Query 014790
Match_columns 418
No_of_seqs 137 out of 1445
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 17:52:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014790.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014790hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zavu1 a.108.1.1 (U:1-30) Rib 62.4 6.3 0.00046 23.1 4.2 27 381-408 1-27 (30)
2 d2p97a1 d.157.1.12 (A:1-200) H 49.3 2.3 0.00017 35.8 1.0 32 331-362 160-196 (200)
3 d1lnwa_ a.4.5.28 (A:) MexR rep 28.7 29 0.0021 26.8 4.5 31 383-413 111-141 (141)
4 d1vmea2 d.157.1.3 (A:1-250) RO 28.6 12 0.00085 31.7 2.2 35 320-355 198-232 (250)
5 d1u7ga_ f.44.1.1 (A:) Ammonium 28.6 7.6 0.00055 36.5 0.9 38 312-352 280-317 (383)
6 d1tlha_ a.150.1.1 (A:) Anti-si 26.6 20 0.0014 26.4 2.8 29 380-409 47-75 (89)
7 d1ycga2 d.157.1.3 (A:2-250) Ni 26.5 10 0.00076 32.0 1.4 36 320-355 195-231 (249)
8 d2fbha1 a.4.5.28 (A:8-144) Tra 24.7 32 0.0023 26.2 4.1 30 383-412 104-133 (137)
9 d2q0ia1 d.157.1.14 (A:1-298) Q 23.1 8.5 0.00062 33.7 0.1 24 333-356 203-226 (298)
10 d3broa1 a.4.5.28 (A:3-137) Tra 21.4 38 0.0028 25.6 3.9 29 384-412 107-135 (135)
11 d3deua1 a.4.5.28 (A:2-141) Tra 21.2 49 0.0036 25.1 4.6 29 384-412 108-136 (140)
12 d1uptb_ a.193.1.1 (B:) Golgi a 20.5 40 0.0029 22.9 3.2 34 372-406 13-46 (58)
13 d1m98a1 a.175.1.1 (A:2-175) Or 20.1 38 0.0028 28.0 3.7 24 384-408 64-87 (174)
No 1
>d1zavu1 a.108.1.1 (U:1-30) Ribosomal protein L7/12, oligomerisation (N-terminal) domain {Thermotoga maritima [TaxId: 2336]}
Probab=62.39 E-value=6.3 Score=23.09 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014790 381 FRVEMILEQILTALTYEEQKALYMKLGE 408 (418)
Q Consensus 381 ~~~~~~~~~~~~~l~~~~~~~l~~~l~~ 408 (418)
.++|.+...|.+ |+..|-.+|+.+|.+
T Consensus 1 m~~eeiv~aiek-ltvaelaelvk~led 27 (30)
T d1zavu1 1 MTIDEIIEAIEK-LTVSELAELVKKLED 27 (30)
T ss_dssp CCHHHHHHHHHH-SBHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-hhHHHHHHHHHHHHh
Confidence 368999999986 999999999998875
No 2
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]}
Probab=49.26 E-value=2.3 Score=35.78 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=24.2
Q ss_pred HHHHhhhcCCCCccCCCcCCCcch-----hhhhhhhh
Q 014790 331 FASGFKRAFKIKDFGDSIPGHGGI-----TDRMDCQM 362 (418)
Q Consensus 331 ~eS~~KR~~gIKDsG~lIPGHGGi-----LDRfDsll 362 (418)
....++|-...+|+-.++||||.. -+|++.++
T Consensus 160 ~~~sl~rl~~l~~~~~i~pgHG~~~~~~~~~rl~~l~ 196 (200)
T d2p97a1 160 VVASVRRLAALEKVEAVLVGDGWSVFRDGRDRLKELV 196 (200)
T ss_dssp HHHHHHHHHTCTTCCEEEESBBCCBCSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEECCCCchHhcCHHHHHHHHH
Confidence 346688988999999999999954 45665543
No 3
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=28.69 E-value=29 Score=26.80 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=25.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc
Q 014790 383 VEMILEQILTALTYEEQKALYMKLGEILQER 413 (418)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~~ 413 (418)
.+...+.+...++++|+..+.+.|++++..|
T Consensus 111 ~~~~~~~~~~~ls~~e~~~l~~~L~kl~a~~ 141 (141)
