BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014792
(418 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WHG|A Chain A, Solution Structure Of The Cap-Gly Domain In Mouse Tubulin
Specific Chaperone B
Length = 113
Score = 55.8 bits (133), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 15 VHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVR 74
V + + + R GTV YVG G W+GV +D GK+DGS+NG RYF+ ++ K G+FV+
Sbjct: 41 VRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQA-KYGAFVK 99
Query: 75 VHNLSPGISLPEA 87
++ G S P +
Sbjct: 100 PSAVTVGDSGPSS 112
>pdb|2CP0|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 170-Related Protein Clipr59
Length = 95
Score = 54.7 bits (130), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 10 KLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKS 69
+LG RV D ++ GT+++ G + SG W+GV+ D GK+DGS+ GVRYF K
Sbjct: 18 RLGDRV--LLDGQKTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPP-KQ 74
Query: 70 GSFVRVHNLSPGI 82
G F V +S +
Sbjct: 75 GLFASVSKISKAV 87
>pdb|2CP5|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 141
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKS 66
+ +++G+RV + + G ++++GE Q G W G+ D GK+DGS+ GVRYFQ +
Sbjct: 63 DDFRVGERVWV--NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEP 120
Query: 67 QKSGSFVRVHNLSPGISLPEA 87
K G F R L+ +S P +
Sbjct: 121 LK-GIFTRPSKLTRKVSGPSS 140
>pdb|2CP7|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse
Clip- 170RESTIN
Length = 84
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 9 YKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQK 68
+++G+RV + + G ++++GE Q G W G+ D GK+DGS+ GVRYFQ + K
Sbjct: 8 FRVGERVWV--NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLK 65
Query: 69 SGSFVRVHNLSPGISLPEA 87
G F R L+ +S P +
Sbjct: 66 -GIFTRPSKLTRKVSGPSS 83
>pdb|1TOV|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly
Domain Of F53f4.3
Length = 98
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 18 ANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHN 77
A ARR G V YVG + G W+GV +D GK+DGS+ GVRYF K G FVR +
Sbjct: 27 AQMARR-GEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDP-KYGGFVRPVD 84
Query: 78 LSPGISLPE 86
+ G PE
Sbjct: 85 VKVG-DFPE 92
>pdb|1LPL|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly
Domain Of F53f4.3
Length = 95
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/69 (46%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 18 ANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHN 77
A ARR G V YVG + G W+GV +D GK+DGS+ GVRYF K G FVR +
Sbjct: 24 AQMARR-GEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDP-KYGGFVRPVD 81
Query: 78 LSPGISLPE 86
+ G PE
Sbjct: 82 VKVG-DFPE 89
>pdb|2CP3|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 115CYLN2
Length = 84
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 10 KLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKS 69
+LG RV + G V+YVGE G W GV+ D GK+DG++ G RYFQ K
Sbjct: 9 RLGDRVLVG--GTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPP-KF 65
Query: 70 GSFVRVHNL 78
G F +H +
Sbjct: 66 GLFAPIHKV 74
>pdb|3RDV|A Chain A, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|B Chain B, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|C Chain C, Structure Of The Slain2c-Clipcg1 Complex
pdb|3RDV|D Chain D, Structure Of The Slain2c-Clipcg1 Complex
Length = 72
Score = 51.6 bits (122), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKS 66
+ +++G+RV + + G ++++GE Q G W G+ D GK+DGS+ GVRYFQ +
Sbjct: 1 DDFRVGERVWV--NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEP 58
Query: 67 QKSGSFVRVHNLS 79
K G F R L+
Sbjct: 59 LK-GIFTRPSKLT 70
>pdb|2E3I|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 1
Length = 86
Score = 51.6 bits (122), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKS 66
+ +++G+RV + + G ++++GE Q G W G+ D GK+DGS+ GVRYFQ +
Sbjct: 1 DDFRVGERVWV--NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEP 58
Query: 67 QKSGSFVRVHNLS 79
K G F R L+
Sbjct: 59 LK-GIFTRPSKLT 70
>pdb|2E4H|A Chain A, Solution Structure Of Cytoskeletal Protein In Complex
With Tubulin Tail
Length = 98
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 10 KLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKS 69
K+G RV + G V+++GE G W GV+ D GK+DG++ G RYFQ + K
Sbjct: 11 KIGDRVLVG--GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQP-KY 67
Query: 70 GSFVRVHNLS 79
G F VH ++
Sbjct: 68 GLFAPVHKVT 77
>pdb|2E3H|A Chain A, Crystal Structure Of The Clip-170 Cap-Gly Domain 2
Length = 90
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 10 KLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKS 69
K+G RV + G V+++GE G W GV+ D GK+DG++ G RYFQ + K
Sbjct: 3 KIGDRVLVG--GTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQP-KY 59
Query: 70 GSFVRVHNLS 79
G F VH ++
Sbjct: 60 GLFAPVHKVT 69
>pdb|2CP6|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Human
Clip- 170RESTIN
Length = 172
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 10 KLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKS 69
K+G RV + G V+++GE G W GV+ D GK+DG++ G RYFQ + K
Sbjct: 40 KIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQ-PKY 96
Query: 70 GSFVRVHNLSPGISLPEALRVRYR 93
G F VH ++ I P + +
Sbjct: 97 GLFAPVHKVTK-IGFPSTTPAKAK 119
>pdb|2QK0|A Chain A, Structural Basis Of Microtubule Plus End Tracking By
Xmap215, Clip-170 And Eb1
Length = 74
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 9 YKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQK 68
+++G+RV + + G ++++GE Q G W G+ D GK+DGS+ GVRYFQ + K
Sbjct: 4 FRVGERVWV--NGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLK 61
Query: 69 SGSFVR 74
G F R
Sbjct: 62 -GIFTR 66
>pdb|2COW|A Chain A, Solution Structure Of The Cap-Gly Domain In Human
Kinesin- Like Protein Kif13b
Length = 100
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQ 63
PE + G+ V A + G V+YVG GTW+GV+ D +GK+DGSI G +YF+
Sbjct: 21 PEWLREGEFVTVG--AHKTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFR 76
>pdb|2CP2|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human
Clip- 115CYLN2
Length = 95
Score = 48.9 bits (115), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 9 YKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQK 68
+ +G+RV + + G V+Y+GE Q G W GV D GK+DG++ GVRYF+ + +
Sbjct: 19 FVVGERVWV--NGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQ 76
