Query 014792
Match_columns 418
No_of_seqs 321 out of 3671
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:33:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3207 Beta-tubulin folding c 100.0 7.5E-56 1.6E-60 407.0 13.4 361 8-418 2-366 (505)
2 KOG2982 Uncharacterized conser 99.9 1.3E-25 2.8E-30 198.3 5.4 245 130-418 43-291 (418)
3 KOG4194 Membrane glycoprotein 99.9 2E-23 4.3E-28 199.2 1.5 253 126-413 143-399 (873)
4 PLN00113 leucine-rich repeat r 99.9 1.5E-21 3.2E-26 212.4 14.9 268 124-415 85-365 (968)
5 PLN00113 leucine-rich repeat r 99.9 2.5E-21 5.5E-26 210.6 13.2 268 124-415 109-389 (968)
6 KOG0444 Cytoskeletal regulator 99.8 5E-23 1.1E-27 197.9 -1.1 266 123-415 94-371 (1255)
7 KOG4194 Membrane glycoprotein 99.8 4.9E-22 1.1E-26 189.8 4.6 266 126-414 96-373 (873)
8 PF01302 CAP_GLY: CAP-Gly doma 99.8 5E-20 1.1E-24 131.3 8.4 67 11-78 1-68 (69)
9 KOG0444 Cytoskeletal regulator 99.8 1.7E-21 3.7E-26 187.5 -2.9 258 115-412 38-297 (1255)
10 PRK15387 E3 ubiquitin-protein 99.8 7.4E-18 1.6E-22 173.2 13.3 236 116-391 208-460 (788)
11 KOG0472 Leucine-rich repeat pr 99.7 3.6E-20 7.9E-25 170.0 -8.9 225 123-391 59-290 (565)
12 KOG3206 Alpha-tubulin folding 99.7 2.1E-17 4.5E-22 137.3 7.0 76 9-86 149-226 (234)
13 KOG0472 Leucine-rich repeat pr 99.7 1.8E-19 3.8E-24 165.6 -7.2 209 121-390 103-311 (565)
14 PLN03210 Resistant to P. syrin 99.7 6.3E-16 1.4E-20 169.6 16.1 253 120-415 622-902 (1153)
15 PRK15387 E3 ubiquitin-protein 99.7 5.4E-16 1.2E-20 159.6 14.0 236 132-415 201-454 (788)
16 KOG0617 Ras suppressor protein 99.7 9.5E-19 2.1E-23 143.3 -5.4 159 129-297 30-188 (264)
17 KOG0618 Serine/threonine phosp 99.7 3.7E-18 8.1E-23 171.4 -3.9 123 231-388 360-488 (1081)
18 cd00116 LRR_RI Leucine-rich re 99.7 1.3E-16 2.7E-21 151.8 6.7 269 128-414 19-315 (319)
19 PF14580 LRR_9: Leucine-rich r 99.7 1.1E-16 2.5E-21 136.2 5.5 135 228-418 17-152 (175)
20 cd00116 LRR_RI Leucine-rich re 99.6 4E-16 8.6E-21 148.4 9.0 224 123-388 72-319 (319)
21 PRK15370 E3 ubiquitin-protein 99.6 7E-16 1.5E-20 159.5 9.7 238 117-390 186-429 (754)
22 KOG0618 Serine/threonine phosp 99.6 1.3E-17 2.8E-22 167.6 -3.0 220 156-415 241-485 (1081)
23 PLN03210 Resistant to P. syrin 99.6 9.9E-15 2.1E-19 160.3 18.7 248 134-416 591-879 (1153)
24 KOG4237 Extracellular matrix p 99.6 5.1E-17 1.1E-21 149.2 -0.6 240 117-393 54-363 (498)
25 PRK15370 E3 ubiquitin-protein 99.6 4E-15 8.7E-20 153.9 11.3 242 132-414 178-423 (754)
26 KOG0617 Ras suppressor protein 99.5 1.5E-16 3.3E-21 130.5 -6.0 184 150-391 28-214 (264)
27 COG5244 NIP100 Dynactin comple 99.5 5.6E-14 1.2E-18 130.6 6.7 68 6-77 1-68 (669)
28 KOG1259 Nischarin, modulator o 99.4 2.6E-14 5.6E-19 127.3 0.6 188 156-405 214-425 (490)
29 KOG1909 Ran GTPase-activating 99.4 6.3E-14 1.4E-18 127.4 0.5 142 156-297 92-256 (382)
30 KOG4237 Extracellular matrix p 99.4 4.6E-14 1E-18 130.0 -1.5 148 136-293 50-199 (498)
31 KOG0971 Microtubule-associated 99.3 2.6E-12 5.6E-17 127.9 6.7 72 5-78 2-73 (1243)
32 KOG3207 Beta-tubulin folding c 99.3 1.2E-12 2.6E-17 122.3 3.9 176 121-297 161-341 (505)
33 KOG1259 Nischarin, modulator o 99.3 7.5E-13 1.6E-17 118.1 2.5 131 156-297 284-414 (490)
34 KOG0532 Leucine-rich repeat (L 99.3 8.6E-14 1.9E-18 133.7 -4.4 173 158-391 77-249 (722)
35 PF14580 LRR_9: Leucine-rich r 99.3 2.8E-12 6E-17 109.4 4.9 127 156-290 19-148 (175)
36 COG4886 Leucine-rich repeat (L 99.3 4.8E-12 1E-16 124.1 5.8 195 136-391 97-292 (394)
37 KOG1909 Ran GTPase-activating 99.3 5.8E-12 1.3E-16 114.7 5.4 265 107-415 4-307 (382)
38 KOG0532 Leucine-rich repeat (L 99.2 5.2E-13 1.1E-17 128.4 -5.4 171 131-333 74-244 (722)
39 COG4886 Leucine-rich repeat (L 99.1 5E-11 1.1E-15 116.9 6.1 177 126-333 110-287 (394)
40 KOG1859 Leucine-rich repeat pr 99.1 5.9E-12 1.3E-16 124.2 -2.4 189 150-402 104-302 (1096)
41 KOG4568 Cytoskeleton-associate 99.1 8E-11 1.7E-15 118.5 3.6 73 1-76 10-82 (664)
42 KOG0531 Protein phosphatase 1, 99.0 1.1E-10 2.3E-15 115.1 0.2 224 128-392 91-321 (414)
43 KOG2982 Uncharacterized conser 98.9 5.8E-09 1.3E-13 93.4 8.1 198 120-331 85-287 (418)
44 KOG1644 U2-associated snRNP A' 98.9 1.2E-09 2.5E-14 92.6 3.2 130 232-417 21-151 (233)
45 KOG0531 Protein phosphatase 1, 98.9 3.6E-10 7.8E-15 111.4 0.1 217 129-389 69-290 (414)
46 KOG2120 SCF ubiquitin ligase, 98.7 6.9E-10 1.5E-14 99.3 -2.7 183 133-333 186-373 (419)
47 KOG1859 Leucine-rich repeat pr 98.7 2E-09 4.3E-14 106.8 -1.4 120 258-413 165-286 (1096)
48 KOG4658 Apoptotic ATPase [Sign 98.7 2.5E-08 5.3E-13 105.6 6.5 71 319-392 713-786 (889)
49 PF13855 LRR_8: Leucine rich r 98.7 1.6E-08 3.4E-13 70.9 3.4 61 230-294 1-61 (61)
50 KOG2120 SCF ubiquitin ligase, 98.6 9.2E-09 2E-13 92.2 1.6 168 122-292 200-373 (419)
51 PLN03150 hypothetical protein; 98.6 8.6E-08 1.9E-12 99.0 7.0 107 157-269 419-527 (623)
52 PF13855 LRR_8: Leucine rich r 98.6 5.5E-08 1.2E-12 68.1 3.5 61 282-388 1-61 (61)
53 KOG2123 Uncharacterized conser 98.6 4.9E-09 1.1E-13 93.1 -2.3 111 256-417 18-128 (388)
54 PLN03150 hypothetical protein; 98.6 1.1E-07 2.4E-12 98.2 7.2 107 183-294 419-527 (623)
55 KOG4341 F-box protein containi 98.5 3.7E-08 8.1E-13 92.2 1.6 173 123-298 155-337 (483)
56 COG5238 RNA1 Ran GTPase-activa 98.5 1.3E-07 2.8E-12 83.9 4.3 189 108-297 5-229 (388)
57 KOG4658 Apoptotic ATPase [Sign 98.3 4.4E-07 9.4E-12 96.3 5.0 199 132-336 545-783 (889)
58 KOG1644 U2-associated snRNP A' 98.2 1.5E-06 3.2E-11 74.1 4.9 126 135-291 22-149 (233)
59 KOG2739 Leucine-rich acidic nu 98.2 1.1E-06 2.4E-11 77.9 4.2 113 255-416 41-153 (260)
60 COG5238 RNA1 Ran GTPase-activa 98.2 2.2E-06 4.8E-11 76.2 5.5 200 122-333 48-282 (388)
61 KOG3665 ZYG-1-like serine/thre 98.2 1.1E-06 2.3E-11 91.1 3.2 134 182-331 122-258 (699)
62 KOG4341 F-box protein containi 98.1 1.3E-07 2.9E-12 88.6 -3.4 262 128-412 186-458 (483)
63 KOG3665 ZYG-1-like serine/thre 98.1 3.4E-06 7.3E-11 87.4 6.4 137 132-271 122-264 (699)
64 KOG4568 Cytoskeleton-associate 98.1 6.7E-07 1.5E-11 90.6 1.2 71 6-79 152-222 (664)
65 KOG3556 Familial cylindromatos 98.1 5.5E-06 1.2E-10 79.1 6.2 76 9-85 236-319 (724)
66 KOG4579 Leucine-rich repeat (L 98.1 4.5E-07 9.7E-12 72.5 -1.2 92 124-218 45-136 (177)
67 KOG4579 Leucine-rich repeat (L 98.0 2.9E-07 6.2E-12 73.5 -2.9 86 157-246 54-139 (177)
68 PF12799 LRR_4: Leucine Rich r 98.0 5.3E-06 1.1E-10 53.5 3.3 39 156-197 1-39 (44)
69 KOG2123 Uncharacterized conser 98.0 4.7E-07 1E-11 80.7 -3.0 107 203-329 17-123 (388)
70 PF12799 LRR_4: Leucine Rich r 97.9 9E-06 1.9E-10 52.4 2.7 38 258-297 2-39 (44)
71 KOG0241 Kinesin-like protein [ 97.8 1.8E-05 3.9E-10 80.7 4.2 70 6-82 1628-1697(1714)
72 PRK15386 type III secretion pr 97.7 0.00024 5.1E-09 68.5 10.0 143 124-293 44-188 (426)
73 KOG2739 Leucine-rich acidic nu 97.4 2.6E-05 5.6E-10 69.4 -0.4 105 181-289 42-150 (260)
74 PRK15386 type III secretion pr 97.2 0.002 4.4E-08 62.2 9.6 116 155-297 51-171 (426)
75 KOG1947 Leucine rich repeat pr 97.0 0.00047 1E-08 69.2 3.3 113 155-269 187-307 (482)
76 KOG1947 Leucine rich repeat pr 96.9 0.00068 1.5E-08 68.0 3.4 116 128-243 184-308 (482)
77 KOG3763 mRNA export factor TAP 96.8 0.00098 2.1E-08 65.4 3.1 96 279-418 215-313 (585)
78 KOG4308 LRR-containing protein 96.3 0.0002 4.3E-09 71.2 -5.1 182 116-297 99-305 (478)
79 PF13306 LRR_5: Leucine rich r 96.0 0.019 4.1E-07 46.3 6.3 36 253-290 31-66 (129)
80 PF13306 LRR_5: Leucine rich r 95.9 0.02 4.3E-07 46.2 6.0 88 201-297 8-95 (129)
81 KOG4308 LRR-containing protein 95.6 0.00031 6.8E-09 69.9 -7.1 140 158-297 89-248 (478)
82 PRK10708 hypothetical protein; 95.0 0.16 3.4E-06 33.5 6.3 57 10-75 2-60 (62)
83 PF10781 DSRB: Dextransucrase 94.6 0.2 4.3E-06 33.1 6.1 58 10-76 2-61 (62)
84 PF00560 LRR_1: Leucine Rich R 93.6 0.033 7.1E-07 29.8 0.9 15 184-198 2-16 (22)
85 PTZ00243 ABC transporter; Prov 93.1 0.12 2.5E-06 59.6 5.1 60 9-68 125-200 (1560)
86 KOG3763 mRNA export factor TAP 92.7 0.14 3.1E-06 50.7 4.4 84 153-236 215-307 (585)
87 PF13504 LRR_7: Leucine rich r 91.4 0.14 2.9E-06 25.4 1.4 11 259-269 3-13 (17)
88 KOG3864 Uncharacterized conser 90.6 0.064 1.4E-06 46.3 -0.4 20 370-389 170-189 (221)
89 KOG0473 Leucine-rich repeat pr 89.9 0.021 4.7E-07 50.3 -3.9 89 127-219 37-125 (326)
90 KOG3864 Uncharacterized conser 88.7 0.18 4E-06 43.6 0.9 82 205-291 101-185 (221)
91 PF13516 LRR_6: Leucine Rich r 87.6 0.25 5.4E-06 26.8 0.7 15 156-170 2-16 (24)
92 KOG0473 Leucine-rich repeat pr 87.5 0.016 3.4E-07 51.1 -6.3 87 253-389 38-124 (326)
93 smart00369 LRR_TYP Leucine-ric 84.4 0.94 2E-05 25.0 2.1 19 181-199 1-19 (26)
94 smart00370 LRR Leucine-rich re 84.4 0.94 2E-05 25.0 2.1 19 181-199 1-19 (26)
95 PF09926 DUF2158: Uncharacteri 84.2 4.2 9.1E-05 27.1 5.4 42 9-51 1-42 (53)
96 PF07154 DUF1392: Protein of u 77.9 3.2 6.9E-05 33.5 3.6 43 6-49 85-128 (150)
97 smart00365 LRR_SD22 Leucine-ri 77.8 2 4.3E-05 24.0 1.8 17 281-297 1-17 (26)
98 PHA02146 hypothetical protein 76.3 3.3 7.1E-05 28.8 2.9 46 8-53 2-55 (86)
99 PF11948 DUF3465: Protein of u 73.6 6.8 0.00015 31.4 4.4 21 41-61 105-130 (131)
100 smart00368 LRR_RI Leucine rich 69.5 6.7 0.00015 22.1 2.7 17 206-222 3-19 (28)
101 smart00364 LRR_BAC Leucine-ric 69.5 3.5 7.5E-05 23.0 1.4 16 183-198 3-18 (26)
102 smart00446 LRRcap occurring C- 63.7 6.2 0.00013 22.0 1.7 20 396-415 3-22 (26)
103 smart00367 LRR_CC Leucine-rich 60.3 14 0.0003 20.3 2.8 15 375-389 1-15 (26)
104 cd01736 LSm14_N LSm14 (also kn 50.2 34 0.00074 24.5 4.0 22 9-34 3-24 (74)
105 TIGR00864 PCC polycystin catio 42.1 17 0.00037 43.8 2.3 35 360-395 4-38 (2740)
106 PF12701 LSM14: Scd6-like Sm d 34.1 42 0.00091 25.5 2.7 24 6-33 2-25 (96)
107 PF13403 Hint_2: Hint domain 31.5 62 0.0013 26.7 3.6 25 7-33 19-43 (147)
108 PRK04306 50S ribosomal protein 30.9 49 0.0011 25.2 2.6 35 7-45 33-77 (98)
109 PF08750 CNP1: CNP1-like famil 29.9 87 0.0019 25.7 4.0 40 5-48 33-77 (139)
110 PF00924 MS_channel: Mechanose 29.4 50 0.0011 28.7 2.9 23 7-32 59-81 (206)
111 PF10816 DUF2760: Domain of un 29.2 1.7E+02 0.0036 23.3 5.2 39 10-49 63-109 (125)
112 KOG4242 Predicted myosin-I-bin 26.0 2.4E+02 0.0052 28.3 6.8 19 372-390 436-454 (553)
113 PRK04980 hypothetical protein; 23.9 1E+02 0.0022 23.8 3.2 22 7-28 30-53 (102)
114 PF14801 GCD14_N: tRNA methylt 23.6 65 0.0014 21.5 1.8 46 8-56 5-52 (54)
115 PF07723 LRR_2: Leucine Rich R 22.5 65 0.0014 17.8 1.4 13 158-170 2-14 (26)
116 TIGR00864 PCC polycystin catio 21.9 61 0.0013 39.4 2.4 33 236-271 1-33 (2740)
117 TIGR00739 yajC preprotein tran 20.9 1.5E+02 0.0032 21.9 3.5 23 7-31 36-58 (84)
118 PRK10334 mechanosensitive chan 20.5 1.3E+02 0.0028 28.1 3.8 23 7-32 128-150 (286)
119 PRK06531 yajC preprotein trans 20.2 1.4E+02 0.003 23.5 3.4 23 7-31 35-57 (113)
No 1
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.5e-56 Score=406.99 Aligned_cols=361 Identities=31% Similarity=0.528 Sum_probs=314.4
Q ss_pred CCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCC-CCCCCEECCEEeeecCCCCccccccccccCCCCcchh
Q 014792 8 SYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGN-GKHDGSINGVRYFQAKSQKSGSFVRVHNLSPGISLPE 86 (418)
Q Consensus 8 ~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~-gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~~~s~~~ 86 (418)
.+.||+||.+.| .+|||||+|.|+|+++.|+|||||||+ |||+|.+.|++||++++|+.|||+|+.++..+.++..
T Consensus 2 ~~~IG~RvkI~~---~~~Tvr~iG~V~g~~~~w~GvEWDd~~RGKH~G~vdgk~YF~~q~P~GGSFik~~kV~~p~d~~~ 78 (505)
T KOG3207|consen 2 TMEIGTRVKIGG---EIATVRYIGEVEGNNSKWYGVEWDDPVRGKHDGIVDGKRYFQTQHPNGGSFIKPGKVKFPTDLLR 78 (505)
T ss_pred ceeccceEEEcC---EEEEEEEEEEEcCCCCcceeeEecCCCccccCceecceeeeeeecCCCccccCCccCCCCccHHH
Confidence 578999999976 789999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCcccccceEEEeeCCCceEEEEechhhHHHHHhcccccceecccCcCcCCCCC-chhhhcCCccEEEcCC
Q 014792 87 ALRVRYRGESSKEEEDEMYVLSASNKHVSIELVGKDKIQDKFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTG 165 (418)
Q Consensus 87 ~l~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~ 165 (418)
+++++|......+.+. ....+.+++. ++++|++++....+++++|+++.|.++.+..++. ...+.|++++.|||+.
T Consensus 79 t~~ery~e~~s~~sd~-~~~~si~nK~--vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~ 155 (505)
T KOG3207|consen 79 TFKERYYEKYSYSSDL-ESVLSISNKQ--VEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSR 155 (505)
T ss_pred HHHHHHHHhhcCCcch-hhHhhhcCce--eEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchh
Confidence 9999998875544433 3334555665 8999999999999999999999999999988875 4566679999999999
Q ss_pred CCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCC--CCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCC
Q 014792 166 NLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG--LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSIS 243 (418)
Q Consensus 166 n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 243 (418)
|.+..|..+.+++.+||+|+.|+|+.|++.....+ -..++.|+.|.++.|.++|.++...+..+|+|+.|+|..|...
T Consensus 156 NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~ 235 (505)
T KOG3207|consen 156 NLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII 235 (505)
T ss_pred hhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc
Confidence 99999999999999999999999999998865553 3367899999999999999999999999999999999999522
Q ss_pred ccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCC
Q 014792 244 EITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQ 323 (418)
Q Consensus 244 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 323 (418)
.+... ....+..|+.|||++|.+.+.+.....+.++.|+.|+++.+.|..+..++... .+....++
T Consensus 236 ~~~~~---~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s-----------~~kt~~f~ 301 (505)
T KOG3207|consen 236 LIKAT---STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVES-----------LDKTHTFP 301 (505)
T ss_pred ceecc---hhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccc-----------hhhhcccc
Confidence 22111 24456899999999999999887677889999999999999999886665421 12246789
Q ss_pred CCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHH
Q 014792 324 NLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIA 403 (418)
Q Consensus 324 ~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~ 403 (418)
+|+.|+++ .|.|.+|+++..+..+++|+.|.+..|++..+.. .+...+||
T Consensus 302 kL~~L~i~----------------------------~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~--~a~~~VIA 351 (505)
T KOG3207|consen 302 KLEYLNIS----------------------------ENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD--TAKLLVIA 351 (505)
T ss_pred cceeeecc----------------------------cCccccccccchhhccchhhhhhccccccccccc--ceeEEeee
Confidence 99999999 9999999999999999999999999999987652 66777899
Q ss_pred hhCCceeecCcccCC
Q 014792 404 RLGKIKILNGSEVNS 418 (418)
Q Consensus 404 ~l~~L~~Ln~s~i~~ 418 (418)
++++|..||...|.|
T Consensus 352 r~~~l~~LN~~di~p 366 (505)
T KOG3207|consen 352 RISQLVKLNDVDISP 366 (505)
T ss_pred ehhhhhhhcccccCh
Confidence 999999999998875
No 2
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.92 E-value=1.3e-25 Score=198.26 Aligned_cols=245 Identities=40% Similarity=0.619 Sum_probs=209.5
Q ss_pred cccccceecccCcCcCCCCC--chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCC-CCCCC
Q 014792 130 KFEELTSAALPYLGVSSPGA--NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGL-PQLKS 206 (418)
Q Consensus 130 ~l~~L~~L~L~~~~i~~~~~--~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l-~~l~~ 206 (418)
....++.+.+.++.|..++. .++..++.++.|||.+|.|++|+++..++.+||.|++|+++.|.++..+..+ ....+
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 34456677888888888777 6777789999999999999999999999999999999999999999887776 47889
Q ss_pred ccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCC-CCCCC
Q 014792 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ-IRSLE 285 (418)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~-l~~L~ 285 (418)
|++|.|++..+.|.....++..+|.+++|+++.|.++.+..+....-..-+.+++|.+..|....|..+..++. +|++.
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 99999999999999999999999999999999997654432211111123578899999998888876645554 89999
Q ss_pred EEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCC
Q 014792 286 QLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIED 365 (418)
Q Consensus 286 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~ 365 (418)
.+.+..|++++...... +..++.+..|.|+ .|+|.+
T Consensus 203 sv~v~e~PlK~~s~ek~----------------se~~p~~~~LnL~----------------------------~~~ids 238 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKG----------------SEPFPSLSCLNLG----------------------------ANNIDS 238 (418)
T ss_pred heeeecCcccchhhccc----------------CCCCCcchhhhhc----------------------------cccccc
Confidence 99999999998854443 6788888899999 999999
Q ss_pred CcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcccCC
Q 014792 366 LASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSEVNS 418 (418)
Q Consensus 366 ~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~i~~ 418 (418)
|..++++..+|.|..|++.+||+.+.-++..++...|||++++++||||.|++
T Consensus 239 wasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss 291 (418)
T KOG2982|consen 239 WASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISS 291 (418)
T ss_pred HHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccch
Confidence 99999999999999999999999998888899999999999999999999985
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=2e-23 Score=199.22 Aligned_cols=253 Identities=25% Similarity=0.265 Sum_probs=181.1
Q ss_pred HHHhcccccceecccCcCcCCCCC-chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCC
Q 014792 126 DKFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQ 203 (418)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~ 203 (418)
+.++.++.|+.|+|+.|.|+.++. .+... .++++|+|++|.|+++. ...|..+.+|..|.|+.|+++..++ .|..
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~~sfp~~-~ni~~L~La~N~It~l~--~~~F~~lnsL~tlkLsrNrittLp~r~Fk~ 219 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPKPSFPAK-VNIKKLNLASNRITTLE--TGHFDSLNSLLTLKLSRNRITTLPQRSFKR 219 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccCCCCCCC-CCceEEeeccccccccc--cccccccchheeeecccCcccccCHHHhhh
Confidence 566777778888888887777655 44443 67888888888888754 3456667778888888888887766 5666
Q ss_pred CCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCC
Q 014792 204 LKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS 283 (418)
Q Consensus 204 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~ 283 (418)
+++|+.|+|..|.+....... +..+++|+.|.|.+|.+..+... .+..+.++++|+|+.|.+..+.. ..+..++.
