Query 014791
Match_columns 418
No_of_seqs 196 out of 403
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 17:53:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lk2_A Homeobox protein TGIF1; 99.4 3.3E-14 1.1E-18 117.6 1.7 48 369-416 11-68 (89)
2 2dmn_A Homeobox protein TGIF2L 99.4 2.2E-13 7.4E-18 109.1 3.1 55 363-417 7-71 (83)
3 3k2a_A Homeobox protein MEIS2; 99.3 4.8E-13 1.7E-17 103.4 3.3 51 367-417 2-62 (67)
4 1x2n_A Homeobox protein pknox1 99.2 9.6E-12 3.3E-16 96.4 3.1 55 363-417 7-71 (73)
5 1du6_A PBX1, homeobox protein 99.1 1.5E-10 5.1E-15 87.4 5.1 51 364-414 4-64 (64)
6 1b72_B Protein (PBX1); homeodo 99.0 2.2E-10 7.5E-15 91.3 3.6 53 364-416 2-64 (87)
7 1puf_B PRE-B-cell leukemia tra 98.9 3.7E-10 1.3E-14 87.4 3.3 52 364-415 2-63 (73)
8 1le8_B Mating-type protein alp 98.9 7.6E-10 2.6E-14 88.2 4.1 53 364-416 3-65 (83)
9 1mnm_C Protein (MAT alpha-2 tr 98.9 6.8E-10 2.3E-14 88.9 3.4 49 363-411 27-85 (87)
10 1k61_A Mating-type protein alp 98.8 1.6E-09 5.5E-14 80.8 4.0 46 366-411 1-56 (60)
11 1akh_A Protein (mating-type pr 98.2 8.8E-07 3E-11 66.0 3.2 45 363-410 5-59 (61)
12 2ecc_A Homeobox and leucine zi 98.0 2.2E-06 7.5E-11 68.9 3.3 45 365-412 5-59 (76)
13 2d5v_A Hepatocyte nuclear fact 98.0 3.5E-06 1.2E-10 74.2 3.9 52 360-414 94-155 (164)
14 2da4_A Hypothetical protein DK 97.9 1.9E-06 6.6E-11 67.7 0.4 52 363-414 8-70 (80)
15 1bw5_A ISL-1HD, insulin gene e 97.7 3.2E-05 1.1E-09 58.5 3.8 51 363-416 3-63 (66)
16 1wh5_A ZF-HD homeobox family p 97.6 5.9E-05 2E-09 60.0 4.4 49 363-411 17-76 (80)
17 2da3_A Alpha-fetoprotein enhan 97.5 5.9E-05 2E-09 58.7 3.5 48 363-413 17-74 (80)
18 2dmu_A Homeobox protein goosec 97.4 6.9E-05 2.4E-09 57.3 3.1 46 363-411 7-62 (70)
19 1fjl_A Paired protein; DNA-bin 97.4 8.3E-05 2.8E-09 58.4 3.1 47 363-412 18-74 (81)
20 3d1n_I POU domain, class 6, tr 97.4 8.6E-05 2.9E-09 64.8 3.1 46 363-411 93-148 (151)
21 2e1o_A Homeobox protein PRH; D 97.3 0.00011 3.8E-09 56.2 3.1 46 363-411 7-62 (70)
22 2da1_A Alpha-fetoprotein enhan 97.3 8.4E-05 2.9E-09 56.7 2.3 47 363-412 7-63 (70)
23 2dmq_A LIM/homeobox protein LH 97.3 0.00011 3.9E-09 57.3 3.0 48 363-413 7-64 (80)
24 3rkq_A Homeobox protein NKX-2. 97.3 0.0001 3.6E-09 53.6 2.6 45 363-410 2-56 (58)
25 2k40_A Homeobox expressed in E 97.3 0.00014 4.9E-09 55.1 3.3 46 364-412 2-57 (67)
26 2da2_A Alpha-fetoprotein enhan 97.3 0.00013 4.5E-09 55.6 3.1 47 363-412 7-63 (70)
27 2hdd_A Protein (engrailed home 97.3 0.00017 5.8E-09 53.7 3.6 47 362-411 2-58 (61)
28 2djn_A Homeobox protein DLX-5; 97.3 0.00017 5.7E-09 55.2 3.5 48 363-413 7-64 (70)
29 1jgg_A Segmentation protein EV 97.2 0.00021 7.2E-09 53.0 3.6 45 364-411 2-56 (60)
30 2cra_A Homeobox protein HOX-B1 97.1 0.00025 8.5E-09 54.3 3.3 48 363-413 7-64 (70)
31 1ig7_A Homeotic protein MSX-1; 97.1 0.0003 1E-08 51.7 3.4 44 364-410 1-54 (58)
32 2h1k_A IPF-1, pancreatic and d 97.1 0.00036 1.2E-08 52.3 3.6 46 363-411 3-58 (63)
33 2dms_A Homeobox protein OTX2; 97.1 0.00035 1.2E-08 54.8 3.4 46 363-411 7-62 (80)
34 1yz8_P Pituitary homeobox 2; D 97.0 0.00012 4E-09 55.8 0.2 46 363-411 3-58 (68)
35 2vi6_A Homeobox protein nanog; 97.0 0.00055 1.9E-08 51.1 3.8 47 363-412 3-59 (62)
36 1mh3_A Maltose binding-A1 home 96.9 0.00039 1.3E-08 66.0 3.2 45 364-411 366-420 (421)
37 2l7z_A Homeobox protein HOX-A1 96.9 0.00052 1.8E-08 53.1 3.1 48 363-413 7-64 (73)
38 2dmt_A Homeobox protein BARH-l 96.9 0.00051 1.7E-08 53.9 3.1 47 364-413 18-74 (80)
39 1ftt_A TTF-1 HD, thyroid trans 96.9 0.00043 1.5E-08 52.8 2.5 46 363-411 2-57 (68)
40 2dn0_A Zinc fingers and homeob 96.9 0.0006 2E-08 53.0 3.1 46 365-413 10-65 (76)
41 1zq3_P PRD-4, homeotic bicoid 96.8 0.00052 1.8E-08 52.3 2.5 47 363-412 2-58 (68)
42 2cue_A Paired box protein PAX6 96.8 0.00064 2.2E-08 53.3 3.1 46 363-411 7-62 (80)
43 1nk2_P Homeobox protein VND; h 96.8 0.0007 2.4E-08 52.8 3.1 45 364-411 10-64 (77)
44 1ahd_P Antennapedia protein mu 96.8 0.00054 1.9E-08 52.3 2.3 46 363-411 2-57 (68)
45 3a02_A Homeobox protein arista 96.8 0.00092 3.1E-08 49.6 3.4 42 367-411 3-54 (60)
46 1b8i_A Ultrabithorax, protein 96.6 0.0013 4.3E-08 52.0 3.6 47 363-412 20-76 (81)
47 1wh7_A ZF-HD homeobox family p 96.6 0.0013 4.5E-08 52.4 3.8 48 363-411 17-76 (80)
48 2cuf_A FLJ21616 protein; homeo 96.6 0.0011 3.6E-08 53.8 3.1 47 363-412 7-78 (95)
49 2m0c_A Homeobox protein arista 96.6 0.0009 3.1E-08 51.2 2.5 47 364-413 10-66 (75)
50 3a01_A Homeodomain-containing 96.6 0.0011 3.9E-08 53.7 3.1 47 363-412 17-73 (93)
51 2kt0_A Nanog, homeobox protein 96.5 0.0016 5.4E-08 51.2 3.3 46 364-412 23-78 (84)