Query: 69 SGSFVRVHNLSPGISLPEA 87
G F R L+ S P +
Sbjct: 77 -GIFTRPSKLTRQPSGPSS 94
>pdb|1TXQ|A Chain A, Crystal Structure Of The Eb1 C-Terminal Domain Complexed
With The Cap-Gly Domain Of P150glued
pdb|2HQH|A Chain A, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|B Chain B, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|C Chain C, Crystal Structure Of P150glued And Clip-170
pdb|2HQH|D Chain D, Crystal Structure Of P150glued And Clip-170
Length = 93
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 10 KLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKS 69
++G RV R GTV YVG +G W+GV D GK+DG++ G +YF +
Sbjct: 14 RVGSRVEVIGKGHR-GTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTC-DEGH 71
Query: 70 GSFVR 74
G FVR
Sbjct: 72 GIFVR 76
>pdb|2HKN|A Chain A, Crystal Structure Of The Cap-Gly Domain Of Human
Dynactin-1 (P150- Glued)
pdb|2HKN|B Chain B, Crystal Structure Of The Cap-Gly Domain Of Human
Dynactin-1 (P150- Glued)
pdb|2HKQ|B Chain B, Crystal Structure Of The C-Terminal Domain Of Human Eb1
In Complex With The Cap-Gly Domain Of Human Dynactin-1
(P150-Glued)
pdb|3E2U|A Chain A, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|B Chain B, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|C Chain C, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|3E2U|D Chain D, Crystal Structure Of The Zink-Knuckle 2 Domain Of Human
Clip-170 In Complex With Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
Length = 97
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 10 KLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKS 69
++G RV R GTV YVG +G W+GV D GK+DG++ G +YF +
Sbjct: 14 RVGSRVEVIGKGHR-GTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTC-DEGH 71
Query: 70 GSFVR 74
G FVR
Sbjct: 72 GIFVR 76
>pdb|2COY|A Chain A, Solution Structure Of The Cap-Gly Domain In Human
Dynactin 1
Length = 112
Score = 48.1 bits (113), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 10 KLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKS 69
++G RV R GTV YVG +G W+GV D GK+DG++ G +YF +
Sbjct: 35 RVGSRVEVIGKGHR-GTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTC-DEGH 92
Query: 70 GSFVR 74
G FVR
Sbjct: 93 GIFVR 97
>pdb|3TQ7|P Chain P, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain
Of P150glued
pdb|3TQ7|Q Chain Q, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain
Of P150glued
Length = 71
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 10 KLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKS 69
++G RV R GTV YVG +G W+GV D GK+DG++ G +YF +
Sbjct: 2 RVGSRVEVIGKGHR-GTVAYVGMTLFATGKWVGVILDEAKGKNDGTVQGRKYFTC-DEGH 59
Query: 70 GSFVR 74
G FVR
Sbjct: 60 GIFVR 64
>pdb|2HL3|A Chain A, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of
Human Dynactin-1 (P150-Glued) In Complex With Human Eb1
C- Terminal Hexapeptide
pdb|2HL3|B Chain B, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of
Human Dynactin-1 (P150-Glued) In Complex With Human Eb1
C- Terminal Hexapeptide
pdb|2HL5|C Chain C, Crystal Structure Of The C-Terminal Domain Of Human Eb1
In Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
pdb|2HL5|D Chain D, Crystal Structure Of The C-Terminal Domain Of Human Eb1
In Complex With The A49m Mutant Cap-Gly Domain Of Human
Dynactin-1 (P150-Glued)
Length = 97
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 10 KLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKS 69
++G RV R GTV YVG +G W+GV D GK+DG++ G +YF +
Sbjct: 14 RVGSRVEVIGKGHR-GTVAYVGMTLFATGKWVGVILDEAKGKNDGTVQGRKYFTC-DEGH 71
Query: 70 GSFVR 74
G FVR
Sbjct: 72 GIFVR 76
>pdb|4B6M|A Chain A, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly
Domain
pdb|4B6M|B Chain B, Trypansoma Brucei Tubulin Binding Cofactor B Cap-Gly
Domain
Length = 84
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 23 RIGTVKYVGEVQGYS-GTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81
R+G+V++VG V G W+GV++D GK DG++ G R FQ + G F+R + G
Sbjct: 19 RLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQPN-YGGFLRPDQVEVG 77
Query: 82 ISLPEAL 88
PE
Sbjct: 78 DFPPEVF 84
>pdb|2Z0W|A Chain A, Crystal Structure Of The 2nd Cap-Gly Domain In Human
Restin- Like Protein 2 Reveals A Swapped-Dimer
Length = 96
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 10 KLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKS 69
+LG+RV +R+GT+++ G G W G++ + +GK+DGS+ GV+YF S +
Sbjct: 12 RLGERVLVV--GQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSC-SPRY 68
Query: 70 GSF 72
G F
Sbjct: 69 GIF 71
>pdb|1WHH|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Mouse
Clip170-Related 59kda Protein Clipr-59
Length = 102
Score = 45.8 bits (107), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 21 ARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFV---RVHN 77
++ G V++ G+ G W G++ D GKHDGS+ GVRYF + + G F R+
Sbjct: 36 GQKQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTC-APRHGVFAPASRIQR 94
Query: 78 LSPGIS 83
+ G S
Sbjct: 95 IGSGPS 100
>pdb|1WHJ|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Mouse
1700024k14rik Hypothetical Protein
Length = 102
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 10 KLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKS 69
KLG RV A +++GT+++ G + SG W G++ D GK++GS+ V+YF+ + K
Sbjct: 26 KLGDRVVIA--GQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKC-APKY 82
Query: 70 GSFVRVHNLS 79
G F + +S
Sbjct: 83 GIFAPLSKIS 92
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 20/175 (11%)
Query: 154 IVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSK--EVTGLPQLKSIRILV 211
I+TNL EL L GN L KDIG L L L+L+NN +S ++GL +L +++
Sbjct: 214 ILTNLDELSLNGNQL---KDIGTLAS-LTNLTDLDLANNQISNLAPLSGLTKLTELKL-- 267
Query: 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAE 271
G N + L AL L L N + +I+P+S+ NL L L N I++
Sbjct: 268 ----GANQISNISPLAGLTALTNLELNENQLEDISPISN-----LKNLTYLTLYFNNISD 318
Query: 272 WSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLC 326
S + L + L++L+ + N ++ + N T +SA + P NL
Sbjct: 319 ISPVSSLTK---LQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLT 370
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 106/288 (36%), Gaps = 71/288 (24%)
Query: 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRIL-VLN 213
+TNL L+L+ N +SD + L +L LN N +VT L L ++ L L+
Sbjct: 128 LTNLNRLELSSNTISDISALSG----LTSLQQLNFGN-----QVTDLKPLANLTTLERLD 178