T Consensus 220 L~~L~~LdLnrN~irive~lt-FqgL~Sl~nlklqrN~I~kL~DG---~Fy~l~kme~l~L~~N~l~~vn~-g~lfgLt~ 294 (873)
T KOG4194|consen 220 LPKLESLDLNRNRIRIVEGLT-FQGLPSLQNLKLQRNDISKLDDG---AFYGLEKMEHLNLETNRLQAVNE-GWLFGLTS 294 (873)
T ss_pred cchhhhhhccccceeeehhhh-hcCchhhhhhhhhhcCcccccCc---ceeeecccceeecccchhhhhhc-ccccccch
Confidence 888888888888776433333 36778888888888888777655 56777888888888888887654 56778888
Q ss_pred CCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCC--CCCCCCCccchhhhhhhhhhhccCCCCC
Q 014792 284 LEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNS--KKLPTSSHVSFVVYFLIFAFSLHASGNN 361 (418)
Q Consensus 284 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n--~~i~~~~~~~~l~~~~~~l~~l~~~~~n 361 (418)
|++|++|+|.|..+.... ...+++|+.|+|++| +.++... ......|+.|.++ .|
T Consensus 295 L~~L~lS~NaI~rih~d~-----------------WsftqkL~~LdLs~N~i~~l~~~s-----f~~L~~Le~LnLs-~N 351 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHIDS-----------------WSFTQKLKELDLSSNRITRLDEGS-----FRVLSQLEELNLS-HN 351 (873)
T ss_pred hhhhccchhhhheeecch-----------------hhhcccceeEeccccccccCChhH-----HHHHHHhhhhccc-cc
Confidence 888888888888775333 577899999999988 4555442 1223356777777 88
Q ss_pred CcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecC
Q 014792 362 MIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNG 413 (418)
Q Consensus 362 ~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~ 413 (418)
.|..+.. ..+..+.+|++|||++|.+.--.++ .....+.++.|++|.+
T Consensus 352 si~~l~e-~af~~lssL~~LdLr~N~ls~~IED---aa~~f~gl~~LrkL~l 399 (873)
T KOG4194|consen 352 SIDHLAE-GAFVGLSSLHKLDLRSNELSWCIED---AAVAFNGLPSLRKLRL 399 (873)
T ss_pred chHHHHh-hHHHHhhhhhhhcCcCCeEEEEEec---chhhhccchhhhheee
Confidence 8887764 3677889999999999988743211 2233455777777754
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1.5e-21 Score=212.37 Aligned_cols=268 Identities=22% Similarity=0.232 Sum_probs=164.2
Q ss_pred HHHHHhcccccceecccCcCcCC-CCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CC
Q 014792 124 IQDKFSKFEELTSAALPYLGVSS-PGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GL 201 (418)
Q Consensus 124 l~~~~~~l~~L~~L~L~~~~i~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l 201 (418)
++..+..+++|+.|+|++|.+.+ ++..+...+++|++|+|++|.+.+ .+|. +.+++|++|++++|.+.+..+ .+
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~--~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~ 160 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG--SIPR--GSIPNLETLDLSNNMLSGEIPNDI 160 (968)
T ss_pred CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc--ccCc--cccCCCCEEECcCCcccccCChHH
Confidence 45566777777777777777763 333444334777777777777664 3332 346677777777777665444 46
Q ss_pred CCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCC
Q 014792 202 PQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQI 281 (418)
Q Consensus 202 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l 281 (418)
..+++|++|++++|.+.. .++..+..+++|++|++++|.+....+. .++.+++|++|+|++|.+.+..+ ..++.+
T Consensus 161 ~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l 235 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTLASNQLVGQIPR---ELGQMKSLKWIYLGYNNLSGEIP-YEIGGL 235 (968)
T ss_pred hcCCCCCEEECccCcccc-cCChhhhhCcCCCeeeccCCCCcCcCCh---HHcCcCCccEEECcCCccCCcCC-hhHhcC
Confidence 666777777777766654 2444446666777777777766544332 35666677777777776664332 345666
Q ss_pred CCCCEEecCCCCCCcccCCCC--CchhhhhccccccC-----ccccCCCCCcEEEccCC---CCCCCCCccchhhhhhhh
Q 014792 282 RSLEQLYLNKNNLNRIYYPNN--DTIHELVSAHESHE-----ESYLPFQNLCCLLLGNS---KKLPTSSHVSFVVYFLIF 351 (418)
Q Consensus 282 ~~L~~L~l~~n~l~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~l~~L~~L~L~~n---~~i~~~~~~~~l~~~~~~ 351 (418)
++|++|++++|.+++..+... ...++.++++.+.. ..+..+++|+.|++++| +.+|.... -..+
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~------~l~~ 309 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI------QLQN 309 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc------CCCC
Confidence 677777777766654432221 12334444444422 23566788888888877 24443311 1234
Q ss_pred hhhccCCCCCCcC-CCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 352 AFSLHASGNNMIE-DLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 352 l~~l~~~~~n~i~-~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
|+.|+++ +|.+. .+| ..+..+++|+.|++++|.+.... + ..++.+++|+.|+++.
T Consensus 310 L~~L~l~-~n~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~----p--~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 310 LEILHLF-SNNFTGKIP--VALTSLPRLQVLQLWSNKFSGEI----P--KNLGKHNNLTVLDLST 365 (968)
T ss_pred CcEEECC-CCccCCcCC--hhHhcCCCCCEEECcCCCCcCcC----C--hHHhCCCCCcEEECCC
Confidence 6667776 55554 444 46788899999999999887432 2 2367789999998864
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=2.5e-21 Score=210.58 Aligned_cols=268 Identities=22% Similarity=0.235 Sum_probs=174.9
Q ss_pred HHHHH-hcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CC
Q 014792 124 IQDKF-SKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GL 201 (418)
Q Consensus 124 l~~~~-~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l 201 (418)
+|..+ ..+++|++|+|++|.+.+..+. .. +++|++|+|++|.+.+ .+|..++.+++|++|++++|.+.+..| .+
T Consensus 109 ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~-l~~L~~L~Ls~n~~~~--~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 184 (968)
T PLN00113 109 IPDDIFTTSSSLRYLNLSNNNFTGSIPR-GS-IPNLETLDLSNNMLSG--EIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184 (968)
T ss_pred CChHHhccCCCCCEEECcCCccccccCc-cc-cCCCCEEECcCCcccc--cCChHHhcCCCCCEEECccCcccccCChhh
Confidence 44333 3677777777777777654432 12 3777777777777765 456667777777777777777765544 56
Q ss_pred CCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCC
Q 014792 202 PQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQI 281 (418)
Q Consensus 202 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l 281 (418)
..+++|++|++++|.+.. .++..++.+++|++|++++|.+.+..+. .++.+++|++|++++|.+.+..+ ..+..+
T Consensus 185 ~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l 259 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVG-QIPRELGQMKSLKWIYLGYNNLSGEIPY---EIGGLTSLNHLDLVYNNLTGPIP-SSLGNL 259 (968)
T ss_pred hhCcCCCeeeccCCCCcC-cCChHHcCcCCccEEECcCCccCCcCCh---hHhcCCCCCEEECcCceeccccC-hhHhCC
Confidence 677777777777777664 3445556777777777777777654332 46667777777777777665433 456677
Q ss_pred CCCCEEecCCCCCCcccCCCC--CchhhhhccccccC-----ccccCCCCCcEEEccCCC---CCCCCCccchhhhhhhh
Q 014792 282 RSLEQLYLNKNNLNRIYYPNN--DTIHELVSAHESHE-----ESYLPFQNLCCLLLGNSK---KLPTSSHVSFVVYFLIF 351 (418)
Q Consensus 282 ~~L~~L~l~~n~l~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~l~~L~~L~L~~n~---~i~~~~~~~~l~~~~~~ 351 (418)
++|++|++++|.+++..+... ...++.++++.|.. ..+..+++|+.|++++|. .+|.... -..+
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~------~l~~ 333 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT------SLPR 333 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh------cCCC
Confidence 777777777777665433222 23344555555532 235678999999999883 4443311 1234
Q ss_pred hhhccCCCCCCc-CCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 352 AFSLHASGNNMI-EDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 352 l~~l~~~~~n~i-~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
|+.|+++ +|.+ +.+| ..+..+++|+.|++++|.+.... + ..+..+++|+.|+++.
T Consensus 334 L~~L~L~-~n~l~~~~p--~~l~~~~~L~~L~Ls~n~l~~~~----p--~~~~~~~~L~~L~l~~ 389 (968)
T PLN00113 334 LQVLQLW-SNKFSGEIP--KNLGKHNNLTVLDLSTNNLTGEI----P--EGLCSSGNLFKLILFS 389 (968)
T ss_pred CCEEECc-CCCCcCcCC--hHHhCCCCCcEEECCCCeeEeeC----C--hhHhCcCCCCEEECcC
Confidence 6777787 5565 4566 46889999999999999997432 2 2245678899888763
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.85 E-value=5e-23 Score=197.89 Aligned_cols=266 Identities=21% Similarity=0.264 Sum_probs=193.9
Q ss_pred hHHHHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCC
Q 014792 123 KIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLP 202 (418)
Q Consensus 123 ~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~ 202 (418)
.||..+-+++.|+.|+|++|++...+..+... +++-.|+||+|.|..++ ...+-++.-|-+||||.|++..++|.+.
T Consensus 94 GiP~diF~l~dLt~lDLShNqL~EvP~~LE~A-Kn~iVLNLS~N~IetIP--n~lfinLtDLLfLDLS~NrLe~LPPQ~R 170 (1255)
T KOG0444|consen 94 GIPTDIFRLKDLTILDLSHNQLREVPTNLEYA-KNSIVLNLSYNNIETIP--NSLFINLTDLLFLDLSNNRLEMLPPQIR 170 (1255)
T ss_pred CCCchhcccccceeeecchhhhhhcchhhhhh-cCcEEEEcccCccccCC--chHHHhhHhHhhhccccchhhhcCHHHH
Confidence 35666778888888888888888777666655 78888888888887643 2455677788888888888888888888
Q ss_pred CCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCC--ccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCC
Q 014792 203 QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSIS--EITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ 280 (418)
Q Consensus 203 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~ 280 (418)
.+..|++|.|++|.+....+..+ ..+++|+.|++++.+-+ .+|+ .+..+.+|..+||+.|.+..+| ..+.+
T Consensus 171 RL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~TqRTl~N~Pt----sld~l~NL~dvDlS~N~Lp~vP--ecly~ 243 (1255)
T KOG0444|consen 171 RLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSNTQRTLDNIPT----SLDDLHNLRDVDLSENNLPIVP--ECLYK 243 (1255)
T ss_pred HHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhhcccccchhhcCCC----chhhhhhhhhccccccCCCcch--HHHhh
Confidence 88888888888888765555444 56667778888776532 3443 4777888888999998888877 46788
Q ss_pred CCCCCEEecCCCCCCcccCCCC-CchhhhhccccccC----ccccCCCCCcEEEccCC----CCCCCC-Cccchhhhhhh
Q 014792 281 IRSLEQLYLNKNNLNRIYYPNN-DTIHELVSAHESHE----ESYLPFQNLCCLLLGNS----KKLPTS-SHVSFVVYFLI 350 (418)
Q Consensus 281 l~~L~~L~l~~n~l~~~~~~~~-~~~~~~~~~~~~~~----~~~~~l~~L~~L~L~~n----~~i~~~-~~~~~l~~~~~ 350 (418)
+++|+.|+||+|+|+.+..... ...+..+.++.|+. .++..++.|+.|.+.+| .-||+. ..+..+
T Consensus 244 l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L----- 318 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL----- 318 (1255)
T ss_pred hhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh-----
Confidence 8889999999998887743221 23455666676653 44567888888888877 356665 334444
Q ss_pred hhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 351 FAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 351 ~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
++++++ +|.+.-.| +.+..|++|+.|.|+.|.+.+.+ ..|.-++.|++||+-+
T Consensus 319 --evf~aa-nN~LElVP--EglcRC~kL~kL~L~~NrLiTLP-------eaIHlL~~l~vLDlre 371 (1255)
T KOG0444|consen 319 --EVFHAA-NNKLELVP--EGLCRCVKLQKLKLDHNRLITLP-------EAIHLLPDLKVLDLRE 371 (1255)
T ss_pred --HHHHhh-ccccccCc--hhhhhhHHHHHhcccccceeech-------hhhhhcCCcceeeccC
Confidence 444444 88888888 68999999999999999987543 4467789999998743
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=4.9e-22 Score=189.80 Aligned_cols=266 Identities=23% Similarity=0.262 Sum_probs=164.8
Q ss_pred HHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCC
Q 014792 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQL 204 (418)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l 204 (418)
..|.++++|+++++.+|.+..+|. +.....+|+.|+|.+|.|+.+. .+.++.++.|+.||||.|.|+..+. .+..-
T Consensus 96 ~~f~nl~nLq~v~l~~N~Lt~IP~-f~~~sghl~~L~L~~N~I~sv~--se~L~~l~alrslDLSrN~is~i~~~sfp~~ 172 (873)
T KOG4194|consen 96 EFFYNLPNLQEVNLNKNELTRIPR-FGHESGHLEKLDLRHNLISSVT--SEELSALPALRSLDLSRNLISEIPKPSFPAK 172 (873)
T ss_pred HHHhcCCcceeeeeccchhhhccc-ccccccceeEEeeecccccccc--HHHHHhHhhhhhhhhhhchhhcccCCCCCCC
Confidence 456788888888888888887764 3333367888888888888754 5667778888888888888876654 56666
Q ss_pred CCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCC
Q 014792 205 KSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSL 284 (418)
Q Consensus 205 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L 284 (418)
.++++|+|++|.++......+ ..+.+|..|.|++|.++.++.. .++.+++|+.|+|..|.|.-... ..+..+++|
T Consensus 173 ~ni~~L~La~N~It~l~~~~F-~~lnsL~tlkLsrNrittLp~r---~Fk~L~~L~~LdLnrN~irive~-ltFqgL~Sl 247 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHF-DSLNSLLTLKLSRNRITTLPQR---SFKRLPKLESLDLNRNRIRIVEG-LTFQGLPSL 247 (873)
T ss_pred CCceEEeeccccccccccccc-cccchheeeecccCcccccCHH---Hhhhcchhhhhhccccceeeehh-hhhcCchhh
Confidence 788888888888875443333 5667888888888888888765 57778888888888887765433 356777788
Q ss_pred CEEecCCCCCCcccCCCCC--chhhhhcccccc-----CccccCCCCCcEEEccCC--CCC--CCCCccchhhhhhhhhh
Q 014792 285 EQLYLNKNNLNRIYYPNND--TIHELVSAHESH-----EESYLPFQNLCCLLLGNS--KKL--PTSSHVSFVVYFLIFAF 353 (418)
Q Consensus 285 ~~L~l~~n~l~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~l~~L~~L~L~~n--~~i--~~~~~~~~l~~~~~~l~ 353 (418)
+.|.+..|.|..+...... ..++.+++..|. ..++..+..|+.|+||.| +.| .... +...|+
T Consensus 248 ~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws-------ftqkL~ 320 (873)
T KOG4194|consen 248 QNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS-------FTQKLK 320 (873)
T ss_pred hhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh-------hcccce
Confidence 8888888877776433321 122223333321 233445555556666544 111 1111 111234
Q ss_pred hccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCc
Q 014792 354 SLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 414 (418)
Q Consensus 354 ~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 414 (418)
+|++| +|+|+.++. ..+..+..|++|+|++|.++. ....++.-+.+|+.||++
T Consensus 321 ~LdLs-~N~i~~l~~-~sf~~L~~Le~LnLs~Nsi~~------l~e~af~~lssL~~LdLr 373 (873)
T KOG4194|consen 321 ELDLS-SNRITRLDE-GSFRVLSQLEELNLSHNSIDH------LAEGAFVGLSSLHKLDLR 373 (873)
T ss_pred eEecc-ccccccCCh-hHHHHHHHhhhhcccccchHH------HHhhHHHHhhhhhhhcCc
Confidence 44444 555555543 345555555555555555542 112223345666666664
No 8
>PF01302 CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytoskeleton-associated proteins (CAP) are made of three distinct parts, an N-terminal section that is most probably globular and contains the CAP-Gly domain, a large central region predicted to be in an alpha-helical coiled-coil conformation and, finally, a short C-terminal globular domain. The CAP-Gly domain is a conserved, glycine-rich domain of about 42 residues found in some CAPs []. Proteins known to contain this domain include restin (also known as cytoplasmic linker protein-170 or CLIP-170), a 160 kDa protein associated with intermediate filaments and that links endocytic vesicles to microtubules; vertebrate dynactin (150 kDa dynein-associated polypeptide; DAP) and Drosophila glued, a major component of activator I; yeast protein BIK1, which seems to be required for the formation or stabilisation of microtubules during mitosis and for spindle pole body fusion during conjugation; yeast protein NIP100 (NIP80); human protein CKAP1/TFCB; Schizosaccharomyces pombe protein alp11 and Caenorhabditis elegans hypothetical protein F53F4.3. The latter proteins contain a N-terminal ubiquitin domain and a C-terminal CAP-Gly domain. The crystal structure of the CAP-Gly domain of C. elegans F53F4.3 protein, solved by single wavelength sulphur-anomalous phasing, revealed a novel protein fold containing three beta-sheets. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Residues in the groove are highly conserved as measured from the information content of the aligned sequences. The C-terminal tail of another molecule in the crystal is bound in this groove []. ; PDB: 2CP6_A 2E4H_A 2E3H_A 3E2U_B 2HL3_B 3TQ7_Q 2HKQ_B 2HQH_A 2HKN_B 2HL5_C ....
Probab=99.82 E-value=5e-20 Score=131.32 Aligned_cols=67 Identities=42% Similarity=0.794 Sum_probs=58.1
Q ss_pred CCCEEEeCCCCceeeEEEEEeecC-CCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCcccccccccc
Q 014792 11 LGQRVHSANDARRIGTVKYVGEVQ-GYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNL 78 (418)
Q Consensus 11 ~g~rv~~~~~~~~~gtvr~~g~~~-~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l 78 (418)
|||||.+.+...+.|||||+|+++ ..+|.|+|||||++.|+|||+++|++||+|. ++.|.|++++++
T Consensus 1 VG~rV~v~~~~~~~G~vryiG~~~~~~~g~~vGVEld~~~G~~dGt~~G~rYF~c~-~~~G~Fv~~~~v 68 (69)
T PF01302_consen 1 VGDRVRVDDPGGRRGTVRYIGPVPGFKSGIWVGVELDEPRGKNDGTVKGKRYFECP-PNHGIFVRPSKV 68 (69)
T ss_dssp TTSEEEESSTTTEEEEEEEEEE-SSSSSSEEEEEEESSSTSSBSSEETTEESS-SS-TTTEEEEEGGGE
T ss_pred CCCEEEEeeCCCCEEEEEEEeeCCCCCCCEEEEEEEcCCCCCCCcEECCEEEeeeC-CCCEEEecHHHC
Confidence 799999944445889999999999 4568999999998889999999999999997 799999999875
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=1.7e-21 Score=187.48 Aligned_cols=258 Identities=21% Similarity=0.245 Sum_probs=188.9
Q ss_pred EEEEechhhHHHHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCC
Q 014792 115 SIELVGKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLM 194 (418)
Q Consensus 115 ~l~~~g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l 194 (418)
++.-.+...+|+.++.+.+|+.|.+.+|++..+..++.++ +.|+.+++..|.+..- .||..+-.|..|+.||||.|++
T Consensus 38 kLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~L-p~LRsv~~R~N~LKns-GiP~diF~l~dLt~lDLShNqL 115 (1255)
T KOG0444|consen 38 KLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDL-PRLRSVIVRDNNLKNS-GIPTDIFRLKDLTILDLSHNQL 115 (1255)
T ss_pred EechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccc-hhhHHHhhhccccccC-CCCchhcccccceeeecchhhh
Confidence 4556677888888899999999999888888877777776 8888888888887652 4677777888888888888888
Q ss_pred CCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhh
Q 014792 195 SKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSE 274 (418)
Q Consensus 195 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 274 (418)
...+..+..-+++-+|+|++|.+.. .+..++-++..|-.|+|++|.+..+||. +..+..|++|+|++|.+....
T Consensus 116 ~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~NrLe~LPPQ----~RRL~~LqtL~Ls~NPL~hfQ- 189 (1255)
T KOG0444|consen 116 REVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNRLEMLPPQ----IRRLSMLQTLKLSNNPLNHFQ- 189 (1255)
T ss_pred hhcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhccccchhhhcCHH----HHHHhhhhhhhcCCChhhHHH-
Confidence 8777777777888888888888774 3334455777888888888888888775 778888888888888877644
Q ss_pred hhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCC--CCCCCCCccchhhhhhhhh
Q 014792 275 ILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNS--KKLPTSSHVSFVVYFLIFA 352 (418)
Q Consensus 275 l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n--~~i~~~~~~~~l~~~~~~l 352 (418)
+..+..+++|+.|.+++.+-+-.-.|.. +..+.+|..+|+|.| ..+|... +...+|
T Consensus 190 LrQLPsmtsL~vLhms~TqRTl~N~Pts----------------ld~l~NL~dvDlS~N~Lp~vPecl------y~l~~L 247 (1255)
T KOG0444|consen 190 LRQLPSMTSLSVLHMSNTQRTLDNIPTS----------------LDDLHNLRDVDLSENNLPIVPECL------YKLRNL 247 (1255)
T ss_pred HhcCccchhhhhhhcccccchhhcCCCc----------------hhhhhhhhhccccccCCCcchHHH------hhhhhh
Confidence 2556667778888888876444333443 566677777777755 2333331 222334
Q ss_pred hhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeec
Q 014792 353 FSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILN 412 (418)
Q Consensus 353 ~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln 412 (418)
+.|++| +|.|+.+.. ......+|++|+++.|+++..+ .++.++++|+.|-
T Consensus 248 rrLNLS-~N~iteL~~--~~~~W~~lEtLNlSrNQLt~LP-------~avcKL~kL~kLy 297 (1255)
T KOG0444|consen 248 RRLNLS-GNKITELNM--TEGEWENLETLNLSRNQLTVLP-------DAVCKLTKLTKLY 297 (1255)
T ss_pred heeccC-cCceeeeec--cHHHHhhhhhhccccchhccch-------HHHhhhHHHHHHH
Confidence 555555 889988863 5677889999999999998432 4466777777664
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=7.4e-18 Score=173.24 Aligned_cols=236 Identities=20% Similarity=0.241 Sum_probs=139.3
Q ss_pred EEEechhhHHHHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCC
Q 014792 116 IELVGKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMS 195 (418)
Q Consensus 116 l~~~g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~ 195 (418)
+...++..+|+.+. .+|+.|++.+|.++.++. .+++|++|+|++|.++.++ . ..++|+.|++++|.+.
T Consensus 208 Ls~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP---~---lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 208 VGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLP---V---LPPGLLELSIFSNPLT 275 (788)
T ss_pred cCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCccc---C---cccccceeeccCCchh
Confidence 33444556666554 367777777777776553 2477777777777777543 2 1345666666666665
Q ss_pred CccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccC--------------CCCCccE
Q 014792 196 KEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQ--------------GFDNLQL 261 (418)
Q Consensus 196 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--------------~l~~L~~ 261 (418)
..+.. ..+|+.|++++|.++. ++. ..++|+.|++++|+++.++.. +..+. ...+|+.
T Consensus 276 ~Lp~l---p~~L~~L~Ls~N~Lt~--LP~---~p~~L~~LdLS~N~L~~Lp~l-p~~L~~L~Ls~N~L~~LP~lp~~Lq~ 346 (788)
T PRK15387 276 HLPAL---PSGLCKLWIFGNQLTS--LPV---LPPGLQELSVSDNQLASLPAL-PSELCKLWAYNNQLTSLPTLPSGLQE 346 (788)
T ss_pred hhhhc---hhhcCEEECcCCcccc--ccc---cccccceeECCCCccccCCCC-cccccccccccCccccccccccccce
Confidence 44321 2345556666665552 222 234566666666666554321 00000 0135666
Q ss_pred EeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccC-CCCCcEEEccCC--CCCCC
Q 014792 262 LNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLP-FQNLCCLLLGNS--KKLPT 338 (418)
Q Consensus 262 L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~n--~~i~~ 338 (418)
|+|++|+++.++.+ .++|+.|++++|.|+.+ |.....+..++++.|.+..+.. .++|+.|++++| ..+|.
T Consensus 347 LdLS~N~Ls~LP~l-----p~~L~~L~Ls~N~L~~L--P~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP~ 419 (788)
T PRK15387 347 LSVSDNQLASLPTL-----PSELYKLWAYNNRLTSL--PALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM 419 (788)
T ss_pred EecCCCccCCCCCC-----CcccceehhhccccccC--cccccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCCc
Confidence 66666666665431 23556666666666654 3333445556666665444332 346777777777 34443
Q ss_pred CCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCC
Q 014792 339 SSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDP 391 (418)
Q Consensus 339 ~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~ 391 (418)
. ...|+.|+++ +|+++.+| ..+..+++|+.|+|++|++.+.
