Query 014790
Match_columns 418
No_of_seqs 137 out of 1445
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:32:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1440 CDP-diacylglycerol syn 100.0 2.7E-96 6E-101 731.4 28.8 403 5-414 18-431 (432)
2 PLN02594 phosphatidate cytidyl 100.0 8.9E-90 1.9E-94 680.6 36.1 336 82-417 2-341 (342)
3 PRK11624 cdsA CDP-diglyceride 100.0 5.6E-53 1.2E-57 415.4 31.7 268 46-374 1-280 (285)
4 PLN02953 phosphatidate cytidyl 100.0 1.1E-51 2.4E-56 413.1 30.1 272 38-376 89-398 (403)
5 COG4589 Predicted CDP-diglycer 100.0 1.7E-49 3.7E-54 372.8 28.8 260 41-375 30-301 (303)
6 COG0575 CdsA CDP-diglyceride s 100.0 1.4E-47 3E-52 374.0 29.5 257 46-375 1-262 (265)
7 PF01148 CTP_transf_1: Cytidyl 100.0 2.8E-47 6E-52 365.8 26.8 258 48-375 1-259 (259)
8 PRK04032 hypothetical protein; 99.9 1.4E-27 3E-32 214.6 10.4 102 224-373 22-124 (159)
9 PF01864 DUF46: Putative integ 98.9 3E-09 6.4E-14 98.0 8.9 97 236-372 44-140 (175)
10 KOG4453 Predicted ER membrane 97.9 7.1E-05 1.5E-09 71.0 8.9 51 212-264 164-214 (269)
11 COG0170 SEC59 Dolichol kinase 97.4 0.00056 1.2E-08 65.4 8.6 48 212-260 121-168 (216)
12 KOG2468 Dolichol kinase [Lipid 94.0 0.048 1E-06 56.9 3.7 46 213-260 418-463 (510)
13 KOG1440 CDP-diacylglycerol syn 77.0 68 0.0015 33.8 13.9 44 207-250 270-313 (432)
14 PF01940 DUF92: Integral membr 66.7 42 0.00092 32.4 9.3 49 212-260 114-171 (226)
15 TIGR00297 conserved hypothetic 60.7 58 0.0013 31.8 9.0 46 213-258 120-174 (237)
16 COG1836 Predicted membrane pro 58.9 43 0.00093 32.8 7.6 47 213-259 129-184 (247)
17 TIGR00994 3a0901s05TIC20 chlor 55.1 34 0.00075 33.7 6.4 62 6-68 75-136 (267)
18 COG0004 AmtB Ammonia permease 40.7 34 0.00073 36.0 4.1 38 312-352 281-318 (409)
19 PF11460 DUF3007: Protein of u 38.4 92 0.002 26.6 5.6 17 392-408 88-104 (104)
20 TIGR00836 amt ammonium transpo 36.4 28 0.0006 36.6 2.7 38 312-352 280-317 (403)
21 PF05767 Pox_A14: Poxvirus vir 36.3 2.1E+02 0.0044 23.9 7.1 33 316-350 49-81 (92)
22 TIGR01597 PYST-B Plasmodium yo 32.3 2E+02 0.0043 28.2 7.5 36 45-80 195-230 (255)
23 PRK10666 ammonium transporter; 31.3 56 0.0012 34.6 4.0 38 312-352 304-341 (428)
24 PF01741 MscL: Large-conductan 31.2 1.7E+02 0.0036 25.8 6.4 80 327-413 35-128 (128)
25 PF04868 PDE6_gamma: Retinal c 31.1 29 0.00063 27.9 1.4 18 339-356 41-58 (83)
26 PRK02868 hypothetical protein; 29.9 92 0.002 30.6 5.0 19 386-405 60-78 (245)
27 PF11283 DUF3084: Protein of u 28.3 1.5E+02 0.0033 24.1 5.1 18 224-241 23-42 (79)
28 PRK10847 hypothetical protein; 28.2 41 0.00088 32.0 2.2 22 212-233 80-101 (219)
29 TIGR03092 SASP_sspI small, aci 27.5 87 0.0019 24.5 3.4 28 383-410 37-64 (65)
30 TIGR03644 marine_trans_1 proba 27.4 67 0.0014 33.8 3.8 37 312-352 294-330 (404)
31 KOG4753 Predicted membrane pro 27.3 1.7E+02 0.0038 25.6 5.6 13 1-13 1-13 (124)
32 PF14098 SSPI: Small, acid-sol 27.3 82 0.0018 24.6 3.3 28 383-410 38-65 (65)
33 PF10766 DUF2592: Protein of u 23.1 2.8E+02 0.0061 19.6 4.9 34 50-95 4-37 (41)
34 PF10031 DUF2273: Small integr 22.9 3E+02 0.0064 20.3 5.5 40 43-83 3-42 (51)
35 PF09720 Unstab_antitox: Putat 22.9 84 0.0018 23.0 2.6 20 393-412 1-20 (54)
36 PF07136 DUF1385: Protein of u 20.4 2.4E+02 0.0051 27.6 5.8 64 31-94 122-194 (236)
No 1
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=100.00 E-value=2.7e-96 Score=731.35 Aligned_cols=403 Identities=52% Similarity=0.956 Sum_probs=377.0
Q ss_pred CCCCCCCch--hhhccc----cCCCCCccccccCCCccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 014790 5 NNTSAPTTP--RLRHRR----RSNEAIPDATKANGSHLLVHDRNKYKSFLVRAYSTVWMIAGFVLIVYMGHLYITAMVVV 78 (418)
Q Consensus 5 ~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~is~ivli~~~i~ii~~G~~~~~~lv~~ 78 (418)
|++.+++++ ++++|+ +++|.+++.+.....+.+++.+++|+|+.+|.+++++|+..+.+++++||.|...++..
T Consensus 18 ~~~~~~s~~~~~l~~~~~~~~~~~~~s~~~~p~~~~~~l~~~~~~~~n~~~R~i~t~~mi~~f~~i~~~g~~~~~~lv~~ 97 (432)
T KOG1440|consen 18 NATESESTPSGELQLRDRTRKIRPPVSKDRTPVRLKPLLSALRSRWKNFFRRGILTLAMISGFFLIIYMGHKYLMALVLV 97 (432)
T ss_pred cCCCCCCCcccccchhhcccccCCCCCCCCCcccchhhhhhCCCCceeeehHHHHHHHHHhccEEEEecCcchhhhhhhh
Confidence 344445444 666666 66677777788888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 014790 79 IQIFMARELFNLLRKAHEERDLPGFRMLNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYIS 158 (418)
Q Consensus 79 i~~~~~~E~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~l~~~ 158 (418)
+++.+.+|.+++.++..+++++|+++.++||+++++++++|++.+..++......|..+. .+.++|+++++.+|+.
T Consensus 98 iQi~~~~Eii~i~~~~~~~k~lp~f~~l~w~fl~t~~yf~yg~~~~~yf~~v~~~~~~l~----~LV~yh~fi~f~lYi~ 173 (432)
T KOG1440|consen 98 IQIKCFKEIIAIGRKVSREKDLPWFRLLNWYFLLTVNYFVYGEILVAYFAAVFIRDRFLF----FLVRYHRFICFALYLI 173 (432)
T ss_pred HHHHHHHHHHHHhhccccccCCceeehhhhHHHHHHHHHHhHHHHHHHHHHHHhhhHHHH----HHHHhcccccHHHHHH
Confidence 999999999999999999999999999999999999999999999888887776665543 4566999999999999
Q ss_pred HHHHHHHHHhccccchhhhhHHHHHHHHHHHHHhhhhHHhhhhhhhHHHHHhhHHHHhhhHHHHHHhhhcCCCCCcccCC
Q 014790 159 GFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSP 238 (418)
Q Consensus 159 ~~v~fvl~L~~~~~~~~~~~~~~~~~~l~~v~~~s~~~i~~~~~G~~w~i~~~~~V~~nDi~AY~~G~~fGK~kL~~iSP 238 (418)
++++|+++|+|+.|++||++++|+|+++++++.++++++.|+++|++|+++|+.+|+|||++||.+|..||||||+++||
T Consensus 174 gf~~FV~sL~k~~yk~QFg~fawtH~sll~Vv~qs~l~i~N~feG~fWFl~P~~lvicnDi~AY~~Gf~fGktPLiklSP 253 (432)
T KOG1440|consen 174 GFVSFVLSLRKGIYKLQFGLFAWTHMSLLLVVTQSHLVIQNLFEGLFWFLVPAGLVICNDIFAYLFGFFFGKTPLIKLSP 253 (432)
T ss_pred HHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhHhheeCchHHHHHhhhhcCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCC-ccccCCCCCCCCCCCCCCCC----CCccccccchhHHH
Q 014790 239 KKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATG-WLHCDPGPLFKPESFPLPGW----LPWKEITILPVQWH 313 (418)
Q Consensus 239 kKTwEGfIGG~i~t~i~~~i~~~~l~~~~~~~cp~~~~~~~-~~~c~~~~~f~~~~~~~~~~----~~~~~i~i~~~~~~ 313 (418)
||||||||||.++|++.+.++++.+++++|++||..|+++. +++||+++.|.+++|.+|.+ .+++++++.|.++|
T Consensus 254 KKTwEGFiGg~~~tvv~~i~~s~vL~~~~~~~cp~~d~~t~~~~~c~p~~~F~~~~y~lp~~i~~~i~~k~is~~p~~~H 333 (432)
T KOG1440|consen 254 KKTWEGFIGGTFGTVVFGILFSYVLGHYTFFTCPVKDFSTTPLLSCEPKPLFEPQTYGLPGVISITIRLKSISLPPFQFH 333 (432)
T ss_pred CCccchhhchhHHHHHHHHHHHHHhccCeEEEecccccCCCCccccCcccccCcceecCCceeeeeccccccccchHHHH
Confidence 99999999999999999999999999999999999999987 79999999999999999987 45578899999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCcCCCcchhhhhhhhhhHHHHHHHHHHHhccCCCCCHHHHHHHHHHc
Q 014790 314 ALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTA 393 (418)
Q Consensus 314 ~lil~l~asl~a~fGDL~eS~~KR~~gIKDsG~lIPGHGGiLDRfDsll~~~~f~y~y~~~fi~~~~~~~~~~~~~~~~~ 393 (418)
++.+|+++|++||||||+||++||++||||||+.|||||||+||||||++||.|+|.|+++|++.+.+| +++++|+.