Query: 214 CTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNL-------------- 259
+ + +L L LE L N IS+ITP+ I+ D L
Sbjct: 179 ISSNKVSDISVLAK-LTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDIGTLA 235
Query: 260 QLLNLEDNCIA--EWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEE 317
L NL D +A + S + L + L +L L N ++ I T + +E+ E
Sbjct: 236 SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE 295
Query: 318 SYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPK 377
P NL L +YF N I D++ + SL K
Sbjct: 296 DISPISNLKNL-------------TYLTLYF------------NNISDISPVSSL---TK 327
Query: 378 LMDIRLSENPVSD--------------PGRGGISRFAIIARLGKIKIL 411
L + S N VSD G IS +A L +I L
Sbjct: 328 LQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 375
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 81/175 (46%), Gaps = 20/175 (11%)
Query: 154 IVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSK--EVTGLPQLKSIRILV 211
I+TNL EL L GN L KDIG L L L+L+NN +S ++GL +L +++
Sbjct: 215 ILTNLDELSLNGNQL---KDIGTLAS-LTNLTDLDLANNQISNLAPLSGLTKLTELKL-- 268
Query: 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAE 271
G N + L AL L L N + +I+P+S NL L L N I++
Sbjct: 269 ----GANQISNISPLAGLTALTNLELNENQLEDISPIS-----NLKNLTYLTLYFNNISD 319
Query: 272 WSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLC 326
S + L + L++L+ + N ++ + N T +SA + P NL
Sbjct: 320 ISPVSSLTK---LQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLT 371
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 108/288 (37%), Gaps = 70/288 (24%)
Query: 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRIL-VLN 213
+TNL L+L+ N +SD + L +L L+ S+N +VT L L ++ L L+
Sbjct: 128 LTNLNRLELSSNTISDISALSG----LTSLQQLSFSSN----QVTDLKPLANLTTLERLD 179
Query: 214 CTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNL-------------- 259
+ + +L L LE L N IS+ITP+ I+ D L
Sbjct: 180 ISSNKVSDISVLAK-LTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKDIGTLA 236
Query: 260 QLLNLEDNCIA--EWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEE 317
L NL D +A + S + L + L +L L N ++ I T + +E+ E
Sbjct: 237 SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE 296
Query: 318 SYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPK 377
P NL L +YF N I D++ + SL K
Sbjct: 297 DISPISNLKNL-------------TYLTLYF------------NNISDISPVSSL---TK 328
Query: 378 LMDIRLSENPVSD--------------PGRGGISRFAIIARLGKIKIL 411
L + S N VSD G IS +A L +I L
Sbjct: 329 LQRLFFSNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQL 376
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 81/175 (46%), Gaps = 20/175 (11%)
Query: 154 IVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSK--EVTGLPQLKSIRILV 211
I+TNL EL L GN L KDIG L L L+L+NN +S ++GL +L +++
Sbjct: 218 ILTNLDELSLNGNQL---KDIGTLAS-LTNLTDLDLANNQISNLAPLSGLTKLTELKL-- 271
Query: 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAE 271
G N + L AL L L N + +I+P+S+ NL L L N I++
Sbjct: 272 ----GANQISNISPLAGLTALTNLELNENQLEDISPISN-----LKNLTYLTLYFNNISD 322
Query: 272 WSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLC 326
S + L + L++L+ N ++ + N T +SA + P NL
Sbjct: 323 ISPVSSLTK---LQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLT 374
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 81/175 (46%), Gaps = 20/175 (11%)
Query: 154 IVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSK--EVTGLPQLKSIRILV 211
I+TNL EL L GN L KDIG L L L+L+NN +S ++GL +L +++
Sbjct: 219 ILTNLDELSLNGNQL---KDIGTLAS-LTNLTDLDLANNQISNLAPLSGLTKLTELKL-- 272
Query: 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAE 271
G N + L AL L L N + +I+P+S+ NL L L N I++
Sbjct: 273 ----GANQISNISPLAGLTALTNLELNENQLEDISPISN-----LKNLTYLTLYFNNISD 323
Query: 272 WSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLC 326
S + L + L++L+ N ++ + N T +SA + P NL
Sbjct: 324 ISPVSSLTK---LQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLT 375
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 20/175 (11%)
Query: 154 IVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSK--EVTGLPQLKSIRILV 211
I+TNL EL L GN L KDIG L L L+L+NN +S ++GL +L +++
Sbjct: 215 ILTNLDELSLNGNQL---KDIGTLAS-LTNLTDLDLANNQISNLAPLSGLTKLTELKL-- 268
Query: 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAE 271
G N + L AL L L N + +I+P+S NL L L N I++
Sbjct: 269 ----GANQISNISPLAGLTALTNLELNENQLEDISPIS-----NLKNLTYLTLYFNNISD 319
Query: 272 WSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLC 326
S + L + L++L+ N ++ + N T +SA + P NL
Sbjct: 320 ISPVSSLTK---LQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLT 371
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRIL-VLN 213
+TNL L+L+ N +SD + L +L L+ S+N +VT L L ++ L L+
Sbjct: 128 LTNLNRLELSSNTISDISALSG----LTSLQQLSFSSN----QVTDLKPLANLTTLERLD 179
Query: 214 CTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQL 261
+ + +L L LE L N IS+ITP+ I+ D L L
Sbjct: 180 ISSNKVSDISVLAK-LTNLESLIATNNQISDITPLG--ILTNLDELSL 224
>pdb|1WHK|A Chain A, Solution Structure Of The 3rd Cap-Gly Domain In Mouse
1700024k14rik Hypothetical Protein
Length = 91
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 21 ARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLS- 79
+ + TV+YVG SG WLG++ GK+DG++ RYF K G VR ++
Sbjct: 24 SNEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCKPN-YGVLVRPSRVTY 82
Query: 80 PGISLPEA 87
GIS P +
Sbjct: 83 RGISGPSS 90
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 20/175 (11%)
Query: 154 IVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSK--EVTGLPQLKSIRILV 211
I+TNL EL L GN L KDIG L L L+L+NN +S ++GL +L +++
Sbjct: 215 ILTNLDELSLNGNQL---KDIGTLAS-LTNLTDLDLANNQISNLAPLSGLTKLTELKL-- 268
Query: 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAE 271
G N + L AL L L N + +I+P+S NL L L N I++
Sbjct: 269 ----GANQISNISPLAGLTALTNLELNENQLEDISPIS-----NLKNLTYLTLYFNNISD 319
Query: 272 WSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLC 326
S + L + L++L+ N ++ + N T +SA + P NL
Sbjct: 320 ISPVSSLTK---LQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLT 371
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRIL-VLN 213
+TNL L+L+ N +SD + L +L LN S+N +VT L L ++ L L+
Sbjct: 128 LTNLNRLELSSNTISDISALSG----LTSLQQLNFSSN----QVTDLKPLANLTTLERLD 179
Query: 214 CTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQL 261
+ + +L L LE L N IS+ITP+ I+ D L L