T Consensus 420 l---------~~~L~~L~Ls-~NqLt~LP--~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 420 L---------PSGLLSLSVY-RNQLTRLP--ESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred c---------hhhhhhhhhc-cCcccccC--hHHhhccCCCeEECCCCCCCch
Confidence 2 2346677887 88899998 4788999999999999999853
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=3.6e-20 Score=170.02 Aligned_cols=225 Identities=22% Similarity=0.268 Sum_probs=128.5
Q ss_pred hHHHHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCC
Q 014792 123 KIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLP 202 (418)
Q Consensus 123 ~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~ 202 (418)
.+.+.+.++..|..+++++|.+...++++.++ ..++.|+.+.|.++ ++|+.+..+++|..|+.+.|.+...+++++
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l-~~l~~l~vs~n~ls---~lp~~i~s~~~l~~l~~s~n~~~el~~~i~ 134 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKLSQLPAAIGEL-EALKSLNVSHNKLS---ELPEQIGSLISLVKLDCSSNELKELPDSIG 134 (565)
T ss_pred hccHhhhcccceeEEEeccchhhhCCHHHHHH-HHHHHhhcccchHh---hccHHHhhhhhhhhhhccccceeecCchHH
Confidence 34455556666666666666666666666665 66666666666655 455666666666666666666666665666
Q ss_pred CCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCC
Q 014792 203 QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIR 282 (418)
Q Consensus 203 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~ 282 (418)
.+..|..++..+|.++ .+|..+..+.+|..+++.+|.+...++. .-.|+.|++||+..|.+..+| +.++.+.
T Consensus 135 ~~~~l~dl~~~~N~i~--slp~~~~~~~~l~~l~~~~n~l~~l~~~----~i~m~~L~~ld~~~N~L~tlP--~~lg~l~ 206 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQIS--SLPEDMVNLSKLSKLDLEGNKLKALPEN----HIAMKRLKHLDCNSNLLETLP--PELGGLE 206 (565)
T ss_pred HHhhhhhhhccccccc--cCchHHHHHHHHHHhhccccchhhCCHH----HHHHHHHHhcccchhhhhcCC--hhhcchh
Confidence 6666666666666555 3444445555566666666666655544 222556666666666665555 3455566
Q ss_pred CCCEEecCCCCCCcccCCCCCch--hhhhccccccC-----ccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhc
Q 014792 283 SLEQLYLNKNNLNRIYYPNNDTI--HELVSAHESHE-----ESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSL 355 (418)
Q Consensus 283 ~L~~L~l~~n~l~~~~~~~~~~~--~~~~~~~~~~~-----~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l 355 (418)
+|+.|++..|+|..+ |++... +.-+..+.|.. +-..++++|..|||.
T Consensus 207 ~L~~LyL~~Nki~~l--Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLR------------------------ 260 (565)
T KOG0472|consen 207 SLELLYLRRNKIRFL--PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLR------------------------ 260 (565)
T ss_pred hhHHHHhhhcccccC--CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecc------------------------
Confidence 666666666666555 432100 00111111100 002345555555555
Q ss_pred cCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCC
Q 014792 356 HASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDP 391 (418)
Q Consensus 356 ~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~ 391 (418)
.|+++..| +.+..+.+|+.||+++|.++.-
T Consensus 261 ----dNklke~P--de~clLrsL~rLDlSNN~is~L 290 (565)
T KOG0472|consen 261 ----DNKLKEVP--DEICLLRSLERLDLSNNDISSL 290 (565)
T ss_pred ----ccccccCc--hHHHHhhhhhhhcccCCccccC
Confidence 77777777 5677777788888888877743
No 12
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.1e-17 Score=137.32 Aligned_cols=76 Identities=45% Similarity=0.823 Sum_probs=67.0
Q ss_pred CCCCCE--EEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccCCCCcchh
Q 014792 9 YKLGQR--VHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPGISLPE 86 (418)
Q Consensus 9 ~~~g~r--v~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~~~s~~~ 86 (418)
.+||+| |++.|..-+.|||||+|+.++.+|.|+||+||+|-|||||+++|++||.|.. +.|+|++|..+..+ +|++
T Consensus 149 i~vG~rCeVtv~G~~~Rrg~vrYvG~~~~k~G~wiGVeydEplGKnDGsv~G~ryF~c~p-~yGgfVrP~~V~Vg-dfpe 226 (234)
T KOG3206|consen 149 IAVGRRCEVTVPGQAPRRGTVRYVGPLEFKPGYWIGVEYDEPLGKNDGSVNGKRYFECAP-KYGGFVRPRAVTVG-DFPE 226 (234)
T ss_pred cccCCeeEEecCCCCCcceEEEEecccCCCCceEEEEecCCccccCCCcccceEeeecCC-ccCCccccceeeec-CCCh
Confidence 789999 5555654467999999999999999999999999999999999999998885 99999999998877 4554
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.69 E-value=1.8e-19 Score=165.56 Aligned_cols=209 Identities=24% Similarity=0.260 Sum_probs=151.0
Q ss_pred hhhHHHHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCC
Q 014792 121 KDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG 200 (418)
Q Consensus 121 ~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~ 200 (418)
..++|+.+..+..+..++++.|.+...++++++. -.+..|+..+|+++. +|+.+..+.+|..|++.+|++...++.
T Consensus 103 ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~-~~l~dl~~~~N~i~s---lp~~~~~~~~l~~l~~~~n~l~~l~~~ 178 (565)
T KOG0472|consen 103 LSELPEQIGSLISLVKLDCSSNELKELPDSIGRL-LDLEDLDATNNQISS---LPEDMVNLSKLSKLDLEGNKLKALPEN 178 (565)
T ss_pred HhhccHHHhhhhhhhhhhccccceeecCchHHHH-hhhhhhhcccccccc---CchHHHHHHHHHHhhccccchhhCCHH
Confidence 3455566666666666666666666666556554 566666666666663 455556666666666666666666665
Q ss_pred CCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCC
Q 014792 201 LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ 280 (418)
Q Consensus 201 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~ 280 (418)
.-.++.|++|+...|.+. .+|.-++.+.+|+.||+.+|++..+| .|..+..|+.|.++.|.|..++. ..+.+
T Consensus 179 ~i~m~~L~~ld~~~N~L~--tlP~~lg~l~~L~~LyL~~Nki~~lP-----ef~gcs~L~Elh~g~N~i~~lpa-e~~~~ 250 (565)
T KOG0472|consen 179 HIAMKRLKHLDCNSNLLE--TLPPELGGLESLELLYLRRNKIRFLP-----EFPGCSLLKELHVGENQIEMLPA-EHLKH 250 (565)
T ss_pred HHHHHHHHhcccchhhhh--cCChhhcchhhhHHHHhhhcccccCC-----CCCccHHHHHHHhcccHHHhhHH-HHhcc
Confidence 445677777777777665 35555567777777777777777766 26677778888888887777665 56678
Q ss_pred CCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCC
Q 014792 281 IRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGN 360 (418)
Q Consensus 281 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~ 360 (418)
++++..||+.+|+++.+ |+. +.-+.+|+.||+| +
T Consensus 251 L~~l~vLDLRdNklke~--Pde----------------~clLrsL~rLDlS----------------------------N 284 (565)
T KOG0472|consen 251 LNSLLVLDLRDNKLKEV--PDE----------------ICLLRSLERLDLS----------------------------N 284 (565)
T ss_pred cccceeeeccccccccC--chH----------------HHHhhhhhhhccc----------------------------C
Confidence 88899999999999888 554 5778899999999 9
Q ss_pred CCcCCCcccccccCCCCCceEEcCCCCCCC
Q 014792 361 NMIEDLASIDSLDSFPKLMDIRLSENPVSD 390 (418)
Q Consensus 361 n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~ 390 (418)
|.|..+|. .++++ +|+.|-+.|||+.+
T Consensus 285 N~is~Lp~--sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 285 NDISSLPY--SLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred CccccCCc--ccccc-eeeehhhcCCchHH
Confidence 99999995 79999 99999999999974
No 14
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.67 E-value=6.3e-16 Score=169.64 Aligned_cols=253 Identities=19% Similarity=0.123 Sum_probs=157.5
Q ss_pred chhhHHHHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC
Q 014792 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT 199 (418)
Q Consensus 120 g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~ 199 (418)
.++.++..+..+++|+.|+|+++......+.+.. +++|++|+|++|.... .+|..+.++++|+.|++++|......|
T Consensus 622 ~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~-l~~Le~L~L~~c~~L~--~lp~si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 622 KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSM-ATNLETLKLSDCSSLV--ELPSSIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred cccccccccccCCCCCEEECCCCCCcCcCCcccc-CCcccEEEecCCCCcc--ccchhhhccCCCCEEeCCCCCCcCccC
Confidence 3456677778899999999988753333335555 4899999999886544 688889999999999999875333444
Q ss_pred CCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCC--------------------------Ccc
Q 014792 200 GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSS--------------------------PIV 253 (418)
Q Consensus 200 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--------------------------~~~ 253 (418)
....+++|+.|++++|.... .++. ..++|++|++++|.+..++.... ...
T Consensus 699 ~~i~l~sL~~L~Lsgc~~L~-~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~ 774 (1153)
T PLN03210 699 TGINLKSLYRLNLSGCSRLK-SFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMT 774 (1153)
T ss_pred CcCCCCCCCEEeCCCCCCcc-cccc---ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhh
Confidence 33378899999999885321 2332 34678889998888877654210 000
Q ss_pred CCCCCccEEeCCCCCCC-ChhhhhhcCCCCCCCEEecCCC-CCCcccCCCCCchhhhhccccccCccccCCCCCcEEEcc
Q 014792 254 QGFDNLQLLNLEDNCIA-EWSEILKLCQIRSLEQLYLNKN-NLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLG 331 (418)
Q Consensus 254 ~~l~~L~~L~L~~n~l~-~~~~l~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 331 (418)
...++|+.|+|++|... .+| ..++++++|+.|++++| .++.+ |.. ..+++|+.|+++
T Consensus 775 ~~~~sL~~L~Ls~n~~l~~lP--~si~~L~~L~~L~Ls~C~~L~~L--P~~-----------------~~L~sL~~L~Ls 833 (1153)
T PLN03210 775 MLSPSLTRLFLSDIPSLVELP--SSIQNLHKLEHLEIENCINLETL--PTG-----------------INLESLESLDLS 833 (1153)
T ss_pred hccccchheeCCCCCCccccC--hhhhCCCCCCEEECCCCCCcCee--CCC-----------------CCccccCEEECC
Confidence 11235666666666432 233 34666777777777765 34444 221 246777777777
Q ss_pred CCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceee
Q 014792 332 NSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKIL 411 (418)
Q Consensus 332 ~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~L 411 (418)
+|..+..... ...+++.|+++ +|.+..+| ..+..+++|+.|++++|+-.... + ..+.++++|+.|
T Consensus 834 ~c~~L~~~p~------~~~nL~~L~Ls-~n~i~~iP--~si~~l~~L~~L~L~~C~~L~~l----~--~~~~~L~~L~~L 898 (1153)
T PLN03210 834 GCSRLRTFPD------ISTNISDLNLS-RTGIEEVP--WWIEKFSNLSFLDMNGCNNLQRV----S--LNISKLKHLETV 898 (1153)
T ss_pred CCCccccccc------cccccCEeECC-CCCCccCh--HHHhcCCCCCEEECCCCCCcCcc----C--cccccccCCCee
Confidence 7743322211 12346667776 67777777 36777888888888875443211 1 123455666666
Q ss_pred cCcc
Q 014792 412 NGSE 415 (418)
Q Consensus 412 n~s~ 415 (418)
+++.
T Consensus 899 ~l~~ 902 (1153)
T PLN03210 899 DFSD 902 (1153)
T ss_pred ecCC
Confidence 5544
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=5.4e-16 Score=159.59 Aligned_cols=236 Identities=17% Similarity=0.196 Sum_probs=163.6
Q ss_pred cccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEE
Q 014792 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILV 211 (418)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~ 211 (418)
..-..|+|++++++.+|+.+. ++|+.|++++|.++.++. ..++|++|++++|+++..+.. .++|+.|+
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~---~~L~~L~L~~N~Lt~LP~------lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA------LPPELRTLEVSGNQLTSLPVL---PPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh---cCCCEEEccCCcCCCCCC------CCCCCcEEEecCCccCcccCc---ccccceee
Confidence 446789999999998887664 689999999999997542 358999999999999976532 46899999
Q ss_pred ecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhh-hc----------CC
Q 014792 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEIL-KL----------CQ 280 (418)
Q Consensus 212 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~-~l----------~~ 280 (418)
+++|.+. .++.. .++|+.|++++|+++.++.. .++|+.|+|++|.+..++.+. .+ ..
T Consensus 269 Ls~N~L~--~Lp~l---p~~L~~L~Ls~N~Lt~LP~~-------p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~ 336 (788)
T PRK15387 269 IFSNPLT--HLPAL---PSGLCKLWIFGNQLTSLPVL-------PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTS 336 (788)
T ss_pred ccCCchh--hhhhc---hhhcCEEECcCCcccccccc-------ccccceeECCCCccccCCCCcccccccccccCcccc
Confidence 9999887 45543 36789999999999987642 368999999999988865321 11 11
Q ss_pred C----CCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCC-CCCcEEEccCC--CCCCCCCccchhhhhhhhhh
Q 014792 281 I----RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPF-QNLCCLLLGNS--KKLPTSSHVSFVVYFLIFAF 353 (418)
Q Consensus 281 l----~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n--~~i~~~~~~~~l~~~~~~l~ 353 (418)
+ .+|+.|++++|+|+.+ |.....+..+.++.|.+..+..+ .+|+.|++++| ..+|.. ...|+
T Consensus 337 LP~lp~~Lq~LdLS~N~Ls~L--P~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l---------~s~L~ 405 (788)
T PRK15387 337 LPTLPSGLQELSVSDNQLASL--PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVL---------PSELK 405 (788)
T ss_pred ccccccccceEecCCCccCCC--CCCCcccceehhhccccccCcccccccceEEecCCcccCCCCc---------ccCCC
Confidence 1 2567777777777765 33334455555555554444322 35777777777 344432 12466
Q ss_pred hccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 354 SLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 354 ~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
.|+++ +|.+..+|.. ..+|+.|++++|.+...+ ..+.++++|+.|+++.
T Consensus 406 ~LdLS-~N~LssIP~l-----~~~L~~L~Ls~NqLt~LP-------~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 406 ELMVS-GNRLTSLPML-----PSGLLSLSVYRNQLTRLP-------ESLIHLSSETTVNLEG 454 (788)
T ss_pred EEEcc-CCcCCCCCcc-----hhhhhhhhhccCcccccC-------hHHhhccCCCeEECCC
Confidence 67777 6777777631 246778888888887432 2366788898888764
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=9.5e-19 Score=143.33 Aligned_cols=159 Identities=23% Similarity=0.307 Sum_probs=146.7
Q ss_pred hcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCcc
Q 014792 129 SKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIR 208 (418)
Q Consensus 129 ~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~ 208 (418)
-++.+++.|.|++|+++.+++.+..+ .+|+.|++++|++. ++|..++.+++|+.|+++-|++...+.+|+.++.|+
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l-~nlevln~~nnqie---~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAEL-KNLEVLNLSNNQIE---ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHh-hhhhhhhcccchhh---hcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence 36778889999999999999999997 99999999999998 578999999999999999999998888999999999
Q ss_pred EEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEe
Q 014792 209 ILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288 (418)
Q Consensus 209 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~ 288 (418)
.|++..|.+....+|..+..+..|+.|+++.|.+.-++++ ++.+++|+.|.+..|.+.+++ ..++.++.|++|.
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d----vg~lt~lqil~lrdndll~lp--keig~lt~lrelh 179 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD----VGKLTNLQILSLRDNDLLSLP--KEIGDLTRLRELH 179 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh----hhhhcceeEEeeccCchhhCc--HHHHHHHHHHHHh
Confidence 9999999998777777777888999999999999998886 899999999999999999887 5789999999999
Q ss_pred cCCCCCCcc
Q 014792 289 LNKNNLNRI 297 (418)
Q Consensus 289 l~~n~l~~~ 297 (418)
+.+|+++-+
T Consensus 180 iqgnrl~vl 188 (264)
T KOG0617|consen 180 IQGNRLTVL 188 (264)
T ss_pred cccceeeec
Confidence 999999888
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=3.7e-18 Score=171.35 Aligned_cols=123 Identities=27% Similarity=0.367 Sum_probs=67.2
Q ss_pred cccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCC---chhh
Q 014792 231 ALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNND---TIHE 307 (418)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~---~~~~ 307 (418)
.|+.|++.+|.+++-... .+-.+..|++|+|++|.+..+|. ..+.++..|++|+||+|+++.+ |... ..++
T Consensus 360 ~Lq~LylanN~Ltd~c~p---~l~~~~hLKVLhLsyNrL~~fpa-s~~~kle~LeeL~LSGNkL~~L--p~tva~~~~L~ 433 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFP---VLVNFKHLKVLHLSYNRLNSFPA-SKLRKLEELEELNLSGNKLTTL--PDTVANLGRLH 433 (1081)
T ss_pred HHHHHHHhcCcccccchh---hhccccceeeeeecccccccCCH-HHHhchHHhHHHhcccchhhhh--hHHHHhhhhhH
Confidence 455555555555543211 34455555555555555555554 4455555555555555555555 2221 1122
Q ss_pred hhccccccCc---cccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcC
Q 014792 308 LVSAHESHEE---SYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLS 384 (418)
Q Consensus 308 ~~~~~~~~~~---~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~ 384 (418)
.+.+..|... .+..++.|+.+|++ +|.+..+..-....+ |+|++||++
T Consensus 434 tL~ahsN~l~~fPe~~~l~qL~~lDlS----------------------------~N~L~~~~l~~~~p~-p~LkyLdlS 484 (1081)
T KOG0618|consen 434 TLRAHSNQLLSFPELAQLPQLKVLDLS----------------------------CNNLSEVTLPEALPS-PNLKYLDLS 484 (1081)
T ss_pred HHhhcCCceeechhhhhcCcceEEecc----------------------------cchhhhhhhhhhCCC-cccceeecc
Confidence 2233333211 24667888888888 888866643223333 899999999
Q ss_pred CCCC
Q 014792 385 ENPV 388 (418)
Q Consensus 385 ~N~l 388 (418)
+|.-
T Consensus 485 GN~~ 488 (1081)
T KOG0618|consen 485 GNTR 488 (1081)
T ss_pred CCcc
Confidence 9984
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.65 E-value=1.3e-16 Score=151.83 Aligned_cols=269 Identities=23% Similarity=0.179 Sum_probs=121.8
Q ss_pred HhcccccceecccCcCcCCCCC----chhhhcCCccEEEcCCCCCCC----hHHHHHHhhcCCCCCEEEcCCCCCCCccC
Q 014792 128 FSKFEELTSAALPYLGVSSPGA----NIGTIVTNLKELDLTGNLLSD----WKDIGAFGEQLPALAVLNLSNNLMSKEVT 199 (418)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~----~~~~~~~~L~~L~Ls~n~l~~----~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~ 199 (418)
+..+..|+.++++++.++.... ......+++++|+++++.+.. +..++..+..+++|+.|++++|.+....+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 3444445555555555533211 111122445555555555441 22344445555555555555555543211
Q ss_pred -CCCCC---CCccEEEecCCCCCHHHHHH---HHhcC-CcccEEEccCCCCCccCC-CCCCccCCCCCccEEeCCCCCCC
Q 014792 200 -GLPQL---KSIRILVLNCTGVNWMQVEI---LKHSL-PALEELHLMGNSISEITP-VSSPIVQGFDNLQLLNLEDNCIA 270 (418)
Q Consensus 200 -~l~~l---~~L~~L~L~~n~l~~~~~~~---~~~~l-~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~L~~L~L~~n~l~ 270 (418)
.+..+ ++|++|++++|.+....... .+..+ ++|++|++++|.++.... .....+..+.+|++|++++|.+.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 12222 23555555555554322221 22333 555555555555542110 00112333445555555555554
Q ss_pred Chh--hh-hhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhh-
Q 014792 271 EWS--EI-LKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVV- 346 (418)
Q Consensus 271 ~~~--~l-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~- 346 (418)
+.. .+ ..+..+++|+.|++++|.+++...... ...+..+++|+.|++++|. +... ....+.
T Consensus 179 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l-------------~~~~~~~~~L~~L~ls~n~-l~~~-~~~~l~~ 243 (319)
T cd00116 179 DAGIRALAEGLKANCNLEVLDLNNNGLTDEGASAL-------------AETLASLKSLEVLNLGDNN-LTDA-GAAALAS 243 (319)
T ss_pred hHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHH-------------HHHhcccCCCCEEecCCCc-CchH-HHHHHHH
Confidence 311 11 123334455555555555543321110 0012344555555555442 1000 000000
Q ss_pred h---hhhhhhhccCCCCCCcCCCcc---cccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhh-CCceeecCc
Q 014792 347 Y---FLIFAFSLHASGNNMIEDLAS---IDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARL-GKIKILNGS 414 (418)
Q Consensus 347 ~---~~~~l~~l~~~~~n~i~~~~~---~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l-~~L~~Ln~s 414 (418)
. ....|++|+++ +|.+++... ...+..+++|+.|++++|.+.+.. ......++... +.|+.|+..
T Consensus 244 ~~~~~~~~L~~L~l~-~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~--~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 244 ALLSPNISLLTLSLS-CNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG--AQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred HHhccCCCceEEEcc-CCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH--HHHHHHHHhhcCCchhhcccC
Confidence 0 11244555554 777753221 235567789999999999998542 22333334445 678887764
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.65 E-value=1.1e-16 Score=136.19 Aligned_cols=135 Identities=34% Similarity=0.487 Sum_probs=67.4
Q ss_pred cCCcccEEEccCCCCCccCCCCCCccC-CCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchh
Q 014792 228 SLPALEELHLMGNSISEITPVSSPIVQ-GFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIH 306 (418)
Q Consensus 228 ~l~~L~~L~L~~n~l~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 306 (418)
+...+++|+|.+|.|+.+.. ++ .+.+|+.|+|++|.|+.+.. +..++.|++|++++|.|+.+. ...
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~-----L~~~l~~L~~L~Ls~N~I~~l~~---l~~L~~L~~L~L~~N~I~~i~--~~l--- 83 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN-----LGATLDKLEVLDLSNNQITKLEG---LPGLPRLKTLDLSNNRISSIS--EGL--- 83 (175)
T ss_dssp -------------------S-------TT-TT--EEE-TTS--S--TT-------TT--EEE--SS---S-C--HHH---
T ss_pred cccccccccccccccccccc-----hhhhhcCCCEEECCCCCCccccC---ccChhhhhhcccCCCCCCccc--cch---
Confidence 44578999999999988753 44 57899999999999998654 777899999999999999882 110
Q ss_pred hhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCC
Q 014792 307 ELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSEN 386 (418)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N 386 (418)
...+++|+.|+++ +|+|.++..+..++.+|+|+.|+|.+|
T Consensus 84 ------------~~~lp~L~~L~L~----------------------------~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 84 ------------DKNLPNLQELYLS----------------------------NNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp ------------HHH-TT--EEE-T----------------------------TS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred ------------HHhCCcCCEEECc----------------------------CCcCCChHHhHHHHcCCCcceeeccCC
Confidence 2358999999999 999999988889999999999999999
Q ss_pred CCCCCCCcchhHHHHHHhhCCceeecCcccCC
Q 014792 387 PVSDPGRGGISRFAIIARLGKIKILNGSEVNS 418 (418)
Q Consensus 387 ~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~i~~ 418 (418)
|+.... ..+..++..+|+|++||+..|++
T Consensus 124 Pv~~~~---~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 124 PVCEKK---NYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp GGGGST---THHHHHHHH-TT-SEETTEETTS
T ss_pred cccchh---hHHHHHHHHcChhheeCCEEccH
Confidence 998654 78899999999999999999874
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.64 E-value=4e-16 Score=148.40 Aligned_cols=224 Identities=21% Similarity=0.224 Sum_probs=100.1
Q ss_pred hHHHHHhcccccceecccCcCcCCCCC-chhhhc--CCccEEEcCCCCCCC--hHHHHHHhhcC-CCCCEEEcCCCCCCC
Q 014792 123 KIQDKFSKFEELTSAALPYLGVSSPGA-NIGTIV--TNLKELDLTGNLLSD--WKDIGAFGEQL-PALAVLNLSNNLMSK 196 (418)
Q Consensus 123 ~l~~~~~~l~~L~~L~L~~~~i~~~~~-~~~~~~--~~L~~L~Ls~n~l~~--~~~l~~~~~~l-~~L~~L~Ls~n~l~~ 196 (418)
.++..+..+++|+.|++++|.+....+ .+.... ++|++|++++|.+.+ ...+...+..+ ++|+.|++++|.+++
T Consensus 72 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 151 (319)
T cd00116 72 SLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG 151 (319)
T ss_pred HHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCc
Confidence 344444455555555555555443222 111110 125555555555442 11222333444 555555555555542
Q ss_pred cc-----CCCCCCCCccEEEecCCCCCHHHHHHH---HhcCCcccEEEccCCCCCccCC-CCCCccCCCCCccEEeCCCC
Q 014792 197 EV-----TGLPQLKSIRILVLNCTGVNWMQVEIL---KHSLPALEELHLMGNSISEITP-VSSPIVQGFDNLQLLNLEDN 267 (418)
Q Consensus 197 ~~-----~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~L~~L~L~~n 267 (418)
.. ..+..+.+|++|++++|.+++..++.+ +..+++|++|++++|.+.+... .+...+..+++|++|++++|
T Consensus 152 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 152 ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 11 113334455555555555543322222 2223355555555555432210 00112333445555555555
Q ss_pred CCCChhhhhhcC-----CCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCcc
Q 014792 268 CIAEWSEILKLC-----QIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHV 342 (418)
Q Consensus 268 ~l~~~~~l~~l~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~ 342 (418)
.+.+... ..+. ..+.|++|++++|.+++...... ...+..+++|+.++++
T Consensus 232 ~l~~~~~-~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l-------------~~~~~~~~~L~~l~l~----------- 286 (319)
T cd00116 232 NLTDAGA-AALASALLSPNISLLTLSLSCNDITDDGAKDL-------------AEVLAEKESLLELDLR----------- 286 (319)
T ss_pred cCchHHH-HHHHHHHhccCCCceEEEccCCCCCcHHHHHH-------------HHHHhcCCCccEEECC-----------
Confidence 5544221 1111 12455555555555542211000 0012333555555555
Q ss_pred chhhhhhhhhhhccCCCCCCcCCCccc---ccccCC-CCCceEEcCCCCC
Q 014792 343 SFVVYFLIFAFSLHASGNNMIEDLASI---DSLDSF-PKLMDIRLSENPV 388 (418)
Q Consensus 343 ~~l~~~~~~l~~l~~~~~n~i~~~~~~---~~l~~~-~~L~~L~l~~N~l 388 (418)
+|.+.+.+.. ..+... +.|++|++.+||+
T Consensus 287 -----------------~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 287 -----------------GNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred -----------------CCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 8888766321 234455 7999999999985
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.63 E-value=7e-16 Score=159.54 Aligned_cols=238 Identities=20% Similarity=0.202 Sum_probs=143.3
Q ss_pred EEechhhHHHHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCC
Q 014792 117 ELVGKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSK 196 (418)
Q Consensus 117 ~~~g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~ 196 (418)
...++..+|..+. +.|+.|+|++|.++.++..+. ++|++|++++|.++. +|..+ .++|+.|+|++|++..
