHHH
T ss_pred ---H-------HHHh---ccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHc-CCCeEEEEcCCCHHHHHHhhhhhhhH
Confidence 0 0000 1246799999999998764 77777777654332 2222444444322 122334678888
Q ss_pred cC-ceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhh
Q 014789 199 FS-HRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVS 277 (418)
Q Consensus 199 ~~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~ 277 (418)
+. ...+.|+|++.+++.+++..++.. .++ .++++.+..++. . ..||+|.+.+++..+..
T Consensus 163 ~~~~~~i~l~~~~~~~~~~~l~~~~~~---~~~--------------~~~~~~~~~l~~-~--~~g~~r~l~~~l~~~~~ 222 (242)
T 3bos_A 163 MHWGLTYQLQPMMDDEKLAALQRRAAM---RGL--------------QLPEDVGRFLLN-R--MARDLRTLFDVLDRLDK 222 (242)
T ss_dssp HHHSEEEECCCCCGGGHHHHHHHHHHH---TTC--------------CCCHHHHHHHHH-H--TTTCHHHHHHHHHHHHH
T ss_pred hhcCceEEeCCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHHHHH-H--ccCCHHHHHHHHHHHHH
Confidence 83 257899999999999999988641 000 123333333333 2 36999999999998877
Q ss_pred cccccCCCCChhhHHHHHh
Q 014789 278 YMDLESGFLSFENFKTALS 296 (418)
Q Consensus 278 ~a~~~~~~it~~~v~~a~~ 296 (418)
.+......|+.+++.+++.
T Consensus 223 ~a~~~~~~It~~~v~~~l~ 241 (242)
T 3bos_A 223 ASMVHQRKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHTCCCCHHHHHHHHT
T ss_pred HHHHhCCCCcHHHHHHHhh
Confidence 7644456799999998864
No 32
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.72 E-value=4.4e-17 Score=151.42 Aligned_cols=162 Identities=19% Similarity=0.327 Sum_probs=111.8
Q ss_pred CCCCChhhhHHHHHHHHHHHHh---------cCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVT---------EACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~---------~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.+.|.++..+.|.+.+...+. -..+.+++|+||||||||++++.++..+. ..++.++|...
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~------~~~i~v~~~~l--- 85 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ------ANFISIKGPEL--- 85 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT------CEEEEECHHHH---
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC------CCEEEEEhHHH---
Confidence 4689999999999988875422 23467899999999999999999998764 34577776321
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc-----------hhHHHHHHh
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK-----------QRLLYSLLD 167 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~-----------~~~L~~l~~ 167 (418)
. ...... + ......+++.... ..|.||+|||+|.+.... ...+..++.
T Consensus 86 ---~----~~~~g~---------~-~~~~~~~f~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~ 144 (301)
T 3cf0_A 86 ---L----TMWFGE---------S-EANVREIFDKARQ----AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILT 144 (301)
T ss_dssp ---H----HHHHTT---------C-TTHHHHHHHHHHH----TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHH
T ss_pred ---H----hhhcCc---------h-HHHHHHHHHHHHh----cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHH
Confidence 1 111000 0 1122233333332 257899999999987531 223455554
Q ss_pred hhcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 168 AMQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 168 ~~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
.... ...++.||++||.. +.+++.+.+ ||. ..+.+++++.++..+|++..+.
T Consensus 145 ~l~~~~~~~~v~vi~atn~~---~~ld~al~r~gRf~-~~i~i~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 145 EMDGMSTKKNVFIIGATNRP---DIIDPAILRPGRLD-QLIYIPLPDEKSRVAILKANLR 200 (301)
T ss_dssp HHHSSCTTSSEEEEEEESCG---GGSCGGGGSTTSSC-EEEECCCCCHHHHHHHHHHHHT
T ss_pred HhhcccCCCCEEEEEecCCc---cccChHHhcCCccc-eEEecCCcCHHHHHHHHHHHHc
Confidence 4432 24579999999984 456778877 886 6789999999999999999886
No 33
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.72 E-value=2.3e-16 Score=151.92 Aligned_cols=162 Identities=20% Similarity=0.282 Sum_probs=109.1
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc--------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE--------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~--------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
+.++|.+..++.|...+...... ..+.+++|+||||||||++++.++..+. ..+++++|.......
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~------~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN------ATFFNISAASLTSKY 188 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT------CEEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc------CcEEEeeHHHhhccc
Confidence 35899999999999988665432 2367999999999999999999988754 556889987654321
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--------chhHHHHHHhhhc-
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--------KQRLLYSLLDAMQ- 170 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--------~~~~L~~l~~~~~- 170 (418)
.. ........+++..... .+.||+|||+|.+... ...++..++....
T Consensus 189 --~g------------------~~~~~~~~~~~~a~~~----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~ 244 (389)
T 3vfd_A 189 --VG------------------EGEKLVRALFAVAREL----QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDG 244 (389)
T ss_dssp -----------------------CHHHHHHHHHHHHHS----SSEEEEEETGGGGC--------CTHHHHHHHHHHHHHH
T ss_pred --cc------------------hHHHHHHHHHHHHHhc----CCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhc
Confidence 00 1112223333333332 4689999999999543 1122223332221
Q ss_pred ---cCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 171 ---SVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 171 ---~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
....++.||+++|. .+.+++.+.+||. ..+.|++++.++..+|+...+.
T Consensus 245 ~~~~~~~~v~vI~atn~---~~~l~~~l~~R~~-~~i~i~~p~~~~r~~il~~~~~ 296 (389)
T 3vfd_A 245 VQSAGDDRVLVMGATNR---PQELDEAVLRRFI-KRVYVSLPNEETRLLLLKNLLC 296 (389)
T ss_dssp HC-----CEEEEEEESC---GGGCCHHHHTTCC-EEEECCCCCHHHHHHHHHHHHT
T ss_pred ccccCCCCEEEEEecCC---chhcCHHHHcCcc-eEEEcCCcCHHHHHHHHHHHHH
Confidence 23467999999988 4567889999996 4689999999999999998875
No 34
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.72 E-value=1.1e-16 Score=153.43 Aligned_cols=229 Identities=14% Similarity=0.154 Sum_probs=142.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
+.++|++.+++.+...+.. +..++.++|+||+|+|||++++.+++.+....+. ...+|.... ....+..
T Consensus 16 ~~~vg~~~~~~~L~~~l~~---~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~----~~~~~~~~~----~~~~~~~ 84 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI----TATPCGVCD----NCREIEQ 84 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHH---TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCS----CSSCCSSSH----HHHHHHT
T ss_pred hhccCcHHHHHHHHHHHHh---CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCC----CCCCCcccH----HHHHHhc
Confidence 3589999999998888753 2335678999999999999999999988654311 111222211 1111110
Q ss_pred HHHHhh-hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 108 QLCMEH-QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 108 ~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
...... ...... ....+....+.+.+......+.+.||||||+|.+....++.|..+++. ...++.+|++++..
T Consensus 85 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~---~~~~~~~Il~~~~~- 159 (373)
T 1jr3_A 85 GRFVDLIEIDAAS-RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE---PPEHVKFLLATTDP- 159 (373)
T ss_dssp SCCSSCEEEETTC-SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS---CCSSEEEEEEESCG-
T ss_pred cCCCceEEecccc-cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc---CCCceEEEEEeCCh-
Confidence 000000 000000 011122333444444333345689999999999977655666555543 34678888888763
Q ss_pred hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH-HhCChhHHHHHHHHhccccCH
Q 014789 187 ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKN-ILADGRFKEIVNTLVNLDSTV 265 (418)
Q Consensus 187 ~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gd~ 265 (418)
..+.+.+.||+ ..+.|+|++.+++.+++..++.- .+ .++++++..++. . ..|++
T Consensus 160 --~~l~~~l~sr~--~~i~~~~l~~~~~~~~l~~~~~~------------------~~~~~~~~a~~~l~~-~--~~G~~ 214 (373)
T 1jr3_A 160 --QKLPVTILSRC--LQFHLKALDVEQIRHQLEHILNE------------------EHIAHEPRALQLLAR-A--AEGSL 214 (373)
T ss_dssp --GGSCHHHHTTS--EEEECCCCCHHHHHHHHHHHHHH------------------HTCCBCHHHHHHHHH-H--SSSCH
T ss_pred --HhCcHHHHhhe--eEeeCCCCCHHHHHHHHHHHHHH------------------cCCCCCHHHHHHHHH-H--CCCCH
Confidence 35567888998 67999999999999999987640 01 123333333332 2 36999
Q ss_pred HHHHHHHHHHhhcccccCCCCChhhHHHHHhccCC
Q 014789 266 NHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHR 300 (418)
Q Consensus 266 r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~ 300 (418)
|.+.+++..+... +...|+.++|.+++.....
T Consensus 215 r~~~~~l~~~~~~---~~~~i~~~~v~~~~~~~~~ 246 (373)
T 1jr3_A 215 RDALSLTDQAIAS---GDGQVSTQAVSAMLGTLDD 246 (373)
T ss_dssp HHHHHHHHHHHHH---TTTCBCHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHHh---cCCcccHHHHHHHhCCCCH
Confidence 9999999887654 3457999999888766543
No 35
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.72 E-value=3e-16 Score=142.42 Aligned_cols=217 Identities=17% Similarity=0.209 Sum_probs=143.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHh--------cCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVT--------EACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~--------~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
+.++|.++..+.+...+..... ...+.+++|+||||||||++++.++..+. ..+++++|.......
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~------~~~~~i~~~~~~~~~ 85 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK------VPFFTISGSDFVEMF 85 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT------CCEEEECSCSSTTSC
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC------CCEEEEeHHHHHHHh
Confidence 4689999999999887765321 12366899999999999999999998764 234778876543210
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcch-----------hHHHHHHhh
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQ-----------RLLYSLLDA 168 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~-----------~~L~~l~~~ 168 (418)
.+.+ ......+++.... ..+.+++|||+|.+....+ ..+..++..
T Consensus 86 -------------------~~~~-~~~~~~~~~~a~~----~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ 141 (257)
T 1lv7_A 86 -------------------VGVG-ASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVE 141 (257)
T ss_dssp -------------------CCCC-HHHHHHHHHHHHT----TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHH
T ss_pred -------------------hhhh-HHHHHHHHHHHHH----cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHH
Confidence 0001 1112222222222 2578999999999976421 344555544
Q ss_pred hcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH
Q 014789 169 MQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKN 244 (418)
Q Consensus 169 ~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 244 (418)
... ...++.+|++||.. +.+++++.+ ||. +.+.+++++.++..+|++..+.- ..+
T Consensus 142 l~~~~~~~~~~vI~~tn~~---~~l~~~l~r~~rf~-~~i~i~~P~~~~r~~il~~~~~~---~~l-------------- 200 (257)
T 1lv7_A 142 MDGFEGNEGIIVIAATNRP---DVLDPALLRPGRFD-RQVVVGLPDVRGREQILKVHMRR---VPL-------------- 200 (257)
T ss_dssp HHTCCSSSCEEEEEEESCT---TTSCGGGGSTTSSC-EEEECCCCCHHHHHHHHHHHHTT---SCB--------------
T ss_pred hhCcccCCCEEEEEeeCCc---hhCCHHHcCCCcCC-eEEEeCCCCHHHHHHHHHHHHhc---CCC--------------
Confidence 332 24578999999985 456777776 786 57899999999999999888751 011
Q ss_pred HhCChhHHHHHHHHhcccc-CHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccC
Q 014789 245 ILADGRFKEIVNTLVNLDS-TVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSH 299 (418)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~g-d~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~ 299 (418)
.++.....+. ....| +.|.+..++..|...|. .+...|+.+|+.+|+..+.
T Consensus 201 --~~~~~~~~la--~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 201 --APDIDAAIIA--RGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp --CTTCCHHHHH--HTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred --CccccHHHHH--HHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 1111111222 22457 99999999998877654 3567899999999987654
No 36
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.71 E-value=6e-16 Score=147.18 Aligned_cols=177 Identities=17% Similarity=0.263 Sum_probs=116.9
Q ss_pred HHHHHhhcCCCC-ccCCCCCChhhhHHHHHHHHHHHHh--------cCCCceEEEECCCCCchHHHHHHHHHHHhhhCCC
Q 014789 13 NLLRSRLCDPNF-VVKHLSDSPDSNYSKLKFLVSSSVT--------EACNNSILLLGPRGSGKIAVLELILTDLLLEYPD 83 (418)
Q Consensus 13 ~~~~~~~~~~~~-~~~~~l~gr~~e~~~l~~~l~~~~~--------~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~ 83 (418)
..+...+++..- +.-+.++|.++.++.|.+.+...+. ...+.+++|+||||||||++++.+++.+.
T Consensus 68 ~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~----- 142 (357)
T 3d8b_A 68 ELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG----- 142 (357)
T ss_dssp HHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT-----
T ss_pred HHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC-----
Confidence 344455554321 1114689999999999998865332 23578999999999999999999998764
Q ss_pred CeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc-----
Q 014789 84 TISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK----- 158 (418)
Q Consensus 84 ~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~----- 158 (418)
..+++++|....... .. ........++..... ..+.||+|||+|.+....
T Consensus 143 -~~~~~i~~~~l~~~~--~g------------------~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~ 197 (357)
T 3d8b_A 143 -ATFFSISASSLTSKW--VG------------------EGEKMVRALFAVARC----QQPAVIFIDEIDSLLSQRGDGEH 197 (357)
T ss_dssp -CEEEEEEGGGGCCSS--TT------------------HHHHHHHHHHHHHHH----TCSEEEEEETHHHHTBC------
T ss_pred -CeEEEEehHHhhccc--cc------------------hHHHHHHHHHHHHHh----cCCeEEEEeCchhhhccCCCCcc
Confidence 456788886543310 00 011112223333322 257899999999996531
Q ss_pred ---hhHHHHHHhhhc----cCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 159 ---QRLLYSLLDAMQ----SVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 159 ---~~~L~~l~~~~~----~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
...+..++.... ....++.||++||.. +.+++.+.+||. ..+.+++++.++..+++...+.
T Consensus 198 ~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~---~~l~~~l~~Rf~-~~i~i~~p~~~~r~~il~~~~~ 265 (357)
T 3d8b_A 198 ESSRRIKTEFLVQLDGATTSSEDRILVVGATNRP---QEIDEAARRRLV-KRLYIPLPEASARKQIVINLMS 265 (357)
T ss_dssp CHHHHHHHHHHHHHHC----CCCCEEEEEEESCG---GGBCHHHHTTCC-EEEECCCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccCCCCEEEEEecCCh---hhCCHHHHhhCc-eEEEeCCcCHHHHHHHHHHHHh
Confidence 122333332222 234689999999884 457788999996 5688999999999999998874
No 37
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=2.9e-16 Score=149.27 Aligned_cols=228 Identities=15% Similarity=0.122 Sum_probs=145.1
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
+.++|+++.++.+...+ ..+..++++|+||||+|||++++.+++.+.........++.++|...... ..+.+...
T Consensus 37 ~~i~g~~~~~~~l~~~l----~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 111 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTL----KSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGI-SIVREKVK 111 (353)
T ss_dssp TTCCSCCTTHHHHHHHT----TCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCH-HHHTTHHH
T ss_pred HHhhCCHHHHHHHHHHH----hcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccch-HHHHHHHH
Confidence 36899999988776664 44555569999999999999999999988643101245677887654332 22332222
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCCh
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDA 187 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~ 187 (418)
...... +...... . ... ...+.+.||+|||+|.+....+..|..+++... ....+|+++|.
T Consensus 112 ~~~~~~---~~~~~~~------~---~~~-~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~---~~~~~il~~~~--- 172 (353)
T 1sxj_D 112 NFARLT---VSKPSKH------D---LEN-YPCPPYKIIILDEADSMTADAQSALRRTMETYS---GVTRFCLICNY--- 172 (353)
T ss_dssp HHHHSC---CCCCCTT------H---HHH-SCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT---TTEEEEEEESC---
T ss_pred HHhhhc---ccccchh------h---ccc-CCCCCceEEEEECCCccCHHHHHHHHHHHHhcC---CCceEEEEeCc---
Confidence 221110 0000000 0 000 112356899999999998877777777766543 45566677765
Q ss_pred HHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHH
Q 014789 188 DQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNH 267 (418)
Q Consensus 188 ~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~ 267 (418)
...+.+.+.+|+ ..+.|+|++.+++.+++..++... ++ .++++.+..++. . ..||+|.
T Consensus 173 ~~~l~~~l~sR~--~~i~~~~~~~~~~~~~l~~~~~~~---~~--------------~i~~~~l~~l~~-~--~~G~~r~ 230 (353)
T 1sxj_D 173 VTRIIDPLASQC--SKFRFKALDASNAIDRLRFISEQE---NV--------------KCDDGVLERILD-I--SAGDLRR 230 (353)
T ss_dssp GGGSCHHHHHHS--EEEECCCCCHHHHHHHHHHHHHTT---TC--------------CCCHHHHHHHHH-H--TSSCHHH
T ss_pred hhhCcchhhccC--ceEEeCCCCHHHHHHHHHHHHHHh---CC--------------CCCHHHHHHHHH-H--cCCCHHH
Confidence 335678899998 478999999999999999886411 11 123333333333 2 2499999
Q ss_pred HHHHHHHHhhcccc-cC-CCCChhhHHHHHhccCCC
Q 014789 268 LLRFLFLAVSYMDL-ES-GFLSFENFKTALSNSHRQ 301 (418)
Q Consensus 268 ~~~~l~~a~~~a~~-~~-~~it~~~v~~a~~~~~~~ 301 (418)
+++++..+...+.. +. ..|+.++|.++.......
T Consensus 231 ~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~~~~~~ 266 (353)
T 1sxj_D 231 GITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHD 266 (353)
T ss_dssp HHHHHHHTHHHHHHHCSCCCCCHHHHHHHHTCCCSH
T ss_pred HHHHHHHHHHhcCCCccCccccHHHHHHHhCCCCHH
Confidence 99999876655322 11 279999999888755443
No 38
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.71 E-value=7.9e-16 Score=140.89 Aligned_cols=213 Identities=15% Similarity=0.135 Sum_probs=132.1
Q ss_pred CCCCChhhhHHHHHHH---HHHHHh---cCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHH
Q 014789 28 HLSDSPDSNYSKLKFL---VSSSVT---EACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCA 101 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~---l~~~~~---~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~ 101 (418)
+.++|.++.++.+... +...+. ...+.+++|+||||||||++++.+++.+. ..++.++|........
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~------~~~~~i~~~~~~~g~~- 105 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN------FPFIKICSPDKMIGFS- 105 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT------CSEEEEECGGGCTTCC-
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC------CCEEEEeCHHHhcCCc-
Confidence 4688999888888774 444444 44577899999999999999999999854 3356677643110000
Q ss_pred HHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhh------c-chhHHHHHHhhhc---c
Q 014789 102 FKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQ------G-KQRLLYSLLDAMQ---S 171 (418)
Q Consensus 102 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~------~-~~~~L~~l~~~~~---~ 171 (418)
... .......+++.... ..+.+|+|||+|.+.. . ...++..|.+... .
T Consensus 106 ~~~------------------~~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~ 163 (272)
T 1d2n_A 106 ETA------------------KCQAMKKIFDDAYK----SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPP 163 (272)
T ss_dssp HHH------------------HHHHHHHHHHHHHT----SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCS
T ss_pred hHH------------------HHHHHHHHHHHHHh----cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccC
Confidence 000 00011112222211 3589999999999843 2 2233333333332 2
Q ss_pred CCCcEEEEEeccCCChHHHHHH-HhhcccCceEEEecCCCH-HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCCh
Q 014789 172 VTSQAVVIGVSCRLDADQLLEK-RVRSRFSHRKLLFLPPSK-EDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADG 249 (418)
Q Consensus 172 ~~~~~~lI~~s~~~~~~~~l~~-~v~sr~~~~~i~~~~~~~-~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (418)
...++.+|++||. .+.+++ .+.+||. ..+.++|++. +++..++..... ++++
T Consensus 164 ~~~~~~ii~ttn~---~~~l~~~~l~~rf~-~~i~~p~l~~r~~i~~i~~~~~~----------------------~~~~ 217 (272)
T 1d2n_A 164 QGRKLLIIGTTSR---KDVLQEMEMLNAFS-TTIHVPNIATGEQLLEALELLGN----------------------FKDK 217 (272)
T ss_dssp TTCEEEEEEEESC---HHHHHHTTCTTTSS-EEEECCCEEEHHHHHHHHHHHTC----------------------SCHH
T ss_pred CCCCEEEEEecCC---hhhcchhhhhcccc-eEEcCCCccHHHHHHHHHHhcCC----------------------CCHH
Confidence 3457889999987 456666 6788986 5689999986 888888776421 2233
Q ss_pred hHHHHHHHHhc--cccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccC
Q 014789 250 RFKEIVNTLVN--LDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSH 299 (418)
Q Consensus 250 ~~~~~~~~~~~--~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~ 299 (418)
.+..+++...+ ..|++|.+++++..|...+ +....+++.+++....
T Consensus 218 ~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~----~~~~~~~~~~~l~~~~ 265 (272)
T 1d2n_A 218 ERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD----PEYRVRKFLALLREEG 265 (272)
T ss_dssp HHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC----GGGHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCccccHHHHHHHHHHHhhhc----hHHHHHHHHHHHHHcC
Confidence 34444444322 2569999999998876553 2345566666665443
No 39
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.70 E-value=7.5e-16 Score=142.92 Aligned_cols=221 Identities=18% Similarity=0.238 Sum_probs=136.7
Q ss_pred CCCCChhhhHHHHHHHHHHHHh--------cCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVT--------EACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~--------~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
+.++|.++.++.|...+..... ...+.+++|+||||||||++++.+++.+. ..++.++|.......
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~------~~~~~i~~~~l~~~~ 94 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS------ATFLNISAASLTSKY 94 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT------CEEEEEESTTTSSSS
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC------CCeEEeeHHHHhhcc
Confidence 4689999999999988765432 12467999999999999999999998764 445778886543210
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc--------hhHHHHHHhhhcc
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK--------QRLLYSLLDAMQS 171 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~--------~~~L~~l~~~~~~ 171 (418)
.+........++...... .+.||+|||+|.+.... ......++.....
T Consensus 95 --------------------~~~~~~~~~~~~~~~~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~ 150 (297)
T 3b9p_A 95 --------------------VGDGEKLVRALFAVARHM----QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDG 150 (297)
T ss_dssp --------------------CSCHHHHHHHHHHHHHHT----CSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHH
T ss_pred --------------------cchHHHHHHHHHHHHHHc----CCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhc
Confidence 011222233333333332 57899999999997541 1222233322221
Q ss_pred -----CCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHh
Q 014789 172 -----VTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNIL 246 (418)
Q Consensus 172 -----~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 246 (418)
...++.+|++||.. +.+++.+.+||. ..+.+++++.++...|+...+.-. ...+
T Consensus 151 ~~~~~~~~~v~vi~~tn~~---~~l~~~l~~R~~-~~i~~~~p~~~~r~~il~~~~~~~-~~~~---------------- 209 (297)
T 3b9p_A 151 LPGNPDGDRIVVLAATNRP---QELDEAALRRFT-KRVYVSLPDEQTRELLLNRLLQKQ-GSPL---------------- 209 (297)
T ss_dssp CC------CEEEEEEESCG---GGBCHHHHHHCC-EEEECCCCCHHHHHHHHHHHHGGG-SCCS----------------
T ss_pred ccccCCCCcEEEEeecCCh---hhCCHHHHhhCC-eEEEeCCcCHHHHHHHHHHHHHhc-CCCC----------------
Confidence 12468999999884 456788888997 568899999999999998876510 0111
Q ss_pred CChhHHHHHHHHhccccCHH-HHHHHHHHHhhccc-------------ccCCCCChhhHHHHHhccCCCc
Q 014789 247 ADGRFKEIVNTLVNLDSTVN-HLLRFLFLAVSYMD-------------LESGFLSFENFKTALSNSHRQP 302 (418)
Q Consensus 247 ~~~~~~~~~~~~~~~~gd~r-~~~~~l~~a~~~a~-------------~~~~~it~~~v~~a~~~~~~~~ 302 (418)
++..+..+++.. .|..+ .+..++..|...+. .....|+.+||..|+..+.++.
T Consensus 210 ~~~~~~~la~~~---~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~ 276 (297)
T 3b9p_A 210 DTEALRRLAKIT---DGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSV 276 (297)
T ss_dssp CHHHHHHHHHHT---TTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSS
T ss_pred CHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCC
Confidence 222233333322 24333 33355555432221 1235789999998888766543
No 40
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=5.4e-16 Score=145.72 Aligned_cols=211 Identities=20% Similarity=0.211 Sum_probs=139.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
+.++|+++.++.+...+.. +..++++|+||||+|||++++.+++.+..... ...++.++|...... ..++...
T Consensus 25 ~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~-~~~~~~~~~~~~~~~-~~~~~~~- 97 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKT----GSMPHLLFAGPPGVGKTTAALALARELFGENW-RHNFLELNASDERGI-NVIREKV- 97 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHH----TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGH-HHHEEEEETTCHHHH-HTTHHHH-
T ss_pred HHhhCCHHHHHHHHHHHHc----CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc-cCceEEeeccccCch-HHHHHHH-
Confidence 3589999999988877643 45557999999999999999999998754321 134567776432110 0111111
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCC-CceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGL-AHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
.+....... .+.+.||+|||+|.+....++.|..+++.+ ...+.+|++++..
T Consensus 98 -----------------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~---~~~~~~i~~~~~~- 150 (327)
T 1iqp_A 98 -----------------------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF---SSNVRFILSCNYS- 150 (327)
T ss_dssp -----------------------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT---TTTEEEEEEESCG-
T ss_pred -----------------------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc---CCCCeEEEEeCCc-
Confidence 111111110 135789999999999876667777666653 3567788888763
Q ss_pred hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHH
Q 014789 187 ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVN 266 (418)
Q Consensus 187 ~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r 266 (418)
..+.+.+.||+ ..+.|+|++.+++.+++..++.. .+. .++++++..++. . ..||+|
T Consensus 151 --~~l~~~l~sr~--~~~~~~~l~~~~~~~~l~~~~~~---~~~--------------~~~~~~~~~l~~-~--~~g~~r 206 (327)
T 1iqp_A 151 --SKIIEPIQSRC--AIFRFRPLRDEDIAKRLRYIAEN---EGL--------------ELTEEGLQAILY-I--AEGDMR 206 (327)
T ss_dssp --GGSCHHHHHTE--EEEECCCCCHHHHHHHHHHHHHT---TTC--------------EECHHHHHHHHH-H--HTTCHH
T ss_pred --cccCHHHHhhC--cEEEecCCCHHHHHHHHHHHHHh---cCC--------------CCCHHHHHHHHH-H--CCCCHH
Confidence 35677888998 47899999999999999987641 111 123333333333 2 369999
Q ss_pred HHHHHHHHHhhcccccCCCCChhhHHHHHhccCC
Q 014789 267 HLLRFLFLAVSYMDLESGFLSFENFKTALSNSHR 300 (418)
Q Consensus 267 ~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~ 300 (418)
.+++++..+... ...|+.++|.++.....+
T Consensus 207 ~~~~~l~~~~~~----~~~i~~~~v~~~~~~~~~ 236 (327)
T 1iqp_A 207 RAINILQAAAAL----DKKITDENVFMVASRARP 236 (327)
T ss_dssp HHHHHHHHHHTT----CSEECHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHhc----CCCCCHHHHHHHHCCCCH
Confidence 999999876533 236888888877665443
No 41
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.70 E-value=9.8e-17 Score=157.82 Aligned_cols=162 Identities=20% Similarity=0.268 Sum_probs=113.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHh---------cCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVT---------EACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~---------~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.++|.++++++|.+.+...+. ...+.++||+||||||||++++++++.+. ..++++||....+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~------~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLINGPEIMSK 277 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS------SEEEEEEHHHHHTS
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC------CCEEEEEchHhhhh
Confidence 3589999999999998876533 24577899999999999999999988763 45688887543221
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc--------hhHHHHHHhhhc
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK--------QRLLYSLLDAMQ 170 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~--------~~~L~~l~~~~~ 170 (418)
.+.+ .......+++.... +.|.+|+|||+|.+.... ..++..|+...+
T Consensus 278 --~~g~------------------~~~~~~~~f~~A~~----~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld 333 (489)
T 3hu3_A 278 --LAGE------------------SESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 333 (489)
T ss_dssp --CTTH------------------HHHHHHHHHHHHHH----TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHH
T ss_pred --hcch------------------hHHHHHHHHHHHHh----cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhh
Confidence 0000 01111222222222 257899999999998642 134444544443
Q ss_pred c--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 171 S--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 171 ~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
. ...++.+|++||.. +.+++.+.+ ||. ..+.+++++.++..+|++.++.
T Consensus 334 ~~~~~~~v~vIaaTn~~---~~Ld~al~r~gRf~-~~i~i~~P~~~eR~~IL~~~~~ 386 (489)
T 3hu3_A 334 GLKQRAHVIVMAATNRP---NSIDPALRRFGRFD-REVDIGIPDATGRLEILQIHTK 386 (489)
T ss_dssp HSCTTSCEEEEEEESCG---GGBCGGGGSTTSSC-EEEECCCCCHHHHHHHHHHHTT
T ss_pred ccccCCceEEEEecCCc---cccCHHHhCCCcCc-eEEEeCCCCHHHHHHHHHHHHh
Confidence 2 34689999999984 456788888 775 5699999999999999999875
No 42
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.69 E-value=7.2e-16 Score=144.85 Aligned_cols=230 Identities=12% Similarity=0.119 Sum_probs=141.3
Q ss_pred hhcCCCCccCCCCCChhhhHHHHHHHHHHHHhcC--CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccC
Q 014789 18 RLCDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEA--CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLH 95 (418)
Q Consensus 18 ~~~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~--~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~ 95 (418)
..+++.+.+++.++|.+.... . ..+...+..+ .+++++|+||||||||++++.+++.+.... ..+++++|...
T Consensus 2 ~~l~~~~~f~~fv~g~~~~~a-~-~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~---~~~~~i~~~~~ 76 (324)
T 1l8q_A 2 DFLNPKYTLENFIVGEGNRLA-Y-EVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRG---YRVIYSSADDF 76 (324)
T ss_dssp CCCCTTCCSSSCCCCTTTHHH-H-HHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTT---CCEEEEEHHHH
T ss_pred CCCCCCCCcccCCCCCcHHHH-H-HHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEHHHH
Confidence 346788888444446544332 2 2244444443 467899999999999999999999886542 55678887432
Q ss_pred CChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhh--cchhHHHHHHhhhccCC
Q 014789 96 SDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQ--GKQRLLYSLLDAMQSVT 173 (418)
Q Consensus 96 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~--~~~~~L~~l~~~~~~~~ 173 (418)
...+...+... . ...+.+.+. .+.+|+|||+|.+.. ..|..+..+++.....
T Consensus 77 ------~~~~~~~~~~~---------~----~~~~~~~~~------~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~- 130 (324)
T 1l8q_A 77 ------AQAMVEHLKKG---------T----INEFRNMYK------SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLL- 130 (324)
T ss_dssp ------HHHHHHHHHHT---------C----HHHHHHHHH------TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHT-
T ss_pred ------HHHHHHHHHcC---------c----HHHHHHHhc------CCCEEEEcCcccccCChHHHHHHHHHHHHHHHC-
Confidence 22333332111 1 111222222 256999999999986 3566677776654332
Q ss_pred CcEEEEEeccCCChHHHHHHHhhcccCc-eEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHH
Q 014789 174 SQAVVIGVSCRLDADQLLEKRVRSRFSH-RKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFK 252 (418)
Q Consensus 174 ~~~~lI~~s~~~~~~~~l~~~v~sr~~~-~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (418)
...+++++++.......+++++.|||.. ..+.|+| +.+++.+|+..++... ++ .++++++.
T Consensus 131 ~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~---~~--------------~l~~~~l~ 192 (324)
T 1l8q_A 131 EKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEF---NL--------------ELRKEVID 192 (324)
T ss_dssp TCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHT---TC--------------CCCHHHHH
T ss_pred CCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhc---CC--------------CCCHHHHH
Confidence 2344555544433223578899999852 4689999 9999999999987410 00 12333333
Q ss_pred HHHHHHhccccCHHHHHHHHHHHhhcc-----cccCCCC-ChhhHHHHHhccCC
Q 014789 253 EIVNTLVNLDSTVNHLLRFLFLAVSYM-----DLESGFL-SFENFKTALSNSHR 300 (418)
Q Consensus 253 ~~~~~~~~~~gd~r~~~~~l~~a~~~a-----~~~~~~i-t~~~v~~a~~~~~~ 300 (418)
. +... . ||+|.+..++..+.... ..+...| +.+++.+++...+.
T Consensus 193 ~-l~~~--~-g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~~~ 242 (324)
T 1l8q_A 193 Y-LLEN--T-KNVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANYYA 242 (324)
T ss_dssp H-HHHH--C-SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred H-HHHh--C-CCHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHHHhC
Confidence 3 3332 2 99999988888766540 0123458 88999988876554
No 43
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.68 E-value=1.8e-15 Score=141.60 Aligned_cols=210 Identities=18% Similarity=0.164 Sum_probs=137.6
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++|++..++.+...+ ..+..++++|+||||+|||++++.+++.+..... ...++++||....... .+......
T Consensus 18 ~~~g~~~~~~~l~~~l----~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~ 91 (319)
T 2chq_A 18 EVVGQDEVIQRLKGYV----ERKNIPHLLFSGPPGTGKTATAIALARDLFGENW-RDNFIEMNASDERGID-VVRHKIKE 91 (319)
T ss_dssp GSCSCHHHHHHHHTTT----TTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCH-HHHCEEEETTSTTCTT-TSSHHHHH
T ss_pred HHhCCHHHHHHHHHHH----hCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcc-cCCeEEEeCccccChH-HHHHHHHH
Confidence 5889999988877765 4445556999999999999999999998743221 1335677775532211 11111111
Q ss_pred HHHhhhcccccCCChHhHHHHHHHHHhhcC-CCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCCh
Q 014789 109 LCMEHQLLFSKMASFDDNSQFMIEMLRECG-LAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDA 187 (418)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~ 187 (418)
+ ..... ..+.+.|++|||+|.+....++.|.. ..+....++.+|+++|..
T Consensus 92 ~------------------------~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~---~le~~~~~~~~i~~~~~~-- 142 (319)
T 2chq_A 92 F------------------------ARTAPIGGAPFKIIFLDEADALTADAQAALRR---TMEMYSKSCRFILSCNYV-- 142 (319)
T ss_dssp H------------------------HHSCCSSSCCCEEEEEETGGGSCHHHHHTTGG---GTSSSSSSEEEEEEESCG--
T ss_pred H------------------------HhcCCCCCCCceEEEEeCCCcCCHHHHHHHHH---HHHhcCCCCeEEEEeCCh--
Confidence 1 11111 12357899999999997654444444 444444678888888773
Q ss_pred HHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHH
Q 014789 188 DQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNH 267 (418)
Q Consensus 188 ~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~ 267 (418)
..+.+.+.||+ ..+.|+|++.+++.+++..++.- .++ .++++++..++ . ...||+|.
T Consensus 143 -~~l~~~l~sr~--~~i~~~~~~~~~~~~~l~~~~~~---~~~--------------~i~~~~l~~l~-~--~~~G~~r~ 199 (319)
T 2chq_A 143 -SRIIEPIQSRC--AVFRFKPVPKEAMKKRLLEICEK---EGV--------------KITEDGLEALI-Y--ISGGDFRK 199 (319)
T ss_dssp -GGSCHHHHTTC--EEEECCCCCHHHHHHHHHHHHHT---TCC--------------CBCHHHHHHHH-H--TTTTCHHH
T ss_pred -hhcchHHHhhC--eEEEecCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHHHHHH-H--HcCCCHHH
Confidence 45678899998 47999999999999999988641 111 12333333333 2 23699999
Q ss_pred HHHHHHHHhhcccccCCCCChhhHHHHHhccCC
Q 014789 268 LLRFLFLAVSYMDLESGFLSFENFKTALSNSHR 300 (418)
Q Consensus 268 ~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~ 300 (418)
+++.+..+... ...|+.++|.++......
T Consensus 200 ~~~~l~~~~~~----~~~i~~~~v~~~~~~~~~ 228 (319)
T 2chq_A 200 AINALQGAAAI----GEVVDADTIYQITATARP 228 (319)
T ss_dssp HHHHHHHHHHS----SSCBCHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHc----CCCCCHHHHHHHHCCCCH
Confidence 99999775432 347999999887765433
No 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.67 E-value=6.2e-16 Score=151.12 Aligned_cols=163 Identities=20% Similarity=0.268 Sum_probs=111.7
Q ss_pred CCCCChhhhHHHHHHHHHHHHh--------cCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVT--------EACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~--------~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
+.++|.++..+.|...+...+. ...+.+++|+||||||||+++++++..+.. ..++.++|......
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~-----~~~~~v~~~~l~~~- 207 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-----STFFSISSSDLVSK- 207 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS-----SEEEEECCC------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC-----CCEEEEeHHHHHhh-
Confidence 4588999999999887743322 124678999999999999999999998721 44677887543221
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--------chhHHHHHHhhhcc
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--------KQRLLYSLLDAMQS 171 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--------~~~~L~~l~~~~~~ 171 (418)
+ .+ ........+++..... .|.||+|||+|.+... ...++..++.....
T Consensus 208 --~------~g-----------~~~~~~~~~f~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~ 264 (444)
T 2zan_A 208 --W------LG-----------ESEKLVKNLFQLAREN----KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG 264 (444)
T ss_dssp -----------------------CCCTHHHHHHHHHHS----CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTC
T ss_pred --h------cc-----------hHHHHHHHHHHHHHHc----CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhC
Confidence 0 00 0111233344444332 5789999999999653 12344555554432
Q ss_pred ---CCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 172 ---VTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 172 ---~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
...++.||++||.. +.+++.+.+||. ..+.+++++.++...|++..+.
T Consensus 265 ~~~~~~~v~vI~atn~~---~~ld~al~rRf~-~~i~i~~P~~~~r~~il~~~l~ 315 (444)
T 2zan_A 265 VGVDNDGILVLGATNIP---WVLDSAIRRRFE-KRIYIPLPEAHARAAMFRLHLG 315 (444)
T ss_dssp SSCCCSSCEEEEEESCG---GGSCHHHHTTCC-EEEECCCCCHHHHHHHHHHHHT
T ss_pred cccCCCCEEEEecCCCc---cccCHHHHhhcc-eEEEeCCcCHHHHHHHHHHHHh
Confidence 34679999999984 567889999996 5788999999999999999875
No 45
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=4.5e-15 Score=140.35 Aligned_cols=284 Identities=13% Similarity=0.151 Sum_probs=165.2
Q ss_pred cCCCCccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 20 CDPNFVVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 20 ~~~~~~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
+.|.... .++|.+..++.|...+ ..+..++++|+||||+|||++++.+++.+..... ...+..+|+......
T Consensus 19 ~rp~~~~--~~~g~~~~~~~L~~~i----~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~-~~~~~~~~~~~~~~~- 90 (340)
T 1sxj_C 19 YRPETLD--EVYGQNEVITTVRKFV----DEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY-SNMVLELNASDDRGI- 90 (340)
T ss_dssp TCCSSGG--GCCSCHHHHHHHHHHH----HTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH-HHHEEEECTTSCCSH-
T ss_pred hCCCcHH--HhcCcHHHHHHHHHHH----hcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc-cceEEEEcCcccccH-
Confidence 4454443 4678877777666554 4555556999999999999999999998864321 134566776543221
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEE
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVI 179 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI 179 (418)
..+++....+... .....+.+.|+||||+|.+....++.|..+++.+. ....+|
T Consensus 91 ~~ir~~i~~~~~~-----------------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~---~~~~~i 144 (340)
T 1sxj_C 91 DVVRNQIKDFAST-----------------------RQIFSKGFKLIILDEADAMTNAAQNALRRVIERYT---KNTRFC 144 (340)
T ss_dssp HHHHTHHHHHHHB-----------------------CCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTT---TTEEEE
T ss_pred HHHHHHHHHHHhh-----------------------cccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCC---CCeEEE
Confidence 1222222211100 00011247899999999998766777776666543 556777
Q ss_pred EeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHh
Q 014789 180 GVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLV 259 (418)
Q Consensus 180 ~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (418)
+++|. ...+.+.+.||+ ..+.|.|++.+++.+++...+.. .++ .++++++ ..+...
T Consensus 145 l~~n~---~~~i~~~i~sR~--~~~~~~~l~~~~~~~~l~~~~~~---~~~--------------~i~~~~~-~~i~~~- 200 (340)
T 1sxj_C 145 VLANY---AHKLTPALLSQC--TRFRFQPLPQEAIERRIANVLVH---EKL--------------KLSPNAE-KALIEL- 200 (340)
T ss_dssp EEESC---GGGSCHHHHTTS--EEEECCCCCHHHHHHHHHHHHHT---TTC--------------CBCHHHH-HHHHHH-
T ss_pred EEecC---ccccchhHHhhc--eeEeccCCCHHHHHHHHHHHHHH---cCC--------------CCCHHHH-HHHHHH-
Confidence 88876 446778999998 47899999999999999987631 111 0122222 223322
Q ss_pred ccccCHHHHHHHHHHHhhcccc-cCCCCChhhHHHHHhccCCCchhhhhcCCChH-HHHHHHHHhhhhhhcCCcccHHHH
Q 014789 260 NLDSTVNHLLRFLFLAVSYMDL-ESGFLSFENFKTALSNSHRQPKLECIKDCSIL-ELYILVCLKRLEVKEQNSYNFNSV 337 (418)
Q Consensus 260 ~~~gd~r~~~~~l~~a~~~a~~-~~~~it~~~v~~a~~~~~~~~~~~~l~~L~~~-~~~iL~a~~~l~~~~~~~~~~~~v 337 (418)
..||+|.+++++..+...+.. +...|+.++|.++..........+.+..+... ....+..+..+... ......++
T Consensus 201 -s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~~~~~~~i~~l~~~i~~~~~~~al~~l~~l~~~--~g~~~~~i 277 (340)
T 1sxj_C 201 -SNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSA--KGLALIDL 277 (340)
T ss_dssp -HTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTTCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHHT--TTCCHHHH
T ss_pred -cCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cCCCHHHH
Confidence 269999999998664433221 23479999998887765443333333322211 11122223333320 12445566
Q ss_pred HHHHHHHHhhcCCCCccC-hhHHHHHHHHHHh
Q 014789 338 MKEYKSIHDSFQTSDYYS-RNVCLRAFEHLLQ 368 (418)
Q Consensus 338 ~~~y~~~~~~~~~~~~~~-~~~~~~~~~~L~~ 368 (418)
...+...++.+. ++ ......+++.|.+
T Consensus 278 ~~~l~~~~~~~~----~~~~~~~~~~~~~l~~ 305 (340)
T 1sxj_C 278 IEGIVKILEDYE----LQNEETRVHLLTKLAD 305 (340)
T ss_dssp HHHHHHHHTTSC----CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc----CCcHHHHHHHHHHHHH
Confidence 665555555432 22 3333345555444
No 46
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=5.5e-16 Score=154.59 Aligned_cols=222 Identities=15% Similarity=0.163 Sum_probs=138.8
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcC-------------CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcccc
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEA-------------CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLL 94 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~-------------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~ 94 (418)
+.++|++++++.|..++....... .+++++|+||||||||++++.+++.+. ..++++||..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~------~~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG------YDILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT------CEEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC------CCEEEEeCCC
Confidence 358999999999999987754322 357899999999999999999999873 5678999987
Q ss_pred CCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCC
Q 014789 95 HSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTS 174 (418)
Q Consensus 95 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~ 174 (418)
..... .+........ ...+....+....+ .....+.+.||+|||+|.+....+..+..|.........
T Consensus 113 ~~~~~-~~~~~i~~~~--------~~~~~~~~~~~~~~---~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~ 180 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNAL--------DNMSVVGYFKHNEE---AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTST 180 (516)
T ss_dssp CCCHH-HHHHTGGGGT--------TBCCSTTTTTC-------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSS
T ss_pred cchHH-HHHHHHHHHh--------ccccHHHHHhhhhh---hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCC
Confidence 76542 2211111100 00001011000000 011234688999999999987766445555555444445
Q ss_pred cEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHH
Q 014789 175 QAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEI 254 (418)
Q Consensus 175 ~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (418)
++++|+.+.... .+ +.+.+|+ ..+.|+|++.+++.+++...+.. ....++++++..+
T Consensus 181 ~iIli~~~~~~~---~l-~~l~~r~--~~i~f~~~~~~~~~~~L~~i~~~-----------------~~~~i~~~~l~~l 237 (516)
T 1sxj_A 181 PLILICNERNLP---KM-RPFDRVC--LDIQFRRPDANSIKSRLMTIAIR-----------------EKFKLDPNVIDRL 237 (516)
T ss_dssp CEEEEESCTTSS---TT-GGGTTTS--EEEECCCCCHHHHHHHHHHHHHH-----------------HTCCCCTTHHHHH
T ss_pred CEEEEEcCCCCc---cc-hhhHhce--EEEEeCCCCHHHHHHHHHHHHHH-----------------cCCCCCHHHHHHH
Confidence 555555433211 12 2355565 57999999999999999876530 0001345544444
Q ss_pred HHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhc
Q 014789 255 VNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSN 297 (418)
Q Consensus 255 ~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~ 297 (418)
++. ..||+|.+++++..+.. +...|+.+++.++...
