BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014791
         (418 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1USD|A Chain A, Human Vasp Tetramerisation Domain L352m
          Length = 45

 Score = 31.6 bits (70), Expect = 0.87,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 327 PTESERSLMERVRQELKHELK---QGYKEKIVDIREEILRKR 365
           P+ S+ S ++RV+QEL  E+K   Q  KE+I++   + LRKR
Sbjct: 1   PSSSDYSDLQRVKQELMEEVKKELQKVKEEIIEAFVQELRKR 42


>pdb|1USE|A Chain A, Human Vasp Tetramerisation Domain
          Length = 45

 Score = 31.2 bits (69), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 3/42 (7%)

Query: 327 PTESERSLMERVRQELKHELK---QGYKEKIVDIREEILRKR 365
           P+ S+ S ++RV+QEL  E+K   Q  KE+I++   + LRKR
Sbjct: 1   PSSSDYSDLQRVKQELLEEVKKELQKVKEEIIEAFVQELRKR 42


>pdb|2DMN|A Chain A, The Solution Structure Of The Homeobox Domain Of Human
           Homeobox Protein Tgif2lx
          Length = 83

 Score = 29.3 bits (64), Expect = 4.6,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPT 392
           K+R G LP ++  +L+ W   H    YP+
Sbjct: 8   KKRKGNLPAESVKILRDWMYKHRFKAYPS 36


>pdb|1X2N|A Chain A, Solution Structure Of The Homeobox Domain Of Human
           Homeobox Protein Pknox1
          Length = 73

 Score = 28.9 bits (63), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPT 392
           K + G LP   T+V++SW   H   PYPT
Sbjct: 8   KNKRGVLPKHATNVMRSWLFQHIGHPYPT 36


>pdb|2IP4|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide Synthetase
           From Thermus Thermophilus Hb8
 pdb|2IP4|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide Synthetase
           From Thermus Thermophilus Hb8
          Length = 417

 Score = 28.1 bits (61), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 308 NLFDGSLEGPDTMGFGPLIPTESERSLMERVRQELKHELKQGYKEKIVDIR 358
            L DG  +GP T G G + P   + + + RV +E+   L +G + + V  R
Sbjct: 210 RLLDGD-QGPXTGGXGAVAPYPXDEATLRRVEEEILGPLVRGLRAEGVVYR 259


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.131    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,931,696
Number of Sequences: 62578
Number of extensions: 326455
Number of successful extensions: 771
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 769
Number of HSP's gapped (non-prelim): 5
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)