Query 014790
Match_columns 418
No_of_seqs 137 out of 1445
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 17:52:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fqj_C Retinal ROD rhodopsin-s 41.5 9 0.00031 25.8 1.0 17 340-356 1-17 (42)
2 2l9b_A MRNA 3'-END-processing 37.0 59 0.002 26.8 5.5 33 381-413 36-68 (109)
3 2zo4_A Metallo-beta-lactamase 36.9 42 0.0014 31.3 5.4 70 326-398 210-284 (317)
4 3b9w_A Ammonium transporter fa 30.9 21 0.00072 36.1 2.3 41 312-352 260-301 (407)
5 3hnn_A Putative diflavin flavo 29.0 27 0.00092 32.0 2.5 36 320-356 201-236 (262)
6 2b2h_A AMT-1, ammonium transpo 28.6 22 0.00076 35.8 2.0 36 312-351 270-305 (399)
7 3ech_A MEXR, multidrug resista 26.3 73 0.0025 25.7 4.5 31 383-413 112-142 (142)
8 3hd6_A Ammonium transporter RH 25.5 30 0.001 35.8 2.3 44 312-355 309-355 (490)
9 2ju4_A GMP-PDE gamma, retinal 25.4 28 0.00095 27.0 1.5 18 339-356 45-62 (87)
10 4ad9_A Lactb2, beta-lactamase- 25.3 49 0.0017 30.5 3.7 72 327-400 178-256 (289)
11 4dik_A Flavoprotein; TM0755, e 22.8 35 0.0012 34.2 2.2 39 317-356 207-245 (410)
12 1zav_U 50S ribosomal protein L 22.4 1.4E+02 0.0048 18.8 4.2 26 382-408 2-27 (30)
13 1dd4_C 50S ribosomal protein L 20.8 86 0.0029 21.1 3.1 27 382-409 2-28 (40)
14 2fhx_A SPM-1; metallo-beta-lac 20.1 26 0.00088 31.3 0.5 28 328-357 200-227 (246)
No 1
>1fqj_C Retinal ROD rhodopsin-sensitive CGMP 3',5'- cyclic phosphodiesterase gamma-subunit...; RGS9, transducin, effector, pdegamma, G protein; HET: GDP; 2.02A {Bos taurus} SCOP: j.51.1.1
Probab=41.46 E-value=9 Score=25.77 Aligned_cols=17 Identities=41% Similarity=0.917 Sum_probs=11.0
Q ss_pred CCCccCCCcCCCcchhh
Q 014790 340 KIKDFGDSIPGHGGITD 356 (418)
Q Consensus 340 gIKDsG~lIPGHGGiLD 356 (418)
|+|-||+-||||=|.--
T Consensus 1 gv~gf~~~ipGmeglgt 17 (42)
T 1fqj_C 1 GVQGFGDDIPGMEGLGT 17 (42)
T ss_dssp ----CTTCCSCCTTCCH
T ss_pred CCcccccccccccccCC
Confidence 68999999999987643
No 2
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=36.96 E-value=59 Score=26.81 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc
Q 014790 381 FRVEMILEQILTALTYEEQKALYMKLGEILQER 413 (418)
Q Consensus 381 ~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~ 413 (418)
..+|+.+......|++++..+++.++|++..+.
T Consensus 36 ~ap~~~IS~~Laslpp~Ql~eiL~qmK~~~~~n 68 (109)
T 2l9b_A 36 TTPAMMISSELAKKPKEVQLKFLQKFQEWTRAH 68 (109)
T ss_dssp SCHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CchHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence 457845555556799999999999999998764
No 3
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus}
Probab=36.93 E-value=42 Score=31.26 Aligned_cols=70 Identities=11% Similarity=0.025 Sum_probs=34.2
Q ss_pred hhhhHHHHHhhhcCCCCccCCCcCCCcchhhh----hhhhhhHHHHHHHHHHHhccCCCCCHHHHHHHHHH-cCCHHH
Q 014790 326 PFGGFFASGFKRAFKIKDFGDSIPGHGGITDR----MDCQMVMAVFAYIYHQSFIVPQSFRVEMILEQILT-ALTYEE 398 (418)
Q Consensus 326 ~fGDL~eS~~KR~~gIKDsG~lIPGHGGiLDR----fDsll~~~~f~y~y~~~fi~~~~~~~~~~~~~~~~-~l~~~~ 398 (418)
...+..+|. +|-.+. |...++||||+..+. ++..+----=-+=.+...+ .+..|++++.+.+.. .+++.+
T Consensus 210 ~~~~~~~sl-~~l~~l-~~~~v~pgHg~~~~~~~~~i~~~~~~~~~~~~~i~~~l-~~~~t~~ei~~~~~~~~~~~~~ 284 (317)
T 2zo4_A 210 PLKDFLRSL-DRLADL-GARVAYAGHFGPIADVRQRAEELKAHHQARLEALLALL-DGPKTAWELSLHLFPQELDPAG 284 (317)
T ss_dssp HHHHHHHHH-HHHHTS-CCSEEEESSSSCBSCHHHHHHHHHHHHHHHHHHHHHHC-SSCBCHHHHHHHHCC-------
T ss_pred hHHHHHHHH-HHHhcC-CCCEEECCCCCccCCHHHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHhhcccChhH
Confidence 345566653 555555 557899999988753 3333211000000111122 445678888887764 455433
No 4
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=30.86 E-value=21 Score=36.06 Aligned_cols=41 Identities=24% Similarity=0.253 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhhhhhh-HHHHHhhhcCCCCccCCCcCCCc
Q 014790 312 WHALCLGLFASIIAPFGG-FFASGFKRAFKIKDFGDSIPGHG 352 (418)
Q Consensus 312 ~~~lil~l~asl~a~fGD-L~eS~~KR~~gIKDsG~lIPGHG 352 (418)
+.++++|++++++..+|- ++...+||..||-|.=+.+|=||
T Consensus 260 ~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHg 301 (407)