T d1lnwa_ 111 MSRVHDELFAPLTPVEQATLVHLLDQCLAAQ 141 (141)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc
Confidence 3556677778899999999999999988653
No 4
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=28.64 E-value=12 Score=31.67 Aligned_cols=35 Identities=20% Similarity=0.471 Sum_probs=24.9
Q ss_pred HHHHhhhhhhHHHHHhhhcCCCCccCCCcCCCcchh
Q 014790 320 FASIIAPFGGFFASGFKRAFKIKDFGDSIPGHGGIT 355 (418)
Q Consensus 320 ~asl~a~fGDL~eS~~KR~~gIKDsG~lIPGHGGiL 355 (418)
.....++.-+-...++||-.+. |...++||||=++
T Consensus 198 ~~~~~~~~~~~~~~sl~~l~~l-~~~~I~PGHGpi~ 232 (250)
T d1vmea2 198 IVTVIGHYKNYILEGAEKLSSL-KIKALLPGHGLIW 232 (250)
T ss_dssp HHHHHGGGHHHHHHHHHHHHTS-CCSEEEESSSCBB
T ss_pred hcccccccHHHHHHHHHHHHCC-CCCEEECCCChhH
Confidence 3445556666667778886555 5678999999776
No 5
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=28.60 E-value=7.6 Score=36.52 Aligned_cols=38 Identities=29% Similarity=0.417 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhhcCCCCccCCCcCCCc
Q 014790 312 WHALCLGLFASIIAPFGGFFASGFKRAFKIKDFGDSIPGHG 352 (418)
Q Consensus 312 ~~~lil~l~asl~a~fGDL~eS~~KR~~gIKDsG~lIPGHG 352 (418)
+.++++|++++++..++- ..+||..++-|--+.+|-||
T Consensus 280 ~~A~~iG~i~g~i~~~~~---~~l~~~~~iDD~~~~~~vHg 317 (383)
T d1u7ga_ 280 GGALIIGVVAGLAGLWGV---TMLKRLLRVDDPCDVFGVHG 317 (383)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHCSCCGGGHHHHHH
T ss_pred hhHHHHHhhccHHHHHHH---HHHHhhcccccccceEeehh
Confidence 678999999999988773 35788889999999999994
No 6
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4 [TaxId: 10665]}
Probab=26.57 E-value=20 Score=26.42 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 014790 380 SFRVEMILEQILTALTYEEQKALYMKLGEI 409 (418)
Q Consensus 380 ~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~ 409 (418)
.++--..-+.+ +.||.+|+.+++++.++=
T Consensus 47 eft~~sFrqm~-~~Lt~~er~elie~FneG 75 (89)
T d1tlha_ 47 KLNQNSFRKIV-SELTQEDKKTLIDEFNEG 75 (89)
T ss_dssp ECCHHHHHHHH-HSSCHHHHHHHHHHCHHH
T ss_pred HHHHhHHHHHH-HHCCHHHHHHHHHHHHhH
Confidence 45555555545 569999999999998873
No 7
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]}
Probab=26.50 E-value=10 Score=32.02 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=26.1
Q ss_pred HHHHhhhhhhHHHHHhhhcCCC-CccCCCcCCCcchh
Q 014790 320 FASIIAPFGGFFASGFKRAFKI-KDFGDSIPGHGGIT 355 (418)
Q Consensus 320 ~asl~a~fGDL~eS~~KR~~gI-KDsG~lIPGHGGiL 355 (418)
+..+.+++.+-+.+.+||-..+ -|-..++||||.++
T Consensus 195 ~~~~~~~~~~~~~~~l~~l~~l~l~~~~i~PgHGpv~ 231 (249)
T d1ycga2 195 YANILMPFSNLITKKLDEIQKINLAIKTIAPSHGIIW 231 (249)
T ss_dssp HHHHTGGGHHHHHHHHHHHHHTTCCCSEEEESSSCBB
T ss_pred chhccccCHHHHHHHHHHHHccCCCCCEEEeCCCchH
Confidence 4556778888888888886543 23345889999987
No 8
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=24.72 E-value=32 Score=26.17 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Q 014790 383 VEMILEQILTALTYEEQKALYMKLGEILQE 412 (418)
Q Consensus 383 ~~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 412 (418)
...+.+.+...|++||+..+.+.|.+++.+