T Consensus 186 ~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~Lts---LP~~l--~~~L~~L~Ls~N~L~~ 255 (754)
T PRK15370 186 KILGLTTIPACIP--EQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTS---IPATL--PDTIQEMELSINRITE 255 (754)
T ss_pred CCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc---cCCCEEECCCCcccc---CChhh--hccccEEECcCCccCc
Confidence 3334445554442 467777788777777655332 577777777777774 33332 2367777777777765
Q ss_pred ccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhh
Q 014792 197 EVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEIL 276 (418)
Q Consensus 197 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~ 276 (418)
.+..+. .+|+.|++++|.+. .++..+ .++|+.|++++|.++.++.. + .++|+.|++++|.+..++.
T Consensus 256 LP~~l~--s~L~~L~Ls~N~L~--~LP~~l--~~sL~~L~Ls~N~Lt~LP~~----l--p~sL~~L~Ls~N~Lt~LP~-- 321 (754)
T PRK15370 256 LPERLP--SALQSLDLFHNKIS--CLPENL--PEELRYLSVYDNSIRTLPAH----L--PSGITHLNVQSNSLTALPE-- 321 (754)
T ss_pred CChhHh--CCCCEEECcCCccC--cccccc--CCCCcEEECCCCccccCccc----c--hhhHHHHHhcCCccccCCc--
Confidence 443432 46777777777766 233322 24677777777777765532 1 1356666666666665442
Q ss_pred hcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCcccc--CCCCCcEEEccCC--CCCCCCCccchhhhhhhhh
Q 014792 277 KLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYL--PFQNLCCLLLGNS--KKLPTSSHVSFVVYFLIFA 352 (418)
Q Consensus 277 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~L~~L~L~~n--~~i~~~~~~~~l~~~~~~l 352 (418)
.+ .++|+.|++++|.++.+. ......+..++++.|.+..+. -.++|+.|+|++| ..+|.. +...|
T Consensus 322 ~l--~~sL~~L~Ls~N~Lt~LP-~~l~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~--------l~~sL 390 (754)
T PRK15370 322 TL--PPGLKTLEAGENALTSLP-ASLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPEN--------LPAAL 390 (754)
T ss_pred cc--cccceeccccCCccccCC-hhhcCcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCCHh--------HHHHH
Confidence 11 245666666666666542 122234555555555443221 1368999999988 345432 12357
Q ss_pred hhccCCCCCCcCCCcc-cc-cccCCCCCceEEcCCCCCCC
Q 014792 353 FSLHASGNNMIEDLAS-ID-SLDSFPKLMDIRLSENPVSD 390 (418)
Q Consensus 353 ~~l~~~~~n~i~~~~~-~~-~l~~~~~L~~L~l~~N~l~~ 390 (418)
+.|+++ +|.+..+|. +. ....++.+..|++.+||+..
T Consensus 391 ~~LdLs-~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 391 QIMQAS-RNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHhhc-cCCcccCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 778888 788888873 11 23446889999999999973
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.63 E-value=1.3e-17 Score=167.58 Aligned_cols=220 Identities=21% Similarity=0.246 Sum_probs=154.9
Q ss_pred CCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEE
Q 014792 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEEL 235 (418)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 235 (418)
.+|++++++.|.++ .+|++++.+.+|+.|+.+.|++...+..+....+|+.|.+..|.+. .++.....+..|++|
T Consensus 241 ~nl~~~dis~n~l~---~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~--yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS---NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE--YIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccceeeecchhhhh---cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh--hCCCcccccceeeee
Confidence 56788888888777 4677888888888888888887665555555666666666666555 344444556666666
Q ss_pred EccCCCCCccCCCCC----------------------CccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCC
Q 014792 236 HLMGNSISEITPVSS----------------------PIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNN 293 (418)
Q Consensus 236 ~L~~n~l~~~~~~~~----------------------~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~ 293 (418)
+|..|.+..++.... ..-..++.|+.|.|.+|.+++-- ++.+..+++|+.|+|++|+
T Consensus 316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c-~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC-FPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc-hhhhccccceeeeeecccc
Confidence 666666655443200 01123467888899999888743 2568889999999999999
Q ss_pred CCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCC--CCCCCC-CccchhhhhhhhhhhccCCCCCCcCCCcccc
Q 014792 294 LNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNS--KKLPTS-SHVSFVVYFLIFAFSLHASGNNMIEDLASID 370 (418)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n--~~i~~~-~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~ 370 (418)
|..+ |+. .+..+..|+.|+||+| +.+|.. ..+..+..+..+ .|++...|
T Consensus 395 L~~f--pas---------------~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ah--------sN~l~~fP--- 446 (1081)
T KOG0618|consen 395 LNSF--PAS---------------KLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAH--------SNQLLSFP--- 446 (1081)
T ss_pred cccC--CHH---------------HHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhc--------CCceeech---
Confidence 9988 432 1688999999999999 677755 344566555554 89998887
Q ss_pred cccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 371 SLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 371 ~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
.+..++.|+.+|++.|.++... ..... .-|+|++||+|.
T Consensus 447 e~~~l~qL~~lDlS~N~L~~~~-----l~~~~-p~p~LkyLdlSG 485 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLSCNNLSEVT-----LPEAL-PSPNLKYLDLSG 485 (1081)
T ss_pred hhhhcCcceEEecccchhhhhh-----hhhhC-CCcccceeeccC
Confidence 6889999999999999998432 11111 127999999885
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.62 E-value=9.9e-15 Score=160.30 Aligned_cols=248 Identities=17% Similarity=0.158 Sum_probs=158.2
Q ss_pred cceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEEec
Q 014792 134 LTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLN 213 (418)
Q Consensus 134 L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~ 213 (418)
|+.|.+.++.+...+..+ . +.+|++|+|++|.+. .++..+..+++|+.|+|+++.....+|.++.+++|++|+++
T Consensus 591 Lr~L~~~~~~l~~lP~~f-~-~~~L~~L~L~~s~l~---~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNF-R-PENLVKLQMQGSKLE---KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLS 665 (1153)
T ss_pred cEEEEecCCCCCCCCCcC-C-ccCCcEEECcCcccc---ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEec
Confidence 555555555555555443 2 378888888888877 45667788999999999887654556678888999999999
Q ss_pred CCCCCHHHHHHHHhcCCcccEEEccCCC-CCccCCCCCCccCCCCCccEEeCCCCCCC-ChhhhhhcCCCCCCCEEecCC
Q 014792 214 CTGVNWMQVEILKHSLPALEELHLMGNS-ISEITPVSSPIVQGFDNLQLLNLEDNCIA-EWSEILKLCQIRSLEQLYLNK 291 (418)
Q Consensus 214 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~l~~l~~l~~L~~L~l~~ 291 (418)
+|.... .++..++.+++|+.|++++|. +..++.. + .+++|+.|++++|... .++. ..++|+.|++++
T Consensus 666 ~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~~Lp~~----i-~l~sL~~L~Lsgc~~L~~~p~-----~~~nL~~L~L~~ 734 (1153)
T PLN03210 666 DCSSLV-ELPSSIQYLNKLEDLDMSRCENLEILPTG----I-NLKSLYRLNLSGCSRLKSFPD-----ISTNISWLDLDE 734 (1153)
T ss_pred CCCCcc-ccchhhhccCCCCEEeCCCCCCcCccCCc----C-CCCCCCEEeCCCCCCcccccc-----ccCCcCeeecCC
Confidence 875432 566677889999999999864 5555543 2 5778888888887432 2221 135677788888
Q ss_pred CCCCcccCCCCCc-------------------------------hhhhhccccc-----cCccccCCCCCcEEEccCCC-
Q 014792 292 NNLNRIYYPNNDT-------------------------------IHELVSAHES-----HEESYLPFQNLCCLLLGNSK- 334 (418)
Q Consensus 292 n~l~~~~~~~~~~-------------------------------~~~~~~~~~~-----~~~~~~~l~~L~~L~L~~n~- 334 (418)
|.++.+....... .++.++++++ -+..+..+++|+.|++++|.
T Consensus 735 n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 735 TAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN 814 (1153)
T ss_pred CccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC
Confidence 7776652111111 1222333332 12334556666666666652
Q ss_pred --CCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeec
Q 014792 335 --KLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILN 412 (418)
Q Consensus 335 --~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln 412 (418)
.+|.... ..+|+.|++++++.+..+|. ..++|++|+|++|.+... + ..+..+++|+.|+
T Consensus 815 L~~LP~~~~-------L~sL~~L~Ls~c~~L~~~p~-----~~~nL~~L~Ls~n~i~~i-----P--~si~~l~~L~~L~ 875 (1153)
T PLN03210 815 LETLPTGIN-------LESLESLDLSGCSRLRTFPD-----ISTNISDLNLSRTGIEEV-----P--WWIEKFSNLSFLD 875 (1153)
T ss_pred cCeeCCCCC-------ccccCEEECCCCCccccccc-----cccccCEeECCCCCCccC-----h--HHHhcCCCCCEEE
Confidence 3333221 23456677776666665552 135788888888877642 2 2477899999998
Q ss_pred Cccc
Q 014792 413 GSEV 416 (418)
Q Consensus 413 ~s~i 416 (418)
++..
T Consensus 876 L~~C 879 (1153)
T PLN03210 876 MNGC 879 (1153)
T ss_pred CCCC
Confidence 8763
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.61 E-value=5.1e-17 Score=149.23 Aligned_cols=240 Identities=22% Similarity=0.213 Sum_probs=160.6
Q ss_pred EEechhhHHHHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCC-CCCC
Q 014792 117 ELVGKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSN-NLMS 195 (418)
Q Consensus 117 ~~~g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~-n~l~ 195 (418)
...|..++|..+. +.-.++.|..|+|+.+++..++-+++|++|||++|.|+.+. |..|..+++|..|-+.+ |+|+
T Consensus 54 r~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~--p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 54 RGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA--PDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred cCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcC--hHhhhhhHhhhHHHhhcCCchh
Confidence 3345556654432 24567788888888888855555588888888888888754 77888888776666655 7888
Q ss_pred CccC-CCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCC----
Q 014792 196 KEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIA---- 270 (418)
Q Consensus 196 ~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~---- 270 (418)
..+. .|.++..|+-|.++-|.+.. .....+..+++|..|.+..|.+..+... .+..+..++.+.+..|.+.
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~C-ir~~al~dL~~l~lLslyDn~~q~i~~~---tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINC-IRQDALRDLPSLSLLSLYDNKIQSICKG---TFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcc-hhHHHHHHhhhcchhcccchhhhhhccc---cccchhccchHhhhcCccccccc
Confidence 7766 47788888888888777765 3555557778888888877777766543 3445555555555555411
Q ss_pred ---------------------------------------------------------ChhhhhhcCCCCCCCEEecCCCC
Q 014792 271 ---------------------------------------------------------EWSEILKLCQIRSLEQLYLNKNN 293 (418)
Q Consensus 271 ---------------------------------------------------------~~~~l~~l~~l~~L~~L~l~~n~ 293 (418)
..-+...+..+++|++|+|++|+
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 00011235677888888888888
Q ss_pred CCcccCCCCC--chhhhhccccccC-----ccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCC
Q 014792 294 LNRIYYPNND--TIHELVSAHESHE-----ESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDL 366 (418)
Q Consensus 294 l~~~~~~~~~--~~~~~~~~~~~~~-----~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~ 366 (418)
|+.+...... ..++.+.+..|.+ ..|..+..|++|+|. +|+|+.+
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~----------------------------~N~it~~ 337 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLY----------------------------DNQITTV 337 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeec----------------------------CCeeEEE
Confidence 8887543322 2233344444432 224456667777777 9999877
Q ss_pred cccccccCCCCCceEEcCCCCCCCCCC
Q 014792 367 ASIDSLDSFPKLMDIRLSENPVSDPGR 393 (418)
Q Consensus 367 ~~~~~l~~~~~L~~L~l~~N~l~~~~~ 393 (418)
.. -++..+..|.+|+|-.||+..++.
T Consensus 338 ~~-~aF~~~~~l~~l~l~~Np~~CnC~ 363 (498)
T KOG4237|consen 338 AP-GAFQTLFSLSTLNLLSNPFNCNCR 363 (498)
T ss_pred ec-ccccccceeeeeehccCcccCccc
Confidence 65 378889999999999999998773
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.60 E-value=4e-15 Score=153.93 Aligned_cols=242 Identities=20% Similarity=0.166 Sum_probs=169.6
Q ss_pred cccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEE
Q 014792 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILV 211 (418)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~ 211 (418)
.+.+.|++++++++.++..+ .++|+.|+|++|.++. +|..+ .++|++|++++|+++..+..+. .+|+.|+
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I---p~~L~~L~Ls~N~Lts---LP~~l--~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI---PEQITTLILDNNELKS---LPENL--QGNIKTLYANSNQLTSIPATLP--DTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcCcCCccc---ccCCcEEEecCCCCCc---CChhh--ccCCCEEECCCCccccCChhhh--ccccEEE
Confidence 45788999999999887655 3789999999999996 45444 3689999999999987655443 4799999
Q ss_pred ecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCC
Q 014792 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNK 291 (418)
Q Consensus 212 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~ 291 (418)
+++|.+. .+|..+ ..+|+.|++++|.++.++.. + ..+|+.|++++|.++.++. .+ .++|+.|++++
T Consensus 248 Ls~N~L~--~LP~~l--~s~L~~L~Ls~N~L~~LP~~----l--~~sL~~L~Ls~N~Lt~LP~--~l--p~sL~~L~Ls~ 313 (754)
T PRK15370 248 LSINRIT--ELPERL--PSALQSLDLFHNKISCLPEN----L--PEELRYLSVYDNSIRTLPA--HL--PSGITHLNVQS 313 (754)
T ss_pred CcCCccC--cCChhH--hCCCCEEECcCCccCccccc----c--CCCCcEEECCCCccccCcc--cc--hhhHHHHHhcC
Confidence 9999987 345443 25899999999999987654 2 2589999999999998763 22 24799999999
Q ss_pred CCCCcccCCCCCchhhhhccccccCccccC--CCCCcEEEccCC--CCCCCCCccchhhhhhhhhhhccCCCCCCcCCCc
Q 014792 292 NNLNRIYYPNNDTIHELVSAHESHEESYLP--FQNLCCLLLGNS--KKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLA 367 (418)
Q Consensus 292 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~L~~L~L~~n--~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~ 367 (418)
|.++.+. ......++.+.++.|.+..+.. .++|+.|++++| ..+|... ...|+.|+++ +|.+..+|
T Consensus 314 N~Lt~LP-~~l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~l--------p~~L~~LdLs-~N~Lt~LP 383 (754)
T PRK15370 314 NSLTALP-ETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETL--------PPTITTLDVS-RNALTNLP 383 (754)
T ss_pred CccccCC-ccccccceeccccCCccccCChhhcCcccEEECCCCCCCcCChhh--------cCCcCEEECC-CCcCCCCC
Confidence 9999873 2233456666777765544331 357888888877 3344321 1356777777 67777776
Q ss_pred ccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCc
Q 014792 368 SIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 414 (418)
Q Consensus 368 ~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 414 (418)
. .+. +.|+.|++++|.+...+ . ......+.++++..|++.
T Consensus 384 ~--~l~--~sL~~LdLs~N~L~~LP-~--sl~~~~~~~~~l~~L~L~ 423 (754)
T PRK15370 384 E--NLP--AALQIMQASRNNLVRLP-E--SLPHFRGEGPQPTRIIVE 423 (754)
T ss_pred H--hHH--HHHHHHhhccCCcccCc-h--hHHHHhhcCCCccEEEee
Confidence 3 332 36888888888887433 1 111223445666666553
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.52 E-value=1.5e-16 Score=130.47 Aligned_cols=184 Identities=27% Similarity=0.314 Sum_probs=149.0
Q ss_pred chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcC
Q 014792 150 NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSL 229 (418)
Q Consensus 150 ~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l 229 (418)
.++.+ .+++.|-||+|.++. +|.-+..+.+|+.|++++|++...+.+++.+++|+.|+++-|++. .+|..++.+
T Consensus 28 gLf~~-s~ITrLtLSHNKl~~---vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~--~lprgfgs~ 101 (264)
T KOG0617|consen 28 GLFNM-SNITRLTLSHNKLTV---VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN--ILPRGFGSF 101 (264)
T ss_pred cccch-hhhhhhhcccCceee---cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhh--cCccccCCC
Confidence 44454 889999999999984 677788999999999999999999889999999999999999887 578888999
Q ss_pred CcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhh
Q 014792 230 PALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELV 309 (418)
Q Consensus 230 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 309 (418)
|.|+.|++..|.+..-.. +..+..+..|+.|.|+.|.+.-++ ..++++++|+.|.+.+|.+-.+ |..
T Consensus 102 p~levldltynnl~e~~l--pgnff~m~tlralyl~dndfe~lp--~dvg~lt~lqil~lrdndll~l--pke------- 168 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSL--PGNFFYMTTLRALYLGDNDFEILP--PDVGKLTNLQILSLRDNDLLSL--PKE------- 168 (264)
T ss_pred chhhhhhccccccccccC--CcchhHHHHHHHHHhcCCCcccCC--hhhhhhcceeEEeeccCchhhC--cHH-------
Confidence 999999999999875321 124677889999999999998877 4789999999999999998777 554
Q ss_pred ccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCC---CCCceEEcCCC
Q 014792 310 SAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSF---PKLMDIRLSEN 386 (418)
Q Consensus 310 ~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~---~~L~~L~l~~N 386 (418)
++.+..|++|++. +|.++-+|. .+..+ .+=+...+..|
T Consensus 169 ---------ig~lt~lrelhiq----------------------------gnrl~vlpp--el~~l~l~~~k~v~r~E~N 209 (264)
T KOG0617|consen 169 ---------IGDLTRLRELHIQ----------------------------GNRLTVLPP--ELANLDLVGNKQVMRMEEN 209 (264)
T ss_pred ---------HHHHHHHHHHhcc----------------------------cceeeecCh--hhhhhhhhhhHHHHhhhhC
Confidence 6778889999999 888888873 34332 23455666777
Q ss_pred CCCCC
Q 014792 387 PVSDP 391 (418)
Q Consensus 387 ~l~~~ 391 (418)
|....
T Consensus 210 Pwv~p 214 (264)
T KOG0617|consen 210 PWVNP 214 (264)
T ss_pred CCCCh
Confidence 77643
No 27
>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]
Probab=99.47 E-value=5.6e-14 Score=130.63 Aligned_cols=68 Identities=37% Similarity=0.763 Sum_probs=61.8
Q ss_pred CCCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccc
Q 014792 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHN 77 (418)
Q Consensus 6 ~~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~ 77 (418)
|..+.|||||.+.| ..|||||+|.+....|.|+|||-|+|.||+||+++|+|||+|.. ..|-|+||..
T Consensus 1 Ms~lSv~D~Vll~~---~~g~VrfiG~t~f~~GiW~GlELd~p~GkNDGSvnGvRYF~Ckk-~~giFir~~~ 68 (669)
T COG5244 1 MSLLSVNDRVLLGD---KFGTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKK-RHGIFIRPDD 68 (669)
T ss_pred CceeecCCEEEecc---ccceEEEeeecccccceEEEEEecCCCCCCCCccCceEEEEecC-CcceEEecCc
Confidence 34578999999966 57999999999999999999999999999999999999999997 7899999763
No 28
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.42 E-value=2.6e-14 Score=127.29 Aligned_cols=188 Identities=23% Similarity=0.326 Sum_probs=131.8
Q ss_pred CCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCcc------------------------CCCCCCCCccEEE
Q 014792 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEV------------------------TGLPQLKSIRILV 211 (418)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~------------------------~~l~~l~~L~~L~ 211 (418)
.+|+.+.++.+.-.. +-.+...-|.|+++.+.+.-++..+ ..+..+..|++++
T Consensus 214 ~~l~~~~~s~~~~~~---i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelD 290 (490)
T KOG1259|consen 214 RNLKTLKFSALSTEN---IVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELD 290 (490)
T ss_pred hhhheeeeeccchhh---eeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhcc
Confidence 677777777665332 2233334566777776654443211 0122456678888
Q ss_pred ecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCC
Q 014792 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNK 291 (418)
Q Consensus 212 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~ 291 (418)
|++|.++ .+...+.-.|.++.|+++.|.+..+.. +..+++|+.|||++|.++..... -.++-+.++|.|++
T Consensus 291 LS~N~I~--~iDESvKL~Pkir~L~lS~N~i~~v~n-----La~L~~L~~LDLS~N~Ls~~~Gw--h~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 291 LSGNLIT--QIDESVKLAPKLRRLILSQNRIRTVQN-----LAELPQLQLLDLSGNLLAECVGW--HLKLGNIKTLKLAQ 361 (490)
T ss_pred ccccchh--hhhhhhhhccceeEEeccccceeeehh-----hhhcccceEeecccchhHhhhhh--HhhhcCEeeeehhh
Confidence 8888877 455666777888888888888877652 56778888888888877765432 23456778888888
Q ss_pred CCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCccccc
Q 014792 292 NNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDS 371 (418)
Q Consensus 292 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~ 371 (418)
|.|.++ +++..+-+|..||++ +|+|..+..+..