T 3b9w_A 260 VGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHG 301 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecch
Confidence 789999999999999886 45567889999999999999994
No 5
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural GE consortium, NESG, NSR435A, DFA5, electron transport; 1.80A {Nostoc SP} PDB: 4fek_A
Probab=28.99 E-value=27 Score=32.01 Aligned_cols=36 Identities=17% Similarity=0.342 Sum_probs=27.0
Q ss_pred HHHHhhhhhhHHHHHhhhcCCCCccCCCcCCCcchhh
Q 014790 320 FASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITD 356 (418)
Q Consensus 320 ~asl~a~fGDL~eS~~KR~~gIKDsG~lIPGHGGiLD 356 (418)
...+.++...-...+++|.... |.-.++||||.+.+
T Consensus 201 ~~~~~~~~~~~~~~sl~~l~~L-~~~~i~PgHG~~~~ 236 (262)
T 3hnn_A 201 FNCLMAPHAIHVEAALEKISDL-QVRLYAVGHGPLVR 236 (262)
T ss_dssp HHHHTGGGHHHHHHHHHHHTTS-CCSEEEESSSSEES
T ss_pred HHHHhhhhHHHHHHHHHHHhCC-CCCEEECCCCcccc
Confidence 3455666666667778887776 56889999999986
No 6
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=28.64 E-value=22 Score=35.79 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCcCCC
Q 014790 312 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGH 351 (418)
Q Consensus 312 ~~~lil~l~asl~a~fGDL~eS~~KR~~gIKDsG~lIPGH 351 (418)
+.++++|++++++..++- .+|+..|+-|.=+.+|=|
T Consensus 270 ~~A~iiG~iag~i~~~~~----~l~~kl~iDD~l~a~~vH 305 (399)
T 2b2h_A 270 KGAIVIGLVAGIVCYLAM----DFRIKKKIDESLDAWAIH 305 (399)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHTTCCCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHcCCCCCCCceecc
Confidence 689999999999999886 588889999998888888
No 7
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=26.26 E-value=73 Score=25.70 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=25.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc
Q 014790 383 VEMILEQILTALTYEEQKALYMKLGEILQER 413 (418)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~ 413 (418)
.+...+.+...++++|+..+.+.|+++..++
T Consensus 112 ~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~~ 142 (142)
T 3ech_A 112 MSRVHDELFAPLTPVEQATLVHLLDQCLAAQ 142 (142)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 3455666667899999999999999998875
No 8
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=25.54 E-value=30 Score=35.85 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhhhhhh-HHHHHhhhcCCCCccCCCcCCC--cchh
Q 014790 312 WHALCLGLFASIIAPFGG-FFASGFKRAFKIKDFGDSIPGH--GGIT 355 (418)
Q Consensus 312 ~~~lil~l~asl~a~fGD-L~eS~~KR~~gIKDsG~lIPGH--GGiL 355 (418)
+.++++|++++++..+|- ++...+|+.+||-|.=+.+|=| ||++
T Consensus 309 ~~AliIG~iaG~i~~~~~~~l~~~l~~kl~iDD~lgv~~vHGv~Gi~ 355 (490)
T 3hd6_A 309 YGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGII 355 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHCCCCccccchHHhhHHHHH
Confidence 789999999999999984 4456789999999999999999 4554
No 9
>2ju4_A GMP-PDE gamma, retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit gamma...; intrinsic disordered protein; HET: RCY; NMR {Bos taurus}
Probab=25.43 E-value=28 Score=26.97 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=14.7
Q ss_pred CCCCccCCCcCCCcchhh
Q 014790 339 FKIKDFGDSIPGHGGITD 356 (418)
Q Consensus 339 ~gIKDsG~lIPGHGGiLD 356 (418)
-|||-||+-||||-|+--
T Consensus 45 kGvkGfgddipgmeglgt 62 (87)
T 2ju4_A 45 KGVQGCGDDIPGMEGCGT 62 (87)
T ss_dssp SSSSCCCCSSCSSSSCSH
T ss_pred CCcccccccccccccccC
Confidence 478999999999988643
No 10
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta lactamase, mitochondria; 2.60A {Homo sapiens}
Probab=25.34 E-value=49 Score=30.45 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=35.8
Q ss_pred hhhHHHHHhhhcCCCCccCCCcCCCcchhh----hhhhhhhHHHHHHHHHHHhcc---CCCCCHHHHHHHHHHcCCHHHH
Q 014790 327 FGGFFASGFKRAFKIKDFGDSIPGHGGITD----RMDCQMVMAVFAYIYHQSFIV---PQSFRVEMILEQILTALTYEEQ 399 (418)
Q Consensus 327 fGDL~eS~~KR~~gIKDsG~lIPGHGGiLD----RfDsll~~~~f~y~y~~~fi~---~~~~~~~~~~~~~~~~l~~~~~ 399 (418)
..+..+| ++|....+ ...++||||+..+ |++..+=-----+=.+...+. ....|++++.+.+...++++..