T Consensus 238 a~~---s~GdiR~~i~~L~~~~~----~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 238 IQT---TRGDIRQVINLLSTIST----TTKTINHENINEISKA 273 (516)
T ss_dssp HHH---TTTCHHHHHHHHTHHHH----HSSCCCTTHHHHHHHH
T ss_pred HHH---cCCcHHHHHHHHHHHHh----cCCCCchHHHHHHHHh
Confidence 432 36999999999866432 4567898888877653
No 47
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.66 E-value=7.7e-16 Score=143.77 Aligned_cols=220 Identities=14% Similarity=0.174 Sum_probs=142.8
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc-----CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE-----ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAF 102 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~-----~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~ 102 (418)
..++|.+..++.+...+.....+ .+..+++|+||||||||++++.+++.+.... ..+++++|........ .
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~---~~~~~~~~~~~~~~~~-~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYMEKHA-V 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG---GGEEEEEGGGCCSTTH-H
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC---cceEEeeccccccccc-H
Confidence 46889999999999999887432 1235799999999999999999999886433 3467888877654321 1
Q ss_pred HHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCC--------C
Q 014789 103 KEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVT--------S 174 (418)
Q Consensus 103 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~--------~ 174 (418)
..+ ++.. +...+... ...+.+.+... .+.+++|||+|.+....+..|..+++...... .
T Consensus 93 ~~l---~g~~-----~~~~~~~~-~~~~~~~~~~~----~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 93 SRL---IGAP-----PGYVGYEE-GGQLTEAVRRR----PYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHH---HCCC-----TTSTTTTT-CCHHHHHHHHC----SSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred HHh---cCCC-----Cccccccc-cchHHHHHHhC----CCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 111 1110 11111111 01233334332 35799999999998877778888776543211 3
Q ss_pred cEEEEEeccCC---------------Ch--------HHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCC
Q 014789 175 QAVVIGVSCRL---------------DA--------DQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLP 231 (418)
Q Consensus 175 ~~~lI~~s~~~---------------~~--------~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~ 231 (418)
++++|++||.. ++ ...+.+.+.+||. ..+.|.|++.+++.+|+...+.
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~-~~~~~~p~~~~~~~~i~~~~l~-------- 230 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLD-EIVVFRPLTKEQIRQIVEIQMS-------- 230 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCS-EEEECCCCCHHHHHHHHHHHTH--------
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCC-eEEEeCCCCHHHHHHHHHHHHH--------
Confidence 67799999873 22 3355677889996 5688999999999999998874
Q ss_pred hHHHHHHHHHHH-----HHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhc
Q 014789 232 HAYAVEFNKKIK-----NILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSY 278 (418)
Q Consensus 232 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~ 278 (418)
.++.... ..++++++..+....+...|++|.+.+++..++..
T Consensus 231 -----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~ 277 (311)
T 4fcw_A 231 -----YLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELET 277 (311)
T ss_dssp -----HHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHH
T ss_pred -----HHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHH
Confidence 2222211 12445545555544443468899888888876543
No 48
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.65 E-value=3.2e-15 Score=145.82 Aligned_cols=217 Identities=18% Similarity=0.253 Sum_probs=141.7
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.+.|.++.++++.+.+... .. ..+.+++|+||||||||++++.++..+. ..+++++|......
T Consensus 16 ~di~G~~~~~~~l~e~v~~l-~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~------~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFL-KDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN------VPFFHISGSDFVEL 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHH-HCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT------CCEEEEEGGGTTTC
T ss_pred HHhCCcHHHHHHHHHHHHHh-hChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC------CCeeeCCHHHHHHH
Confidence 46899999999988877653 32 2367899999999999999999998764 34577887665432
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc-----------hhHHHHHHh
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK-----------QRLLYSLLD 167 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~-----------~~~L~~l~~ 167 (418)
. ... .......+++.... ..|.||+|||+|.+.... ...+..|+.
T Consensus 89 ~--~g~------------------~~~~~r~lf~~A~~----~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~ 144 (476)
T 2ce7_A 89 F--VGV------------------GAARVRDLFAQAKA----HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLV 144 (476)
T ss_dssp C--TTH------------------HHHHHHHHHHHHHH----TCSEEEEEETGGGTCCC---------CHHHHHHHHHHH
T ss_pred H--hcc------------------cHHHHHHHHHHHHh----cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHH
Confidence 0 000 01112222333322 258999999999986542 235666665
Q ss_pred hhcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH
Q 014789 168 AMQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK 243 (418)
Q Consensus 168 ~~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 243 (418)
.... ...+++||++||.. +.+++.+.+ ||. +.+.+++|+.++..+|++..+.-. .+.
T Consensus 145 ~ld~~~~~~~viVIaaTn~~---~~Ld~allR~gRFd-~~i~i~~Pd~~~R~~Il~~~~~~~---~l~------------ 205 (476)
T 2ce7_A 145 EMDGFDSKEGIIVMAATNRP---DILDPALLRPGRFD-KKIVVDPPDMLGRKKILEIHTRNK---PLA------------ 205 (476)
T ss_dssp HHHHSCGGGTEEEEEEESCG---GGSCGGGGSTTSSC-EEEECCCCCHHHHHHHHHHHHTTS---CBC------------
T ss_pred HHhccCCCCCEEEEEecCCh---hhhchhhcccCcce-eEeecCCCCHHHHHHHHHHHHHhC---CCc------------
Confidence 5432 23579999999984 456777765 886 578999999999999998877511 110
Q ss_pred HHhCChhHHHHHHHHhccccCH-HHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccCC
Q 014789 244 NILADGRFKEIVNTLVNLDSTV-NHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSHR 300 (418)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~gd~-r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~~ 300 (418)
.+..+..+.. ...|.. +.+.++|..|...+. .+...|+.+|+..|+..+..
T Consensus 206 ---~~v~l~~la~---~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 206 ---EDVNLEIIAK---RTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp ---TTCCHHHHHH---TCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC-
T ss_pred ---chhhHHHHHH---hcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhc
Confidence 1111223222 234544 667777777665543 35678999999999887653
No 49
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.65 E-value=7.1e-15 Score=138.48 Aligned_cols=240 Identities=12% Similarity=0.145 Sum_probs=150.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
+.++|+++.++.+...+.. +.+++|+||||||||++++.+++.+.. .+++++|.....+..++.
T Consensus 27 ~~i~g~~~~~~~l~~~l~~------~~~vll~G~pGtGKT~la~~la~~~~~------~~~~i~~~~~~~~~~l~g---- 90 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICT------GGHILLEGVPGLAKTLSVNTLAKTMDL------DFHRIQFTPDLLPSDLIG---- 90 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHH------TCCEEEESCCCHHHHHHHHHHHHHTTC------CEEEEECCTTCCHHHHHE----
T ss_pred cceeCcHHHHHHHHHHHHc------CCeEEEECCCCCcHHHHHHHHHHHhCC------CeEEEecCCCCChhhcCC----
Confidence 3688999988887776543 458999999999999999999987753 246677755444322211
Q ss_pred HHHHhhhccccc-CCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhc--------cCCCcEEE
Q 014789 108 QLCMEHQLLFSK-MASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ--------SVTSQAVV 178 (418)
Q Consensus 108 ~l~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~--------~~~~~~~l 178 (418)
.. .+.. ...+. +... .-...|++|||+|.+....+..|...++... ..+.++.+
T Consensus 91 ----~~--~~~~~~~~~~---------~~~g--~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~v 153 (331)
T 2r44_A 91 ----TM--IYNQHKGNFE---------VKKG--PVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLV 153 (331)
T ss_dssp ----EE--EEETTTTEEE---------EEEC--TTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEE
T ss_pred ----ce--eecCCCCceE---------eccC--cccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEE
Confidence 00 0000 00000 0000 0012599999999998877777777766432 12356788
Q ss_pred EEeccCCChHH--HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCC----CCCCChHHHHHHHHHHHHHhCChhHH
Q 014789 179 IGVSCRLDADQ--LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPV----DSSLPHAYAVEFNKKIKNILADGRFK 252 (418)
Q Consensus 179 I~~s~~~~~~~--~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (418)
|+++|+.+... .+++++.+||. ..+.+++++.++..+|++.++.... ...+....+........++.-++.+.
T Consensus 154 iat~np~~~~~~~~l~~~l~~Rf~-~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~ 232 (331)
T 2r44_A 154 LATQNPVEQEGTYPLPEAQVDRFM-MKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLE 232 (331)
T ss_dssp EEEECTTCCSCCCCCCHHHHTTSS-EEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHH
T ss_pred EEecCCCcccCcccCCHHHHhhee-EEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHH
Confidence 88888765322 26789999995 4589999999999999999876321 11223333333333333332334444
Q ss_pred HHHHHHhc---c---------------ccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccCCC
Q 014789 253 EIVNTLVN---L---------------DSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSHRQ 301 (418)
Q Consensus 253 ~~~~~~~~---~---------------~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~~~ 301 (418)
..+..++. . ..++|.++.+++.|...|. .+...|+.+||.+++..+...
T Consensus 233 ~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~ 300 (331)
T 2r44_A 233 KYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNH 300 (331)
T ss_dssp HHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHh
Confidence 44433321 1 2279999999988776654 367789999999998776543
No 50
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.65 E-value=6.4e-17 Score=147.85 Aligned_cols=220 Identities=16% Similarity=0.242 Sum_probs=136.9
Q ss_pred CCCCChhhhHHHHHHHHHHHH--------hcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSV--------TEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~--------~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
+.++|.++..+.+.+.+.... ....+.+++|+||||||||++++.+++.+... +++++|.......
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~------~~~v~~~~~~~~~ 84 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVP------FFSMGGSSFIEMF 84 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCC------CCCCCSCTTTTSC
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC------EEEechHHHHHhh
Confidence 578999999999988776421 11236679999999999999999999987532 3556665433210
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc------------hhHHHHHHh
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK------------QRLLYSLLD 167 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~------------~~~L~~l~~ 167 (418)
.. ........ +++.... ..+.||+|||+|.+.... ...+..++.
T Consensus 85 ----------~~------~~~~~~~~----~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~ 140 (268)
T 2r62_A 85 ----------VG------LGASRVRD----LFETAKK----QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLA 140 (268)
T ss_dssp ----------SS------SCSSSSST----THHHHHH----SCSCEEEESCGGGTTC----------CCCSCSSTTTTTT
T ss_pred ----------cc------hHHHHHHH----HHHHHHh----cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHH
Confidence 00 00001111 1222222 146799999999997532 123444444
Q ss_pred hhcc---CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc-CCCCCCCChHHHHHHHHH
Q 014789 168 AMQS---VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS-LPVDSSLPHAYAVEFNKK 241 (418)
Q Consensus 168 ~~~~---~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~-~~~~~~~~~~~~~~~~~~ 241 (418)
.... ...++++|+++|..+ .+++.+.+ ||. ..+.|++++.++..++++.++. .+...
T Consensus 141 ~l~~~~~~~~~v~vi~ttn~~~---~ld~~l~r~~Rf~-~~i~i~~p~~~~r~~il~~~~~~~~~~~------------- 203 (268)
T 2r62_A 141 EMDGFGSENAPVIVLAATNRPE---ILDPALMRPGRFD-RQVLVDKPDFNGRVEILKVHIKGVKLAN------------- 203 (268)
T ss_dssp TTTCSSCSCSCCEEEECBSCCT---TSCGGGGSSSSSC-CCCBCCCCCTTTHHHHHHHHTSSSCCCS-------------
T ss_pred HhhCcccCCCCEEEEEecCCch---hcCHhHcCCCCCC-eEEEecCcCHHHHHHHHHHHHhcCCCCC-------------
Confidence 3332 234689999998854 46677777 776 5689999999999999998875 11111
Q ss_pred HHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccc-cCCCCChhhHHHHHhccCCCc
Q 014789 242 IKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDL-ESGFLSFENFKTALSNSHRQP 302 (418)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~-~~~~it~~~v~~a~~~~~~~~ 302 (418)
+..+..+.....+. ..|.+.+++..|...+.. +...|+.+++.+|+..+.+..
T Consensus 204 ------~~~~~~la~~~~g~--~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~ 257 (268)
T 2r62_A 204 ------DVNLQEVAKLTAGL--AGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAGL 257 (268)
T ss_dssp ------SCCTTTTTSSSCSS--CHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTCCCCC
T ss_pred ------ccCHHHHHHHcCCC--CHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHhhcc
Confidence 11111122211122 346777788877766543 467899999999888766544
No 51
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.64 E-value=7.5e-16 Score=158.28 Aligned_cols=161 Identities=19% Similarity=0.267 Sum_probs=115.3
Q ss_pred CCCChhhhHHHHHHHHHHHHhcC---------CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEA---------CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~---------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
.+.|.++++++|.+.+.-.+..+ .+.++|||||||||||+++++++.++. ..++.++|....+.
T Consensus 205 dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg------~~~~~v~~~~l~sk- 277 (806)
T 3cf2_A 205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLINGPEIMSK- 277 (806)
T ss_dssp GCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTT------CEEEEEEHHHHHSS-
T ss_pred hhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC------CeEEEEEhHHhhcc-
Confidence 47889999999999887655442 377899999999999999999998765 45677887442211
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--------chhHHHHHHhhhcc
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--------KQRLLYSLLDAMQS 171 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--------~~~~L~~l~~~~~~ 171 (418)
..+..+..+..+++... ...|.||+|||+|.+... ...++..|+.++..
T Consensus 278 -------------------~~gese~~lr~lF~~A~----~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg 334 (806)
T 3cf2_A 278 -------------------LAGESESNLRKAFEEAE----KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG 334 (806)
T ss_dssp -------------------CTTHHHHHHHHHHHHHT----TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHH
T ss_pred -------------------cchHHHHHHHHHHHHHH----HcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhc
Confidence 00111122223333322 346899999999999864 22455666655443
Q ss_pred --CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 172 --VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 172 --~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
...+++||++||+. +.+++.+++ ||. +.|.+++++.++..+|++..+.
T Consensus 335 ~~~~~~V~VIaaTN~~---d~LD~ALrR~GRFd-~~I~i~~Pd~~~R~~IL~~~l~ 386 (806)
T 3cf2_A 335 LKQRAHVIVMAATNRP---NSIDPALRRFGRFD-REVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp CCGGGCEEEEEECSST---TTSCTTTTSTTSSC-EEEECCCCCHHHHHHHHHHTCS
T ss_pred ccccCCEEEEEecCCh---hhcCHHHhCCcccc-eEEecCCCCHHHHHHHHHHHhc
Confidence 23579999999994 467888887 886 6799999999999999998765
No 52
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.62 E-value=1.6e-15 Score=138.35 Aligned_cols=226 Identities=12% Similarity=0.106 Sum_probs=135.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
+.++|++..+..+.+.+..... .+.+++|+||||||||++++.+++.+.... ..++++||...... .+. .
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~--~~~~vll~G~~GtGKt~la~~i~~~~~~~~---~~~~~v~~~~~~~~--~~~---~ 75 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP--LDKPVLIIGERGTGKELIASRLHYLSSRWQ---GPFISLNCAALNEN--LLD---S 75 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT--SCSCEEEECCTTSCHHHHHHHHHHTSTTTT---SCEEEEEGGGSCHH--HHH---H
T ss_pred ccceeCCHHHHHHHHHHHHHhC--CCCCEEEECCCCCcHHHHHHHHHHhcCccC---CCeEEEecCCCChh--HHH---H
Confidence 4678999999999988887654 357899999999999999999988765432 45688999776421 111 1
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEEE
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVVI 179 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~lI 179 (418)
.+..... +.+..........+... ...+|+|||+|.+....|..|..+++.... ...++.+|
T Consensus 76 ~l~g~~~------~~~~g~~~~~~~~l~~a----~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI 145 (265)
T 2bjv_A 76 ELFGHEA------GAFTGAQKRHPGRFERA----DGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLV 145 (265)
T ss_dssp HHHCCC---------------CCCCHHHHT----TTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEE
T ss_pred HhcCCcc------cccccccccccchhhhc----CCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEE
Confidence 1211000 00000000000111111 235899999999988777777777764321 12467889
Q ss_pred EeccCCChHHH-----HHHHhhcccCceEEEecCCCH--HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH----HhCC
Q 014789 180 GVSCRLDADQL-----LEKRVRSRFSHRKLLFLPPSK--EDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKN----ILAD 248 (418)
Q Consensus 180 ~~s~~~~~~~~-----l~~~v~sr~~~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~ 248 (418)
+++|.. ..+. +.+.+.+||....+.++|++. +++..++.+.+. .++..... .+++
T Consensus 146 ~atn~~-~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~-------------~~~~~~~~~~~~~~~~ 211 (265)
T 2bjv_A 146 CATNAD-LPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAI-------------QMCREIKLPLFPGFTE 211 (265)
T ss_dssp EEESSC-HHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHH-------------HHHHHTTCSSCCCBCH
T ss_pred EecCcC-HHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHH-------------HHHHHhCCCcccCcCH
Confidence 999873 2332 457788899655688999975 778877776653 11111100 1333
Q ss_pred hhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhH
Q 014789 249 GRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENF 291 (418)
Q Consensus 249 ~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v 291 (418)
+++..+.. +...||+|.+.+++..++..+. ...|+.+|+
T Consensus 212 ~a~~~L~~--~~~~gn~reL~~~l~~~~~~~~--~~~i~~~~l 250 (265)
T 2bjv_A 212 RARETLLN--YRWPGNIRELKNVVERSVYRHG--TSDYPLDDI 250 (265)
T ss_dssp HHHHHHHH--SCCTTHHHHHHHHHHHHHHHHC--CSSSCBCCC
T ss_pred HHHHHHHh--CCCCCCHHHHHHHHHHHHHhCC--CCcCcHHHc
Confidence 33333322 2347999999999998765543 345766665
No 53
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.62 E-value=8.8e-16 Score=132.46 Aligned_cols=159 Identities=18% Similarity=0.226 Sum_probs=103.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCC----CCeEEEEEccccCCChHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYP----DTISVIKLNGLLHSDDCCAFK 103 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~----~~~~~v~in~~~~~~~~~~~~ 103 (418)
+.++||+++++.+.+.+ ....+.+++|+||||||||++++.+++.+..... ....+++++|...........
T Consensus 22 ~~~~g~~~~~~~l~~~l----~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVL----QRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRG 97 (195)
T ss_dssp CCCCSCHHHHHHHHHHH----TSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHH
T ss_pred cccccchHHHHHHHHHH----hcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccc
Confidence 46899999999888775 3356788999999999999999999998865320 125567777633210000000
Q ss_pred HHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--------chhHHHHHHhhhccCCCc
Q 014789 104 EIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--------KQRLLYSLLDAMQSVTSQ 175 (418)
Q Consensus 104 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--------~~~~L~~l~~~~~~~~~~ 175 (418)
........+.+.+.. .+.+.||+|||+|.+... .+..+..+++ ..+
T Consensus 98 ------------------~~~~~~~~~~~~~~~---~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-----~~~ 151 (195)
T 1jbk_A 98 ------------------EFEERLKGVLNDLAK---QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-----RGE 151 (195)
T ss_dssp ------------------HHHHHHHHHHHHHHH---STTTEEEEEETGGGGTT------CCCCHHHHHHHHH-----TTS
T ss_pred ------------------cHHHHHHHHHHHHhh---cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-----cCC
Confidence 011112222232222 235789999999999643 2445544443 256
Q ss_pred EEEEEeccCCChHH--HHHHHhhcccCceEEEecCCCHHHHHHHH
Q 014789 176 AVVIGVSCRLDADQ--LLEKRVRSRFSHRKLLFLPPSKEDMQRLL 218 (418)
Q Consensus 176 ~~lI~~s~~~~~~~--~l~~~v~sr~~~~~i~~~~~~~~e~~~il 218 (418)
+.+|+++|..++.. .+++++.+||. .+.+++++.++..+|+
T Consensus 152 ~~~i~~~~~~~~~~~~~~~~~l~~r~~--~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 152 LHCVGATTLDEYRQYIEKDAALERRFQ--KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CCEEEEECHHHHHHHTTTCHHHHTTEE--EEECCCCCHHHHHTTC
T ss_pred eEEEEeCCHHHHHHHHhcCHHHHHHhc--eeecCCCCHHHHHHHh
Confidence 77888888754333 34688999995 6899999999988765
No 54
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.62 E-value=8.7e-14 Score=131.77 Aligned_cols=297 Identities=15% Similarity=0.089 Sum_probs=160.8
Q ss_pred cCCCC-ccCCCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCC--
Q 014789 20 CDPNF-VVKHLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHS-- 96 (418)
Q Consensus 20 ~~~~~-~~~~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~-- 96 (418)
|+|.. ..++.++||+++++.|.+.+.. ++.++|+||+|+|||++++.+++... +++++|....
T Consensus 3 F~~~~~~~~~~~~gR~~el~~L~~~l~~------~~~v~i~G~~G~GKT~Ll~~~~~~~~--------~~~~~~~~~~~~ 68 (350)
T 2qen_A 3 FDLRPKTRREDIFDREEESRKLEESLEN------YPLTLLLGIRRVGKSSLLRAFLNERP--------GILIDCRELYAE 68 (350)
T ss_dssp SCCSCCCSGGGSCSCHHHHHHHHHHHHH------CSEEEEECCTTSSHHHHHHHHHHHSS--------EEEEEHHHHHHT
T ss_pred CCCCCCCChHhcCChHHHHHHHHHHHhc------CCeEEEECCCcCCHHHHHHHHHHHcC--------cEEEEeeccccc
Confidence 55543 2236799999999999988754 26899999999999999999987641 5778875542
Q ss_pred ----ChHHHHHHHHHHHHHh------h-------hcccc-cCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhh--
Q 014789 97 ----DDCCAFKEIARQLCME------H-------QLLFS-KMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQ-- 156 (418)
Q Consensus 97 ----~~~~~~~~i~~~l~~~------~-------~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~-- 156 (418)
+...++..+...+... . +...+ ......+..+.+.+..... .+++|+|||+|++..
T Consensus 69 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~vlvlDe~~~~~~~~ 144 (350)
T 2qen_A 69 RGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEEL----GEFIVAFDEAQYLRFYG 144 (350)
T ss_dssp TTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHH----SCEEEEEETGGGGGGBT
T ss_pred ccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhcc----CCEEEEEeCHHHHhccC
Confidence 4455566665544320 0 00000 1123344444444433321 389999999999975
Q ss_pred --cchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHH--HH----hhcccCceEEEecCCCHHHHHHHHHHHhcCCCCC
Q 014789 157 --GKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLE--KR----VRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDS 228 (418)
Q Consensus 157 --~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~--~~----v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~ 228 (418)
.....+..+-...+.. .++.+|.+++...+...+. .. +..|.. ..+.+.|++.++..+++...+.... .
T Consensus 145 ~~~~~~~~~~L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~-~~i~l~pl~~~e~~~~l~~~~~~~~-~ 221 (350)
T 2qen_A 145 SRGGKELLALFAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIA-GEVLVKPFDKDTSVEFLKRGFREVN-L 221 (350)
T ss_dssp TTTTHHHHHHHHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCC-EEEECCCCCHHHHHHHHHHHHHTTT-C
T ss_pred ccchhhHHHHHHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCcc-ceeeCCCCCHHHHHHHHHHHHHHcC-C
Confidence 2223333332222221 3566776665432212110 11 222322 4789999999999999988754110 0
Q ss_pred CCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhhc
Q 014789 229 SLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECIK 308 (418)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l~ 308 (418)
.+ +++.+..+... ..|++..+..++...... . ....+..+.+..+... ....+.
T Consensus 222 ~~----------------~~~~~~~i~~~---tgG~P~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~-----~~~~l~ 275 (350)
T 2qen_A 222 DV----------------PENEIEEAVEL---LDGIPGWLVVFGVEYLRN-G-DFGRAMKRTLEVAKGL-----IMGELE 275 (350)
T ss_dssp CC----------------CHHHHHHHHHH---HTTCHHHHHHHHHHHHHH-C-CHHHHHHHHHHHHHHH-----HHHHHH
T ss_pred CC----------------CHHHHHHHHHH---hCCCHHHHHHHHHHHhcc-c-cHhHHHHHHHHHHHHH-----HHHHHH
Confidence 01 12222222221 347776655554332111 0 0000111111111111 112233
Q ss_pred CC---ChHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhCCcceee
Q 014789 309 DC---SILELYILVCLKRLEVKEQNSYNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFEHLLQRELICFT 375 (418)
Q Consensus 309 ~L---~~~~~~iL~a~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~ 375 (418)
.+ +..++.+|.+++. + .++..++.+.+.. ..+ ..+...+..+++.|.+.|+|...
T Consensus 276 ~l~~~~~~~~~~l~~la~----g--~~~~~~l~~~~~~---~~~---~~~~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 276 ELRRRSPRYVDILRAIAL----G--YNRWSLIRDYLAV---KGT---KIPEPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp HHHHHCHHHHHHHHHHHT----T--CCSHHHHHHHHHH---TTC---CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhCChhHHHHHHHHHh----C--CCCHHHHHHHHHH---HhC---CCCHHHHHHHHHHHHhCCCEEec
Confidence 33 6788888888774 2 3566666554332 211 23455667899999999998753
No 55
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.61 E-value=1.6e-13 Score=130.27 Aligned_cols=289 Identities=14% Similarity=0.078 Sum_probs=159.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccC-----CChHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLH-----SDDCCAF 102 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~-----~~~~~~~ 102 (418)
+.++||++|++.|.+ +.. +.++|+||+|+|||++++.+++.+.. .+++++|... .+...++
T Consensus 13 ~~~~gR~~el~~L~~-l~~-------~~v~i~G~~G~GKT~L~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-------PITLVLGLRRTGKSSIIKIGINELNL------PYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-------SEEEEEESTTSSHHHHHHHHHHHHTC------CEEEEEGGGGTTCSCCCHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC-------CcEEEECCCCCCHHHHHHHHHHhcCC------CEEEEEchhhccccCCCHHHHH
Confidence 679999999999887 643 58999999999999999999987642 2467777653 3455566
Q ss_pred HHHHHHHHHhh--------------hcccccC-CC------hHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-ch-
Q 014789 103 KEIARQLCMEH--------------QLLFSKM-AS------FDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-KQ- 159 (418)
Q Consensus 103 ~~i~~~l~~~~--------------~~~~~~~-~~------~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-~~- 159 (418)
..+...+.... +.+.+.. .. .......+.+.+..... ++++|+|||+|++... ..
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK--DNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS--SCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC--CCeEEEEECHHHhhccCchh
Confidence 66666553210 0011000 00 11234455555655432 3899999999999752 22
Q ss_pred --hHHHHHHhhhccCCCcEEEEEeccCCChHHHHH--HH----hhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCC
Q 014789 160 --RLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLE--KR----VRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLP 231 (418)
Q Consensus 160 --~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~--~~----v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~ 231 (418)
..|..+.+. ..++.+|++++.......+. .. +..|.. ..+.+.|++.++..+++...+..
T Consensus 157 ~~~~l~~~~~~----~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~-~~i~l~~l~~~e~~~~l~~~~~~------- 224 (357)
T 2fna_A 157 LLPALAYAYDN----LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAF-STVELKPFSREEAIEFLRRGFQE------- 224 (357)
T ss_dssp CHHHHHHHHHH----CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCC-EEEEECCCCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHc----CCCeEEEEEcCchHHHHHHHhccCCCCccccCcc-ceeecCCCCHHHHHHHHHHHHHH-------
Confidence 233333332 13567777776532212110 11 122322 47899999999999999887530
Q ss_pred hHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHHHhccCCCchhhhh---c
Q 014789 232 HAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTALSNSHRQPKLECI---K 308 (418)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a~~~~~~~~~~~~l---~ 308 (418)
.-...+....+.. ...|++..+..++...... . .......+.+..+...+ .....+.+ .
T Consensus 225 ------------~~~~~~~~~~i~~---~t~G~P~~l~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~ 286 (357)
T 2fna_A 225 ------------ADIDFKDYEVVYE---KIGGIPGWLTYFGFIYLDN-K-NLDFAINQTLEYAKKLI-LKEFENFLHGRE 286 (357)
T ss_dssp ------------HTCCCCCHHHHHH---HHCSCHHHHHHHHHHHHHH-C-CHHHHHHHHHHHHHHHH-HHHHHHHHTTCG
T ss_pred ------------cCCCCCcHHHHHH---HhCCCHHHHHHHHHHHccc-c-chHHHHHHHHHHHHHHH-HHHHHHHhhccc
Confidence 0011111222222 1357777665555432211 0 00001111111111111 11111111 1
Q ss_pred CCChHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhCCccee
Q 014789 309 DCSILELYILVCLKRLEVKEQNSYNFNSVMKEYKSIHDSFQTSDYYSRNVCLRAFEHLLQRELICF 374 (418)
Q Consensus 309 ~L~~~~~~iL~a~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~ 374 (418)
.++..++.+|.+++. + . +...+.+.+...+. . ..+...+..+++.|.+.|+|..
T Consensus 287 ~l~~~~~~~l~~la~----g--~-~~~~l~~~~~~~~g---~--~~~~~~~~~~L~~L~~~gli~~ 340 (357)
T 2fna_A 287 IARKRYLNIMRTLSK----C--G-KWSDVKRALELEEG---I--EISDSEIYNYLTQLTKHSWIIK 340 (357)
T ss_dssp GGHHHHHHHHHHHTT----C--B-CHHHHHHHHHHHHC---S--CCCHHHHHHHHHHHHHTTSEEE
T ss_pred cccHHHHHHHHHHHc----C--C-CHHHHHHHHHHhcC---C--CCCHHHHHHHHHHHHhCCCEEe
Confidence 688899999988874 2 2 67777654443332 1 1344556689999999999875
No 56
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.60 E-value=1.3e-14 Score=136.63 Aligned_cols=198 Identities=14% Similarity=0.120 Sum_probs=119.1
Q ss_pred ChhhhHHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHH
Q 014789 32 SPDSNYSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLC 110 (418)
Q Consensus 32 gr~~e~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~ 110 (418)
-.++..+.+.. .+..+. ++.++++||+|+|||++++.+++.+....+... ..|..+. ..+.+...-.
T Consensus 6 w~~~~~~~l~~----~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~----~~c~~c~----~c~~~~~~~~ 73 (334)
T 1a5t_A 6 WLRPDFEKLVA----SYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGH----KSCGHCR----GCQLMQAGTH 73 (334)
T ss_dssp GGHHHHHHHHH----HHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTT----BCCSCSH----HHHHHHHTCC
T ss_pred chHHHHHHHHH----HHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCC----CCCCCCH----HHHHHhcCCC
Confidence 34455554444 445544 667999999999999999999999875431100 0111111 1111111000
Q ss_pred Hhhh-cccc---cCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 111 MEHQ-LLFS---KMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 111 ~~~~-~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
.... ..+. ...+.++ .+.+.+.+......+.+.|+||||+|.+....++.|...++. ...++.+|++++.
T Consensus 74 ~d~~~~~~~~~~~~~~i~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEe---p~~~~~~Il~t~~-- 147 (334)
T 1a5t_A 74 PDYYTLAPEKGKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEE---PPAETWFFLATRE-- 147 (334)
T ss_dssp TTEEEECCCTTCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTS---CCTTEEEEEEESC--
T ss_pred CCEEEEeccccCCCCCHHH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcC---CCCCeEEEEEeCC--
Confidence 0000 0010 1112222 233444444433345789999999999987656666555544 3467888888877
Q ss_pred hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHH
Q 014789 187 ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVN 266 (418)
Q Consensus 187 ~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r 266 (418)
++.+.+.++||+ ..+.|+|++.+++.+++..+.. + +++++..+++ . ..|++|
T Consensus 148 -~~~l~~ti~SRc--~~~~~~~~~~~~~~~~L~~~~~------~----------------~~~~~~~l~~-~--s~G~~r 199 (334)
T 1a5t_A 148 -PERLLATLRSRC--RLHYLAPPPEQYAVTWLSREVT------M----------------SQDALLAALR-L--SAGSPG 199 (334)
T ss_dssp -GGGSCHHHHTTS--EEEECCCCCHHHHHHHHHHHCC------C----------------CHHHHHHHHH-H--TTTCHH
T ss_pred -hHhCcHHHhhcc--eeeeCCCCCHHHHHHHHHHhcC------C----------------CHHHHHHHHH-H--cCCCHH
Confidence 456789999999 5799999999999999998852 1 2223333332 2 369999
Q ss_pred HHHHHHHHH
Q 014789 267 HLLRFLFLA 275 (418)
Q Consensus 267 ~~~~~l~~a 275 (418)
.+++++...
T Consensus 200 ~a~~~l~~~ 208 (334)
T 1a5t_A 200 AALALFQGD 208 (334)
T ss_dssp HHHHTTSSH
T ss_pred HHHHHhccc
Confidence 998887543
No 57
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.60 E-value=2.4e-15 Score=139.59 Aligned_cols=228 Identities=13% Similarity=0.148 Sum_probs=141.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
+.++|++..+..+.+.+..... ...+++|+||||||||++++.+.+...... ..++.+||...... .+ .+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~--~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~---~~~v~v~~~~~~~~--l~---~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP--SDATVLIHGDSGTGKELVARALHACSARSD---RPLVTLNCAALNES--LL---ES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS--TTSCEEEESCTTSCHHHHHHHHHHHSSCSS---SCCCEEECSSCCHH--HH---HH
T ss_pred CCcEECCHHHHHHHHHHHHHhC--CCCcEEEECCCCchHHHHHHHHHHhCcccC---CCeEEEeCCCCChH--HH---HH
Confidence 4689999999999999888643 467899999999999999999988654332 34578899765431 22 12
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEEE
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVVI 179 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~lI 179 (418)
.+.......+.+... .. ...+... ...+|+|||+|.+....|..|..+++.... ...++.+|
T Consensus 72 ~lfg~~~g~~tg~~~--~~----~g~~~~a----~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI 141 (304)
T 1ojl_A 72 ELFGHEKGAFTGADK--RR----EGRFVEA----DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLI 141 (304)
T ss_dssp HHTCCCSSCCC---C--CC----CCHHHHH----TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEE
T ss_pred HhcCccccccCchhh--hh----cCHHHhc----CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEE
Confidence 221111000100000 00 0111111 124799999999988777777776654321 12467899
Q ss_pred EeccCCChHHH-----HHHHhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH---HHhCCh
Q 014789 180 GVSCRLDADQL-----LEKRVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK---NILADG 249 (418)
Q Consensus 180 ~~s~~~~~~~~-----l~~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 249 (418)
++||.. +.+. +.+.+.+||....|.+||+. .+++..++.+.+. .++.... ..++++
T Consensus 142 ~atn~~-l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~-------------~~~~~~~~~~~~~s~~ 207 (304)
T 1ojl_A 142 AATHRD-LAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLR-------------RFAERNRKVVKGFTPQ 207 (304)
T ss_dssp EEESSC-HHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHH-------------HHHHHTTCCCCCBCHH
T ss_pred EecCcc-HHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHH-------------HHHHHhccCccCCCHH
Confidence 999874 3333 34567889876678899998 6788888877653 1111100 013333
Q ss_pred hHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHH
Q 014789 250 RFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKT 293 (418)
Q Consensus 250 ~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~ 293 (418)
++..+.. +...||+|.+.+++..++..+. ...|+.+|+..
T Consensus 208 a~~~L~~--~~wpGnvReL~~~l~~~~~~~~--~~~i~~~~l~~ 247 (304)
T 1ojl_A 208 AMDLLIH--YDWPGNIRELENAIERAVVLLT--GEYISERELPL 247 (304)
T ss_dssp HHHHHHH--CCCSSHHHHHHHHHHHHHHHCC--SSSBCGGGSCG
T ss_pred HHHHHHc--CCCCCCHHHHHHHHHHHHHhCC--CCcccHHhhhh
Confidence 3333332 2347999999999999876643 35688777643
No 58
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.59 E-value=2.3e-15 Score=144.40 Aligned_cols=236 Identities=15% Similarity=0.111 Sum_probs=137.1
Q ss_pred CCCCChhhhHHHHHHHHHHHHh--------------------------cCCCceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVT--------------------------EACNNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~--------------------------~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
+.++|.+...+.|...+..... ...+.+++|+||||||||++++.+++.+.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~--- 97 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD--- 97 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT---
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC---
Confidence 4578999999888877731111 12367899999999999999999998874
Q ss_pred CCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc----
Q 014789 82 PDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG---- 157 (418)
Q Consensus 82 ~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~---- 157 (418)
..++.++|...... ..... .....+..+.......-....+.||+|||+|.+...
T Consensus 98 ---~~~~~~~~~~~~~~-~~~g~-----------------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~ 156 (376)
T 1um8_A 98 ---IPIAISDATSLTEA-GYVGE-----------------DVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENR 156 (376)
T ss_dssp ---CCEEEEEGGGCC--------------------------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-------
T ss_pred ---CCEEEecchhhhhc-CcCCc-----------------cHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCC
Confidence 33577787665321 00000 000111111111000000013569999999999876
Q ss_pred ----------chhHHHHHHhhhc------------------cCCCcEEEEEeccCCChHH--------------------
Q 014789 158 ----------KQRLLYSLLDAMQ------------------SVTSQAVVIGVSCRLDADQ-------------------- 189 (418)
Q Consensus 158 ----------~~~~L~~l~~~~~------------------~~~~~~~lI~~s~~~~~~~-------------------- 189 (418)
.+..|..+++... ....++.+|+++|...+..
T Consensus 157 ~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~ 236 (376)
T 1um8_A 157 SITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSK 236 (376)
T ss_dssp -------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCT
T ss_pred ceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhc
Confidence 5667777776321 0124567888776321111
Q ss_pred ------------------HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH-----HHh
Q 014789 190 ------------------LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK-----NIL 246 (418)
Q Consensus 190 ------------------~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~ 246 (418)
.+.+.+.+|+. ..+.|+|++.+++.+|+...+. .+...|+.... -.+
T Consensus 237 ~~~~~~~~~~~~~~l~~~~~~p~l~~R~~-~~i~~~~l~~~~l~~i~~~~~~---------~~~~~~~~~~~~~~~~~~~ 306 (376)
T 1um8_A 237 KEQEAILHLVQTHDLVTYGLIPELIGRLP-VLSTLDSISLEAMVDILQKPKN---------ALIKQYQQLFKMDEVDLIF 306 (376)
T ss_dssp TTTTTSGGGCCHHHHHHTTCCHHHHTTCC-EEEECCCCCHHHHHHHHHSSTT---------CHHHHHHHHHHTTTCEEEE
T ss_pred cchhHHHhhcCHHHHhhcCCChHHhcCCC-ceeeccCCCHHHHHHHHhhhHH---------HHHHHHHHHHhhcCceEEE
Confidence 23577788886 5699999999999999975332 12223332221 124
Q ss_pred CChhHHHHHHHHhccccCHHHHHHHHHHHhhcc----cc---cCCCCChhhHHHHHhc
Q 014789 247 ADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYM----DL---ESGFLSFENFKTALSN 297 (418)
Q Consensus 247 ~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a----~~---~~~~it~~~v~~a~~~ 297 (418)
+++++..++...+...|++|.+.+++..++..+ .. +...|+.++|.++...
T Consensus 307 ~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 307 EEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEP 364 (376)
T ss_dssp CHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSCC
T ss_pred CHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCCCc
Confidence 555566666655555689999888887765432 11 2225888888765443
No 59
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.58 E-value=2.1e-14 Score=140.89 Aligned_cols=217 Identities=18% Similarity=0.231 Sum_probs=140.8
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcC---------CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEA---------CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~---------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.++|.++....+.+.+... ... .+.+++|+||||||||++++.++..+. ..+++++|......
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l-~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~------~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITASGSDFVEM 103 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHH-HCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT------CCEEEEEGGGGTSS
T ss_pred HHcCCcHHHHHHHHHHHHHh-hchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC------CCEEEEehhHHHHh
Confidence 56899999988888876653 321 256799999999999999999998764 33577888654321
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc-----------hhHHHHHHh
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK-----------QRLLYSLLD 167 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~-----------~~~L~~l~~ 167 (418)
. ... ....+...+.... ...|.+++|||+|.+.... ...+..++.
T Consensus 104 ~--~g~---------------------~~~~v~~lfq~a~-~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~ 159 (499)
T 2dhr_A 104 F--VGV---------------------GAARVRDLFETAK-RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV 159 (499)
T ss_dssp C--TTH---------------------HHHHHHHHTTTSS-SSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH
T ss_pred h--hhh---------------------HHHHHHHHHHHHH-hcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH
Confidence 0 000 0111222333221 2357899999999986431 245555555
Q ss_pred hhcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH
Q 014789 168 AMQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK 243 (418)
Q Consensus 168 ~~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 243 (418)
.... ....+++++++|..+ .+++.+.+ ||. +.+.+++++.++..+|++..+.- ..+
T Consensus 160 ~Ldg~~~~~~viviAatn~p~---~LD~aLlr~gRfd-r~i~i~~Pd~~~R~~IL~~~~~~---~~l------------- 219 (499)
T 2dhr_A 160 EMDGFEKDTAIVVMAATNRPD---ILDPALLRPGRFD-RQIAIDAPDVKGREQILRIHARG---KPL------------- 219 (499)
T ss_dssp HGGGCCSSCCCEEEECCSCGG---GSCTTTSSTTSSC-CEEECCCCCHHHHHHHHHHTTSS---SCC-------------
T ss_pred HhcccccCccEEEEEecCChh---hcCcccccccccc-eEEecCCCCHHHHHHHHHHHHhc---CCC-------------
Confidence 4432 235678889998854 47888887 665 67999999999999999887641 011
Q ss_pred HHhCChhHHHHHHHHhccccCH-HHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccCC
Q 014789 244 NILADGRFKEIVNTLVNLDSTV-NHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSHR 300 (418)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~gd~-r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~~ 300 (418)
.++.....+.. ...|.. |.+.+++..|...+. .+...|+.+|+.+|+..+..
T Consensus 220 ---~~dv~l~~lA~--~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~ 273 (499)
T 2dhr_A 220 ---AEDVDLALLAK--RTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMM 273 (499)
T ss_dssp ---CCSSTTHHHHT--TSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTT
T ss_pred ---ChHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhc
Confidence 11111112221 234655 777788887766554 35568999999999987643
No 60
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.55 E-value=1.9e-15 Score=155.24 Aligned_cols=162 Identities=18% Similarity=0.305 Sum_probs=105.3
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.+.|.++..+.|.+.+...+.. ..+..+|||||||||||+++++++.++.. .++.+++....+.
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~------~f~~v~~~~l~s~ 550 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA------NFISIKGPELLTM 550 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC------EEEECCHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC------ceEEeccchhhcc
Confidence 34677888888877766543322 23678999999999999999999988753 3455543221110
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----------chhHHHHHHh
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----------KQRLLYSLLD 167 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----------~~~~L~~l~~ 167 (418)
-.+..+.....+++..+.. .|.||+|||+|.+... ...++..|+.
T Consensus 551 --------------------~vGese~~vr~lF~~Ar~~----~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~ 606 (806)
T 3cf2_A 551 --------------------WFGESEANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILT 606 (806)
T ss_dssp --------------------TCSSCHHHHHHHHHHHHTT----CSEEEECSCGGGCC--------------CHHHHHHHH
T ss_pred --------------------ccchHHHHHHHHHHHHHHc----CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHH
Confidence 0012233445555555443 6899999999999753 1245666666
Q ss_pred hhcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 168 AMQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 168 ~~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
++.. ...+++|||+||+. +.|++++.+ ||. +.|++++++.++..+|++..+.
T Consensus 607 ~mdg~~~~~~V~vi~aTN~p---~~lD~AllRpgRfd-~~i~v~lPd~~~R~~il~~~l~ 662 (806)
T 3cf2_A 607 EMDGMSTKKNVFIIGATNRP---DIIDPAILRPGRLD-QLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp HHHSSCSSSSEEEECC-CCS---SSSCHHHHSTTTSC-CEEEC-----CHHHHTTTTTSS
T ss_pred HHhCCCCCCCEEEEEeCCCc---hhCCHhHcCCCcce-EEEEECCcCHHHHHHHHHHHhc
Confidence 5543 34579999999985 467888877 887 6789999999999999988775
No 61
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.55 E-value=6.9e-14 Score=126.56 Aligned_cols=217 Identities=18% Similarity=0.227 Sum_probs=129.4
Q ss_pred CCCccCCCCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcc
Q 014789 22 PNFVVKHLSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNG 92 (418)
Q Consensus 22 ~~~~~~~~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~ 92 (418)
|.+.. +.++|.++...++....... .. ..+.+++|+||||||||++++.++..+. ...+.+++
T Consensus 11 ~~~~~-~~i~g~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~------~~~i~~~~ 82 (254)
T 1ixz_A 11 PKVTF-KDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITASG 82 (254)
T ss_dssp CSCCG-GGCCSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEH
T ss_pred CCCCH-HHhCCcHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC------CCEEEeeH
Confidence 33444 46889888887777765442 21 1245699999999999999999998764 22466665
Q ss_pred ccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc-----------hhH
Q 014789 93 LLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK-----------QRL 161 (418)
Q Consensus 93 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~-----------~~~ 161 (418)
...... ... ........+++.... ..+.++++||+|.+.... ...