52 1uhs_A HOP, homeodomain only p 96.5 0.0016 5.5E-08 50.0 3.1 45 365-411 3-57 (72)
53 1e3o_C Octamer-binding transcr 96.4 0.0021 7E-08 56.8 3.6 48 362-412 100-157 (160)
54 1puf_A HOX-1.7, homeobox prote 96.4 0.0022 7.4E-08 50.0 3.3 46 363-411 13-68 (77)
55 3nar_A ZHX1, zinc fingers and 96.4 0.0017 5.7E-08 52.8 2.8 48 363-413 25-82 (96)
56 1b72_A Protein (homeobox prote 96.3 0.0028 9.5E-08 51.5 3.6 47 362-411 33-89 (97)
57 2da5_A Zinc fingers and homeob 96.3 0.0035 1.2E-07 48.7 4.0 45 365-412 9-63 (75)
58 2r5y_A Homeotic protein sex co 96.2 0.0025 8.4E-08 50.8 3.1 47 362-411 27-83 (88)
59 1au7_A Protein PIT-1, GHF-1; c 96.2 0.0032 1.1E-07 55.0 3.8 46 363-411 87-142 (146)
60 3a03_A T-cell leukemia homeobo 96.1 0.0039 1.3E-07 45.8 3.3 38 370-410 4-51 (56)
61 2hi3_A Homeodomain-only protei 96.1 0.0031 1.1E-07 48.6 2.9 46 364-411 3-58 (73)
62 2h8r_A Hepatocyte nuclear fact 96.1 0.0034 1.1E-07 59.4 3.6 36 363-401 142-177 (221)
63 2ly9_A Zinc fingers and homeob 95.9 0.0048 1.7E-07 47.3 3.4 45 364-411 7-61 (74)
64 2xsd_C POU domain, class 3, tr 95.9 0.004 1.4E-07 55.5 3.3 47 362-411 98-154 (164)
65 2ecb_A Zinc fingers and homeob 95.9 0.0033 1.1E-07 51.5 2.3 41 369-412 17-67 (89)
66 2e19_A Transcription factor 8; 95.7 0.008 2.8E-07 45.9 3.8 42 367-411 7-58 (64)
67 3l1p_A POU domain, class 5, tr 95.7 0.0028 9.7E-08 55.7 1.1 46 363-411 96-151 (155)
68 2dmp_A Zinc fingers and homeob 95.5 0.009 3.1E-07 48.1 3.5 39 370-411 20-68 (89)
69 3nau_A Zinc fingers and homeob 95.2 0.0071 2.4E-07 47.7 1.9 42 371-415 12-63 (66)
70 1wi3_A DNA-binding protein SAT 94.3 0.034 1.2E-06 44.6 3.7 47 363-411 7-63 (71)
71 1ic8_A Hepatocyte nuclear fact 93.3 0.022 7.6E-07 52.5 1.2 36 363-401 115-150 (194)
72 1lfb_A Liver transcription fac 93.2 0.054 1.8E-06 44.9 3.2 37 362-401 8-44 (99)
73 2l9r_A Homeobox protein NKX-3. 92.4 0.072 2.5E-06 41.5 2.7 41 370-413 11-61 (69)
74 2da6_A Hepatocyte nuclear fact 90.9 0.11 3.7E-06 43.9 2.4 36 363-401 6-41 (102)
75 2cqx_A LAG1 longevity assuranc 90.8 0.1 3.5E-06 40.5 2.0 44 365-410 10-63 (72)
76 2da7_A Zinc finger homeobox pr 85.8 0.63 2.2E-05 37.3 3.6 36 372-410 14-59 (71)
77 1x2m_A LAG1 longevity assuranc 80.7 0.64 2.2E-05 36.0 1.7 34 375-410 12-55 (64)
78 2jqq_A Conserved oligomeric go 43.4 30 0.001 32.5 5.2 38 245-284 83-120 (204)
79 1sse_B AP-1 like transcription 40.6 25 0.00085 29.1 3.7 29 156-187 20-48 (86)
80 2k6l_A Putative uncharacterize 38.5 24 0.00084 26.7 3.1 34 338-384 14-47 (51)
81 4a8j_C Elongator complex prote 32.3 17 0.00058 35.5 1.8 56 1-59 1-60 (280)
82 1xc0_A Pardaxin P-4, PA4; BEND 31.7 23 0.0008 24.2 1.8 18 177-194 6-23 (33)
83 3swk_A Vimentin; cytoskeleton, 25.1 2.3E+02 0.0077 22.7 7.0 48 236-283 20-76 (86)
84 2w9j_A Signal recognition part 22.9 40 0.0014 27.7 2.1 19 235-253 63-81 (91)
85 1e8o_B SRP14, signal recogniti 22.7 37 0.0013 28.4 2.0 18 235-252 71-88 (106)
86 1hlv_A CENP-B, major centromer 20.3 73 0.0025 25.4 3.2 43 368-411 71-130 (131)
No 1
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.41 E-value=3.3e-14 Score=117.58 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=45.9
Q ss_pred CCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccccccc
Q 014791 369 KLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSMMLI 416 (418)
Q Consensus 369 kLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~~li 416 (418)
-||++++++|++||..|..+||||++||..||+ |||+|+|+|+++++|
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 589999999999999999999999999999998 899999999998875
No 2
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.36 E-value=2.2e-13 Score=109.12 Aligned_cols=55 Identities=24% Similarity=0.436 Sum_probs=51.9
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSMMLIH 417 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~~li~ 417 (418)
++|+|+.||++++.+|..||..|..+||||.++|..||. +||+|+|+|+++.+|.
T Consensus 7 ~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 7 GKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 578899999999999999999999999999999999998 8999999999988774
No 3
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.33 E-value=4.8e-13 Score=103.39 Aligned_cols=51 Identities=24% Similarity=0.432 Sum_probs=44.0
Q ss_pred CCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccccccccc
Q 014791 367 AGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSMMLIH 417 (418)
Q Consensus 367 rGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~~li~ 417 (418)
.|+||++++.+|++||..|..+|||+..+|..||. +||.|.|+|++++++.