T Consensus 334 sial~~faS~iaPFGGFfASgfKRafKiKDFG~~IPGHGGI~DR~DCQ~lma~Fay~Yi~SFI~~~~~s--~ll~qi~~- 410 (432)
T KOG1440|consen 334 SIALGLFASFIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQILMATFAYVYIQSFIRLPGVS--KLLDQILT- 410 (432)
T ss_pred HHHHHHHHHhhccchhHHHHHhHHhhcCCcccccCCCCCCcchhhHHHHHHHHHHHHHHHHHhccCCHH--HHHHHHHh-
Confidence 999999999999999999999999999999999999999999999999999999999999999988765 99999998
Q ss_pred CCHHHHHHHHHHHHHHHhhcc
Q 014790 394 LTYEEQKALYMKLGEILQERL 414 (418)
Q Consensus 394 l~~~~~~~l~~~l~~~~~~~~ 414 (418)
|++|||++|+|+|+++++++.
T Consensus 411 l~~~qq~~l~~~L~~~l~~~~ 431 (432)
T KOG1440|consen 411 LTPEQQLNLFEKLQRRLSSKG 431 (432)
T ss_pred CCHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999864
No 2
>PLN02594 phosphatidate cytidylyltransferase
Probab=100.00 E-value=8.9e-90 Score=680.64 Aligned_cols=336 Identities=85% Similarity=1.454 Sum_probs=319.4
Q ss_pred HHHHHHHHHhhhccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014790 82 FMARELFNLLRKAHEERDLPGFRMLNWHFFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFV 161 (418)
Q Consensus 82 ~~~~E~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~l~~~~~v 161 (418)
.+++|++++.++.++++++|+++.++||++++++++.|++.+..++......|+.+..++..++++|++++|++|++|++
T Consensus 2 ~~f~Eii~i~~~~~~~~~lp~~~~l~Wyf~~~~~~~~yg~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~isf~ly~~gfv 81 (342)
T PLN02594 2 LMARELFNLARKAREERQLPGFRLLNWHFFFTAMFFVYGRFLKQQLVNTVTSDKFLYRLVSGLIKYHMAICYSLYIAGFV 81 (342)
T ss_pred hhhHHHHHHhhhhhhhhCCCchhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999998888888788878777778899999999999999999
Q ss_pred HHHHHHhccccchhhhhHHHHHHHHHHHHHhhhhHHhhhhhhhHHHHHhhHHHHhhhHHHHHHhhhcCCCCCcccCCCCc
Q 014790 162 WFILTLKKKMYKYQFSQYAWTHMILIVVFAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKT 241 (418)
Q Consensus 162 ~fvl~L~~~~~~~~~~~~~~~~~~l~~v~~~s~~~i~~~~~G~~w~i~~~~~V~~nDi~AY~~G~~fGK~kL~~iSPkKT 241 (418)
+|+++|+|+++++|+.+++|+++++++++.++++++.|+++|..|+++|+++||+||++||++||.||||||+++|||||
T Consensus 82 ~FvlsL~k~~~k~qf~~~a~t~~~llyV~~~~~~ii~ni~~G~~w~~l~~~lV~~nDi~AY~~G~~fGk~kL~~iSPkKT 161 (342)
T PLN02594 82 WFILTLKKGMYKYQFGQYAWTHMILIVVFTQSSFTVANIFEGIFWFLLPASLIVINDIAAYLFGFFFGRTPLIKLSPKKT 161 (342)
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCccCCCCc
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCCCCCCCCCCCCCC----CCccccccchhHHHHHHH
Q 014790 242 WEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGW----LPWKEITILPVQWHALCL 317 (418)
Q Consensus 242 wEGfIGG~i~t~i~~~i~~~~l~~~~~~~cp~~~~~~~~~~c~~~~~f~~~~~~~~~~----~~~~~i~i~~~~~~~lil 317 (418)
|||++||+++|++++.+++.+++++.|++||.++++..+++||++++|.+++|.+|.+ ++..++.+.|.++|++++
T Consensus 162 wEGfiGg~i~T~i~~~~~~~~~~~~~~~~cp~~~~~~~~~~C~p~~~f~~~~~~~p~~~~~~~~~~~i~~~~~~~h~l~l 241 (342)
T PLN02594 162 WEGFIGASVTTLISAFYLANIMGKFQWLTCPRKDLSTGWLECDPDPLFKPETYPLPGWIPRWFPWKEVSVLPVQWHALSL 241 (342)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhcccccccCCccccccCcccCCCccccccccccCCccccccccccccccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999965 233356667888999999
Q ss_pred HHHHHHhhhhhhHHHHHhhhcCCCCccCCCcCCCcchhhhhhhhhhHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCHH
Q 014790 318 GLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILTALTYE 397 (418)
Q Consensus 318 ~l~asl~a~fGDL~eS~~KR~~gIKDsG~lIPGHGGiLDRfDsll~~~~f~y~y~~~fi~~~~~~~~~~~~~~~~~l~~~ 397 (418)
|+++|++||+|||+||++||++||||||++||||||+|||+|||++|+|++|+|+.+|++.+++|++++++++.++|++|
T Consensus 242 ~l~aSl~a~fGdlfaS~~KR~~~IKDfG~~IPGHGGilDRfDs~l~~~~f~y~y~~~fi~~~~~~~~~il~~i~~~l~~~ 321 (342)
T PLN02594 242 GLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYYQSFIVPQSVSVGKLLDQILTLLTDE 321 (342)
T ss_pred HHHHHHHHHhhhHHHHHHHHccCCCcccCccCCCccccccccHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred HHHHHHHHHHHHHhhcccCC
Q 014790 398 EQKALYMKLGEILQERLFGQ 417 (418)
Q Consensus 398 ~~~~l~~~l~~~~~~~~~~~ 417 (418)
||++|+++|++++++++...
T Consensus 322 ~q~~l~~~l~~~l~~~g~~~ 341 (342)
T PLN02594 322 EQKELYVKLGQMLQERGLGL 341 (342)
T ss_pred HHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999998765
No 3
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=100.00 E-value=5.6e-53 Score=415.44 Aligned_cols=268 Identities=22% Similarity=0.289 Sum_probs=172.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHHHHHHHHHHH
Q 014790 46 SFLVRAYSTVWMIAGFVLIVYM-GHLYITAMVVVIQIFMARELFNLLRKAHEERDLPGFRMLNWHFFFTAMLFVYGRILS 124 (418)
Q Consensus 46 ~~~~R~is~ivli~~~i~ii~~-G~~~~~~lv~~i~~~~~~E~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 124 (418)
++++|++|+++++++++.+++. |++++.+++++++.++.+|++++.+..+... .+. +.+.............
T Consensus 1 ml~~Riita~vlv~l~l~~i~~~~~~~f~~l~~~~~~l~~~E~~~l~~~~~~~~-~~~------~~~~~~~~~~~~~~~~ 73 (285)
T PRK11624 1 MLKYRLITAFILIPVVIAALFLLPPVGFAIVTLVVCMLAAWEWGQLSGFASRSQ-RVW------LAVLCGLLLALMLFLL 73 (285)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccch-hHH------HHHHHHHHHHHHHHHH
Confidence 4789999999999999998876 6688999999999999999999986433211 111 0111110000000000
Q ss_pred HHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--hhhhhHHHHHHHHHH-HHHhhhhH-Hhhh
Q 014790 125 QRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYK--YQFSQYAWTHMILIV-VFAQSSFT-VASI 200 (418)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~l~~~~~v~fvl~L~~~~~~--~~~~~~~~~~~~l~~-v~~~s~~~-i~~~ 200 (418)
....... + .. .......... ++......++. ++.+.. +.......+....++ +.....+. +...