T Consensus 83 ~~~~~~--~~~------------------~~~~~i~~~~~~~~~----~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~ 138 (254)
T 1ixz_A 83 SDFVEM--FVG------------------VGAARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT 138 (254)
T ss_dssp HHHHHS--CTT------------------HHHHHHHHHHHHHTT----SSSEEEEEETHHHHHC---------CHHHHHH
T ss_pred HHHHHH--Hhh------------------HHHHHHHHHHHHHHh----cCCeEEEehhhhhhhcccCccccccchHHHHH
Confidence 321100 000 000111122222211 247899999999886431 223
Q ss_pred HHHHHhhhcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHH
Q 014789 162 LYSLLDAMQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVE 237 (418)
Q Consensus 162 L~~l~~~~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~ 237 (418)
+..++..... ....+++++++|.. +.+++.+.+ ||. +.+.+++++.++..+|++..+.- ..++
T Consensus 139 ~~~ll~~l~g~~~~~~~i~~a~t~~p---~~ld~~l~r~~rf~-~~i~i~~p~~~~r~~il~~~~~~---~~~~------ 205 (254)
T 1ixz_A 139 LNQLLVEMDGFEKDTAIVVMAATNRP---DILDPALLRPGRFD-RQIAIDAPDVKGREQILRIHARG---KPLA------ 205 (254)
T ss_dssp HHHHHHHHHTCCTTCCEEEEEEESCG---GGSCGGGGSTTSSC-EEEECCSCCHHHHHHHHHHHHTT---SCBC------
T ss_pred HHHHHHHHhCCCCCCCEEEEEccCCc---hhCCHHHcCCCcCC-eEEeeCCcCHHHHHHHHHHHHcC---CCCC------
Confidence 4444433321 23457788888874 457888887 665 57899999999999999877641 0110
Q ss_pred HHHHHHHHhCChhHHHHHHHHhccccC-HHHHHHHHHHHhhccc-ccCCCCChhhHHHHH
Q 014789 238 FNKKIKNILADGRFKEIVNTLVNLDST-VNHLLRFLFLAVSYMD-LESGFLSFENFKTAL 295 (418)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~gd-~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~ 295 (418)
.+..+..++.. ..|. .|.+..++..|...+. .+...|+.+|+.+|+
T Consensus 206 ---------~~~~~~~la~~---~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 206 ---------EDVDLALLAKR---TPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp ---------TTCCHHHHHHT---CTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred ---------cccCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 11113333332 2343 3667777777765543 355689999998875
No 62
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.54 E-value=1.3e-13 Score=126.59 Aligned_cols=212 Identities=18% Similarity=0.234 Sum_probs=128.9
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.++|.++...++....... .. ..+.+++|+||||||||++++.++..+. ...+.++|......
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~------~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR------VPFITASGSDFVEM 112 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEHHHHHHS
T ss_pred HHhCChHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC------CCEEEecHHHHHHH
Confidence 46889998888887765543 21 1245699999999999999999998764 22466665321100
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----------chhHHHHHHh
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----------KQRLLYSLLD 167 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----------~~~~L~~l~~ 167 (418)
.... .......+++.... ..+.++++||+|.+... .+..+..++.
T Consensus 113 --~~~~------------------~~~~i~~~~~~~~~----~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~ 168 (278)
T 1iy2_A 113 --FVGV------------------GAARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV 168 (278)
T ss_dssp --TTTH------------------HHHHHHHHHHHHHT----SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHH
T ss_pred --HhhH------------------HHHHHHHHHHHHHh----cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHH
Confidence 0000 00111122222221 24689999999988642 1234444443
Q ss_pred hhcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH
Q 014789 168 AMQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK 243 (418)
Q Consensus 168 ~~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 243 (418)
.... ....+++++++|..+ .+++.+.+ ||. +.+.+++++.++..+|++.++.- ..++
T Consensus 169 ~lsgg~~~~~~i~~a~t~~p~---~ld~~l~r~~rf~-~~i~i~~p~~~~r~~il~~~~~~---~~~~------------ 229 (278)
T 1iy2_A 169 EMDGFEKDTAIVVMAATNRPD---ILDPALLRPGRFD-RQIAIDAPDVKGREQILRIHARG---KPLA------------ 229 (278)
T ss_dssp HHTTCCTTCCEEEEEEESCTT---SSCHHHHSTTSSC-CEEECCCCCHHHHHHHHHHHHTT---SCBC------------
T ss_pred HHhCCCCCCCEEEEEecCCch---hCCHhHcCCCcCC-eEEEeCCcCHHHHHHHHHHHHcc---CCCC------------
Confidence 3322 234578888888854 47788877 675 57999999999999999987641 0110
Q ss_pred HHhCChhHHHHHHHHhccccCH-HHHHHHHHHHhhccc-ccCCCCChhhHHHHH
Q 014789 244 NILADGRFKEIVNTLVNLDSTV-NHLLRFLFLAVSYMD-LESGFLSFENFKTAL 295 (418)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~gd~-r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~ 295 (418)
.+..+..+... ..|.. |.+..++..|...+. .+...|+.+|+.+|+
T Consensus 230 ---~~~~~~~la~~---~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 230 ---EDVDLALLAKR---TPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp ---TTCCHHHHHHT---CTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred ---cccCHHHHHHH---cCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 11112222222 33544 667677777765553 355689999999875
No 63
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.53 E-value=6.9e-13 Score=121.04 Aligned_cols=162 Identities=17% Similarity=0.294 Sum_probs=103.5
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.+.|.++..+.|.+.+...+.. ..+..++|+||||||||++++.++..+. ...+.+++......
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~------~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG------LNFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT------CEEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC------CCEEEEEcHHHHhh
Confidence 45788888888887765332222 2355699999999999999999988754 34678887654332
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc--------hhHHHHHHhhhc
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK--------QRLLYSLLDAMQ 170 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~--------~~~L~~l~~~~~ 170 (418)
. ..+... ....+++.... ..|.++++||+|.+.... ...+..++....
T Consensus 84 ~--~~~~~~------------------~i~~vf~~a~~----~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Ls 139 (274)
T 2x8a_A 84 Y--VGESER------------------AVRQVFQRAKN----SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMD 139 (274)
T ss_dssp T--THHHHH------------------HHHHHHHHHHH----TCSEEEEEETCTTTCC---------CTTHHHHHHHHHH
T ss_pred h--hhHHHH------------------HHHHHHHHHHh----cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhh
Confidence 1 111111 11112222211 247899999999875421 123333333322
Q ss_pred c--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 171 S--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 171 ~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
. ....+++++++|.. +.+++.+.+ ||. +.|.+++++.++..+|++..+.
T Consensus 140 gg~~~~~~i~ia~tn~p---~~LD~al~r~gRfd-~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 140 GLEARQQVFIMAATNRP---DIIDPAILRPGRLD-KTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp TCCSTTCEEEEEEESCG---GGSCHHHHSTTSSC-EEEECCSCCHHHHHHHHHHHTT
T ss_pred cccccCCEEEEeecCCh---hhCCHhhcCcccCC-eEEEeCCcCHHHHHHHHHHHHh
Confidence 1 23467888999884 456888876 887 6799999999999999998764
No 64
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=1.1e-13 Score=131.53 Aligned_cols=203 Identities=15% Similarity=0.171 Sum_probs=120.8
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCe-----------------------
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTI----------------------- 85 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~----------------------- 85 (418)
.++|++...+.+...+. ..+..++++|+||+|+||||+++.++..+.......+
T Consensus 15 ~~vg~~~~~~~l~~~~~---~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 15 ALSHNEELTNFLKSLSD---QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GCCSCHHHHHHHHTTTT---CTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HhcCCHHHHHHHHHHHh---hCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 57898888776665541 4444455999999999999999999997643221100
Q ss_pred EEEEEccccCCC-hHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHH
Q 014789 86 SVIKLNGLLHSD-DCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYS 164 (418)
Q Consensus 86 ~~v~in~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~ 164 (418)
.++.+++..... ....++++...+.... ...... .+.. ..+.+.|++|||++.+....+..|..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------~~~~~~-----~ls~--l~~~~~vlilDE~~~L~~~~~~~L~~ 156 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQME--------QVDFQD-----SKDG--LAHRYKCVIINEANSLTKDAQAALRR 156 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTT--------C-------------------CCEEEEEECTTSSCHHHHHHHHH
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhc--------cccccc-----cccc--cCCCCeEEEEeCccccCHHHHHHHHH
Confidence 012222211100 0001111111111000 000000 0000 02367899999999987666777777
Q ss_pred HHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH
Q 014789 165 LLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKN 244 (418)
Q Consensus 165 l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 244 (418)
+++.+. .+..+|.+|+..+ .+.+.+.||+ ..+.|+|++.+++.+++...+. .++
T Consensus 157 ~le~~~---~~~~~Il~t~~~~---~l~~~l~sR~--~~~~~~~~~~~~~~~~l~~~~~------------------~~~ 210 (354)
T 1sxj_E 157 TMEKYS---KNIRLIMVCDSMS---PIIAPIKSQC--LLIRCPAPSDSEISTILSDVVT------------------NER 210 (354)
T ss_dssp HHHHST---TTEEEEEEESCSC---SSCHHHHTTS--EEEECCCCCHHHHHHHHHHHHH------------------HHT
T ss_pred HHHhhc---CCCEEEEEeCCHH---HHHHHHHhhc--eEEecCCcCHHHHHHHHHHHHH------------------HcC
Confidence 766542 4577888887744 3567899999 6799999999999999998763 011
Q ss_pred -HhC-ChhHHHHHHHHhccccCHHHHHHHHHHHhhc
Q 014789 245 -ILA-DGRFKEIVNTLVNLDSTVNHLLRFLFLAVSY 278 (418)
Q Consensus 245 -~~~-~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~ 278 (418)
.++ ++++..++.. ..||+|.+++.+..+...
T Consensus 211 ~~~~~~~~l~~i~~~---~~G~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 211 IQLETKDILKRIAQA---SNGNLRVSLLMLESMALN 243 (354)
T ss_dssp CEECCSHHHHHHHHH---HTTCHHHHHHHHTHHHHT
T ss_pred CCCCcHHHHHHHHHH---cCCCHHHHHHHHHHHHHh
Confidence 234 5544444432 369999999999876654
No 65
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.52 E-value=8.3e-14 Score=147.04 Aligned_cols=163 Identities=15% Similarity=0.207 Sum_probs=101.8
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCC----CCeEEEEEccccCCChHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYP----DTISVIKLNGLLHSDDCCAFKE 104 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~----~~~~~v~in~~~~~~~~~~~~~ 104 (418)
.++||++++..+...+ .....++++|+||||||||++++.+++.+..... ....+++++|.........
T Consensus 171 ~viGr~~~i~~l~~~l----~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~--- 243 (854)
T 1qvr_A 171 PVIGRDEEIRRVIQIL----LRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKY--- 243 (854)
T ss_dssp CCCSCHHHHHHHHHHH----HCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred ccCCcHHHHHHHHHHH----hcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCcc---
Confidence 4899999999988876 3356778999999999999999999998865221 1366788887443210000
Q ss_pred HHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc-----h---hHHHHHHhhhccCCCcE
Q 014789 105 IARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK-----Q---RLLYSLLDAMQSVTSQA 176 (418)
Q Consensus 105 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~-----~---~~L~~l~~~~~~~~~~~ 176 (418)
.+.+.+.+..+++.+... +.+.||+|||+|.+.... . +.|..++. ...+
T Consensus 244 ---------------~g~~~~~l~~~~~~~~~~---~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~-----~~~i 300 (854)
T 1qvr_A 244 ---------------RGEFEERLKAVIQEVVQS---QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA-----RGEL 300 (854)
T ss_dssp -----------------CHHHHHHHHHHHHHTT---CSSEEEEECCC-------------------HHHHH-----TTCC
T ss_pred ---------------chHHHHHHHHHHHHHHhc---CCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh-----CCCe
Confidence 012233333344444332 357999999999997431 2 23333332 2567
Q ss_pred EEEEeccCCChHH-HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 177 VVIGVSCRLDADQ-LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 177 ~lI~~s~~~~~~~-~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
.+|+++|..++.. .+++++.+||. .+.+++++.++..+|++..+.
T Consensus 301 ~~I~at~~~~~~~~~~d~aL~rRf~--~i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 301 RLIGATTLDEYREIEKDPALERRFQ--PVYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp CEEEEECHHHHHHHTTCTTTCSCCC--CEEECCCCHHHHHHHHHHHHH
T ss_pred EEEEecCchHHhhhccCHHHHhCCc--eEEeCCCCHHHHHHHHHhhhh
Confidence 7889888744322 24788999995 489999999999999987653
No 66
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.52 E-value=1.2e-13 Score=131.62 Aligned_cols=216 Identities=17% Similarity=0.146 Sum_probs=127.8
Q ss_pred CCCChhhhHHHHHHHHHHHHhc-----------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTE-----------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD 97 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~-----------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~ 97 (418)
.++|.+..++.+...+...... ..+.+++|+||||||||++++.+++.+. ..++.++|.....
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~------~~~~~~~~~~l~~ 89 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD------VPFTMADATTLTE 89 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT------CCEEEEEHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC------CCEEEechHHhcc
Confidence 4789999999888887533211 1467899999999999999999999874 3457788764332
Q ss_pred hHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--------------chhHHH
Q 014789 98 DCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--------------KQRLLY 163 (418)
Q Consensus 98 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--------------~~~~L~ 163 (418)
.. .+..- . ......++......-....+.||+|||+|.+... -+..|.
T Consensus 90 ~~-~~g~~---~--------------~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll 151 (363)
T 3hws_A 90 AG-YVGED---V--------------ENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALL 151 (363)
T ss_dssp CH-HHHHH---H--------------THHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHH
T ss_pred cc-ccccc---H--------------HHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHH
Confidence 10 11100 0 0001111111000000124679999999999875 356666
Q ss_pred HHHhhh------------------ccCCCcEEEEEeccCCChHHH-----------------------------------
Q 014789 164 SLLDAM------------------QSVTSQAVVIGVSCRLDADQL----------------------------------- 190 (418)
Q Consensus 164 ~l~~~~------------------~~~~~~~~lI~~s~~~~~~~~----------------------------------- 190 (418)
.+++-. --...++.+|++++..++...
T Consensus 152 ~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~ 231 (363)
T 3hws_A 152 KLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEP 231 (363)
T ss_dssp HHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCH
T ss_pred HHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCH
Confidence 666510 001245556666654322111
Q ss_pred -------HHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH-----HhCChhHHHHHHHH
Q 014789 191 -------LEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKN-----ILADGRFKEIVNTL 258 (418)
Q Consensus 191 -------l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 258 (418)
+.+.+.+||. ..+.|.|++.+++.+|+...+. .+...+...... .++++++..++...
T Consensus 232 ~~l~~~~~~~~l~~R~~-~~~~~~pl~~~~~~~I~~~~~~---------~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~ 301 (363)
T 3hws_A 232 EDLIKFGLIPEFIGRLP-VVATLNELSEEALIQILKEPKN---------ALTKQYQALFNLEGVDLEFRDEALDAIAKKA 301 (363)
T ss_dssp HHHHHHTCCHHHHTTCC-EEEECCCCCHHHHHHHHHSSTT---------CHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHhcccC-eeeecCCCCHHHHHHHHHHHHH---------HHHHHHHHHHHhcCceEEECHHHHHHHHHhh
Confidence 4577788996 5677999999999999886332 122233332221 13555555566555
Q ss_pred hccccCHHHHHHHHHHHhhc
Q 014789 259 VNLDSTVNHLLRFLFLAVSY 278 (418)
Q Consensus 259 ~~~~gd~r~~~~~l~~a~~~ 278 (418)
+...+++|.+.+++.+++..
T Consensus 302 ~~~~~gaR~L~~~ie~~~~~ 321 (363)
T 3hws_A 302 MARKTGARGLRSIVEAALLD 321 (363)
T ss_dssp HHTTCTTTTHHHHHHHHHHH
T ss_pred cCCccCchHHHHHHHHHHHH
Confidence 66677788887777766544
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.51 E-value=2e-13 Score=142.75 Aligned_cols=216 Identities=13% Similarity=0.163 Sum_probs=140.1
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc-----CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE-----ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAF 102 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~-----~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~ 102 (418)
..++|.++.++.+...+.....+ .+..+++|+||||||||++++.+++.+. ..+++++|.........
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~------~~~~~i~~s~~~~~~~~- 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG------IELLRFDMSEYMERHTV- 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT------CEEEEEEGGGCSSSSCC-
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc------CCEEEEechhhcchhhH-
Confidence 35789999999998888765432 1234799999999999999999999883 44688898776532100
Q ss_pred HHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccC--------CC
Q 014789 103 KEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSV--------TS 174 (418)
Q Consensus 103 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~--------~~ 174 (418)
..+ .+ .+++..++++ ...+.+.+... .+.||+|||+|.+....++.|..+++..... ..
T Consensus 531 ----~~l---~g-~~~g~~g~~~-~~~l~~~~~~~----~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~ 597 (758)
T 1r6b_X 531 ----SRL---IG-APPGYVGFDQ-GGLLTDAVIKH----PHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_dssp ----SSS---CC-CCSCSHHHHH-TTHHHHHHHHC----SSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECT
T ss_pred ----hhh---cC-CCCCCcCccc-cchHHHHHHhC----CCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecC
Confidence 000 00 0011111111 11233444432 4789999999999877777888877753211 14
Q ss_pred cEEEEEeccCCC----------------------hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCCh
Q 014789 175 QAVVIGVSCRLD----------------------ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPH 232 (418)
Q Consensus 175 ~~~lI~~s~~~~----------------------~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~ 232 (418)
++++|++||... +...+.+.+.+||. ..|.|+|++.+++..|+..++.
T Consensus 598 ~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~-~~i~~~~l~~~~~~~i~~~~l~--------- 667 (758)
T 1r6b_X 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLD-NIIWFDHLSTDVIHQVVDKFIV--------- 667 (758)
T ss_dssp TEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCS-EEEECCCCCHHHHHHHHHHHHH---------
T ss_pred CeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCC-cceeeCCCCHHHHHHHHHHHHH---------
Confidence 678999998732 11256788899997 4599999999999999999874
Q ss_pred HHHHHHHHHHHH-----HhCChhHHHHHHHHhccccCHHHHHHHHHHHhh
Q 014789 233 AYAVEFNKKIKN-----ILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVS 277 (418)
Q Consensus 233 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~ 277 (418)
.++..... .++++++..++...+...+++|.+.+++..++.
T Consensus 668 ----~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 668 ----ELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp ----HHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred ----HHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 22222221 245555555555555545568888777776654
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.50 E-value=4.7e-14 Score=147.26 Aligned_cols=205 Identities=15% Similarity=0.167 Sum_probs=137.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCC-----CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEAC-----NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAF 102 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~-----~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~ 102 (418)
..++|.+..++.+...+.....+.. .++++|+||||||||++++.+++.+.... ..++++||..........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~---~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDE---ESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCT---TCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC---cceEEEechhcccccccc
Confidence 4588999999999999887643321 23799999999999999999999885432 456888987765421000
Q ss_pred HHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCC
Q 014789 103 KEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTS 174 (418)
Q Consensus 103 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~ 174 (418)
...+.+.+... .+.||+|||+|.+....+..|..+++.... ...
T Consensus 568 ------------------------~~~l~~~~~~~----~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~ 619 (758)
T 3pxi_A 568 ------------------------GGQLTEKVRRK----PYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFR 619 (758)
T ss_dssp ---------------------------CHHHHHHC----SSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCT
T ss_pred ------------------------cchhhHHHHhC----CCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccC
Confidence 00011222221 356999999999988777888888775331 224
Q ss_pred cEEEEEeccCCC---------hHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH--
Q 014789 175 QAVVIGVSCRLD---------ADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK-- 243 (418)
Q Consensus 175 ~~~lI~~s~~~~---------~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~-- 243 (418)
++.+|++||... ....+.|.+.+||. ..|.|+|++.+++.+|+...+. .++....
T Consensus 620 ~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~-~~i~~~~l~~~~~~~i~~~~l~-------------~~~~~~~~~ 685 (758)
T 3pxi_A 620 NTILIMTSNVGASEKDKVMGELKRAFRPEFINRID-EIIVFHSLEKKHLTEIVSLMSD-------------QLTKRLKEQ 685 (758)
T ss_dssp TCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSS-EEEECC--CHHHHHHHHHHHHH-------------HHHHHHHTT
T ss_pred CeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCC-eEEecCCCCHHHHHHHHHHHHH-------------HHHHHHHhC
Confidence 678999998532 12346788889996 4799999999999999998874 2222221
Q ss_pred ---HHhCChhHHHHHHHHhccccCHHHHHHHHHHHhh
Q 014789 244 ---NILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVS 277 (418)
Q Consensus 244 ---~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~ 277 (418)
-.++++++..++...+...|++|.+.+++.+++.
T Consensus 686 ~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~ 722 (758)
T 3pxi_A 686 DLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVE 722 (758)
T ss_dssp TCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTH
T ss_pred CCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHH
Confidence 1244555555555556677888888888776543
No 69
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.50 E-value=1.4e-13 Score=130.61 Aligned_cols=153 Identities=15% Similarity=0.194 Sum_probs=95.9
Q ss_pred EEEEEecchhhhhhcchhHHHHHHhhhc----c------CCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCC-CH
Q 014789 143 TIIFVLDEFDLFAQGKQRLLYSLLDAMQ----S------VTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPP-SK 211 (418)
Q Consensus 143 ~~viilDEid~l~~~~~~~L~~l~~~~~----~------~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~-~~ 211 (418)
+.+|+|||+|.+....+..|..+++... . ...++.+|+++|+.+ ..+.+.+.+||. ..+.++++ +.
T Consensus 145 ~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~--~~l~~~L~~R~~-~~~~l~~~~~~ 221 (350)
T 1g8p_A 145 RGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEE--GDLRPQLLDRFG-LSVEVLSPRDV 221 (350)
T ss_dssp TEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCS--CCCCHHHHTTCS-EEEECCCCCSH
T ss_pred CCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCC--CCCCHHHHhhcc-eEEEcCCCCcH
Confidence 5699999999998877777777666421 0 123789999999743 246789999996 45889888 46
Q ss_pred HHHHHHHHHHhcCCCCCCCChHHHHHHH--------------HHHHH-HhCChhHHHHHHHHhcccc-CHHHHHHHHHHH
Q 014789 212 EDMQRLLEHILSLPVDSSLPHAYAVEFN--------------KKIKN-ILADGRFKEIVNTLVNLDS-TVNHLLRFLFLA 275 (418)
Q Consensus 212 ~e~~~il~~~l~~~~~~~~~~~~~~~~~--------------~~~~~-~~~~~~~~~~~~~~~~~~g-d~r~~~~~l~~a 275 (418)
++..+|+..++....+ ...+...|. ..... .++++++..+........+ ++|.+.++++.|
T Consensus 222 ~~~~~il~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a 298 (350)
T 1g8p_A 222 ETRVEVIRRRDTYDAD---PKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSA 298 (350)
T ss_dssp HHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccC---chhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 6666888876431000 011111110 00011 2344444444443333333 799999999988
Q ss_pred hhccc-ccCCCCChhhHHHHHhccCCC
Q 014789 276 VSYMD-LESGFLSFENFKTALSNSHRQ 301 (418)
Q Consensus 276 ~~~a~-~~~~~it~~~v~~a~~~~~~~ 301 (418)
...|. .+...|+.+||.+|+..+...
T Consensus 299 ~~~A~~~~~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 299 RALAALEGATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp HHHHHHTTCSBCCHHHHHHHHHHHHGG
T ss_pred HHHHHHcCCCcCCHHHHHHHHHHHHhh
Confidence 77664 355679999999988765443
No 70
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=1.7e-13 Score=126.75 Aligned_cols=145 Identities=13% Similarity=0.074 Sum_probs=97.4
Q ss_pred HHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCC
Q 014789 43 LVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMAS 122 (418)
Q Consensus 43 ~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 122 (418)
.|...++.+..++++++||||+|||++++.+++...........+..+++......-..++++.+.+
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~------------- 74 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFL------------- 74 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHH-------------
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHH-------------
Confidence 3444455556778999999999999999999986431111113346666542111122234443333
Q ss_pred hHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccCce
Q 014789 123 FDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHR 202 (418)
Q Consensus 123 ~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~ 202 (418)
......+...|+||||+|.|....++.|...++. .+....+|++++. +..+.+.++||
T Consensus 75 ------------~~~p~~~~~kvviIdead~lt~~a~naLLk~LEe---p~~~t~fIl~t~~---~~kl~~tI~SR---- 132 (305)
T 2gno_A 75 ------------NYSPELYTRKYVIVHDCERMTQQAANAFLKALEE---PPEYAVIVLNTRR---WHYLLPTIKSR---- 132 (305)
T ss_dssp ------------TSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHS---CCTTEEEEEEESC---GGGSCHHHHTT----
T ss_pred ------------hhccccCCceEEEeccHHHhCHHHHHHHHHHHhC---CCCCeEEEEEECC---hHhChHHHHce----
Confidence 2222234578999999999987666666665554 3467788888866 45778899999
Q ss_pred EEEecCCCHHHHHHHHHHHh
Q 014789 203 KLLFLPPSKEDMQRLLEHIL 222 (418)
Q Consensus 203 ~i~~~~~~~~e~~~il~~~l 222 (418)
.+.|+|++.+++.+++..++
T Consensus 133 ~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 133 VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SEEEECCCCHHHHHHHHHHH
T ss_pred eEeCCCCCHHHHHHHHHHHh
Confidence 58999999999999999875
No 71
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.49 E-value=1.3e-13 Score=144.18 Aligned_cols=229 Identities=12% Similarity=0.163 Sum_probs=138.4
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhC-C---CCeEEEEEccccCCChHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEY-P---DTISVIKLNGLLHSDDCCAFK 103 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~-~---~~~~~v~in~~~~~~~~~~~~ 103 (418)
+.++||+++++.+.+.+ ....+++++|+||||||||++++.+++.+.... + ....++.+++......
T Consensus 186 d~~iGr~~~i~~l~~~l----~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~----- 256 (758)
T 1r6b_X 186 DPLIGREKELERAIQVL----CRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAG----- 256 (758)
T ss_dssp CCCCSCHHHHHHHHHHH----TSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CC-----
T ss_pred CCccCCHHHHHHHHHHH----hccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhcc-----
Confidence 35899999999987765 345678999999999999999999999886432 1 1233444443221100
Q ss_pred HHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc------chhHHHHHHhhhccCCCcEE
Q 014789 104 EIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG------KQRLLYSLLDAMQSVTSQAV 177 (418)
Q Consensus 104 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~------~~~~L~~l~~~~~~~~~~~~ 177 (418)
....+.+.+....+++.+.. ..+.||+|||+|.+... ..+....|.... ....+.
T Consensus 257 -------------~~~~g~~e~~l~~~~~~~~~----~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l--~~~~~~ 317 (758)
T 1r6b_X 257 -------------TKYRGDFEKRFKALLKQLEQ----DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIR 317 (758)
T ss_dssp -------------CCCSSCHHHHHHHHHHHHSS----SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS--SSCCCE
T ss_pred -------------ccccchHHHHHHHHHHHHHh----cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH--hCCCeE
Confidence 00112333333344443332 24689999999999643 122222222222 235778
Q ss_pred EEEeccCCChHHH--HHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHH
Q 014789 178 VIGVSCRLDADQL--LEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIV 255 (418)
Q Consensus 178 lI~~s~~~~~~~~--l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (418)
+|++++..++... .++++.+||. .+.|++++.++..+|+..... .|.......++++++..++
T Consensus 318 ~I~at~~~~~~~~~~~d~aL~~Rf~--~i~v~~p~~~e~~~il~~l~~-------------~~~~~~~v~~~~~al~~~~ 382 (758)
T 1r6b_X 318 VIGSTTYQEFSNIFEKDRALARRFQ--KIDITEPSIEETVQIINGLKP-------------KYEAHHDVRYTAKAVRAAV 382 (758)
T ss_dssp EEEEECHHHHHCCCCCTTSSGGGEE--EEECCCCCHHHHHHHHHHHHH-------------HHHHHHTCCCCHHHHHHHH
T ss_pred EEEEeCchHHhhhhhcCHHHHhCce--EEEcCCCCHHHHHHHHHHHHH-------------HHHHhcCCCCCHHHHHHHH
Confidence 8999876432222 3577889994 689999999999999988653 1111111113444444444
Q ss_pred HHHhcc---ccCHHHHHHHHHHHhhccc-----ccCCCCChhhHHHHHhccC
Q 014789 256 NTLVNL---DSTVNHLLRFLFLAVSYMD-----LESGFLSFENFKTALSNSH 299 (418)
Q Consensus 256 ~~~~~~---~gd~r~~~~~l~~a~~~a~-----~~~~~it~~~v~~a~~~~~ 299 (418)
...... ...+..+++++..|...+. .....|+.++|.+++..+.
T Consensus 383 ~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 383 ELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHS
T ss_pred HHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhc
Confidence 333322 2345678888877654432 2356799999999887654
No 72
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.48 E-value=7.2e-14 Score=137.43 Aligned_cols=195 Identities=17% Similarity=0.231 Sum_probs=118.1
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhC-C---CCeEEEEEccccCCChHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEY-P---DTISVIKLNGLLHSDDCCAFKE 104 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~-~---~~~~~v~in~~~~~~~~~~~~~ 104 (418)
.++||+++++.+...+.. ...++++|+||||||||++++.+++.+.... + ....++.++|. .. +.
T Consensus 181 ~iiGr~~~i~~l~~~l~r----~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--~~----~~- 249 (468)
T 3pxg_A 181 PVIGRSKEIQRVIEVLSR----RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--TK----YR- 249 (468)
T ss_dssp CCCCCHHHHHHHHHHHHC----SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred CccCcHHHHHHHHHHHhc----cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--cc----cc-
Confidence 589999999998887643 5677899999999999999999999986432 1 12455666664 00 00
Q ss_pred HHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 105 IARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 105 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
+.+......+++.+.. ..+.||+|| .....++.|...+ . ...+.+|+++|.
T Consensus 250 ----------------g~~e~~~~~~~~~~~~----~~~~iLfiD----~~~~a~~~L~~~L---~--~g~v~vI~at~~ 300 (468)
T 3pxg_A 250 ----------------GEFEDRLKKVMDEIRQ----AGNIILFID----AAIDASNILKPSL---A--RGELQCIGATTL 300 (468)
T ss_dssp -------------------CTTHHHHHHHHHT----CCCCEEEEC----C--------CCCT---T--SSSCEEEEECCT
T ss_pred ----------------chHHHHHHHHHHHHHh----cCCeEEEEe----CchhHHHHHHHhh---c--CCCEEEEecCCH
Confidence 1111222333443433 257899999 1111222232222 2 357899999999
Q ss_pred CChHH--HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCC-CCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhcc
Q 014789 185 LDADQ--LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLP-VDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNL 261 (418)
Q Consensus 185 ~~~~~--~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (418)
.++.. .+++.+.+||. .|.|++|+.+++.+|++..+... ...+. .++++++..++.....+
T Consensus 301 ~e~~~~~~~~~al~~Rf~--~i~v~~p~~e~~~~iL~~~~~~~~~~~~~--------------~i~~~al~~l~~~s~~~ 364 (468)
T 3pxg_A 301 DEYRKYIEKDAALERRFQ--PIQVDQPSVDESIQILQGLRDRYEAHHRV--------------SITDDAIEAAVKLSDRY 364 (468)
T ss_dssp TTTHHHHTTCSHHHHSEE--EEECCCCCHHHHHHHHHHTTTTSGGGSSC--------------SCCHHHHHHHHHHHHHS
T ss_pred HHHHHHhhcCHHHHHhCc--cceeCCCCHHHHHHHHHHHHHHHHHhcCC--------------CCCHHHHHHHHHHHHHH
Confidence 77544 35788999994 69999999999999999876411 00111 12333444444333333
Q ss_pred cc---CHHHHHHHHHHHhhcc
Q 014789 262 DS---TVNHLLRFLFLAVSYM 279 (418)
Q Consensus 262 ~g---d~r~~~~~l~~a~~~a 279 (418)
.+ -++.+++++..|...+
T Consensus 365 ~~~~~lp~~ai~ll~~a~~~~ 385 (468)
T 3pxg_A 365 ISDRFLPDKAIDLIDEAGSKV 385 (468)
T ss_dssp SCCSCTTHHHHHHHHHHHHHH
T ss_pred hccCcCCcHHHHHHHHHHHHH
Confidence 33 3678888888776543
No 73
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.47 E-value=5.3e-14 Score=120.60 Aligned_cols=154 Identities=16% Similarity=0.215 Sum_probs=93.8
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCC----CCeEEEEEccccCCChHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYP----DTISVIKLNGLLHSDDCCAFK 103 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~----~~~~~v~in~~~~~~~~~~~~ 103 (418)
+.++||+++++.+...+ ....+.+++|+||||||||++++.+++.+..... ....++++++....
T Consensus 22 ~~~~g~~~~~~~l~~~l----~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 90 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQIL----SRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLI------- 90 (187)
T ss_dssp CCCCSCHHHHHHHHHHH----TSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHH-------
T ss_pred chhhcchHHHHHHHHHH----hCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhh-------
Confidence 46899999999888776 3356778999999999999999999998865210 12455666652211
Q ss_pred HHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhh-----c-chhHHHHHHhhhccCCCcEE
Q 014789 104 EIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQ-----G-KQRLLYSLLDAMQSVTSQAV 177 (418)
Q Consensus 104 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~-----~-~~~~L~~l~~~~~~~~~~~~ 177 (418)
... ............+...+... +.+.+|+|||+|.+.. . ...++..+..... ..++.
T Consensus 91 ---~~~--------~~~~~~~~~~~~~~~~~~~~---~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~--~~~~~ 154 (187)
T 2p65_A 91 ---AGA--------KYRGDFEERLKSILKEVQDA---EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLA--RGELR 154 (187)
T ss_dssp ---HHC--------CSHHHHHHHHHHHHHHHHHT---TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHH--TTCSC
T ss_pred ---cCC--------CchhHHHHHHHHHHHHHHhc---CCceEEEEeCHHHhcccccccccchHHHHHHHHHHh--cCCee
Confidence 000 00001111222233333332 3578999999999972 2 1222222222222 25678
Q ss_pred EEEeccCCChHH--HHHHHhhcccCceEEEecCCC
Q 014789 178 VIGVSCRLDADQ--LLEKRVRSRFSHRKLLFLPPS 210 (418)
Q Consensus 178 lI~~s~~~~~~~--~l~~~v~sr~~~~~i~~~~~~ 210 (418)
+|+++|..++.. .+++++.+||. .+.+++++
T Consensus 155 ii~~~~~~~~~~~~~~~~~l~~R~~--~i~i~~p~ 187 (187)
T 2p65_A 155 CIGATTVSEYRQFIEKDKALERRFQ--QILVEQPS 187 (187)
T ss_dssp EEEEECHHHHHHHTTTCHHHHHHEE--EEECCSCC
T ss_pred EEEecCHHHHHHHHhccHHHHHhcC--cccCCCCC
Confidence 888888744321 35789999995 57887764
No 74
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.47 E-value=3.5e-13 Score=142.23 Aligned_cols=219 Identities=15% Similarity=0.167 Sum_probs=138.6
Q ss_pred CCCChhhhHHHHHHHHHHHHhc-----CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTE-----ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFK 103 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~-----~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~ 103 (418)
.++|.+..++.+...+.....+ .+..+++|+||||||||++++.+++.+.... ..++++||........ ..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~---~~~i~i~~~~~~~~~~-~s 634 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE---EAMIRIDMTEYMEKHA-VS 634 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG---GGEEEECTTTCCSSGG-GG
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC---CcEEEEechhccchhH-HH
Confidence 4789999999999998876432 1125899999999999999999999886432 4468899977654311 11
Q ss_pred HHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccC--------CCc
Q 014789 104 EIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSV--------TSQ 175 (418)
Q Consensus 104 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~--------~~~ 175 (418)
.++ +. +++..+..+ ...+.+.+... .+.||+|||+|.+....++.|..+++..... -.+
T Consensus 635 ~l~---g~-----~~~~~G~~~-~g~l~~~~~~~----~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~ 701 (854)
T 1qvr_A 635 RLI---GA-----PPGYVGYEE-GGQLTEAVRRR----PYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRN 701 (854)
T ss_dssp GC-----------------------CHHHHHHHC----SSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTT
T ss_pred HHc---CC-----CCCCcCccc-cchHHHHHHhC----CCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCC
Confidence 110 00 001111111 01133334332 3579999999999877777888887754321 136
Q ss_pred EEEEEeccCCC---------------hHHH--------HHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCCh
Q 014789 176 AVVIGVSCRLD---------------ADQL--------LEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPH 232 (418)
Q Consensus 176 ~~lI~~s~~~~---------------~~~~--------l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~ 232 (418)
+++|++||... +.+. +.+.+.+|+. ..+.|.|++.+++..|+...+.
T Consensus 702 ~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~-~~i~~~pl~~edi~~i~~~~l~--------- 771 (854)
T 1qvr_A 702 TVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLD-EIVVFRPLTKEQIRQIVEIQLS--------- 771 (854)
T ss_dssp EEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCS-BCCBCCCCCHHHHHHHHHHHHH---------
T ss_pred eEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcC-eEEeCCCCCHHHHHHHHHHHHH---------
Confidence 77999998621 1222 2355667775 4578899999999999998874
Q ss_pred HHHHHHHHHHHH-----HhCChhHHHHHHHHhccccCHHHHHHHHHHHhhc
Q 014789 233 AYAVEFNKKIKN-----ILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSY 278 (418)
Q Consensus 233 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~ 278 (418)
.++..... .++++++..++...+...|++|.+.+++.+++..
T Consensus 772 ----~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~ 818 (854)
T 1qvr_A 772 ----YLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELET 818 (854)
T ss_dssp ----HHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHH
T ss_pred ----HHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHH
Confidence 22222211 2455555566665555578999998888876543
No 75
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.47 E-value=1.7e-13 Score=136.99 Aligned_cols=228 Identities=15% Similarity=0.158 Sum_probs=127.1
Q ss_pred CCChhhhHHHHHHHHHHHH--hcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 30 SDSPDSNYSKLKFLVSSSV--TEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~--~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
++|.++....+...+.-.. ....+.+++|+||||||||++++.++..+. ...+.++|...............
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~------~~~~~i~~~~~~~~~~~~g~~~~ 156 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG------RKFVRISLGGVRDESEIRGHRRT 156 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT------CEEEEECCCC-------------
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC------CCeEEEEecccchhhhhhhHHHH
Confidence 5666666666655433211 122467899999999999999999999874 34567777554332211111111
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcc----hhHHHHHHhhhccC-----------
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGK----QRLLYSLLDAMQSV----------- 172 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~----~~~L~~l~~~~~~~----------- 172 (418)
..+. ....+...+.... ...+ |++|||+|.+.... ++.|..+++..+..
T Consensus 157 ~ig~--------------~~~~~~~~~~~a~-~~~~-vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~ 220 (543)
T 3m6a_A 157 YVGA--------------MPGRIIQGMKKAG-KLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETF 220 (543)
T ss_dssp ---------------------CHHHHHHTTC-SSSE-EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCC
T ss_pred Hhcc--------------CchHHHHHHHHhh-ccCC-EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeee
Confidence 1110 0111222333322 1234 99999999998762 24444444322210
Q ss_pred -CCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHH----HH-Hh
Q 014789 173 -TSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKI----KN-IL 246 (418)
Q Consensus 173 -~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~----~~-~~ 246 (418)
..++.+|+++|.. +.+++.+.+|| ..|.|++|+.++..+|+...+. ..+.... .. .+
T Consensus 221 ~~~~v~iI~ttN~~---~~l~~aL~~R~--~vi~~~~~~~~e~~~Il~~~l~------------~~~~~~~~~~~~~i~i 283 (543)
T 3m6a_A 221 DLSKVLFIATANNL---ATIPGPLRDRM--EIINIAGYTEIEKLEIVKDHLL------------PKQIKEHGLKKSNLQL 283 (543)
T ss_dssp BCSSCEEEEECSST---TTSCHHHHHHE--EEEECCCCCHHHHHHHHHHTHH------------HHHHHHTTCCGGGCEE
T ss_pred cccceEEEeccCcc---ccCCHHHHhhc--ceeeeCCCCHHHHHHHHHHHHH------------HHHHHHcCCCcccccC
Confidence 1567899999984 46778999999 5799999999999999988752 0000000 00 12
Q ss_pred CChhHHHHHHHHhccccCHHHHHHHHHHHhhccc-------ccCCCCChhhHHHHHhc
Q 014789 247 ADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMD-------LESGFLSFENFKTALSN 297 (418)
Q Consensus 247 ~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~-------~~~~~it~~~v~~a~~~ 297 (418)
+++++..++. .+...|++|.+.+.+..++..+. .+...|+.+++.+++..
T Consensus 284 ~~~~l~~l~~-~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 284 RDQAILDIIR-YYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp CHHHHHHHHH-HHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred CHHHHHHHHH-hCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 3444444444 34445778776655554433321 13457899999988753
No 76
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.46 E-value=1e-12 Score=129.08 Aligned_cols=241 Identities=13% Similarity=0.046 Sum_probs=144.8
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
..++|+++.++.+...+.. +.+++|+||||||||++++.++..+... ..+.+++|.. .++..++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~------~~~VLL~GpPGtGKT~LAraLa~~l~~~----~~f~~~~~~~-~t~~dL~G~~-- 88 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS------GESVFLLGPPGIAKSLIARRLKFAFQNA----RAFEYLMTRF-STPEEVFGPL-- 88 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH------TCEEEEECCSSSSHHHHHHHGGGGBSSC----CEEEEECCTT-CCHHHHHCCB--
T ss_pred hhhHHHHHHHHHHHHHHhc------CCeeEeecCchHHHHHHHHHHHHHHhhh----hHHHHHHHhc-CCHHHhcCcc--
Confidence 4688999988877665432 4589999999999999999998876432 2345556543 2332222100
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCC--CceEEEEEecchhhhhhcchhHHHHHHhhhc--------cCCCcEE
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGL--AHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ--------SVTSQAV 177 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~viilDEid~l~~~~~~~L~~l~~~~~--------~~~~~~~ 177 (418)
...... . ...+..... ...+.|++|||++.+....+..|..+++... ..+.+ +
T Consensus 89 --------------~~~~~~-~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~-~ 151 (500)
T 3nbx_X 89 --------------SIQALK-D-EGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMR-L 151 (500)
T ss_dssp --------------C------------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCC-E
T ss_pred --------------cHHHHh-h-chhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchh-h
Confidence 000000 0 000110000 0035599999999988777777777765321 12233 3
Q ss_pred EEEeccCCChHHHHHHHhhcccCceEEEecCCCH-HHHHHHHHHHhcC-----CCCCCCChHHHHHHHHHHHHHhCChhH
Q 014789 178 VIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSK-EDMQRLLEHILSL-----PVDSSLPHAYAVEFNKKIKNILADGRF 251 (418)
Q Consensus 178 lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~-~e~~~il~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (418)
+|++||+.+-...+.+++.+||. ..+.+++++. ++..+|+..+... .....++.+.+..|......+.-++.+
T Consensus 152 iI~ATN~lpe~~~~~~aLldRF~-~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v 230 (500)
T 3nbx_X 152 LVAASNELPEADSSLEALYDRML-IRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV 230 (500)
T ss_dssp EEEEESSCCCTTCTTHHHHTTCC-EEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH
T ss_pred hhhccccCCCccccHHHHHHHHH-HHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH
Confidence 67777765422234467889994 5688888886 6788888876531 111223555566665555555455666
Q ss_pred HHHHHHHhc--------cccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhccCC
Q 014789 252 KEIVNTLVN--------LDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNSHR 300 (418)
Q Consensus 252 ~~~~~~~~~--------~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~~~ 300 (418)
.+.+..+.. ...+.|.++.+++.|...|. .+...|+++||. +...+..
T Consensus 231 ~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL~ 287 (500)
T 3nbx_X 231 FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCLW 287 (500)
T ss_dssp HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTSC
T ss_pred HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhhh
Confidence 666655552 13488998888887766654 477899999998 5444433
No 77
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.45 E-value=9.7e-14 Score=114.26 Aligned_cols=139 Identities=12% Similarity=0.083 Sum_probs=92.1
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++|++..+..+.+.+..+.. ...+++|+||||||||++++.+.+...... ..++ ++|....+... .
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~--~~~~vll~G~~GtGKt~lA~~i~~~~~~~~---~~~v-~~~~~~~~~~~-~------ 68 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE--TDIAVWLYGAPGTGRMTGARYLHQFGRNAQ---GEFV-YRELTPDNAPQ-L------ 68 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT--CCSCEEEESSTTSSHHHHHHHHHHSSTTTT---SCCE-EEECCTTTSSC-H------
T ss_pred CceeCCHHHHHHHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHHHhCCccC---CCEE-EECCCCCcchh-h------
Confidence 478999999999999888643 456899999999999999999887654332 2245 78766543200 0
Q ss_pred HHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChH
Q 014789 109 LCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDAD 188 (418)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~ 188 (418)
...+... ...+|+|||+|.+....|..|..++. ....++.+|++||.. ..