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 68999999999999999999999999999999998 8999999999998864
No 4
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.17 E-value=9.6e-12 Score=96.38 Aligned_cols=55 Identities=27% Similarity=0.358 Sum_probs=51.4
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSMMLIH 417 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~~li~ 417 (418)
.+|+|+.|+++...+|..||..|..+|||+.++|..||. +||.|.|+|.++++|.
T Consensus 7 ~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 7 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 467789999999999999999999999999999999998 8999999999998874
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.05 E-value=1.5e-10 Score=87.45 Aligned_cols=51 Identities=20% Similarity=0.304 Sum_probs=47.5
Q ss_pred hhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccccc
Q 014791 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSMM 414 (418)
Q Consensus 364 kKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~~ 414 (418)
+|+|..++++...+|..||..|..+|||+.++|..||. +||.|.|.|..++
T Consensus 4 rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 4 HIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 57889999999999999999999999999999999998 8999999997653
No 6
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=98.98 E-value=2.2e-10 Score=91.26 Aligned_cols=53 Identities=21% Similarity=0.343 Sum_probs=48.9
Q ss_pred hhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccccccc
Q 014791 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSMMLI 416 (418)
Q Consensus 364 kKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~~li 416 (418)
||+|..|+++...+|..||..|..+|||+.++|..||. +||.|.|.|..+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 68899999999999999999999999999999999998 899999999887654
No 7
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=98.93 E-value=3.7e-10 Score=87.41 Aligned_cols=52 Identities=21% Similarity=0.378 Sum_probs=48.2
Q ss_pred hhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccccccc
Q 014791 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSMML 415 (418)
Q Consensus 364 kKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~~l 415 (418)
||+|..++++...+|..||..|..+|||+.++|..||. +||.|.|.|..+..
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 63 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccc
Confidence 67899999999999999999999999999999999998 89999999976653
No 8
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=98.90 E-value=7.6e-10 Score=88.24 Aligned_cols=53 Identities=15% Similarity=0.339 Sum_probs=45.9
Q ss_pred hhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccccccc
Q 014791 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSMMLI 416 (418)
Q Consensus 364 kKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~~li 416 (418)
++|+..|+++...+|..||..|..+|||+.+++..||. +||.|.|+|..+..|
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 44445599999999999999999999999999999998 899999998776544
No 9
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=98.89 E-value=6.8e-10 Score=88.89 Aligned_cols=49 Identities=14% Similarity=0.348 Sum_probs=45.3
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
++|+|..|+++...+|..||..|+.+|||+.++|..||. +||.|.|+|.
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~ 85 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKE 85 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhc
Confidence 456788899999999999999999999999999999998 8999999873
No 10
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=98.85 E-value=1.6e-09 Score=80.80 Aligned_cols=46 Identities=15% Similarity=0.368 Sum_probs=43.2
Q ss_pred cCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 366 RAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 366 KrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
|+..++++...+|..||..|..+|||+.++|..||. +||.|.|.|.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~ 56 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKE 56 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccc
Confidence 578899999999999999999999999999999998 8999999874
No 11
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=98.17 E-value=8.8e-07 Score=65.97 Aligned_cols=45 Identities=7% Similarity=0.124 Sum_probs=35.8
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLR 410 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR 410 (418)
++|+|..++.+...+|..||..| |||+..++..||. +||.|.|.|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~~---~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRRK---QSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp -------CCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhC---CCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 45678889999999999999876 9999999999998 899999976
No 12
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.04 E-value=2.2e-06 Score=68.91 Aligned_cols=45 Identities=11% Similarity=0.135 Sum_probs=40.5
Q ss_pred hcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccc
Q 014791 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHS 412 (418)
Q Consensus 365 KKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~ 412 (418)
++|++++++...+|+.||.. +|||+..|+..||. +||.|.|.|.=
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~K 59 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALK 59 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHH
Confidence 47899999999999999985 49999999999998 89999997653
No 13
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=97.99 E-value=3.5e-06 Score=74.15 Aligned_cols=52 Identities=10% Similarity=0.019 Sum_probs=42.4
Q ss_pred HHHHhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccccc
Q 014791 360 EILRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSMM 414 (418)
Q Consensus 360 Ef~kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~~ 414 (418)
.-..||+|..++.+...+|..||..+ |||+..++..||. +||.|.|+|.-+.
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~---~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~ 155 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKEN---KRPSKELQITISQQLGLELSTVSNFFMNARRRSLDK 155 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHC---SSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHCcCHHHhhhcChhhhcccccc
Confidence 33457889999999999999999887 9999999999998 8999999997654
No 14
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=1.9e-06 Score=67.67 Aligned_cols=52 Identities=8% Similarity=0.138 Sum_probs=44.8
Q ss_pred HhhcCCCCccchHHHHHHHHHhc-cCCCCCCHHHHHHHHH----------Hhhcccccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSH-SKWPYPTVSPVTLLLR----------FLFKSLPLRHSMM 414 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H-~~~PYPSE~EK~~La~----------NWFiNaRrR~~~~ 414 (418)
++|+|-.|..+...+|..||..+ ..+|||+..++..||. +||.|.|.|.-+.
T Consensus 8 ~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 8 ALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 35667789999999999999888 7789999999999998 7999999876443
No 15
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=97.65 E-value=3.2e-05 Score=58.53 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=43.7
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSMMLI 416 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~~li 416 (418)
++|+|-.+..+...+|..|+.. +|||+..++..||. +||.|.|.|.-+.-|
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 3567888999999999999976 69999999999998 799999988665543
No 16
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=97.57 E-value=5.9e-05 Score=60.04 Aligned_cols=49 Identities=8% Similarity=0.040 Sum_probs=42.9
Q ss_pred HhhcCCCCccchHHHHHHHHHh-ccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQS-HSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~-H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
+||+|-.|+.+...+|..++.. |.++|||+..++..||. .||.|.|-+.
T Consensus 17 ~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~ 76 (80)
T 1wh5_A 17 RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSG 76 (80)
T ss_dssp SCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSS
T ss_pred CCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCC
Confidence 4567888999999999998874 68899999999999998 6999998764
No 17
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=97.50 E-value=5.9e-05 Score=58.69 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=41.4
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSM 413 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~ 413 (418)
+||+|-.+..+...+|..||..+ |||+..++..||. .||.|.|.|.-+
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~f~~~---~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 74 (80)
T 2da3_A 17 DKRLRTTITPEQLEILYQKYLLD---SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERK 74 (80)
T ss_dssp CTTCCSSCCTTTHHHHHHHHHHC---SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhh
Confidence 35678889999999999999765 9999999999998 799999977543
No 18
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.44 E-value=6.9e-05 Score=57.28 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=40.6
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
.+|+|-.+..+...+|..||.. .|||+..++..||. +||.|.|.|.