T Consensus 178 ~~~~~~s-l~~l~~l~-~~~v~pgHg~~~~~~~~~i~~~~~~~~~r~~~i~~~l~~~~~~~~t~~ei~~~~~~~~p~~l~ 255 (289)
T 4ad9_A 178 LYDYMNS-LKELLKIK-ADIIYPGHGPVIHNAEAKIQQYISHRNIREQQILTLFRENFEKSFTVMELVKIIYKNTPENLH 255 (289)
T ss_dssp HHHHHHH-HHHHHHHT-CSEEEESSSSCBSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCHHHHHHHHTTTSCGGGH
T ss_pred HHHHHHH-HHHHHcCC-CCEEEeCCCChhcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHhcCCHHHH
Confidence 3444444 34433332 2389999998864 344333111111111111221 2357788888888766775444
Q ss_pred H
Q 014790 400 K 400 (418)
Q Consensus 400 ~ 400 (418)
.
T Consensus 256 ~ 256 (289)
T 4ad9_A 256 E 256 (289)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=22.79 E-value=35 Score=34.15 Aligned_cols=39 Identities=18% Similarity=0.407 Sum_probs=33.2
Q ss_pred HHHHHHHhhhhhhHHHHHhhhcCCCCccCCCcCCCcchhh
Q 014790 317 LGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITD 356 (418)
Q Consensus 317 l~l~asl~a~fGDL~eS~~KR~~gIKDsG~lIPGHGGiLD 356 (418)
.--++.+++|++..+..++||-.+. |-.-+.||||-+..
T Consensus 207 ~~yy~~i~~p~~~~v~~~L~kl~~L-di~~I~P~HGpi~r 245 (410)
T 4dik_A 207 TKYIVTVIGHYKNYILEGAEKLSSL-KIKALLPGHGLIWK 245 (410)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTS-CCSEEEESSSCBBS
T ss_pred HHHHHhhccchHHHHHHHHHHHhCC-CCCEEecCCcchhh
Confidence 3456788999999999999998777 67789999999983
No 12
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=22.38 E-value=1.4e+02 Score=18.78 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014790 382 RVEMILEQILTALTYEEQKALYMKLGE 408 (418)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~~~l~~~l~~ 408 (418)
+.+.+++.+.. ||.-|-.+|++.|.+
T Consensus 2 ~~~~iie~i~~-lTvlEl~eLvk~lEe 27 (30)
T 1zav_U 2 TIDEIIEAIEK-LTVSELAELVKKLED 27 (30)
T ss_dssp CHHHHHHHHHH-SBHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 46889999975 999999999988876
No 13
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=20.75 E-value=86 Score=21.11 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 014790 382 RVEMILEQILTALTYEEQKALYMKLGEI 409 (418)
Q Consensus 382 ~~~~~~~~~~~~l~~~~~~~l~~~l~~~ 409 (418)
+.+++++.|. +||.-|-.+|.+.|++-
T Consensus 2 ~~~~iie~i~-~lTvlE~~eLvk~leek 28 (40)
T 1dd4_C 2 TIDEIIEAIE-KLTVSELAELVKKLEDK 28 (40)
T ss_dssp HHHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHH-hCcHHHHHHHHHHHHHH
Confidence 4678999997 59999999999998874
No 14
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=20.09 E-value=26 Score=31.33 Aligned_cols=28 Identities=32% Similarity=0.343 Sum_probs=19.1
Q ss_pred hhHHHHHhhhcCCCCccCCCcCCCcchhhh
Q 014790 328 GGFFASGFKRAFKIKDFGDSIPGHGGITDR 357 (418)
Q Consensus 328 GDL~eS~~KR~~gIKDsG~lIPGHGGiLDR 357 (418)
.+..+| ++|-... |.-.++||||+..++
T Consensus 200 ~~~~~s-l~~l~~l-~~~~i~pgHg~~~~~ 227 (246)
T 2fhx_A 200 KAWPDS-ARRLKKF-DAKIVIPGHGEWGGP 227 (246)
T ss_dssp TTHHHH-HHHGGGS-CCSEEEESBSCCBST
T ss_pred HHHHHH-HHHHHhC-CCCEEECCCCCcCCH
Confidence 344444 4565555 677899999998774
Done!