T Consensus 69 ----------------------~~~~~~a----~~g~l~ldei~~l~~~~q~~Ll~~l~---~~~~~~~~I~~t~~~-~~ 118 (145)
T 3n70_A 69 ----------------------NDFIALA----QGGTLVLSHPEHLTREQQYHLVQLQS---QEHRPFRLIGIGDTS-LV 118 (145)
T ss_dssp ----------------------HHHHHHH----TTSCEEEECGGGSCHHHHHHHHHHHH---SSSCSSCEEEEESSC-HH
T ss_pred ----------------------hcHHHHc----CCcEEEEcChHHCCHHHHHHHHHHHh---hcCCCEEEEEECCcC-HH
Confidence 0011111 12479999999998876766666653 233567788888873 33
Q ss_pred HH-----HHHHhhcccCceEEEecCCC
Q 014789 189 QL-----LEKRVRSRFSHRKLLFLPPS 210 (418)
Q Consensus 189 ~~-----l~~~v~sr~~~~~i~~~~~~ 210 (418)
+. +.+.+..|+....|.+||+.
T Consensus 119 ~~~~~~~~~~~L~~rl~~~~i~lPpLR 145 (145)
T 3n70_A 119 ELAASNHIIAELYYCFAMTQIACLPLT 145 (145)
T ss_dssp HHHHHSCCCHHHHHHHHHHEEECCCCC
T ss_pred HHHHcCCCCHHHHHHhcCCEEeCCCCC
Confidence 33 23455667765578888863
No 78
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.42 E-value=7.3e-14 Score=114.71 Aligned_cols=137 Identities=13% Similarity=0.139 Sum_probs=93.4
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQ 108 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 108 (418)
.++|+++.++.+.+.+..... ...+++|+||||||||++++.+.+... .+++++|...... ..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~--~~~~vll~G~~GtGKt~lA~~i~~~~~-------~~~~~~~~~~~~~--~~------ 67 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK--RTSPVFLTGEAGSPFETVARYFHKNGT-------PWVSPARVEYLID--MP------ 67 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT--CSSCEEEEEETTCCHHHHHGGGCCTTS-------CEECCSSTTHHHH--CH------
T ss_pred CceeCCHHHHHHHHHHHHHhC--CCCcEEEECCCCccHHHHHHHHHHhCC-------CeEEechhhCChH--hh------
Confidence 478999999999999988754 456799999999999999998876543 3577787543211 00
Q ss_pred HHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCC-h
Q 014789 109 LCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD-A 187 (418)
Q Consensus 109 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~-~ 187 (418)
...+... ...+++|||+|.+....|..|..+++... ..++.+|++||... -
T Consensus 68 ----------------------~~~~~~a----~~~~l~lDei~~l~~~~q~~Ll~~l~~~~--~~~~~iI~~tn~~~~~ 119 (143)
T 3co5_A 68 ----------------------MELLQKA----EGGVLYVGDIAQYSRNIQTGITFIIGKAE--RCRVRVIASCSYAAGS 119 (143)
T ss_dssp ----------------------HHHHHHT----TTSEEEEEECTTCCHHHHHHHHHHHHHHT--TTTCEEEEEEEECTTT
T ss_pred ----------------------hhHHHhC----CCCeEEEeChHHCCHHHHHHHHHHHHhCC--CCCEEEEEecCCCHHH
Confidence 0111111 12478999999998877777777666532 35677888888642 1
Q ss_pred HHH-HHHHhhcccCceEEEecCCC
Q 014789 188 DQL-LEKRVRSRFSHRKLLFLPPS 210 (418)
Q Consensus 188 ~~~-l~~~v~sr~~~~~i~~~~~~ 210 (418)
... +.+.+..|+....|.+||+.
T Consensus 120 ~~~~~~~~L~~rl~~~~i~lPpLr 143 (143)
T 3co5_A 120 DGISCEEKLAGLFSESVVRIPPLS 143 (143)
T ss_dssp C--CHHHHHHHHSSSEEEEECCCC
T ss_pred HHhCccHHHHHHhcCcEEeCCCCC
Confidence 111 77888899887788999873
No 79
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.36 E-value=4.1e-13 Score=123.92 Aligned_cols=140 Identities=16% Similarity=0.108 Sum_probs=79.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 131 (418)
.+..++|+||||||||++++++++.+. ..+++++|....+.. ..+ .......++
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~------~~~i~v~~~~l~~~~--~g~------------------~~~~i~~~f 88 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG------INPIMMSAGELESGN--AGE------------------PAKLIRQRY 88 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT------CCCEEEEHHHHHCC-----H------------------HHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC------CCEEEEeHHHhhhcc--Cch------------------hHHHHHHHH
Confidence 367899999999999999999999985 334777774432210 000 001111111
Q ss_pred HHHhhcCCCceEEEEEecchhhhhhcc----h---------hHHHHHHhhhc----------cCCCcEEEEEeccCCChH
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQGK----Q---------RLLYSLLDAMQ----------SVTSQAVVIGVSCRLDAD 188 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~~~----~---------~~L~~l~~~~~----------~~~~~~~lI~~s~~~~~~ 188 (418)
...........+.||+|||+|.+.... + ..|..+++-.. ....++.+|++||..+
T Consensus 89 ~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-- 166 (293)
T 3t15_A 89 REAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-- 166 (293)
T ss_dssp HHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC--
T ss_pred HHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc--
Confidence 111100013468999999999988731 1 34444443111 1235789999999854
Q ss_pred HHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 189 QLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 189 ~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
.+++.+.+ ||. ..+. .| +.++..+|++..+.
T Consensus 167 -~ld~al~R~~R~d-~~i~-~P-~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 167 -TLYAPLIRDGRME-KFYW-AP-TREDRIGVCTGIFR 199 (293)
T ss_dssp -C--CHHHHHHHEE-EEEE-CC-CHHHHHHHHHHHHG
T ss_pred -cCCHHHhCCCCCc-eeEe-Cc-CHHHHHHHHHHhcc
Confidence 45556654 674 3343 33 99999999997764
No 80
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.29 E-value=3.5e-14 Score=148.26 Aligned_cols=161 Identities=19% Similarity=0.323 Sum_probs=106.7
Q ss_pred CCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDC 99 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~ 99 (418)
.+.|.++..+.|.+.+...+.. ..+.+++|+||||||||++++.++..+... ++.++|....+.+
T Consensus 478 di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~------~i~v~~~~l~~~~ 551 (806)
T 1ypw_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN------FISIKGPELLTMW 551 (806)
T ss_dssp SSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC------CCCCCCSSSTTCC
T ss_pred ccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC------EEEEechHhhhhh
Confidence 4677777777777665422111 246789999999999999999999988533 3566665543210
Q ss_pred HHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----------chhHHHHHHhh
Q 014789 100 CAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----------KQRLLYSLLDA 168 (418)
Q Consensus 100 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----------~~~~L~~l~~~ 168 (418)
+ +........+++..... .|.||+|||+|.+... ...++..|+..
T Consensus 552 --~------------------g~~~~~i~~~f~~a~~~----~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ 607 (806)
T 1ypw_A 552 --F------------------GESEANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTE 607 (806)
T ss_dssp --T------------------TTSSHHHHHHHHHHHHH----CSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTT
T ss_pred --c------------------CccHHHHHHHHHHHHhc----CCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHH
Confidence 0 01111222233333322 4679999999998643 23456666665
Q ss_pred hcc--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 169 MQS--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 169 ~~~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
... ...++.||++||.. +.+++++.+ ||. ..|.|++|+.++..+|++.++.
T Consensus 608 ld~~~~~~~v~vI~tTN~~---~~ld~allrpgRf~-~~i~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 608 MDGMSTKKNVFIIGATNRP---DIIDPAILRPGRLD-QLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp CC------CCBCCCCCBSC---GGGSCTTSSGGGTT-SCCCCCCCCCSHHHHHTTTTTS
T ss_pred HhcccccCCeEEEEecCCc---ccCCHHHhCccccC-ceeecCCCCHHHHHHHHHHHhc
Confidence 542 23578899999984 457888888 996 5789999999999999999875
No 81
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.29 E-value=2.5e-10 Score=109.82 Aligned_cols=143 Identities=16% Similarity=0.200 Sum_probs=86.6
Q ss_pred EEEEEecchhhhhhc------------chhHHHHHHhhhc-------cCCCcEEEEEec-----cCCChHHHHHHHhhcc
Q 014789 143 TIIFVLDEFDLFAQG------------KQRLLYSLLDAMQ-------SVTSQAVVIGVS-----CRLDADQLLEKRVRSR 198 (418)
Q Consensus 143 ~~viilDEid~l~~~------------~~~~L~~l~~~~~-------~~~~~~~lI~~s-----~~~~~~~~l~~~v~sr 198 (418)
..++++||+|.+... .|+.|..+++-.+ ...+++.+|+++ ++.+ +.|.+.+|
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~d----lipel~~R 326 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSD----LIPELQGR 326 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGG----SCHHHHTT
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhh----cchHHhcc
Confidence 458899999999753 2346666665322 134678888887 4433 34789999
Q ss_pred cCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH-----HHhCChhHHHHHHHHhc-----cccCHHHH
Q 014789 199 FSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK-----NILADGRFKEIVNTLVN-----LDSTVNHL 268 (418)
Q Consensus 199 ~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-----~~gd~r~~ 268 (418)
|. ..+.|++|+.+++.+|+..--. ..+.+|.+... -.|+++++..+++..+. ...++|.+
T Consensus 327 ~~-i~i~l~~lt~~e~~~Il~~~~~---------~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L 396 (444)
T 1g41_A 327 LP-IRVELTALSAADFERILTEPHA---------SLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRL 396 (444)
T ss_dssp CC-EEEECCCCCHHHHHHHHHSSTT---------CHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHH
T ss_pred cc-eeeeCCCCCHHHHHHHHHHHHH---------hHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHH
Confidence 96 5689999999999999953100 11223322211 12566677777766543 34566766
Q ss_pred HHHHHHHhhcc-----cc--cCCCCChhhHHHHHhccC
Q 014789 269 LRFLFLAVSYM-----DL--ESGFLSFENFKTALSNSH 299 (418)
Q Consensus 269 ~~~l~~a~~~a-----~~--~~~~it~~~v~~a~~~~~ 299 (418)
..++...+..+ +. ..-.|+.+.|.+.+....
T Consensus 397 ~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 434 (444)
T 1g41_A 397 HTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 434 (444)
T ss_dssp HHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCccc
Confidence 55555433221 11 223588888887665543
No 82
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.27 E-value=2.3e-11 Score=126.98 Aligned_cols=153 Identities=18% Similarity=0.300 Sum_probs=99.2
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhC-C---CCeEEEEEccccCCChHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEY-P---DTISVIKLNGLLHSDDCCAFKE 104 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~-~---~~~~~v~in~~~~~~~~~~~~~ 104 (418)
.++||+++++.+...+. ....++++|+||||||||++++.+++.+.... + ....++.+++ ... +
T Consensus 181 ~iiG~~~~i~~l~~~l~----~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~---~-- 248 (758)
T 3pxi_A 181 PVIGRSKEIQRVIEVLS----RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTK---Y-- 248 (758)
T ss_dssp CCCCCHHHHHHHHHHHH----CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred CccCchHHHHHHHHHHh----CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---ccc---c--
Confidence 58999999999888764 35677899999999999999999999985432 1 1234455554 100 0
Q ss_pred HHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 105 IARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 105 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
.+.++.....+++.+.. ..+.||+|| .....++.|.. ..+ ...+.+|++||.
T Consensus 249 ---------------~G~~e~~l~~~~~~~~~----~~~~iLfiD----~~~~~~~~L~~---~l~--~~~v~~I~at~~ 300 (758)
T 3pxi_A 249 ---------------RGEFEDRLKKVMDEIRQ----AGNIILFID----AAIDASNILKP---SLA--RGELQCIGATTL 300 (758)
T ss_dssp -------------------CTTHHHHHHHHHT----CCCCEEEEC----C--------CC---CTT--SSSCEEEEECCT
T ss_pred ---------------cchHHHHHHHHHHHHHh----cCCEEEEEc----CchhHHHHHHH---HHh--cCCEEEEeCCCh
Confidence 01222233334444433 257899999 11112222322 222 467899999999
Q ss_pred CChHH--HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 185 LDADQ--LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 185 ~~~~~--~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
.++.. .+++++.+|| ..|.|++|+.+++.+|++..+.
T Consensus 301 ~~~~~~~~~d~al~rRf--~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 301 DEYRKYIEKDAALERRF--QPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp TTTHHHHTTCSHHHHSE--EEEECCCCCHHHHHHHHHHTTT
T ss_pred HHHHHHhhccHHHHhhC--cEEEeCCCCHHHHHHHHHHHHH
Confidence 87544 3578999999 5699999999999999997664
No 83
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.22 E-value=1.4e-10 Score=117.65 Aligned_cols=141 Identities=13% Similarity=0.155 Sum_probs=92.0
Q ss_pred EEEEEecchhhhhhcchhHHHHHHhhhc------------------cCCCcEEEEEeccCCChHHHHHHHhhcccCc--e
Q 014789 143 TIIFVLDEFDLFAQGKQRLLYSLLDAMQ------------------SVTSQAVVIGVSCRLDADQLLEKRVRSRFSH--R 202 (418)
Q Consensus 143 ~~viilDEid~l~~~~~~~L~~l~~~~~------------------~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~--~ 202 (418)
+.+++|||++.+....|..|..+++... ..+.++.+|+++|+. ..+.+++.+.+||.. .
T Consensus 202 ~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~-~~~~l~~~l~~R~~v~~i 280 (604)
T 3k1j_A 202 KGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD-TVDKMHPALRSRIRGYGY 280 (604)
T ss_dssp TSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH-HHHHSCHHHHHHHHHHSE
T ss_pred CCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH-HHhhcCHHHHHHhhccce
Confidence 3499999999997767777877776322 112467899999874 345788999999852 2
Q ss_pred EEEecCC---CHHHHHHHHHHHhcCCCCCCCChHHHHHHHHH-HHHHhCChhHHHHHHHHhcccc-------CHHHHHHH
Q 014789 203 KLLFLPP---SKEDMQRLLEHILSLPVDSSLPHAYAVEFNKK-IKNILADGRFKEIVNTLVNLDS-------TVNHLLRF 271 (418)
Q Consensus 203 ~i~~~~~---~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g-------d~r~~~~~ 271 (418)
.+.|++. +.+.+..++..... .+... ....++++++..+++......| ++|.+.++
T Consensus 281 ~i~l~~~~~~~~~~~~~~l~~~~~-------------~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~l 347 (604)
T 3k1j_A 281 EVYMRTTMPDTIENRRKLVQFVAQ-------------EVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGI 347 (604)
T ss_dssp EEECCSEEECCHHHHHHHHHHHHH-------------HHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHH
T ss_pred EeeccccccCCHHHHHHHHHHHHH-------------HHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHH
Confidence 4555443 34445555533211 00000 0013466667777766554445 69999999
Q ss_pred HHHHhhccc-ccCCCCChhhHHHHHhc
Q 014789 272 LFLAVSYMD-LESGFLSFENFKTALSN 297 (418)
Q Consensus 272 l~~a~~~a~-~~~~~it~~~v~~a~~~ 297 (418)
++.|...|. .+...|+.+||.+|+..
T Consensus 348 lr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 348 VRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 999877765 36778999999999853
No 84
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.19 E-value=8.9e-10 Score=103.99 Aligned_cols=204 Identities=12% Similarity=0.079 Sum_probs=131.0
Q ss_pred hcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHH
Q 014789 49 TEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQ 128 (418)
Q Consensus 49 ~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 128 (418)
+++-++..+++||+|.||++.++.+++.+.........++.+++ ..+ ++++...+...+
T Consensus 14 ~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~----~~~l~~~~~~~p--------------- 72 (343)
T 1jr3_D 14 NEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP--NTD----WNAIFSLCQAMS--------------- 72 (343)
T ss_dssp HHCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT--TCC----HHHHHHHHHHHH---------------
T ss_pred hcCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC--CCC----HHHHHHHhcCcC---------------
Confidence 33457788999999999999999999987654322233444543 122 344444332211
Q ss_pred HHHHHHhhcCCCceEEEEEecchhh-hhhcchhHHHHHHhhhccCCCcEEEEEeccCCCh---HHHHHHHhhcccCceEE
Q 014789 129 FMIEMLRECGLAHKTIIFVLDEFDL-FAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDA---DQLLEKRVRSRFSHRKL 204 (418)
Q Consensus 129 ~l~~~l~~~~~~~~~~viilDEid~-l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~---~~~l~~~v~sr~~~~~i 204 (418)
..+...|++|||+|. +....++.|...++.+ +...++|.+++..+- ...+.+.+.||+ ..+
T Consensus 73 ----------lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p---~~~~~~il~~~~~~~~~~~~k~~~~i~sr~--~~~ 137 (343)
T 1jr3_D 73 ----------LFASRQTLLLLLPENGPNAAINEQLLTLTGLL---HDDLLLIVRGNKLSKAQENAAWFTALANRS--VQV 137 (343)
T ss_dssp ----------HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTC---BTTEEEEEEESCCCTTTTTSHHHHHHTTTC--EEE
T ss_pred ----------CccCCeEEEEECCCCCCChHHHHHHHHHHhcC---CCCeEEEEEcCCCChhhHhhHHHHHHHhCc--eEE
Confidence 013567999999998 8766666666665543 345666666655332 346778899998 679
Q ss_pred EecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHhhcccccCC
Q 014789 205 LFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESG 284 (418)
Q Consensus 205 ~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~ 284 (418)
.|.|++.+++.+.+..++. ..++ -++++++..++.. ..||.|.+.+.+.+....+ +..
T Consensus 138 ~~~~l~~~~l~~~l~~~~~---~~g~--------------~i~~~a~~~l~~~---~~gdl~~~~~elekl~l~~--~~~ 195 (343)
T 1jr3_D 138 TCQTPEQAQLPRWVAARAK---QLNL--------------ELDDAANQVLCYC---YEGNLLALAQALERLSLLW--PDG 195 (343)
T ss_dssp EECCCCTTHHHHHHHHHHH---HTTC--------------EECHHHHHHHHHS---STTCHHHHHHHHHHHHHHC--TTC
T ss_pred EeeCCCHHHHHHHHHHHHH---HcCC--------------CCCHHHHHHHHHH---hchHHHHHHHHHHHHHHhc--CCC
Confidence 9999999999999988864 0111 1233433333332 3689999999988765543 345
Q ss_pred CCChhhHHHHHhccCCCchhhhhcCC
Q 014789 285 FLSFENFKTALSNSHRQPKLECIKDC 310 (418)
Q Consensus 285 ~it~~~v~~a~~~~~~~~~~~~l~~L 310 (418)
.||.++|.+.+.........+.+..+
T Consensus 196 ~It~e~V~~~~~~~~~~~if~l~~ai 221 (343)
T 1jr3_D 196 KLTLPRVEQAVNDAAHFTPFHWVDAL 221 (343)
T ss_dssp EECHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHhhhhcCCHHHHHHHH
Confidence 79999998877655544444444433
No 85
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.17 E-value=2.4e-12 Score=129.85 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=99.3
Q ss_pred EEEEEecchhhhhhcchhHHHHHHhhhcc----------CCCcEEEEEeccCCChHH----------HHHHHhhcccCce
Q 014789 143 TIIFVLDEFDLFAQGKQRLLYSLLDAMQS----------VTSQAVVIGVSCRLDADQ----------LLEKRVRSRFSHR 202 (418)
Q Consensus 143 ~~viilDEid~l~~~~~~~L~~l~~~~~~----------~~~~~~lI~~s~~~~~~~----------~l~~~v~sr~~~~ 202 (418)
..|++|||+|.+....+..|...++.... .+.++.+|+++|+..=.. .+.+.+.|||...
T Consensus 392 ~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~ 471 (595)
T 3f9v_A 392 GGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLI 471 (595)
T ss_dssp SSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCC
T ss_pred CCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEE
Confidence 35999999999988777778777754221 235778999999852000 4677889999643
Q ss_pred EEEecCCCHHHHHHHHHHHhcCC----CCCCCChHHHHHHHHHHHH----HhCChhHHHHHHHHhc-------------c
Q 014789 203 KLLFLPPSKEDMQRLLEHILSLP----VDSSLPHAYAVEFNKKIKN----ILADGRFKEIVNTLVN-------------L 261 (418)
Q Consensus 203 ~i~~~~~~~~e~~~il~~~l~~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-------------~ 261 (418)
+.+.++...+...|.++.+... ....++.+.+..|....+. .+++++. ..+...+. .
T Consensus 472 -~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~-~~l~~~y~~lR~~~~~~~~~~~ 549 (595)
T 3f9v_A 472 -FILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAK-NLITDFFVEMRKKSSETPDSPI 549 (595)
T ss_dssp -EEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTH-HHHHHHHTTSSCSCCBCSSSCB
T ss_pred -EEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHHHHhhccCCCccc
Confidence 4455555444556666655421 1223455555666544443 3445444 44444332 3
Q ss_pred ccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhcc
Q 014789 262 DSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNS 298 (418)
Q Consensus 262 ~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~ 298 (418)
.+++|.+..+++.|.+.|. .++..|+.+||.+|+.-+
T Consensus 550 ~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 550 LITPRQLEALIRISEAYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp CSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHH
Confidence 5799999999988777665 477899999999998643
No 86
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.17 E-value=1.2e-10 Score=121.64 Aligned_cols=162 Identities=19% Similarity=0.267 Sum_probs=109.8
Q ss_pred CCCCChhhhHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCCh
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDD 98 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~ 98 (418)
+.+.|.+++++.|.+.+...+.. ..+.+++|+||||||||++++.++..+. ..++.++|......
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~------~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG------AFFFLINGPEIMSK 277 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT------CEEEEEEHHHHSSS
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC------CcEEEEEchHhhhh
Confidence 45899999999999998775443 3467899999999999999999988654 34578887543221
Q ss_pred HHHHHHHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--------chhHHHHHHhhhc
Q 014789 99 CCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--------KQRLLYSLLDAMQ 170 (418)
Q Consensus 99 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--------~~~~L~~l~~~~~ 170 (418)
. .. ........+++.... ..+.++++||+|.+... ...++..++.+..
T Consensus 278 ~--~g------------------~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~ 333 (806)
T 1ypw_A 278 L--AG------------------ESESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 333 (806)
T ss_dssp S--TT------------------HHHHHHHHHHHHHHH----HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHH
T ss_pred h--hh------------------hHHHHHHHHHHHHHh----cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhh
Confidence 0 00 011112222222222 24789999999998764 1234444444433
Q ss_pred c--CCCcEEEEEeccCCChHHHHHHHhhc--ccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 171 S--VTSQAVVIGVSCRLDADQLLEKRVRS--RFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 171 ~--~~~~~~lI~~s~~~~~~~~l~~~v~s--r~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
. ....+.+|+++|+.+ .+++.+.+ ||. +.+.++.++.++..+|+...+.
T Consensus 334 g~~~~~~v~vI~atn~~~---~ld~al~r~gRf~-~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 334 GLKQRAHVIVMAATNRPN---SIDPALRRFGRFD-REVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp SSCTTSCCEEEEECSCTT---TSCTTTTSTTSSC-EEECCCCCCHHHHHHHHHHTTT
T ss_pred hhcccccEEEecccCCch---hcCHHHhcccccc-cccccCCCCHHHHHHHHHHHHh
Confidence 2 235789999999853 45677766 775 5688999999999999988764
No 87
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.11 E-value=1.2e-09 Score=104.57 Aligned_cols=229 Identities=17% Similarity=0.176 Sum_probs=140.2
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
..++|.+..+.++.+.+..... ...+++|+|++|||||++++.+........ -.++.+||...... .+ -+
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~--~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~---~~fv~v~~~~~~~~--~~---~~ 206 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISC--AECPVLITGESGVGKEVVARLIHKLSDRSK---EPFVALNVASIPRD--IF---EA 206 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTT--CCSCEEEECSTTSSHHHHHHHHHHHSTTTT---SCEEEEETTTSCHH--HH---HH
T ss_pred hhhhhccHHhhHHHHHHHHhcC--CCCCeEEecCCCcCHHHHHHHHHHhcCCCC---CCeEEEecCCCCHH--HH---HH
Confidence 3578888899999998888543 356789999999999999987766544322 34678899765432 21 22
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEEE
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVVI 179 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~lI 179 (418)
.+.+.....+.+.... ...+++ .. ...+|+|||++.+....|..|..+++.... ...++-+|
T Consensus 207 elfg~~~g~~tga~~~---~~g~~~---~a----~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii 276 (387)
T 1ny5_A 207 ELFGYEKGAFTGAVSS---KEGFFE---LA----DGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRIL 276 (387)
T ss_dssp HHHCBCTTSSTTCCSC---BCCHHH---HT----TTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEE
T ss_pred HhcCCCCCCCCCcccc---cCCcee---eC----CCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEE
Confidence 2322111111111000 000111 11 235889999999988888888887765321 12467789
Q ss_pred EeccCCChHHHH-----HHHhhcccCceEEEecCCC--HHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH---HhCCh
Q 014789 180 GVSCRLDADQLL-----EKRVRSRFSHRKLLFLPPS--KEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKN---ILADG 249 (418)
Q Consensus 180 ~~s~~~~~~~~l-----~~~v~sr~~~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 249 (418)
++||. ++.+.+ .+.+..|+....|.+||+. .+++..++.+.+. .++..... .++++
T Consensus 277 ~at~~-~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~-------------~~~~~~~~~~~~~~~~ 342 (387)
T 1ny5_A 277 AATNR-NIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLK-------------KFSRKYAKEVEGFTKS 342 (387)
T ss_dssp EEESS-CHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHH-------------HHHHHTTCCCCEECHH
T ss_pred EeCCC-CHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHH-------------HHHHHcCCCCCCCCHH
Confidence 98887 433333 3445567766678899997 4788877777653 11111110 13333
Q ss_pred hHHHHHHHHhccccCHHHHHHHHHHHhhcccccCCCCChhhHHHH
Q 014789 250 RFKEIVNTLVNLDSTVNHLLRFLFLAVSYMDLESGFLSFENFKTA 294 (418)
Q Consensus 250 ~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a~~~~~~it~~~v~~a 294 (418)
++..+.. +...||+|.+.+++.+|+..+. ...|+.+|+-..
T Consensus 343 a~~~l~~--~~wpGNvreL~~~i~~~~~~~~--~~~i~~~~l~~~ 383 (387)
T 1ny5_A 343 AQELLLS--YPWYGNVRELKNVIERAVLFSE--GKFIDRGELSCL 383 (387)
T ss_dssp HHHHHHH--SCCTTHHHHHHHHHHHHHHHCC--SSEECHHHHHHH
T ss_pred HHHHHHh--CCCCcHHHHHHHHHHHHHHhCC--CCcCcHHHCcHh
Confidence 3333332 4558999999999999877643 347888887543
No 88
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.10 E-value=1.8e-09 Score=102.58 Aligned_cols=215 Identities=19% Similarity=0.179 Sum_probs=132.5
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIAR 107 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 107 (418)
..++|.+..+..+...+..... ...+++++|++||||+++++.+........ . ++.+||...... . +.+
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~--~~~~vli~GesGtGKe~lAr~ih~~s~r~~---~-fv~vnc~~~~~~--~---~~~ 197 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAK--SKAPVLITGESGTGKEIVARLIHRYSGRKG---A-FVDLNCASIPQE--L---AES 197 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHT--SCSCEEEECCTTSSHHHHHHHHHHHHCCCS---C-EEEEESSSSCTT--T---HHH
T ss_pred ccccccchHHHHHHhhhhhhhc--cchhheEEeCCCchHHHHHHHHHHhccccC---C-cEEEEcccCChH--H---HHH
Confidence 4578888888888888877643 345799999999999999998765543322 2 789999876542 1 122
Q ss_pred HHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhcc--------CCCcEEEE
Q 014789 108 QLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQS--------VTSQAVVI 179 (418)
Q Consensus 108 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~--------~~~~~~lI 179 (418)
.+.+.....+.+..... ...++ .. ...+|+|||++.|....|..|..+++.... ...++-+|
T Consensus 198 ~lfg~~~g~~tga~~~~---~g~~~---~a----~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii 267 (368)
T 3dzd_A 198 ELFGHEKGAFTGALTRK---KGKLE---LA----DQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVI 267 (368)
T ss_dssp HHHEECSCSSSSCCCCE---ECHHH---HT----TTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEE
T ss_pred HhcCccccccCCccccc---CChHh---hc----CCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEE
Confidence 23211111111111000 00111 11 123799999999988888888887765321 12356789
Q ss_pred EeccCCChHHHHH-----HHhhcccCceEEEecCCCH--HHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHH---HhCCh
Q 014789 180 GVSCRLDADQLLE-----KRVRSRFSHRKLLFLPPSK--EDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKN---ILADG 249 (418)
Q Consensus 180 ~~s~~~~~~~~l~-----~~v~sr~~~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 249 (418)
++||. ++.+.+. +.+..|+....|.+||+.. +++..++.+.+. .++..... .++++
T Consensus 268 ~at~~-~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~-------------~~~~~~~~~~~~~~~~ 333 (368)
T 3dzd_A 268 SATNK-NLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLK-------------KFAKEYKKNCFELSEE 333 (368)
T ss_dssp EEESS-CHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHH-------------HHHHHTTCCCCCBCHH
T ss_pred EecCC-CHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHH-------------HHHHHcCCCCCCcCHH
Confidence 99886 4444333 3567788766789999985 788888777664 12211110 13333
Q ss_pred hHHHHHHHHhccccCHHHHHHHHHHHhhcc
Q 014789 250 RFKEIVNTLVNLDSTVNHLLRFLFLAVSYM 279 (418)
Q Consensus 250 ~~~~~~~~~~~~~gd~r~~~~~l~~a~~~a 279 (418)
++ ..+.. +...||+|.+.+++.+++..+
T Consensus 334 a~-~~L~~-~~wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 334 TK-EYLMK-QEWKGNVRELKNLIERAVILC 361 (368)
T ss_dssp HH-HHHHT-CCCTTHHHHHHHHHHHHHHTC
T ss_pred HH-HHHHh-CCCCcHHHHHHHHHHHHHHhC
Confidence 33 22322 345799999999999987664
No 89
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.09 E-value=9.5e-09 Score=104.24 Aligned_cols=168 Identities=12% Similarity=0.108 Sum_probs=98.8
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHH---hhhCCCCeEEEEEccccCCChHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDL---LLEYPDTISVIKLNGLLHSDDCCAFKE 104 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l---~~~~~~~~~~v~in~~~~~~~~~~~~~ 104 (418)
..++||+.+++.|.+.+... .+..+.+.|+|++|+|||+++..++... ...++..+.++.+... +...++..
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~---~~~~~~~~ 198 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKL--KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ---DKSGLLMK 198 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTS--TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC---CHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhcc--cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC---chHHHHHH
Confidence 56999999999999987542 2346678999999999999999998653 3334333555555432 22233333
Q ss_pred H---HHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEe
Q 014789 105 I---ARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGV 181 (418)
Q Consensus 105 i---~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~ 181 (418)
+ +..++...........+.......+...+... .++++||||+++.. ..+ ++. ..+..+|.|
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~LLVLDdv~~~-----~~l----~~l---~~~~~ilvT 263 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRK---HPRSLLILDDVWDS-----WVL----KAF---DSQCQILLT 263 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHT---CTTCEEEEEEECCH-----HHH----HTT---CSSCEEEEE
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccC---CCCeEEEEeCCCCH-----HHH----HHh---cCCCeEEEE
Confidence 3 33332111000112234455556666666542 25799999999753 222 221 234566667
Q ss_pred ccCCChHHHHHHHhhcccCceEEEe---cCCCHHHHHHHHHHHhc
Q 014789 182 SCRLDADQLLEKRVRSRFSHRKLLF---LPPSKEDMQRLLEHILS 223 (418)
Q Consensus 182 s~~~~~~~~l~~~v~sr~~~~~i~~---~~~~~~e~~~il~~~l~ 223 (418)
|..... ........+.+ .|++.++..+++..++.
T Consensus 264 sR~~~~--------~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~ 300 (591)
T 1z6t_A 264 TRDKSV--------TDSVMGPKYVVPVESSLGKEKGLEILSLFVN 300 (591)
T ss_dssp ESCGGG--------GTTCCSCEEEEECCSSCCHHHHHHHHHHHHT
T ss_pred CCCcHH--------HHhcCCCceEeecCCCCCHHHHHHHHHHHhC
Confidence 655321 11111123333 48999999999998874
No 90
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.05 E-value=1.7e-10 Score=94.95 Aligned_cols=105 Identities=14% Similarity=0.203 Sum_probs=70.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 131 (418)
.+..++|+||+|+|||++++.++..+.... ..++++++...... .
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g---~~~~~~~~~~~~~~-------------~------------------- 79 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG---KNAAYIDAASMPLT-------------D------------------- 79 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTT---CCEEEEETTTSCCC-------------G-------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcC---CcEEEEcHHHhhHH-------------H-------------------
Confidence 577899999999999999999999886532 45677777554332 0
Q ss_pred HHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccC-CChHHHHHHHhhcccC
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCR-LDADQLLEKRVRSRFS 200 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~-~~~~~~l~~~v~sr~~ 200 (418)
.+ ..+-+++|||++.+....+..|+.+++........ .+|.+++. ..-.... +++.||+.
T Consensus 80 -~~------~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~-~iiits~~~p~~l~~~-~~L~SRl~ 140 (149)
T 2kjq_A 80 -AA------FEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKG-FLLLGSEYTPQQLVIR-EDLRTRMA 140 (149)
T ss_dssp -GG------GGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCC-EEEEEESSCTTTSSCC-HHHHHHGG
T ss_pred -HH------hCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCc-EEEEECCCCHHHcccc-HHHHHHHh
Confidence 01 13568999999987765678888888765433222 24445553 2212223 88899986
No 91
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.99 E-value=2.7e-09 Score=92.56 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=67.4
Q ss_pred CCCChhhhHHHHHHHHHHHHhcC----CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEA----CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKE 104 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~----~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~ 104 (418)
.+++.+.....+...+...+... .+.+++|+||+|||||++++.++..+.... ..+++++|. .++..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~---~~~~~~~~~------~~~~~ 96 (202)
T 2w58_A 26 DVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRN---VSSLIVYVP------ELFRE 96 (202)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTT---CCEEEEEHH------HHHHH
T ss_pred hccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEhH------HHHHH
Confidence 45554433333333444444433 237899999999999999999999887543 445666653 12222
Q ss_pred HHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc--chh-HHHHHHhhhccCCCcEEEEEe
Q 014789 105 IARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG--KQR-LLYSLLDAMQSVTSQAVVIGV 181 (418)
Q Consensus 105 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~--~~~-~L~~l~~~~~~~~~~~~lI~~ 181 (418)
+..... ..... .+.+.+.. +.+|+|||++..... .+. +++.+++.... ....+|.+
T Consensus 97 ~~~~~~---------~~~~~----~~~~~~~~------~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~--~~~~~i~t 155 (202)
T 2w58_A 97 LKHSLQ---------DQTMN----EKLDYIKK------VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMF--ENLPTFFT 155 (202)
T ss_dssp HHHC------------CCCH----HHHHHHHH------SSEEEEEEECCC---CCGGGTTHHHHHHHHHH--TTCCEEEE
T ss_pred HHHHhc---------cchHH----HHHHHhcC------CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHh--CCCCEEEE
Confidence 222110 01111 22333333 239999999764332 344 55566654322 22346666
Q ss_pred ccC
Q 014789 182 SCR 184 (418)
Q Consensus 182 s~~ 184 (418)
||.
T Consensus 156 sn~ 158 (202)
T 2w58_A 156 SNF 158 (202)
T ss_dssp ESS
T ss_pred cCC
Confidence 665
No 92
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.96 E-value=4.9e-09 Score=89.19 Aligned_cols=122 Identities=10% Similarity=0.086 Sum_probs=68.5
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh
Q 014789 34 DSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH 113 (418)
Q Consensus 34 ~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~ 113 (418)
...++.+..++... ....+..++|+||+|+|||++++.++..+....+ ..++++++ ..++..+.......
T Consensus 20 ~~~~~~~~~~~~~~-~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g--~~~~~~~~------~~~~~~~~~~~~~~- 89 (180)
T 3ec2_A 20 NRALLTIRVFVHNF-NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG--IRGYFFDT------KDLIFRLKHLMDEG- 89 (180)
T ss_dssp HHHHHHHHHHHHSC-CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC--CCCCEEEH------HHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhc-cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC--CeEEEEEH------HHHHHHHHHHhcCc-
Confidence 33444444444332 2234778999999999999999999998874332 22344442 22233333222111
Q ss_pred hcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhh--hhcchhHHHHHHhhhccCCCcEEEEEeccCC
Q 014789 114 QLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLF--AQGKQRLLYSLLDAMQSVTSQAVVIGVSCRL 185 (418)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l--~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~ 185 (418)
... .+.+.+. .+-+|||||++.. ....+..++.+++.... ....+|.+||..
T Consensus 90 --------~~~----~~~~~~~------~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~--~~~~ii~tsn~~ 143 (180)
T 3ec2_A 90 --------KDT----KFLKTVL------NSPVLVLDDLGSERLSDWQRELISYIITYRYN--NLKSTIITTNYS 143 (180)
T ss_dssp --------CCS----HHHHHHH------TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH--TTCEEEEECCCC
T ss_pred --------hHH----HHHHHhc------CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH--cCCCEEEEcCCC
Confidence 011 1222232 3569999999843 33356678887765432 234566777764
No 93
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.92 E-value=5.3e-08 Score=97.70 Aligned_cols=165 Identities=15% Similarity=0.121 Sum_probs=102.8
Q ss_pred CChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHH----HHhhhCCCCeEEEEEccccCC--ChHHHHHH
Q 014789 31 DSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILT----DLLLEYPDTISVIKLNGLLHS--DDCCAFKE 104 (418)
Q Consensus 31 ~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~----~l~~~~~~~~~~v~in~~~~~--~~~~~~~~ 104 (418)
+||++++++|.+.|... .......+.|+|+.|+|||++++.+++ .....+. ..++++..... +...++..
T Consensus 131 ~GR~~~~~~l~~~L~~~-~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~---~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYD---SIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBS---EEEEEECCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc-cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCC---cEEEEEECCCCCCCHHHHHHH
Confidence 59999999999998653 223456788999999999999999996 3333331 23344333322 45678888
Q ss_pred HHHHHHHhhh-cccc--cCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEe
Q 014789 105 IARQLCMEHQ-LLFS--KMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGV 181 (418)
Q Consensus 105 i~~~l~~~~~-~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~ 181 (418)
++.+++.... ..+. ...........+.+.+... +..+||||+++.... + .|+.. ....||.|
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~----kr~LlVLDdv~~~~~-----~----~~~~~--~gs~ilvT 271 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDR----PNTLFVFDDVVQEET-----I----RWAQE--LRLRCLVT 271 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTS----TTEEEEEEEECCHHH-----H----HHHHH--TTCEEEEE
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCC----CcEEEEEECCCCchh-----h----ccccc--CCCEEEEE
Confidence 8888865421 0011 1112233455566666431 278999999987521 1 12221 23356666
Q ss_pred ccCCChHHHHHHHhhcccC--ceEEEecCCCHHHHHHHHHHHh
Q 014789 182 SCRLDADQLLEKRVRSRFS--HRKLLFLPPSKEDMQRLLEHIL 222 (418)
Q Consensus 182 s~~~~~~~~l~~~v~sr~~--~~~i~~~~~~~~e~~~il~~~l 222 (418)
|.... +...+. ...+.+.+++.++-.+++..+.
T Consensus 272 TR~~~--------v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 306 (549)
T 2a5y_B 272 TRDVE--------ISNAASQTCEFIEVTSLEIDECYDFLEAYG 306 (549)
T ss_dssp ESBGG--------GGGGCCSCEEEEECCCCCHHHHHHHHHHTS
T ss_pred cCCHH--------HHHHcCCCCeEEECCCCCHHHHHHHHHHHh
Confidence 65532 222232 2458899999999999999884
No 94
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.86 E-value=2.4e-07 Score=101.98 Aligned_cols=172 Identities=9% Similarity=0.062 Sum_probs=101.2
Q ss_pred CCCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHh---hhCCCCeEEEEEccccCCChHHHHHH
Q 014789 28 HLSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLL---LEYPDTISVIKLNGLLHSDDCCAFKE 104 (418)
Q Consensus 28 ~~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~---~~~~~~~~~v~in~~~~~~~~~~~~~ 104 (418)
..++||++++++|.+.|... ......+.|+|+.|+|||+++..++.... ..++..+.++.+...........+..
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~--~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKL--NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTT--TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred ceeccHHHHHHHHHHHHhhc--cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 46899999999999988542 23456788999999999999999887642 22333344555443222222333555
Q ss_pred HHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 105 IARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 105 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
++..+..............++..+.+...+.. ++++.+||||+++... .+..+ .....||.||..
T Consensus 202 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~LlvlDd~~~~~-----~~~~~-------~~~~~ilvTtR~ 266 (1249)
T 3sfz_A 202 LCMRLDQEESFSQRLPLNIEEAKDRLRVLMLR---KHPRSLLILDDVWDPW-----VLKAF-------DNQCQILLTTRD 266 (1249)
T ss_dssp HHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSS---SSCSCEEEEESCCCHH-----HHTTT-------CSSCEEEEEESS
T ss_pred HHHHhhhhcccccCCCCCHHHHHHHHHHHHhc---cCCCEEEEEecCCCHH-----HHHhh-------cCCCEEEEEcCC
Confidence 66665443211111122344444444444433 2347899999998542 12111 233466777765
Q ss_pred CChHHHHHHHhhcccC-ceEEEecC-CCHHHHHHHHHHHhc
Q 014789 185 LDADQLLEKRVRSRFS-HRKLLFLP-PSKEDMQRLLEHILS 223 (418)
Q Consensus 185 ~~~~~~l~~~v~sr~~-~~~i~~~~-~~~~e~~~il~~~l~ 223 (418)
..... .... ...+.+++ ++.++-.+++..+..
T Consensus 267 ~~~~~-------~~~~~~~~~~~~~~l~~~~a~~l~~~~~~ 300 (1249)
T 3sfz_A 267 KSVTD-------SVMGPKHVVPVESGLGREKGLEILSLFVN 300 (1249)
T ss_dssp TTTTT-------TCCSCBCCEECCSSCCHHHHHHHHHHHHT
T ss_pred HHHHH-------hhcCCceEEEecCCCCHHHHHHHHHHhhC
Confidence 43211 1111 24567775 999999999988764
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.74 E-value=3.4e-08 Score=113.19 Aligned_cols=163 Identities=17% Similarity=0.169 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcc
Q 014789 37 YSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLL 116 (418)
Q Consensus 37 ~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~ 116 (418)
.......+...+.. +.+++++||||||||++++.++.... ...++.+|+...++...+.+.+-..+....
T Consensus 1253 T~R~~~ll~~~l~~--~~~vLL~GPpGtGKT~la~~~l~~~~-----~~~~~~infsa~ts~~~~~~~i~~~~~~~~--- 1322 (2695)
T 4akg_A 1253 TIKHEKIFYDLLNS--KRGIILCGPPGSGKTMIMNNALRNSS-----LYDVVGINFSKDTTTEHILSALHRHTNYVT--- 1322 (2695)
T ss_dssp HHHHHHHHHHHHHH--TCEEEEECSTTSSHHHHHHHHHHSCS-----SCEEEEEECCTTCCHHHHHHHHHHHBCCEE---
T ss_pred hHHHHHHHHHHHHC--CCeEEEECCCCCCHHHHHHHHHhcCC-----CCceEEEEeecCCCHHHHHHHHHHHhhhcc---
Confidence 34444556666654 46899999999999999988776532 256778888877775433322222111000
Q ss_pred cccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc------chhHHHHHHhhhcc---C------CCcEEEEEe
Q 014789 117 FSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG------KQRLLYSLLDAMQS---V------TSQAVVIGV 181 (418)
Q Consensus 117 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~------~~~~L~~l~~~~~~---~------~~~~~lI~~ 181 (418)
...+..+ .....+++.|++|||++.-... ..++|.++++...- . -.++.+||+
T Consensus 1323 ~~~g~~~------------~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA 1390 (2695)
T 4akg_A 1323 TSKGLTL------------LPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGA 1390 (2695)
T ss_dssp ETTTEEE------------EEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEE
T ss_pred ccCCccc------------cCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEe
Confidence 0000000 0000235689999998764333 23566666653210 0 035899999
Q ss_pred ccCCC-hH-HHHHHHhhcccCceEEEecCCCHHHHHHHHHHHhc
Q 014789 182 SCRLD-AD-QLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILS 223 (418)
Q Consensus 182 s~~~~-~~-~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~ 223 (418)
+|+.. .. ..+++++.+|| ..+.+++++.+++..|+...+.
T Consensus 1391 ~Npp~~gGR~~l~~rllRrf--~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1391 CNPPTDPGRIPMSERFTRHA--AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp ECCTTSTTCCCCCHHHHTTE--EEEECCCCTTTHHHHHHHHHHH
T ss_pred cCCCccCCCccCChhhhhee--eEEEeCCCCHHHHHHHHHHHHH
Confidence 99863 11 25688999999 6799999999999999988764
No 96
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.48 E-value=2.4e-07 Score=85.65 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=30.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh-hhCCCCeEEEEEcc
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL-LEYPDTISVIKLNG 92 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~-~~~~~~~~~v~in~ 92 (418)
+.+++|+||||||||+++.+++..+. ... ..++++++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g---~~v~~~~~ 189 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG---VSTTLLHF 189 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC---CCEEEEEH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC---CcEEEEEH
Confidence 57999999999999999999999887 543 44555554
No 97
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.43 E-value=2.1e-07 Score=89.13 Aligned_cols=227 Identities=11% Similarity=-0.029 Sum_probs=116.8
Q ss_pred CCChhhhHHHHHHHHHHHHhcCC-----CceEEEECCCCCchHHHHHHH-HHHHhhhCCCCeEEEEEccccCCChHHHHH
Q 014789 30 SDSPDSNYSKLKFLVSSSVTEAC-----NNSILLLGPRGSGKIAVLELI-LTDLLLEYPDTISVIKLNGLLHSDDCCAFK 103 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~~~-----~~~ill~G~~GtGKT~l~~~~-~~~l~~~~~~~~~~v~in~~~~~~~~~~~~ 103 (418)
+.|.+.....|.-. +.++. .-++||.|+||+ ||.+++.+ .+.+.. .++..+.. .+...+..