T Consensus 74 ~~~~~~~--~----~~---~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 141 (285)
T PRK11624 74 PEYHHNI--H----QP---LVEISLWASL-GWWIVALLLVL--FYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAW 141 (285)
T ss_pred HHhhhhh--h----HH---HHHHHHHHHH-HHHHHHHHHHH--HccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 0000000 0 00 0000000000 11000111111 111111 111111222232222 22222222 2221
Q ss_pred ------hhhhHHHHHhhHHHHhhhHHHHHHhhhcCCCCCc-ccCCCCchhHHHHHHHHHHHHHHHHHHHhhhccccccCC
Q 014790 201 ------FEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLI-KLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPR 273 (418)
Q Consensus 201 ------~~G~~w~i~~~~~V~~nDi~AY~~G~~fGK~kL~-~iSPkKTwEGfIGG~i~t~i~~~i~~~~l~~~~~~~cp~ 273 (418)
++|..|.++.+.+||+||++||++||.||||||+ ++||||||||++||++++++++.+++++.. +
T Consensus 142 ~~~~~~~~G~~~vl~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~~~~~~~~~~~~-~------- 213 (285)
T PRK11624 142 HYDENHYSGAWWLLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAAVISWLFGMWAP-L------- 213 (285)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHHHHHHHHHHHHc-c-------
Confidence 1488899999999999999999999999999999 699999999999999999999988875421 0
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCcCCCcc
Q 014790 274 KDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGG 353 (418)
Q Consensus 274 ~~~~~~~~~c~~~~~f~~~~~~~~~~~~~~~i~i~~~~~~~lil~l~asl~a~fGDL~eS~~KR~~gIKDsG~lIPGHGG 353 (418)
+ .. .++.++++++++++||+|||+||++||++||||||++||||||
T Consensus 214 ---------------------------~-----~~--~~~~~~~~~~~~~~~~~GDL~ES~lKR~~gVKDSG~llPGHGG 259 (285)
T PRK11624 214 ---------------------------D-----VA--PVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGG 259 (285)
T ss_pred ---------------------------c-----cc--HHHHHHHHHHHHHHHHHhHHHHHHHhhccCCCCCcCcCCCcCc
Confidence 0 00 1567889999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHH
Q 014790 354 ITDRMDCQMVMAVFAYIYHQS 374 (418)
Q Consensus 354 iLDRfDsll~~~~f~y~y~~~ 374 (418)
+|||+||+++++|+.|+++..
T Consensus 260 iLDR~DSLlfa~P~~~~~~~~ 280 (285)
T PRK11624 260 ILDRIDSLTAAVPVFACLLLL 280 (285)
T ss_pred chhhHhHHHHHHHHHHHHHHH
Confidence 999999999999998876543
No 4
>PLN02953 phosphatidate cytidylyltransferase
Probab=100.00 E-value=1.1e-51 Score=413.14 Aligned_cols=272 Identities=24% Similarity=0.328 Sum_probs=191.9
Q ss_pred cCChhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccCc-chhhHHHHHHHHHHHHH
Q 014790 38 VHDRNKYKSFLVRAYSTVWMIAGFVLIVYMGHLYITAMVVVIQIFMARELFNLLRKAHEERD-LPGFRMLNWHFFFTAML 116 (418)
Q Consensus 38 ~~~~~~~~~~~~R~is~ivli~~~i~ii~~G~~~~~~lv~~i~~~~~~E~~~l~~~~~~~~~-~~~~~~l~~~~l~~~~~ 116 (418)
+.+.+|.+|+++|++|+++++++.+.+++.|++++.++++++..++.+|++++.+....... .+...........+..
T Consensus 89 ~~~~~~~~~l~~RIiSglvl~~l~l~vV~~GGw~F~~~va~iv~lg~~E~frmv~~~gi~p~~~~~~~~~~~~g~v~~~- 167 (403)
T PLN02953 89 EDKQKKASQLKKRVIFGIGIGLPVGCVVLAGGWFFTVALAASVFIGSREYFELVRSRGIAKGMTPPPRYVSRVCSVICA- 167 (403)
T ss_pred cccccccccHHHHHHHHHHHHHHHHheeeeCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHH-
Confidence 44557788999999999999999999999999999999999999999999999876432100 0111111011100010
Q ss_pred HHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHH-HHhhhh
Q 014790 117 FVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMILIVV-FAQSSF 195 (418)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~l~~~~~v~fvl~L~~~~~~~~~~~~~~~~~~l~~v-~~~s~~ 195 (418)
.+.. ..+. ... ....+.+.... +.+.+..+.+. ..+.+.+.+.+.+.++ +.++++
T Consensus 168 -~~~v--~~~~-----------------~g~-~~~~l~l~~~~-i~~~ll~~~~~--~~~~di~~s~fgl~Yig~lpsf~ 223 (403)
T PLN02953 168 -LMPI--LTLY-----------------FGN-IDILVTSAAFL-VAIALLVQRGS--PRFAQLSSTMFGLFYCGYLPCFW 223 (403)
T ss_pred -HHHH--HHHH-----------------HhH-HHHHHHHHHHH-HHHHHHhcCCc--ccHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0000 000 00001011111 11122222222 1345555555554444 334444
Q ss_pred HHhh------------------------------------hhhhhHHHHHhhHHHHhhhHHHHHHhhhcCCCCCcccCCC
Q 014790 196 TVAS------------------------------------IFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLIKLSPK 239 (418)
Q Consensus 196 ~i~~------------------------------------~~~G~~w~i~~~~~V~~nDi~AY~~G~~fGK~kL~~iSPk 239 (418)
+..+ ...|..++++.+++||+||++||++||.|||||+.++|||
T Consensus 224 v~Lr~~~~~~~~~~~~~~~f~~l~~~~~~~~p~~~~~~~~~~~Gl~~~l~~~~~vw~~Di~AY~~G~~fGk~kl~~ISPk 303 (403)
T PLN02953 224 VKLRCGLAAPALNTGKLSPFISLKFSIGKTWPILLGGQAHWTVGLVATLISFSGVIATDTFAFLGGKAFGRTPLTSISPK 303 (403)
T ss_pred HHHhhccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCC
Confidence 3222 1348899999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHH
Q 014790 240 KTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGL 319 (418)
Q Consensus 240 KTwEGfIGG~i~t~i~~~i~~~~l~~~~~~~cp~~~~~~~~~~c~~~~~f~~~~~~~~~~~~~~~i~i~~~~~~~lil~l 319 (418)
|||||++||++++++++.+++.++. | + ...++++++++
T Consensus 304 KTwEG~iGGil~~vlv~~l~~~~l~---~--------------------------------~-------~~~~~~i~lg~ 341 (403)
T PLN02953 304 KTWEGTFVGLVGCIAITILLSKSLS---W--------------------------------P-------QSLFSSIAFGF 341 (403)
T ss_pred CeeeeehhHHHHHHHHHHHHHHHHc---c--------------------------------c-------hHHHHHHHHHH
Confidence 9999999999999999988775532 1 0 01257789999
Q ss_pred HHHHhhhhhhHHHHHhhhcCCCCccCCCcCCCcchhhhhhhhhhHHHHHHHHHHHhc
Q 014790 320 FASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQSFI 376 (418)
Q Consensus 320 ~asl~a~fGDL~eS~~KR~~gIKDsG~lIPGHGGiLDRfDsll~~~~f~y~y~~~fi 376 (418)
++++.|++|||+||++||++||||+|+++|||||+|||+||+++++|++|+++++..