Sbjct: 180 ISSNKVSDISVLAK-LTNLESLIATNNQISDITPLG--ILTNLDELSL 224
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 81/175 (46%), Gaps = 20/175 (11%)
Query: 154 IVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSK--EVTGLPQLKSIRILV 211
I+TNL EL L GN L KDIG L L L+L+NN +S ++GL +L +++
Sbjct: 214 ILTNLDELSLNGNQL---KDIGTLAS-LTNLTDLDLANNQISNLAPLSGLTKLTELKL-- 267
Query: 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAE 271
G N + L AL L L N + +I+P+S+ NL L L N I++
Sbjct: 268 ----GANQISNISPLAGLTALTNLELNENQLEDISPISN-----LKNLTYLTLYFNNISD 318
Query: 272 WSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLC 326
S + L + L++L+ N ++ + N T +SA + P NL
Sbjct: 319 ISPVSSLTK---LQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLT 370
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 13/108 (12%)
Query: 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRIL-VLN 213
+TNL L+L+ N +SD + L +L LN N +VT L L ++ L L+
Sbjct: 128 LTNLNRLELSSNTISDISALSG----LTSLQQLNFGN-----QVTDLKPLANLTTLERLD 178
Query: 214 CTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQL 261
+ + +L L LE L N IS+ITP+ I+ D L L
Sbjct: 179 ISSNKVSDISVLAK-LTNLESLIATNNQISDITPLG--ILTNLDELSL 223
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 11/153 (7%)
Query: 153 TIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVL 212
+ T ++++L G ++ + + A L A L LS N + K ++ L ++++RIL L
Sbjct: 21 VVATEAEKVELHG-MIPPIEKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSL 78
Query: 213 NCTGVNWMQ-VEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAE 271
G N ++ +E L LEEL + N I+ ++ + + NL++L + +N I
Sbjct: 79 ---GRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLV-----NLRVLYMSNNKITN 130
Query: 272 WSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDT 304
W EI KL + LE L L N L Y NN T
Sbjct: 131 WGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT 163
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 58/194 (29%)
Query: 228 SLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287
+L A + L L N+I +I+ +S G +NL++L+L N I +
Sbjct: 47 TLKACKHLALSTNNIEKISSLS-----GMENLRILSLGRNLIKK---------------- 85
Query: 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVY 347
I L + ++ EE ++ + + L S + +V
Sbjct: 86 -----------------IENLDAVADTLEELWISYNQIASL-----------SGIEKLVN 117
Query: 348 FLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGIS----RFAIIA 403
+ S NN I + ID L + KL D+ L+ NP+ + + + R ++
Sbjct: 118 LRVLYMS-----NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 172
Query: 404 RLGKIKILNGSEVN 417
RL +K L+G V+
Sbjct: 173 RLPNLKKLDGMPVD 186
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 76/153 (49%), Gaps = 11/153 (7%)
Query: 153 TIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVL 212
+ T ++++L G ++ + + A L A L LS N + K ++ L ++++RIL L
Sbjct: 20 VVATEAEKVELHG-MIPPIEKMDATLSTLKACKHLALSTNNIEK-ISSLSGMENLRILSL 77
Query: 213 NCTGVNWMQ-VEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAE 271
G N ++ +E L LEEL + N I+ ++ + + NL++L + +N I
Sbjct: 78 ---GRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLV-----NLRVLYMSNNKITN 129
Query: 272 WSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDT 304
W EI KL + LE L L N L Y NN T
Sbjct: 130 WGEIDKLAALDKLEDLLLAGNPLYNDYKENNAT 162
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 58/194 (29%)
Query: 228 SLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287
+L A + L L N+I +I+ +S G +NL++L+L N I +
Sbjct: 46 TLKACKHLALSTNNIEKISSLS-----GMENLRILSLGRNLIKK---------------- 84
Query: 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVY 347
I L + ++ EE ++ + + L S + +V
Sbjct: 85 -----------------IENLDAVADTLEELWISYNQIASL-----------SGIEKLVN 116
Query: 348 FLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGIS----RFAIIA 403
+ S NN I + ID L + KL D+ L+ NP+ + + + R ++
Sbjct: 117 LRVLYMS-----NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK 171
Query: 404 RLGKIKILNGSEVN 417
RL +K L+G V+
Sbjct: 172 RLPNLKKLDGMPVD 185
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 21/136 (15%)
Query: 130 KFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSD--WKDIGAFGEQLPALAVL 187
K E++T ++L A++ N+KELDL+GN LS D+ F + L +L
Sbjct: 13 KIEKVTDSSLK-----QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK----LELL 63
Query: 188 NLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITP 247
NLS+N++ E L L ++R L LN V + V P++E LH N+IS
Sbjct: 64 NLSSNVLY-ETLDLESLSTLRTLDLNNNYVQELLVG------PSIETLHAANNNISR--- 113
Query: 248 VSSPIVQGFDNLQLLN 263
VS QG N+ L N
Sbjct: 114 VSCSRGQGKKNIYLAN 129
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 56/109 (51%), Gaps = 16/109 (14%)
Query: 157 NLKELDLTGNLLSD--WKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNC 214
N+KELDL+GN LS D+ F + L +LNLS+N++ E L L ++R L LN
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTK----LELLNLSSNVLY-ETLDLESLSTLRTLDLNN 89
Query: 215 TGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLN 263
V + V P++E LH N+IS VS QG N+ L N
Sbjct: 90 NYVQELLVG------PSIETLHAANNNISR---VSCSRGQGKKNIYLAN 129
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 229 LPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288
LP LE L+L N I++IT +S L L+LEDN I S+I+ L + L+ LY
Sbjct: 130 LPQLESLYLGNNKITDITVLSR-----LTKLDTLSLEDNQI---SDIVPLAGLTKLQNLY 181
Query: 289 LNKNNL 294
L+KN++
Sbjct: 182 LSKNHI 187
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 8/69 (11%)
Query: 229 LPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288
LP LE L+L N I++IT ++ L L+LEDN I S+I+ L + L+ LY
Sbjct: 133 LPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQI---SDIVPLAGLTKLQNLY 184
Query: 289 LNKNNLNRI 297
L+KN+++ +
Sbjct: 185 LSKNHISDL 193
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 229 LPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288
LP LE L+L N I++IT ++ L L+LEDN I S+I+ L + L+ LY
Sbjct: 131 LPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQI---SDIVPLAGLTKLQNLY 182
Query: 289 LNKNNL 294
L+KN++
Sbjct: 183 LSKNHI 188
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 229 LPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288
LP LE L+L N I++IT ++ L L+LEDN I S+I+ L + L+ LY
Sbjct: 133 LPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQI---SDIVPLAGLTKLQNLY 184
Query: 289 LNKNNL 294
L+KN++
Sbjct: 185 LSKNHI 190
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 229 LPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288