T Consensus 362 N~iE~L-------------------SGL~KLYSLvnLDl~----------------------------~N~Ie~ldeV~~ 394 (490)
T KOG1259|consen 362 NKIETL-------------------SGLRKLYSLVNLDLS----------------------------SNQIEELDEVNH 394 (490)
T ss_pred hhHhhh-------------------hhhHhhhhheecccc----------------------------ccchhhHHHhcc
Confidence 887776 225677788888988 999999988889
Q ss_pred ccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhh
Q 014792 372 LDSFPKLMDIRLSENPVSDPGRGGISRFAIIARL 405 (418)
Q Consensus 372 l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l 405 (418)
++++|.|++|.|.+||+.... ..+-.+++++
T Consensus 395 IG~LPCLE~l~L~~NPl~~~v---dYRTKVLa~F 425 (490)
T KOG1259|consen 395 IGNLPCLETLRLTGNPLAGSV---DYRTKVLARF 425 (490)
T ss_pred cccccHHHHHhhcCCCccccc---hHHHHHHHHH
Confidence 999999999999999998654 4455555554
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.38 E-value=6.3e-14 Score=127.38 Aligned_cols=142 Identities=20% Similarity=0.228 Sum_probs=72.0
Q ss_pred CCccEEEcCCCCCCC--hHHHHHHhhcCCCCCEEEcCCCCCCCccC--------------CCCCCCCccEEEecCCCCCH
Q 014792 156 TNLKELDLTGNLLSD--WKDIGAFGEQLPALAVLNLSNNLMSKEVT--------------GLPQLKSIRILVLNCTGVNW 219 (418)
Q Consensus 156 ~~L~~L~Ls~n~l~~--~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~--------------~l~~l~~L~~L~L~~n~l~~ 219 (418)
++|++||||.|.+.. ++.+.+.++.+..|++|.|++|.+..... ....-+.|+++...+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 456666666666542 33444555555666666666665542110 12233556666666665532
Q ss_pred H---HHHHHHhcCCcccEEEccCCCCCccCC-CCCCccCCCCCccEEeCCCCCCCChhhh---hhcCCCCCCCEEecCCC
Q 014792 220 M---QVEILKHSLPALEELHLMGNSISEITP-VSSPIVQGFDNLQLLNLEDNCIAEWSEI---LKLCQIRSLEQLYLNKN 292 (418)
Q Consensus 220 ~---~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~l---~~l~~l~~L~~L~l~~n 292 (418)
. .+...++..+.|+++.++.|.+..-.. .....+..+++|+.|||..|-++.-..+ ..+..+++|+.|++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 1 233334555566666666665542211 1111345556666666666655543322 34455566666666666
Q ss_pred CCCcc
Q 014792 293 NLNRI 297 (418)
Q Consensus 293 ~l~~~ 297 (418)
.++.-
T Consensus 252 ll~~~ 256 (382)
T KOG1909|consen 252 LLENE 256 (382)
T ss_pred ccccc
Confidence 65544
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.37 E-value=4.6e-14 Score=130.00 Aligned_cols=148 Identities=24% Similarity=0.196 Sum_probs=121.3
Q ss_pred eecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCCCccEEEecC
Q 014792 136 SAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNC 214 (418)
Q Consensus 136 ~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~ 214 (418)
.++.++-+++.+|..+ .+....++|..|.|+.++ +.+|+.+++|+.||||.|.|+.+.| .|.++.+|..|.+.+
T Consensus 50 ~VdCr~~GL~eVP~~L---P~~tveirLdqN~I~~iP--~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANL---PPETVEIRLDQNQISSIP--PGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred eEEccCCCcccCcccC---CCcceEEEeccCCcccCC--hhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc
Confidence 4566777777777544 478889999999999865 6899999999999999999998877 688999998888877
Q ss_pred -CCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCC
Q 014792 215 -TGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNN 293 (418)
Q Consensus 215 -n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~ 293 (418)
|+++. -....++++..|+.|.+.-|++.-+... .+..++++..|.+..|.+..+.. .++..+..++++.+.-|.
T Consensus 125 ~NkI~~-l~k~~F~gL~slqrLllNan~i~Cir~~---al~dL~~l~lLslyDn~~q~i~~-~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 125 NNKITD-LPKGAFGGLSSLQRLLLNANHINCIRQD---ALRDLPSLSLLSLYDNKIQSICK-GTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred CCchhh-hhhhHhhhHHHHHHHhcChhhhcchhHH---HHHHhhhcchhcccchhhhhhcc-ccccchhccchHhhhcCc
Confidence 88885 3445568899999999999998877654 57889999999999999887665 467777888888877766
No 31
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=99.31 E-value=2.6e-12 Score=127.94 Aligned_cols=72 Identities=42% Similarity=0.756 Sum_probs=66.6
Q ss_pred CCCCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCcccccccccc
Q 014792 5 NPESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNL 78 (418)
Q Consensus 5 ~~~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l 78 (418)
++..++||+||.+.|. .+.|||-|||......|.|+||-.|.|+||++|++.|.+||.|.. +.|-|||++.+
T Consensus 2 s~r~lkvG~RVevtgk-nl~G~VayvG~T~FA~G~WvGVvLDep~GKNnGsVqg~qYF~Cd~-ncG~FVr~sq~ 73 (1243)
T KOG0971|consen 2 SPRSLKVGTRVEVTGK-NLQGTVAYVGQTQFAEGKWVGVVLDEPKGKNNGSVQGVQYFECDE-NCGVFVRSSQV 73 (1243)
T ss_pred CCccccccceEEeccC-CccceEEEecccccccCceEEEEeccccCCCCCcccceeeEecCC-CcceEeehhhh
Confidence 5678999999999875 477999999999999999999999999999999999999999996 99999998863
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.2e-12 Score=122.30 Aligned_cols=176 Identities=24% Similarity=0.305 Sum_probs=133.8
Q ss_pred hhhHHHHHhcccccceecccCcCcCCCCC-chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCc-c
Q 014792 121 KDKIQDKFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKE-V 198 (418)
Q Consensus 121 ~~~l~~~~~~l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~-~ 198 (418)
|..+.....++++|+.|+++.|++..... .....+++|+.|.|+.|-++ |.++-..+..+|+|+.|+|..|..... .
T Consensus 161 w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls-~k~V~~~~~~fPsl~~L~L~~N~~~~~~~ 239 (505)
T KOG3207|consen 161 WFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLS-WKDVQWILLTFPSLEVLYLEANEIILIKA 239 (505)
T ss_pred HHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCC-HHHHHHHHHhCCcHHHhhhhcccccceec
Confidence 45566677888888888888887765544 23334588889999999888 788888888999999999999852222 1
Q ss_pred CCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCC---CccCCCCCccEEeCCCCCCCChhhh
Q 014792 199 TGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSS---PIVQGFDNLQLLNLEDNCIAEWSEI 275 (418)
Q Consensus 199 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~l 275 (418)
.+...++.|++|+|++|.+-..+.....+.+|.|+.|+++.+.+.++..... .....+++|++|++..|++.+|+.+
T Consensus 240 ~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl 319 (505)
T KOG3207|consen 240 TSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL 319 (505)
T ss_pred chhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccccc
Confidence 2345678899999999987644433445789999999999999887653211 1124568999999999999999887
Q ss_pred hhcCCCCCCCEEecCCCCCCcc
Q 014792 276 LKLCQIRSLEQLYLNKNNLNRI 297 (418)
Q Consensus 276 ~~l~~l~~L~~L~l~~n~l~~~ 297 (418)
..+..+++|+.|.+..|.++..
T Consensus 320 ~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 320 NHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred chhhccchhhhhhccccccccc
Confidence 7888889999999888888765
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.30 E-value=7.5e-13 Score=118.06 Aligned_cols=131 Identities=28% Similarity=0.357 Sum_probs=114.5
Q ss_pred CCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEE
Q 014792 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEEL 235 (418)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 235 (418)
..|++||||+|.|+. +.+++.-.|.++.|++|.|.+... ..+..+++|+.|+|++|.++ ....+-..+.+++.|
T Consensus 284 q~LtelDLS~N~I~~---iDESvKL~Pkir~L~lS~N~i~~v-~nLa~L~~L~~LDLS~N~Ls--~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 284 QELTELDLSGNLITQ---IDESVKLAPKLRRLILSQNRIRTV-QNLAELPQLQLLDLSGNLLA--ECVGWHLKLGNIKTL 357 (490)
T ss_pred hhhhhccccccchhh---hhhhhhhccceeEEeccccceeee-hhhhhcccceEeecccchhH--hhhhhHhhhcCEeee
Confidence 678999999999984 567788899999999999999844 45888999999999999887 344444678899999
Q ss_pred EccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcc
Q 014792 236 HLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRI 297 (418)
Q Consensus 236 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~ 297 (418)
.|++|.+.++.. ++.+-+|..||+++|+|..+..+..++++|.|+++.|.+|.+..+
T Consensus 358 ~La~N~iE~LSG-----L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 358 KLAQNKIETLSG-----LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ehhhhhHhhhhh-----hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 999999988763 677889999999999999999888999999999999999999876
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=8.6e-14 Score=133.67 Aligned_cols=173 Identities=21% Similarity=0.277 Sum_probs=102.2
Q ss_pred ccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEc
Q 014792 158 LKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHL 237 (418)
Q Consensus 158 L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 237 (418)
-...||+.|.+. ++|..+..+..|+.|.|+.|.+...++.+..+..|++|+|+.|.++ .++.-++.|| |+.|-+
T Consensus 77 t~~aDlsrNR~~---elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS--~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 77 TVFADLSRNRFS---ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS--HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred hhhhhccccccc---cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh--cCChhhhcCc-ceeEEE
Confidence 334455555555 3444444555555555555555544445555555555555555554 2333333444 666666
Q ss_pred cCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCc
Q 014792 238 MGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEE 317 (418)
Q Consensus 238 ~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~ 317 (418)
++|+++.++.. ++...+|..||.+.|.+...+ ..++.+.+|+.|++..|++..+ |..
T Consensus 151 sNNkl~~lp~~----ig~~~tl~~ld~s~nei~slp--sql~~l~slr~l~vrRn~l~~l--p~E--------------- 207 (722)
T KOG0532|consen 151 SNNKLTSLPEE----IGLLPTLAHLDVSKNEIQSLP--SQLGYLTSLRDLNVRRNHLEDL--PEE--------------- 207 (722)
T ss_pred ecCccccCCcc----cccchhHHHhhhhhhhhhhch--HHhhhHHHHHHHHHhhhhhhhC--CHH---------------
Confidence 66666666654 555566677777777666655 3466666777777777776666 332
Q ss_pred cccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCC
Q 014792 318 SYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDP 391 (418)
Q Consensus 318 ~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~ 391 (418)
+.. -.|..||+| +|+|..+|. .+.++..|++|-|.+||++.+
T Consensus 208 -l~~-LpLi~lDfS----------------------------cNkis~iPv--~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 208 -LCS-LPLIRLDFS----------------------------CNKISYLPV--DFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred -HhC-Cceeeeecc----------------------------cCceeecch--hhhhhhhheeeeeccCCCCCC
Confidence 222 246667777 777777773 677777777777777777753
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.29 E-value=2.8e-12 Score=109.35 Aligned_cols=127 Identities=33% Similarity=0.492 Sum_probs=53.7
Q ss_pred CCccEEEcCCCCCCChHHHHHHhh-cCCCCCEEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccE
Q 014792 156 TNLKELDLTGNLLSDWKDIGAFGE-QLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEE 234 (418)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~l~~~~~-~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 234 (418)
.++++|+|.+|.|+.++.+ + .+.+|+.|++++|.++.. +.+..++.|++|++++|.++... ..+...+|+|++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L----~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~ 92 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENL----GATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQE 92 (175)
T ss_dssp -----------------S------TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-C-HHHHHH-TT--E
T ss_pred cccccccccccccccccch----hhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccc-cchHHhCCcCCE
Confidence 4678888888888764432 3 467888888888888754 46777888899999998887421 233356899999
Q ss_pred EEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhh--hhcCCCCCCCEEecC
Q 014792 235 LHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI--LKLCQIRSLEQLYLN 290 (418)
Q Consensus 235 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l--~~l~~l~~L~~L~l~ 290 (418)
|++++|++.++..- ..++.+++|+.|+|.+|+++..+.. ..+..+|+|+.||-.
T Consensus 93 L~L~~N~I~~l~~l--~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNKISDLNEL--EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS---SCCCC--GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EECcCCcCCChHHh--HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 99999999876532 3477889999999999998865432 457789999998853
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.26 E-value=4.8e-12 Score=124.11 Aligned_cols=195 Identities=31% Similarity=0.412 Sum_probs=128.7
Q ss_pred eecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCC-CCCEEEcCCCCCCCccCCCCCCCCccEEEecC
Q 014792 136 SAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLP-ALAVLNLSNNLMSKEVTGLPQLKSIRILVLNC 214 (418)
Q Consensus 136 ~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~-~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~ 214 (418)
.+.+..+.+......+... +.++.|++.+|.+.. ++.....+. +|+.|++++|.+...+..+..++.|+.|+++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~-~~l~~L~l~~n~i~~---i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNISELLEL-TNLTSLDLDNNNITD---IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCchhhhcc-cceeEEecCCccccc---CccccccchhhcccccccccchhhhhhhhhccccccccccCC
Confidence 4556666553333344443 667777777777774 344444553 77777777777776555666777777777777
Q ss_pred CCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCC
Q 014792 215 TGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNL 294 (418)
Q Consensus 215 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l 294 (418)
|.+. .++......++|+.|++++|+++.++.. ......|+.|.+++|.+...+ ..+..++++..+.+.+|++
T Consensus 173 N~l~--~l~~~~~~~~~L~~L~ls~N~i~~l~~~----~~~~~~L~~l~~~~N~~~~~~--~~~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 173 NDLS--DLPKLLSNLSNLNNLDLSGNKISDLPPE----IELLSALEELDLSNNSIIELL--SSLSNLKNLSGLELSNNKL 244 (394)
T ss_pred chhh--hhhhhhhhhhhhhheeccCCccccCchh----hhhhhhhhhhhhcCCcceecc--hhhhhcccccccccCCcee
Confidence 7776 3555444667778888888887777653 334455778888887533322 3466677777777777777
Q ss_pred CcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccC
Q 014792 295 NRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDS 374 (418)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~ 374 (418)
..+ +.. +..++++++|+++ +|.+.+++ .+..
T Consensus 245 ~~~--~~~----------------~~~l~~l~~L~~s----------------------------~n~i~~i~---~~~~ 275 (394)
T COG4886 245 EDL--PES----------------IGNLSNLETLDLS----------------------------NNQISSIS---SLGS 275 (394)
T ss_pred eec--cch----------------hccccccceeccc----------------------------cccccccc---cccc
Confidence 664 222 4566778888888 88888776 3777
Q ss_pred CCCCceEEcCCCCCCCC
Q 014792 375 FPKLMDIRLSENPVSDP 391 (418)
Q Consensus 375 ~~~L~~L~l~~N~l~~~ 391 (418)
+.+|+.|++++|.+...
T Consensus 276 ~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 276 LTNLRELDLSGNSLSNA 292 (394)
T ss_pred cCccCEEeccCcccccc
Confidence 78888888888877643
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.25 E-value=5.8e-12 Score=114.71 Aligned_cols=265 Identities=20% Similarity=0.216 Sum_probs=168.9
Q ss_pred EeeCCCceEEEEech-hhHHHHHhcccccceecccCcCcCCCCC-----chhhhcCCccEEEcCCCCCCCh-HHHH----
Q 014792 107 LSASNKHVSIELVGK-DKIQDKFSKFEELTSAALPYLGVSSPGA-----NIGTIVTNLKELDLTGNLLSDW-KDIG---- 175 (418)
Q Consensus 107 ~~~~~~~~~l~~~g~-~~l~~~~~~l~~L~~L~L~~~~i~~~~~-----~~~~~~~~L~~L~Ls~n~l~~~-~~l~---- 175 (418)
.++.++.+.++...- +.+-+.+..+..++.++|++|.+..... .+.+. ++|+.-++++-.-... .++|
T Consensus 4 ~s~~gk~lkl~t~ed~~~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~-~~L~~v~~sd~ftGR~~~Ei~e~L~ 82 (382)
T KOG1909|consen 4 FSIGGKSLKLETEEDEKDVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASK-KELREVNLSDMFTGRLKDEIPEALK 82 (382)
T ss_pred eccCCeeeeeehHhhhhhHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhc-ccceeeehHhhhcCCcHHHHHHHHH
Confidence 344555555553222 3345667788889999999998765332 33333 6777777765432211 2333
Q ss_pred ---HHhhcCCCCCEEEcCCCCCCCccC-C----CCCCCCccEEEecCCCCCHHHHHH------------HHhcCCcccEE
Q 014792 176 ---AFGEQLPALAVLNLSNNLMSKEVT-G----LPQLKSIRILVLNCTGVNWMQVEI------------LKHSLPALEEL 235 (418)
Q Consensus 176 ---~~~~~l~~L~~L~Ls~n~l~~~~~-~----l~~l~~L~~L~L~~n~l~~~~~~~------------~~~~l~~L~~L 235 (418)
+.+...|+|++|+||.|-|....+ . +..+..|++|+|.+|.+....-.. .++.-+.|+.+
T Consensus 83 ~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~ 162 (382)
T KOG1909|consen 83 MLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVF 162 (382)
T ss_pred HHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence 444567899999999998875432 2 457899999999999986432222 22445689999
Q ss_pred EccCCCCCccCC-CCCCccCCCCCccEEeCCCCCCCChhh--h-hhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhcc
Q 014792 236 HLMGNSISEITP-VSSPIVQGFDNLQLLNLEDNCIAEWSE--I-LKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSA 311 (418)
Q Consensus 236 ~L~~n~l~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~--l-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 311 (418)
..++|.+..-+. .+...+...+.|+.+.++.|.|..-.. + ..+.++++|+.|||++|-++.......
T Consensus 163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L--------- 233 (382)
T KOG1909|consen 163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL--------- 233 (382)
T ss_pred EeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH---------
Confidence 999999876542 122346667899999999998865332 1 568899999999999999886532111
Q ss_pred ccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCc---ccccc-cCCCCCceEEcCCCC
Q 014792 312 HESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLA---SIDSL-DSFPKLMDIRLSENP 387 (418)
Q Consensus 312 ~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~---~~~~l-~~~~~L~~L~l~~N~ 387 (418)
...+..+++|+.|++++| .+.+-- .++.+ ...|+|+.|.+.+|.
T Consensus 234 ----akaL~s~~~L~El~l~dc----------------------------ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 234 ----AKALSSWPHLRELNLGDC----------------------------LLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred ----HHHhcccchheeeccccc----------------------------ccccccHHHHHHHHhccCCCCceeccCcch
Confidence 122567889999999944 332221 11222 235666666666666
Q ss_pred CCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 388 VSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 388 l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
++.+. ......+++..|.|+.||++.
T Consensus 282 It~da--~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 282 ITRDA--ALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred hHHHH--HHHHHHHHhcchhhHHhcCCc
Confidence 66432 233444455566666666553
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=5.2e-13 Score=128.39 Aligned_cols=171 Identities=24% Similarity=0.320 Sum_probs=96.4
Q ss_pred ccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEE
Q 014792 131 FEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRIL 210 (418)
Q Consensus 131 l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L 210 (418)
+..-...+|+.|++..++.++... ..|+.|.|+.|.+.. +|..+.++..|++|+|+.|+++..+..+..++ |+.|
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f-~~Le~liLy~n~~r~---ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAF-VSLESLILYHNCIRT---IPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVL 148 (722)
T ss_pred ccchhhhhccccccccCchHHHHH-HHHHHHHHHhcccee---cchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeE
Confidence 333444556666666555544443 555666666666553 45555666666666666666665555554443 5666
Q ss_pred EecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecC
Q 014792 211 VLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLN 290 (418)
Q Consensus 211 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~ 290 (418)
.+++|+++ .++.-++.++.|.+|+.+.|.+..++.. ++.+.+|+.|++..|.+..++. .+..++ |..||+|
T Consensus 149 i~sNNkl~--~lp~~ig~~~tl~~ld~s~nei~slpsq----l~~l~slr~l~vrRn~l~~lp~--El~~Lp-Li~lDfS 219 (722)
T KOG0532|consen 149 IVSNNKLT--SLPEEIGLLPTLAHLDVSKNEIQSLPSQ----LGYLTSLRDLNVRRNHLEDLPE--ELCSLP-LIRLDFS 219 (722)
T ss_pred EEecCccc--cCCcccccchhHHHhhhhhhhhhhchHH----hhhHHHHHHHHHhhhhhhhCCH--HHhCCc-eeeeecc
Confidence 66666655 2333334555666666666666665543 5556666666666666665553 333333 5666666
Q ss_pred CCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCC
Q 014792 291 KNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNS 333 (418)
Q Consensus 291 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 333 (418)
.|+++.+ |.. |..+.+|++|-|.+|
T Consensus 220 cNkis~i--Pv~----------------fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 220 CNKISYL--PVD----------------FRKMRHLQVLQLENN 244 (722)
T ss_pred cCceeec--chh----------------hhhhhhheeeeeccC
Confidence 6666665 333 555666666666655
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=5e-11 Score=116.89 Aligned_cols=177 Identities=29% Similarity=0.332 Sum_probs=143.0
Q ss_pred HHHhcccccceecccCcCcCCCCCchhhhcC-CccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCC
Q 014792 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVT-NLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQL 204 (418)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l 204 (418)
..+..++.++.+++.++.+..+++..... + +|+.|++++|.+.. +|..++.+++|+.|+++.|++...++.....
T Consensus 110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~-~~nL~~L~l~~N~i~~---l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~ 185 (394)
T COG4886 110 SELLELTNLTSLDLDNNNITDIPPLIGLL-KSNLKELDLSDNKIES---LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNL 185 (394)
T ss_pred hhhhcccceeEEecCCcccccCccccccc-hhhcccccccccchhh---hhhhhhccccccccccCCchhhhhhhhhhhh
Confidence 45566688999999999999998755543 4 89999999999985 5567799999999999999999777666688
Q ss_pred CCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCC
Q 014792 205 KSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSL 284 (418)
Q Consensus 205 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L 284 (418)
+.|+.|++++|.+. .++........|++|.+++|.+...+. .+..+.++..+.+.+|++...+ ..++.++++
T Consensus 186 ~~L~~L~ls~N~i~--~l~~~~~~~~~L~~l~~~~N~~~~~~~----~~~~~~~l~~l~l~~n~~~~~~--~~~~~l~~l 257 (394)
T COG4886 186 SNLNNLDLSGNKIS--DLPPEIELLSALEELDLSNNSIIELLS----SLSNLKNLSGLELSNNKLEDLP--ESIGNLSNL 257 (394)
T ss_pred hhhhheeccCCccc--cCchhhhhhhhhhhhhhcCCcceecch----hhhhcccccccccCCceeeecc--chhcccccc
Confidence 99999999999988 455554455669999999996544443 2677888999999999887753 357788889
Q ss_pred CEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCC
Q 014792 285 EQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNS 333 (418)
Q Consensus 285 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 333 (418)
++|++++|.++.+.. +..+.+++.|++++|
T Consensus 258 ~~L~~s~n~i~~i~~-------------------~~~~~~l~~L~~s~n 287 (394)
T COG4886 258 ETLDLSNNQISSISS-------------------LGSLTNLRELDLSGN 287 (394)
T ss_pred ceecccccccccccc-------------------ccccCccCEEeccCc
Confidence 999999999998832 366789999999977
No 40
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=99.10 E-value=5.9e-12 Score=124.23 Aligned_cols=189 Identities=22% Similarity=0.321 Sum_probs=139.7
Q ss_pred chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCC----------ccCCCCCCCCccEEEecCCCCCH
Q 014792 150 NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSK----------EVTGLPQLKSIRILVLNCTGVNW 219 (418)
Q Consensus 150 ~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~----------~~~~l~~l~~L~~L~L~~n~l~~ 219 (418)
.|+.. ..|+.|.|.++.+..+..+-..-+ .|++|. ..|.+.. .+.+-..+..|.+.+.+.|.+.
T Consensus 104 ~ifpF-~sLr~LElrg~~L~~~~GL~~lr~---qLe~LI-C~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 104 SIFPF-RSLRVLELRGCDLSTAKGLQELRH---QLEKLI-CHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred eeccc-cceeeEEecCcchhhhhhhHHHHH---hhhhhh-hhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 56664 899999999998886433322222 344442 2233221 1112224567888888889887
Q ss_pred HHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccC
Q 014792 220 MQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYY 299 (418)
Q Consensus 220 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~ 299 (418)
.+...+.-++.|+.|+|++|++++.. .+..++.|++|||+.|.+..++.+ ....+ +|..|.+++|.++.+.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v~-----~Lr~l~~LkhLDlsyN~L~~vp~l-~~~gc-~L~~L~lrnN~l~tL~- 248 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKVD-----NLRRLPKLKHLDLSYNCLRHVPQL-SMVGC-KLQLLNLRNNALTTLR- 248 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhhH-----HHHhcccccccccccchhcccccc-chhhh-hheeeeecccHHHhhh-
Confidence 46667788899999999999999876 378899999999999999988763 22334 3999999999998872
Q ss_pred CCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCc
Q 014792 300 PNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLM 379 (418)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~ 379 (418)
++.++.+|+.|||+ +|.|.+...+..+..+..|.
T Consensus 249 ------------------gie~LksL~~LDls----------------------------yNll~~hseL~pLwsLs~L~ 282 (1096)
T KOG1859|consen 249 ------------------GIENLKSLYGLDLS----------------------------YNLLSEHSELEPLWSLSSLI 282 (1096)
T ss_pred ------------------hHHhhhhhhccchh----------------------------HhhhhcchhhhHHHHHHHHH
Confidence 25788999999999 99998877666778888999
Q ss_pred eEEcCCCCCCCCCCcchhHHHHH
Q 014792 380 DIRLSENPVSDPGRGGISRFAII 402 (418)
Q Consensus 380 ~L~l~~N~l~~~~~~~~~~~~~i 402 (418)
.|+|.+||+-... .+++...
T Consensus 283 ~L~LeGNPl~c~p---~hRaata 302 (1096)
T KOG1859|consen 283 VLWLEGNPLCCAP---WHRAATA 302 (1096)
T ss_pred HHhhcCCccccCH---HHHHHHH
Confidence 9999999999765 4454443
No 41
>KOG4568 consensus Cytoskeleton-associated protein and related proteins [Cytoskeleton; General function prediction only]
Probab=99.06 E-value=8e-11 Score=118.47 Aligned_cols=73 Identities=37% Similarity=0.640 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCcccccccc
Q 014792 1 MNDCNPESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVH 76 (418)
Q Consensus 1 ~~~~~~~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~ 76 (418)
|-+|...++.||+||.+.+.. +|-|||+|++.+..|+|.||+-|.|.|||||++.|++||.|.... |-|++..