T Consensus 342 li~~~~~~GDL~eS~iKR~~gVKDsG~liPGHGGiLDR~DSllfaaPv~y~~~~~~~ 398 (403)
T PLN02953 342 LNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDSYIFTGALAYSFIKTSL 398 (403)
T ss_pred HHHHHHHhhHHHHHHHhHccCCCCccccCCCCCcchhhHhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999998765
No 5
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=100.00 E-value=1.7e-49 Score=372.76 Aligned_cols=260 Identities=24% Similarity=0.431 Sum_probs=208.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccCc--------chh---hHHHHHH
Q 014790 41 RNKYKSFLVRAYSTVWMIAGFVLIVYMGHLYITAMVVVIQIFMARELFNLLRKAHEERD--------LPG---FRMLNWH 109 (418)
Q Consensus 41 ~~~~~~~~~R~is~ivli~~~i~ii~~G~~~~~~lv~~i~~~~~~E~~~l~~~~~~~~~--------~~~---~~~l~~~ 109 (418)
++++.|+..|+.++|+|+.++..+...|.++...++.++++.+++|+.++...++.++. +|. ...++||
T Consensus 30 ~~~~~~l~~RI~aWW~mv~i~~~~~~l~~~~~l~lF~~iSflalrEfltl~ptr~~d~~~l~~~Y~~lplqy~~i~i~wy 109 (303)
T COG4589 30 ERKIDELNLRIRAWWVMVIIFSLVISLPRWMTLTLFGLISFLALREFLTLIPTRRPDHLALVWFYWVLPLQYLLIGIDWY 109 (303)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccCCccchhhhhhhhhHhHHHhhhHHH
Confidence 34889999999999999999999999999999999999999999999999988765532 111 2236777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHH
Q 014790 110 FFFTAMLFVYGRILSQRLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMILIVV 189 (418)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~l~~~~~v~fvl~L~~~~~~~~~~~~~~~~~~l~~v 189 (418)
..++....+|+..+.+... .+..|. +.++.+....|+..+..+|+++++..+++|...+.+
T Consensus 110 ~mf~ifipvY~fL~Lp~l~-~L~gdt--~gFl~~~s~i~wg~mltvfcish~~~lltL~~~~~~---------------- 170 (303)
T COG4589 110 EMFIIFIPVYGFLILPILM-VLVGDT--SGFLHRVSAIQWGWMLTVFCISHAAYLLTLDITNFQ---------------- 170 (303)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhcch--hhHHHHhHHHHHHHHHHHHHHHhhHHHhhCCCCCcC----------------
Confidence 7777777777766554332 222332 345555566677777777777777777766543321
Q ss_pred HHhhhhHHhhhhhhhHHHHHhhHHHHhhhHHHHHHhhhcCCCCCc-ccCCCCchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 014790 190 FAQSSFTVASIFEGIFWFLLPASLIVINDIAAYIFGFFFGRTPLI-KLSPKKTWEGFIGASVATITSAFVLANIMGRFQW 268 (418)
Q Consensus 190 ~~~s~~~i~~~~~G~~w~i~~~~~V~~nDi~AY~~G~~fGK~kL~-~iSPkKTwEGfIGG~i~t~i~~~i~~~~l~~~~~ 268 (418)
.|....++.+.++..||+++|..||.|||||.. ++||||||||++||++.+++++.+++ ++++++
T Consensus 171 ------------~~~ll~iflli~~q~nDV~QYvwGk~fGk~Ki~P~vSPnKTveGl~GGilt~~~~~~~l~-~lTp~~- 236 (303)
T COG4589 171 ------------GGALLVIFLLILTELNDVAQYVWGKSFGKRKIVPKVSPNKTVEGLIGGILTTMIASAILG-LLTPLN- 236 (303)
T ss_pred ------------ccchHHHHHHHHHHHHHHHHHHHhhhcCCcccCCCcCCcchHHHHhhhHHHHHHHHHHHH-HhCCCc-
Confidence 222234555668899999999999999999998 69999999999999999999999887 444321
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCc
Q 014790 269 LTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSI 348 (418)
Q Consensus 269 ~~cp~~~~~~~~~~c~~~~~f~~~~~~~~~~~~~~~i~i~~~~~~~lil~l~asl~a~fGDL~eS~~KR~~gIKDsG~lI 348 (418)
.+|+++.|+..++.|.+||++.|++||+.||||+|++|
T Consensus 237 ------------------------------------------~lqa~~~~~~I~l~GF~GdlvmSaiKRd~gvKD~G~li 274 (303)
T COG4589 237 ------------------------------------------TLQALLAGLLIGLSGFCGDLVMSAIKRDVGVKDSGKLL 274 (303)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCcccccC
Confidence 16899999999999999999999999999999999999
Q ss_pred CCCcchhhhhhhhhhHHHHHHHHHHHh
Q 014790 349 PGHGGITDRMDCQMVMAVFAYIYHQSF 375 (418)
Q Consensus 349 PGHGGiLDRfDsll~~~~f~y~y~~~f 375 (418)
|||||+|||+||++|+||..+.+++.+
T Consensus 275 ~GHGGiLDR~DSL~FtAPiffh~~ry~ 301 (303)
T COG4589 275 PGHGGILDRVDSLIFTAPIFFHFIRYC 301 (303)
T ss_pred CCCccHHHHHHHHHHhhhHHHHHHHHh
Confidence 999999999999999999998888765
No 6
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=100.00 E-value=1.4e-47 Score=373.97 Aligned_cols=257 Identities=28% Similarity=0.458 Sum_probs=172.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014790 46 SFLVRAYSTVWMIAGFVLIVYMGHLYITAMVVVIQIFMARELFNLLRKAHEERDLPGFRMLNWHFFFTAMLFVYGRILSQ 125 (418)
Q Consensus 46 ~~~~R~is~ivli~~~i~ii~~G~~~~~~lv~~i~~~~~~E~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 125 (418)
++++|++++.++++.+...++.|++++.+++.++++.+.+|++.+.+.+....+.......++...+ ......
T Consensus 1 ~~~~r~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-- 73 (265)
T COG0575 1 MLKQRVITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAGPLILGLPIDLGLVL-----LDGRRL-- 73 (265)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH-----HHHHHH--
Confidence 5789999999999888888888899999999999999999999998865432221111111111110 000000
Q ss_pred HHhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHH-HHHHHH-hhhhHHh-hh-h
Q 014790 126 RLVNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMI-LIVVFA-QSSFTVA-SI-F 201 (418)
Q Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~l~~~~~v~fvl~L~~~~~~~~~~~~~~~~~~-l~~v~~-~s~~~i~-~~-~ 201 (418)
..+.. .. .......+..+ ...... .+.+....+.... .++... .+..... .. +
T Consensus 74 ------~~~~~--~~--------~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (265)
T COG0575 74 ------LGDGK--ET--------LLGFLLGFLLG-----LVLLGV--IYYLSDSLFKLFGLLYVGVGLLALLPFRLGVLY 130 (265)
T ss_pred ------hhhHH--HH--------HHHHHHHHHHH-----HHHHHh--hhhHHhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Confidence 00000 00 00000000111 000000 1111111121111 111111 1111111 11 6
Q ss_pred hhhHHHHHhhHHHHhhhHHHHHHhhhcCCCCCc-ccCCCCchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCc
Q 014790 202 EGIFWFLLPASLIVINDIAAYIFGFFFGRTPLI-KLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGW 280 (418)
Q Consensus 202 ~G~~w~i~~~~~V~~nDi~AY~~G~~fGK~kL~-~iSPkKTwEGfIGG~i~t~i~~~i~~~~l~~~~~~~cp~~~~~~~~ 280 (418)
+|..|.++++.+||+||++||++||.|||||+. ++|||||||||+||++++++++.......+..
T Consensus 131 ~g~~~~l~l~~~vw~~Di~Ayf~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~~~~~~~~~-------------- 196 (265)
T COG0575 131 SGLILLLLLFLGVWAGDIGAYFVGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVLVIFLLSSL-------------- 196 (265)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHHHHHHHhhh--------------
Confidence 899999999999999999999999999999998 69999999999999999999988876543210
Q ss_pred cccCCCCCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCcCCCcchhhhhhh
Q 014790 281 LHCDPGPLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDC 360 (418)
Q Consensus 281 ~~c~~~~~f~~~~~~~~~~~~~~~i~i~~~~~~~lil~l~asl~a~fGDL~eS~~KR~~gIKDsG~lIPGHGGiLDRfDs 360 (418)
.+..++.+++++++++++|+||++||.+||++||||||++||||||+|||+||
T Consensus 197 ---------------------------~~~~~~~~~l~~~~~l~~~lGDL~eS~iKR~~gvKDsg~liPGHGGilDR~Ds 249 (265)
T COG0575 197 ---------------------------ILNIWTLLILGLLLVLTSQLGDLFESYIKRLLGIKDSGWLIPGHGGILDRFDS 249 (265)
T ss_pred ---------------------------hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCcCCCCCCcCcccccHhh
Confidence 01237889999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHh
Q 014790 361 QMVMAVFAYIYHQSF 375 (418)
Q Consensus 361 ll~~~~f~y~y~~~f 375 (418)
++++ ++|+|...+
T Consensus 250 l~~~--~~~~~~~~~ 262 (265)
T COG0575 250 LLFV--AVYLFLLLF 262 (265)
T ss_pred HHHH--HHHHHHHHH
Confidence 9999 777776544
No 7
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=100.00 E-value=2.8e-47 Score=365.80 Aligned_cols=258 Identities=33% Similarity=0.502 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014790 48 LVRAYSTVWMIAGFVLIVYMGHLYITAMVVVIQIFMARELFNLLRKAHEERDLPGFRMLNWHFFFTAMLFVYGRILSQRL 127 (418)
Q Consensus 48 ~~R~is~ivli~~~i~ii~~G~~~~~~lv~~i~~~~~~E~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~ 127 (418)
|+|++++++++++++.+++.|++++..++++++..+.+|+.++.++..+++..+......++++.......+.....+..