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 62 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKW 62 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehccccccccc
Confidence 4577888999999999999976 79999999999998 7999998764
No 19
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=97.39 E-value=8.3e-05 Score=58.45 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=40.4
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHS 412 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~ 412 (418)
++|+|-.+..+...+|..||.. +|||+..++..||. +||.|.|.|.-
T Consensus 18 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~r 74 (81)
T 1fjl_A 18 QRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLR 74 (81)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhh
Confidence 3566778999999999999865 79999999999998 79999987643
No 20
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=97.35 E-value=8.6e-05 Score=64.83 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=40.4
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
++|+|..+..+...+|..||.. +|||+..++..||. +||.|.|.|.
T Consensus 93 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~ 148 (151)
T 3d1n_I 93 KRKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTL 148 (151)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhcc
Confidence 3556778999999999999977 79999999999998 7999998763
No 21
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.33 E-value=0.00011 Score=56.25 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=40.1
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
.+|+|..+..+...+|..||.. +|||+..++..||. +||.|.|.|.
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 62 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKW 62 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhc
Confidence 3567888999999999999964 79999999999998 7999988764
No 22
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=97.32 E-value=8.4e-05 Score=56.68 Aligned_cols=47 Identities=15% Similarity=0.313 Sum_probs=40.7
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHS 412 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~ 412 (418)
.+|+|..+..+...+|..||.. .|||+..++..||. +||.|.|.|.-
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 63 (70)
T 2da1_A 7 GKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKER 63 (70)
T ss_dssp CCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHh
Confidence 3567888999999999999975 69999999999998 79999987643
No 23
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.31 E-value=0.00011 Score=57.29 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=41.3
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSM 413 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~ 413 (418)
+||+|..+..+...+|..||.. .|||+..++..||. .||.|.|.|.-+
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 64 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 64 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHH
Confidence 4677888999999999999875 58999999999998 799998876543
No 24
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=97.31 E-value=0.0001 Score=53.65 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=39.5
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLR 410 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR 410 (418)
++|+|-.+..+...+|..++. ..|||+..++..||. +||.|.|.+
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 56 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFK---QQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYK 56 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhcc
Confidence 467788899999999999884 689999999999998 799998865
No 25
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=97.29 E-value=0.00014 Score=55.09 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=40.4
Q ss_pred hhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccc
Q 014791 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHS 412 (418)
Q Consensus 364 kKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~ 412 (418)
+|+|..+..+...+|..|+. .+|||+..++..||. +||.|.|.|.-
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 57 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFR---VNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLK 57 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHh
Confidence 56788899999999999984 589999999999998 79999987743
No 26
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=97.29 E-value=0.00013 Score=55.58 Aligned_cols=47 Identities=13% Similarity=0.253 Sum_probs=40.7
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHS 412 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~ 412 (418)
++|+|-.+..+...+|..||.. .|||+..++..||. +||.|.|.|.-
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 63 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKAR 63 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHh
Confidence 3567788999999999999976 78999999999998 79999987653
No 27
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=97.29 E-value=0.00017 Score=53.74 Aligned_cols=47 Identities=19% Similarity=0.150 Sum_probs=38.0
Q ss_pred HHhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 362 ~kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
.+||+|..+..+...+|..++.. .|||+..++..||. .||-|.|.|.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 58 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKI 58 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccc
Confidence 46788899999999999999864 69999999999998 7999998764
No 28
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.27 E-value=0.00017 Score=55.25 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=41.0
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSM 413 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~ 413 (418)
.+|+|-.+..+...+|..||. .+|||+..++..||. +||.|.|.|.-+
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 64 (70)
T 2djn_A 7 GRKPRTIYSSFQLAALQRRFQ---KTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKK 64 (70)
T ss_dssp CCCSSCSSCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcc
Confidence 356778899999999999984 579999999999998 799999987543
No 29
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=97.23 E-value=0.00021 Score=53.05 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=39.1
Q ss_pred hhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 364 kKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
+|+|..+..+...+|..++.. +|||+..++..||. +||.|.|.+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 56 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKD 56 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHh
Confidence 567888999999999999865 69999999999998 7999998763
No 30
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.15 E-value=0.00025 Score=54.29 Aligned_cols=48 Identities=6% Similarity=0.059 Sum_probs=41.1
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSM 413 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~ 413 (418)
.+|+|-.+..+...+|..+|.. +|||+..++..||. +||.|.|.|.-+
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk 64 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 64 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcc
Confidence 3567788999999999999865 69999999999998 799999877543
No 31
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=97.12 E-value=0.0003 Score=51.66 Aligned_cols=44 Identities=7% Similarity=0.131 Sum_probs=38.8
Q ss_pred hhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccc
Q 014791 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLR 410 (418)
Q Consensus 364 kKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR 410 (418)
+|+|..+..+...+|..++.. .|||+..++..||. .||-|.|.+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 54 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAK 54 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhh
Confidence 467888999999999999864 69999999999998 799998865
No 32
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=97.08 E-value=0.00036 Score=52.34 Aligned_cols=46 Identities=13% Similarity=0.052 Sum_probs=39.3
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
++|+|..+..+...+|..++.. +|||+..++..||. .||-|.|.+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 58 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKW 58 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhh
Confidence 5678889999999999999864 69999999999998 7999988764
No 33
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.06 E-value=0.00035 Score=54.77 Aligned_cols=46 Identities=15% Similarity=0.203 Sum_probs=40.0
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
.+|+|-.+..+...+|..+|.. .|||+..++..||. +||.|.|.|.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~ 62 (80)
T 2dms_A 7 GRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKC 62 (80)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHh
Confidence 3567888999999999999865 69999999999998 7999988764
No 34
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=97.00 E-value=0.00012 Score=55.82 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=40.1
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
++|+|..+..+...+|..|+.. .|||+..++..||. +||.|.|.|.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 58 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKW 58 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHH
Confidence 4677888999999999999854 89999999999998 7999998764
No 35
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=96.98 E-value=0.00055 Score=51.11 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=37.3
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHS 412 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~ 412 (418)
++|+|..+..+...+|..++.. .|||+..++..||. .||-|.|.+.-
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 59 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCK 59 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCG
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchh
Confidence 4677888999999999999864 69999999999998 79999887643
No 36
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=96.93 E-value=0.00039 Score=66.04 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=37.7
Q ss_pred hhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 364 kKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
++.+..|-+..+..|..+| ..+|||++.+|..||. +||+|.|+|.