T Consensus 10 ~q~~~~~~~~ig~~v~v~~~~--~G~v~y~G~t~f~~G~w~GveL~~p~GKNdGsv~G~rYF~ce~~k-gif~~~~ 82 (664)
T KOG4568|consen 10 VQLDDLGQFIIGRRVWVNNVE--LGFVRYAGETDFAKGIWAGVELLEPKGKNDGSVHGKRYFQCEPKK-GIFFRQG 82 (664)
T ss_pred chhhhhhhhhhcceEEecCCc--ceeeeeccCcccccceeeceeeccccCCCCcccchhhhhcccccc-ceeeccc
Confidence 346788899999999998874 599999999999999999999999999999999999999999754 4466544
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.96 E-value=1.1e-10 Score=115.05 Aligned_cols=224 Identities=29% Similarity=0.350 Sum_probs=131.1
Q ss_pred HhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCc
Q 014792 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (418)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L 207 (418)
+..+++|+.+++.+|.|..+...+.. +++|++|+|++|.|+++.. +..++.|+.|++++|.++.. ..+..+..|
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~-~~~L~~L~ls~N~I~~i~~----l~~l~~L~~L~l~~N~i~~~-~~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSS-LVNLQVLDLSFNKITKLEG----LSTLTLLKELNLSGNLISDI-SGLESLKSL 164 (414)
T ss_pred cccccceeeeeccccchhhcccchhh-hhcchheeccccccccccc----hhhccchhhheeccCcchhc-cCCccchhh
Confidence 55666777777777777666532333 3777777777777776443 25556677777777777633 345556777
Q ss_pred cEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCC--CC
Q 014792 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS--LE 285 (418)
Q Consensus 208 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~--L~ 285 (418)
+.+++++|.+....... ...+.+++.+++.+|.+..+.. +..+..+..+++..|.++...+ +..+.. |+
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~-----~~~~~~l~~~~l~~n~i~~~~~---l~~~~~~~L~ 235 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG-----LDLLKKLVLLSLLDNKISKLEG---LNELVMLHLR 235 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc-----hHHHHHHHHhhcccccceeccC---cccchhHHHH
Confidence 77777777666322201 3556677777777777665542 3334455555666666665433 233333 67
Q ss_pred EEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCC--CCCCCCCccchhhhhhhhhhhccCCCCCCc
Q 014792 286 QLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNS--KKLPTSSHVSFVVYFLIFAFSLHASGNNMI 363 (418)
Q Consensus 286 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n--~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i 363 (418)
.+++++|.+.... .++..+..+..|++.+| ..+........+...... .|.+
T Consensus 236 ~l~l~~n~i~~~~------------------~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~--------~~~~ 289 (414)
T KOG0531|consen 236 ELYLSGNRISRSP------------------EGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLN--------DNKL 289 (414)
T ss_pred HHhcccCcccccc------------------ccccccccccccchhhccccccccccccchHHHhccC--------cchh
Confidence 7777777776651 12456677888888866 233333333333333222 4554
Q ss_pred C-CCcccc--cccCCCCCceEEcCCCCCCCCC
Q 014792 364 E-DLASID--SLDSFPKLMDIRLSENPVSDPG 392 (418)
Q Consensus 364 ~-~~~~~~--~l~~~~~L~~L~l~~N~l~~~~ 392 (418)
. .+.... .....+.++.+++..||+....
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 290 ALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred cchhhhhccccccccccccccccccCcccccc
Confidence 3 221112 2567788999999999998643
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=5.8e-09 Score=93.44 Aligned_cols=198 Identities=19% Similarity=0.200 Sum_probs=144.3
Q ss_pred chhhHHHHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC
Q 014792 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT 199 (418)
Q Consensus 120 g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~ 199 (418)
.|.+|..-+.+++.|+.|+++.|.+.....++.--..+|+.|-|.+..+. |..+-..+..+|.++.|.+|.|.+.....
T Consensus 85 dWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~-w~~~~s~l~~lP~vtelHmS~N~~rq~n~ 163 (418)
T KOG2982|consen 85 DWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS-WTQSTSSLDDLPKVTELHMSDNSLRQLNL 163 (418)
T ss_pred cHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC-hhhhhhhhhcchhhhhhhhccchhhhhcc
Confidence 45677778889999999999999887765544211378999999888766 45566778889999999999985543211
Q ss_pred ---CCC-CCCCccEEEecCCCC-CHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhh
Q 014792 200 ---GLP-QLKSIRILVLNCTGV-NWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSE 274 (418)
Q Consensus 200 ---~l~-~l~~L~~L~L~~n~l-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 274 (418)
... .-+.+++|.+..|.. .|.....+...+|++..+-+..|.+.+.... +....++.+-.|+|+.|+|.+|..
T Consensus 164 Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~e--k~se~~p~~~~LnL~~~~idswas 241 (418)
T KOG2982|consen 164 DDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSE--KGSEPFPSLSCLNLGANNIDSWAS 241 (418)
T ss_pred ccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhc--ccCCCCCcchhhhhcccccccHHH
Confidence 122 234677788877753 4666777778899999999999988776543 235567788899999999999999
Q ss_pred hhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEcc
Q 014792 275 ILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLG 331 (418)
Q Consensus 275 l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 331 (418)
+.++..++.|+.|.++++++.+--...... .--+..+++++.|+=+
T Consensus 242 vD~Ln~f~~l~dlRv~~~Pl~d~l~~~err-----------~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 242 VDALNGFPQLVDLRVSENPLSDPLRGGERR-----------FLLIARLTKVQVLNGS 287 (418)
T ss_pred HHHHcCCchhheeeccCCcccccccCCcce-----------EEEEeeccceEEecCc
Confidence 999999999999999999987642111100 0114567888887644
No 44
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.87 E-value=1.2e-09 Score=92.64 Aligned_cols=130 Identities=31% Similarity=0.410 Sum_probs=102.5
Q ss_pred ccEEEccCCCCCccCCCCCCccC-CCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhc
Q 014792 232 LEELHLMGNSISEITPVSSPIVQ-GFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVS 310 (418)
Q Consensus 232 L~~L~L~~n~l~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 310 (418)
=+++++.+.++..+.. ++ .......+||++|.+...+ .+.+++.|.+|.+++|.|+.+.+. .
T Consensus 21 e~e~~LR~lkip~ien-----lg~~~d~~d~iDLtdNdl~~l~---~lp~l~rL~tLll~nNrIt~I~p~-L-------- 83 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-----LGATLDQFDAIDLTDNDLRKLD---NLPHLPRLHTLLLNNNRITRIDPD-L-------- 83 (233)
T ss_pred ccccccccccccchhh-----ccccccccceecccccchhhcc---cCCCccccceEEecCCcceeeccc-h--------
Confidence 3456666655544322 11 2357889999999888755 478889999999999999998532 2
Q ss_pred cccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCC
Q 014792 311 AHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 390 (418)
Q Consensus 311 ~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~ 390 (418)
...+++|++|.|. +|.|..+..++.+..||+|+.|.+-+||+..
T Consensus 84 --------~~~~p~l~~L~Lt----------------------------nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 84 --------DTFLPNLKTLILT----------------------------NNSIQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred --------hhhccccceEEec----------------------------CcchhhhhhcchhccCCccceeeecCCchhc
Confidence 3557889999999 9999888777789999999999999999987
Q ss_pred CCCcchhHHHHHHhhCCceeecCcccC
Q 014792 391 PGRGGISRFAIIARLGKIKILNGSEVN 417 (418)
Q Consensus 391 ~~~~~~~~~~~i~~l~~L~~Ln~s~i~ 417 (418)
.. ..+..++-++|+|++||-..|+
T Consensus 128 k~---~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 128 KK---NYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred cc---CceeEEEEecCcceEeehhhhh
Confidence 65 6777778899999999998875
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.87 E-value=3.6e-10 Score=111.36 Aligned_cols=217 Identities=25% Similarity=0.295 Sum_probs=142.6
Q ss_pred hcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCcc
Q 014792 129 SKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIR 208 (418)
Q Consensus 129 ~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~ 208 (418)
..+..++.+++..+.|......+..+ ++|+.|++.+|.|..+. ..+..+++|++|++++|.|+.. ..+..++.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~-~~l~~l~l~~n~i~~i~---~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~ 143 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKL-KSLEALDLYDNKIEKIE---NLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLK 143 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccc-cceeeeeccccchhhcc---cchhhhhcchheeccccccccc-cchhhccchh
Confidence 45667777778888887743345554 89999999999988643 3357889999999999998854 3566677799
Q ss_pred EEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEe
Q 014792 209 ILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288 (418)
Q Consensus 209 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~ 288 (418)
.|++.+|.+. .+..+ ..+++|+.+++++|.+..+... . ...+.+++.+.+.+|.+..+.. +..+..+..++
T Consensus 144 ~L~l~~N~i~--~~~~~-~~l~~L~~l~l~~n~i~~ie~~--~-~~~~~~l~~l~l~~n~i~~i~~---~~~~~~l~~~~ 214 (414)
T KOG0531|consen 144 ELNLSGNLIS--DISGL-ESLKSLKLLDLSYNRIVDIEND--E-LSELISLEELDLGGNSIREIEG---LDLLKKLVLLS 214 (414)
T ss_pred hheeccCcch--hccCC-ccchhhhcccCCcchhhhhhhh--h-hhhccchHHHhccCCchhcccc---hHHHHHHHHhh
Confidence 9999999877 34433 4578888999999988877641 0 2567888888999988877554 33444555558
Q ss_pred cCCCCCCcccCCCCCchhhhhccccccCccccCCC--CCcEEEccCC--CCC-CCCCccchhhhhhhhhhhccCCCCCCc
Q 014792 289 LNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQ--NLCCLLLGNS--KKL-PTSSHVSFVVYFLIFAFSLHASGNNMI 363 (418)
Q Consensus 289 l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~L~~n--~~i-~~~~~~~~l~~~~~~l~~l~~~~~n~i 363 (418)
+..|.++.+.... .+. +|+.+++++| ..+ .....+.. +..|+++ .|.+
T Consensus 215 l~~n~i~~~~~l~-------------------~~~~~~L~~l~l~~n~i~~~~~~~~~~~~-------l~~l~~~-~n~~ 267 (414)
T KOG0531|consen 215 LLDNKISKLEGLN-------------------ELVMLHLRELYLSGNRISRSPEGLENLKN-------LPVLDLS-SNRI 267 (414)
T ss_pred cccccceeccCcc-------------------cchhHHHHHHhcccCcccccccccccccc-------ccccchh-hccc
Confidence 8888887763222 222 3888888855 222 11111221 2223333 4555
Q ss_pred CCCcccccccCCCCCceEEcCCCCCC
Q 014792 364 EDLASIDSLDSFPKLMDIRLSENPVS 389 (418)
Q Consensus 364 ~~~~~~~~l~~~~~L~~L~l~~N~l~ 389 (418)
.... .+...+.+..+....|++.
T Consensus 268 ~~~~---~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 268 SNLE---GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cccc---cccccchHHHhccCcchhc
Confidence 4443 4555566666666666655
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=6.9e-10 Score=99.28 Aligned_cols=183 Identities=20% Similarity=0.121 Sum_probs=110.4
Q ss_pred ccceecccCcCcCCCCC-chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCC-CCCccC--CCCCCCCcc
Q 014792 133 ELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNL-MSKEVT--GLPQLKSIR 208 (418)
Q Consensus 133 ~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~-l~~~~~--~l~~l~~L~ 208 (418)
.|+.++|++..|+...- .+.+-|.+|+.|.|.++.+.+ .+...+....+|+.|+++.+. ++.... -+..++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD--~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDD--PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCc--HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 47777777776654332 344456778888888888887 677777777888888887753 433221 145777788
Q ss_pred EEEecCCCCCHHHHHHHHhc-CCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEE
Q 014792 209 ILVLNCTGVNWMQVEILKHS-LPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287 (418)
Q Consensus 209 ~L~L~~n~l~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L 287 (418)
.|++++|.+....+..++.. -++|+.|+++++.-.-....+.-....+++|..|||+.|....-..+..+.+++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 88888887664444433322 24677777776531100001011245677888888888754443444667778888888
Q ss_pred ecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCC
Q 014792 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNS 333 (418)
Q Consensus 288 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 333 (418)
.++.|-. +.+... --+...|+|.+|++-++
T Consensus 344 SlsRCY~--i~p~~~--------------~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 344 SLSRCYD--IIPETL--------------LELNSKPSLVYLDVFGC 373 (419)
T ss_pred ehhhhcC--CChHHe--------------eeeccCcceEEEEeccc
Confidence 8877732 111111 01455678888887744
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.68 E-value=2e-09 Score=106.77 Aligned_cols=120 Identities=22% Similarity=0.225 Sum_probs=65.4
Q ss_pred CccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCC--CC
Q 014792 258 NLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNS--KK 335 (418)
Q Consensus 258 ~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n--~~ 335 (418)
.|.+.+.+.|.+..++ .++.-++.|+.|+|++|+++... . +..|++|++|||+.| ..
T Consensus 165 ~L~~a~fsyN~L~~mD--~SLqll~ale~LnLshNk~~~v~--~-----------------Lr~l~~LkhLDlsyN~L~~ 223 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMD--ESLQLLPALESLNLSHNKFTKVD--N-----------------LRRLPKLKHLDLSYNCLRH 223 (1096)
T ss_pred hHhhhhcchhhHHhHH--HHHHHHHHhhhhccchhhhhhhH--H-----------------HHhcccccccccccchhcc
Confidence 4445555555554443 23444455555555555555441 1 344555555555544 23
Q ss_pred CCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecC
Q 014792 336 LPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNG 413 (418)
Q Consensus 336 i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~ 413 (418)
+|...- ..+.|..|.++ +|.++.+. .+.++.+|+.||+++|-+.+ ......+..+..|+.|++
T Consensus 224 vp~l~~------~gc~L~~L~lr-nN~l~tL~---gie~LksL~~LDlsyNll~~-----hseL~pLwsLs~L~~L~L 286 (1096)
T KOG1859|consen 224 VPQLSM------VGCKLQLLNLR-NNALTTLR---GIENLKSLYGLDLSYNLLSE-----HSELEPLWSLSSLIVLWL 286 (1096)
T ss_pred ccccch------hhhhheeeeec-ccHHHhhh---hHHhhhhhhccchhHhhhhc-----chhhhHHHHHHHHHHHhh
Confidence 332211 11112333333 88888775 67888899999999998874 344445555666666554
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.68 E-value=2.5e-08 Score=105.59 Aligned_cols=71 Identities=17% Similarity=0.052 Sum_probs=39.8
Q ss_pred ccCCCCCcEEEccCCCCC--CCCCccchhhh-hhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCC
Q 014792 319 YLPFQNLCCLLLGNSKKL--PTSSHVSFVVY-FLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 392 (418)
Q Consensus 319 ~~~l~~L~~L~L~~n~~i--~~~~~~~~l~~-~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~ 392 (418)
+..+.+|+.|.+.+|... ........... ...++..+...+.....+.. ..--.|+|+.|++..++..++.
T Consensus 713 ~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~---~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 713 LGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT---WLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred cccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc---hhhccCcccEEEEecccccccC
Confidence 567888999999888432 11111111111 12234444443344444432 3445689999999999887655
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.68 E-value=1.6e-08 Score=70.93 Aligned_cols=61 Identities=33% Similarity=0.494 Sum_probs=53.4
Q ss_pred CcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCC
Q 014792 230 PALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNL 294 (418)
Q Consensus 230 ~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l 294 (418)
|+|++|++++|+++.+++. .+..+++|++|++++|.+..+++ ..+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~---~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPD---SFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTT---TTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHH---HHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 5789999999999988865 57888999999999999988876 6788999999999999975
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=9.2e-09 Score=92.19 Aligned_cols=168 Identities=20% Similarity=0.118 Sum_probs=126.6
Q ss_pred hhHHHHHhcccccceecccCcCcCCCCC-chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCC
Q 014792 122 DKIQDKFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG 200 (418)
Q Consensus 122 ~~l~~~~~~l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~ 200 (418)
..+...++.+.+|+.|+++++.+.+... .+++. .+|+.|+|+.+.=-.-..+.-.++.++.|..|+|+++.+......
T Consensus 200 stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vt 278 (419)
T KOG2120|consen 200 STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVT 278 (419)
T ss_pred HHHHHHHHHHHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhh
Confidence 3455668899999999999999987554 77777 899999999875333234667888999999999999987654321
Q ss_pred --CC-CCCCccEEEecCCC--CCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhh
Q 014792 201 --LP-QLKSIRILVLNCTG--VNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI 275 (418)
Q Consensus 201 --l~-~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l 275 (418)
+. --.+|+.|+++++. +....+..+...+|+|.+|||+.|-.-.- .....+..++.|++|.++.|....-..+
T Consensus 279 v~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~lSlsRCY~i~p~~~ 356 (419)
T KOG2120|consen 279 VAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHLSLSRCYDIIPETL 356 (419)
T ss_pred HHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHHHHHhcchheeeehhhhcCCChHHe
Confidence 11 23678999999873 44446777889999999999998753321 2223567889999999999976543333
Q ss_pred hhcCCCCCCCEEecCCC
Q 014792 276 LKLCQIRSLEQLYLNKN 292 (418)
Q Consensus 276 ~~l~~l~~L~~L~l~~n 292 (418)
-.+...|.|.+|++.++
T Consensus 357 ~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 357 LELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeeccCcceEEEEeccc
Confidence 56788999999999876
No 51
>PLN03150 hypothetical protein; Provisional
Probab=98.58 E-value=8.6e-08 Score=99.04 Aligned_cols=107 Identities=26% Similarity=0.278 Sum_probs=90.8
Q ss_pred CccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEE
Q 014792 157 NLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEEL 235 (418)
Q Consensus 157 ~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 235 (418)
.++.|+|++|.+.+ .+|..+..+++|+.|+|++|.+.+.+| .+..+++|+.|+|++|.+.+ .++..++.+++|+.|
T Consensus 419 ~v~~L~L~~n~L~g--~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg-~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGLRG--FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG-SIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCccc--cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCC-CCchHHhcCCCCCEE
Confidence 48899999999987 778899999999999999999997777 68999999999999999987 467777899999999
Q ss_pred EccCCCCCccCCCCCCccCC-CCCccEEeCCCCCC
Q 014792 236 HLMGNSISEITPVSSPIVQG-FDNLQLLNLEDNCI 269 (418)
Q Consensus 236 ~L~~n~l~~~~~~~~~~~~~-l~~L~~L~L~~n~l 269 (418)
++++|.+.+..+. .++. ..++..+++.+|..
T Consensus 496 ~Ls~N~l~g~iP~---~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 496 NLNGNSLSGRVPA---ALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred ECcCCcccccCCh---HHhhccccCceEEecCCcc
Confidence 9999999865543 2433 34677889998854
No 52
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.56 E-value=5.5e-08 Score=68.13 Aligned_cols=61 Identities=31% Similarity=0.456 Sum_probs=53.3
Q ss_pred CCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCC
Q 014792 282 RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNN 361 (418)
Q Consensus 282 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n 361 (418)
|+|++|++++|+|+.+.. .. +..+++|++|+++ +|
T Consensus 1 p~L~~L~l~~n~l~~i~~-~~----------------f~~l~~L~~L~l~----------------------------~N 35 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPP-DS----------------FSNLPNLETLDLS----------------------------NN 35 (61)
T ss_dssp TTESEEEETSSTESEECT-TT----------------TTTGTTESEEEET----------------------------SS
T ss_pred CcCcEEECCCCCCCccCH-HH----------------HcCCCCCCEeEcc----------------------------CC
Confidence 578999999999998842 22 7889999999999 99
Q ss_pred CcCCCcccccccCCCCCceEEcCCCCC
Q 014792 362 MIEDLASIDSLDSFPKLMDIRLSENPV 388 (418)
Q Consensus 362 ~i~~~~~~~~l~~~~~L~~L~l~~N~l 388 (418)
.+..++. ..+..+++|++|++++|++
T Consensus 36 ~l~~i~~-~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 36 NLTSIPP-DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp SESEEET-TTTTTSTTESEEEETSSSB
T ss_pred ccCccCH-HHHcCCCCCCEEeCcCCcC
Confidence 9998875 5889999999999999975
No 53
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=4.9e-09 Score=93.07 Aligned_cols=111 Identities=26% Similarity=0.320 Sum_probs=95.7
Q ss_pred CCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCC
Q 014792 256 FDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKK 335 (418)
Q Consensus 256 l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~ 335 (418)
+.+.+.|++.+|.+.++. .+.+++.|+.|.||-|+|+.+.+ +..|++|++|+|.
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~p-------------------l~rCtrLkElYLR---- 71 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLAP-------------------LQRCTRLKELYLR---- 71 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccchh-------------------HHHHHHHHHHHHH----
Confidence 457788899999888753 47789999999999999998832 6789999999999
Q ss_pred CCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 336 LPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 336 i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
.|.|.++..+..+.++|+|+.|.|..||-.... |...+..++.-+|+|+.||--.
T Consensus 72 ------------------------kN~I~sldEL~YLknlpsLr~LWL~ENPCc~~a-g~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 72 ------------------------KNCIESLDELEYLKNLPSLRTLWLDENPCCGEA-GQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred ------------------------hcccccHHHHHHHhcCchhhhHhhccCCccccc-chhHHHHHHHHcccchhccCcc
Confidence 999999988888999999999999999987655 6678888899999999999877
Q ss_pred cC
Q 014792 416 VN 417 (418)
Q Consensus 416 i~ 417 (418)
|+
T Consensus 127 Vt 128 (388)
T KOG2123|consen 127 VT 128 (388)
T ss_pred cc
Confidence 65
No 54
>PLN03150 hypothetical protein; Provisional
Probab=98.56 E-value=1.1e-07 Score=98.15 Aligned_cols=107 Identities=19% Similarity=0.223 Sum_probs=88.8
Q ss_pred CCCEEEcCCCCCCCccC-CCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccE
Q 014792 183 ALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQL 261 (418)
Q Consensus 183 ~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 261 (418)
.++.|+|++|.+.+..+ .+..+++|+.|+|++|.+.+ .++..++.+++|+.|+|++|.+++..+. .++.+++|+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~---~l~~L~~L~~ 494 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPE---SLGQLTSLRI 494 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCch---HHhcCCCCCE
Confidence 48899999999998777 68899999999999999986 4666678999999999999999876554 5889999999
Q ss_pred EeCCCCCCCChhhhhhcCC-CCCCCEEecCCCCC
Q 014792 262 LNLEDNCIAEWSEILKLCQ-IRSLEQLYLNKNNL 294 (418)
Q Consensus 262 L~L~~n~l~~~~~l~~l~~-l~~L~~L~l~~n~l 294 (418)
|+|++|.+.+..+ ..+.. ..++..+++.+|..
T Consensus 495 L~Ls~N~l~g~iP-~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 495 LNLNGNSLSGRVP-AALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred EECcCCcccccCC-hHHhhccccCceEEecCCcc
Confidence 9999999986543 34444 35678899998863
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.50 E-value=3.7e-08 Score=92.19 Aligned_cols=173 Identities=16% Similarity=0.091 Sum_probs=97.2
Q ss_pred hHHHHHhcccccceecccCcC-cCCCCC-chhhhcCCccEEEcCCCC-CCChHHHHHHhhcCCCCCEEEcCCCC-CCCc-
Q 014792 123 KIQDKFSKFEELTSAALPYLG-VSSPGA-NIGTIVTNLKELDLTGNL-LSDWKDIGAFGEQLPALAVLNLSNNL-MSKE- 197 (418)
Q Consensus 123 ~l~~~~~~l~~L~~L~L~~~~-i~~~~~-~~~~~~~~L~~L~Ls~n~-l~~~~~l~~~~~~l~~L~~L~Ls~n~-l~~~- 197 (418)
.+......+++++.|.+.++. |++..- ++...|++|+.|+|..|. +++. .+-.....+++|++|+++++. +++.
T Consensus 155 slrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~-~Lk~la~gC~kL~~lNlSwc~qi~~~g 233 (483)
T KOG4341|consen 155 SLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV-SLKYLAEGCRKLKYLNLSWCPQISGNG 233 (483)
T ss_pred hhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH-HHHHHHHhhhhHHHhhhccCchhhcCc
Confidence 344556778888888887774 332222 677778888888888854 3331 233355678888888888864 3331
Q ss_pred -cCCCCCCCCccEEEecCCC-CCHHHHHHHHhcCCcccEEEccCCC-CCccCCCCCCccCCCCCccEEeCCCCCCCChhh
Q 014792 198 -VTGLPQLKSIRILVLNCTG-VNWMQVEILKHSLPALEELHLMGNS-ISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSE 274 (418)
Q Consensus 198 -~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 274 (418)
.+-..++..++.+.+.+|. +....+......++-+..+++..+. +++.... ..-..+..|+.|+.+++.-.+-..