T Consensus 1 k~Ri~t~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (259)
T PF01148_consen 1 KQRIITAIILIPIFILLLFLGPWYFLLLVAVIIFLGFWELFRLFRIKSRSKFRLIIRILSWIFFLILFLFFYLRWLIPYF 80 (259)
T ss_pred CEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhhHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 57999999999999999999999999999999999999999998877655444433334444443333322221111000
Q ss_pred hhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHh-hhhHHhhhhhhhHH
Q 014790 128 VNTVTSDKFLYQFVSSLIKYHMVICYFLYISGFVWFILTLKKKMYKYQFSQYAWTHMILIVVFAQ-SSFTVASIFEGIFW 206 (418)
Q Consensus 128 ~~~~~~~~~~~~~l~~~~~~~~~i~~~l~~~~~v~fvl~L~~~~~~~~~~~~~~~~~~l~~v~~~-s~~~i~~~~~G~~w 206 (418)
.. .........+ +... +.+..+...+...+.+.... ......+...+..+
T Consensus 81 ---------------------~~---~~~~~~~~~~-l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (259)
T PF01148_consen 81 ---------------------FA---TILIIALLLF-LVLG----ERRIRRIISTLFGLIYFGIFLLLLLIFFWFFGPPL 131 (259)
T ss_pred ---------------------HH---HHHHHhhhHH-hhhc----chHHHHHHHHHHHHHHHhHHHHHHHhhhhccchHH
Confidence 00 0000000111 1111 11112222222222222211 12233455678888
Q ss_pred HHHhhHHHHhhhHHHHHHhhhcCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCC
Q 014790 207 FLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPG 286 (418)
Q Consensus 207 ~i~~~~~V~~nDi~AY~~G~~fGK~kL~~iSPkKTwEGfIGG~i~t~i~~~i~~~~l~~~~~~~cp~~~~~~~~~~c~~~ 286 (418)
.+..+.+++.+|++||++||.||||+..++||||||||++||++++.+++.++.++....
T Consensus 132 ~~~~i~~~~~gD~~A~l~G~~fGk~~~~~~sp~KT~EGsi~~~i~~~i~~~~~~~~~~~~-------------------- 191 (259)
T PF01148_consen 132 ALIGILILGIGDSFAYLVGRRFGKHLAPKISPKKTWEGSIAGFISSFIISFLLLYYLSSF-------------------- 191 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCCCCHHHHhHHHHHHHHHHHHHHHHhcch--------------------
Confidence 899999999999999999999999933479999999999999999999988877653210
Q ss_pred CCCCCCCCCCCCCCCccccccchhHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCcCCCcchhhhhhhhhhHHH
Q 014790 287 PLFKPESFPLPGWLPWKEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAV 366 (418)
Q Consensus 287 ~~f~~~~~~~~~~~~~~~i~i~~~~~~~lil~l~asl~a~fGDL~eS~~KR~~gIKDsG~lIPGHGGiLDRfDsll~~~~ 366 (418)
. ...++.+++++++++++++||++||.+||++||||||++||||||++||+||+++++|
T Consensus 192 -----------------~----~~~~~~~~~~~~~~i~~~~gdl~~S~~KR~~~iKD~g~lipghGg~lDr~d~~l~~~~ 250 (259)
T PF01148_consen 192 -----------------F----LSWWQAILISLLASIVEAFGDLFESAIKRDAGIKDSGNLIPGHGGILDRFDSLLFAAP 250 (259)
T ss_pred -----------------h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCcCCcccchHhHHHHHH
Confidence 0 1137889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 014790 367 FAYIYHQSF 375 (418)
Q Consensus 367 f~y~y~~~f 375 (418)
+.|++++.|
T Consensus 251 ~~~~~~~~f 259 (259)
T PF01148_consen 251 VFYILLKIF 259 (259)
T ss_pred HHHHHHHHC
Confidence 999999876
No 8
>PRK04032 hypothetical protein; Provisional
Probab=99.95 E-value=1.4e-27 Score=214.60 Aligned_cols=102 Identities=25% Similarity=0.380 Sum_probs=87.2
Q ss_pred Hhhhc-CCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCc
Q 014790 224 FGFFF-GRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPW 302 (418)
Q Consensus 224 ~G~~f-GK~kL~~iSPkKTwEGfIGG~i~t~i~~~i~~~~l~~~~~~~cp~~~~~~~~~~c~~~~~f~~~~~~~~~~~~~ 302 (418)
.||.| ++||+ +||||||||++||++++++++.+++++.. .. .
T Consensus 22 ~g~~~~dg~~i--iSP~KTwEG~iGGv~~~~l~~~~~~~~~~-~~---------------------------------~- 64 (159)
T PRK04032 22 FGKTFVDGRRI--LGDGKTWRGLIGGILFGTLVGLIQNLLVP-AY---------------------------------I- 64 (159)
T ss_pred CCCcCCCCCee--CCCCCcHHHhHHHHHHHHHHHHHHHHHHc-cc---------------------------------h-
Confidence 47888 66666 99999999999999999999988875421 00 0
Q ss_pred cccccchhHHHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCcCCCcchhhhhhhhhhHHHHHHHHHH
Q 014790 303 KEITILPVQWHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYHQ 373 (418)
Q Consensus 303 ~~i~i~~~~~~~lil~l~asl~a~fGDL~eS~~KR~~gIKDsG~lIPGHGGiLDRfDsll~~~~f~y~y~~ 373 (418)
. ..++++++|++++++|++|||+||.+||++|||| |+.+| +|||+||+++++|+.|++..
T Consensus 65 ~------~~~~~~~~g~li~v~~~~GDL~eS~iKR~~gVKD-g~~iP----iLDRiDsll~a~p~~~l~~~ 124 (159)
T PRK04032 65 G------ALGVAIILAFLLSFGALLGDMLGSFIKRRLGLER-GAPAP----LLDQLDFVVGALLFAYLVAP 124 (159)
T ss_pred h------HHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCC-cCccc----chhhhHHHHHHHHHHHHHHh
Confidence 0 1257899999999999999999999999999999 99998 99999999999999999885
No 9
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=98.94 E-value=3e-09 Score=98.02 Aligned_cols=97 Identities=25% Similarity=0.415 Sum_probs=71.8
Q ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCCccccCCCCCCCCCCCCCCCCCCccccccchhHHHHH
Q 014790 236 LSPKKTWEGFIGASVATITSAFVLANIMGRFQWLTCPRKDLATGWLHCDPGPLFKPESFPLPGWLPWKEITILPVQWHAL 315 (418)
Q Consensus 236 iSPkKTwEGfIGG~i~t~i~~~i~~~~l~~~~~~~cp~~~~~~~~~~c~~~~~f~~~~~~~~~~~~~~~i~i~~~~~~~l 315 (418)
+=.+|||||+++|.+++++++.+.+.... . +... ........+.+
T Consensus 44 lGdgKTwrG~i~gvl~g~l~g~i~~~l~~-~-------~~~~---------------------------~~~~~~~~~~~ 88 (175)
T PF01864_consen 44 LGDGKTWRGFIGGVLAGTLVGIIQGLLLP-L-------SIFA---------------------------LYFYGSLFFNL 88 (175)
T ss_pred cCCCCeEEeeeHHHHHHHHHHHHHHHHhh-h-------cccc---------------------------cccccchHHHH
Confidence 66899999999999999999987654321 1 0000 00001124667
Q ss_pred HHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCcCCCcchhhhhhhhhhHHHHHHHHH
Q 014790 316 CLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYH 372 (418)
Q Consensus 316 il~l~asl~a~fGDL~eS~~KR~~gIKDsG~lIPGHGGiLDRfDsll~~~~f~y~y~ 372 (418)
.+++..++.+..||+.-|-+||..|++. |.-.| ++|.+|+.+....+.+++.
T Consensus 89 ~~g~ll~~gamlGDl~~SFIKRRlgi~~-G~~ap----~lDQldf~lgall~~~~~~ 140 (175)
T PF01864_consen 89 LLGFLLGLGAMLGDLPGSFIKRRLGIPR-GAPAP----GLDQLDFVLGALLLLYLFA 140 (175)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhcCCCC-CCcCc----cchhHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999985 44444 5899999999888877643
No 10
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=97.85 E-value=7.1e-05 Score=71.04 Aligned_cols=51 Identities=25% Similarity=0.204 Sum_probs=44.4
Q ss_pred HHHHhhhHHHHHHhhhcCCCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 014790 212 SLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLANIMG 264 (418)
Q Consensus 212 ~~V~~nDi~AY~~G~~fGK~kL~~iSPkKTwEGfIGG~i~t~i~~~i~~~~l~ 264 (418)
++.|| |+.|=.+||.||+.|.- +.|||+|.|.||.+.++++.++.+.+++.