LP LE L+L N I++IT ++ L L+LEDN I S+I+ L + L+ LY
Sbjct: 153 LPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQI---SDIVPLAGLTKLQNLY 204
Query: 289 LNKNNL 294
L+KN++
Sbjct: 205 LSKNHI 210
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 229 LPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288
LP LE L+L N I++IT +S L L+LEDN I S+I+ L + L+ LY
Sbjct: 151 LPQLESLYLGNNKITDITVLSR-----LTKLDTLSLEDNQI---SDIVPLAGLTKLQNLY 202
Query: 289 LNKNNL 294
L+KN++
Sbjct: 203 LSKNHI 208
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 229 LPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288
LP LE L+L N I++IT +S L L+LEDN I S+I+ L + L+ LY
Sbjct: 151 LPQLESLYLGNNKITDITVLSR-----LTKLDTLSLEDNQI---SDIVPLAGLTKLQNLY 202
Query: 289 LNKNNL 294
L+KN++
Sbjct: 203 LSKNHI 208
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 229 LPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288
LP LE L+L N I++IT +S L L+LEDN I S+I+ L + L+ LY
Sbjct: 151 LPQLESLYLGNNKITDITVLSR-----LTKLDTLSLEDNQI---SDIVPLAGLTKLQNLY 202
Query: 289 LNKNNL 294
L+KN++
Sbjct: 203 LSKNHI 208
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 229 LPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288
LP LE L+L N I++IT ++ L L+LEDN I S+I+ L + L+ LY
Sbjct: 128 LPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQI---SDIVPLACLTKLQNLY 179
Query: 289 LNKNNL 294
L+KN++
Sbjct: 180 LSKNHI 185
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 8/66 (12%)
Query: 229 LPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288
LP LE L+L N I++IT ++ L L+LEDN I I+ L ++ L+ LY
Sbjct: 131 LPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQI---RRIVPLARLTKLQNLY 182
Query: 289 LNKNNL 294
L+KN++
Sbjct: 183 LSKNHI 188
>pdb|2COZ|A Chain A, Solution Structure Of The Cap-Gly Domain In Human
Centrosome-Associated Protein Cap350
Length = 122
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 9 YKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQK 68
+ +G RV N + G +++ GE G W GV+ D G ++G+ +G+ YF+ K +K
Sbjct: 32 FHIGDRVLIGN--VQPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECK-EK 88
Query: 69 SGSFVRVHNLS 79
G F +S
Sbjct: 89 HGIFAPPQKIS 99
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 8/66 (12%)
Query: 229 LPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288
LP LE L+L N I++IT +S L L+LEDN I S+I+ L + L+ LY
Sbjct: 128 LPQLESLYLGNNKITDITVLSR-----LTKLDTLSLEDNQI---SDIVPLAGLTKLQNLY 179
Query: 289 LNKNNL 294
L+KN++
Sbjct: 180 LSKNHI 185
>pdb|1KOH|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOH|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCI 269
+VLN + I++ ++P L L+L N + + +SS IVQ NL++LNL N +
Sbjct: 150 VVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNEL 208
Query: 270 AEWSEILKLCQIRSLEQLYLNKNNLNRIY 298
E+ K+ ++ LE+L+L+ N+L+ +
Sbjct: 209 KSERELDKIKGLK-LEELWLDGNSLSDTF 236
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 27/103 (26%)
Query: 145 SSPGANIGTIVTNLKEL---DLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGL 201
SS A + I N+ EL +L+ N L D+ + ++ P L +LNLS N
Sbjct: 156 SSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN--------- 206
Query: 202 PQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISE 244
+LKS R L +++ LK LEEL L GNS+S+
Sbjct: 207 -ELKSERELD---------KIKGLK-----LEELWLDGNSLSD 234
>pdb|3RW6|A Chain A, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW6|B Chain B, Structure Of Nuclear Rna Export Factor Tap Bound To Cte
Rna
pdb|3RW7|A Chain A, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|B Chain B, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|C Chain C, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
pdb|3RW7|D Chain D, Structure Of N-Terminal Domain Of Nuclear Rna Export
Factor Tap
Length = 267
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCI 269
+VLN + I++ ++P L L+L N + + +SS IVQ NL++LNL N +
Sbjct: 150 VVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNEL 208
Query: 270 AEWSEILKLCQIRSLEQLYLNKNNL 294
E+ K+ ++ LE+L+L+ N+L
Sbjct: 209 KSERELDKIKGLK-LEELWLDGNSL 232
>pdb|1KOO|A Chain A, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|B Chain B, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|C Chain C, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
pdb|1KOO|D Chain D, The Crystal Structure And Mutational Analysis Of A Novel
Rna-Binding Domain Found In The Human Tap Nuclear Mrna
Export Factor
Length = 277
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCI 269
+VLN + I++ ++P L L+L N + + +SS IVQ NL++LNL N +
Sbjct: 150 VVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNEL 208
Query: 270 AEWSEILKLCQIRSLEQLYLNKNNL 294
E+ K+ ++ LE+L+L+ N+L
Sbjct: 209 KSERELDKIKGLK-LEELWLDGNSL 232
>pdb|1FT8|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|C Chain C, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|D Chain D, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FT8|E Chain E, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCI 269
+VLN + I++ ++P L L+L N + + +SS IVQ NL++LNL N +
Sbjct: 144 VVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNEL 202
Query: 270 AEWSEILKLCQIRSLEQLYLNKNNL 294
E+ K+ ++ LE+L+L+ N+L
Sbjct: 203 KSERELDKIKGLK-LEELWLDGNSL 226
>pdb|1FO1|A Chain A, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
pdb|1FO1|B Chain B, Crystal Structure Of The Rna-Binding Domain Of The Mrna
Export Factor Tap
Length = 271
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCI 269
+VLN + I++ ++P L L+L N + + +SS IVQ NL++LNL N +
Sbjct: 144 VVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNEL 202
Query: 270 AEWSEILKLCQIRSLEQLYLNKNNL 294
E+ K+ ++ LE+L+L+ N+L
Sbjct: 203 KSERELDKIKGLK-LEELWLDGNSL 226
>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 176
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 159 KELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVN 218
+ELDL G + +++GA +Q A+ + S+N + K + G P L+ ++ L++N +
Sbjct: 22 RELDLRGYKIPVIENLGATLDQFDAI---DFSDNEIRK-LDGFPLLRRLKTLLVNNNRIC 77
Query: 219 WMQVEILKHSLPALEELHLMGNSISEI 245
+ E L +LP L EL L NS+ E+
Sbjct: 78 RIG-EGLDQALPDLTELILTNNSLVEL 103
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 200 GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNL 259
G+ +L IRI N T I + P+L ELHL GN I+++ S ++G +NL
Sbjct: 169 GMKKLSYIRIADTNIT-------TIPQGLPPSLTELHLDGNKITKVDAAS---LKGLNNL 218