T Consensus 234 v~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~--~i~~~c~~lq~l~~s~~t~~~d~~ 311 (483)
T KOG4341|consen 234 VQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW--LIACGCHALQVLCYSSCTDITDEV 311 (483)
T ss_pred chHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH--HHhhhhhHhhhhcccCCCCCchHH
Confidence 1123455556666666652 2222333333455556666655542 3332211 112345677777777764433333
Q ss_pred hhhcC-CCCCCCEEecCCCC-CCccc
Q 014792 275 ILKLC-QIRSLEQLYLNKNN-LNRIY 298 (418)
Q Consensus 275 l~~l~-~l~~L~~L~l~~n~-l~~~~ 298 (418)
+.+++ +..+|+.|-++.++ +++..
T Consensus 312 l~aLg~~~~~L~~l~l~~c~~fsd~~ 337 (483)
T KOG4341|consen 312 LWALGQHCHNLQVLELSGCQQFSDRG 337 (483)
T ss_pred HHHHhcCCCceEEEeccccchhhhhh
Confidence 33443 46777777777764 55443
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.47 E-value=1.3e-07 Score=83.90 Aligned_cols=189 Identities=19% Similarity=0.237 Sum_probs=110.6
Q ss_pred eeCCCceEEEEec-hhhHHHHHhcccccceecccCcCcCCCCC-----chhhhcCCccEEEcCCCCCCCh-HH-------
Q 014792 108 SASNKHVSIELVG-KDKIQDKFSKFEELTSAALPYLGVSSPGA-----NIGTIVTNLKELDLTGNLLSDW-KD------- 173 (418)
Q Consensus 108 ~~~~~~~~l~~~g-~~~l~~~~~~l~~L~~L~L~~~~i~~~~~-----~~~~~~~~L~~L~Ls~n~l~~~-~~------- 173 (418)
++.++.++++... .+.+-+.+..+..+++++|++|.|..... .+... .+|+..+++.-..... .+
T Consensus 5 SI~gk~lKl~T~eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~-~~L~vvnfsd~ftgr~kde~~~~L~~ 83 (388)
T COG5238 5 SIGGKKLKLETKEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANV-RNLRVVNFSDAFTGRDKDELYSNLVM 83 (388)
T ss_pred ccCCceeeccccchhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhh-cceeEeehhhhhhcccHHHHHHHHHH
Confidence 4455555555332 13334556678999999999998876433 23333 6777777766443321 12
Q ss_pred HHHHhhcCCCCCEEEcCCCCCCCccCC-----CCCCCCccEEEecCCCCCHH---HHHHH---------HhcCCcccEEE
Q 014792 174 IGAFGEQLPALAVLNLSNNLMSKEVTG-----LPQLKSIRILVLNCTGVNWM---QVEIL---------KHSLPALEELH 236 (418)
Q Consensus 174 l~~~~~~l~~L~~L~Ls~n~l~~~~~~-----l~~l~~L~~L~L~~n~l~~~---~~~~~---------~~~l~~L~~L~ 236 (418)
+.+.+-.+|+|+..+||.|-|....+. ++.-+.|++|.+++|.+... .+... +..-|.|+...
T Consensus 84 Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vi 163 (388)
T COG5238 84 LLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVI 163 (388)
T ss_pred HHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence 335556789999999999988765432 56778899999999976521 22211 12345677777
Q ss_pred ccCCCCCccCCCCC-CccCCCCCccEEeCCCCCCCCh--hhh--hhcCCCCCCCEEecCCCCCCcc
Q 014792 237 LMGNSISEITPVSS-PIVQGFDNLQLLNLEDNCIAEW--SEI--LKLCQIRSLEQLYLNKNNLNRI 297 (418)
Q Consensus 237 L~~n~l~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~--~~l--~~l~~l~~L~~L~l~~n~l~~~ 297 (418)
..+|++..-+.... ..+..-..|+.+.+..|.|.-- ..+ ..+..+.+|+.|++++|-++-.
T Consensus 164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~ 229 (388)
T COG5238 164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE 229 (388)
T ss_pred eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh
Confidence 77776654432100 0122224666777777766532 111 2344566677777777666543
No 57
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.34 E-value=4.4e-07 Score=96.27 Aligned_cols=199 Identities=21% Similarity=0.147 Sum_probs=103.2
Q ss_pred cccceecccCcC--cCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccE
Q 014792 132 EELTSAALPYLG--VSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRI 209 (418)
Q Consensus 132 ~~L~~L~L~~~~--i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~ 209 (418)
+.|++|-+..+. +......++..++.|++|||++|.--. .+|..++.|-+|++|+++++.++..|..+..+..|.+
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 356666666664 444443444444777777777654333 5666777777777777777777666666666677777
Q ss_pred EEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCC----------------------
Q 014792 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDN---------------------- 267 (418)
Q Consensus 210 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n---------------------- 267 (418)
|++..+.-.. .++.....+++|++|.+....... .......+..+.+|+.+.....
T Consensus 623 Lnl~~~~~l~-~~~~i~~~L~~Lr~L~l~~s~~~~-~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 623 LNLEVTGRLE-SIPGILLELQSLRVLRLPRSALSN-DKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred eccccccccc-cccchhhhcccccEEEeecccccc-chhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhh
Confidence 7766654322 224444456666666665443111 0000001222233333322211
Q ss_pred ----CCCChhhhhhcCCCCCCCEEecCCCCCCcccCCC---C-----Cchhhhhc-cccc---cCccccCCCCCcEEEcc
Q 014792 268 ----CIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPN---N-----DTIHELVS-AHES---HEESYLPFQNLCCLLLG 331 (418)
Q Consensus 268 ----~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~---~-----~~~~~~~~-~~~~---~~~~~~~l~~L~~L~L~ 331 (418)
...... ..+..+.+|+.|.+.++.+.+..... . ...+..+. .... ........++|+.|.+.
T Consensus 701 ~~~~~~~~~~--~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~ 778 (889)
T KOG4658|consen 701 IEGCSKRTLI--SSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLV 778 (889)
T ss_pred hcccccceee--cccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEe
Confidence 111111 34667888999999888876432100 0 00111111 1111 12333457899999999
Q ss_pred CCCCC
Q 014792 332 NSKKL 336 (418)
Q Consensus 332 ~n~~i 336 (418)
.|..+
T Consensus 779 ~~~~~ 783 (889)
T KOG4658|consen 779 SCRLL 783 (889)
T ss_pred ccccc
Confidence 88433
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.23 E-value=1.5e-06 Score=74.07 Aligned_cols=126 Identities=27% Similarity=0.319 Sum_probs=57.9
Q ss_pred ceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEEecC
Q 014792 135 TSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNC 214 (418)
Q Consensus 135 ~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~ 214 (418)
++++|.+.++..+.. ++....+...+||++|.+...+ -+..++.|.+|.+++|+|+...+.+.
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~----~lp~l~rL~tLll~nNrIt~I~p~L~------------ 84 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD----NLPHLPRLHTLLLNNNRITRIDPDLD------------ 84 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccchhhcc----cCCCccccceEEecCCcceeeccchh------------
Confidence 344454444433321 2222244455555555554321 22344455555555555554443332
Q ss_pred CCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhh--hhcCCCCCCCEEecCC
Q 014792 215 TGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI--LKLCQIRSLEQLYLNK 291 (418)
Q Consensus 215 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l--~~l~~l~~L~~L~l~~ 291 (418)
..+|+|..|.+.+|.+..+..- ..+..+++|++|.+-+|.++..... ..+..+|+|+.||++.
T Consensus 85 ------------~~~p~l~~L~LtnNsi~~l~dl--~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 85 ------------TFLPNLKTLILTNNSIQELGDL--DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ------------hhccccceEEecCcchhhhhhc--chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 3344555555555555443221 0144455555555555555543322 2345566666666554
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.23 E-value=1.1e-06 Score=77.88 Aligned_cols=113 Identities=23% Similarity=0.245 Sum_probs=86.6
Q ss_pred CCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCC
Q 014792 255 GFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSK 334 (418)
Q Consensus 255 ~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 334 (418)
.+..|+.|++.+..+++.. .+-.+++|+.|.++.|......--..+ ...+|+|++|+++
T Consensus 41 ~~~~le~ls~~n~gltt~~---~~P~Lp~LkkL~lsdn~~~~~~~l~vl---------------~e~~P~l~~l~ls--- 99 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLT---NFPKLPKLKKLELSDNYRRVSGGLEVL---------------AEKAPNLKVLNLS--- 99 (260)
T ss_pred cccchhhhhhhccceeecc---cCCCcchhhhhcccCCcccccccceeh---------------hhhCCceeEEeec---
Confidence 3467777777777777643 366788999999999943322111110 3556999999999
Q ss_pred CCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCc
Q 014792 335 KLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 414 (418)
Q Consensus 335 ~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 414 (418)
.|+|.++..+..+..+++|..|++.+|..+... ..+..+...+|+|++||+-
T Consensus 100 -------------------------~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~---dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 100 -------------------------GNKIKDLSTLRPLKELENLKSLDLFNCSVTNLD---DYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred -------------------------CCccccccccchhhhhcchhhhhcccCCccccc---cHHHHHHHHhhhhcccccc
Confidence 999998888888999999999999999988633 6777778889999999987
Q ss_pred cc
Q 014792 415 EV 416 (418)
Q Consensus 415 ~i 416 (418)
.|
T Consensus 152 dv 153 (260)
T KOG2739|consen 152 DV 153 (260)
T ss_pred cc
Confidence 65
No 60
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.20 E-value=2.2e-06 Score=76.21 Aligned_cols=200 Identities=16% Similarity=0.113 Sum_probs=135.1
Q ss_pred hhHHHHHhcccccceecccCcCcCCCCC-----------chhhhcCCccEEEcCCCCCCC--hHHHHHHhhcCCCCCEEE
Q 014792 122 DKIQDKFSKFEELTSAALPYLGVSSPGA-----------NIGTIVTNLKELDLTGNLLSD--WKDIGAFGEQLPALAVLN 188 (418)
Q Consensus 122 ~~l~~~~~~l~~L~~L~L~~~~i~~~~~-----------~~~~~~~~L~~L~Ls~n~l~~--~~~l~~~~~~l~~L~~L~ 188 (418)
+.+...+.+-++|+..+++.-.....-. .+.. ||+|+..+||.|.+.. .+.+.+.++.-..|.+|.
T Consensus 48 e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlk-cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~ 126 (388)
T COG5238 48 EELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLK-CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLK 126 (388)
T ss_pred HHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhc-CCcceeeeccccccCcccchHHHHHHhcCCCceeEE
Confidence 5567778888889998888754333222 2222 6999999999999875 344567777888999999
Q ss_pred cCCCCCCCccC--------------CCCCCCCccEEEecCCCCCHHH---HHHHHhcCCcccEEEccCCCCCccCCC--C
Q 014792 189 LSNNLMSKEVT--------------GLPQLKSIRILVLNCTGVNWMQ---VEILKHSLPALEELHLMGNSISEITPV--S 249 (418)
Q Consensus 189 Ls~n~l~~~~~--------------~l~~l~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~--~ 249 (418)
+++|.+..... ....-+.|++.....|++.... ....+..-.+|+++.+..|.|..-.-. .
T Consensus 127 l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~ 206 (388)
T COG5238 127 LNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLA 206 (388)
T ss_pred eecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHH
Confidence 99998753321 1235688999999999875322 223334445899999999988643110 0
Q ss_pred CCccCCCCCccEEeCCCCCCCChhhh---hhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCc
Q 014792 250 SPIVQGFDNLQLLNLEDNCIAEWSEI---LKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLC 326 (418)
Q Consensus 250 ~~~~~~l~~L~~L~L~~n~l~~~~~l---~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 326 (418)
...+..+.+|+.|||..|.++..... ..+..++.|+.|.+.+|-++.....+.. +... -..+|+|.
T Consensus 207 ~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~------~~f~-----e~~~p~l~ 275 (388)
T COG5238 207 FLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVL------RRFN-----EKFVPNLM 275 (388)
T ss_pred HHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHH------HHhh-----hhcCCCcc
Confidence 01245678999999999988865432 3566788899999999998876332210 0000 13468888
Q ss_pred EEEccCC
Q 014792 327 CLLLGNS 333 (418)
Q Consensus 327 ~L~L~~n 333 (418)
.|-..+|
T Consensus 276 ~L~~~Yn 282 (388)
T COG5238 276 PLPGDYN 282 (388)
T ss_pred ccccchh
Confidence 8888855
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.16 E-value=1.1e-06 Score=91.05 Aligned_cols=134 Identities=21% Similarity=0.297 Sum_probs=101.3
Q ss_pred CCCCEEEcCCCCCC-CccC-CC-CCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCC
Q 014792 182 PALAVLNLSNNLMS-KEVT-GL-PQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDN 258 (418)
Q Consensus 182 ~~L~~L~Ls~n~l~-~~~~-~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 258 (418)
.+|++|++++...- ..++ .+ ..+|+|+.|.+.+-.+...++..+..++|+|..||+++..++.+. .++.+++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~-----GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS-----GISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH-----HHhcccc
Confidence 58999999886532 2222 22 367999999999988877788888899999999999999998874 4788999
Q ss_pred ccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEcc
Q 014792 259 LQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLG 331 (418)
Q Consensus 259 L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 331 (418)
|+.|.+.+=.+.....+..+..+++|+.||+|........ .. ..++ .+.-..+|+|+.||.|
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~--~i--i~qY-------lec~~~LpeLrfLDcS 258 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT--KI--IEQY-------LECGMVLPELRFLDCS 258 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch--HH--HHHH-------HHhcccCccccEEecC
Confidence 9999999988888776778889999999999987655441 11 0111 1112347888888888
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.15 E-value=1.3e-07 Score=88.56 Aligned_cols=262 Identities=17% Similarity=0.065 Sum_probs=146.1
Q ss_pred HhcccccceecccCc-CcCCCCC-chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCc---cCCCC
Q 014792 128 FSKFEELTSAALPYL-GVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKE---VTGLP 202 (418)
Q Consensus 128 ~~~l~~L~~L~L~~~-~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~---~~~l~ 202 (418)
-..++.|+.|+|..| .|++... .+.+.|++|++|+++.+.--.-..+-.....+..++.+.+.++.=.+. ...-.
T Consensus 186 a~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~ 265 (483)
T KOG4341|consen 186 ARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAA 265 (483)
T ss_pred HHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhc
Confidence 357788899999885 4555433 366778999999998886433233445556666777776665432111 00112
Q ss_pred CCCCccEEEecCC-CCCHHHHHHHHhcCCcccEEEccCCCC-CccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcC-
Q 014792 203 QLKSIRILVLNCT-GVNWMQVEILKHSLPALEELHLMGNSI-SEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLC- 279 (418)
Q Consensus 203 ~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~- 279 (418)
.+..+..+++..| .++..++..+...+..|+.|..+++.- ++... .....+..+|+.|-++.++.-+-..+..++
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l--~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVL--WALGQHCHNLQVLELSGCQQFSDRGFTMLGR 343 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHH--HHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence 3344455554444 345545555555666777777666542 21111 011234567777777777532212223343
Q ss_pred CCCCCCEEecCCCCCCccc-CCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCC--Cccchhhhhhhhhhhcc
Q 014792 280 QIRSLEQLYLNKNNLNRIY-YPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTS--SHVSFVVYFLIFAFSLH 356 (418)
Q Consensus 280 ~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~--~~~~~l~~~~~~l~~l~ 356 (418)
+++.|+.+++-.+...... .... ..+++.|+.|.|+.|..|... ..+..-..-...++.+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sl----------------s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lE 407 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASL----------------SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLE 407 (483)
T ss_pred CChhhhhhcccccceehhhhHhhh----------------ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceee
Confidence 4667777777766543221 1111 346677777777766555444 22233333344455566
Q ss_pred CCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeec
Q 014792 357 ASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILN 412 (418)
Q Consensus 357 ~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln 412 (418)
+++...+.+- .++.+..+++|+.+++-++.-.... +...+..++|++++.-
T Consensus 408 L~n~p~i~d~-~Le~l~~c~~Leri~l~~~q~vtk~----~i~~~~~~lp~i~v~a 458 (483)
T KOG4341|consen 408 LDNCPLITDA-TLEHLSICRNLERIELIDCQDVTKE----AISRFATHLPNIKVHA 458 (483)
T ss_pred ecCCCCchHH-HHHHHhhCcccceeeeechhhhhhh----hhHHHHhhCccceehh
Confidence 6544455443 3467788999999999888766432 2233355678887653
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.14 E-value=3.4e-06 Score=87.36 Aligned_cols=137 Identities=20% Similarity=0.292 Sum_probs=80.6
Q ss_pred cccceecccCcCcCCCCC--chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccE
Q 014792 132 EELTSAALPYLGVSSPGA--NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRI 209 (418)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~--~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~ 209 (418)
.+|+.|++++...-.... .++.++|.|+.|.+++-.+..- ++...+.++|+|..||+|+++++.. .+++.+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 456677776654322222 6666677777777777665542 3556677777777777777777644 45667777777
Q ss_pred EEecCCCCCH-HHHHHHHhcCCcccEEEccCCCCCccCCC---CCCccCCCCCccEEeCCCCCCCC
Q 014792 210 LVLNCTGVNW-MQVEILKHSLPALEELHLMGNSISEITPV---SSPIVQGFDNLQLLNLEDNCIAE 271 (418)
Q Consensus 210 L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~l~~L~~L~L~~n~l~~ 271 (418)
|.+.+=.+.. ..+..+ ..+++|+.||+|.......+.. ..+.-..++.|+.||.++..+..
T Consensus 200 L~mrnLe~e~~~~l~~L-F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDL-FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHH-hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 7776655543 233343 4677777777776544332210 00012235667777776665543
No 64
>KOG4568 consensus Cytoskeleton-associated protein and related proteins [Cytoskeleton; General function prediction only]
Probab=98.14 E-value=6.7e-07 Score=90.55 Aligned_cols=71 Identities=41% Similarity=0.707 Sum_probs=63.9
Q ss_pred CCCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccC
Q 014792 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLS 79 (418)
Q Consensus 6 ~~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~ 79 (418)
+....||+||.+.|. ..|++||.|...+..|.|.|+|.|+|.|+++|++.+++||+|.. .+|.|....++.
T Consensus 152 ~~~l~v~dr~l~~gq--~~~~~r~~~~t~fa~g~w~~~elde~~~~~d~sv~k~~~~~~k~-ky~~f~~v~kv~ 222 (664)
T KOG4568|consen 152 MLGLRVGDRVLVGGQ--KSGTLRYSGHTKFASGSWLGVELDEPVGKNDGSVGKVRYFQCKP-KYGKFAPVQKVF 222 (664)
T ss_pred ccccccccceeecCc--ccchhhhhccccccCCcccchhcccccccccccccccccccCcc-hhcchhHHHHHh
Confidence 567999999998764 67999999999999999999999999999999999999999996 889998766553
No 65
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=98.09 E-value=5.5e-06 Score=79.09 Aligned_cols=76 Identities=29% Similarity=0.456 Sum_probs=62.4
Q ss_pred CCCCCEEEeCCCC---ceeeEEEEEeecCCCCceEEEEEEeCCC-----CCCCCEECCEEeeecCCCCccccccccccCC
Q 014792 9 YKLGQRVHSANDA---RRIGTVKYVGEVQGYSGTWLGVDWDYGN-----GKHDGSINGVRYFQAKSQKSGSFVRVHNLSP 80 (418)
Q Consensus 9 ~~~g~rv~~~~~~---~~~gtvr~~g~~~~~~~~w~gve~d~~~-----gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~ 80 (418)
++||+-|.|...+ +-+|-|||+|.-|+..+.|+|||.||.+ +..||+..|.|||.|-. +..-|+.......
T Consensus 236 L~IGslveV~np~~~~~~ygvVrWIG~pP~~~~Vl~gve~edet~~~~~~~~dgs~~g~Rlftc~d-~~a~Fv~~~scs~ 314 (724)
T KOG3556|consen 236 LKIGSLVEVENPETMRRVYGVVRWIGEPPEASGVLYGVEFEDETSQWPSSNQDGSSSGDRLFTCFD-TNANFVMSGSCSV 314 (724)
T ss_pred ceecceEEecCCccccccceeeEecccCCcccCceEeeeecCccccCccccccCcccCceeeeecc-ccceeeEcCCCCc
Confidence 7899999997531 5689999999999999999999999876 55599999999999986 6778887766655
Q ss_pred CCcch
Q 014792 81 GISLP 85 (418)
Q Consensus 81 ~~s~~ 85 (418)
..+|.
T Consensus 315 d~rfa 319 (724)
T KOG3556|consen 315 DPRFA 319 (724)
T ss_pred Ccccc
Confidence 55553
No 66
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.07 E-value=4.5e-07 Score=72.46 Aligned_cols=92 Identities=24% Similarity=0.169 Sum_probs=60.4
Q ss_pred HHHHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCC
Q 014792 124 IQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQ 203 (418)
Q Consensus 124 l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~ 203 (418)
.+..+.....|+.++|++|.+.+.++.+...++.++.|+|++|.|+ .+|..+..++.|+.|+++.|.+...+..+..
T Consensus 45 avy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis---dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~ 121 (177)
T KOG4579|consen 45 AVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS---DVPEELAAMPALRSLNLRFNPLNAEPRVIAP 121 (177)
T ss_pred HHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh---hchHHHhhhHHhhhcccccCccccchHHHHH
Confidence 3344555566666777777777777666555567777777777777 3566677777777777777777665554555
Q ss_pred CCCccEEEecCCCCC
Q 014792 204 LKSIRILVLNCTGVN 218 (418)
Q Consensus 204 l~~L~~L~L~~n~l~ 218 (418)
+.++-.|+..+|...
T Consensus 122 L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 122 LIKLDMLDSPENARA 136 (177)
T ss_pred HHhHHHhcCCCCccc
Confidence 666666666666544
No 67
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.04 E-value=2.9e-07 Score=73.55 Aligned_cols=86 Identities=26% Similarity=0.315 Sum_probs=41.8
Q ss_pred CccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEE
Q 014792 157 NLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELH 236 (418)
Q Consensus 157 ~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 236 (418)
.|+..+|++|.+.+++ ++.....|.++.|+++.|.++..+..+..++.|+.|++..|.+.- .+..+..+.++..|+
T Consensus 54 el~~i~ls~N~fk~fp--~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~--~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFP--KKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNA--EPRVIAPLIKLDMLD 129 (177)
T ss_pred eEEEEecccchhhhCC--HHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcccc--chHHHHHHHhHHHhc
Confidence 4444555555555422 122223345555555555555555455555555555555555542 222222345555555
Q ss_pred ccCCCCCccC
Q 014792 237 LMGNSISEIT 246 (418)
Q Consensus 237 L~~n~l~~~~ 246 (418)
..+|.+..++
T Consensus 130 s~~na~~eid 139 (177)
T KOG4579|consen 130 SPENARAEID 139 (177)
T ss_pred CCCCccccCc
Confidence 5555554444
No 68
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=5.3e-06 Score=53.52 Aligned_cols=39 Identities=46% Similarity=0.596 Sum_probs=28.4
Q ss_pred CCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCc
Q 014792 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKE 197 (418)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~ 197 (418)
++|++|++++|.|++ +|..+++|++|++|++++|+++..
T Consensus 1 ~~L~~L~l~~N~i~~---l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITD---LPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SS---HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCcc---cCchHhCCCCCCEEEecCCCCCCC
Confidence 478888888888885 455578888888888888887743
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.98 E-value=4.7e-07 Score=80.68 Aligned_cols=107 Identities=28% Similarity=0.324 Sum_probs=86.3
Q ss_pred CCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCC
Q 014792 203 QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIR 282 (418)
Q Consensus 203 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~ 282 (418)
.+.+.+.|++.+|.++. + .+...++.|+.|.|+-|.|+.+.+ +..|++|+.|.|..|.|.++..+..+.++|
T Consensus 17 dl~~vkKLNcwg~~L~D--I-sic~kMp~lEVLsLSvNkIssL~p-----l~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD--I-SICEKMPLLEVLSLSVNKISSLAP-----LQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred HHHHhhhhcccCCCccH--H-HHHHhcccceeEEeeccccccchh-----HHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 35677889999999984 3 334789999999999999999875 688999999999999999999988999999
Q ss_pred CCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEE
Q 014792 283 SLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLL 329 (418)
Q Consensus 283 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 329 (418)
+|+.|.|..|.-.+...+.-- ...+..+|+|+.||
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR------------~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYR------------RKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCcccccchhHH------------HHHHHHcccchhcc
Confidence 999999999987665332211 11145688888886
No 70
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=9e-06 Score=52.44 Aligned_cols=38 Identities=34% Similarity=0.546 Sum_probs=19.4
Q ss_pred CccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcc
Q 014792 258 NLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRI 297 (418)
Q Consensus 258 ~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~ 297 (418)
+|++|++++|.|+++++ .++++++|+.|++++|+|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~--~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP--ELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGG--HGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCc--hHhCCCCCCEEEecCCCCCCC
Confidence 45555555555555442 255555555555555555544
No 71
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=97.80 E-value=1.8e-05 Score=80.68 Aligned_cols=70 Identities=31% Similarity=0.454 Sum_probs=59.3
Q ss_pred CCCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccCCCC
Q 014792 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPGI 82 (418)
Q Consensus 6 ~~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~~~ 82 (418)
|+-..+|.||.+..+ .-+-|||+|+.+..+ |||-|+|+||+||+..|++||+|.+ +.|-|++++++-...