T Consensus 164 Llswc-Dt~AdtvGRKfG~~tpk-~aknKSlAGSIgaft~Gvf~c~vy~gyf~ 214 (269)
T KOG4453|consen 164 LLSWC-DTIADTVGRKFGSTTPK-YAKNKSLAGSIGAFTFGVFICIVYLGYFS 214 (269)
T ss_pred HHHHh-hhHHHHHhhhccccCCC-cCCCccccchHHHHHHHHHHHHHHHHHHh
Confidence 35677 99999999999998864 89999999999999999999888766543
No 11
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=97.43 E-value=0.00056 Score=65.37 Aligned_cols=48 Identities=27% Similarity=0.316 Sum_probs=41.0
Q ss_pred HHHHhhhHHHHHHhhhcCCCCCcccCCCCchhHHHHHHHHHHHHHHHHH
Q 014790 212 SLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLA 260 (418)
Q Consensus 212 ~~V~~nDi~AY~~G~~fGK~kL~~iSPkKTwEGfIGG~i~t~i~~~i~~ 260 (418)
.+....|..|=.+|+.+||||. +.++||||||.+.+++++.+++.++.
T Consensus 121 ~~l~~GD~lAsiiG~~~G~~~~-~~~~~KSleGSla~fi~~~l~~~~~~ 168 (216)
T COG0170 121 LVLALGDGLASIIGKRYGRHKR-ILGNGKSLEGSLAFFIASFLVLLVLY 168 (216)
T ss_pred HHHHHhhHHHHHhCcccCcccc-ccCCCCchhhhHHHHHHHHHHHHHHH
Confidence 3456789999999999999933 49999999999999999998876544
No 12
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=94.03 E-value=0.048 Score=56.92 Aligned_cols=46 Identities=30% Similarity=0.361 Sum_probs=40.1
Q ss_pred HHHhhhHHHHHHhhhcCCCCCcccCCCCchhHHHHHHHHHHHHHHHHH
Q 014790 213 LIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASVATITSAFVLA 260 (418)
Q Consensus 213 ~V~~nDi~AY~~G~~fGK~kL~~iSPkKTwEGfIGG~i~t~i~~~i~~ 260 (418)
++=+.|+.|-++|+.+||++-.+- |||.||-+.++++..++.++.-
T Consensus 418 alGiGDTmASiiG~r~G~~RW~~T--kKTlEGT~Afivs~~iv~~ll~ 463 (510)
T KOG2468|consen 418 ALGIGDTMASIIGKRYGRIRWSGT--KKTLEGTLAFIVSSFIVCLLLL 463 (510)
T ss_pred eeccchHHHHHHhhhhcceecCCC--cceeehhhHHHHHHHHHHHHHH
Confidence 345789999999999999998866 9999999999999888777654
No 13
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=76.99 E-value=68 Score=33.79 Aligned_cols=44 Identities=20% Similarity=0.044 Sum_probs=36.9
Q ss_pred HHHhhHHHHhhhHHHHHHhhhcCCCCCcccCCCCchhHHHHHHH
Q 014790 207 FLLPASLIVINDIAAYIFGFFFGRTPLIKLSPKKTWEGFIGASV 250 (418)
Q Consensus 207 ~i~~~~~V~~nDi~AY~~G~~fGK~kL~~iSPkKTwEGfIGG~i 250 (418)
+.+.++-|.++|.++-.-++-+++++....+|||+||+..-++.
T Consensus 270 ~~i~~s~vL~~~~~~~cp~~d~~t~~~~~c~p~~~F~~~~y~lp 313 (432)
T KOG1440|consen 270 FGILFSYVLGHYTFFTCPVKDFSTTPLLSCEPKPLFEPQTYGLP 313 (432)
T ss_pred HHHHHHHHhccCeEEEecccccCCCCccccCcccccCcceecCC
Confidence 34455568899999999999999999779999999999876643
No 14
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=66.71 E-value=42 Score=32.45 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=38.2
Q ss_pred HHHHhhhHHHHHHhhhcCCCCCc-----ccCCC----CchhHHHHHHHHHHHHHHHHH
Q 014790 212 SLIVINDIAAYIFGFFFGRTPLI-----KLSPK----KTWEGFIGASVATITSAFVLA 260 (418)
Q Consensus 212 ~~V~~nDi~AY~~G~~fGK~kL~-----~iSPk----KTwEGfIGG~i~t~i~~~i~~ 260 (418)
......||.|-=.|...+++|.. ++.|. =|++|...|++++.+.+....
T Consensus 114 ~A~a~aDTwASEiG~ls~~~P~lItt~k~V~~Gt~GgVS~lGt~as~~Ga~~Ia~~~~ 171 (226)
T PF01940_consen 114 IAAANADTWASEIGVLSKGPPRLITTFKRVPPGTSGGVSLLGTLASLAGALLIALVAF 171 (226)
T ss_pred HHHHhhhHHHHhhhhhcCCCCeEeeCCcCCCCCCCCeechHHHHHHHHHHHHHHHHHH
Confidence 34667899999999999988752 24333 489999999999998887754
No 15
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=60.70 E-value=58 Score=31.79 Aligned_cols=46 Identities=22% Similarity=0.408 Sum_probs=35.7
Q ss_pred HHHhhhHHHHHHhhhcCCCCC-c----ccCC----CCchhHHHHHHHHHHHHHHH
Q 014790 213 LIVINDIAAYIFGFFFGRTPL-I----KLSP----KKTWEGFIGASVATITSAFV 258 (418)
Q Consensus 213 ~V~~nDi~AY~~G~~fGK~kL-~----~iSP----kKTwEGfIGG~i~t~i~~~i 258 (418)
.....||+|-=.|+..+|+|. + ++.| .=|+||-+.+++++.+.+..
T Consensus 120 A~a~aDT~ASEiG~ls~~~p~lItt~k~V~~GT~GgVS~~Gt~As~~Ga~~I~~~ 174 (237)
T TIGR00297 120 ATALSDTMASEIGKAYGKNPRLITTLQRVEPGTDGAISVEGTLAGFAGALAIALL 174 (237)
T ss_pred HHHHcchHHHhhhhccCCCCeEeecCccCCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 456789999999999999773 2 2444 34799999999999888843
No 16
>COG1836 Predicted membrane protein [Function unknown]
Probab=58.94 E-value=43 Score=32.76 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=36.0
Q ss_pred HHHhhhHHHHHHhhhcCCCCC-c----ccCCC----CchhHHHHHHHHHHHHHHHH
Q 014790 213 LIVINDIAAYIFGFFFGRTPL-I----KLSPK----KTWEGFIGASVATITSAFVL 259 (418)
Q Consensus 213 ~V~~nDi~AY~~G~~fGK~kL-~----~iSPk----KTwEGfIGG~i~t~i~~~i~ 259 (418)
.+..+||+|-=+|+.+||+|. + ++-|. =|++|-.-|++++.+.+.+.
T Consensus 129 Ata~aDT~ASEiG~~~~~~p~lITtfkrV~~Gt~GaVS~~GelAav~Ga~iIal~~ 184 (247)
T COG1836 129 ATANADTLASEIGKAYGKRPRLITTFKRVEPGTSGAVSLVGELAAVAGAFIIALLS 184 (247)
T ss_pred HHHhhhHHHHHHhHhhCCCeEEEEeeeEcCCCCCCccchhhhHHHHHHHHHHHHHH
Confidence 467889999999999999874 2 24443 47888888888888776653
No 17
>TIGR00994 3a0901s05TIC20 chloroplast protein import component, Tic20 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic20 protein.