T Consensus 215 I~G~e~vK~aLll~----L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR-------~~ft~g~~-ss~~gLt~ 281 (506)
T 3f8t_A 215 LPGAEEVGKMLALQ----LFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPR-------GVYVDLRR-TELTDLTA 281 (506)
T ss_dssp STTCHHHHHHHHHH----HTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS-------EEEEEGGG-CCHHHHSE
T ss_pred cCCCHHHHHHHHHH----HcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCC-------eEEecCCC-CCccCceE
Confidence 78887754444333 23221 228999999999 99999999 554321 23444322 12111110
Q ss_pred HHHHHHHHhhhcccccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhc------cCCCcEE
Q 014789 104 EIARQLCMEHQLLFSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ------SVTSQAV 177 (418)
Q Consensus 104 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~------~~~~~~~ 177 (418)
. . . .. .+ +. .....+. +. ...++++||++.+..+.|..|...++..+ ..+.++.
T Consensus 282 s----~--r---~~-tG--~~-~~~G~l~-LA------dgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~ 341 (506)
T 3f8t_A 282 V----L--K---ED-RG--WA-LRAGAAV-LA------DGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCA 341 (506)
T ss_dssp E----E--E---ES-SS--EE-EEECHHH-HT------TTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCE
T ss_pred E----E--E---cC-CC--cc-cCCCeeE-Ec------CCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeE
Confidence 0 0 0 00 00 10 0000000 11 23589999999998877777777765432 2246789
Q ss_pred EEEeccCCChHH---------HHHHHhhcccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHH-H---
Q 014789 178 VIGVSCRLDADQ---------LLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIK-N--- 244 (418)
Q Consensus 178 lI~~s~~~~~~~---------~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~-~--- 244 (418)
||+++|+.. .. .|.+.+.|||....+....++.++-.+ .....++.+.+..|-...+ .
T Consensus 342 VIAA~NP~~-~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e--------~~~~~ls~e~L~~yi~~ar~~~~~ 412 (506)
T 3f8t_A 342 VLAAINPGE-QWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEE--------QDTEVPSYTLLRRYLLYAIREHPA 412 (506)
T ss_dssp EEEEECCCC---CCSCGGGGCCSCHHHHTTCSEEEETTC----------------------CCHHHHHHHHHHHHHHCSC
T ss_pred EEEEeCccc-ccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhc--------ccCCCCCHHHHHHHHHHHHhcCCC
Confidence 999999976 22 456788899963222222222111000 0001223333333333333 1
Q ss_pred HhCChhHHHHHHHHh----------------ccccCHHHHHHHHHHHhhccc-ccCCCCChhhHHHHHhcc
Q 014789 245 ILADGRFKEIVNTLV----------------NLDSTVNHLLRFLFLAVSYMD-LESGFLSFENFKTALSNS 298 (418)
Q Consensus 245 ~~~~~~~~~~~~~~~----------------~~~gd~r~~~~~l~~a~~~a~-~~~~~it~~~v~~a~~~~ 298 (418)
..-++.+.+.+...+ ...-.+|.+..+++.|-+.|. .++..|+++||..|+.-+
T Consensus 413 p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~ 483 (506)
T 3f8t_A 413 PELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELV 483 (506)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHH
Confidence 111112222211111 123478999888887766665 488899999999988654
No 98
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.43 E-value=4.2e-06 Score=87.61 Aligned_cols=171 Identities=12% Similarity=0.058 Sum_probs=100.0
Q ss_pred CCCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHH--HhhhCCCCeEEEEEccccCCChHHHHHHHH
Q 014789 29 LSDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTD--LLLEYPDTISVIKLNGLLHSDDCCAFKEIA 106 (418)
Q Consensus 29 ~l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~--l~~~~~~~~~~v~in~~~~~~~~~~~~~i~ 106 (418)
..+||+.+++.|.+.+... ...+.+.|+|+.|+|||++++.+++. +...++....++ +.....+...++..+.
T Consensus 129 ~~VGRe~eLeeL~elL~~~---d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WV--sVs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL---RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL--NLKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC---CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEE--ECCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc---CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEE--EeCCCCCHHHHHHHHH
Confidence 4599999999999988642 23567889999999999999999863 444443223444 4334445566677777
Q ss_pred HHHHHhhhc---ccccCC----ChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEE
Q 014789 107 RQLCMEHQL---LFSKMA----SFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVI 179 (418)
Q Consensus 107 ~~l~~~~~~---~~~~~~----~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI 179 (418)
..++..... ....+. ..++..+.+.+.+... .++.++||||+++.. ..+..+ . ....+|
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l--~~KRvLLVLDDVwd~-----eqLe~f-~------pGSRIL 269 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK--PYENCLLVLLNVQNA-----KAWNAF-N------LSCKIL 269 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHS--TTSSCEEEEESCCCH-----HHHHHH-H------SSCCEE
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhh--cCCCEEEEEeCcChH-----HHHHhh-C------CCeEEE
Confidence 765432100 000001 1122334444544221 246899999999873 233222 1 233466
Q ss_pred EeccCCChHHHHHHHhhcccCceEEEec----CCCHHHHHHHHHHHhc
Q 014789 180 GVSCRLDADQLLEKRVRSRFSHRKLLFL----PPSKEDMQRLLEHILS 223 (418)
Q Consensus 180 ~~s~~~~~~~~l~~~v~sr~~~~~i~~~----~~~~~e~~~il~~~l~ 223 (418)
.+|........+... +. ..+.++ +++.++..+++..++.
T Consensus 270 VTTRd~~Va~~l~g~---~v--y~LeL~d~dL~LS~eEA~eLF~~~~g 312 (1221)
T 1vt4_I 270 LTTRFKQVTDFLSAA---TT--THISLDHHSMTLTPDEVKSLLLKYLD 312 (1221)
T ss_dssp EECSCSHHHHHHHHH---SS--CEEEECSSSSCCCHHHHHHHHHHHHC
T ss_pred EeccChHHHHhcCCC---eE--EEecCccccCCcCHHHHHHHHHHHcC
Confidence 666654332222111 11 234444 8899999999988864
No 99
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.36 E-value=2.3e-07 Score=79.12 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 41 KFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 41 ~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
...+...+++-+ .++++|+||||||||+++.++++.+.
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344444444322 46799999999999999999998874
No 100
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.33 E-value=2.4e-05 Score=90.27 Aligned_cols=144 Identities=14% Similarity=0.160 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcc
Q 014789 37 YSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLL 116 (418)
Q Consensus 37 ~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~ 116 (418)
.+.....+..++.. ..+.++.||+|||||++++.+++.+... ++.+||....+... +..++..+
T Consensus 631 tdr~~~tl~~Al~~--~~~~~l~GpaGtGKTe~vk~LA~~lg~~------~v~~nc~e~ld~~~-lg~~~~g~------- 694 (2695)
T 4akg_A 631 LLIGFATLTDSLHQ--KYGGCFFGPAGTGKTETVKAFGQNLGRV------VVVFNCDDSFDYQV-LSRLLVGI------- 694 (2695)
T ss_dssp HHHHHHHHHHHHHT--TCEEEEECCTTSCHHHHHHHHHHTTTCC------CEEEETTSSCCHHH-HHHHHHHH-------
T ss_pred HHHHHHHHHHHHHh--CCCCcccCCCCCCcHHHHHHHHHHhCCc------EEEEECCCCCChhH-hhHHHHHH-------
Confidence 34444455555554 3467899999999999999999988754 37889998877533 23232222
Q ss_pred cccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHh----hhc-------------cCCCcEEEE
Q 014789 117 FSKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLD----AMQ-------------SVTSQAVVI 179 (418)
Q Consensus 117 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~----~~~-------------~~~~~~~lI 179 (418)
.. .+..+++|||+.+.....+++...++ ... ....++.++
T Consensus 695 -----------------~~------~Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vf 751 (2695)
T 4akg_A 695 -----------------TQ------IGAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVF 751 (2695)
T ss_dssp -----------------HH------HTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEE
T ss_pred -----------------Hh------cCCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEE
Confidence 11 23689999999987764444422221 110 012456677
Q ss_pred EeccCCChH--HHHHHHhhcccCceEEEecCCCHHHHHHHHHHHh
Q 014789 180 GVSCRLDAD--QLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHIL 222 (418)
Q Consensus 180 ~~s~~~~~~--~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l 222 (418)
++.|+- +. ..|.+.+++|| +.+.+..++.+.+.+|+....
T Consensus 752 iT~NPg-y~g~~eLP~~Lk~~F--r~v~m~~Pd~~~i~ei~l~s~ 793 (2695)
T 4akg_A 752 ITLNPG-YNGRSELPENLKKSF--REFSMKSPQSGTIAEMILQIM 793 (2695)
T ss_dssp EEECCC-SSSSCCCCHHHHTTE--EEEECCCCCHHHHHHHHHHHH
T ss_pred EEeCCC-ccCcccccHHHHhhe--EEEEeeCCCHHHHHHHHHHhc
Confidence 777752 21 23456778899 678999999999999876553
No 101
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.29 E-value=2.9e-06 Score=98.26 Aligned_cols=160 Identities=16% Similarity=0.171 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccc
Q 014789 39 KLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFS 118 (418)
Q Consensus 39 ~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~ 118 (418)
.....+...+.. +.+++|+||||||||+++..++..+. ...++.+|+...++...+...+-..+..... .
T Consensus 1292 R~~~ll~~ll~~--~~pvLL~GptGtGKT~li~~~L~~l~-----~~~~~~infS~~Tta~~l~~~~e~~~e~~~~---~ 1361 (3245)
T 3vkg_A 1292 RHVDVLHAWLSE--HRPLILCGPPGSGKTMTLTSTLRAFP-----DFEVVSLNFSSATTPELLLKTFDHHCEYKRT---P 1361 (3245)
T ss_dssp HHHHHHHHHHHT--TCCCEEESSTTSSHHHHHHHHGGGCT-----TEEEEEECCCTTCCHHHHHHHHHHHEEEEEC---T
T ss_pred HHHHHHHHHHHC--CCcEEEECCCCCCHHHHHHHHHHhCC-----CCceEEEEeeCCCCHHHHHHHHhhcceEEec---c
Confidence 344455555553 56899999999999999887765543 2567889998888875544443222110000 0
Q ss_pred c-CCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc------chhHHHHHHhhhc---cC------CCcEEEEEec
Q 014789 119 K-MASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG------KQRLLYSLLDAMQ---SV------TSQAVVIGVS 182 (418)
Q Consensus 119 ~-~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~------~~~~L~~l~~~~~---~~------~~~~~lI~~s 182 (418)
. |.-+ .....++.+|++|||++.-... ..++|..+++... .. -.++.+|++.
T Consensus 1362 ~~G~~~------------~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaam 1429 (3245)
T 3vkg_A 1362 SGETVL------------RPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGAC 1429 (3245)
T ss_dssp TSCEEE------------EESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEE
T ss_pred CCCccc------------CCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEc
Confidence 0 0000 0001246899999999754432 2356666665321 00 1367889998
Q ss_pred cCCCh--HHHHHHHhhcccCceEEEecCCCHHHHHHHHHHHh
Q 014789 183 CRLDA--DQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHIL 222 (418)
Q Consensus 183 ~~~~~--~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l 222 (418)
|+..- ...+.+|+.+|| ..+.++.++.+++..|+...+
T Consensus 1430 nPp~~gGr~~l~~Rf~r~F--~vi~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1430 NPPTDAGRVQLTHRFLRHA--PILLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp CCTTSTTCCCCCHHHHTTC--CEEECCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHhhc--eEEEeCCCCHHHHHHHHHHHH
Confidence 87421 134678899999 468999999999999977654
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.26 E-value=9.7e-07 Score=75.89 Aligned_cols=60 Identities=12% Similarity=0.120 Sum_probs=38.3
Q ss_pred eEEEEEecchhhhhhcc---h---hHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecC
Q 014789 142 KTIIFVLDEFDLFAQGK---Q---RLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLP 208 (418)
Q Consensus 142 ~~~viilDEid~l~~~~---~---~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~ 208 (418)
+..||||||++.+.+.. . .++..+ . ......+.+|.++++ .+.++..+++|+. ..+++.+
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l-~--~~r~~~~~iil~tq~---~~~l~~~lr~ri~-~~~~l~~ 152 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWL-N--THRHQGIDIFVLTQG---PKLLDQNLRTLVR-KHYHIAS 152 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGG-G--GTTTTTCEEEEEESC---GGGBCHHHHTTEE-EEEEEEE
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHH-H--hcCcCCeEEEEECCC---HHHHhHHHHHHhh-eEEEEcC
Confidence 57899999999994321 1 233322 2 222345677778877 4566777888886 4567766
No 103
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.09 E-value=8.8e-06 Score=72.60 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcC-C-CceEEEECCCCCchHHHHHHHHHHH
Q 014789 38 SKLKFLVSSSVTEA-C-NNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 38 ~~l~~~l~~~~~~~-~-~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
..+..++...+++. + .++++|+||||||||+++.++++.+
T Consensus 87 ~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 87 QYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34555667776665 3 4679999999999999999998864
No 104
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.09 E-value=2.2e-05 Score=76.76 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=35.1
Q ss_pred hcCCCCccCCCCCChh-hhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 19 LCDPNFVVKHLSDSPD-SNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 19 ~~~~~~~~~~~l~gr~-~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
.+.+.|-| -.+-+.. +|.+.+... ...+..+. ++++|.|+||||||+++..++..+....
T Consensus 13 ~~~~~~~p-~~~~~Ln~~Q~~av~~~-~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~~ 73 (459)
T 3upu_A 13 GLVPRGSH-MTFDDLTEGQKNAFNIV-MKAIKEKK-HHVTINGPAGTGATTLTKFIIEALISTG 73 (459)
T ss_dssp ---------CCSSCCCHHHHHHHHHH-HHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCccccCC-CccccCCHHHHHHHHHH-HHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 34445554 3344444 344444443 33445443 3899999999999999999999887654
No 105
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.04 E-value=2.9e-06 Score=74.14 Aligned_cols=93 Identities=15% Similarity=0.180 Sum_probs=50.9
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 131 (418)
.+..++++|++|+||||++..++..+.... ..++.+...... . ....+++.++..... . ...+. ..++
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g---~kVli~~~~~d~--r-~~~~i~srlG~~~~~-~-~~~~~----~~i~ 78 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD---VKYLVFKPKIDT--R-SIRNIQSRTGTSLPS-V-EVESA----PEIL 78 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEEECCCG--G-GCSSCCCCCCCSSCC-E-EESST----HHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEEeccCc--h-HHHHHHHhcCCCccc-c-ccCCH----HHHH
Confidence 456778999999999999999998887654 333444322211 1 111233333211100 0 00111 2344
Q ss_pred HHHhhcCCCceEEEEEecchhhhhh
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
+.+.+....+.+-+|+|||++.+..
T Consensus 79 ~~i~~~~~~~~~dvViIDEaQ~l~~ 103 (223)
T 2b8t_A 79 NYIMSNSFNDETKVIGIDEVQFFDD 103 (223)
T ss_dssp HHHHSTTSCTTCCEEEECSGGGSCT
T ss_pred HHHHHHhhCCCCCEEEEecCccCcH
Confidence 4444322233578999999998755
No 106
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.00 E-value=1.5e-05 Score=73.00 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=21.5
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
+..++|+||||+|||+++..++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 456789999999999999999887
No 107
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.96 E-value=0.00035 Score=69.02 Aligned_cols=163 Identities=17% Similarity=0.208 Sum_probs=91.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhC-CCCeEEEEEcccc----------------CCChHH---HHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEY-PDTISVIKLNGLL----------------HSDDCC---AFKEIARQLCME 112 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~-~~~~~~v~in~~~----------------~~~~~~---~~~~i~~~l~~~ 112 (418)
.++++|.|.+|+|||++++.++..+.... +..+.++-++... .++... ++..+...+...
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg~eLs~~~~lPHl~~~Vvtd~~~a~~~L~~lv~EMerR 293 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEMERR 293 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSSHHHHTTTTCTTBSSSCBCCHHHHHHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCChhhhHhhcCCCcccceeeCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999888776543 4456777666542 112221 222333333211
Q ss_pred hhcc-cccCCChHhHHHHHHHHHhhc-------------------CCCceEEEEEecchhhhhhc-ch---hHHHHHHhh
Q 014789 113 HQLL-FSKMASFDDNSQFMIEMLREC-------------------GLAHKTIIFVLDEFDLFAQG-KQ---RLLYSLLDA 168 (418)
Q Consensus 113 ~~~~-~~~~~~~~~~~~~l~~~l~~~-------------------~~~~~~~viilDEid~l~~~-~~---~~L~~l~~~ 168 (418)
.... -.+..+...+-+.+.+..... ...-++++|||||++.+... .. ..+..+...
T Consensus 294 ~~ll~~~gvrni~~Yn~~~~~~~~~G~~~~dp~~~~~~~~~~~~~~~~lP~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~ 373 (574)
T 2iut_A 294 YRLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIVGKKVEELIARIAQK 373 (574)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTCCCCBCCCCCEEEEEESCCTTHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccHHHHHHHHHHHhhcccccccccccccccccccccccCCCcEEEEEeCHHHHhhhhhHHHHHHHHHHHHH
Confidence 1000 001112222222221111100 01224689999999977653 22 333444333
Q ss_pred hccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHHHH
Q 014789 169 MQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRLLE 219 (418)
Q Consensus 169 ~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~ 219 (418)
. -...+.+|.+|.+.+ .+.+...+++.+. .+|.|.--+..+...|+.
T Consensus 374 G--Ra~GIhLIlaTQRPs-~d~I~~~Iran~~-~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 374 A--RAAGIHLILATQRPS-VDVITGLIKANIP-TRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp C--TTTTEEEEEEESCCC-TTTSCHHHHHTCC-EEEEECCSCHHHHHHHHS
T ss_pred H--hhCCeEEEEEecCcc-cccccHHHHhhhc-cEEEEEcCCHHHHHHhcC
Confidence 2 236788999888865 2345667778886 457888888888877764
No 108
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.92 E-value=2.7e-05 Score=65.61 Aligned_cols=74 Identities=14% Similarity=0.202 Sum_probs=42.0
Q ss_pred eEEEEEecchhhhh---hcchhHHHHHHhhhccCCCcEEEEEecc-CCChHHHHHHHhhcccCceEEEecCCCHHHHHHH
Q 014789 142 KTIIFVLDEFDLFA---QGKQRLLYSLLDAMQSVTSQAVVIGVSC-RLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRL 217 (418)
Q Consensus 142 ~~~viilDEid~l~---~~~~~~L~~l~~~~~~~~~~~~lI~~s~-~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~i 217 (418)
.|-++++||++-.. ...+..+..+++. .+..+|.++. .++ .+ +-..+.+|-..+.+.+.+.+.+++.+-
T Consensus 99 ~p~llilDEigp~~~ld~~~~~~l~~~l~~-----~~~~~i~~~H~~h~-~~-~~~~i~~r~~~~i~~~~~~~r~~~~~~ 171 (178)
T 1ye8_A 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHD-----PNVNVVATIPIRDV-HP-LVKEIRRLPGAVLIELTPENRDVILED 171 (178)
T ss_dssp TTCEEEECCCSTTGGGCHHHHHHHHHHHTC-----TTSEEEEECCSSCC-SH-HHHHHHTCTTCEEEECCTTTTTTHHHH
T ss_pred CCCEEEEeCCCCcccCCHHHHHHHHHHHhc-----CCCeEEEEEccCCC-ch-HHHHHHhcCCcEEEEecCcCHHHHHHH
Confidence 46799999954332 2234455555443 2334555553 223 22 234566775446788888887777666
Q ss_pred HHHHh
Q 014789 218 LEHIL 222 (418)
Q Consensus 218 l~~~l 222 (418)
+..++
T Consensus 172 l~~~~ 176 (178)
T 1ye8_A 172 ILSLL 176 (178)
T ss_dssp HHHHS
T ss_pred HHHHH
Confidence 55544
No 109
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.90 E-value=2.3e-05 Score=66.47 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=22.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
+...+++||+|+||||++..++..+...
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~ 30 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG 30 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3467899999999999998777776543
No 110
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.85 E-value=0.00073 Score=78.83 Aligned_cols=143 Identities=15% Similarity=0.168 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhccc
Q 014789 38 SKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLF 117 (418)
Q Consensus 38 ~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~ 117 (418)
+...-.+..++...- +..+.||+|||||.+++.+++.+... ++.+||....+.. .+..++..+..
T Consensus 591 drcy~tl~~Al~~~~--gg~~~GPaGtGKTet~k~La~~lgr~------~~vfnC~~~~d~~-~~g~i~~G~~~------ 655 (3245)
T 3vkg_A 591 DRCYLTLTQALESRM--GGNPFGPAGTGKTETVKALGSQLGRF------VLVFCCDEGFDLQ-AMSRIFVGLCQ------ 655 (3245)
T ss_dssp HHHHHHHHHHHHTTC--EEEEECSTTSSHHHHHHHHHHHTTCC------EEEEECSSCCCHH-HHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHhCCe------EEEEeCCCCCCHH-HHHHHHhhHhh------
Confidence 333334444444433 34588999999999999999998743 4667998877643 33334333211
Q ss_pred ccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhc------------------cCCCcEEEE
Q 014789 118 SKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQ------------------SVTSQAVVI 179 (418)
Q Consensus 118 ~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~------------------~~~~~~~lI 179 (418)
...-.++|||+.+.....+++...+...+ .....+.++
T Consensus 656 ------------------------~GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vf 711 (3245)
T 3vkg_A 656 ------------------------CGAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIF 711 (3245)
T ss_dssp ------------------------HTCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEE
T ss_pred ------------------------cCcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEE
Confidence 13466899999887653333333222100 012356677
Q ss_pred EeccCCChH--HHHHHHhhcccCceEEEecCCCHHHHHHHHHHHh
Q 014789 180 GVSCRLDAD--QLLEKRVRSRFSHRKLLFLPPSKEDMQRLLEHIL 222 (418)
Q Consensus 180 ~~s~~~~~~--~~l~~~v~sr~~~~~i~~~~~~~~e~~~il~~~l 222 (418)
.+.|+ .+. ..|.+.++++| +.+.+..++.+.+.+|+-...
T Consensus 712 iTmNp-gY~gr~eLP~nLk~lF--r~v~m~~Pd~~~i~ei~L~s~ 753 (3245)
T 3vkg_A 712 VTMNP-GYAGRSNLPDNLKKLF--RSMAMIKPDREMIAQVMLYSQ 753 (3245)
T ss_dssp ECBCC-CGGGCCCSCHHHHTTE--EEEECCSCCHHHHHHHHHHTT
T ss_pred EEeCC-CccCcccChHHHHhhc--EEEEEeCCCHHHHHHHHHHHc
Confidence 77775 333 24567788999 679999999999999987653
No 111
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.84 E-value=9.4e-05 Score=69.22 Aligned_cols=92 Identities=15% Similarity=0.154 Sum_probs=59.3
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-hcccccCCChHhHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-QLLFSKMASFDDNSQFMI 131 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~l~ 131 (418)
+..++|+||||+|||+++..++..+.... -.++|+++....... .++.++... ........+.++....+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g---g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG---GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 56788999999999999999998876543 346778776554432 445554332 112223345555555555
Q ss_pred HHHhhcCCCceEEEEEecchhhhhh
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
..+... .+-++|||.+..+.+
T Consensus 133 ~l~~~~----~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 133 ELVRSG----VVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHHTS----CCSEEEEECTTTCCC
T ss_pred HHhhhc----CCCeEEehHhhhhcC
Confidence 444432 467899999887764
No 112
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.82 E-value=0.00019 Score=62.35 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=51.4
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHh-----hhcccccCCChHhH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCME-----HQLLFSKMASFDDN 126 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~-----~~~~~~~~~~~~~~ 126 (418)
.+..++|+||+|+|||+++..++. ... ..+++++.....+... +.++....+.. ....+....+..+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~---~~v~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSG---KKVAYVDTEGGFSPER-LVQMAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHC---SEEEEEESSCCCCHHH-HHHHHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcC---CcEEEEECCCCCCHHH-HHHHHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 356788999999999999999988 222 4567777655333322 33333322110 01111111222221
Q ss_pred HHHHHHHHhhcCCCceEEEEEecchhhhhh
Q 014789 127 SQFMIEMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 127 ~~~l~~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
.. +...+...... .+-+|||||+..+..
T Consensus 92 ~~-~~~~~~~l~~~-~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 92 RR-VIGSLKKTVDS-NFALVVVDSITAHYR 119 (220)
T ss_dssp HH-HHHHHHHHCCT-TEEEEEEECCCCCTT
T ss_pred HH-HHHHHHHHhhc-CCCEEEEcCcHHHhh
Confidence 11 22222222212 588999999987753
No 113
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.79 E-value=0.0001 Score=64.64 Aligned_cols=122 Identities=14% Similarity=0.067 Sum_probs=64.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhccc--------------
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLF-------------- 117 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~-------------- 117 (418)
.+..+.|+||+|+|||++++.++..+.... -.+++++... ....+.. ....++.......
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~---~~v~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDG---DPCIYVTTEE--SRDSIIR-QAKQFNWDFEEYIEKKLIIIDALMKEK 95 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHT---CCEEEEESSS--CHHHHHH-HHHHTTCCCGGGBTTTEEEEECCC---
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCC---CeEEEEEccc--CHHHHHH-HHHHhcchHHHHhhCCEEEEecccccc
Confidence 466788999999999999999997766543 2345555432 2222222 2222221110000
Q ss_pred -----ccCCChHhHHHHHHHHHhhcCCCceEE--EEEecchhhhhhc----chhHHHHHHhhhccCCCcEEEEEeccCC
Q 014789 118 -----SKMASFDDNSQFMIEMLRECGLAHKTI--IFVLDEFDLFAQG----KQRLLYSLLDAMQSVTSQAVVIGVSCRL 185 (418)
Q Consensus 118 -----~~~~~~~~~~~~l~~~l~~~~~~~~~~--viilDEid~l~~~----~~~~L~~l~~~~~~~~~~~~lI~~s~~~ 185 (418)
....+..+....+...+... .|- +|||||+..+... ...++..|.++... .++.+|.++...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~--~~~~vi~~~h~~ 168 (235)
T 2w0m_A 96 EDQWSLVNLTPEELVNKVIEAKQKL----GYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNK--WNFTIYATSQYA 168 (235)
T ss_dssp -CTTBCSSCCHHHHHHHHHHHHHHH----CSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHH--TTEEEEEEEC--
T ss_pred CceeeecCCCHHHHHHHHHHHHHhh----CCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHh--CCCeEEEEeccC
Confidence 01114444455555555443 344 9999999977522 12333333333222 356777777664
No 114
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.79 E-value=8.1e-05 Score=74.59 Aligned_cols=109 Identities=15% Similarity=0.162 Sum_probs=60.4
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIE 132 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 132 (418)
++.++|+|+||||||+++..++..+.... ..++.+ +.. ......+...++... .. ...+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g---~~Vl~~-ApT----~~Aa~~L~e~~~~~a-------~T----ih~ll~ 264 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLG---LEVGLC-APT----GKAARRLGEVTGRTA-------ST----VHRLLG 264 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTT---CCEEEE-ESS----HHHHHHHHHHHTSCE-------EE----HHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEe-cCc----HHHHHHhHhhhcccH-------HH----HHHHHc
Confidence 56899999999999999999998887654 223322 111 122333333332110 00 000000
Q ss_pred H----Hh-hcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccC
Q 014789 133 M----LR-ECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCR 184 (418)
Q Consensus 133 ~----l~-~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~ 184 (418)
. +. ........-+|||||+..+.. ..+..|+.... ...+++++|-.+-
T Consensus 265 ~~~~~~~~~~~~~~~~dvlIIDEasml~~---~~~~~Ll~~~~-~~~~lilvGD~~Q 317 (574)
T 3e1s_A 265 YGPQGFRHNHLEPAPYDLLIVDEVSMMGD---ALMLSLLAAVP-PGARVLLVGDTDQ 317 (574)
T ss_dssp EETTEESCSSSSCCSCSEEEECCGGGCCH---HHHHHHHTTSC-TTCEEEEEECTTS
T ss_pred CCcchhhhhhcccccCCEEEEcCccCCCH---HHHHHHHHhCc-CCCEEEEEecccc
Confidence 0 00 001112456999999998854 56666666543 3457888886654
No 115
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.75 E-value=0.00011 Score=68.96 Aligned_cols=92 Identities=18% Similarity=0.175 Sum_probs=55.4
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-hcccccCCChHhHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-QLLFSKMASFDDNSQFM 130 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~l 130 (418)
.+..++|+||||+|||+++..++..+.... ..+++++....... . .++.++... ...+....+.++..+.+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g---~~vlyi~~E~~~~~--~---~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG---GIAAFIDAEHALDP--E---YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCH--H---HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC---CeEEEEECCCCcCH--H---HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 366789999999999999999988776543 34567776543332 1 233443221 11112223344444433
Q ss_pred HHHHhhcCCCceEEEEEecchhhhh
Q 014789 131 IEMLRECGLAHKTIIFVLDEFDLFA 155 (418)
Q Consensus 131 ~~~l~~~~~~~~~~viilDEid~l~ 155 (418)
...... ..+-+||||++..+.
T Consensus 132 ~~l~~~----~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 132 DMLVRS----GALDIIVIDSVAALV 152 (349)
T ss_dssp HHHHTT----TCCSEEEEECGGGCC
T ss_pred HHHHhc----CCCCEEEEcChHhhc
Confidence 333322 357899999999886
No 116
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.71 E-value=0.0013 Score=64.29 Aligned_cols=75 Identities=16% Similarity=0.278 Sum_probs=48.1
Q ss_pred eEEEEEecchhhhhhc----chhHHHHHHhhhccCCCcEEEEEeccCCChHHHHHHHhhcccCceEEEecCCCHHHHHHH
Q 014789 142 KTIIFVLDEFDLFAQG----KQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLLEKRVRSRFSHRKLLFLPPSKEDMQRL 217 (418)
Q Consensus 142 ~~~viilDEid~l~~~----~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l~~~v~sr~~~~~i~~~~~~~~e~~~i 217 (418)
++++++|||+..+... ..+.+..|.+... ...+.+|.+|.+.+ .+.+...+++.+. .+|.|.--+..+...|
T Consensus 297 P~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gR--a~GI~LIlaTQrp~-~dvl~~~i~~n~~-~RI~lrv~s~~dsr~i 372 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTVGKKVEELIARLAQKAR--AAGIHLVLATQRPS-VDVITGLIKANIP-TRIAFTVSSKIDSRTI 372 (512)
T ss_dssp CEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCG--GGTEEEEEEESCCC-TTTSCHHHHHHCC-EEEEECCSSHHHHHHH
T ss_pred CcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhh--hCCcEEEEEecCCc-cccccHHHHhhcC-CeEEEEcCCHHHHHHh
Confidence 3479999999777643 1233333333322 24788888888865 2344556677775 4578888888888877
Q ss_pred HHH
Q 014789 218 LEH 220 (418)
Q Consensus 218 l~~ 220 (418)
+..
T Consensus 373 lg~ 375 (512)
T 2ius_A 373 LDQ 375 (512)
T ss_dssp HSS
T ss_pred cCC
Confidence 653
No 117
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.69 E-value=0.00013 Score=81.68 Aligned_cols=93 Identities=17% Similarity=0.213 Sum_probs=58.9
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-hcccccCCChHhHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-QLLFSKMASFDDNSQFM 130 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~l 130 (418)
++.+++|+||||||||+++.+++....... ..+++++......+. + ++.++.+. ...+....+.++..+.+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G---~~v~Fi~~e~~~~~l--~---a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEHALDPI--Y---ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEECTTSCCCHH--H---HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CcEEEEEcccccCHH--H---HHHcCCCchhceeecCChHHHHHHHH
Confidence 477999999999999999999998877554 456777765554431 2 44443211 11122223344444444
Q ss_pred HHHHhhcCCCceEEEEEecchhhhhh
Q 014789 131 IEMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 131 ~~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
....++. .+.+|||||++.+.+
T Consensus 1498 ~~lvr~~----~~~lVVIDsi~al~p 1519 (2050)
T 3cmu_A 1498 DALARSG----AVDVIVVDSVAALTP 1519 (2050)
T ss_dssp HHHHHHT----CCSEEEESCGGGCCC
T ss_pred HHHHhcC----CCCEEEEcChhHhcc
Confidence 4444443 588999999986664
No 118
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.68 E-value=0.00038 Score=61.39 Aligned_cols=100 Identities=9% Similarity=0.080 Sum_probs=56.4
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhh-h--CCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-----hcccccCCCh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLL-E--YPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-----QLLFSKMASF 123 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~-~--~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~ 123 (418)
.+..+.|+||+|+|||+++..++..... . .+..-.++++++....... -+.+++..++... ...+....+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPE-RLLAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHH-HHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHH-HHHHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 4668889999999999999999875321 1 0012467888876533332 2334444443211 1111122233
Q ss_pred HhH---HHHHHHHHhhcCCCceEEEEEecchhhhhh
Q 014789 124 DDN---SQFMIEMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 124 ~~~---~~~l~~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
.+. ...+.+.+.. ..+-+|||||+..+..
T Consensus 102 ~~~~~~~~~~~~~~~~----~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVE----SRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHHHHH----SCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHHHHHhc----CCceEEEEeCchHHHH
Confidence 332 2234444433 2588999999987754
No 119
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.67 E-value=0.00016 Score=64.29 Aligned_cols=123 Identities=11% Similarity=0.101 Sum_probs=63.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh-hhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh-------ccc------
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL-LEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-------LLF------ 117 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~-~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-------~~~------ 117 (418)
++..+.|.||+|+||||+++.++.... ... -..++++..... . .+......++.... ..+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~---~~~~~~~~~~~~--~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 102 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYG---EPGVFVTLEERA--R-DLRREMASFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSCH--H-HHHHHHHTTTCCHHHHHHTTSEEEEC----
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC---CeEEEEEccCCH--H-HHHHHHHHcCCChHHHhhcCCEEEEEcccc
Confidence 467888999999999999999885333 222 223445443221 1 12222222211000 000
Q ss_pred ------------ccCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhh-----c-chhHHHHHHhhhccCCCcEEEE
Q 014789 118 ------------SKMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQ-----G-KQRLLYSLLDAMQSVTSQAVVI 179 (418)
Q Consensus 118 ------------~~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~-----~-~~~~L~~l~~~~~~~~~~~~lI 179 (418)
.......+..+.+...+... .|-+++|||.-.+.. . ....+..++..... ....+|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~--~g~tii 176 (251)
T 2ehv_A 103 VVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAI----NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE--MGVTTI 176 (251)
T ss_dssp ---------------CCHHHHHHHHHHHHHHT----TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH--HCCEEE
T ss_pred ccccccccceeccCcccHHHHHHHHHHHHHhh----CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH--CCCeEE
Confidence 00012233344444444432 577899999987764 2 33446666655432 345677
Q ss_pred EeccCCC
Q 014789 180 GVSCRLD 186 (418)
Q Consensus 180 ~~s~~~~ 186 (418)
.++...+
T Consensus 177 ~vtH~~~ 183 (251)
T 2ehv_A 177 LTTEAPD 183 (251)
T ss_dssp EEECCC-
T ss_pred EEECCCC
Confidence 7776643
No 120
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.64 E-value=0.00023 Score=66.05 Aligned_cols=101 Identities=12% Similarity=0.107 Sum_probs=58.8
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhh---CCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-----hcccccCCCh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLE---YPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-----QLLFSKMASF 123 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~---~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~ 123 (418)
.+..++|+||||+|||+++..++...... .+....++|++.....++.. +.+++..++... ...+....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~-l~~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWER-IENMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHH-HHHHHHHhCCCHHHHhccEEEEeCCCH
Confidence 36678899999999999999998765322 11124678888765433333 334444443221 1111222233
Q ss_pred Hh---HHHHHHHHHhhcCCCceEEEEEecchhhhhh
Q 014789 124 DD---NSQFMIEMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 124 ~~---~~~~l~~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
++ ....+...+.+. ..+-+||||.+..+..
T Consensus 185 ~~~~~~l~~l~~~~~~~---~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKD---PSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHHC---TTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhc---cCCCEEEEeCcHHHhh
Confidence 32 233444444441 2588999999998754
No 121
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.62 E-value=0.00041 Score=63.24 Aligned_cols=94 Identities=14% Similarity=0.258 Sum_probs=58.7
Q ss_pred eEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-hcccccCCChHhH-HHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-QLLFSKMASFDDN-SQFMIE 132 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~-~~~l~~ 132 (418)
.++|+||||+|||+++..++.......+ .-.++|+++.....+. -+++++... ........+.++. ++ +.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~-g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~-i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYP-DAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRID-MVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCT-TCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHH-HHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCC-CceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHH-HHH
Confidence 6789999999999999998887765421 1467888876655432 255665432 1222233344443 33 233
Q ss_pred HHhhcCCCceEEEEEecchhhhhh
Q 014789 133 MLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 133 ~l~~~~~~~~~~viilDEid~l~~ 156 (418)
.+... ....+.+||||-+..+.+
T Consensus 103 ~l~~i-~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 103 QLDAI-ERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHHTC-CTTCCEEEEEECSTTCBC
T ss_pred HHHHh-hccCceEEEEeccccccc
Confidence 33222 234789999999998863
No 122
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.62 E-value=0.00033 Score=59.37 Aligned_cols=134 Identities=13% Similarity=0.086 Sum_probs=66.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEE-ccccCCChHHHHHHHHHHHHHhh---hccccc-CCChH--
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKL-NGLLHSDDCCAFKEIARQLCMEH---QLLFSK-MASFD-- 124 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~i-n~~~~~~~~~~~~~i~~~l~~~~---~~~~~~-~~~~~-- 124 (418)
..+.+++++++|.||||++-.++-...... .++.++.+ .+.....+..++.. +.... +..+.- .....
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G-~rV~~vQF~Kg~~~~gE~~~l~~----L~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHG-KNVGVVQFIKGTWPNGERNLLEP----HGVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTT-CCEEEEESSCCSSCCHHHHHHGG----GTCEEEECCTTCCCCGGGHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEEeeCCCCCccHHHHHHh----CCcEEEEcccccccCCCCcHHH
Confidence 356899999999999999988887766554 22333322 23222233333333 31100 000000 00000
Q ss_pred -hHHHHHHHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCChHHHH
Q 014789 125 -DNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDADQLL 191 (418)
Q Consensus 125 -~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~~~~l 191 (418)
.....-++...+.-..+.+-+|||||+-....-+.--...++++.........+|.|++..+ .+.+
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap-~~l~ 168 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH-RDIL 168 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC-HHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc-HHHH
Confidence 11111222222222234678999999977544321112223334334446778899998864 4443
No 123
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.60 E-value=0.00026 Score=62.63 Aligned_cols=121 Identities=16% Similarity=0.127 Sum_probs=65.8
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-------hcccc------
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-------QLLFS------ 118 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-------~~~~~------ 118 (418)
.+..++|+||||+|||+++..++..+.... -.+++++.... ...+... +..++... .....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~---~~v~~~~~e~~--~~~~~~~-~~~~g~~~~~~~~~~~l~~~~~~~~~ 95 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMG---EPGIYVALEEH--PVQVRQN-MAQFGWDVKPYEEKGMFAMVDAFTAG 95 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTT---CCEEEEESSSC--HHHHHHH-HHTTTCCCHHHHHHTSEEEEECSTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEEEccCC--HHHHHHH-HHHcCCCHHHHhhCCcEEEEecchhh
Confidence 366789999999999999988877665433 34566665432 2222222 22222110 00000
Q ss_pred -------------cCCChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc----chhHHHHHHhhhccCCCcEEEEEe
Q 014789 119 -------------KMASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG----KQRLLYSLLDAMQSVTSQAVVIGV 181 (418)
Q Consensus 119 -------------~~~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~----~~~~L~~l~~~~~~~~~~~~lI~~ 181 (418)
...+..+..+.+.+.+... .+-+++||++..+... ....+..+.+.... .++.+|.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~--~~~~vi~~ 169 (247)
T 2dr3_A 96 IGKSKEYEKYIVHDLTDIREFIEVLRQAIRDI----NAKRVVVDSVTTLYINKPAMARSIILQLKRVLAG--TGCTSIFV 169 (247)
T ss_dssp TCC--CCCSCBCSCCSSHHHHHHHHHHHHHHH----TCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHH--TTCEEEEE
T ss_pred cccccccccccccCccCHHHHHHHHHHHHHHh----CCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHH--CCCeEEEE
Confidence 0122334445555555443 3568999999988632 23455555555433 23455555
Q ss_pred ccC
Q 014789 182 SCR 184 (418)
Q Consensus 182 s~~ 184 (418)
++.
T Consensus 170 ~h~ 172 (247)
T 2dr3_A 170 SQV 172 (247)
T ss_dssp EEC
T ss_pred ecC
Confidence 544
No 124
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.59 E-value=0.00034 Score=65.81 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=56.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-hcccccCCChHhHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-QLLFSKMASFDDNSQFM 130 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~l 130 (418)
.+..++|+|+||+|||+++..++....... ..+++++....... . .+..++... ...+....+.++..+.+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g---~~vlyi~~E~s~~~--~---~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAG---GTCAFIDAEHALDP--V---YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCH--H---HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCC---CeEEEEECCCChhH--H---HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 366788999999999999999988776543 34677776544332 1 233333221 11122233445544444
Q ss_pred HHHHhhcCCCceEEEEEecchhhhhh
Q 014789 131 IEMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 131 ~~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
...++. ..+-+||||.+..+..
T Consensus 145 ~~l~~~----~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 145 ELLVRS----GAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHHHTT----TCCSEEEEECTTTCCC
T ss_pred HHHHhc----CCCCEEEEeChHHhcc
Confidence 443332 3577999999998863
No 125
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.56 E-value=0.00034 Score=65.59 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=55.3
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-hcccccCCChHhHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-QLLFSKMASFDDNSQFM 130 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~l 130 (418)
.+..++|+|+||+|||+++..++..+.... ..+++++.....++. .+..++... ........+.++..+.+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g---~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHH
Confidence 466789999999999999999998776543 346777765443331 133333221 11111222333433333
Q ss_pred HHHHhhcCCCceEEEEEecchhhhhh
Q 014789 131 IEMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 131 ~~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
....+. ..+-+||||.+..+..
T Consensus 134 ~~l~~~----~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 134 DALARS----GAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHH----TCCSEEEEECGGGCCC
T ss_pred HHHHhc----cCCCEEEEcCHHHhcc
Confidence 333332 2467999999998864
No 126
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.51 E-value=0.0036 Score=60.05 Aligned_cols=49 Identities=18% Similarity=0.009 Sum_probs=36.5
Q ss_pred hhhhHHHHHHHHHHHHhcC---------CCceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 33 PDSNYSKLKFLVSSSVTEA---------CNNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~---------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
++..++.+.+.|...+... .+..+++.|++|+||||++..++..+....
T Consensus 68 ~~~v~~~v~~eL~~~L~~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G 125 (433)
T 3kl4_A 68 KEWFISIVYDELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRG 125 (433)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 5555666666666655432 255788999999999999999999887654
No 127
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.45 E-value=0.00058 Score=69.02 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=24.1
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
++.++|+|+||||||+++..++..+..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999888764
No 128
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.42 E-value=0.00071 Score=63.26 Aligned_cols=101 Identities=12% Similarity=0.124 Sum_probs=57.1
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhC---CCCeEEEEEccccCCChHHHHHHHHHHHHHhh-----hcccccCCChH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEY---PDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-----QLLFSKMASFD 124 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~---~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~ 124 (418)
+..++|+||||+|||+++..++....... +..-.++|++.....++.. +.+++..++... ...+....+.+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~-l~~~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDR-LRDIADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHH-HHHHHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHH-HHHHHHHcCCCHHHHHhceeEeecCCHH
Confidence 55678999999999999999987643210 1125678888765433333 334444443221 11111222222
Q ss_pred h---HHHHHHHHHhhcCCCceEEEEEecchhhhhh
Q 014789 125 D---NSQFMIEMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 125 ~---~~~~l~~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
+ ....+...+.+. ...+-+||||.+..+..
T Consensus 201 ~~~~ll~~l~~~i~~~--~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEE--AGIFKLLIIDSIMALFR 233 (343)
T ss_dssp HHHHHHHHHHHHHHHS--CSSEEEEEEETSGGGHH
T ss_pred HHHHHHHHHHHHHHhc--CCCccEEEEechHHHHH
Confidence 2 233334444441 03688999999988764
No 129
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.42 E-value=0.00079 Score=64.11 Aligned_cols=100 Identities=11% Similarity=0.130 Sum_probs=56.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhh--C-CCCeEEEEEccccCCChHHHHHHHHHHHHHhh-----hcccccCCCh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLE--Y-PDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-----QLLFSKMASF 123 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~--~-~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~ 123 (418)
.+..+.|+||+|+|||+++..++-..... . +..-.++|+++....... -+..+++.++... .+.+......