T Consensus 366 ~~~~~~~~~~q~~~Le~~f---~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~ 420 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVF---RRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS 420 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHH---HHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCC
T ss_pred hhhhhhhcchHHHHHHHHH---hcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhccccc
Confidence 4556678888888888777 4579999999999998 8999999885
No 37
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=96.90 E-value=0.00052 Score=53.09 Aligned_cols=48 Identities=6% Similarity=0.048 Sum_probs=40.8
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSM 413 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~ 413 (418)
.+|+|..+..+...+|..+|.. .|||+..++..||. .||-|.|.|.-+
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk 64 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKK 64 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHH
Confidence 3567888999999999999865 79999999999998 799998876433
No 38
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.89 E-value=0.00051 Score=53.91 Aligned_cols=47 Identities=9% Similarity=0.067 Sum_probs=39.9
Q ss_pred hhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccccc
Q 014791 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSM 413 (418)
Q Consensus 364 kKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~ 413 (418)
+|+|-.+..+...+|..+|.. .|||+..++..||. .||.|.|.|.-+
T Consensus 18 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk 74 (80)
T 2dmt_A 18 RRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKK 74 (80)
T ss_dssp CCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhc
Confidence 456777899999999999875 78999999999998 799999876543
No 39
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=96.88 E-value=0.00043 Score=52.78 Aligned_cols=46 Identities=13% Similarity=0.195 Sum_probs=40.1
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
++|+|..+..+...+|..+|. .+|||+..++..||. .||-|.|.+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~ 57 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFK---QQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKM 57 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHH---HSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHH---hCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhh
Confidence 467788899999999999986 478999999999998 7999988664
No 40
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.85 E-value=0.0006 Score=53.03 Aligned_cols=46 Identities=20% Similarity=0.126 Sum_probs=39.3
Q ss_pred hcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccccc
Q 014791 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSM 413 (418)
Q Consensus 365 KKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~ 413 (418)
+.|..+.++...+|..||.. +|||+..++..||. +||.|.|.|.-+
T Consensus 10 ~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk 65 (76)
T 2dn0_A 10 IYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRN 65 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSS
T ss_pred CCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHH
Confidence 34778999999999999954 79999999999998 799999877543
No 41
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=96.82 E-value=0.00052 Score=52.33 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=40.3
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHS 412 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~ 412 (418)
.+|+|..+..+...+|..+|. .+|||+..++..||. +||.|.|.|.-
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~k 58 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFL---QGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHK 58 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHh---cCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHH
Confidence 357788899999999998884 489999999999998 79999987643
No 42
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.81 E-value=0.00064 Score=53.34 Aligned_cols=46 Identities=15% Similarity=0.227 Sum_probs=39.7
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
.+|+|-.+..+...+|..+|. ..|||+..++..||. .||-|.|.|.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~---~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~ 62 (80)
T 2cue_A 7 GQRNRTSFTQEQIEALEKEFE---RTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKW 62 (80)
T ss_dssp SCCCCCCSCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHh---ccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHH
Confidence 356788899999999998884 589999999999998 7999988764
No 43
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=96.80 E-value=0.0007 Score=52.77 Aligned_cols=45 Identities=13% Similarity=0.176 Sum_probs=38.9
Q ss_pred hhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 364 kKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
+|+|..+..+...+|..+|.. .|||+..++..||. +||-|.|.|.
T Consensus 10 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~ 64 (77)
T 1nk2_P 10 RKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKT 64 (77)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcch
Confidence 456778899999999999864 78999999999998 7999988764
No 44
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=96.77 E-value=0.00054 Score=52.32 Aligned_cols=46 Identities=17% Similarity=0.121 Sum_probs=40.5
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
++|+|..+..+...+|..+|.. .|||+..++..||. .||-|.|.+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~ 57 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKW 57 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHH
Confidence 5678889999999999999864 68999999999998 7999988764
No 45
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=96.76 E-value=0.00092 Score=49.58 Aligned_cols=42 Identities=14% Similarity=0.083 Sum_probs=35.1
Q ss_pred CCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 367 AGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 367 rGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
|-.+..+...+|..|+.. +|||+..++..||. +||.|.|.|.
T Consensus 3 Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 54 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKW 54 (60)
T ss_dssp --CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhh
Confidence 456788889999999865 79999999999998 7999988764
No 46
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=96.65 E-value=0.0013 Score=51.99 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=38.3
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHS 412 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~ 412 (418)
++|+|..+..+...+|..+|.. .|||+..++..||. .||-|.|.|.-
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~k 76 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLK 76 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhh
Confidence 5677888999999999999865 68999999999998 79999987643
No 47
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=96.64 E-value=0.0013 Score=52.45 Aligned_cols=48 Identities=8% Similarity=0.007 Sum_probs=40.2
Q ss_pred HhhcCCCCccchHHHHHHHHHhccC--CCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSK--WPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~--~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
+||+|-.|..+...+|.. |..++. +|||+..++..||. .||.|.|-+.
T Consensus 17 ~rR~Rt~ft~~Ql~~Le~-F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~ 76 (80)
T 1wh7_A 17 TKRFRTKFTAEQKEKMLA-FAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSG 76 (80)
T ss_dssp SSCCCCCCCHHHHHHHHH-HHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCS
T ss_pred CCCCCccCCHHHHHHHHH-HHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCC
Confidence 456678899999999984 666544 99999999999998 6999998765
No 48
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=96.62 E-value=0.0011 Score=53.76 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=40.1
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH-------------------------Hhhcccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR-------------------------FLFKSLPLRHS 412 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~-------------------------NWFiNaRrR~~ 412 (418)
++|+|-.+..+...+|..||.. .|||+..++..||+ +||.|.|.|.-
T Consensus 7 ~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~k 78 (95)
T 2cuf_A 7 GRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIK 78 (95)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHH
Confidence 3566788999999999999987 89999999999875 59999887653
No 49
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=96.61 E-value=0.0009 Score=51.22 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=39.0
Q ss_pred hhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccccc
Q 014791 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSM 413 (418)
Q Consensus 364 kKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~ 413 (418)
+|+|-.+..+...+|..+|. ..|||+..++..||. .||-|.|.|.-+
T Consensus 10 rr~Rt~ft~~q~~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 66 (75)
T 2m0c_A 10 RRNRTTFTSYQLEELEKVFQ---KTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRK 66 (75)
T ss_dssp CSCSCSSCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHH---hcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHH
Confidence 45566788999999999986 468999999999998 799999877543
No 50
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=96.60 E-value=0.0011 Score=53.69 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=40.3
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHS 412 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~ 412 (418)
+||+|..+..+...+|..+|.. .|||+..++..||. .||-|.|.|.-
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~k 73 (93)
T 3a01_A 17 RKKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWR 73 (93)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhh
Confidence 3566788999999999999865 69999999999998 79999987643
No 51
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=96.50 E-value=0.0016 Score=51.18 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=39.5
Q ss_pred hhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccc
Q 014791 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHS 412 (418)
Q Consensus 364 kKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~ 412 (418)
+|+|..+..+...+|..+|.. .|||+..++..||. .||-|.|.|.-
T Consensus 23 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~k 78 (84)
T 2kt0_A 23 QKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSK 78 (84)
T ss_dssp CCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 466788999999999999864 79999999999998 79999887643
No 52
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=96.47 E-value=0.0016 Score=50.00 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=38.1
Q ss_pred hcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 365 KKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
|+|..+..+...+|..+|. ...|||+..++..||. .||-|.|.|.