Query: 260 QLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRI 297
L L N I+ L L +L+LN N L ++
Sbjct: 219 AKLGLSFNSISAVDNG-SLANTPHLRELHLNNNKLVKV 255
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 200 GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNL 259
G+ +L IRI N T I + P+L ELHL GN I+++ S ++G +NL
Sbjct: 169 GMKKLSYIRIADTNIT-------TIPQGLPPSLTELHLDGNKITKVDAAS---LKGLNNL 218
Query: 260 QLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRI 297
L L N I+ L L +L+LN N L ++
Sbjct: 219 AKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKV 255
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 13/162 (8%)
Query: 111 NKHVSIELVGKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTI--VTNLKELDLTGNLL 168
N+ + E +G +I D E+ + +L P T + NL LDLT +
Sbjct: 13 NRTYNCENLGLREIPDTLPNTTEVLEFSFNFL----PTIQNTTFSRLINLIFLDLTRCQI 68
Query: 169 SDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHS 228
+W F ++ N L+ T L K ++ L L TG++ ++ I H+
Sbjct: 69 -NWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEF-IPVHN 126
Query: 229 LPALEELHLMGNSISEIT-PVSSPIVQGFDNLQLLNLEDNCI 269
L LE LHL N IS I P + P NL++L+ ++N I
Sbjct: 127 LENLESLHLGSNHISSINLPENFPT----QNLKVLDFQNNAI 164
>pdb|2P0V|A Chain A, Crystal Structure Of Bt3781 Protein From Bacteroides
Thetaiotaomicron, Northeast Structural Genomics Target
Btr58
pdb|2P0V|B Chain B, Crystal Structure Of Bt3781 Protein From Bacteroides
Thetaiotaomicron, Northeast Structural Genomics Target
Btr58
Length = 489
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 347 YFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSE 385
Y I+AF + GN ++ D A++ SL + P L D+++++
Sbjct: 327 YGKIYAFEVDGFGNQLLXDDANVPSLIALPYLGDVKVTD 365
>pdb|3ON6|A Chain A, Crystal Structure Of An Exo-Alpha-1,6-Mannosidase
(Bacova_03626) From Bacteroides Ovatus At 1.70 A
Resolution
pdb|3ON6|B Chain B, Crystal Structure Of An Exo-Alpha-1,6-Mannosidase
(Bacova_03626) From Bacteroides Ovatus At 1.70 A
Resolution
Length = 461
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 327 CLLLGNS-----KKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDI 381
C L N KK +H Y I+AF + GN ++ D A++ SL + P L D+
Sbjct: 285 CTTLSNEVEAALKKYAVYNHPK---YGKIYAFEVDGFGNQLLXDDANVPSLIALPYLGDV 341
Query: 382 RLSE 385
++++
Sbjct: 342 KVND 345
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 228 SLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287
+L LEEL L GN + I P S QG +L+ L L +A E ++SLE+L
Sbjct: 176 ALVRLEELELSGNRLDLIRPGS---FQGLTSLRKLWLMHAQVAT-IERNAFDDLKSLEEL 231
Query: 288 YLNKNNLNRIYYPNNDTIHELVSAHESH 315
L+ NNL + + +H L H +H
Sbjct: 232 NLSHNNLMSLPHDLFTPLHRLERVHLNH 259
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 181 LPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQV 222
LP L L+L NN +S+ GLP LK ++++ L+ + + V
Sbjct: 240 LPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGV 281
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 228 SLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287
+L LEEL L GN + I P S QG +L+ L L +A E ++SLE+L
Sbjct: 176 ALVRLEELELSGNRLDLIRPGS---FQGLTSLRKLWLMHAQVAT-IERNAFDDLKSLEEL 231
Query: 288 YLNKNNLNRIYYPNNDTIHELVSAHESH 315
L+ NNL + + +H L H +H
Sbjct: 232 NLSHNNLMSLPHDLFTPLHRLERVHLNH 259
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 82/206 (39%), Gaps = 49/206 (23%)
Query: 124 IQDKFSKFEELTSAALPYLGVSSPG-ANIGTIVTNLKELDLTGNLLSD----WKDIGAFG 178
I F F+ L ++ G S+ G A I NLKELDL + + D W + F
Sbjct: 125 IAKSFKNFKVLVLSSCE--GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHW--LSHFP 180
Query: 179 EQLPALAVLNLSN-------NLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPA 231
+ +L LN+S + + + VT P LKS++ LN V ++ L P
Sbjct: 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLK---LN-RAVPLEKLATLLQRAPQ 236
Query: 232 LEELHLMGNSISEITP-VSSPI------------VQGF---------------DNLQLLN 263
LEEL G +E+ P V S + + GF L LN
Sbjct: 237 LEELG-TGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLN 295
Query: 264 LEDNCIAEWSEILKLCQIRSLEQLYL 289
L + + + LCQ L++L++
Sbjct: 296 LSYATVQSYDLVKLLCQCPKLQRLWV 321
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 31/140 (22%)
Query: 158 LKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGV 217
L LDL+ N L + + G+ LPAL VL++S N +T LP L ++R
Sbjct: 79 LGTLDLSHNQL---QSLPLLGQTLPALTVLDVSFN----RLTSLP-LGALR--------- 121
Query: 218 NWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILK 277
L L+EL+L GN + + P ++ L+ L+L +N + E L
Sbjct: 122 ----------GLGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNQLTELPAGL- 167
Query: 278 LCQIRSLEQLYLNKNNLNRI 297
L + +L+ L L +N+L I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 31/140 (22%)
Query: 158 LKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGV 217
L LDL+ N L + + G+ LPAL VL++S N +T LP L ++R
Sbjct: 79 LGTLDLSHNQL---QSLPLLGQTLPALTVLDVSFN----RLTSLP-LGALR--------- 121
Query: 218 NWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILK 277
L L+EL+L GN + + P ++ L+ L+L +N + E L
Sbjct: 122 ----------GLGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNNLTELPAGL- 167
Query: 278 LCQIRSLEQLYLNKNNLNRI 297
L + +L+ L L +N+L I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 31/140 (22%)
Query: 158 LKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGV 217
L LDL+ N L + + G+ LPAL VL++S N +T LP L ++R
Sbjct: 79 LGTLDLSHNQL---QSLPLLGQTLPALTVLDVSFN----RLTSLP-LGALR--------- 121
Query: 218 NWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILK 277
L L+EL+L GN + + P ++ L+ L+L +N + E L
Sbjct: 122 ----------GLGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNQLTELPAGL- 167
Query: 278 LCQIRSLEQLYLNKNNLNRI 297
L + +L+ L L +N+L I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187
>pdb|1A41|A Chain A, Type 1-Topoisomerase Catalytic Fragment From Vaccinia
Virus
Length = 234
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 76 HNLSPGISLPEALRVRYRGESSKEEEDEMYVLSASNKHVSI-------ELVGKDKIQDKF 128
+ L+ + + +R+ +E + + +L+ NKH+ I + VGKDK+ +F
Sbjct: 35 YQLAVFMLMETMFFIRFGKMKYLKENETVGLLTLKNKHIEISPDEIVIKFVGKDKVSHEF 94
Query: 129 --SKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAV 186
K L L SSP + ++ K + KD+ +G L
Sbjct: 95 VVHKSNRLYKPLLKLTDDSSPEEFLFNKLSERKVYECIKQFGIRIKDLRTYGVNYTFL-- 152
Query: 187 LNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEI 245
N N+ K ++ LP K + L + T E++ H+ P++ + M +I E+