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~-rl~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPV-RLVSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHH-HHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHH-HHHHHHHHcCCChHhHhhcEEEeccCCh
Confidence 36678899999999999999776443221 1 123567888876543332 3444555554221 1112222222
Q ss_pred Hh---HHHHHHHHHhhcCCCceEEEEEecchhhhhh
Q 014789 124 DD---NSQFMIEMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 124 ~~---~~~~l~~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
.. ....+...+... .+-+|+||++..+..
T Consensus 256 ~~~~~~l~~~~~~l~~~----~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSES----RFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHHHHHHHHHHHHS----CEEEEEEETGGGGCC
T ss_pred HHHHHHHHHHHHHHHhc----CCceEEecchhhhCc
Confidence 22 222333334332 588999999887654
No 130
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.41 E-value=0.00076 Score=58.89 Aligned_cols=131 Identities=14% Similarity=0.082 Sum_probs=67.4
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhC---CCCeEEEEEccccCCChHHHHHHHHHHHHHhh-----hcccccCCCh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEY---PDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-----QLLFSKMASF 123 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~---~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~ 123 (418)
.+..+.|.||+|+||||+++.++..+.... ...-..+++++...... .-+..+.+..+... ...+......
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP-ERIREIAQNRGLDPDEVLKHIYVARAFNS 102 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH-HHHHHHHHHTTSCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH-HHHHHHHHHcCCCHHHHhhcEEEEecCCh
Confidence 356788999999999999999987543211 11245677877553322 22334444332111 1111111121
Q ss_pred Hh---HHHHHHHHHhhcC-CCceEEEEEecchhhhhhc--------ch------hHHHHHHhhhccCCCcEEEEEeccCC
Q 014789 124 DD---NSQFMIEMLRECG-LAHKTIIFVLDEFDLFAQG--------KQ------RLLYSLLDAMQSVTSQAVVIGVSCRL 185 (418)
Q Consensus 124 ~~---~~~~l~~~l~~~~-~~~~~~viilDEid~l~~~--------~~------~~L~~l~~~~~~~~~~~~lI~~s~~~ 185 (418)
.. ..+.+.+.+.... ....|-+++|||...+... .+ .++..+.+.... .++.+|.++...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~--~g~tvi~vtH~~ 180 (231)
T 4a74_A 103 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANL--YDIAVFVTNQVQ 180 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHH--HTCEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHH--CCCeEEEEeecc
Confidence 11 1233334443111 1347899999998765332 11 334444443322 356777777644
No 131
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.40 E-value=0.0013 Score=60.89 Aligned_cols=101 Identities=11% Similarity=0.096 Sum_probs=58.0
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhh-----------hCC-C-CeEEEEEccccCCChHHHHHHHHHHHHHhh-----
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLL-----------EYP-D-TISVIKLNGLLHSDDCCAFKEIARQLCMEH----- 113 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~-----------~~~-~-~~~~v~in~~~~~~~~~~~~~i~~~l~~~~----- 113 (418)
.+..++|+|+||+|||+++..++..... ..+ . ...++|++.....++.. +.+.+..++...
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~-l~~~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPER-IMQMAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHH-HHHHHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhc
Confidence 3567889999999999999999876321 111 1 15678888755433333 334455554321
Q ss_pred hcccccCCChHh---HHHHHHHHHhhcCCCceEEEEEecchhhhhh
Q 014789 114 QLLFSKMASFDD---NSQFMIEMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 114 ~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
...+....+.++ ..+.+...+.+. ..+-+||||.+..+..
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~---~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEG---NNIKLVVIDSLTSTFR 218 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTT---CEEEEEEEECSSHHHH
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhc---cCccEEEEECcHHHHH
Confidence 111222223332 233344444431 3688999999988754
No 132
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.36 E-value=0.00082 Score=58.25 Aligned_cols=42 Identities=17% Similarity=0.073 Sum_probs=30.2
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCC
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSD 97 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~ 97 (418)
..++++.|++|+|||+++-.++..+.... ..++.++...+..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G---~~V~v~d~D~q~~ 47 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQG---VRVMAGVVETHGR 47 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCCTTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCC---CCEEEEEeCCCCC
Confidence 45799999999999999999998887654 3334444434443
No 133
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.34 E-value=0.0052 Score=58.97 Aligned_cols=61 Identities=11% Similarity=0.029 Sum_probs=42.2
Q ss_pred hhhhHHHHHHHHHHHHhc--------CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCC
Q 014789 33 PDSNYSKLKFLVSSSVTE--------ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHS 96 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~--------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~ 96 (418)
.+..++.+.+.|...+.. .++..+++.|++|+||||++..++..+.... ..+.-+.|....
T Consensus 72 ~~~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G---~kVllv~~D~~R 140 (443)
T 3dm5_A 72 KEHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRG---YKVGVVCSDTWR 140 (443)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEECCCSS
T ss_pred HHHHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCC---CeEEEEeCCCcc
Confidence 445556666666665543 2256788999999999999999999887654 344555655444
No 134
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.33 E-value=0.002 Score=57.65 Aligned_cols=28 Identities=25% Similarity=0.178 Sum_probs=24.3
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
+..++|+|+||+||||+++.+++.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~ 31 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKN 31 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhC
Confidence 4578999999999999999999987643
No 135
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.27 E-value=0.00041 Score=58.63 Aligned_cols=108 Identities=11% Similarity=0.076 Sum_probs=52.6
Q ss_pred CCceEEEECCCCCchH-HHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHH
Q 014789 52 CNNSILLLGPRGSGKI-AVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFM 130 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT-~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 130 (418)
.+.-.+++||.|+||| .+++.+.+.... . ..++++.....+.. . ..+.+.++....- .......+..+
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~-~---~kvl~~kp~~D~R~-~--~~i~S~~g~~~~A--~~~~~~~d~~~-- 87 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA-Q---YKCLVIKYAKDTRY-S--SSFCTHDRNTMEA--LPACLLRDVAQ-- 87 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT-T---CCEEEEEETTCCCG-G--GSCCHHHHHHSEE--EEESSGGGGHH--
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc-C---CeEEEEccccCccc-h--hhhhhccCCcccc--eecCCHHHHHH--
Confidence 3566789999999999 566655544333 2 34455553322111 1 2244444432210 01112222222
Q ss_pred HHHHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEecc
Q 014789 131 IEMLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSC 183 (418)
Q Consensus 131 ~~~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~ 183 (418)
... ..-+|+|||++.| +...+.+..+. ..+.++++-|.-+
T Consensus 88 --~~~------~~DvIlIDEaQFf-k~~ve~~~~L~----~~gk~VI~~GL~~ 127 (195)
T 1w4r_A 88 --EAL------GVAVIGIDEGQFF-PDIVEFCEAMA----NAGKTVIVAALDG 127 (195)
T ss_dssp --HHH------TCSEEEESSGGGC-TTHHHHHHHHH----HTTCEEEEEEESB
T ss_pred --hcc------CCCEEEEEchhhh-HHHHHHHHHHH----HCCCeEEEEeccc
Confidence 222 2349999999999 43223333332 2234555555443
No 136
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.26 E-value=0.00053 Score=58.21 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.6
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHh
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
..+.|.||+|+||||+++.++..+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3578999999999999999999886
No 137
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.23 E-value=0.0032 Score=56.06 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=23.1
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..++|.|+||+||||+++.+++.+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 55788999999999999999988765
No 138
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.20 E-value=0.0036 Score=54.95 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=19.4
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
+..+++.||+|||||+++...+-.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhc
Confidence 468999999999999877765533
No 139
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.18 E-value=0.0014 Score=56.35 Aligned_cols=89 Identities=10% Similarity=0.126 Sum_probs=41.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIE 132 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 132 (418)
+.-.+++|+.|+|||+.+-..+....... ..++.+..... + +.--..+.+.++....... ..... +
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g---~kVli~k~~~d-~-R~ge~~i~s~~g~~~~a~~--~~~~~-------~ 93 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAK---QHAIVFKPCID-N-RYSEEDVVSHNGLKVKAVP--VSASK-------D 93 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEECC-------------------CCEEE--CSSGG-------G
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCC---CEEEEEEeccC-C-cchHHHHHhhcCCeeEEee--cCCHH-------H
Confidence 44556899999999999988888776554 23333332221 1 1112345555543321000 01111 1
Q ss_pred HHhhcCCCceEEEEEecchhhhhhc
Q 014789 133 MLRECGLAHKTIIFVLDEFDLFAQG 157 (418)
Q Consensus 133 ~l~~~~~~~~~~viilDEid~l~~~ 157 (418)
.+.... +..-+|+|||++.|...
T Consensus 94 ~~~~~~--~~~dvViIDEaQF~~~~ 116 (214)
T 2j9r_A 94 IFKHIT--EEMDVIAIDEVQFFDGD 116 (214)
T ss_dssp GGGGCC--SSCCEEEECCGGGSCTT
T ss_pred HHHHHh--cCCCEEEEECcccCCHH
Confidence 121111 23569999999998653
No 140
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.18 E-value=0.0011 Score=74.29 Aligned_cols=93 Identities=17% Similarity=0.227 Sum_probs=58.1
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh-cccccCCChHhHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-LLFSKMASFDDNSQFM 130 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~~l 130 (418)
.+.+++++||||||||+++.+++.+..... ..+++++.....+. ++ +.+++.... .....+ ...+....+
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~G---e~~~Fit~ee~~~~--L~---a~~~G~dl~~l~~~~p-d~~e~~~~i 1150 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEHALDP--IY---ARKLGVDIDNLLCSQP-DTGEQALEI 1150 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEECTTSCCCH--HH---HHHTTCCTTTCEEECC-SSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEEccccHHH--HH---HHHcCCChhHheeecC-cchHHHHHH
Confidence 477899999999999999999998877654 45677776665544 22 233332110 000011 122333445
Q ss_pred HHHHhhcCCCceEEEEEecchhhhhh
Q 014789 131 IEMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 131 ~~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
.+.+.+. ..+-+||||++..+..
T Consensus 1151 ~~~l~~~---~~~dlvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1151 CDALARS---GAVDVIVVDSVAALTP 1173 (2050)
T ss_dssp HHHHHHH---TCCSEEEESCGGGCCC
T ss_pred HHHHHHh---CCCCEEEECCcccccc
Confidence 5555443 2688999999998854
No 141
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.18 E-value=0.0025 Score=54.51 Aligned_cols=32 Identities=16% Similarity=0.210 Sum_probs=21.9
Q ss_pred hhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHH
Q 014789 33 PDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLE 71 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~ 71 (418)
++-|.+.+...+ .+.++++.+|+|+|||.+.-
T Consensus 27 ~~~Q~~~i~~~~-------~~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 27 SPIQEESIPIAL-------SGRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CHHHHHHHHHHH-------TTCCEEEECCSSSTTHHHHH
T ss_pred CHHHHHHHHHHc-------cCCCEEEECCCCCchHHHHH
Confidence 455555554433 23679999999999997654
No 142
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.17 E-value=0.003 Score=58.22 Aligned_cols=39 Identities=15% Similarity=-0.077 Sum_probs=29.9
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccc
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGL 93 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~ 93 (418)
++..++|.|+||+|||+++..++....... ..+++++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g---~~vl~~slE 105 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLE 105 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT---CEEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEECC
Confidence 466789999999999999999987765433 456677654
No 143
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.13 E-value=0.002 Score=62.75 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=29.3
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcc
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNG 92 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~ 92 (418)
++..++|.|+||+|||+++..++..+....+ ..+++++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g--~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTN--ENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSS--CCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCC--CcEEEEEC
Confidence 3567889999999999999999988765432 23455553
No 144
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.11 E-value=0.011 Score=52.10 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=23.6
Q ss_pred CceEEEECCCCCchHHHH-HHHHHHHhhhCCCCeEEEEEc
Q 014789 53 NNSILLLGPRGSGKIAVL-ELILTDLLLEYPDTISVIKLN 91 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~-~~~~~~l~~~~~~~~~~v~in 91 (418)
+.++++.+|+|+|||.+. -.++..+.........++++.
T Consensus 66 ~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~ 105 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIIS 105 (245)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEEC
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEe
Confidence 457999999999999864 334444443221223455553
No 145
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.10 E-value=0.00034 Score=63.73 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=22.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..++|+||||+||||+++.+++.+.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 55688999999999999999988764
No 146
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.07 E-value=0.00045 Score=58.70 Aligned_cols=29 Identities=21% Similarity=0.148 Sum_probs=24.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
+.-.+++||.|+|||+.+-..+..+....
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g 36 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAK 36 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 45677999999999999998888876543
No 147
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.06 E-value=0.0034 Score=58.76 Aligned_cols=29 Identities=34% Similarity=0.448 Sum_probs=25.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
++..++|+||+|+||||+++.++..+...
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 45589999999999999999999988765
No 148
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.05 E-value=0.003 Score=59.07 Aligned_cols=104 Identities=14% Similarity=0.098 Sum_probs=55.0
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhh--C-CCCeEEEEEccccCCChHHHHHHHHHHHHHhh-----hcccccCCCh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLE--Y-PDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-----QLLFSKMASF 123 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~--~-~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~ 123 (418)
.+..+.|+||+|+|||++++.++...... . +..-.++++++.....+ .-+..++...+... .+.+......
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~-~~i~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP-ERIREIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCH-HHHHHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCH-HHHHHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 36678899999999999999998876311 1 00135678887554222 22334444332111 1111111111
Q ss_pred H---hHHHHHHHHHhhcC-CCceEEEEEecchhhhhh
Q 014789 124 D---DNSQFMIEMLRECG-LAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 124 ~---~~~~~l~~~l~~~~-~~~~~~viilDEid~l~~ 156 (418)
. +.+..+...+.+.. ....|-+|||||+-.+..
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld 245 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 245 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhh
Confidence 1 22233333333310 013689999999876653
No 149
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.02 E-value=0.0056 Score=53.87 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=29.0
Q ss_pred CChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHH
Q 014789 31 DSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 31 ~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
.-++.|.+.+..++ . ...++++||+|+|||.++..++..+
T Consensus 93 ~l~~~Q~~ai~~~~----~---~~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 93 SLRDYQEKALERWL----V---DKRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCHHHHHHHHHHT----T---TSEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHH----h---CCCEEEEeCCCCCHHHHHHHHHHHc
Confidence 33666666665543 2 2359999999999999998887765
No 150
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.02 E-value=0.0035 Score=60.37 Aligned_cols=102 Identities=16% Similarity=0.174 Sum_probs=57.0
Q ss_pred hcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh----hccc-ccC-CC
Q 014789 49 TEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH----QLLF-SKM-AS 122 (418)
Q Consensus 49 ~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~----~~~~-~~~-~~ 122 (418)
.-..+..+.|+|++|+|||++++.++......... ++ +++.+-.+++. ..++...+.... ...+ ... .+
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~-i~-V~~~iGertte---v~el~~~l~~~~~l~~tvvv~~~~~d~ 221 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGG-IS-VFAGVGERTRE---GNDLYHEMKDSGVISKTAMVFGQMNEP 221 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCC-CE-EEEEESSCHHH---HHHHHHHHHHTSGGGGEEEEEECTTSC
T ss_pred hhccCCEEEEECCCCCCccHHHHHHHhhhhhccCc-EE-EEeeeccCchH---HHHHHHHhhhcCCcceeEEEEEcCCCC
Confidence 33456789999999999999999999887765432 33 44544444432 344444442211 0000 000 01
Q ss_pred hH--h----HHHHHHHHHhhcCCCceEEEEEecchhhhhhc
Q 014789 123 FD--D----NSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG 157 (418)
Q Consensus 123 ~~--~----~~~~l~~~l~~~~~~~~~~viilDEid~l~~~ 157 (418)
+. . .--.+.+.+... .++.+++++|++..+...
T Consensus 222 pg~r~~~~~~~ltiAEyFrd~--~G~~VLl~~D~itR~a~A 260 (473)
T 1sky_E 222 PGARMRVALTGLTMAEYFRDE--QGQDGLLFIDNIFRFTQA 260 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--SCCEEEEEEECTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh--cCCcEEEEeccHHHHHHH
Confidence 11 0 011234445441 247899999999988764
No 151
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.01 E-value=0.0086 Score=55.47 Aligned_cols=50 Identities=8% Similarity=-0.021 Sum_probs=34.4
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIA 106 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~ 106 (418)
++..++|.|+||+|||+++..++..+.... ..+.+++... +...+...+.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g---~~Vl~fSlEm--s~~ql~~Rll 94 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDD---RGVAVFSLEM--SAEQLALRAL 94 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT---CEEEEEESSS--CHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---CeEEEEeCCC--CHHHHHHHHH
Confidence 466788999999999999999998776532 4556665432 2334444443
No 152
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.01 E-value=0.0022 Score=71.06 Aligned_cols=92 Identities=17% Similarity=0.217 Sum_probs=58.4
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhh-hcccccCCChHhHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEH-QLLFSKMASFDDNSQFM 130 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~~~~~l 130 (418)
++..++|+||||+|||+++..++..+.... ..+++++....... ++ ++.++... ...+....+.++..+.+
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g---~~VlyiS~Ees~~q--l~---A~~lGvd~~~L~i~~~~~leei~~~l 802 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEHALDP--IY---ARKLGVDIDNLLCSQPDTGEQALEIC 802 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEECTTSCCCH--HH---HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcC---CCeEEEeccchHHH--HH---HHHcCCChhheEEecCCcHHHHHHHH
Confidence 366899999999999999999998877543 35678877655543 21 44443211 11122223444555444
Q ss_pred HHHHhhcCCCceEEEEEecchhhhh
Q 014789 131 IEMLRECGLAHKTIIFVLDEFDLFA 155 (418)
Q Consensus 131 ~~~l~~~~~~~~~~viilDEid~l~ 155 (418)
.....+. .+-+||||.++.+.
T Consensus 803 ~~lv~~~----~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 803 DALARSG----AVDVIVVDSVAALT 823 (1706)
T ss_dssp HHHHHHT----CCSEEEESCSTTCC
T ss_pred HHHHHcc----CCCEEEEechhhhc
Confidence 4444332 57799999999887
No 153
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.01 E-value=0.0003 Score=63.46 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
++..+.|.||.|+||||+++.++..+.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 466788999999999999998876543
No 154
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.00 E-value=0.0023 Score=53.28 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.6
Q ss_pred CCceEEEECCCCCchHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLEL 72 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~ 72 (418)
.+..+.|.||+|+||||+++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 456788999999999999995
No 155
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.00 E-value=0.0064 Score=58.92 Aligned_cols=39 Identities=15% Similarity=0.021 Sum_probs=29.3
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcc
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNG 92 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~ 92 (418)
++..++|.|+||+|||+++..++.......+ ..+++++.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--~~vl~~sl 237 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEG--VGVGIYSL 237 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--CCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--CeEEEEEC
Confidence 3567889999999999999999987765322 33566654
No 156
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.00 E-value=0.0004 Score=58.16 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.1
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..++|+|+||+||||+++.+++.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35789999999999999999998875
No 157
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.98 E-value=0.0062 Score=55.47 Aligned_cols=39 Identities=13% Similarity=-0.026 Sum_probs=29.2
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcc
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNG 92 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~ 92 (418)
.+..+.|.||||+||||+++.++..+....+. .+++++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~--~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK--KVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCC--CEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCC--eEEEEeC
Confidence 46688899999999999999999887654332 2444443
No 158
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.97 E-value=0.0038 Score=54.89 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=24.6
Q ss_pred eEEEEEecchhhhhhc-chhHHHHHHhhhccCCCcEEEEEeccCC
Q 014789 142 KTIIFVLDEFDLFAQG-KQRLLYSLLDAMQSVTSQAVVIGVSCRL 185 (418)
Q Consensus 142 ~~~viilDEid~l~~~-~~~~L~~l~~~~~~~~~~~~lI~~s~~~ 185 (418)
...+||+||+|.+... ....+..++.... .+.-+++.|...
T Consensus 173 ~~~~lViDEah~~~~~~~~~~l~~i~~~~~---~~~~~i~~SAT~ 214 (237)
T 3bor_A 173 WIKMFVLDEADEMLSRGFKDQIYEIFQKLN---TSIQVVLLSATM 214 (237)
T ss_dssp TCCEEEEESHHHHHHTTCHHHHHHHHHHSC---TTCEEEEECSSC
T ss_pred cCcEEEECCchHhhccCcHHHHHHHHHhCC---CCCeEEEEEEec
Confidence 4568999999988764 3345555554432 334455555444
No 159
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.97 E-value=0.0053 Score=53.26 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=19.4
Q ss_pred CceEEEECCCCCchHHH-HHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAV-LELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l-~~~~~~~l~ 78 (418)
+.++++.+|+|+|||.+ +-.+++.+.
T Consensus 51 ~~~~lv~~pTGsGKT~~~~~~~l~~l~ 77 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGTFSIAALQRID 77 (224)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHh
Confidence 35799999999999987 444555543
No 160
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.94 E-value=0.0012 Score=61.35 Aligned_cols=48 Identities=17% Similarity=0.260 Sum_probs=36.6
Q ss_pred hhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 33 PDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
.+.-.+.+...+...+..+...+++|+|++|+||||+++.++..+...
T Consensus 4 ~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~ 51 (359)
T 2ga8_A 4 THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEK 51 (359)
T ss_dssp HHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 344455566666666666666779999999999999999999987644
No 161
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.93 E-value=0.0063 Score=53.61 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.0
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
.+..++|+|+||+|||+++..++...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~ 54 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG 54 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 36678899999999999999877654
No 162
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.93 E-value=0.001 Score=56.96 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=26.8
Q ss_pred hcCCCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 49 TEACNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 49 ~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
....+..+.|.||+|+||||+++.++..+..
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~ 51 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLYQ 51 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4456778899999999999999999998873
No 163
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.89 E-value=0.00065 Score=57.24 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=23.4
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..++|+|++|+||||+++.+++.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999998874
No 164
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.88 E-value=0.06 Score=46.77 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=19.1
Q ss_pred CceEEEECCCCCchHHHH-HHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVL-ELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~-~~~~~~l~ 78 (418)
+.++++.+|+|+|||... -.++..+.
T Consensus 61 ~~~~l~~a~TGsGKT~~~~l~~l~~l~ 87 (230)
T 2oxc_A 61 GLDLIVQAKSGTGKTCVFSTIALDSLV 87 (230)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHH
Confidence 467999999999999874 34445543
No 165
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.88 E-value=0.0084 Score=56.11 Aligned_cols=106 Identities=18% Similarity=0.190 Sum_probs=59.8
Q ss_pred HHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccC-
Q 014789 42 FLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKM- 120 (418)
Q Consensus 42 ~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~- 120 (418)
+.+.-.+.-+.+..+.|.||+|+|||++++.+++.+...++. +.++++-+-.-. .-..++.+.+. ........
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~-v~~I~~lIGER~---~Ev~~~~~~~~--~~vV~atad 236 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPD-CVLMVLLIDERP---EEVTEMQRLVK--GEVVASTFD 236 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTT-SEEEEEEESSCH---HHHHHHHTTCS--SEEEEECTT
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCC-eeEEEEEecCCh---HHHHHHHHHhC--eEEEEeCCC
Confidence 344445566678899999999999999999999888766543 444444322211 12333333321 00000111
Q ss_pred CChHhHH------HHHHHHHhhcCCCceEEEEEecchhhhhh
Q 014789 121 ASFDDNS------QFMIEMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 121 ~~~~~~~------~~l~~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
.+..... -.+-+.+.. .++.++|++|++-.+..
T Consensus 237 ep~~~r~~~a~~alt~AEyfrd---~G~dVLil~DslTR~A~ 275 (422)
T 3ice_A 237 EPASRHVQVAEMVIEKAKRLVE---HKKDVIILLDSITRLAR 275 (422)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH---TSCEEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHh---cCCCEEEEEeCchHHHH
Confidence 1111111 112334443 35899999999988865
No 166
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.86 E-value=0.00074 Score=57.81 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=23.7
Q ss_pred HhcCCCceEEEECCCCCchHHHHHHHHHHH
Q 014789 48 VTEACNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 48 ~~~~~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
+....+..+.|.||+|+||||+++.++..+
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 344457789999999999999999998876
No 167
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.85 E-value=0.00076 Score=57.70 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=24.2
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
++..++|.|++|+||||+++.+++.+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 466899999999999999999998874
No 168
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.85 E-value=0.0016 Score=55.72 Aligned_cols=48 Identities=15% Similarity=0.017 Sum_probs=35.0
Q ss_pred ChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 32 SPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 32 gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
.|++.++.|.+.+... ....+..+.|.|++|+||||+++.+...+...
T Consensus 2 ~~~~~~~~l~~~~~~~-~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~ 49 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAI-KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQ 49 (201)
T ss_dssp CHHHHHHHHHHHHHTS-CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHh-ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3566777776665432 22345678899999999999999999887643
No 169
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.85 E-value=0.0032 Score=60.43 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
.+..++|+|+||+||||+++.+++.+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46678899999999999999987765
No 170
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.85 E-value=0.0036 Score=69.51 Aligned_cols=93 Identities=17% Similarity=0.193 Sum_probs=67.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh-cccccCCChHhHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-LLFSKMASFDDNSQFMI 131 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~~~~~~~~~l~ 131 (418)
+..+.||||+|||||+++-+++.+..... -..++++.....++ . .++.++.... .....+.+.++.+..+.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g---~~~~~i~~e~~~~~--~---~~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREG---KTCAFIDAEHALDP--I---YARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEECTTSCCCH--H---HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcC---CeEEEEecCCCCCH--H---HHHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 56799999999999999999998776654 34677777655554 2 2667765432 22344556677777777
Q ss_pred HHHhhcCCCceEEEEEecchhhhhhc
Q 014789 132 EMLRECGLAHKTIIFVLDEFDLFAQG 157 (418)
Q Consensus 132 ~~l~~~~~~~~~~viilDEid~l~~~ 157 (418)
.+++.. .+-+||||.+..+.+.
T Consensus 1503 ~~~~s~----~~~~vvvDsv~al~~~ 1524 (1706)
T 3cmw_A 1503 ALARSG----AVDVIVVDSVAALTPK 1524 (1706)
T ss_dssp HHHHHT----CCSEEEESCSTTCCCT
T ss_pred HHHHcC----CCCEEEEccHHhCCcc
Confidence 777764 5789999999988875
No 171
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.84 E-value=0.0056 Score=63.52 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=19.7
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
+..+++.||+|+|||+++..++..
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999977776543
No 172
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.83 E-value=0.01 Score=52.50 Aligned_cols=26 Identities=42% Similarity=0.618 Sum_probs=18.8
Q ss_pred CceEEEECCCCCchHHHHHH-HHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLEL-ILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~-~~~~l~ 78 (418)
+.++++.+|+|+|||...-. ++..+.
T Consensus 80 ~~~~lv~a~TGsGKT~~~~~~il~~l~ 106 (249)
T 3ber_A 80 GRDIIGLAETGSGKTGAFALPILNALL 106 (249)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCchhHhHHHHHHHHh
Confidence 46799999999999987543 334433
No 173
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.81 E-value=0.00071 Score=56.14 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.8
Q ss_pred eEEEECCCCCchHHHHHHHHHHHh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.++|.|++|+||||+++.+++.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988765
No 174
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.80 E-value=0.001 Score=56.32 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=23.4
Q ss_pred eEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
.++|.|+||+||||+++.+++.+...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 28 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999988754
No 175
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.80 E-value=0.0094 Score=50.84 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=18.7
Q ss_pred CceEEEECCCCCchHHHH-HHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVL-ELILTDL 77 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~-~~~~~~l 77 (418)
+.++++.+|+|+|||.+. -.++..+
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHH
Confidence 357999999999999874 3344444
No 176
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.79 E-value=0.0016 Score=56.14 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=32.5
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccC
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLH 95 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~ 95 (418)
..+..+.|.||+|+||||+++.++..+... +....++.+++...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQ-GLPAEVVPMDGFHL 63 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHT-TCCEEEEESGGGBC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CCceEEEecCCCcC
Confidence 346678899999999999999999888743 22355666666544
No 177
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.79 E-value=0.0011 Score=56.06 Aligned_cols=31 Identities=26% Similarity=0.195 Sum_probs=26.3
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
..+..++|.|++|+||||+++.++..+....
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~ 41 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEG 41 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 3466788999999999999999999887543
No 178
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.79 E-value=0.00073 Score=57.06 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=22.8
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
+.++|+||+|+||||+++.+++....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 46899999999999999999887654
No 179
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.75 E-value=0.00085 Score=55.79 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=22.7
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..+.|+|++|+||||+++.++..+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999988764
No 180
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.75 E-value=0.0028 Score=58.06 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=24.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
+..+.|.|++|+||||++..++..+....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g 132 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEG 132 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcC
Confidence 45688999999999999999998887543
No 181
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.74 E-value=0.001 Score=56.18 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=24.3
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
+..++|+|+||+||||+++.+++.+...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 30 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKE 30 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3578999999999999999999988743
No 182
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.73 E-value=0.001 Score=55.85 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..++|+|++|+||||+++.+++.+.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 356799999999999999999988764
No 183
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.73 E-value=0.0057 Score=53.03 Aligned_cols=110 Identities=16% Similarity=0.114 Sum_probs=52.9
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIE 132 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 132 (418)
+.-.+++|+.|+|||+.+-..+....... .++.++ .... .+.+. ..+.+.++....... .....+ +++
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g-~kvli~--kp~~-D~Ryg--~~i~sr~G~~~~a~~--i~~~~d----i~~ 86 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQ-YKCLVI--KYAK-DTRYS--SSFCTHDRNTMEALP--ACLLRD----VAQ 86 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTT-CCEEEE--EETT-CCCC-------------CEEEE--ESSGGG----GHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCC-CeEEEE--eecC-Cccch--HHHHhhcCCeeEEEe--cCCHHH----HHH
Confidence 45567899999999987777776665443 223333 3211 12122 345555544321000 111222 222
Q ss_pred HHhhcCCCceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCCh
Q 014789 133 MLRECGLAHKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLDA 187 (418)
Q Consensus 133 ~l~~~~~~~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~~ 187 (418)
.+. ..-+|+|||++.+.. +..+.+.... ..+-||.+..+.||
T Consensus 87 ~~~------~~dvViIDEaQF~~~-----v~el~~~l~~--~gi~VI~~GL~~DF 128 (234)
T 2orv_A 87 EAL------GVAVIGIDEGQFFPD-----IVEFCEAMAN--AGKTVIVAALDGTF 128 (234)
T ss_dssp HHT------TCSEEEESSGGGCTT-----HHHHHHHHHH--TTCEEEEECCSBCT
T ss_pred Hhc------cCCEEEEEchhhhhh-----HHHHHHHHHh--CCCEEEEEeccccc
Confidence 222 345999999999952 4555554443 33456666666554
No 184
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.68 E-value=0.0083 Score=57.98 Aligned_cols=40 Identities=15% Similarity=-0.052 Sum_probs=31.2
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcccc
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLL 94 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~ 94 (418)
++..++|.|+||+|||+++..++....... ..+++++...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g---~~vl~fSlEm 235 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDND---DVVNLHSLEM 235 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTT---CEEEEECSSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcC---CEEEEEECCC
Confidence 356788999999999999999998776542 4567776543
No 185
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=96.67 E-value=0.068 Score=47.55 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=15.9
Q ss_pred ceEEEECCCCCchHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLEL 72 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~ 72 (418)
.++++.+|+|+|||.+.-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 5799999999999987443
No 186
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.67 E-value=0.003 Score=56.66 Aligned_cols=27 Identities=30% Similarity=0.593 Sum_probs=22.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++..+.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 466788999999999999998876554
No 187
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.67 E-value=0.0011 Score=56.13 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=23.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..++|.|+||+||||+++.+++.+.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 55788999999999999999988773
No 188
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.66 E-value=0.0012 Score=54.63 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=23.2
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
...+++|+|++||||||+++.+++.+.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998875
No 189
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.64 E-value=0.0029 Score=53.66 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=22.8
Q ss_pred eEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
.+.|.|++|+||||+++.+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 37899999999999999999988654
No 190
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.64 E-value=0.0013 Score=57.26 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=23.8
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..++|.|+||+||||+++.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456799999999999999999988764
No 191
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.64 E-value=0.0011 Score=55.44 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.9
Q ss_pred ceEEEECCCCCchHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILT 75 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~ 75 (418)
..++|.|+||+||||+++.+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3688999999999999999887
No 192
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.64 E-value=0.054 Score=49.23 Aligned_cols=59 Identities=14% Similarity=-0.027 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHhcCC---------CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCC
Q 014789 35 SNYSKLKFLVSSSVTEAC---------NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHS 96 (418)
Q Consensus 35 ~e~~~l~~~l~~~~~~~~---------~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~ 96 (418)
..+..+.+.+...+.... +..+.+.|++|+||||++..++..+.... ..+..+++....
T Consensus 71 ~~~~~~~~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g---~~v~l~~~D~~r 138 (297)
T 1j8m_F 71 WFIKIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKG---FKVGLVGADVYR 138 (297)
T ss_dssp HHHHHHHHHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTT---CCEEEEECCCSS
T ss_pred HHHHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC---CeEEEEecCCCC
Confidence 334445555555443321 44677899999999999999998887543 334445554443
No 193
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.64 E-value=0.0033 Score=64.05 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 34 DSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 34 ~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
+.|.+++...+ . ..+..+|.||||||||+++-.++..+....
T Consensus 192 ~~Q~~AV~~al----~--~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~ 233 (646)
T 4b3f_X 192 TSQKEAVLFAL----S--QKELAIIHGPPGTGKTTTVVEIILQAVKQG 233 (646)
T ss_dssp HHHHHHHHHHH----H--CSSEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh----c--CCCceEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 45666666554 2 234688999999999998887777666543
No 194
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.63 E-value=0.028 Score=48.73 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=16.0
Q ss_pred CceEEEECCCCCchHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLE 71 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~ 71 (418)
+.++++.+|+|+|||.+.-
T Consensus 57 ~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp TCCEEEECCTTSCHHHHHH
T ss_pred CCCEEEECCCCChHHHHHH
Confidence 4679999999999997643
No 195
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.62 E-value=0.0032 Score=53.18 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.9
Q ss_pred eEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
.+.|+|++|+||||+++.+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~ 27 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQK 27 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 47899999999999999999988643
No 196
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.62 E-value=0.013 Score=53.39 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=29.9
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcccc
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLL 94 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~ 94 (418)
.+..+.|.|++|+||||++..++..+....+.++ ..+++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V--~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKI--AFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCE--EEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEE--EEEecCc
Confidence 4668889999999999999999988875333234 4444433
No 197
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.61 E-value=0.0012 Score=55.05 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=22.0
Q ss_pred eEEEECCCCCchHHHHHHHHHHHh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.++|.|+||+||||+++.+++.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998875
No 198
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.60 E-value=0.0013 Score=55.37 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=22.4
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHh
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
..++|+|+||+||||+++.+++.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998775
No 199
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.60 E-value=0.0014 Score=55.26 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.+..++|+|++||||||+++.+++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999887
No 200
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.58 E-value=0.014 Score=50.30 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=24.6
Q ss_pred hhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHH-HHHHHh
Q 014789 33 PDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLEL-ILTDLL 78 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~-~~~~l~ 78 (418)
++-|.+.+...+ . +.++++.+|+|+|||.+.-. ++..+.
T Consensus 28 ~~~Q~~~i~~~~----~---~~~~lv~a~TGsGKT~~~~~~~l~~l~ 67 (219)
T 1q0u_A 28 TEIQERIIPGAL----R---GESMVGQSQTGTGKTHAYLLPIMEKIK 67 (219)
T ss_dssp CHHHHHHHHHHH----H---TCCEEEECCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHh----C---CCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 445555554433 2 35799999999999987433 444443
No 201
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.57 E-value=0.002 Score=53.88 Aligned_cols=38 Identities=26% Similarity=0.327 Sum_probs=28.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcc
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNG 92 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~ 92 (418)
.+..+.|+|++|+||||+++.+...+.... +.++.+++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g---~~~i~~d~ 41 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHG---IPCYTLDG 41 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT---CCEEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCC---CcEEEECC
Confidence 456788999999999999999998875422 33455553
No 202
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.57 E-value=0.059 Score=46.31 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=18.1
Q ss_pred ceEEEECCCCCchHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.++++.+|+|+|||.+.-..+-.
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHH
Confidence 56999999999999876554433
No 203
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.55 E-value=0.0027 Score=59.35 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=21.8
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
.+..+-|.||.|+||||+++.++.-+
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 46678899999999999999887644
No 204
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.55 E-value=0.0013 Score=55.35 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=22.7
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..++|+|+||+||||+++.+++.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44688999999999999999988764
No 205
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.55 E-value=0.0018 Score=55.36 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=23.1
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..++|+|+||+||||+++.+++.+.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998774
No 206
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.54 E-value=0.08 Score=46.35 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=18.8
Q ss_pred CceEEEECCCCCchHHHHH-HHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLE-LILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~-~~~~~l~ 78 (418)
+.++++.+|+|+|||.+.- .++..+.
T Consensus 66 g~~~l~~apTGsGKT~~~~l~~l~~l~ 92 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYLLPAIVHIN 92 (242)
T ss_dssp TCCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCcCHHHHHHHHHHHHHHH
Confidence 3579999999999998743 3344443
No 207
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.54 E-value=0.0015 Score=55.41 Aligned_cols=27 Identities=33% Similarity=0.353 Sum_probs=23.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..++|.|+||+||||+++.+++.+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988764
No 208
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.53 E-value=0.0016 Score=54.20 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=22.8
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
.+..+.|.|++|+||||+++.++..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35678899999999999999998876
No 209
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.53 E-value=0.0015 Score=56.10 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=23.9
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..++|+||+|+||||+++.+++.+.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 466789999999999999999988774
No 210
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.53 E-value=0.0014 Score=54.40 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.2
Q ss_pred eEEEECCCCCchHHHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l 77 (418)
.++|+|+||+||||+++.+ +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5789999999999999988 544
No 211
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.52 E-value=0.0013 Score=55.62 Aligned_cols=25 Identities=36% Similarity=0.448 Sum_probs=21.9
Q ss_pred CCceEEEECCCCCchHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.+..+.|.||+|+||||+++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4567889999999999999998765
No 212
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.51 E-value=0.0032 Score=54.31 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=29.7
Q ss_pred cCCCceEEEECCCCCchHHHHHHHHHHHh-hhCCCCeEEEEEc
Q 014789 50 EACNNSILLLGPRGSGKIAVLELILTDLL-LEYPDTISVIKLN 91 (418)
Q Consensus 50 ~~~~~~ill~G~~GtGKT~l~~~~~~~l~-~~~~~~~~~v~in 91 (418)
...+..++|.|++|+||||+++.+.+.+. ... ..+++++
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g---~~~~~~~ 61 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR---VHAYRLD 61 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC---CCEEEEC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccC---CcEEEEC
Confidence 34567888999999999999999999887 332 3345555
No 213
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.51 E-value=0.0025 Score=54.92 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=26.0
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
.+..++|+|++|+||||+++.+++.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~ 37 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAG 37 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 456789999999999999999999887654
No 214
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.50 E-value=0.0017 Score=56.21 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.3
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..++|.||||+||+|.++.+++.+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 466788999999999999999988753
No 215
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.50 E-value=0.0017 Score=54.53 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=22.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..+.|.||+|+||||+++.++..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45788999999999999999988764
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.50 E-value=0.033 Score=54.46 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHhc---------CCCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 36 NYSKLKFLVSSSVTE---------ACNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 36 e~~~l~~~l~~~~~~---------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
..+.+.+.|...+.. ..+..+.|+|++|+||||++..++..+...
T Consensus 75 ~~~~v~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 75 IQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp HHHHHHHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 344455555555443 124578899999999999999999888764
No 217
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.48 E-value=0.024 Score=48.53 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=30.0
Q ss_pred CCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHH
Q 014789 30 SDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
+.-++-|.+.+...+ . +.++++.+|+|+|||.++-..+..+
T Consensus 32 ~~l~~~Q~~~i~~~~----~---~~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 32 LQLRPYQMEVAQPAL----E---GKNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCCCHHHHHHHHHHH----T---TCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHh----c---CCCEEEEcCCCCCHHHHHHHHHHHH
Confidence 344777777666554 2 3579999999999999887776554
No 218
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.47 E-value=0.0017 Score=55.54 Aligned_cols=26 Identities=38% Similarity=0.418 Sum_probs=23.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..++|+|++|+||||+++.+++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999988873
No 219
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.46 E-value=0.0019 Score=55.52 Aligned_cols=28 Identities=29% Similarity=0.259 Sum_probs=24.3
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
+..++|.|+||+||||+++.+++.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4568899999999999999999988653
No 220
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.46 E-value=0.0017 Score=54.88 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.5
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..++|.|+|||||||+++.+++.+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999988764
No 221
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.45 E-value=0.0016 Score=56.14 Aligned_cols=27 Identities=37% Similarity=0.429 Sum_probs=23.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|+||+|+||||+++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 466788999999999999999988764
No 222
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.44 E-value=0.0018 Score=55.04 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.2
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..++|.|+||+||||+++.+++.+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998774
No 223
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.44 E-value=0.072 Score=51.13 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=31.4
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCC
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHS 96 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~ 96 (418)
+..++++|++|+||||++..++..+....+ ..+.-++|....
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G--~kVllvd~D~~r 141 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHK--KKVLVVSADVYR 141 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSC--CCEEEEECCCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcC--CeEEEEecCCCC
Confidence 457889999999999999999999887623 344555555443
No 224
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.43 E-value=0.0051 Score=54.34 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=24.1
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
..+..++|+||||+||||+++.+++.+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3566799999999999999999988763
No 225
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.42 E-value=0.0018 Score=56.00 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.3
Q ss_pred eEEEECCCCCchHHHHHHHHHHHh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.++|+|+||+||||+++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988764
No 226
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.42 E-value=0.0021 Score=53.30 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=22.3
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHh
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
..++|+|++|+||||+++.+++.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998774
No 227
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.42 E-value=0.071 Score=43.03 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.2
Q ss_pred ceEEEECCCCCchHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
-.+++.|++|+|||++++.+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999998754
No 228
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.41 E-value=0.015 Score=57.22 Aligned_cols=38 Identities=8% Similarity=-0.159 Sum_probs=29.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcc
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNG 92 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~ 92 (418)
+..++|.|+||+|||+++..++..+....+ ..+++++.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g--~~vl~~s~ 279 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMG--KKVGLAML 279 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSC--CCEEEEES
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcC--CcEEEEec
Confidence 557889999999999999999988765422 34566654
No 229
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.41 E-value=0.039 Score=56.80 Aligned_cols=36 Identities=33% Similarity=0.412 Sum_probs=25.2
Q ss_pred CceEEEECCCCCchHHHHHHHH-HHHhhhCCCCeEEEEEc
Q 014789 53 NNSILLLGPRGSGKIAVLELIL-TDLLLEYPDTISVIKLN 91 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~-~~l~~~~~~~~~~v~in 91 (418)
+.++++.||+|+|||+.+-..+ +.+.... ..++++.
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~---~~il~i~ 82 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMGIISFLLKNG---GKAIYVT 82 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHHSC---SEEEEEC
T ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHHCC---CeEEEEe
Confidence 6789999999999999985544 4443222 4556664
No 230
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=96.41 E-value=0.036 Score=52.67 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=18.9
Q ss_pred CceEEEECCCCCchHHHHHH-HHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLEL-ILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~-~~~~l~ 78 (418)
+.++++.+|+|+|||...-. +++.+.
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~~~~~~~~ 103 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAISILQQIE 103 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHHHHHHHCC
T ss_pred CCCEEEECCCCCcccHHHHHHHHHHHh
Confidence 45699999999999987443 444443
No 231
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.40 E-value=0.0018 Score=56.28 Aligned_cols=27 Identities=30% Similarity=0.274 Sum_probs=23.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..++|.|+||+||||+++.+++.+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999998764
No 232
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.40 E-value=0.0014 Score=54.93 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=19.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..++|+|+||+||||+++.+++.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999988765
No 233
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.40 E-value=0.037 Score=54.78 Aligned_cols=122 Identities=13% Similarity=0.183 Sum_probs=69.2
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHh------h-hcc----cccC
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCME------H-QLL----FSKM 120 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~------~-~~~----~~~~ 120 (418)
.+..++|.||+|+|||++++.++..+.... -.++++.... ....+...+ ..++.. . ... .+..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G---~~vi~~~~ee--~~~~l~~~~-~~~g~~~~~~~~~g~~~~~~~~p~~ 353 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANK---ERAILFAYEE--SRAQLLRNA-YSWGMDFEEMERQNLLKIVCAYPES 353 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTT---CCEEEEESSS--CHHHHHHHH-HTTSCCHHHHHHTTSEEECCCCGGG
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCC---CCEEEEEEeC--CHHHHHHHH-HHcCCCHHHHHhCCCEEEEEecccc
Confidence 466788999999999999999998776432 2245554332 222222221 111100 0 000 1122
Q ss_pred CChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhhc-----chhHHHHHHhhhccCCCcEEEEEeccCC
Q 014789 121 ASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQG-----KQRLLYSLLDAMQSVTSQAVVIGVSCRL 185 (418)
Q Consensus 121 ~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~~-----~~~~L~~l~~~~~~~~~~~~lI~~s~~~ 185 (418)
.+..+....+....... .|-++|||=+..+... ....++.+++.... ..+.+|.++...