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~--~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~ 57 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFN--KVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEW 57 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHH--SSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHH--ccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHH
Confidence 5677899999999998884 1379999999999998 7999998764
No 53
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=96.37 E-value=0.0021 Score=56.77 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=39.4
Q ss_pred HHhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccc
Q 014791 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHS 412 (418)
Q Consensus 362 ~kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~ 412 (418)
.+||+|..+..+...+|..+|.. .|||+..++..||. .||-|.|.|.-
T Consensus 100 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~k 157 (160)
T 1e3o_C 100 RRRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEK 157 (160)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhh
Confidence 35677889999999999999866 79999999999998 79999987643
No 54
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=96.36 E-value=0.0022 Score=49.98 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=39.2
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
.+|+|..+..+...+|..+|.. .|||+..++..||. .||-|.|.+.
T Consensus 13 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~ 68 (77)
T 1puf_A 13 TRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKM 68 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3566778899999999999864 68999999999998 7999988764
No 55
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=96.36 E-value=0.0017 Score=52.77 Aligned_cols=48 Identities=15% Similarity=0.132 Sum_probs=39.8
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSM 413 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~ 413 (418)
.+|+|..+.++...+|..+|. ..|||+..++..||. .||-|.|.+.-+
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~---~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk 82 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFV---RTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKN 82 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHH---HCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccCCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhh
Confidence 346788899999999999986 479999999999998 799999876543
No 56
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=96.26 E-value=0.0028 Score=51.45 Aligned_cols=47 Identities=6% Similarity=0.038 Sum_probs=38.2
Q ss_pred HHhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 362 ~kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
..+|+|..+..+...+|..+|. .+|||+..++..||. .||-|.|.|.
T Consensus 33 ~~rr~Rt~ft~~Ql~~Le~~F~---~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~ 89 (97)
T 1b72_A 33 SPSGLRTNFTTRQLTELEKEFH---FNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQ 89 (97)
T ss_dssp ----CCCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHh---ccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHH
Confidence 3567788899999999998884 479999999999998 7999998764
No 57
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.25 E-value=0.0035 Score=48.72 Aligned_cols=45 Identities=13% Similarity=0.109 Sum_probs=36.7
Q ss_pred hcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccc
Q 014791 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHS 412 (418)
Q Consensus 365 KKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~ 412 (418)
+|+-.+..+...+|..+|.. .|||+..++..||. .||-|.|.|.-
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~k 63 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVN 63 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHH
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHH
Confidence 34555788888899888755 79999999999998 79999987743
No 58
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=96.25 E-value=0.0025 Score=50.82 Aligned_cols=47 Identities=15% Similarity=0.078 Sum_probs=38.1
Q ss_pred HHhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 362 ~kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
..+|+|..+..+...+|..+|. ..|||+..++..||. .||-|.|.|.
T Consensus 27 ~~rr~Rt~ft~~Ql~~Le~~F~---~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~ 83 (88)
T 2r5y_A 27 ETKRQRTSYTRYQTLELEKEFH---FNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKW 83 (88)
T ss_dssp ----CCCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHh---ccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHh
Confidence 3567788899999999998885 579999999999998 7999988764
No 59
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=96.18 E-value=0.0032 Score=54.98 Aligned_cols=46 Identities=11% Similarity=0.222 Sum_probs=39.0
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
++|+|..+..+...+|..++.. .|||+..++..||. .||-|.|.|.
T Consensus 87 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~ 142 (146)
T 1au7_A 87 KRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQRE 142 (146)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhh
Confidence 4566788999999999999866 79999999999998 7999988764
No 60
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=96.09 E-value=0.0039 Score=45.77 Aligned_cols=38 Identities=11% Similarity=0.118 Sum_probs=32.1
Q ss_pred CccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccc
Q 014791 370 LPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLR 410 (418)
Q Consensus 370 LPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR 410 (418)
+.++...+|..++.. +|||+..++..||. .||.|.|.|
T Consensus 4 ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k 51 (56)
T 3a03_A 4 FSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTK 51 (56)
T ss_dssp CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhh
Confidence 556677889888864 69999999999998 799998866
No 61
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=96.09 E-value=0.0031 Score=48.63 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=38.2
Q ss_pred hhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 364 kKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
.|+|-.+..+...+|..+|.. ..|||+..++..||. .||-|.|.|.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~--~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~ 58 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNK--VNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEW 58 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHH--TTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 356778899999999988842 368999999999998 7999988653
No 62
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=96.07 E-value=0.0034 Score=59.40 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=31.4
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR 401 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~ 401 (418)
+||.|-++++....+|..||.. +|||++.+|..||.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~ 177 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVE 177 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHH
Confidence 4556778999999999999886 89999999999984
No 63
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=95.94 E-value=0.0048 Score=47.33 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=38.5
Q ss_pred hhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 364 KRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 364 kKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
++.|-.+..+...+|..+|.. .|||+..++..||. .||-|.|.+.
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 61 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQ 61 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred CCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHH
Confidence 456778889999999999874 79999999999998 7999988664
No 64
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=95.94 E-value=0.004 Score=55.50 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=34.8
Q ss_pred HHhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 362 ~kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
.+||+|-.+..+...+|..+|.. .|||+..++..||. .||-|.|.|.
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~ 154 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKE 154 (164)
T ss_dssp --------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHH
Confidence 34567788999999999999866 79999999999998 7999987654
No 65
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=95.88 E-value=0.0033 Score=51.55 Aligned_cols=41 Identities=12% Similarity=0.049 Sum_probs=34.9
Q ss_pred CCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccccc
Q 014791 369 KLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHS 412 (418)
Q Consensus 369 kLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~ 412 (418)
.+..+...+|..||.. +|||+..++..||. .||.|.|.|.-
T Consensus 17 ~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~r 67 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKA 67 (89)
T ss_dssp CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHH
Confidence 6778888999999854 78999999999998 79999986643
No 66
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.73 E-value=0.008 Score=45.88 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=34.2
Q ss_pred CCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 367 AGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 367 rGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
++...++...+|..+|. .+|||+..++..||. .||-|.|-|-
T Consensus 7 ~~~p~~~Ql~~Le~~F~---~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~ 58 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYA---LNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQ 58 (64)
T ss_dssp CCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTC
T ss_pred CCCccHHHHHHHHHHHh---cCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCC
Confidence 34455677889988873 589999999999998 6999998764
No 67
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=95.65 E-value=0.0028 Score=55.71 Aligned_cols=46 Identities=20% Similarity=0.329 Sum_probs=38.5
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
+||+|-.+..+...+|..||. ..|||+..++..||. .||-|.|.|.
T Consensus 96 ~rr~Rt~ft~~Q~~~Le~~F~---~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~ 151 (155)
T 3l1p_A 96 RKRKRTSIENRVRWSLETMFL---KSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKG 151 (155)
T ss_dssp SCCCCCCCCHHHHHHHHTTTT---TCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCcccCHHHHHHHHHHHc---cCCCCCHHHHHHHHHHcCCChhheeeccccccccc
Confidence 455677788889999988874 789999999999998 7999988653
No 68
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.51 E-value=0.009 Score=48.09 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=33.0
Q ss_pred CccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 370 LPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 370 LPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
+..+...+|..+|.. +|||+..++..||. .||-|.|.|.