T Consensus 104 ~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~ 133 (137)
T d2fbha1 104 AASVRNDVLTGIDESEQALCQQVLLRILAN 133 (137)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 355666777789999999999999887764
No 9
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]}
Probab=23.10 E-value=8.5 Score=33.74 Aligned_cols=24 Identities=29% Similarity=0.620 Sum_probs=17.2
Q ss_pred HHhhhcCCCCccCCCcCCCcchhh
Q 014790 333 SGFKRAFKIKDFGDSIPGHGGITD 356 (418)
Q Consensus 333 S~~KR~~gIKDsG~lIPGHGGiLD 356 (418)
.+++|-...+|--.++||||++.+
T Consensus 203 ~sl~~l~~l~~~~~i~PgHG~~~~ 226 (298)
T d2q0ia1 203 ESLERLQRLPTLLQLIPGHGGLLR 226 (298)
T ss_dssp HHHHHHHTSSCCSEEEESSSCEEE
T ss_pred HHHHHHHCCCCCCEEECCCCCccC
Confidence 345776666665568999999874
No 10
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=21.44 E-value=38 Score=25.59 Aligned_cols=29 Identities=21% Similarity=0.168 Sum_probs=24.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Q 014790 384 EMILEQILTALTYEEQKALYMKLGEILQE 412 (418)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 412 (418)
+...+.+...+++||+..+.+.|+++++|
T Consensus 107 ~~~~~~~~~~l~~ee~~~~~~~L~~l~~N 135 (135)
T d3broa1 107 DSDQSQMTSGLNKEEVVFLEKILKRMIES 135 (135)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 55666677789999999999999998876
No 11
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=21.24 E-value=49 Score=25.07 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Q 014790 384 EMILEQILTALTYEEQKALYMKLGEILQE 412 (418)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~l~~~l~~~~~~ 412 (418)
+...+.+...++++|+..+.+.|+++..|
T Consensus 108 ~~~~~~~~~~l~~ee~~~~~~~L~~i~~n 136 (140)
T d3deua1 108 HKTRGEILAGISSEEIELLIKLIAKLEHN 136 (140)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 45666677789999999999999887765
No 12
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.52 E-value=40 Score=22.88 Aligned_cols=34 Identities=3% Similarity=0.178 Sum_probs=27.5
Q ss_pred HHHhccCCCCCHHHHHHHHHHcCCHHHHHHHHHHH
Q 014790 372 HQSFIVPQSFRVEMILEQILTALTYEEQKALYMKL 406 (418)
Q Consensus 372 ~~~fi~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l 406 (418)
+.++..+++.++.+|+..+.+ .+++|-+.++++=
T Consensus 13 feYMmG~E~~tlaKVi~av~k-F~~~Q~q~iL~kE 46 (58)
T d1uptb_ 13 FEYMMGRETKTMAKVITTVLK-FPDDQTQKILERE 46 (58)
T ss_dssp HHHHTTSSHHHHHHHHHHHTT-CCHHHHHHHHHHH
T ss_pred HHHHcCcchhHHHHHHHHHHh-CCHHHHHHHHHHH
Confidence 345556788889999999986 9999999988753
No 13
>d1m98a1 a.175.1.1 (A:2-175) Orange carotenoid protein, N-terminal domain {Cyanobacteria (Arthrospira maxima) [TaxId: 129910]}
Probab=20.09 E-value=38 Score=28.01 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=20.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 014790 384 EMILEQILTALTYEEQKALYMKLGE 408 (418)
Q Consensus 384 ~~~~~~~~~~l~~~~~~~l~~~l~~ 408 (418)
+.++++|. +||.+||.++.+-|-+
T Consensus 64 e~ll~qik-~ms~~EQlq~MrDL~~ 87 (174)
T d1m98a1 64 ENTLQEIR-QMTPLQQTQAMCDLAN 87 (174)
T ss_dssp HHHHHHHH-HSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHHh
Confidence 66899997 5999999999887644
Done!