T Consensus 354 LS~g~~q~~~~a~~l~~----~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~~--~g~tvilvsh~~ 417 (525)
T 1tf7_A 354 AGLEDHLQIIKSEINDF----KPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQ--EEITGLFTNTSD 417 (525)
T ss_dssp SCHHHHHHHHHHHHHTT----CCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHH--TTCEEEEEEECS
T ss_pred CCHHHHHHHHHHHHHhh----CCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHHh--CCCEEEEEECcc
Confidence 35555555555554432 5789999977776665 45667777665543 345666666554
No 234
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.38 E-value=0.0017 Score=56.15 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.6
Q ss_pred eEEEECCCCCchHHHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l 77 (418)
.++|+|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998775
No 235
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.37 E-value=0.0023 Score=55.06 Aligned_cols=30 Identities=23% Similarity=0.181 Sum_probs=25.9
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
.+..++|+|++|+||||+++.+++.+....
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 356789999999999999999999887654
No 236
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.33 E-value=0.026 Score=51.48 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=21.1
Q ss_pred hcCCCceEEEECCCCCchHHHHH-HHHHHHh
Q 014789 49 TEACNNSILLLGPRGSGKIAVLE-LILTDLL 78 (418)
Q Consensus 49 ~~~~~~~ill~G~~GtGKT~l~~-~~~~~l~ 78 (418)
..+.+.++++.+|+|+|||...- .+++.+.
T Consensus 127 l~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~ 157 (300)
T 3fmo_B 127 LAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE 157 (300)
T ss_dssp TSSSCCCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred HcCCCCeEEEECCCCCCccHHHHHHHHHhhh
Confidence 33345789999999999997643 4445443
No 237
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=96.33 E-value=0.15 Score=44.91 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=18.2
Q ss_pred CceEEEECCCCCchHHHHHH-HHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLEL-ILTDL 77 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~-~~~~l 77 (418)
+.++++.+|+|+|||.+.-. ++..+
T Consensus 60 ~~~~l~~a~TGsGKT~~~~~~~l~~l 85 (253)
T 1wrb_A 60 HRDIMACAQTGSGKTAAFLIPIINHL 85 (253)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHH
Confidence 35799999999999986443 33443
No 238
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.31 E-value=0.0021 Score=54.28 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=22.7
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..++|+|+||+||||+++.+++.+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999988764
No 239
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.31 E-value=0.0026 Score=52.46 Aligned_cols=24 Identities=38% Similarity=0.358 Sum_probs=21.7
Q ss_pred eEEEECCCCCchHHHHHHHHHHHh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.++|+|++|+||||+++.+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988775
No 240
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.30 E-value=0.003 Score=55.46 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=23.9
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..++|.|+||+||||+++.+++.+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356799999999999999999998874
No 241
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.30 E-value=0.018 Score=58.52 Aligned_cols=27 Identities=33% Similarity=0.415 Sum_probs=20.0
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
..++++|.|+||||||+++-.-+..+-
T Consensus 21 ~~~~~lV~a~aGsGKT~~l~~ri~~l~ 47 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVLVHRIAWLM 47 (647)
T ss_dssp CSSCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 356799999999999987655444333
No 242
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.30 E-value=0.0024 Score=54.92 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.1
Q ss_pred eEEEECCCCCchHHHHHHHHHHHh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.++|.||||+||+|.++.+++.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999998753
No 243
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.29 E-value=0.0024 Score=54.65 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.5
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..++|+|++|+||||+++.+++.+.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45688999999999999999988753
No 244
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=96.29 E-value=0.042 Score=51.75 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=18.3
Q ss_pred ceEEEECCCCCchHHHH-HHHHHHHh
Q 014789 54 NSILLLGPRGSGKIAVL-ELILTDLL 78 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~-~~~~~~l~ 78 (418)
.++++.+|+|+|||.+. -.+++.+.
T Consensus 59 ~~~lv~~~TGsGKT~~~~~~~~~~l~ 84 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTFSIAALQRID 84 (394)
T ss_dssp CCEEECCCSSHHHHHHHHHHHHHHCC
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhh
Confidence 56999999999999874 33444443
No 245
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.28 E-value=0.0021 Score=56.09 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=22.9
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..++|.|+||+||||+++.+++.+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56799999999999999999988763
No 246
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.27 E-value=0.0053 Score=50.80 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=25.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
...+.|.|++|+||||++..++..+....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g 32 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREG 32 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence 45688999999999999999999887653
No 247
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.27 E-value=0.021 Score=53.15 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=25.6
Q ss_pred hhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHH
Q 014789 33 PDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
++-|.+.+...+ .+ ..++++.+|+|+|||.+.-..+-.+
T Consensus 30 ~~~Q~~~i~~~~----~~--~~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 30 TDIQMKVIPLFL----ND--EYNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp CHHHHHHHHHHH----HT--CSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh----CC--CCCEEEECCCCChHHHHHHHHHHHH
Confidence 445555554443 22 3589999999999998866554433
No 248
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=96.27 E-value=0.049 Score=56.12 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=60.3
Q ss_pred CceEEEECCCCCchHHHHH-HHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHH--hhhccc---ccCCChHh-
Q 014789 53 NNSILLLGPRGSGKIAVLE-LILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCM--EHQLLF---SKMASFDD- 125 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~-~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~--~~~~~~---~~~~~~~~- 125 (418)
+.++++.||+|+|||+++. .+++.+.... ..++++..... +..++.+.+.. ..+... .+......
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~---~~~l~i~P~ra-----La~q~~~~~~~l~~~g~~v~~~~G~~~~~~~ 110 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQG---GKAVYIVPLKA-----LAEEKFQEFQDWEKIGLRVAMATGDYDSKDE 110 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHHC---SEEEEECSSGG-----GHHHHHHHTGGGGGGTCCEEEECSCSSCCCG
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCC---CEEEEEcCcHH-----HHHHHHHHHHHHHhcCCEEEEecCCCCcccc
Confidence 5789999999999999874 4444544333 45666653221 23344444321 111100 00000000
Q ss_pred ----------HHHHHHHHHhhcCC-CceEEEEEecchhhhhhc-chhHHHHHHhhhccCCCcEEEEEeccCC
Q 014789 126 ----------NSQFMIEMLRECGL-AHKTIIFVLDEFDLFAQG-KQRLLYSLLDAMQSVTSQAVVIGVSCRL 185 (418)
Q Consensus 126 ----------~~~~l~~~l~~~~~-~~~~~viilDEid~l~~~-~~~~L~~l~~~~~~~~~~~~lI~~s~~~ 185 (418)
.-+.+...+..... -...-+|||||+|.+... ....+..++..... ++-+|+.|...
T Consensus 111 ~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~---~~~ii~lSATl 179 (720)
T 2zj8_A 111 WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLG---KAQIIGLSATI 179 (720)
T ss_dssp GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBT---TBEEEEEECCC
T ss_pred ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhc---CCeEEEEcCCc
Confidence 01222233332221 246789999999998763 33344444433321 34555555544
No 249
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.26 E-value=0.0023 Score=56.96 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.6
Q ss_pred eEEEECCCCCchHHHHHHHHHHHh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.++|.||+||||||+++.+++.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 578999999999999999998764
No 250
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.26 E-value=0.0025 Score=55.22 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.1
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..++|.|+||+||||+++.+++.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998874
No 251
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.25 E-value=0.0029 Score=54.06 Aligned_cols=26 Identities=23% Similarity=0.516 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
.+..+.|.||+|+||||+++.++..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45678899999999999999988764
No 252
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.25 E-value=0.003 Score=53.70 Aligned_cols=27 Identities=19% Similarity=0.441 Sum_probs=23.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|+||+|+||||+++.++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 467889999999999999999988754
No 253
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.25 E-value=0.012 Score=56.69 Aligned_cols=27 Identities=15% Similarity=0.169 Sum_probs=20.5
Q ss_pred CceEEEECCCCCchHHHH-HHHHHHHhh
Q 014789 53 NNSILLLGPRGSGKIAVL-ELILTDLLL 79 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~-~~~~~~l~~ 79 (418)
+.++++.||+|+|||.+. -.+++.+..
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~ 29 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK 29 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 468999999999999975 555544433
No 254
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.24 E-value=0.0026 Score=53.69 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=22.6
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
..+.|.||+|+||||+++.++..+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 45789999999999999999987753
No 255
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=96.23 E-value=0.033 Score=52.44 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=18.4
Q ss_pred CCceEEEECCCCCchHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELIL 74 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~ 74 (418)
.+.++++.+|+|+|||...-..+
T Consensus 43 ~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 43 PPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp SCCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 45789999999999998765433
No 256
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.23 E-value=0.0027 Score=54.13 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.9
Q ss_pred eEEEECCCCCchHHHHHHHHHHHh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.++|.|++|+||||+++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 478999999999999999998875
No 257
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.22 E-value=0.0031 Score=55.80 Aligned_cols=27 Identities=33% Similarity=0.381 Sum_probs=23.8
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||+|+||||+++.+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998764
No 258
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.22 E-value=0.019 Score=54.47 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=20.1
Q ss_pred CCceEEEECCCCCchHHHHH-HHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLE-LILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~-~~~~~l~ 78 (418)
.+.++++.+|+|+|||.+.- .++..+.
T Consensus 63 ~~~~~lv~apTGsGKT~~~~~~~~~~~~ 90 (412)
T 3fht_A 63 PPQNLIAQSQSGTGKTAAFVLAMLSQVE 90 (412)
T ss_dssp SCCCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCCeEEEECCCCchHHHHHHHHHHHHhh
Confidence 45789999999999998753 3444443
No 259
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.19 E-value=0.073 Score=46.34 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=16.5
Q ss_pred CceEEEECCCCCchHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLEL 72 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~ 72 (418)
+.++++.+|+|+|||.+.-.
T Consensus 62 ~~~~li~a~TGsGKT~~~~~ 81 (236)
T 2pl3_A 62 GKDVLGAAKTGSGKTLAFLV 81 (236)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHH
Confidence 46799999999999986443
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.18 E-value=0.0034 Score=53.71 Aligned_cols=26 Identities=38% Similarity=0.439 Sum_probs=22.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
.+..+.|.||+|+||||+++.++..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45678899999999999999988765
No 261
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=96.17 E-value=0.04 Score=52.12 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=16.8
Q ss_pred ceEEEECCCCCchHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELIL 74 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~ 74 (418)
.++++.+|+|+|||.+.-..+
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH
Confidence 469999999999998654443
No 262
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.16 E-value=0.0032 Score=53.75 Aligned_cols=26 Identities=27% Similarity=0.581 Sum_probs=22.3
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..+.|.||+|+||||+++.++..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45788999999999999999988764
No 263
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.16 E-value=0.0091 Score=59.15 Aligned_cols=124 Identities=14% Similarity=0.094 Sum_probs=64.9
Q ss_pred CCceEEEECCCCCchHHHHHHHH-HHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh-------ccccc-C--
Q 014789 52 CNNSILLLGPRGSGKIAVLELIL-TDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-------LLFSK-M-- 120 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~-~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-------~~~~~-~-- 120 (418)
.+..+.|.||+|+||||+++.++ ..+.... -..+++++... ... +......++...+ ..... .
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~~~--~~~-~~~~~~~~g~~~q~~~~~~~l~~~~~~~~ 111 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EPGVFVTFEET--PQD-IIKNARSFGWDLAKLVDEGKLFILDASPD 111 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CCEEEEESSSC--HHH-HHHHHGGGTCCHHHHHHTTSEEEEECCCC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCC---CCEEEEEEeCC--HHH-HHHHHHHcCCChHHhhccCcEEEEecCcc
Confidence 57788999999999999999963 4443322 12577776552 221 2222222211000 00000 0
Q ss_pred ---------CChHhHHHHHHHHHhhcCCCceEEEEEecchhhhhh------cchhHHHHHHhhhccCCCcEEEEEeccCC
Q 014789 121 ---------ASFDDNSQFMIEMLRECGLAHKTIIFVLDEFDLFAQ------GKQRLLYSLLDAMQSVTSQAVVIGVSCRL 185 (418)
Q Consensus 121 ---------~~~~~~~~~l~~~l~~~~~~~~~~viilDEid~l~~------~~~~~L~~l~~~~~~~~~~~~lI~~s~~~ 185 (418)
.+..+..+.+...+... .+-+++|||.-.+.+ .....+..+++.... ..+.+|.++...
T Consensus 112 ~~~~~~l~~~~l~~~~~~~~~~LS~g----~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~--~g~tvl~itH~~ 185 (525)
T 1tf7_A 112 PEGQEVVGGFDLSALIERINYAIQKY----RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ--IGATTVMTTERI 185 (525)
T ss_dssp SSCCSCCSSHHHHHHHHHHHHHHHHH----TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH--HTCEEEEEEECS
T ss_pred cchhhhhcccCHHHHHHHHHHHHHHc----CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH--CCCEEEEEecCC
Confidence 01122333444444432 466899999865432 233456666655432 245777777776
Q ss_pred Ch
Q 014789 186 DA 187 (418)
Q Consensus 186 ~~ 187 (418)
+.
T Consensus 186 ~~ 187 (525)
T 1tf7_A 186 EE 187 (525)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 264
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=96.15 E-value=0.021 Score=58.73 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=24.0
Q ss_pred CceEEEECCCCCchHHHHHHHH-HHHhhhCCCCeEEEEEc
Q 014789 53 NNSILLLGPRGSGKIAVLELIL-TDLLLEYPDTISVIKLN 91 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~-~~l~~~~~~~~~~v~in 91 (418)
+.++++.||+|+|||+.+...+ +.+.. . ..++++.
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~-~---~~~l~i~ 75 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIK-G---GKSLYVV 75 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHT-T---CCEEEEE
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHh-C---CcEEEEe
Confidence 5689999999999999885544 44332 2 3455554
No 265
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.13 E-value=0.0031 Score=53.87 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
+..++|.|++|+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5578999999999999999998876
No 266
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=96.11 E-value=0.055 Score=51.37 Aligned_cols=22 Identities=18% Similarity=0.441 Sum_probs=17.3
Q ss_pred CceEEEECCCCCchHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELIL 74 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~ 74 (418)
+.++++.+|+|+|||...-..+
T Consensus 74 ~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 74 GRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp TCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCchHHHHHHH
Confidence 4579999999999997655433
No 267
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.10 E-value=0.027 Score=45.66 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=20.4
Q ss_pred ceEEEECCCCCchHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
-.+++.|++|+|||++++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998764
No 268
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.10 E-value=0.0076 Score=54.72 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHh--cCCCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 35 SNYSKLKFLVSSSVT--EACNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 35 ~e~~~l~~~l~~~~~--~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
..++.|.+.+..... .+.+..+.|.|++|+||||+++.+...+...
T Consensus 11 ~~~~~l~~~i~~~~~~~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~ 58 (290)
T 1odf_A 11 YTIEFLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEK 58 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 344455555544322 2335567799999999999999999888753
No 269
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.08 E-value=0.0033 Score=53.88 Aligned_cols=29 Identities=21% Similarity=-0.004 Sum_probs=20.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
.+.-.+++|+-|+|||+.+-..+..+...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~ 55 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYA 55 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35667899999999999554445555543
No 270
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.08 E-value=0.1 Score=49.78 Aligned_cols=56 Identities=13% Similarity=0.063 Sum_probs=36.8
Q ss_pred hhhHHHHHHHHHHHHhcC-------CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcc
Q 014789 34 DSNYSKLKFLVSSSVTEA-------CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNG 92 (418)
Q Consensus 34 ~~e~~~l~~~l~~~~~~~-------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~ 92 (418)
+...+.+.+.+...+... .+..+.+.|++|+||||++..++..+.... ..+..++|
T Consensus 72 ~~~~~~v~~~L~~~~~~~~~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g---~~Vllvd~ 134 (425)
T 2ffh_A 72 EVILATVYEALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKG---RRPLLVAA 134 (425)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCcccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEeec
Confidence 334445555555554332 245677899999999999999999887653 33444454
No 271
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.08 E-value=0.0033 Score=54.27 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.4
Q ss_pred eEEEECCCCCchHHHHHHHHHHHh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.++|.|+||+||||+++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988763
No 272
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.06 E-value=0.034 Score=50.68 Aligned_cols=48 Identities=23% Similarity=0.197 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHhc-----------CCCceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 34 DSNYSKLKFLVSSSVTE-----------ACNNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 34 ~~e~~~l~~~l~~~~~~-----------~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
+...+.+.+.+...+.. ..+..+.|.||.|+||||+++.++..+....
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~ 128 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG 128 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 34445555555554432 1245678999999999999999998887544
No 273
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.05 E-value=0.021 Score=54.85 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=30.5
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccC
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLH 95 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~ 95 (418)
+..+.|+|++|+||||++..++..+.... ..+..+++...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G---~kVllv~~D~~ 138 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG---LKPALIAADTY 138 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH---CCEEEECCSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC---CeEEEEecccc
Confidence 45789999999999999999999887653 34455555443
No 274
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.03 E-value=0.0041 Score=54.14 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=21.5
Q ss_pred eEEEECCCCCchHHHHHHHHHHHh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.++|.|+||+||||+++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988773
No 275
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.02 E-value=0.0045 Score=53.85 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.1
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHh
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
..+.|.||+|+||||+++.+++.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999988764
No 276
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.00 E-value=0.0041 Score=53.98 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=23.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||+|+||||+++.++..+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 467888999999999999999988764
No 277
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.00 E-value=0.028 Score=45.40 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.8
Q ss_pred eEEEECCCCCchHHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.+++.|++|+|||++++.+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998764
No 278
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.98 E-value=0.0034 Score=52.99 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.2
Q ss_pred eEEEECCCCCchHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILT 75 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~ 75 (418)
.+.|.||+|+||||+++.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999976
No 279
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.97 E-value=0.0045 Score=53.21 Aligned_cols=28 Identities=21% Similarity=0.158 Sum_probs=23.5
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
..+..+.|.||+|+||||+++.++..+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456788999999999999999988765
No 280
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.95 E-value=0.018 Score=55.15 Aligned_cols=111 Identities=15% Similarity=0.090 Sum_probs=55.1
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhhcccccCCChHhHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQLLFSKMASFDDNSQFMIE 132 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~ 132 (418)
....+|.|+||||||+++...+.. . .. ..+. .+ .....++-+.+.... ............ ..
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~----~--~~--lVlT---pT--~~aa~~l~~kl~~~~-~~~~~~~~V~T~----ds 222 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF----E--ED--LILV---PG--RQAAEMIRRRANASG-IIVATKDNVRTV----DS 222 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT----T--TC--EEEE---SC--HHHHHHHHHHHTTTS-CCCCCTTTEEEH----HH
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc----C--Ce--EEEe---CC--HHHHHHHHHHhhhcC-ccccccceEEEe----HH
Confidence 456789999999999999877642 1 11 1111 11 223344444442210 000001111111 11
Q ss_pred HHhhcCCC--ceEEEEEecchhhhhhcchhHHHHHHhhhccCCCcEEEEEeccCCC
Q 014789 133 MLRECGLA--HKTIIFVLDEFDLFAQGKQRLLYSLLDAMQSVTSQAVVIGVSCRLD 186 (418)
Q Consensus 133 ~l~~~~~~--~~~~viilDEid~l~~~~~~~L~~l~~~~~~~~~~~~lI~~s~~~~ 186 (418)
.|...... ...-++||||+-.+.. ..++.++.... ...++++|-.+-.+
T Consensus 223 fL~~~~~~~~~~~d~liiDE~sm~~~---~~l~~l~~~~~--~~~vilvGD~~Qlp 273 (446)
T 3vkw_A 223 FLMNYGKGARCQFKRLFIDEGLMLHT---GCVNFLVEMSL--CDIAYVYGDTQQIP 273 (446)
T ss_dssp HHHTTTSSCCCCCSEEEEETGGGSCH---HHHHHHHHHTT--CSEEEEEECTTSCC
T ss_pred hhcCCCCCCCCcCCEEEEeCcccCCH---HHHHHHHHhCC--CCEEEEecCccccc
Confidence 22221100 1256899999986643 45555554433 26788888666544
No 281
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.94 E-value=0.038 Score=45.77 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=20.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
...++|.|++|+|||++++.+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 346899999999999999998854
No 282
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=95.94 E-value=0.02 Score=55.69 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=21.1
Q ss_pred CceEEEECCCCCchHHH-HHHHHHHHhh
Q 014789 53 NNSILLLGPRGSGKIAV-LELILTDLLL 79 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l-~~~~~~~l~~ 79 (418)
+.++++.||+|+|||+. +-.+++.+..
T Consensus 21 ~~~vlv~a~TGsGKT~~~~l~il~~~~~ 48 (459)
T 2z83_A 21 RQMTVLDLHPGSGKTRKILPQIIKDAIQ 48 (459)
T ss_dssp TCEEEECCCTTSCTTTTHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 57899999999999997 5556655543
No 283
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.93 E-value=0.0099 Score=51.97 Aligned_cols=28 Identities=32% Similarity=0.507 Sum_probs=24.8
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
.+..+.|.|++|+||||+++.+.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3567889999999999999999998876
No 284
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.93 E-value=0.034 Score=45.15 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.9
Q ss_pred eEEEECCCCCchHHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.+++.|++|+|||++++.+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999998864
No 285
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=95.92 E-value=0.059 Score=53.04 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=24.5
Q ss_pred CCceEEEECCCCCchHHHHH-HHHHHHhhhCCCCeEEEEEc
Q 014789 52 CNNSILLLGPRGSGKIAVLE-LILTDLLLEYPDTISVIKLN 91 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~-~~~~~l~~~~~~~~~~v~in 91 (418)
.+.++++.+|+|+|||.+.- .++..+..... ...++++.
T Consensus 157 ~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~-~~~vLvl~ 196 (508)
T 3fho_A 157 PPRNMIGQSQSGTGKTAAFALTMLSRVDASVP-KPQAICLA 196 (508)
T ss_dssp SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCC-SCCEEEEC
T ss_pred CCCCEEEECCCCccHHHHHHHHHHHHHHhCCC-CceEEEEE
Confidence 35789999999999998744 34454433221 23445543
No 286
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.92 E-value=0.01 Score=51.40 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=29.1
Q ss_pred HHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 42 FLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 42 ~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
..++..........++|.|.+|+|||+++..++......
T Consensus 27 ~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 27 DKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 333443444556788999999999999999999876543
No 287
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.91 E-value=0.011 Score=59.87 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=29.5
Q ss_pred hhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 33 PDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
-+.|.+.+...+ . .+..+|.||||||||+++..++..+..
T Consensus 182 n~~Q~~av~~~l----~---~~~~li~GppGTGKT~~~~~~i~~l~~ 221 (624)
T 2gk6_A 182 NHSQVYAVKTVL----Q---RPLSLIQGPPGTGKTVTSATIVYHLAR 221 (624)
T ss_dssp CHHHHHHHHHHH----T---CSEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHh----c---CCCeEEECCCCCCHHHHHHHHHHHHHH
Confidence 345556555543 2 357899999999999999988887764
No 288
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.90 E-value=0.028 Score=51.10 Aligned_cols=29 Identities=24% Similarity=0.201 Sum_probs=24.4
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
+..+.++|++|+||||++..++..+....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~ 126 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKG 126 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 45677899999999999999998887543
No 289
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.90 E-value=0.0071 Score=55.53 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.4
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHh
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
..++|+||+|+|||+++..+++.+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999998764
No 290
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=95.87 E-value=0.029 Score=54.74 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=19.9
Q ss_pred CCCceEEEECCCCCchHHHH-HHHHHHH
Q 014789 51 ACNNSILLLGPRGSGKIAVL-ELILTDL 77 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~-~~~~~~l 77 (418)
+.+.++++.||+|+|||.+. -.++..+
T Consensus 129 ~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 129 EPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp BSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred CCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 34689999999999999874 3344433
No 291
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.87 E-value=0.0093 Score=51.50 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=30.6
Q ss_pred hhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 33 PDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
..+..+.+...+ .......+.|.|++|+||||++..++..+..
T Consensus 14 ~~~~~~~~~~~~----~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 14 NKRLAEKNREAL----RESGTVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp HHHHHHHHHHHH----HHHTCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHhh----cccCceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 334444444433 3335678999999999999999999987654
No 292
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.87 E-value=0.044 Score=46.36 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=20.9
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
...++|.|++|+|||++++.+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999998754
No 293
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.83 E-value=0.0058 Score=54.18 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=23.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..+.|.|++|+||||+++.++..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998875
No 294
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.82 E-value=0.0084 Score=53.54 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=25.9
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
.++..+.|.||+|+||||+++.++..+...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 456788999999999999999999887654
No 295
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.82 E-value=0.011 Score=55.62 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=23.4
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHH
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
..+..+.|+||+|+||||+++.++..+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 346688999999999999999998764
No 296
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=95.81 E-value=0.097 Score=52.12 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=16.7
Q ss_pred CCceEEEECCCCCchHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLE 71 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~ 71 (418)
.+..+++.+|+|+|||.+.-
T Consensus 110 ~~~~~lv~apTGsGKTl~~~ 129 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAFL 129 (563)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCCeEEEECCCCCCccHHHH
Confidence 46789999999999998533
No 297
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.80 E-value=0.025 Score=51.99 Aligned_cols=41 Identities=22% Similarity=0.198 Sum_probs=28.8
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHhhh-CCCCeEEEEEcccc
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLLLE-YPDTISVIKLNGLL 94 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~~~-~~~~~~~v~in~~~ 94 (418)
..+-|.||+|+||||+++.+...+... ....+.++..++..
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 356799999999999999988877632 11235556666544
No 298
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.79 E-value=0.046 Score=44.26 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.7
Q ss_pred eEEEECCCCCchHHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.+++.|++|+|||++++.+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 299
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.78 E-value=0.0068 Score=53.02 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..+.|.||+|+||||+++.+++.+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999988774
No 300
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=95.77 E-value=0.024 Score=54.98 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=19.5
Q ss_pred CceEEEECCCCCchHHH-HHHHHHHHhh
Q 014789 53 NNSILLLGPRGSGKIAV-LELILTDLLL 79 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l-~~~~~~~l~~ 79 (418)
...+++.||+|+|||+. +-.++..+..
T Consensus 19 ~~~~lv~a~TGsGKT~~~~~~~l~~~~~ 46 (451)
T 2jlq_A 19 KRLTIMDLHPGAGKTKRILPSIVREALL 46 (451)
T ss_dssp TCEEEECCCTTSSCCTTHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHhhHHHHHHHHHHHh
Confidence 45679999999999984 5555554443
No 301
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.77 E-value=0.01 Score=49.40 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=28.1
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEc
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLN 91 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in 91 (418)
...+.|.|++|+||||+++.++..+.... ..+.++...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g-~~v~~i~~~ 43 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARG-IRPGLIKHT 43 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTT-CCEEEEEEC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccC-CceeEEeeC
Confidence 45688999999999999999999876543 224444443
No 302
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.77 E-value=0.012 Score=53.81 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=25.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
.+..+.|.||+|+||||+++.++..+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~ 130 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLG 130 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 356788999999999999999998887544
No 303
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.77 E-value=0.02 Score=52.40 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=30.8
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhh-hCCCCeEEEEEccccC
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLL-EYPDTISVIKLNGLLH 95 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~-~~~~~~~~v~in~~~~ 95 (418)
..+..+-|.||+|+||||+++.+...+.. .....+.++..++...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~ 123 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH 123 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC
Confidence 34567789999999999999999887752 1112255555566543
No 304
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.76 E-value=0.0089 Score=57.16 Aligned_cols=30 Identities=37% Similarity=0.417 Sum_probs=25.7
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
.++..++|+||+|+||||+++.++..+...
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 456678999999999999999999887643
No 305
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.74 E-value=0.007 Score=49.54 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=24.2
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHH
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
..+..+.|.||.|+||||+++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456678899999999999999999887
No 306
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.74 E-value=0.018 Score=49.62 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=25.3
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
+..+.|.|++|+||||.++.+.+.+....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 34 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERG 34 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 45678999999999999999999987654
No 307
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.73 E-value=0.0069 Score=53.81 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||+|+||||+++.+++.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456788999999999999999998765
No 308
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.72 E-value=0.061 Score=47.40 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=20.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.-.++|.|.+|+|||++++.++..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 457899999999999999998753
No 309
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.69 E-value=0.019 Score=50.00 Aligned_cols=29 Identities=24% Similarity=0.249 Sum_probs=22.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
.+..+.|.|++|+||||.++.+.+.+...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 35678899999999999999999999865
No 310
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.69 E-value=0.0066 Score=53.91 Aligned_cols=29 Identities=28% Similarity=0.086 Sum_probs=24.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
.+..+.|+|++||||||+++.+++.+...
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 45578899999999999999999877643
No 311
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.67 E-value=0.0066 Score=52.64 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=22.9
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
.+..+.|.||+|+||||+++.++..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 46678899999999999999998866
No 312
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.66 E-value=0.033 Score=46.28 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.4
Q ss_pred ceEEEECCCCCchHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
-.++|.|++|+|||++++.+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999854
No 313
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.66 E-value=0.039 Score=46.23 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=20.3
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHh
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
-.++|.|++|+|||++++.+.....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4689999999999999976665443
No 314
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.66 E-value=0.0073 Score=51.82 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=23.3
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||+|+||||+++.++..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 466788999999999999999988764
No 315
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.65 E-value=0.016 Score=50.33 Aligned_cols=34 Identities=24% Similarity=0.095 Sum_probs=27.0
Q ss_pred HhcCCCceEEEECCCCCchHHHHHHHHHHHhh-hC
Q 014789 48 VTEACNNSILLLGPRGSGKIAVLELILTDLLL-EY 81 (418)
Q Consensus 48 ~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~-~~ 81 (418)
..+..+..+.|.|++|+||||+++.+.+.+.. ..
T Consensus 16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g 50 (223)
T 3ld9_A 16 TQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYG 50 (223)
T ss_dssp ---CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccC
Confidence 34445777889999999999999999999987 44
No 316
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.65 E-value=0.021 Score=52.66 Aligned_cols=30 Identities=23% Similarity=0.214 Sum_probs=25.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
++..+.|.||+|+||||+++.++..+....
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~ 157 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHG 157 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 466788999999999999999998877654
No 317
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.63 E-value=0.034 Score=51.93 Aligned_cols=48 Identities=23% Similarity=0.198 Sum_probs=33.7
Q ss_pred hhhHHHHHHHHHHHHhcC-----------CCceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 34 DSNYSKLKFLVSSSVTEA-----------CNNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 34 ~~e~~~l~~~l~~~~~~~-----------~~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
+...+.+.+.|...+... .+..+.|.||.|+||||+++.++..+....
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~ 185 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEG 185 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccC
Confidence 344555555555554321 245678999999999999999998887543
No 318
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.63 E-value=0.0039 Score=53.62 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=22.9
Q ss_pred eEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
.+.|.|++|+||||+++.+.+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999988643
No 319
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.62 E-value=0.011 Score=49.74 Aligned_cols=24 Identities=46% Similarity=0.797 Sum_probs=21.2
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
...++|.|++|+|||++++.+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998764
No 320
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.59 E-value=0.0086 Score=51.13 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.8
Q ss_pred eEEEECCCCCchHHHHHHHHHHHh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+.|+|++|+||||+++.+++.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 688999999999999999988765
No 321
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.57 E-value=0.27 Score=53.36 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=30.5
Q ss_pred hhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHH
Q 014789 33 PDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELIL 74 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~ 74 (418)
++.|.+.+...+... ..+.+..++++||+|+|||.++-..+
T Consensus 605 t~~Q~~ai~~il~~~-~~g~p~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 605 TPDQAQAINAVLSDM-CQPLAMDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp CHHHHHHHHHHHHHH-HSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-hcCCcCcEEEECCCCCCHHHHHHHHH
Confidence 677777777766553 44556689999999999998765444
No 322
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.56 E-value=0.0068 Score=51.75 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.0
Q ss_pred eEEEECCCCCchHHHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l 77 (418)
.+.|+|++|+||||+++.++. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 578999999999999999887 5
No 323
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.56 E-value=0.081 Score=43.70 Aligned_cols=24 Identities=21% Similarity=0.390 Sum_probs=20.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.-.++|.|++|+|||++++.+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998854
No 324
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.55 E-value=0.012 Score=53.43 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=22.7
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..++|+||+|+|||+++..+++.+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45678999999999999999998764
No 325
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.55 E-value=0.0076 Score=51.25 Aligned_cols=25 Identities=32% Similarity=0.243 Sum_probs=21.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.+..+.|+|++||||||+++.+++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3567889999999999999998874
No 326
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.54 E-value=0.061 Score=45.39 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=21.3
Q ss_pred CCceEEEECCCCCchHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
..-.++|.|++|+|||++++.+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 4568999999999999999998754
No 327
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.53 E-value=0.021 Score=59.30 Aligned_cols=40 Identities=25% Similarity=0.321 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 33 PDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
-+.|.+.+...+ . .+..+|.||||||||+++..++..+..
T Consensus 358 n~~Q~~Av~~~l----~---~~~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 358 NHSQVYAVKTVL----Q---RPLSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp CHHHHHHHHHHH----T---SSEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhc----c---CCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 345555555443 2 357899999999999999988887765
No 328
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=95.52 E-value=0.034 Score=55.85 Aligned_cols=65 Identities=9% Similarity=0.034 Sum_probs=37.2
Q ss_pred CCChHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHH----hhcCC-CCccChhHHHHHHHHHHhCCccee
Q 014789 309 DCSILELYILVCLKRLEVKEQNSYNFNSVMKEYKSIH----DSFQT-SDYYSRNVCLRAFEHLLQRELICF 374 (418)
Q Consensus 309 ~L~~~~~~iL~a~~~l~~~~~~~~~~~~v~~~y~~~~----~~~~~-~~~~~~~~~~~~~~~L~~~~~i~~ 374 (418)
+.+...+.+|.++.++.. .+..++...+.+.++--- +..+. ...+++..+..++..|...|++..
T Consensus 441 d~~~~~~~~l~~v~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~ 510 (591)
T 2v1x_A 441 NITEYCRDLIKILKQAEE-LNEKLTPLKLIDSWMGKGAAKLRVAGVVAPTLPREDLEKIIAHFLIQQYLKE 510 (591)
T ss_dssp ECHHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHTTCSCGGGCCTTCCCCSCCHHHHHHHHHHHHHTTSEEE
T ss_pred chHHHHHHHHHHHHHHHh-cCCcccHHHHHHHHhCCCchHHHhcCCCcCcCCHHHHHHHHHHHHHcCCcEE
Confidence 334445556666654322 234466666655443210 01111 245677888899999999999875
No 329
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.48 E-value=0.0068 Score=51.86 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=19.0
Q ss_pred eEEEECCCCCchHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILT 75 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~ 75 (418)
.+.|+|++|+||||+++.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577999999999999999876
No 330
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=95.46 E-value=0.16 Score=50.88 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=23.4
Q ss_pred hhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHH
Q 014789 33 PDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLE 71 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~ 71 (418)
++-|.+.+...+ .+.+..+++.+|+|+|||.+.-
T Consensus 45 ~~~Q~~~i~~il-----~~~~~dvlv~apTGsGKTl~~~ 78 (579)
T 3sqw_A 45 TPVQQKTIKPIL-----SSEDHDVIARAKTGTGKTFAFL 78 (579)
T ss_dssp CHHHHHHHHHHH-----CSSSEEEEEECCTTSCHHHHHH
T ss_pred CHHHHHHHHHHH-----ccCCCeEEEEcCCCcHHHHHHH
Confidence 555555554443 2346789999999999998533
No 331
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.45 E-value=0.055 Score=45.40 Aligned_cols=23 Identities=30% Similarity=0.677 Sum_probs=19.6
Q ss_pred ceEEEECCCCCchHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
-.++|.|++|+|||++++.+...
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999998743
No 332
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.45 E-value=0.046 Score=44.90 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.-.++|.|++|+|||++++.+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 347899999999999999998764
No 333
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=95.43 E-value=0.068 Score=57.06 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=30.6
Q ss_pred hhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEc
Q 014789 33 PDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLN 91 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in 91 (418)
++.|.+.+...+ .+.++++.||+|+|||.+....+..+.... ..++++.
T Consensus 41 ~~~Q~~aI~~il-------~g~~vlv~apTGsGKTlv~~~~i~~~~~~g---~~vlvl~ 89 (997)
T 4a4z_A 41 DTFQKEAVYHLE-------QGDSVFVAAHTSAGKTVVAEYAIAMAHRNM---TKTIYTS 89 (997)
T ss_dssp CHHHHHHHHHHH-------TTCEEEEECCTTSCSHHHHHHHHHHHHHTT---CEEEEEE
T ss_pred CHHHHHHHHHHH-------cCCCEEEEECCCCcHHHHHHHHHHHHHhcC---CeEEEEe
Confidence 555555554432 246899999999999987665555443332 3455554
No 334
>1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA binding, high salt, solution structure, DNA binding protein; HET: DNA; NMR {Enterobacteria phage MU} SCOP: a.49.1.1
Probab=95.42 E-value=0.012 Score=42.25 Aligned_cols=83 Identities=12% Similarity=0.123 Sum_probs=61.5
Q ss_pred cccCceEEEecCCCHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHhCChhHHHHHHHHhccccCHHHHHHHHHHHh
Q 014789 197 SRFSHRKLLFLPPSKEDMQRLLEHILSLPVDSSLPHAYAVEFNKKIKNILADGRFKEIVNTLVNLDSTVNHLLRFLFLAV 276 (418)
Q Consensus 197 sr~~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~r~~~~~l~~a~ 276 (418)
||+. ..+.+..+..+++..|++.- -+.++....++..+....|..|.+-+.++.|.
T Consensus 2 SRig-kr~~i~k~kk~DI~Aia~AW-----------------------~v~d~~~~~~l~~I~~KpGaLR~ltktLrLA~ 57 (91)
T 1f6v_A 2 SRIA-KRTAINKTKKADVKAIADAW-----------------------QINGEKELELLQQIAQKPGALRILNHSLRLAA 57 (91)
T ss_dssp CCCC-CTTCCSSCSGGGTTHHHHSS-----------------------TTSSSHHHHHHHTTSSSCSCHHHHHHHHGGGT
T ss_pred cchh-hhhhccCCCHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHccCccHHHHHHHHHHHHH
Confidence 5555 23455556666666665543 12566778888888888999999999999988
Q ss_pred hcccccCCCCChhhHHHHHhccCCCch
Q 014789 277 SYMDLESGFLSFENFKTALSNSHRQPK 303 (418)
Q Consensus 277 ~~a~~~~~~it~~~v~~a~~~~~~~~~ 303 (418)
..|......|+.+|+..|+.+...+.-
T Consensus 58 m~A~G~g~~i~~~~I~~A~~e~~~~~~ 84 (91)
T 1f6v_A 58 MTAHGKGERVNEDYLRQAFRELDLDVD 84 (91)
T ss_dssp CTTCTTSCCSSHHHHHHHHTSSCSSST
T ss_pred HHhccCCCcCCHHHHHHHHHHhccccc
Confidence 777665567999999999998876543
No 335
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.42 E-value=0.011 Score=53.89 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=24.1
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHH
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
+++..+.|+||+|+||||+++.++..+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 457788899999999999999999877
No 336
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.41 E-value=0.042 Score=53.29 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=24.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
+..+.|.|+.|+||||+++.++..+....
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~ 321 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQG 321 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcC
Confidence 55788999999999999999998876544
No 337
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.37 E-value=0.022 Score=52.17 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=24.5
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
..+..+-|.||+|+||||+++.++..+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34567779999999999999999888764
No 338
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.35 E-value=0.008 Score=51.48 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.3
Q ss_pred CceEEEECCCCCchHHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
+..+.|.|++|+||||+++.+...+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4567899999999999999887754
No 339
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.33 E-value=0.011 Score=50.18 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.2
Q ss_pred CceEEEECCCCCchHHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
...+.|+|++||||||+++.+.+.+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456799999999999999998864
No 340
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.32 E-value=0.22 Score=41.53 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.0
Q ss_pred ceEEEECCCCCchHHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
-.++|.|++|+|||++++.+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 468999999999999999988653
No 341
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.30 E-value=0.0069 Score=55.81 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=23.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..++|.||+|+|||+++..+++.+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 45789999999999999999998764
No 342
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.28 E-value=0.01 Score=54.15 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.5
Q ss_pred ceEEEECCCCCchHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
..++|.|+||+||||+++.+++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36889999999999999998875
No 343
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.28 E-value=0.2 Score=46.95 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=17.5
Q ss_pred CceEEEECCCCCchHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELIL 74 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~ 74 (418)
+.++++.+|+|+|||...-..+
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHH
Confidence 3679999999999998764443
No 344
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.28 E-value=0.011 Score=53.58 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=21.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
+..+.|+|++|+||||+++.+.+.+...
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~ 32 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRRE 32 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 4467899999999999999999887654
No 345
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.27 E-value=0.012 Score=55.54 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=26.0
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
..+..++|+||+|+||||+++.++..+...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~ 163 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQT 163 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcC
Confidence 456688999999999999999999987754
No 346
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.24 E-value=0.0076 Score=52.67 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=16.5
Q ss_pred CCceEEEECCCCCchHHHHHHHH-HHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELIL-TDL 77 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~-~~l 77 (418)
.+..+.|.||+|+||||+++.++ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35678899999999999999998 654
No 347
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.21 E-value=0.0097 Score=54.18 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=22.4
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..++|.||+|+|||+++..+++.+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 34678999999999999999998764
No 348
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=95.20 E-value=0.097 Score=56.49 Aligned_cols=98 Identities=16% Similarity=0.175 Sum_probs=49.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh-cc-cccCCChH-----
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-LL-FSKMASFD----- 124 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-~~-~~~~~~~~----- 124 (418)
.+.+++++||+|+|||.+....+....... ..++++... ..+..++.+.+....+ .. ..++.+..
T Consensus 198 ~g~dvLV~ApTGSGKTlva~l~i~~~l~~g---~rvlvl~Pt-----raLa~Q~~~~l~~~~~~VglltGd~~~~~~~~I 269 (1108)
T 3l9o_A 198 RGESVLVSAHTSAGKTVVAEYAIAQSLKNK---QRVIYTSPI-----KALSNQKYRELLAEFGDVGLMTGDITINPDAGC 269 (1108)
T ss_dssp TTCCEEEECCSSSHHHHHHHHHHHHHHHTT---CEEEEEESS-----HHHHHHHHHHHHHHTSSEEEECSSCBCCCSCSE
T ss_pred cCCCEEEECCCCCChHHHHHHHHHHHHhcC---CeEEEEcCc-----HHHHHHHHHHHHHHhCCccEEeCccccCCCCCE
Confidence 356899999999999998766555443322 345555421 2233344444432211 00 00110000
Q ss_pred --hHHHHHHHHHhhcCC-CceEEEEEecchhhhhhc
Q 014789 125 --DNSQFMIEMLRECGL-AHKTIIFVLDEFDLFAQG 157 (418)
Q Consensus 125 --~~~~~l~~~l~~~~~-~~~~~viilDEid~l~~~ 157 (418)
..-..+...+..... ....-+|||||+|.+...
T Consensus 270 lV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~ 305 (1108)
T 3l9o_A 270 LVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDK 305 (1108)
T ss_dssp EEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSH
T ss_pred EEeChHHHHHHHHcCccccccCCEEEEhhhhhcccc
Confidence 011223333332211 225679999999999764
No 349
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.19 E-value=0.19 Score=45.88 Aligned_cols=36 Identities=14% Similarity=0.332 Sum_probs=24.3
Q ss_pred hhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHH
Q 014789 33 PDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILT 75 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~ 75 (418)
++-|.+.+...+ .+.++++.+|+|+|||.+.-..+-
T Consensus 18 ~~~Q~~~i~~i~-------~~~~~lv~~~TGsGKT~~~~~~~~ 53 (337)
T 2z0m_A 18 TEVQSKTIPLML-------QGKNVVVRAKTGSGKTAAYAIPIL 53 (337)
T ss_dssp CHHHHHHHHHHH-------TTCCEEEECCTTSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHh-------cCCCEEEEcCCCCcHHHHHHHHHH
Confidence 455555554433 235799999999999987655443
No 350
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.19 E-value=0.092 Score=50.99 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=29.1
Q ss_pred ChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHH
Q 014789 32 SPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 32 gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
-++.|.+.+...+ . ...++|.||+|+|||.++-.++..+
T Consensus 94 l~~~Q~~ai~~i~----~---~~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 94 LRDYQEKALERWL----V---DKRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp BCHHHHHHHHHHT----T---TTEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH----h---cCCEEEEeCCCCCHHHHHHHHHHHc
Confidence 4677777766543 2 2469999999999999987777665
No 351
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.18 E-value=0.014 Score=51.07 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=23.4
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.|++|+||||+++.+++.+.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456788999999999999999988764
No 352
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.15 E-value=0.042 Score=51.36 Aligned_cols=40 Identities=18% Similarity=0.300 Sum_probs=29.4
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEc
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLN 91 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in 91 (418)
+....+.|+|+||+||||++..++..+.... .++.++..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g-~kV~vi~~D 116 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERG-HRVAVLAVD 116 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTT-CCEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCC-CceEEEecC
Confidence 3456788999999999999999998876543 234444443
No 353
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.14 E-value=0.039 Score=47.49 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=25.4
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
+.-+.|.|++|+||||.++.+.+.+....
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 45688999999999999999999988654
No 354
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.14 E-value=0.035 Score=48.60 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=25.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
+..+.|.|++|+||||.++.+.+.+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~ 55 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNG 55 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 56788999999999999999999987654
No 355
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.13 E-value=0.023 Score=59.16 Aligned_cols=39 Identities=23% Similarity=0.339 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 34 DSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 34 ~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
+.|.+.+...+ . .+..+|.||||||||+++..++..+..