Probab=55.14 E-value=34 Score=33.73 Aligned_cols=62 Identities=23% Similarity=0.185 Sum_probs=36.6
Q ss_pred CCCCCCchhhhccccCCCCCccccccCCCccccCChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Q 014790 6 NTSAPTTPRLRHRRRSNEAIPDATKANGSHLLVHDRNKYKSFLVRAYSTVWMIAGFVLIVYMG 68 (418)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~is~ivli~~~i~ii~~G 68 (418)
|.-.++-|.++.+|++++.++.+ |.+-+.---++-.+|.+++.|+.+.+....-..-.+-.|
T Consensus 75 ~~~~~~~p~~~~~~~~~~~pra~-~~~~~~~~~p~~~~kp~~w~RilA~LpYLLPL~dal~fg 136 (267)
T TIGR00994 75 NGLPPTAPGLPTHRRSIEPPRAA-KDDFSKFRFPPMTEKPRWWWRTLACVPYLIPLHISWMYA 136 (267)
T ss_pred CCCcccCCcchhccCCCCCcchh-cccccccCCCccccCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 33345556666677777766655 333333223445667788899999887754444444444
No 18
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=40.74 E-value=34 Score=35.98 Aligned_cols=38 Identities=34% Similarity=0.551 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCcCCCc
Q 014790 312 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 352 (418)
Q Consensus 312 ~~~lil~l~asl~a~fGDL~eS~~KR~~gIKDsG~lIPGHG 352 (418)
+-++++|++++++..+ ..+.+|+..|+-|.=+.+|.||
T Consensus 281 ~~A~iiGii~g~i~~~---a~~~lk~~l~~DD~ld~f~vHG 318 (409)
T COG0004 281 WGALIIGLIAGVICYF---AVKLLKKKLGVDDALDVFGVHG 318 (409)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHhcCCCCcccceeccc
Confidence 5688889988887665 5788999999999999999994
No 19
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=38.43 E-value=92 Score=26.60 Aligned_cols=17 Identities=35% Similarity=0.391 Sum_probs=14.2
Q ss_pred HcCCHHHHHHHHHHHHH
Q 014790 392 TALTYEEQKALYMKLGE 408 (418)
Q Consensus 392 ~~l~~~~~~~l~~~l~~ 408 (418)
..|||||+++|.+++.|
T Consensus 88 e~l~~eE~~~L~~eiee 104 (104)
T PF11460_consen 88 EELSPEELEALQAEIEE 104 (104)
T ss_pred HhCCHHHHHHHHHHhcC
Confidence 46999999999988753
No 20
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=36.35 E-value=28 Score=36.57 Aligned_cols=38 Identities=34% Similarity=0.587 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCcCCCc
Q 014790 312 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 352 (418)
Q Consensus 312 ~~~lil~l~asl~a~fGDL~eS~~KR~~gIKDsG~lIPGHG 352 (418)
+.++++|++++++..+|- ..+||.++|-|--+.+|=||
T Consensus 280 ~~A~viG~iag~~~~~~~---~~l~~~~~iDD~~~~~~vHg 317 (403)
T TIGR00836 280 WGAIIIGLVAGVLCYLAV---SKLKKKLKIDDPLDAFAVHG 317 (403)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHcCCCCCcccchhhh
Confidence 678999999999888765 34788899999999999884
No 21
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=36.25 E-value=2.1e+02 Score=23.93 Aligned_cols=33 Identities=18% Similarity=0.174 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCcCC
Q 014790 316 CLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPG 350 (418)
Q Consensus 316 il~l~asl~a~fGDL~eS~~KR~~gIKDsG~lIPG 350 (418)
+++++.+++..+|=++-|+--|.++. +++.+|+
T Consensus 49 ii~FI~giil~lG~~i~s~ygr~C~~--s~~~~~~ 81 (92)
T PF05767_consen 49 IICFILGIILTLGIVIFSMYGRYCRP--SSKVIDN 81 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCC--CCCcCcc
Confidence 36777888889999999999888876 5555554
No 22
>TIGR01597 PYST-B Plasmodium yoelii subtelomeric family PYST-B. This model represents a paralogous family of Plasmodium yoelii genes preferentially located in the subtelomeric regions of the chromosomes. There are no obvious homologs to these genes in any other organism.
Probab=32.27 E-value=2e+02 Score=28.15 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 014790 45 KSFLVRAYSTVWMIAGFVLIVYMGHLYITAMVVVIQ 80 (418)
Q Consensus 45 ~~~~~R~is~ivli~~~i~ii~~G~~~~~~lv~~i~ 80 (418)
+..+.-+..+++++.+++.++..|..++.++++...
T Consensus 195 K~~~kli~~~l~~i~~~~~i~isG~~~l~~l~i~~~ 230 (255)
T TIGR01597 195 KLVKKLIVRCLTFIVIVCSILVSGPVYLLALIIPSL 230 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 333344455555555555566668776665555443
No 23
>PRK10666 ammonium transporter; Provisional
Probab=31.27 E-value=56 Score=34.62 Aligned_cols=38 Identities=29% Similarity=0.396 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCcCCCc
Q 014790 312 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 352 (418)
Q Consensus 312 ~~~lil~l~asl~a~fGDL~eS~~KR~~gIKDsG~lIPGHG 352 (418)
+.++++|++++++..+|- ..+||.++|-|--+.+|=||
T Consensus 304 ~~A~iiG~vag~v~~~~~---~~l~~~~~iDD~~~a~~vHg 341 (428)
T PRK10666 304 GGALIIGVVAGLAGLWGV---TMLKRWLRVDDPCDVFGVHG 341 (428)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHhcCCCCCCcCccHhhh
Confidence 678999999999988764 34788899999999999994
No 24
>PF01741 MscL: Large-conductance mechanosensitive channel, MscL; InterPro: IPR001185 Mechanosensitive ion channels (MscL) play a critical role in transducing physical stresses at the cell membrane into an electrochemical response. MscL is a protein which forms a channel organised as a homopentamer, with each subunit containing two transmembrane regions []. Prokaryotes harbor a large-conductance mechanosensitive channel (gene mscL) that opens in response to stretch forces in the membrane lipid bilayer and may participate in the regulation of osmotic pressure changes within the cell [].; GO: 0005216 ion channel activity, 0006810 transport, 0016021 integral to membrane; PDB: 3HZQ_A 2OAR_A.
Probab=31.16 E-value=1.7e+02 Score=25.81 Aligned_cols=80 Identities=13% Similarity=0.217 Sum_probs=41.3
Q ss_pred hhhHHHHHhhhcCCCCccCC---CcCCCcc--------hhhhhhhhhhHHHHHHHHHHHhcc---CCCCCHHHHHHHHHH
Q 014790 327 FGGFFASGFKRAFKIKDFGD---SIPGHGG--------ITDRMDCQMVMAVFAYIYHQSFIV---PQSFRVEMILEQILT 392 (418)
Q Consensus 327 fGDL~eS~~KR~~gIKDsG~---lIPGHGG--------iLDRfDsll~~~~f~y~y~~~fi~---~~~~~~~~~~~~~~~ 392 (418)
..|+....+--..|-.|+++ .++||+| .++.+=+.++++.++|+..+.+-+ ++... +. ..
T Consensus 35 V~dii~Pli~~~~g~~~~~~~~~~~~g~~~~~~i~yG~Fl~a~I~FlIiA~vvFlivk~~nk~~~~~~~~-~~-----~~ 108 (128)
T PF01741_consen 35 VNDIIMPLIGLLFGGPDFSDLFIVLSGPAGAVVIPYGAFLNALINFLIIAFVVFLIVKPINKLKKKEEKE-EA-----EA 108 (128)
T ss_dssp HHHCHHHHHHHSCS-S--EE----TTS-SS-EEE-HCHHHHHHHHHHHHHHHHHHCHHHHHHCHHTT-S----------H
T ss_pred HHHHHHHHHHHhcCCCCcccceeeeeccCCcceeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cc-----CC
Confidence 34566655555455555555 4567654 455555666777666665544332 22111 10 01
Q ss_pred cCCHHHHHHHHHHHHHHHhhc
Q 014790 393 ALTYEEQKALYMKLGEILQER 413 (418)
Q Consensus 393 ~l~~~~~~~l~~~l~~~~~~~ 413 (418)
=.++++.++++++++.+.+|
T Consensus 109 -~~~~~~~~ll~eIrdlL~~q 128 (128)
T PF01741_consen 109 -PAPKTCEELLTEIRDLLKKQ 128 (128)
T ss_dssp ---HHHHHHHHHHHHHHHHH-
T ss_pred -CCCCchHHHHHHHHHHHhcC
Confidence 22457889999999998875
No 25
>PF04868 PDE6_gamma: Retinal cGMP phosphodiesterase, gamma subunit; InterPro: IPR006952 Retinal rod and cone cGMP phosphodiesterases function as the effector enzymes in the vertebrate visual transduction cascade. This family represents the inhibitory gamma subunit [], which is also expressed outside retinal tissues and has been shown to interact with the G-protein-coupled receptor kinase 2 signalling system to regulate the epidermal growth factor- and thrombin-dependent stimulation of p42/p44 mitogen-activated protein kinase in human embryonic kidney 293 cells [].; GO: 0004114 3',5'-cyclic-nucleotide phosphodiesterase activity, 0030553 cGMP binding, 0007601 visual perception; PDB: 2JU4_A 1FQJ_C 3JWR_D.
Probab=31.14 E-value=29 Score=27.93 Aligned_cols=18 Identities=44% Similarity=0.837 Sum_probs=12.9
Q ss_pred CCCCccCCCcCCCcchhh
Q 014790 339 FKIKDFGDSIPGHGGITD 356 (418)
Q Consensus 339 ~gIKDsG~lIPGHGGiLD 356 (418)
-|+|-||+-|||+-|+-+
T Consensus 41 kGvkGf~~~ipgmeglg~ 58 (83)
T PF04868_consen 41 KGVKGFGDDIPGMEGLGT 58 (83)
T ss_dssp SSSS--TTSSSSSTT-SH
T ss_pred CcccCccCcCcccccccC
Confidence 489999999999999844
No 26
>PRK02868 hypothetical protein; Provisional
Probab=29.88 E-value=92 Score=30.57 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=14.5
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 014790 386 ILEQILTALTYEEQKALYMK 405 (418)
Q Consensus 386 ~~~~~~~~l~~~~~~~l~~~ 405 (418)
+.+ +.+|||+|||..+++.