Sbjct: 153 YNFWTNV--KSISPLPSPKKLIALTIKQTA------EVVGHT-PSISKRAYMATTILEM 202
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 31/140 (22%)
Query: 158 LKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGV 217
L LDL+ N L + + G+ LPAL VL++S N +T LP L ++R
Sbjct: 79 LGTLDLSHNQL---QSLPLLGQTLPALTVLDVSFN----RLTSLP-LGALR--------- 121
Query: 218 NWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILK 277
L L+EL+L GN + + P ++ L+ L+L +N + E L
Sbjct: 122 ----------GLGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNDLTELPAGL- 167
Query: 278 LCQIRSLEQLYLNKNNLNRI 297
L + +L+ L L +N+L I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 31/140 (22%)
Query: 158 LKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGV 217
L LDL+ N L + + G+ LPAL VL++S N +T LP L ++R
Sbjct: 79 LGTLDLSHNQL---QSLPLLGQTLPALTVLDVSFN----RLTSLP-LGALR--------- 121
Query: 218 NWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILK 277
L L+EL+L GN + + P ++ L+ L+L +N + E L
Sbjct: 122 ----------GLGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNNLTELPAGL- 167
Query: 278 LCQIRSLEQLYLNKNNLNRI 297
L + +L+ L L +N+L I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187
>pdb|2H7G|X Chain X, Structure Of Variola Topoisomerase Non-Covalently Bound To
Dna
pdb|3IGC|A Chain A, Smallpox Virus Topoisomerase-Dna Transition State
Length = 314
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 90 VRYRGESSKEEEDEMYVLSASNKHVSI-------ELVGKDKIQDKF--SKFEELTSAALP 140
+R+ +E + + +L+ NKH+ I + VGKDK+ +F K L L
Sbjct: 129 IRFGKMKYLKENETVGLLTLKNKHIEISPDKIVIKFVGKDKVSHEFVVHKSNRLYKPLLK 188
Query: 141 YLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG 200
SSP + ++ K + KD+ +G L N N+ K ++
Sbjct: 189 LTDDSSPEEFLFNKLSERKVYESIKQFGIRIKDLRTYGVNYTFL--YNFWTNV--KSISP 244
Query: 201 LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEI 245
LP K + L + T E++ H+ P++ + M +I E+
Sbjct: 245 LPSPKKLIALTIKQTA------EVVGHT-PSISKRAYMATTILEM 282
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 31/140 (22%)
Query: 158 LKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGV 217
L LDL+ N L + + G+ LPAL VL++S N +T LP L ++R
Sbjct: 79 LGTLDLSHNQL---QSLPLLGQTLPALTVLDVSFN----RLTSLP-LGALR--------- 121
Query: 218 NWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILK 277
L L+EL+L GN + + P ++ L+ L+L +N + E L
Sbjct: 122 ----------GLGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNNLTELPAGL- 167
Query: 278 LCQIRSLEQLYLNKNNLNRI 297
L + +L+ L L +N+L I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 31/140 (22%)
Query: 158 LKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGV 217
L LDL+ N L + + G+ LPAL VL++S N +T LP L ++R
Sbjct: 79 LGTLDLSHNQL---QSLPLLGQTLPALTVLDVSFN----RLTSLP-LGALR--------- 121
Query: 218 NWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILK 277
L L+EL+L GN + + P ++ L+ L+L +N + E L
Sbjct: 122 ----------GLGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNNLTELPAGL- 167
Query: 278 LCQIRSLEQLYLNKNNLNRI 297
L + +L+ L L +N+L I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187
>pdb|2H7F|X Chain X, Structure Of Variola Topoisomerase Covalently Bound To Dna
Length = 314
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 20/165 (12%)
Query: 90 VRYRGESSKEEEDEMYVLSASNKHVSI-------ELVGKDKIQDKF--SKFEELTSAALP 140
+R+ +E + + +L+ NKH+ I + VGKDK+ +F K L L
Sbjct: 129 IRFGKMKYLKENETVGLLTLKNKHIEISPDKIVIKFVGKDKVSHEFVVHKSNRLYKPLLK 188
Query: 141 YLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG 200
SSP + ++ K + KD+ +G L N N+ K ++
Sbjct: 189 LTDDSSPEEFLFNKLSERKVYESIKQFGIRIKDLRTYGVNYTFL--YNFWTNV--KSISP 244
Query: 201 LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEI 245
LP K + L + T E++ H+ P++ + M +I E+
Sbjct: 245 LPSPKKLIALTIKQTA------EVVGHT-PSISKRAXMATTILEM 282
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 31/140 (22%)
Query: 158 LKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGV 217
L LDL+ N L + + G+ LPAL VL++S N +T LP L ++R
Sbjct: 80 LGTLDLSHNQL---QSLPLLGQTLPALTVLDVSFN----RLTSLP-LGALR--------- 122
Query: 218 NWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILK 277
L L+EL+L GN + + P ++ L+ L+L +N + E L
Sbjct: 123 ----------GLGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNNLTELPAGL- 168
Query: 278 LCQIRSLEQLYLNKNNLNRI 297
L + +L+ L L +N+L I
Sbjct: 169 LNGLENLDTLLLQENSLYTI 188
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 31/140 (22%)
Query: 158 LKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGV 217
L LDL+ N L + + G+ LPAL VL++S N +T LP L ++R
Sbjct: 79 LGTLDLSHNQL---QSLPLLGQTLPALTVLDVSFN----RLTSLP-LGALR--------- 121
Query: 218 NWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILK 277
L L+EL+L GN + + P ++ L+ L+L +N + E L
Sbjct: 122 ----------GLGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNQLTELPAGL- 167
Query: 278 LCQIRSLEQLYLNKNNLNRI 297
L + +L+ L L +N+L I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 177 FGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELH 236
+G L +L++ + NL + + L +R L L+ ++ ++ +L H L L+E+
Sbjct: 222 YGLNLTSLSITHC--NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML-HELLRLQEIQ 278
Query: 237 LMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNL 294
L+G ++ + P + +G + L++LN+ N + E + + +LE L L+ N L
Sbjct: 279 LVGGQLAVVEPYA---FRGLNYLRVLNVSGNQLTTLEESV-FHSVGNLETLILDSNPL 332
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 31/140 (22%)
Query: 158 LKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGV 217
L LDL+ N L + + G+ LPAL VL++S N +T LP L ++R
Sbjct: 79 LGTLDLSHNQL---QSLPLLGQTLPALTVLDVSFN----RLTSLP-LGALR--------- 121
Query: 218 NWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILK 277
L L+EL+L GN + + P ++ L+ L+L +N + E L
Sbjct: 122 ----------GLGELQELYLKGNELKTLPPG---LLTPTPKLEKLSLANNQLTELPAGL- 167
Query: 278 LCQIRSLEQLYLNKNNLNRI 297
L + +L+ L L +N+L I
Sbjct: 168 LNGLENLDTLLLQENSLYTI 187
>pdb|3P2C|A Chain A, Crystal Structure Of An Exo-Alpha-1,6-Mannosidase
(Bacova_03347) From Bacteroides Ovatus At 1.60 A
Resolution
pdb|3P2C|B Chain B, Crystal Structure Of An Exo-Alpha-1,6-Mannosidase
(Bacova_03347) From Bacteroides Ovatus At 1.60 A
Resolution
Length = 463
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 347 YFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRF 399
Y I+AF + GN+ + D A++ SL + P L D+ V+DP RF
Sbjct: 309 YGKIYAFEVDGFGNHHLXDDANVPSLLAXPYLGDVN-----VNDPIYQNTRRF 356