T Consensus 363 ~~Q~~Av~~~l----~---~~~~lI~GppGTGKT~~i~~~i~~l~~ 401 (802)
T 2xzl_A 363 SSQSNAVSHVL----Q---RPLSLIQGPPGTGKTVTSATIVYHLSK 401 (802)
T ss_dssp HHHHHHHHHHT----T---CSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh----c---CCCEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45555555443 2 456899999999999998888776654
No 356
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.13 E-value=0.01 Score=50.13 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=22.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..++|.||+|+|||+++..+++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 56689999999999999999887654
No 357
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.12 E-value=0.019 Score=56.20 Aligned_cols=29 Identities=17% Similarity=0.086 Sum_probs=26.0
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
..+..++|.|.+||||||+++.+++.|..
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999975
No 358
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.11 Score=55.44 Aligned_cols=97 Identities=18% Similarity=0.225 Sum_probs=49.9
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh-c-ccccCCChH------
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ-L-LFSKMASFD------ 124 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~-~-~~~~~~~~~------ 124 (418)
+.++++.+|+|+|||.++...+....... ..++++... ..+..+....+....+ . ...++.+..
T Consensus 101 g~~vLV~apTGSGKTlva~lai~~~l~~g---~rvL~l~Pt-----kaLa~Q~~~~l~~~~~~vglltGd~~~~~~~~Iv 172 (1010)
T 2xgj_A 101 GESVLVSAHTSAGKTVVAEYAIAQSLKNK---QRVIYTSPI-----KALSNQKYRELLAEFGDVGLMTGDITINPDAGCL 172 (1010)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHTT---CEEEEEESS-----HHHHHHHHHHHHHHHSCEEEECSSCEECTTCSEE
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHhccC---CeEEEECCh-----HHHHHHHHHHHHHHhCCEEEEeCCCccCCCCCEE
Confidence 35799999999999998765544433222 455665431 2233444444432211 0 001110000
Q ss_pred -hHHHHHHHHHhhc-CCCceEEEEEecchhhhhhc
Q 014789 125 -DNSQFMIEMLREC-GLAHKTIIFVLDEFDLFAQG 157 (418)
Q Consensus 125 -~~~~~l~~~l~~~-~~~~~~~viilDEid~l~~~ 157 (418)
-..+.+...+... ......-+|||||+|.+...
T Consensus 173 V~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~ 207 (1010)
T 2xgj_A 173 VMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDK 207 (1010)
T ss_dssp EEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCT
T ss_pred EEcHHHHHHHHHcCcchhhcCCEEEEechhhhccc
Confidence 0112233333322 22346789999999999765
No 359
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=95.12 E-value=0.041 Score=55.50 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=25.1
Q ss_pred CCceEEEECCCCCchHHH-HHHHHHHHhhhCCCCeEEEEEc
Q 014789 52 CNNSILLLGPRGSGKIAV-LELILTDLLLEYPDTISVIKLN 91 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l-~~~~~~~l~~~~~~~~~~v~in 91 (418)
.+..+++.+|+|+|||+. +-.+++.+.... ..++.+.
T Consensus 185 ~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~---~~vLvl~ 222 (618)
T 2whx_A 185 KKRLTIMDLHPGAGKTKRILPSIVREALKRR---LRTLILA 222 (618)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHHTT---CCEEEEE
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHHHHhCC---CeEEEEc
Confidence 367899999999999997 455665554432 3445443
No 360
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.06 E-value=0.011 Score=52.28 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=22.8
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++..+.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 466788999999999999999876554
No 361
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.05 E-value=0.015 Score=52.38 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=24.1
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
.+..+.|+||+|+||||++..++..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4678899999999999999999986653
No 362
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.04 E-value=0.016 Score=51.11 Aligned_cols=27 Identities=33% Similarity=0.160 Sum_probs=23.0
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+-|.||.|+||||+++.++..+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455677999999999999999988764
No 363
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.02 E-value=0.029 Score=55.64 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=30.5
Q ss_pred HHHHHHHHH--hcCCCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 40 LKFLVSSSV--TEACNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 40 l~~~l~~~~--~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
+...++... ....+..++|+|++|+||||+++.+.+.+...
T Consensus 357 V~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~~ 399 (546)
T 2gks_A 357 VAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQAR 399 (546)
T ss_dssp HHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhhc
Confidence 344444444 33346678899999999999999999988754
No 364
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.02 E-value=0.015 Score=50.11 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.2
Q ss_pred CceEEEECCCCCchHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILT 75 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~ 75 (418)
+..+.|+|++|+||||+++.+.+
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999998876
No 365
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=95.00 E-value=0.041 Score=53.11 Aligned_cols=28 Identities=21% Similarity=0.139 Sum_probs=21.0
Q ss_pred CCceEEEECCCCCchHHHH-HHHHHHHhh
Q 014789 52 CNNSILLLGPRGSGKIAVL-ELILTDLLL 79 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~-~~~~~~l~~ 79 (418)
.+.++++.||+|+|||... -.+++.+..
T Consensus 7 ~g~~vlv~a~TGSGKT~~~l~~~l~~~~~ 35 (440)
T 1yks_A 7 KGMTTVLDFHPGAGKTRRFLPQILAECAR 35 (440)
T ss_dssp TTCEEEECCCTTSSTTTTHHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 3678999999999999974 445554443
No 366
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.98 E-value=0.023 Score=56.25 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=23.1
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
.+..+.|.||.|+||||+++.++..+..
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p 320 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITA 320 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3567789999999999999998876543
No 367
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.98 E-value=0.04 Score=51.53 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEc
Q 014789 42 FLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLN 91 (418)
Q Consensus 42 ~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in 91 (418)
+.+.....-+.+..++|.|++|+|||+++..+++.....++. +.+|++-
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~d-v~~V~~l 212 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPD-TIRIILL 212 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTT-SEEEEEE
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCC-eEEEEEE
Confidence 334444555678999999999999999999999987765433 4444443
No 368
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.98 E-value=0.053 Score=49.86 Aligned_cols=29 Identities=24% Similarity=0.240 Sum_probs=24.9
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
+..+.|+|++|+||||++..++..+....
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g 133 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELG 133 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 45688999999999999999998887643
No 369
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.96 E-value=0.013 Score=51.32 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++..+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 466788999999999999998876543
No 370
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.96 E-value=0.014 Score=53.84 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.3
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHh
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
..+.|.||+|+|||+++..+++.+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3688999999999999999998875
No 371
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.95 E-value=0.018 Score=57.75 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=22.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
++..+-|.||.|+||||+++.++..+.
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 466788999999999999998876543
No 372
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.91 E-value=0.14 Score=53.02 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHH
Q 014789 33 PDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
++.|.+.+...+.. +..+.+.++++.||+|+|||.++-..+-.
T Consensus 370 t~~Q~~ai~~I~~~-l~~~~~~~~Ll~a~TGSGKTlvall~il~ 412 (780)
T 1gm5_A 370 TNAQKRAHQEIRND-MISEKPMNRLLQGDVGSGKTVVAQLAILD 412 (780)
T ss_dssp CHHHHHHHHHHHHH-HHSSSCCCCEEECCSSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh-ccccCCCcEEEEcCCCCCHHHHHHHHHHH
Confidence 44555555555544 34555678999999999999887665443
No 373
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.82 E-value=0.018 Score=49.68 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.9
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHh
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
..+.|+|++|+|||++++.+++.+.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4688999999999999999888764
No 374
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=94.79 E-value=0.35 Score=47.70 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=26.2
Q ss_pred hhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHH
Q 014789 33 PDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
|+-|.+.+...+ . +.++++.+|+|+|||...-..+...
T Consensus 9 ~~~Q~~~i~~~~----~---~~~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 9 RSYQIELAQPAI----N---GKNALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp CHHHHHHHHHHH----T---TCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH----c---CCCEEEEcCCCChHHHHHHHHHHHH
Confidence 555666555543 2 3579999999999998866655443
No 375
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=94.79 E-value=0.27 Score=47.13 Aligned_cols=26 Identities=35% Similarity=0.508 Sum_probs=18.9
Q ss_pred CceEEEECCCCCchHHHHH-HHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLE-LILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~-~~~~~l~ 78 (418)
+..+++.+|+|+|||...- .++..+.
T Consensus 93 g~d~i~~a~TGsGKT~a~~lpil~~l~ 119 (434)
T 2db3_A 93 GRDLMACAQTGSGKTAAFLLPILSKLL 119 (434)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCchHHHHHHHHHHHH
Confidence 5689999999999998533 3444443
No 376
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=94.78 E-value=0.059 Score=60.66 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=26.8
Q ss_pred CCceEEEECCCCCchHHHHHHHH-HHHhhhCCCCeEEEEEcc
Q 014789 52 CNNSILLLGPRGSGKIAVLELIL-TDLLLEYPDTISVIKLNG 92 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~-~~l~~~~~~~~~~v~in~ 92 (418)
...++++.+|+|+|||.++...+ +.+.... ...++|+..
T Consensus 941 ~~~nvlv~APTGSGKTliaelail~~l~~~~--~~kavyi~P 980 (1724)
T 4f92_B 941 SDDNVFVGAPTGSGKTICAEFAILRMLLQSS--EGRCVYITP 980 (1724)
T ss_dssp CCSCEEEECCTTSCCHHHHHHHHHHHHHHCT--TCCEEEECS
T ss_pred CCCcEEEEeCCCCCchHHHHHHHHHHHHhCC--CCEEEEEcC
Confidence 35689999999999999887654 3443322 145677753
No 377
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.77 E-value=0.021 Score=49.06 Aligned_cols=26 Identities=42% Similarity=0.703 Sum_probs=22.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
....++|.|++|+|||++++.+....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 46789999999999999999988653
No 378
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.76 E-value=0.016 Score=50.86 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=22.9
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
++..+.|.||.|+||||+++.++..+.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 466788999999999999998876554
No 379
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.75 E-value=0.071 Score=56.02 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=20.3
Q ss_pred CceEEEECCCCCchHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILT 75 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~ 75 (418)
+..+.|+||.|+||||+++.++.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 56788999999999999998764
No 380
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.74 E-value=0.025 Score=55.62 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=26.3
Q ss_pred HHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 42 FLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 42 ~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
..+...+. .+.+++|+||+|+||||+++.++..+.
T Consensus 251 ~~l~~~v~--~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 251 AYLWLAIE--HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HHHHHHHH--TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHHh--CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 33444444 345699999999999999999887664
No 381
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.73 E-value=0.019 Score=46.42 Aligned_cols=23 Identities=17% Similarity=0.494 Sum_probs=20.2
Q ss_pred ceEEEECCCCCchHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
..+++.|++|+|||++++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998864
No 382
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.68 E-value=0.014 Score=50.76 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=21.8
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
.+..+.|.||.|+||||+++.++..+
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999887554
No 383
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=94.68 E-value=0.58 Score=46.02 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=26.3
Q ss_pred hhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHH
Q 014789 33 PDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 33 r~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
|+-|.+.+...+ .+.++++.+|+|+|||...-..+...
T Consensus 6 ~~~Q~~~i~~~~-------~~~~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 6 RNYQLELALPAK-------KGKNTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp CHHHHHHHHHHH-------TTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHh-------CCCCEEEEeCCCChHHHHHHHHHHHH
Confidence 555666555443 23579999999999998866655443
No 384
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.68 E-value=0.032 Score=55.94 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=28.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEc
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLN 91 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in 91 (418)
.+..++|+|.+|+||||+++.+.+.+.... ..++.++
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G---~~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHG---IPCYTLD 87 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTT---CCEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcC---CeEEEec
Confidence 456789999999999999999999886433 3345554
No 385
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.67 E-value=0.025 Score=56.42 Aligned_cols=29 Identities=28% Similarity=0.247 Sum_probs=25.2
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
.+..++|+|++|+||||+++.+.+.+...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~ 423 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQ 423 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhccc
Confidence 45678899999999999999999998753
No 386
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.66 E-value=0.019 Score=54.11 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=22.4
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHh
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
..++|.||+|+|||+++..+++.+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4578999999999999999999875
No 387
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.65 E-value=0.019 Score=51.84 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=20.0
Q ss_pred CceEEEECCCCCchHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILT 75 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~ 75 (418)
+..+.|+|++||||||+++.+.+
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 44688999999999999999883
No 388
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.63 E-value=0.022 Score=56.52 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=26.0
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
..+..+.|.|++|+||||+++.++..+...
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 356788999999999999999999988743
No 389
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.63 E-value=0.018 Score=49.45 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=23.3
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
.+..+.|.||.|+||||+++.++.. ...
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~ 48 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ 48 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CCc
Confidence 3567889999999999999998877 543
No 390
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.63 E-value=0.02 Score=48.84 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=21.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
...++|.|++|+|||++++.+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999998753
No 391
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.60 E-value=0.028 Score=52.67 Aligned_cols=36 Identities=19% Similarity=0.465 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 42 FLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 42 ~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
..+.-.+. .+..+.|.||+|+||||+++.++..+..
T Consensus 166 ~~l~~~i~--~G~~i~ivG~sGsGKSTll~~l~~~~~~ 201 (361)
T 2gza_A 166 SFLRRAVQ--LERVIVVAGETGSGKTTLMKALMQEIPF 201 (361)
T ss_dssp HHHHHHHH--TTCCEEEEESSSSCHHHHHHHHHTTSCT
T ss_pred HHHHHHHh--cCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 45554444 4568999999999999999999876653
No 392
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.58 E-value=0.096 Score=48.79 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=24.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
+..+.|.|+||+||||+++.++..+...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 5678899999999999999999876544
No 393
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.58 E-value=0.04 Score=52.46 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.5
Q ss_pred CceEEEECCCCCchHHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
+..+.|.||+|+||||+++.++...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 4578899999999999999988744
No 394
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.57 E-value=0.019 Score=51.21 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=22.4
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++..+.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 466788999999999999998876543
No 395
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.52 E-value=0.098 Score=50.45 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=29.0
Q ss_pred CCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 30 SDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+.-|+.|.+.+...+ .+ ++++.+|+|+|||..+-.++....
T Consensus 8 ~~l~~~Q~~~i~~~~----~~----~~ll~~~tG~GKT~~~~~~~~~~~ 48 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCK----ET----NCLIVLPTGLGKTLIAMMIAEYRL 48 (494)
T ss_dssp HCCCHHHHHHHHHGG----GS----CEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHh----hC----CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 334666666655432 22 799999999999998887766553
No 396
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.51 E-value=0.021 Score=47.59 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=21.9
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
++..+|+||.|+|||++++++.-.+.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 44778999999999999999877654
No 397
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.50 E-value=0.034 Score=54.83 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=24.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
+..++++|.||+||||+++.+++.+....
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 45788999999999999999999886543
No 398
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.46 E-value=0.16 Score=53.61 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.5
Q ss_pred CceEEEECCCCCchHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILT 75 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~ 75 (418)
+..+.|.||.|+||||+++.++.
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 55678999999999999999984
No 399
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.46 E-value=0.02 Score=49.44 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=22.4
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
++..+.|.||.|+||||+++.++..+.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 456788999999999999998876543
No 400
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.46 E-value=0.024 Score=46.08 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=20.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.-.+++.|++|+|||++++.+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999998864
No 401
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.45 E-value=0.026 Score=50.56 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.9
Q ss_pred CCceEEEECCCCCchHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.+..+.|.||.|+||||+++.++..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4667889999999999999988875
No 402
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.45 E-value=0.024 Score=48.02 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=19.8
Q ss_pred eEEEECCCCCchHHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.+.|.|++|+||||+++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 403
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.43 E-value=0.058 Score=50.02 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=25.2
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
..+..+.|.|+||+||||+++.++..+...
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~ 82 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAA 82 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhC
Confidence 456678899999999999999998877543
No 404
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.41 E-value=0.022 Score=50.80 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++..+.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 466788999999999999998876543
No 405
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.41 E-value=0.022 Score=49.98 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=23.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
+..+.|.|++|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45688999999999999999998875
No 406
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.39 E-value=0.021 Score=48.04 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=20.7
Q ss_pred ceEEEECCCCCchHHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
-.+.|.|++|+||||+++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 357899999999999999988654
No 407
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.38 E-value=0.022 Score=50.74 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
.+..+.|.||.|+||||+++.++..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 46678899999999999999987654
No 408
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.38 E-value=0.024 Score=50.86 Aligned_cols=24 Identities=21% Similarity=0.548 Sum_probs=21.4
Q ss_pred eEEEECCCCCchHHHHHHHHHHHh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
++.|.||+|+||||+++.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999988764
No 409
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.36 E-value=0.02 Score=49.91 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=22.8
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++..+.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 466788999999999999998876554
No 410
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.35 E-value=0.044 Score=45.70 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=23.1
Q ss_pred hcCCCceEEEECCCCCchHHHHHHHHH
Q 014789 49 TEACNNSILLLGPRGSGKIAVLELILT 75 (418)
Q Consensus 49 ~~~~~~~ill~G~~GtGKT~l~~~~~~ 75 (418)
.......+++.|++|+|||++++.+..
T Consensus 12 ~~~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 12 FNHQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp HTTSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhc
Confidence 345677899999999999999999874
No 411
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.35 E-value=0.024 Score=50.18 Aligned_cols=25 Identities=28% Similarity=0.512 Sum_probs=21.8
Q ss_pred CCceEEEECCCCCchHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.+..+.|.||.|+||||+++.++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4667889999999999999988874
No 412
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.34 E-value=0.027 Score=46.35 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=20.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
...+++.|++|+|||++++.+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999998754
No 413
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.34 E-value=0.027 Score=45.87 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=19.8
Q ss_pred eEEEECCCCCchHHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.+++.|++|+|||++++.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998754
No 414
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.34 E-value=0.027 Score=49.49 Aligned_cols=25 Identities=44% Similarity=0.642 Sum_probs=21.3
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHh
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
..+.|.||.|+||||+++.++..+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5678999999999999998876543
No 415
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.34 E-value=0.02 Score=50.91 Aligned_cols=27 Identities=33% Similarity=0.569 Sum_probs=22.4
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++..+.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 466788999999999999998876543
No 416
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.34 E-value=0.024 Score=50.42 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=22.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
++..+.|.||.|+||||+++.++..+.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 466788999999999999998876543
No 417
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.33 E-value=0.024 Score=47.60 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=20.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
+...+++.|++|+|||++++.+...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999998753
No 418
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.32 E-value=0.021 Score=50.53 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++..+.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 466788999999999999998876543
No 419
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.31 E-value=0.016 Score=48.13 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=27.4
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEcccc
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGLL 94 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~ 94 (418)
..+.|.|++|+||||+++.++..+.... .+.-.+.+++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g-~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERG-LRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTT-CCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcC-CceEEEEEcCcc
Confidence 3577999999999999999999887542 123456666544
No 420
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.31 E-value=0.023 Score=50.92 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=22.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++..+.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 466788999999999999998876543
No 421
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.30 E-value=0.031 Score=48.24 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=24.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLL 79 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~ 79 (418)
.+..+.+.|++|+||||.++.+.+.+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3567889999999999999999998875
No 422
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.30 E-value=0.025 Score=52.76 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=22.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++..+.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 466788999999999999998876543
No 423
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.29 E-value=0.032 Score=45.92 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.3
Q ss_pred CCceEEEECCCCCchHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILT 75 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~ 75 (418)
....++|.|++|+|||++++.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999875
No 424
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.28 E-value=0.082 Score=44.84 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=23.3
Q ss_pred EEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 56 ILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 56 ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
|.|.|+-|+||||.++.+.+.|....
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g 28 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 56889999999999999999998765
No 425
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.28 E-value=0.086 Score=47.19 Aligned_cols=58 Identities=10% Similarity=0.194 Sum_probs=41.0
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEECC-CCCchHHHHHHHHHHHhhhCCCCeEEEEEcccc
Q 014789 34 DSNYSKLKFLVSSSVTEACNNSILLLGP-RGSGKIAVLELILTDLLLEYPDTISVIKLNGLL 94 (418)
Q Consensus 34 ~~e~~~l~~~l~~~~~~~~~~~ill~G~-~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~ 94 (418)
.+.+..|...+...........+.|+|+ +|+|||+++-.++..+.... .+++-|++..
T Consensus 63 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G---~rVLLID~D~ 121 (271)
T 3bfv_A 63 SEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAG---YKTLIVDGDM 121 (271)
T ss_dssp HHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTT---CCEEEEECCS
T ss_pred HHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCC---CeEEEEeCCC
Confidence 3567777777766544455677888875 89999999999999888643 3455566543
No 426
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.27 E-value=0.021 Score=62.93 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=22.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
++..+-|+|++|+||||+++.+.+-+.
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 466788999999999999998876544
No 427
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.27 E-value=0.026 Score=46.48 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.0
Q ss_pred CCceEEEECCCCCchHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.+..++|.|++|+|||+++..+.+.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3668999999999999999988874
No 428
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.27 E-value=0.029 Score=45.72 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=20.8
Q ss_pred ceEEEECCCCCchHHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
-.+++.|++|+|||++++.+...-
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999987653
No 429
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=94.26 E-value=0.12 Score=52.66 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=25.2
Q ss_pred CCceEEEECCCCCchHHH-HHHHHHHHhhhCCCCeEEEEEc
Q 014789 52 CNNSILLLGPRGSGKIAV-LELILTDLLLEYPDTISVIKLN 91 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l-~~~~~~~l~~~~~~~~~~v~in 91 (418)
.+.++++.||+|+|||+. +-.+++.+.... ..++.+.
T Consensus 240 ~g~dvlv~apTGSGKTl~~ll~il~~l~~~~---~~~lila 277 (673)
T 2wv9_A 240 KRQLTVLDLHPGAGKTRRILPQIIKDAIQKR---LRTAVLA 277 (673)
T ss_dssp TTCEEEECCCTTTTTTTTHHHHHHHHHHHTT---CCEEEEE
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC---CcEEEEc
Confidence 467899999999999997 455555544332 3445443
No 430
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.25 E-value=0.027 Score=46.19 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.1
Q ss_pred ceEEEECCCCCchHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
-.++|.|++|+|||++++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999998743
No 431
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.25 E-value=0.022 Score=50.13 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=22.4
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++..+.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 466788999999999999998876543
No 432
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.25 E-value=0.025 Score=46.23 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.5
Q ss_pred ceEEEECCCCCchHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILT 75 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~ 75 (418)
..+.|.|++|+|||++++.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3588999999999999999875
No 433
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.21 E-value=0.03 Score=46.24 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.1
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
...+++.|++|+|||++++.+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999998764
No 434
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.19 E-value=0.03 Score=45.62 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.4
Q ss_pred ceEEEECCCCCchHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
-.+++.|++|+|||++++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998754
No 435
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.19 E-value=0.023 Score=50.22 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++..+.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 466788999999999999998876543
No 436
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.18 E-value=0.026 Score=46.65 Aligned_cols=25 Identities=16% Similarity=0.330 Sum_probs=21.0
Q ss_pred CCceEEEECCCCCchHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.+..+.|.|++|+|||++++.+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999998754
No 437
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.15 E-value=0.023 Score=47.48 Aligned_cols=21 Identities=29% Similarity=0.730 Sum_probs=19.2
Q ss_pred eEEEECCCCCchHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILT 75 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~ 75 (418)
.++|.|++|+|||++++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999875
No 438
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=94.13 E-value=0.097 Score=47.60 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHHHHhcCCCceEEEECC-CCCchHHHHHHHHHHHhhhCCCCeEEEEEcccc
Q 014789 34 DSNYSKLKFLVSSSVTEACNNSILLLGP-RGSGKIAVLELILTDLLLEYPDTISVIKLNGLL 94 (418)
Q Consensus 34 ~~e~~~l~~~l~~~~~~~~~~~ill~G~-~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~~ 94 (418)
.+.+..|...+........+..+.|+|+ +|+|||+++..++..+.... .+++-|++..
T Consensus 85 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G---~rVLLID~D~ 143 (299)
T 3cio_A 85 VEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSD---QKVLFIDADL 143 (299)
T ss_dssp HHHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTT---CCEEEEECCT
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCC---CcEEEEECCC
Confidence 3566667666665544555677888876 79999999999999888653 3455556543
No 439
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.12 E-value=0.027 Score=50.37 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.1
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
.+..+.|.||.|+||||+++.++..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 46678899999999999999887654
No 440
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.12 E-value=0.028 Score=45.75 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=20.0
Q ss_pred ceEEEECCCCCchHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
-.+++.|++|+|||++++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36899999999999999998753
No 441
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.11 E-value=0.031 Score=52.16 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=22.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++.-+.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 466788999999999999998876543
No 442
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.11 E-value=0.032 Score=52.16 Aligned_cols=27 Identities=37% Similarity=0.416 Sum_probs=22.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++.-+.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 466788999999999999998876543
No 443
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.10 E-value=0.025 Score=46.88 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.1
Q ss_pred CCCceEEEECCCCCchHHHHHHHH
Q 014789 51 ACNNSILLLGPRGSGKIAVLELIL 74 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~ 74 (418)
.....+++.|++|+|||++++.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 456789999999999999998876
No 444
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.09 E-value=0.032 Score=52.41 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=22.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++.-+.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 466788999999999999998876543
No 445
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=94.05 E-value=0.036 Score=56.37 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=16.1
Q ss_pred CCceEEEECCCCCchHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVL 70 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~ 70 (418)
.+..+++.||+|+|||+.+
T Consensus 154 ~rk~vlv~apTGSGKT~~a 172 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHA 172 (677)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4568999999999999943
No 446
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.04 E-value=0.033 Score=44.98 Aligned_cols=26 Identities=38% Similarity=0.645 Sum_probs=21.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHh
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
++..+|+||.|+|||+++.++.-.+.
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~ 48 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLY 48 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 45678999999999999999876553
No 447
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.03 E-value=0.032 Score=45.48 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=19.7
Q ss_pred ceEEEECCCCCchHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILT 75 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~ 75 (418)
-.+++.|++|+|||++++.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999875
No 448
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.02 E-value=0.03 Score=52.22 Aligned_cols=27 Identities=41% Similarity=0.500 Sum_probs=22.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++..+.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 466788999999999999998876543
No 449
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.02 E-value=0.049 Score=51.63 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=25.1
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLE 80 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~ 80 (418)
...+++|.|++|+|||++++.++..+...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~ 62 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQ 62 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 46789999999999999999999877643
No 450
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.01 E-value=0.026 Score=50.08 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=22.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++..+.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 466788999999999999998876554
No 451
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.01 E-value=0.044 Score=60.35 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=22.8
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
++..+.|.||+|+||||+++.++..+.
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccc
Confidence 466788999999999999998876554
No 452
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.01 E-value=0.038 Score=45.09 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=20.9
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
...+++.|++|+|||++++.+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999998653
No 453
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.00 E-value=0.026 Score=50.81 Aligned_cols=27 Identities=22% Similarity=0.359 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++..+.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 466788999999999999998876543
No 454
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=94.00 E-value=0.75 Score=43.38 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=18.2
Q ss_pred CceEEEECCCCCchHHHH-HHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVL-ELILTDL 77 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~-~~~~~~l 77 (418)
+.++++.+|+|+|||.+. -.++..+
T Consensus 52 ~~~~lv~a~TGsGKT~~~~~~~l~~~ 77 (417)
T 2i4i_A 52 KRDLMACAQTGSGKTAAFLLPILSQI 77 (417)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467999999999999743 3344444
No 455
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.99 E-value=0.035 Score=52.13 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++.-+.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 466788999999999999998876543
No 456
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.99 E-value=0.035 Score=45.16 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.3
Q ss_pred ceEEEECCCCCchHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
-.+++.|++|+|||++++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998863
No 457
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=93.99 E-value=0.049 Score=53.03 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=25.4
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
.+..+++.|.||+||||+++.+++.+....
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 355789999999999999999999887443
No 458
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.97 E-value=0.038 Score=51.11 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccc
Q 014789 40 LKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGL 93 (418)
Q Consensus 40 l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~ 93 (418)
+...+.-.+.. +..+.|.||+|+||||+++.++..+.... ..+.+++.
T Consensus 160 ~l~~l~~~i~~--g~~v~i~G~~GsGKTTll~~l~g~~~~~~----g~i~i~~~ 207 (330)
T 2pt7_A 160 AISAIKDGIAI--GKNVIVCGGTGSGKTTYIKSIMEFIPKEE----RIISIEDT 207 (330)
T ss_dssp HHHHHHHHHHH--TCCEEEEESTTSCHHHHHHHGGGGSCTTS----CEEEEESS
T ss_pred HHhhhhhhccC--CCEEEEECCCCCCHHHHHHHHhCCCcCCC----cEEEECCe
Confidence 34445444443 55899999999999999999887654332 23555553
No 459
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.97 E-value=0.033 Score=45.41 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=18.8
Q ss_pred eEEEECCCCCchHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILT 75 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~ 75 (418)
.++|.|++|+|||++++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999999863
No 460
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.97 E-value=0.031 Score=48.62 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.0
Q ss_pred eEEEECCCCCchHHHHHHHHHHHh
Q 014789 55 SILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+-|.|+||+||||.++.+++.+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ceeeECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999988764
No 461
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.91 E-value=0.013 Score=53.56 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=22.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++..+.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 466788999999999999998876543
No 462
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.87 E-value=0.084 Score=51.06 Aligned_cols=103 Identities=16% Similarity=0.161 Sum_probs=57.0
Q ss_pred HHHHHhcCCCceEEEECCCCCchHHH-HHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh----cccc
Q 014789 44 VSSSVTEACNNSILLLGPRGSGKIAV-LELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ----LLFS 118 (418)
Q Consensus 44 l~~~~~~~~~~~ill~G~~GtGKT~l-~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~----~~~~ 118 (418)
+...+.-+.+..+.|.|++|+|||++ +..++++.. .++.+|++-+-.-. .-..++.+.+..... ..+.
T Consensus 153 ID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~----~dv~~V~~~iGeR~---~Ev~~~~~~~~~~g~m~~tvvV~ 225 (502)
T 2qe7_A 153 IDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKG----QDVICIYVAIGQKQ---STVAGVVETLRQHDALDYTIVVT 225 (502)
T ss_dssp HHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGS----CSEEEEEEEESCCH---HHHHHHHHHHHHTTCSTTEEEEE
T ss_pred cccccccccCCEEEEECCCCCCchHHHHHHHHHhhc----CCcEEEEEECCCcc---hHHHHHHHHHhhCCCcceeEEEE
Confidence 33444556788999999999999999 556666542 23555665543322 224455555543221 1111
Q ss_pred cCC--ChHhH------HHHHHHHHhhcCCCceEEEEEecchhhhhh
Q 014789 119 KMA--SFDDN------SQFMIEMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 119 ~~~--~~~~~------~~~l~~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
... +.... --.+-+++.. .++.++|++|++-.+..
T Consensus 226 atad~p~~~r~~a~~~a~tiAEyfrd---~G~dVLl~~Dsltr~A~ 268 (502)
T 2qe7_A 226 ASASEPAPLLYLAPYAGCAMGEYFMY---KGKHALVVYDDLSKQAA 268 (502)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHT---TTCEEEEEEECHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHH---cCCcEEEEEecHHHHHH
Confidence 111 11111 1123445554 36899999999876654
No 463
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.87 E-value=0.033 Score=47.38 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=21.4
Q ss_pred hcCCCceEEEECCCCCchHHHHHHHHHH
Q 014789 49 TEACNNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 49 ~~~~~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.....-.+++.|++|+|||++++.+...
T Consensus 26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ----CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred hcCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3445678999999999999999988753
No 464
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.86 E-value=0.037 Score=46.18 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=20.5
Q ss_pred ceEEEECCCCCchHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
-.++|.|++|+|||++++.+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998763
No 465
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=93.82 E-value=0.12 Score=49.99 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=57.1
Q ss_pred HHHHHhcCCCceEEEECCCCCchHHH-HHHHHHHHhhhCCCCeEEEEEccccCCChHHHHHHHHHHHHHhhh----cccc
Q 014789 44 VSSSVTEACNNSILLLGPRGSGKIAV-LELILTDLLLEYPDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ----LLFS 118 (418)
Q Consensus 44 l~~~~~~~~~~~ill~G~~GtGKT~l-~~~~~~~l~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~----~~~~ 118 (418)
+...+.-+.+..+.|.|++|+|||++ +..++++.. .++.+|++-+-.-.. -..++.+.+..... ..+.
T Consensus 166 ID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~----~dv~~V~~~IGeR~~---Ev~e~~~~~~~~g~m~rtvvV~ 238 (515)
T 2r9v_A 166 IDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKG----QGVYCIYVAIGQKKS---AIARIIDKLRQYGAMEYTTVVV 238 (515)
T ss_dssp HHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTT----TTEEEEEEEESCCHH---HHHHHHHHHHHTTGGGGEEEEE
T ss_pred cccccccccCCEEEEEcCCCCCccHHHHHHHHHhhc----CCcEEEEEEcCCCcH---HHHHHHHHHHhCCCcceeEEEE
Confidence 33444556788999999999999999 556666542 235556655433222 24455555533221 1111
Q ss_pred cCC--ChHh-H-----HHHHHHHHhhcCCCceEEEEEecchhhhhh
Q 014789 119 KMA--SFDD-N-----SQFMIEMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 119 ~~~--~~~~-~-----~~~l~~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
... +... . --.+-+++.. .++.++|++|++-.+..
T Consensus 239 atad~p~~~r~~a~~~a~tiAEyfrd---~G~dVLli~DslTr~A~ 281 (515)
T 2r9v_A 239 ASASDPASLQYIAPYAGCAMGEYFAY---SGRDALVVYDDLSKHAV 281 (515)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHHHT---TTCEEEEEEETHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHH---cCCcEEEEeccHHHHHH
Confidence 111 1111 1 1123345544 36899999999876654
No 466
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=93.77 E-value=0.18 Score=48.84 Aligned_cols=107 Identities=18% Similarity=0.227 Sum_probs=58.7
Q ss_pred HHHHHhcCCCceEEEECCCCCchHHH-HHHHHHHHhhhC----CCCeEEEEEccccCCChHHHHHHHHHHHHHhhh----
Q 014789 44 VSSSVTEACNNSILLLGPRGSGKIAV-LELILTDLLLEY----PDTISVIKLNGLLHSDDCCAFKEIARQLCMEHQ---- 114 (418)
Q Consensus 44 l~~~~~~~~~~~ill~G~~GtGKT~l-~~~~~~~l~~~~----~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~---- 114 (418)
+...+.-+.+..++|.|++|+|||++ +..++++...+. ..++.+|++-+-.-.. -..++.+.+.....
T Consensus 153 ID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~---Ev~~~~~~~~~~g~m~~t 229 (510)
T 2ck3_A 153 VDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRS---TVAQLVKRLTDADAMKYT 229 (510)
T ss_dssp HHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHH---HHHHHHHHHHHTTCGGGE
T ss_pred eccccccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcH---HHHHHHHHHHhcCCcccc
Confidence 33445556788999999999999999 667777665320 1125555554433222 24455555543221
Q ss_pred cccccCC--ChHhH------HHHHHHHHhhcCCCceEEEEEecchhhhhh
Q 014789 115 LLFSKMA--SFDDN------SQFMIEMLRECGLAHKTIIFVLDEFDLFAQ 156 (418)
Q Consensus 115 ~~~~~~~--~~~~~------~~~l~~~l~~~~~~~~~~viilDEid~l~~ 156 (418)
..+.... +.... --.+-+++.. .++.++|++|++-.+..
T Consensus 230 vvV~atad~p~~~r~~a~~~a~tiAEyfrd---~G~dVLli~Dsltr~A~ 276 (510)
T 2ck3_A 230 IVVSATASDAAPLQYLAPYSGCSMGEYFRD---NGKHALIIYDDLSKQAV 276 (510)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHHHHHHT---TTCEEEEEEETHHHHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHHHHHHHHH---cCCcEEEEEcCHHHHHH
Confidence 1111111 11111 1123345544 36899999999876654
No 467
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.77 E-value=0.029 Score=52.22 Aligned_cols=26 Identities=38% Similarity=0.588 Sum_probs=22.1
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
.+..+.|.||.|+||||+++.++.-+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 46678899999999999999887654
No 468
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.77 E-value=0.035 Score=52.17 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++.-+.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 466788999999999999998876543
No 469
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.76 E-value=0.038 Score=46.36 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=21.7
Q ss_pred CCceEEEECCCCCchHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
....++|.|++|+|||++++.+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999998753
No 470
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.74 E-value=0.04 Score=46.17 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=20.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.-.++|.|++|+|||++++.+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999998764
No 471
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.74 E-value=0.13 Score=49.62 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=28.0
Q ss_pred HhcCCCceEEEECCCCCchHHHHHHHHHHHhhhC
Q 014789 48 VTEACNNSILLLGPRGSGKIAVLELILTDLLLEY 81 (418)
Q Consensus 48 ~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~ 81 (418)
..-..+..+.|.|++|+|||+++..++......+
T Consensus 160 ~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~ 193 (498)
T 1fx0_B 160 APYRRGGKIGLFGGAGVGKTVLIMELINNIAKAH 193 (498)
T ss_dssp SCCCTTCCEEEEECSSSSHHHHHHHHHHHTTTTC
T ss_pred cccccCCeEEeecCCCCCchHHHHHHHHHHHhhC
Confidence 4455688899999999999999999998865443
No 472
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.74 E-value=0.037 Score=45.57 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.1
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
...++|.|++|+|||++++.+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999998865
No 473
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.74 E-value=0.033 Score=45.28 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=18.8
Q ss_pred eEEEECCCCCchHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILT 75 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~ 75 (418)
.++|.|++|+|||++++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 588999999999999998853
No 474
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.74 E-value=0.037 Score=45.52 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.2
Q ss_pred ceEEEECCCCCchHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
-.++|.|++|+|||++++.+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998753
No 475
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.72 E-value=0.042 Score=45.34 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.4
Q ss_pred ceEEEECCCCCchHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
-.+++.|++|+|||++++.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999998764
No 476
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.70 E-value=0.04 Score=45.34 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.-.++|.|++|+|||++++.+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999998753
No 477
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.70 E-value=0.08 Score=46.83 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=27.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEc
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLN 91 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in 91 (418)
...+++.|.+|+||||++..++..+. .. .++.++..+
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g-~~v~vvd~D 50 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DN-YKVAYVNLD 50 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TT-SCEEEEECC
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CC-CeEEEEeCC
Confidence 55678999999999999999998887 33 234444433
No 478
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.69 E-value=0.039 Score=45.96 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.9
Q ss_pred ceEEEECCCCCchHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILT 75 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~ 75 (418)
..+.|.|++|+|||++++.+..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4688999999999999999875
No 479
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.68 E-value=0.043 Score=46.75 Aligned_cols=25 Identities=20% Similarity=0.042 Sum_probs=22.9
Q ss_pred ceEEEECCCCCchHHHHHHHHHHHh
Q 014789 54 NSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
..|.|.|++|||||++++.+++.+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999999885
No 480
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.67 E-value=0.049 Score=44.95 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=21.5
Q ss_pred CCceEEEECCCCCchHHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
..-.+++.|++|+|||++++.+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999988753
No 481
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.65 E-value=0.035 Score=47.02 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=20.8
Q ss_pred CCceEEEECCCCCchHHHHHHHHH
Q 014789 52 CNNSILLLGPRGSGKIAVLELILT 75 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~ 75 (418)
....+++.|++|+|||++++.+..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456799999999999999998864
No 482
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.62 E-value=0.047 Score=45.95 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=21.9
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHH
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
...-.++|.|++|+|||++++.+...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999998764
No 483
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.61 E-value=0.044 Score=46.10 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.3
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.-.++|.|++|+|||++++.++..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999999865
No 484
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.58 E-value=0.045 Score=45.11 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=20.7
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.-.++|.|++|+|||++++.+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999998764
No 485
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.58 E-value=0.04 Score=45.84 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=20.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.-.+++.|++|+|||++++.+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999998864
No 486
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.57 E-value=0.046 Score=45.65 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=20.6
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.-.++|.|++|+|||++++.++..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999988764
No 487
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.57 E-value=0.045 Score=45.71 Aligned_cols=23 Identities=22% Similarity=0.476 Sum_probs=20.6
Q ss_pred ceEEEECCCCCchHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
-.+++.|++|+|||++++.++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 488
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.56 E-value=0.096 Score=47.70 Aligned_cols=61 Identities=8% Similarity=0.051 Sum_probs=30.5
Q ss_pred CCChhhhHHHHHHHHHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEc
Q 014789 30 SDSPDSNYSKLKFLVSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLN 91 (418)
Q Consensus 30 l~gr~~e~~~l~~~l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in 91 (418)
++.-.+....+...+........+..+.++|..|+||||++-.++..+.... .++..+..+
T Consensus 18 ~~~~~~~~~~l~~~l~~~~~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G-~~VlliD~D 78 (307)
T 3end_A 18 IPTGADGEGSVQVHLDEADKITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG-KRVLQIGCD 78 (307)
T ss_dssp ----------------------CCEEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEEES
T ss_pred CCcCccccchhhhhhccccccCCceEEEEECCCCccHHHHHHHHHHHHHHCC-CeEEEEeCC
Confidence 3333444456777777666666677888889999999999999999988753 335455444
No 489
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.56 E-value=0.041 Score=45.69 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=20.4
Q ss_pred ceEEEECCCCCchHHHHHHHHHH
Q 014789 54 NSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 54 ~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
-.++|.|++|+|||++++.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998754
No 490
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.54 E-value=0.037 Score=49.32 Aligned_cols=25 Identities=40% Similarity=0.707 Sum_probs=21.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
+..+.|.||.|+||||+++.++..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 5578899999999999999987655
No 491
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.52 E-value=0.017 Score=51.55 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=23.0
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..++|.|++|+||||+++.+++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356788999999999999999887763
No 492
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.52 E-value=0.042 Score=45.25 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.1
Q ss_pred CceEEEECCCCCchHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILT 75 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~ 75 (418)
...++|.|++|+|||++++.+..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999864
No 493
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=93.49 E-value=0.077 Score=51.02 Aligned_cols=46 Identities=20% Similarity=0.269 Sum_probs=33.0
Q ss_pred HHHHHhcCCCceEEEECCCCCchHHHHHHHHHHHhhhCCCCeEEEEEccc
Q 014789 44 VSSSVTEACNNSILLLGPRGSGKIAVLELILTDLLLEYPDTISVIKLNGL 93 (418)
Q Consensus 44 l~~~~~~~~~~~ill~G~~GtGKT~l~~~~~~~l~~~~~~~~~~v~in~~ 93 (418)
|...+.-..+..+.|.||+|+||||+++.++...... ...+.+++.
T Consensus 148 ld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~----~G~i~~~G~ 193 (438)
T 2dpy_A 148 INALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD----VIVVGLIGE 193 (438)
T ss_dssp HHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS----EEEEEEESC
T ss_pred EeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCC----eEEEEEece
Confidence 3333444567889999999999999999988875422 445666654
No 494
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.47 E-value=0.083 Score=47.17 Aligned_cols=39 Identities=28% Similarity=0.391 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhcCC-CceEEEECCCCCchHHHHHHHHH
Q 014789 37 YSKLKFLVSSSVTEAC-NNSILLLGPRGSGKIAVLELILT 75 (418)
Q Consensus 37 ~~~l~~~l~~~~~~~~-~~~ill~G~~GtGKT~l~~~~~~ 75 (418)
.+.+.+.+......+. ...+++.|++|+|||++++.++.
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 22 QTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhC
Confidence 3444444444443332 45789999999999999999875
No 495
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.46 E-value=0.045 Score=45.50 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=21.9
Q ss_pred CCCceEEEECCCCCchHHHHHHHHHH
Q 014789 51 ACNNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 51 ~~~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.....+++.|++|+|||++++.+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998753
No 496
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.46 E-value=0.049 Score=45.53 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=21.0
Q ss_pred CceEEEECCCCCchHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.-.++|.|++|+|||++++.+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 457899999999999999998764
No 497
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=93.44 E-value=0.064 Score=48.87 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=20.8
Q ss_pred CceEEEECCCCCchHHHHHHHHHHH
Q 014789 53 NNSILLLGPRGSGKIAVLELILTDL 77 (418)
Q Consensus 53 ~~~ill~G~~GtGKT~l~~~~~~~l 77 (418)
+..+.|.||+|+||||+++.++ .+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 4578899999999999999988 43
No 498
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.44 E-value=0.038 Score=46.02 Aligned_cols=22 Identities=18% Similarity=0.353 Sum_probs=19.6
Q ss_pred eEEEECCCCCchHHHHHHHHHH
Q 014789 55 SILLLGPRGSGKIAVLELILTD 76 (418)
Q Consensus 55 ~ill~G~~GtGKT~l~~~~~~~ 76 (418)
.+++.|++|+|||++++.+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5889999999999999998753
No 499
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.43 E-value=0.038 Score=50.01 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=22.6
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++..+.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 356788999999999999998876554
No 500
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.43 E-value=0.044 Score=51.78 Aligned_cols=27 Identities=37% Similarity=0.421 Sum_probs=22.8
Q ss_pred CCceEEEECCCCCchHHHHHHHHHHHh
Q 014789 52 CNNSILLLGPRGSGKIAVLELILTDLL 78 (418)
Q Consensus 52 ~~~~ill~G~~GtGKT~l~~~~~~~l~ 78 (418)
.+..+.|.||.|+||||+++.++.-+.
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 467788999999999999999886443
Done!