T Consensus 60 l~~-~v~~ms~eqq~~ll~~ 78 (245)
T PRK02868 60 LFE-LVQNMSPEQQQILLKA 78 (245)
T ss_pred HHH-HHHhCCHHHHHHHHHH
Confidence 444 4457999999999874
No 27
>PF11283 DUF3084: Protein of unknown function (DUF3084); InterPro: IPR021435 This bacterial family of proteins has no known function.
Probab=28.26 E-value=1.5e+02 Score=24.06 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=15.8
Q ss_pred HhhhcCCCCCc--ccCCCCc
Q 014790 224 FGFFFGRTPLI--KLSPKKT 241 (418)
Q Consensus 224 ~G~~fGK~kL~--~iSPkKT 241 (418)
.|+..||+++. .+-||.|
T Consensus 23 iG~kvGKkrlslFgLRPr~T 42 (79)
T PF11283_consen 23 IGSKVGKKRLSLFGLRPRYT 42 (79)
T ss_pred HHHHHhHHHhhhhcCCCccc
Confidence 68899999874 7999998
No 28
>PRK10847 hypothetical protein; Provisional
Probab=28.19 E-value=41 Score=32.03 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=18.5
Q ss_pred HHHHhhhHHHHHHhhhcCCCCC
Q 014790 212 SLIVINDIAAYIFGFFFGRTPL 233 (418)
Q Consensus 212 ~~V~~nDi~AY~~G~~fGK~kL 233 (418)
.-....|..+|..||.+|++.+
T Consensus 80 ~Ga~lG~~i~Y~lGr~~G~~~l 101 (219)
T PRK10847 80 IAAIVGDAVNYTIGRLFGEKLF 101 (219)
T ss_pred HHHHHHHHHHHHHHHHhCHHHh
Confidence 3467889999999999998765
No 29
>TIGR03092 SASP_sspI small, acid-soluble spore protein I. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. It is a minor SASP (small, acid-soluble spore protein) designated SspI. The gene in Bacillus subtilis previously was designated ysfA.
Probab=27.46 E-value=87 Score=24.49 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=24.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 014790 383 VEMILEQILTALTYEEQKALYMKLGEIL 410 (418)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~ 410 (418)
++.++..+-++++++||.++++.|.+.+
T Consensus 37 LGVlFE~~W~~~~~~ek~~m~~~l~~~l 64 (65)
T TIGR03092 37 LGVLFEAIWKHANEQEKDEMLETLEQGV 64 (65)
T ss_pred cHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 5667888888999999999999998765
No 30
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=27.41 E-value=67 Score=33.79 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCcCCCc
Q 014790 312 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 352 (418)
Q Consensus 312 ~~~lil~l~asl~a~fGDL~eS~~KR~~gIKDsG~lIPGHG 352 (418)
+.++++|++++++..++-- ++|..+|-|--+.+|=||
T Consensus 294 ~~A~iiG~iag~v~~~~~~----~~~~~~iDD~~~~~~vHg 330 (404)
T TIGR03644 294 LAATLIGAVGGVIVVFSIV----LLDKLKIDDPVGAISVHG 330 (404)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhCCCCCCcCchHhhh
Confidence 7899999999999987764 345699999999999995
No 31
>KOG4753 consensus Predicted membrane protein [Function unknown]
Probab=27.33 E-value=1.7e+02 Score=25.59 Aligned_cols=13 Identities=23% Similarity=0.297 Sum_probs=7.6
Q ss_pred CCCCCCCCCCCch
Q 014790 1 MQSENNTSAPTTP 13 (418)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (418)
|.+|...++.++|
T Consensus 1 m~p~rdv~~~~~d 13 (124)
T KOG4753|consen 1 MSPERDVGVGTRD 13 (124)
T ss_pred CCCcCcCceeccC
Confidence 4556555666655
No 32
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=27.28 E-value=82 Score=24.65 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 014790 383 VEMILEQILTALTYEEQKALYMKLGEIL 410 (418)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~ 410 (418)
++.++..+-++++++||.++++.|.+.|
T Consensus 38 LGVlFE~~W~~~~~~ek~~m~~~l~~~l 65 (65)
T PF14098_consen 38 LGVLFEVIWKNSDESEKQEMVNTLEQGL 65 (65)
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 5667788888899999999999998753
No 33
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=23.12 E-value=2.8e+02 Score=19.62 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 014790 50 RAYSTVWMIAGFVLIVYMGHLYITAMVVVIQIFMARELFNLLRKAH 95 (418)
Q Consensus 50 R~is~ivli~~~i~ii~~G~~~~~~lv~~i~~~~~~E~~~l~~~~~ 95 (418)
-...+++|+++++.++ +|- +.++-|.+++..+..
T Consensus 4 Sl~fa~iMVPVvma~i-lgl-----------IyGlGevfN~iS~~G 37 (41)
T PF10766_consen 4 SLAFAVIMVPVVMALI-LGL-----------IYGLGEVFNLISKIG 37 (41)
T ss_pred HHHHHHHHHHHHHHHH-HHH-----------HHHHHHHHHHHHhcC
Confidence 4456777877766554 353 356778888877654
No 34
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=22.93 E-value=3e+02 Score=20.34 Aligned_cols=40 Identities=13% Similarity=0.116 Sum_probs=23.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 014790 43 KYKSFLVRAYSTVWMIAGFVLIVYMGHLYITAMVVVIQIFM 83 (418)
Q Consensus 43 ~~~~~~~R~is~ivli~~~i~ii~~G~~~~~~lv~~i~~~~ 83 (418)
-+++.+-|++-+++...+.++.+..|-+- .++++++..++
T Consensus 3 ~~~~~~~~iiG~~~G~ila~l~l~~GF~~-tl~i~~~~~iG 42 (51)
T PF10031_consen 3 FWKNHRGKIIGGLIGLILALLILTFGFWK-TLFILLFAAIG 42 (51)
T ss_pred HHHHCcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 35667778888877766666666666443 33334443443
No 35
>PF09720 Unstab_antitox: Putative addiction module component; InterPro: IPR013406 This entry defines several short bacterial proteins, typically about 75 amino acids long, which are always found as part of a pair (at least) of small genes. The other protein in the pair always belongs to a family of plasmid stabilisation proteins (IPR007712 from INTERPRO). It is likely that this protein and its partner comprise some form of addiction module - a pair of genes consisting of a stable toxin and an unstable antitoxin which mediate programmed cell death [] - although these gene pairs are usually found on the bacterial main chromosome.
Probab=22.92 E-value=84 Score=22.98 Aligned_cols=20 Identities=30% Similarity=0.311 Sum_probs=17.7
Q ss_pred cCCHHHHHHHHHHHHHHHhh
Q 014790 393 ALTYEEQKALYMKLGEILQE 412 (418)
Q Consensus 393 ~l~~~~~~~l~~~l~~~~~~ 412 (418)
+||++||..|++.|-++|..
T Consensus 1 ~L~~~er~~L~e~L~~sl~~ 20 (54)
T PF09720_consen 1 QLPPEERAELAEELWDSLDD 20 (54)
T ss_pred CcCHHHHHHHHHHHHHHhcc
Confidence 58999999999999988865
No 36
>PF07136 DUF1385: Protein of unknown function (DUF1385); InterPro: IPR010787 This family contains a number of hypothetical bacterial proteins of unknown function approximately 300 residues in length. Some family members are predicted to be metal-dependent.
Probab=20.38 E-value=2.4e+02 Score=27.62 Aligned_cols=64 Identities=17% Similarity=0.255 Sum_probs=35.9
Q ss_pred cCCCccccCChhhhhhHHHHHHHHHHHHHHHHHHHH---H--hhH----HHHHHHHHHHHHHHHHHHHHhhhc
Q 014790 31 ANGSHLLVHDRNKYKSFLVRAYSTVWMIAGFVLIVY---M--GHL----YITAMVVVIQIFMARELFNLLRKA 94 (418)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~R~is~ivli~~~i~ii~---~--G~~----~~~~lv~~i~~~~~~E~~~l~~~~ 94 (418)
.++.+....+-+|.+.+-.|.-|+.+++.+++.++. . ++. ...++...+.....+|+++...+.
T Consensus 122 E~g~~Ltvenvrk~sr~HpRCGTsFl~~vl~vsI~vf~~~~~~~~~~r~~~ri~llPvvagisYEiir~~~~~ 194 (236)
T PF07136_consen 122 EAGEELTVENVRKYSRLHPRCGTSFLLIVLIVSILVFSFIGWPSLWWRILSRILLLPVVAGISYEIIRWAGRS 194 (236)
T ss_pred cCCCCCCHHHHHhcCCcCCCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344444444456666666777776554333332222 1 222 244666667777789999988764
Done!