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 30/124 (24%)
Query: 147 PGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206
P AN T + L LD+ N +S + ++LP L VLNL +N +S QL
Sbjct: 46 PAANF-TRYSQLTSLDVGFNTISKLE--PELCQKLPMLKVLNLQHNELS-------QLSD 95
Query: 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLED 266
CT L ELHLM NSI +I ++P V+ NL L+L
Sbjct: 96 KTFAF--CTN---------------LTELHLMSNSIQKIK--NNPFVKQ-KNLITLDLSH 135
Query: 267 NCIA 270
N ++
Sbjct: 136 NGLS 139
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 30/124 (24%)
Query: 147 PGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206
P AN T + L LD+ N +S + ++LP L VLNL +N +S QL
Sbjct: 51 PAANF-TRYSQLTSLDVGFNTISKLEP--ELCQKLPMLKVLNLQHNELS-------QLSD 100
Query: 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLED 266
CT L ELHLM NSI +I ++P V+ NL L+L
Sbjct: 101 KTFAF--CTN---------------LTELHLMSNSIQKIK--NNPFVKQ-KNLITLDLSH 140
Query: 267 NCIA 270
N ++
Sbjct: 141 NGLS 144
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 30/124 (24%)
Query: 147 PGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206
P AN T + L LD+ N +S + ++LP L VLNL +N +S QL
Sbjct: 41 PAANF-TRYSQLTSLDVGFNTISKLE--PELCQKLPMLKVLNLQHNELS-------QLSD 90
Query: 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLED 266
CT L ELHLM NSI +I ++P V+ NL L+L
Sbjct: 91 KTFAF--CTN---------------LTELHLMSNSIQKIK--NNPFVKQ-KNLITLDLSH 130
Query: 267 NCIA 270
N ++
Sbjct: 131 NGLS 134
>pdb|1A4Y|A Chain A, Ribonuclease Inhibitor-Angiogenin Complex
pdb|1A4Y|D Chain D, Ribonuclease Inhibitor-Angiogenin Complex
pdb|2BEX|A Chain A, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
pdb|2BEX|B Chain B, Crystal Structure Of Placental Ribonuclease Inhibitor In
Complex With Human Eosinophil Derived Neurotoxin At 2a
Resolution
Length = 460
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 161 LDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKE-----VTGL--PQLKSIRILVLN 213
LD G + KDI + PALA LNL +N + + GL P K ++ + N
Sbjct: 34 LDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93
Query: 214 C--TGVNWMQVEILKHSLPALEELHLMGN 240
C TG + +LP L+ELHL N
Sbjct: 94 CCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
>pdb|1N9G|A Chain A, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|C Chain C, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
pdb|1N9G|F Chain F, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p
Heterodimer From Candida Tropicalis
Length = 386
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 18/156 (11%)
Query: 150 NIGTIVTNLKELDLTGNLLSDWKDIGAFG-------EQLPALAVLNLSNNLMSKEVTGLP 202
N+ +V +LKEL T + D + FG +Q A L L N + K TG+
Sbjct: 226 NLDEVVASLKELGATQVITEDQNNSKEFGPTIKEWIKQSGGEAKLAL-NCVGGKSSTGIA 284
Query: 203 QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLL 262
+ + L+L G+++ V I SL + G ++E+ +N +L
Sbjct: 285 RKLNNNGLMLTYGGMSFQPVTI-PTSLYIFKNFTSAGFWVTELLK---------NNKELK 334
Query: 263 NLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIY 298
N I W E KL +S+E LY L+ +Y
Sbjct: 335 TSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELY 370
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 63/162 (38%), Gaps = 36/162 (22%)
Query: 229 LPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288
L + EL L GN + ++ ++ G +++ L+L I +++ L + +L+ LY
Sbjct: 84 LTKITELELSGNPLKNVSAIA-----GLQSIKTLDLTSTQI---TDVTPLAGLSNLQVLY 135
Query: 289 LNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYF 348
L+ N + I T + +S + P NL L
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLT------------------- 176
Query: 349 LIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 390
+L A N ++ I L S P L+++ L N +SD
Sbjct: 177 -----TLKADDN----KISDISPLASLPNLIEVHLKNNQISD 209
>pdb|1Z7X|W Chain W, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|1Z7X|Y Chain Y, X-Ray Structure Of Human Ribonuclease Inhibitor Complexed
With Ribonuclease I
pdb|2Q4G|W Chain W, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
pdb|2Q4G|Y Chain Y, Ensemble Refinement Of The Protein Crystal Structure Of
Human Ribonuclease Inhibitor Complexed With Ribonuclease
I
Length = 461
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 161 LDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKE-----VTGL--PQLKSIRILVLN 213
LD G + KDI + PALA LNL +N + + GL P K ++ + N
Sbjct: 35 LDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 94
Query: 214 C--TGVNWMQVEILKHSLPALEELHLMGN 240
C TG + +LP L+ELHL N
Sbjct: 95 CCLTGAGCGVLSSTLRTLPTLQELHLSDN 123
>pdb|1IXD|A Chain A, Solution Structure Of The Cap-Gly Domain From Human
Cylindromatosis Tomour-Suppressor Cyld
Length = 104
Score = 28.1 bits (61), Expect = 9.3, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 25 GTVKYVGEVQGYSGTWLGVDW-DYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSP 80
G ++++G+ G + G++ D G DG+ G RYF +K+ FV++ + P
Sbjct: 34 GVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKA-LFVKLKSCRP 89
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVL 187
F K LT L + + S + +TNL ELDL+ N L + G F ++L L L
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-GVF-DKLTQLKDL 186
Query: 188 NLSNNLMSKEVTGL-PQLKSIRILVLN-------CTGVNWMQVEILKHS 228
L N + G+ +L S++ + L+ C G+ ++ I KHS
Sbjct: 187 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHS 235
>pdb|1H0K|A Chain A, Enoyl Thioester Reductase 2
pdb|1H0K|B Chain B, Enoyl Thioester Reductase 2
Length = 364
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 18/156 (11%)
Query: 150 NIGTIVTNLKELDLTGNLLSDWKDIGAFG-------EQLPALAVLNLSNNLMSKEVTGLP 202
N+ +V +LKEL T + D + FG +Q A L L N + K TG+
Sbjct: 204 NLDEVVASLKELGATQVITEDQNNSKEFGPTIKEWIKQSGGEAKLAL-NCVGGKSSTGIA 262
Query: 203 QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLL 262
+ + L+L G+++ V I SL + G ++E+ +N +L
Sbjct: 263 RKLNNNGLMLTYGGMSFQPVTI-PTSLYIFKNFTSAGFWVTELLK---------NNKELK 312
Query: 263 NLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIY 298
N I W E KL +S+E LY L+ +Y
Sbjct: 313 TSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELY 348
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,904,938
Number of Sequences: 62578
Number of extensions: 549332
Number of successful extensions: 1577
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 1461
Number of HSP's gapped (non-prelim): 156
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)