T Consensus 20 ~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~ 68 (89)
T 2dmp_A 20 KTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLR 68 (89)
T ss_dssp CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHH
Confidence 667778889888865 69999999999998 7999998653
No 69
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=95.20 E-value=0.0071 Score=47.65 Aligned_cols=42 Identities=17% Similarity=0.183 Sum_probs=33.9
Q ss_pred ccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccccccc
Q 014791 371 PGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSMML 415 (418)
Q Consensus 371 PKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~~l 415 (418)
.|+....|..++.. .||||..|+..||. +||-|.|-+.=+.+
T Consensus 12 ~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 56788888877764 69999999999998 79999986654443
No 70
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=94.26 E-value=0.034 Score=44.61 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=39.7
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccc
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRH 411 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~ 411 (418)
+||.|..|+.++..+|+.-+.. ..|||+++++..|++ -||-|.|--+
T Consensus 7 ~kR~RT~~s~eQL~~Lqs~f~~--~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 7 GPRSRTKISLEALGILQSFIHD--VGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCSHHHHHHHHHHHH--HCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCccCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 5677899999999999977654 368999999999999 4999988544
No 71
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=93.32 E-value=0.022 Score=52.46 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=30.1
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR 401 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~ 401 (418)
+||+|-.+++....+|..+|.. .|||+..++..||.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~---~~yp~~~~Re~la~ 150 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVE 150 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---HCCCCTTTTHHHHH
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHH
Confidence 3667888999999999999876 68999999998876
No 72
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=93.22 E-value=0.054 Score=44.92 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=27.4
Q ss_pred HHhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH
Q 014791 362 LRKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR 401 (418)
Q Consensus 362 ~kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~ 401 (418)
.++|+|-.+..+...+|..+|.. .|||+..++..||.
T Consensus 8 k~rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~ 44 (99)
T 1lfb_A 8 KGRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVE 44 (99)
T ss_dssp -----CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHH
T ss_pred CCCCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHH
Confidence 44566778999999999888754 79999999998765
No 73
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=92.36 E-value=0.072 Score=41.47 Aligned_cols=41 Identities=10% Similarity=0.143 Sum_probs=31.8
Q ss_pred CccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhccccccccc
Q 014791 370 LPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLRHSM 413 (418)
Q Consensus 370 LPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR~~~ 413 (418)
+..+....|..++. ..|||+..++..||. .||-|.|.|.-+
T Consensus 11 ~t~~ql~~LE~~F~---~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr 61 (69)
T 2l9r_A 11 MSHTQVIELERKFS---HQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKR 61 (69)
T ss_dssp CCHHHHHHHHHHHH---HCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhh
Confidence 34455677877774 468999999999998 799998876543
No 74
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.90 E-value=0.11 Score=43.90 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=28.8
Q ss_pred HhhcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH
Q 014791 363 RKRRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR 401 (418)
Q Consensus 363 kkKKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~ 401 (418)
++|+|-.+.+....+|..++. ..|||+.+++..||.
T Consensus 6 ~Rr~Rt~ft~~ql~~Le~~F~---~~~yPs~~~Re~LA~ 41 (102)
T 2da6_A 6 SGRNRFKWGPASQQILYQAYD---RQKNPSKEEREALVE 41 (102)
T ss_dssp SCCCCCCCCHHHHHHHHHHHT---TCSSCCHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHc---CCCCCCHHHHHHHHH
Confidence 355677788899999987765 467999999999875
No 75
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=90.80 E-value=0.1 Score=40.53 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=33.0
Q ss_pred hcCCCCccchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccc
Q 014791 365 RRAGKLPGDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLR 410 (418)
Q Consensus 365 KKrGkLPKeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR 410 (418)
|+|..+..+...+|...|. ...+||+..++..||. .||-|-|.+
T Consensus 10 k~r~r~~~~ql~~LE~~F~--~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k 63 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFV--SVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQ 63 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHH--HTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH--hcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccC
Confidence 3444455666788877762 2468999999999998 699998765
No 76
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.78 E-value=0.63 Score=37.28 Aligned_cols=36 Identities=19% Similarity=0.181 Sum_probs=28.1
Q ss_pred cchHHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccc
Q 014791 372 GDTTSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLR 410 (418)
Q Consensus 372 KeAt~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR 410 (418)
|+-..+|+..|. ..||||.+|...||+ -||-|.|-+
T Consensus 14 k~ql~~Lk~yF~---~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYA---MNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHH---HCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 556677765554 469999999999999 499998753
No 77
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=80.75 E-value=0.64 Score=35.99 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=24.6
Q ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHH----------Hhhcccccc
Q 014791 375 TSVLKSWWQSHSKWPYPTVSPVTLLLR----------FLFKSLPLR 410 (418)
Q Consensus 375 t~iL~~W~~~H~~~PYPSE~EK~~La~----------NWFiNaRrR 410 (418)
..+|...|.. ..+||+..++..||. .||-|-|-+
T Consensus 12 ~~~LE~~F~~--~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k 55 (64)
T 1x2m_A 12 NAILEKVFTA--ITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQ 55 (64)
T ss_dssp HHHHHHHHHT--TCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 4455444422 358999999999998 699997754
No 78
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=43.36 E-value=30 Score=32.52 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhhC
Q 014791 245 HYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTG 284 (418)
Q Consensus 245 aYC~mL~KYKEELsrP~~~~a~EA~~F~~~IEsQL~sLt~ 284 (418)
.|-.-|-....-|+.+.+ ..|++.+++++=..|+++|+
T Consensus 83 ~YLkkLD~l~~~Lq~h~~--Lse~l~l~kqLs~sLh~mC~ 120 (204)
T 2jqq_A 83 EYLKKLDEIYGSLRNHSQ--LTEALSLGKRLSKSLHEMCG 120 (204)
T ss_dssp HHHHHHHHHHHTCSSSSH--HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHhC
Confidence 588888888889988864 67999999999999999997
No 79
>1sse_B AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1
Probab=40.62 E-value=25 Score=29.08 Aligned_cols=29 Identities=24% Similarity=0.376 Sum_probs=18.9
Q ss_pred CCCceeccCCCcchhhhhHHHHHHHhhCCChH
Q 014791 156 SEGVVVESGADGVVNWQNARYKAEILSHPLYE 187 (418)
Q Consensus 156 ~~~~~~~~~~~~~~~~e~e~iKAkI~sHPlYp 187 (418)
++.|| .+..+.++. -..+=-+|.+||+|.
T Consensus 20 ~~~vv-ps~~g~lL~--c~~iWd~I~shP~~~ 48 (86)
T 1sse_B 20 DNDVV-PSKEGSLLR--CSEIWDRITTHPKYS 48 (86)
T ss_dssp CCCSS-CCSSCCEEC--HHHHHHHHHTCSCCS
T ss_pred cCeee-eCCCcceec--HHHHHHHHhcCcchh
Confidence 33444 444444544 456678999999998
No 80
>2k6l_A Putative uncharacterized protein; xanthonomas axonopodis, RHH, structural proteomics, plasmid, hypothetical DNA binding protein; NMR {Xanthomonas axonopodis PV}
Probab=38.55 E-value=24 Score=26.67 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHHhhcCCCCccchHHHHHHHHHh
Q 014791 338 VRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKSWWQS 384 (418)
Q Consensus 338 ~DqELK~~LlrKYsg~l~~LkqEf~kkKKrGkLPKeAt~iL~~W~~~ 384 (418)
.|+.|+.-|...|++. ||-|.|-.-+.|+.|+++
T Consensus 14 ~d~~lR~~l~~~~G~r-------------KGdlSkfVEeAvr~~lf~ 47 (51)
T 2k6l_A 14 VDQSVRMFIAAQGGGR-------------KGDLSRFIEDAVRAYLFE 47 (51)
T ss_dssp HHHHHHHHHHHHCSCC-------------SSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc-------------cccHHHHHHHHHHHHHHH
Confidence 5788888888888775 999999999999998764
No 81
>4a8j_C Elongator complex protein 6; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_C
Probab=32.34 E-value=17 Score=35.51 Aligned_cols=56 Identities=27% Similarity=0.407 Sum_probs=25.4
Q ss_pred CCcCCCCC--CCCCCCCCCchhhhhhcCCCCCCCC-CCCccc-cccccCCCCchhhHHHHHhh
Q 014791 1 MAFHHNHL--SQDLPLHHFTDQQQQQQQQPPSPPQ-QQHHQH-QQSIETTAPNWLNSALLRSQ 59 (418)
Q Consensus 1 ma~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~wl~~a~~~~~ 59 (418)
|--||.|+ -|.-+|.=|.|+.--...- -.+ ..++-- .-...++.|+||.++++-..
T Consensus 1 ~~~~~~~~~~~~~QdL~~F~d~svis~~l---~~~~~~~~L~liT~~~gTsp~WLin~lves~ 60 (280)
T 4a8j_C 1 MHHHHHHMGSVQRQDLVLFSDQSVLPAHF---FQDSNSHNLFFITHQSCTQPLWMINALVETH 60 (280)
T ss_dssp -----------CBCCCCCBTTSCSSCGGG---GTSSSCCEEEEEEECTTSCCHHHHHHHHHHH
T ss_pred CCccccccccccccceEEEcCCccccHhH---cCCCCCceEEEEccccCCChHHHHHHHHHHH
Confidence 33455565 2334466688876332210 011 122211 11346788999999999864
No 82
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=31.69 E-value=23 Score=24.22 Aligned_cols=18 Identities=44% Similarity=0.619 Sum_probs=15.2
Q ss_pred HHHHhhCCChHHHHHHHH
Q 014791 177 KAEILSHPLYEQLLSAHV 194 (418)
Q Consensus 177 KAkI~sHPlYp~LL~AyI 194 (418)
--||++-|+|.-||+|--
T Consensus 6 ipkiissplfktllsavg 23 (33)
T 1xc0_A 6 IPKIISSPLFKTLLSAVG 23 (33)
T ss_dssp HHHHTTTTTHHHHHHHHH
T ss_pred hhHHHccHHHHHHHHHHH
Confidence 358999999999998843
No 83
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=25.12 E-value=2.3e+02 Score=22.67 Aligned_cols=48 Identities=23% Similarity=0.308 Sum_probs=34.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhhh---------hhhHHHHHHHHHHHHHHHhhhh
Q 014791 236 DKELDQFMTHYVLLLCSFKEQLQQHV---------RVHAMEAVMACWEIEQSLQSLT 283 (418)
Q Consensus 236 DPELDQFMEaYC~mL~KYKEELsrP~---------~~~a~EA~~F~~~IEsQL~sLt 283 (418)
.-|+|..-.+--+.=.||.+|+..-- |+..++|.+.--.+|.|+.+|.
T Consensus 20 ~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 20 EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 35677766666667778888876542 3455788877779999999886
No 84
>2w9j_A Signal recognition particle subunit SRP14; radiation-induced phasing, RNA-BI ribonucleoprotein, signaling P arsenic, ALU-domain; 2.60A {Schizosaccharomyces pombe}
Probab=22.93 E-value=40 Score=27.67 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=16.1
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 014791 235 DDKELDQFMTHYVLLLCSF 253 (418)
Q Consensus 235 ~DPELDQFMEaYC~mL~KY 253 (418)
.-.+|+.|+.+|+.+|...
T Consensus 63 ~~~~l~~F~~~Y~~v~K~~ 81 (91)
T 2w9j_A 63 ELDYFTDFFQSYAEVXKGQ 81 (91)
T ss_dssp EGGGHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhC
Confidence 4579999999999998654
No 85
>1e8o_B SRP14, signal recognition particle 14 kDa protein; ALU ribonucleoprotein particle, protein recognition of AN RNA U-turn, translational control; HET: GDP; 3.20A {Homo sapiens} SCOP: d.49.1.1 PDB: 1e8s_B 1ry1_D*
Probab=22.71 E-value=37 Score=28.42 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=15.5
Q ss_pred CChHHHHHHHHHHHHHHH
Q 014791 235 DDKELDQFMTHYVLLLCS 252 (418)
Q Consensus 235 ~DPELDQFMEaYC~mL~K 252 (418)
.-.+|+.|+.+|+.+|..
T Consensus 71 ~~~dl~~F~~~Y~~v~K~ 88 (106)
T 1e8o_B 71 SSKEVNKFQMAYSNLLRA 88 (106)
T ss_dssp ETTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 457899999999999865
No 86
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=20.28 E-value=73 Score=25.44 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=30.6
Q ss_pred CCCccchHHHHHHHHHhcc--CCCCCCHHHHHHHHH---------------Hhhccccccc
Q 014791 368 GKLPGDTTSVLKSWWQSHS--KWPYPTVSPVTLLLR---------------FLFKSLPLRH 411 (418)
Q Consensus 368 GkLPKeAt~iL~~W~~~H~--~~PYPSE~EK~~La~---------------NWFiNaRrR~ 411 (418)
..+..+.-..|..|..... .-| +|...-+.-|. .|+-++.+|+
T Consensus 71 ~~~~~~~E~~L~~Wi~~~~~~g~p-vs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 71 LSPYDKLEGLLIAWFQQIRAAGLP-VKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRR 130 (131)
T ss_dssp CCTTHHHHHHHHHHHHHHGGGTCC-CCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhc
Confidence 3345567899999998764 566 88776555544 6988888876
Done!