T Consensus 1628 pew~~~ge~v~~~~h--~t~v~r~vg~tefq~----gveld~p~gkndgs~gg~qyfrc~p-~~g~~vr~s~~~~~~ 1697 (1714)
T KOG0241|consen 1628 PEWRGFGERVVTVEH--TTNVLRDVGFTEFQG----GVELDDPDGKNDGSAGGLQYFRCLP-NKGGGVRVSDGLHHP 1697 (1714)
T ss_pred chhhhcCceeEEeec--ccceeeecchhhccC----cccccCCCCCcCccccceeEEeecC-CCCCcccchhhccCc
Confidence 456789999998665 448999999887766 9999999999999999999999995 899999988765433
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.00024 Score=68.47 Aligned_cols=143 Identities=15% Similarity=0.114 Sum_probs=89.4
Q ss_pred HHHHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCC-CCCCccCCCC
Q 014792 124 IQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNN-LMSKEVTGLP 202 (418)
Q Consensus 124 l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n-~l~~~~~~l~ 202 (418)
+-..+..+.+++.|++++|.+..++ .+.++|+.|.+++|.--. .+|..+ .++|++|++++| .+...+
T Consensus 44 a~~r~~~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLt--sLP~~L--P~nLe~L~Ls~Cs~L~sLP---- 111 (426)
T PRK15386 44 ITPQIEEARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLT--TLPGSI--PEGLEKLTVCHCPEISGLP---- 111 (426)
T ss_pred HHHHHHHhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcc--cCCchh--hhhhhheEccCcccccccc----
Confidence 3345677899999999999888876 244689999998754321 445443 257999999988 555333
Q ss_pred CCCCccEEEecCCCCCHHHHHHHHhcC-CcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCC
Q 014792 203 QLKSIRILVLNCTGVNWMQVEILKHSL-PALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQI 281 (418)
Q Consensus 203 ~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l 281 (418)
.+|+.|.+..+... .+ ..+ ++|+.|.+.++........ + -.-.++|++|++++|.....+. .+.
T Consensus 112 --~sLe~L~L~~n~~~--~L----~~LPssLk~L~I~~~n~~~~~~l-p--~~LPsSLk~L~Is~c~~i~LP~--~LP-- 176 (426)
T PRK15386 112 --ESVRSLEIKGSATD--SI----KNVPNGLTSLSINSYNPENQARI-D--NLISPSLKTLSLTGCSNIILPE--KLP-- 176 (426)
T ss_pred --cccceEEeCCCCCc--cc----ccCcchHhheecccccccccccc-c--cccCCcccEEEecCCCcccCcc--ccc--
Confidence 35777888766544 22 223 3677887754331111000 0 0012579999999887654332 122
Q ss_pred CCCCEEecCCCC
Q 014792 282 RSLEQLYLNKNN 293 (418)
Q Consensus 282 ~~L~~L~l~~n~ 293 (418)
.+|+.|+++.+.
T Consensus 177 ~SLk~L~ls~n~ 188 (426)
T PRK15386 177 ESLQSITLHIEQ 188 (426)
T ss_pred ccCcEEEecccc
Confidence 478888888764
No 73
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.44 E-value=2.6e-05 Score=69.36 Aligned_cols=105 Identities=24% Similarity=0.365 Sum_probs=59.5
Q ss_pred CCCCCEEEcCCCCCCCccCCCCCCCCccEEEecCC--CCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCC
Q 014792 181 LPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCT--GVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDN 258 (418)
Q Consensus 181 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n--~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 258 (418)
+..|+.|.+.+..++. ...+..+++|+.|.++.| +... .+.-++..+|+|++|++++|++..+..- ..+..+.+
T Consensus 42 ~~~le~ls~~n~gltt-~~~~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~Nki~~lstl--~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT-LTNFPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSGNKIKDLSTL--RPLKELEN 117 (260)
T ss_pred ccchhhhhhhccceee-cccCCCcchhhhhcccCCcccccc-cceehhhhCCceeEEeecCCcccccccc--chhhhhcc
Confidence 3444455554444442 224555666777777766 3333 3444445668888888888877653221 13566677
Q ss_pred ccEEeCCCCCCCChhhh--hhcCCCCCCCEEec
Q 014792 259 LQLLNLEDNCIAEWSEI--LKLCQIRSLEQLYL 289 (418)
Q Consensus 259 L~~L~L~~n~l~~~~~l--~~l~~l~~L~~L~l 289 (418)
|..|++.+|..+..... ..+.-+++|+.|+-
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 88888888766553321 23444666666553
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.22 E-value=0.002 Score=62.17 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=67.9
Q ss_pred cCCccEEEcCCCCCCChHHHHHHhhcCC-CCCEEEcCCC-CCCCccCCCCCCCCccEEEecCC-CCCHHHHHHHHhcCCc
Q 014792 155 VTNLKELDLTGNLLSDWKDIGAFGEQLP-ALAVLNLSNN-LMSKEVTGLPQLKSIRILVLNCT-GVNWMQVEILKHSLPA 231 (418)
Q Consensus 155 ~~~L~~L~Ls~n~l~~~~~l~~~~~~l~-~L~~L~Ls~n-~l~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~ 231 (418)
|.+++.|++++|.+.. +| .+| +|++|.++++ .+...+..+ ..+|++|.+++| .+. .+ .++
T Consensus 51 ~~~l~~L~Is~c~L~s---LP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~--sL------P~s 113 (426)
T PRK15386 51 ARASGRLYIKDCDIES---LP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS--GL------PES 113 (426)
T ss_pred hcCCCEEEeCCCCCcc---cC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc--cc------ccc
Confidence 4888999999987775 34 244 5889998874 343333223 257888888887 332 12 236
Q ss_pred ccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCC-CCChhhhhhcCCC-CCCCEEecCCCCCCcc
Q 014792 232 LEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNC-IAEWSEILKLCQI-RSLEQLYLNKNNLNRI 297 (418)
Q Consensus 232 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~l~~l~~l-~~L~~L~l~~n~l~~~ 297 (418)
|+.|++..+....+... .++|+.|.+..+. ..... + -..+ ++|++|++++|....+
T Consensus 114 Le~L~L~~n~~~~L~~L-------PssLk~L~I~~~n~~~~~~-l--p~~LPsSLk~L~Is~c~~i~L 171 (426)
T PRK15386 114 VRSLEIKGSATDSIKNV-------PNGLTSLSINSYNPENQAR-I--DNLISPSLKTLSLTGCSNIIL 171 (426)
T ss_pred cceEEeCCCCCcccccC-------cchHhheeccccccccccc-c--ccccCCcccEEEecCCCcccC
Confidence 77788776655433210 1356777765432 11110 0 0122 4788899888875543
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.00 E-value=0.00047 Score=69.20 Aligned_cols=113 Identities=25% Similarity=0.256 Sum_probs=51.8
Q ss_pred cCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCC-C-CCCcc----CCCCCCCCccEEEecCCC-CCHHHHHHHHh
Q 014792 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNN-L-MSKEV----TGLPQLKSIRILVLNCTG-VNWMQVEILKH 227 (418)
Q Consensus 155 ~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n-~-l~~~~----~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~ 227 (418)
+++|+.|.+.++.-..-..+-.....++.|+.|+++++ . +.... .....+.+|+.|+++.+. ++...+..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 35555555555432221113344455556666666542 1 11000 012244555666666555 45444555545
Q ss_pred cCCcccEEEccCCC-CCccCCCCCCccCCCCCccEEeCCCCCC
Q 014792 228 SLPALEELHLMGNS-ISEITPVSSPIVQGFDNLQLLNLEDNCI 269 (418)
Q Consensus 228 ~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~L~~n~l 269 (418)
.+++|++|.+.++. +++..- ......++.|++|+++.+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl--~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGL--VSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHH--HHHHHhcCcccEEeeecCcc
Confidence 56666666655544 232210 01223345566666665544
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.89 E-value=0.00068 Score=68.05 Aligned_cols=116 Identities=22% Similarity=0.176 Sum_probs=82.8
Q ss_pred HhcccccceecccCc-CcCCCCC-chhhhcCCccEEEcCCC-CCCCh--HHHHHHhhcCCCCCEEEcCCCC-CCCccC-C
Q 014792 128 FSKFEELTSAALPYL-GVSSPGA-NIGTIVTNLKELDLTGN-LLSDW--KDIGAFGEQLPALAVLNLSNNL-MSKEVT-G 200 (418)
Q Consensus 128 ~~~l~~L~~L~L~~~-~i~~~~~-~~~~~~~~L~~L~Ls~n-~l~~~--~~l~~~~~~l~~L~~L~Ls~n~-l~~~~~-~ 200 (418)
...++.|+.+.+..+ .+..... .+...+++|+.|+++++ ..... .........+++|+.|+++++. ++...- .
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 345788999999887 4444331 45555799999999973 22211 1123455667899999999987 443211 2
Q ss_pred C-CCCCCccEEEecCCC-CCHHHHHHHHhcCCcccEEEccCCCCC
Q 014792 201 L-PQLKSIRILVLNCTG-VNWMQVEILKHSLPALEELHLMGNSIS 243 (418)
Q Consensus 201 l-~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~ 243 (418)
+ ..+++|++|.+.+|. ++...+..+...+++|++|+++.+...
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 2 247899999988887 788889999999999999999987653
No 77
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=96.77 E-value=0.00098 Score=65.35 Aligned_cols=96 Identities=23% Similarity=0.177 Sum_probs=63.7
Q ss_pred CCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCC
Q 014792 279 CQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHAS 358 (418)
Q Consensus 279 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~ 358 (418)
.+.+.+..++|++|++..+..-... ....|+|++|+|+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~ssl---------------sq~apklk~L~LS--------------------------- 252 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSL---------------SQIAPKLKTLDLS--------------------------- 252 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHH---------------HHhcchhheeecc---------------------------
Confidence 3566777788888877766332221 3456899999999
Q ss_pred CCC--CcCCCcccccccCCCCCceEEcCCCCCCCCCCcc-hhHHHHHHhhCCceeecCcccCC
Q 014792 359 GNN--MIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGG-ISRFAIIARLGKIKILNGSEVNS 418 (418)
Q Consensus 359 ~~n--~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~-~~~~~~i~~l~~L~~Ln~s~i~~ 418 (418)
+| .+.+-+.+..++. ..|++|-+.+||+.+..... .....+...+|+|..|||-+|.+
T Consensus 253 -~N~~~~~~~~el~K~k~-l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LDG~ev~~ 313 (585)
T KOG3763|consen 253 -HNHSKISSESELDKLKG-LPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLDGVEVQP 313 (585)
T ss_pred -cchhhhcchhhhhhhcC-CCHHHeeecCCccccchhhhHHHHHHHHHhcchheeecCcccCc
Confidence 66 5544443333333 46999999999998765221 12223455899999999988754
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.28 E-value=0.0002 Score=71.25 Aligned_cols=182 Identities=24% Similarity=0.256 Sum_probs=128.1
Q ss_pred EEEechhhHHHHHhcccccceecccCcCcCCCCC-ch----hhhcCCccEEEcCCCCCCCh--HHHHHHhhcCCCCCEEE
Q 014792 116 IELVGKDKIQDKFSKFEELTSAALPYLGVSSPGA-NI----GTIVTNLKELDLTGNLLSDW--KDIGAFGEQLPALAVLN 188 (418)
Q Consensus 116 l~~~g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~-~~----~~~~~~L~~L~Ls~n~l~~~--~~l~~~~~~l~~L~~L~ 188 (418)
+...|.+.+...+.....|..|++++|.+.+.+. .+ ...-+.+++|++..|.+... ..+.+.+.....++.++
T Consensus 99 l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~ 178 (478)
T KOG4308|consen 99 LGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELD 178 (478)
T ss_pred cccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHH
Confidence 4455778888999999999999999999985543 11 11114577788888888763 45677788888999999
Q ss_pred cCCCCCCCc-----cCC----CCCCCCccEEEecCCCCCHHHHHH---HHhcCCc-ccEEEccCCCCCccC-CCCCCccC
Q 014792 189 LSNNLMSKE-----VTG----LPQLKSIRILVLNCTGVNWMQVEI---LKHSLPA-LEELHLMGNSISEIT-PVSSPIVQ 254 (418)
Q Consensus 189 Ls~n~l~~~-----~~~----l~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~-L~~L~L~~n~l~~~~-~~~~~~~~ 254 (418)
++.|.+... ... +....++++|.+.+|.++...... .+...+. +.++++..|.+.+.. ....+.+.
T Consensus 179 l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~ 258 (478)
T KOG4308|consen 179 LSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLS 258 (478)
T ss_pred HHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhc
Confidence 999987522 112 235788999999999877544333 3344555 677899999887541 11111244
Q ss_pred CC-CCccEEeCCCCCCCChhhh---hhcCCCCCCCEEecCCCCCCcc
Q 014792 255 GF-DNLQLLNLEDNCIAEWSEI---LKLCQIRSLEQLYLNKNNLNRI 297 (418)
Q Consensus 255 ~l-~~L~~L~L~~n~l~~~~~l---~~l~~l~~L~~L~l~~n~l~~~ 297 (418)
.+ ..++.++++.|.|.+.... ..+..++.++.+.++.|.+.+.
T Consensus 259 ~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 259 VLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred ccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 44 6789999999999865432 4566778999999999988764
No 79
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.03 E-value=0.019 Score=46.28 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=12.7
Q ss_pred cCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecC
Q 014792 253 VQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLN 290 (418)
Q Consensus 253 ~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~ 290 (418)
+..+++|+.+.+..+ +..++. ..+.++++|+.+.+.
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~-~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGD-NAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-T-TTTTT-TT-EEEEET
T ss_pred ccccccccccccccc-ccccce-eeeeccccccccccc
Confidence 334444444444432 333332 234444444444443
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.95 E-value=0.02 Score=46.19 Aligned_cols=88 Identities=10% Similarity=0.177 Sum_probs=36.3
Q ss_pred CCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCC
Q 014792 201 LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ 280 (418)
Q Consensus 201 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~ 280 (418)
+..+.+|+.+.+..+ +.. .-...+..+++|+.+.+..+ +..+... .+..+++++.+.+.. .+..++. ..+..
T Consensus 8 F~~~~~l~~i~~~~~-~~~-I~~~~F~~~~~l~~i~~~~~-~~~i~~~---~F~~~~~l~~i~~~~-~~~~i~~-~~F~~ 79 (129)
T PF13306_consen 8 FYNCSNLESITFPNT-IKK-IGENAFSNCTSLKSINFPNN-LTSIGDN---AFSNCKSLESITFPN-NLKSIGD-NAFSN 79 (129)
T ss_dssp TTT-TT--EEEETST---E-E-TTTTTT-TT-SEEEESST-TSCE-TT---TTTT-TT-EEEEETS-TT-EE-T-TTTTT
T ss_pred HhCCCCCCEEEECCC-eeE-eChhhccccccccccccccc-cccccee---eeecccccccccccc-ccccccc-ccccc
Confidence 344455555555432 221 11122344556666666553 4444433 355555666666644 3333332 34555
Q ss_pred CCCCCEEecCCCCCCcc
Q 014792 281 IRSLEQLYLNKNNLNRI 297 (418)
Q Consensus 281 l~~L~~L~l~~n~l~~~ 297 (418)
+++|+.+.+..+ +..+
T Consensus 80 ~~~l~~i~~~~~-~~~i 95 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITEI 95 (129)
T ss_dssp -TTECEEEETTT--BEE
T ss_pred cccccccccCcc-ccEE
Confidence 666666666554 4444
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.60 E-value=0.00031 Score=69.89 Aligned_cols=140 Identities=26% Similarity=0.257 Sum_probs=68.0
Q ss_pred ccEEEcCCCCCCC--hHHHHHHhhcCCCCCEEEcCCCCCCCcc-----CCCCCC-CCccEEEecCCCCCHHHH---HHHH
Q 014792 158 LKELDLTGNLLSD--WKDIGAFGEQLPALAVLNLSNNLMSKEV-----TGLPQL-KSIRILVLNCTGVNWMQV---EILK 226 (418)
Q Consensus 158 L~~L~Ls~n~l~~--~~~l~~~~~~l~~L~~L~Ls~n~l~~~~-----~~l~~l-~~L~~L~L~~n~l~~~~~---~~~~ 226 (418)
+..|.|.+|.+.+ .+.+...+..++.|+.|++++|.+.... ..+... +.+++|.+..|.++.... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 4445555555443 2344455555556666666666555211 011121 445555555555543222 2223
Q ss_pred hcCCcccEEEccCCCCCccCCC-CCCc----cCCCCCccEEeCCCCCCCChhh--h-hhcCCCCC-CCEEecCCCCCCcc
Q 014792 227 HSLPALEELHLMGNSISEITPV-SSPI----VQGFDNLQLLNLEDNCIAEWSE--I-LKLCQIRS-LEQLYLNKNNLNRI 297 (418)
Q Consensus 227 ~~l~~L~~L~L~~n~l~~~~~~-~~~~----~~~l~~L~~L~L~~n~l~~~~~--l-~~l~~l~~-L~~L~l~~n~l~~~ 297 (418)
.....++.++++.|.+...... .... +....++++|++.+|.++.... + ..+...+. +..|++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 3345666666666665321100 0011 1234567777777776664321 1 23444454 56677777776654
No 82
>PRK10708 hypothetical protein; Provisional
Probab=94.96 E-value=0.16 Score=33.55 Aligned_cols=57 Identities=30% Similarity=0.387 Sum_probs=41.0
Q ss_pred CCCCEEEe--CCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccc
Q 014792 10 KLGQRVHS--ANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRV 75 (418)
Q Consensus 10 ~~g~rv~~--~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~ 75 (418)
+|+|||.+ +|++|+.|+|.-+-+. .+|.-+=|.-+|- =.|..||+......|.|+.+
T Consensus 2 kvnD~VtVKTDG~~rR~G~iLavE~F--~EG~MyLvaL~dY-------P~GiWFFNE~~~~~G~FVep 60 (62)
T PRK10708 2 KVNDRVTVKTDGGPRRPGVVLAVEEF--SEGTMYLVSLEDY-------PLGIWFFNEAGHQDGIFVEK 60 (62)
T ss_pred ccccEEEEecCCCccccceEEEEeec--cCcEEEEEEcCcC-------CCceEEEeccCCCCceEecc
Confidence 58899877 4666788888877644 4566666665432 24688998887788888866
No 83
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=94.63 E-value=0.2 Score=33.09 Aligned_cols=58 Identities=28% Similarity=0.393 Sum_probs=41.3
Q ss_pred CCCCEEEe--CCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCcccccccc
Q 014792 10 KLGQRVHS--ANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVH 76 (418)
Q Consensus 10 ~~g~rv~~--~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~ 76 (418)
+|+|||.+ +|+.|+.|+|.-+-+. .+|.-+=|.-+|- =.|+-||+......|.|+.+.
T Consensus 2 kvnD~VtVKTDG~~rR~G~ilavE~F--~EG~MYLvaL~dY-------P~GiWFFNE~~~~dG~FVep~ 61 (62)
T PF10781_consen 2 KVNDRVTVKTDGGPRREGVILAVEPF--NEGTMYLVALEDY-------PAGIWFFNEKDSPDGTFVEPR 61 (62)
T ss_pred ccccEEEEecCCcccccceEEEEeec--cCcEEEEEEcCcC-------CcceEEEecCCCCCcEEeeec
Confidence 58899887 4666788888877644 4577666665543 246889988887888888663
No 84
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.61 E-value=0.033 Score=29.77 Aligned_cols=15 Identities=33% Similarity=0.366 Sum_probs=7.9
Q ss_pred CCEEEcCCCCCCCcc
Q 014792 184 LAVLNLSNNLMSKEV 198 (418)
Q Consensus 184 L~~L~Ls~n~l~~~~ 198 (418)
|++|++++|+++..+
T Consensus 2 L~~Ldls~n~l~~ip 16 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIP 16 (22)
T ss_dssp ESEEEETSSEESEEG
T ss_pred ccEEECCCCcCEeCC
Confidence 555555555555333
No 85
>PTZ00243 ABC transporter; Provisional
Probab=93.08 E-value=0.12 Score=59.59 Aligned_cols=60 Identities=28% Similarity=0.504 Sum_probs=49.2
Q ss_pred CCCCCEEEeCCCCceeeEEEEEeecC--CCCceEEEEEEeCCC--------------CCCCCEECCEEeeecCCCC
Q 014792 9 YKLGQRVHSANDARRIGTVKYVGEVQ--GYSGTWLGVDWDYGN--------------GKHDGSINGVRYFQAKSQK 68 (418)
Q Consensus 9 ~~~g~rv~~~~~~~~~gtvr~~g~~~--~~~~~w~gve~d~~~--------------gk~~g~~~g~~yf~~~~~~ 68 (418)
-+||-||.+..|...-|+.||||.+. +.++..-||||+-|. +-|+|.+.|.+.|++....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (1560)
T PTZ00243 125 CMVGAEVVSTLDASSRGVLRWVGVPQQGGYTRMMAGVEWSVPPALRTAARSDDSGASPFFNGVAHGEHLFTPEQSN 200 (1560)
T ss_pred cccccEEEeeccccccceEEeecccccCCCcceeeeeeeccCchhhhcccCCCCCCccccccccccccccCcccCC
Confidence 47999999987777779999999986 467899999999551 3589999999999887543
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=92.72 E-value=0.14 Score=50.72 Aligned_cols=84 Identities=23% Similarity=0.268 Sum_probs=61.8
Q ss_pred hhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCC--CCCCccC-CCCCCCCccEEEecCCCCCH------HHHH
Q 014792 153 TIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNN--LMSKEVT-GLPQLKSIRILVLNCTGVNW------MQVE 223 (418)
Q Consensus 153 ~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n--~l~~~~~-~l~~l~~L~~L~L~~n~l~~------~~~~ 223 (418)
...+.+..++|++|.+..++.+......-|+|..|+|++| .+....+ .-.+...|++|.+.+|.+.. ..+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 3357888999999999999888888888999999999999 4443322 22244568999999997642 2233
Q ss_pred HHHhcCCcccEEE
Q 014792 224 ILKHSLPALEELH 236 (418)
Q Consensus 224 ~~~~~l~~L~~L~ 236 (418)
.+...+|+|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 4445788888776
No 87
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.39 E-value=0.14 Score=25.45 Aligned_cols=11 Identities=36% Similarity=0.643 Sum_probs=3.3
Q ss_pred ccEEeCCCCCC
Q 014792 259 LQLLNLEDNCI 269 (418)
Q Consensus 259 L~~L~L~~n~l 269 (418)
|+.|++++|.+
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33444444433
No 88
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.60 E-value=0.064 Score=46.34 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=10.5
Q ss_pred ccccCCCCCceEEcCCCCCC
Q 014792 370 DSLDSFPKLMDIRLSENPVS 389 (418)
Q Consensus 370 ~~l~~~~~L~~L~l~~N~l~ 389 (418)
..+..+++|+.|.|.+=|..
T Consensus 170 ~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 170 ACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHHHHhhhhHHHHhcCchhh
Confidence 34555555555555554443
No 89
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.87 E-value=0.021 Score=50.27 Aligned_cols=89 Identities=17% Similarity=0.085 Sum_probs=72.6
Q ss_pred HHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCC
Q 014792 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206 (418)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~ 206 (418)
.+..++..+.|+++.+++...+..+..+ +.+..|+++.|.+. .+|+-++++..+..+++..|..+..+.++...+.
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n~s~~-t~~~rl~~sknq~~---~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKNFSIL-TRLVRLDLSKNQIK---FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccchHHH-HHHHHHhccHhhHh---hChhhHHHHHHHHHHHhhccchhhCCccccccCC
Confidence 4567788888999998887776655554 78889999988877 4677788888888999999998888878889999
Q ss_pred ccEEEecCCCCCH
Q 014792 207 IRILVLNCTGVNW 219 (418)
Q Consensus 207 L~~L~L~~n~l~~ 219 (418)
++++++-++.+..
T Consensus 113 ~k~~e~k~~~~~~ 125 (326)
T KOG0473|consen 113 PKKNEQKKTEFFR 125 (326)
T ss_pred cchhhhccCcchH
Confidence 9999999888654
No 90
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.75 E-value=0.18 Score=43.58 Aligned_cols=82 Identities=18% Similarity=0.153 Sum_probs=57.6
Q ss_pred CCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccC--CCCCCccCCCCCccEEeCCCCC-CCChhhhhhcCCC
Q 014792 205 KSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEIT--PVSSPIVQGFDNLQLLNLEDNC-IAEWSEILKLCQI 281 (418)
Q Consensus 205 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~l~~L~~L~L~~n~-l~~~~~l~~l~~l 281 (418)
..++.++.+++.+....+..+ ..++.++.|.+.++.--+-- .. .-+-.++|+.|++++|. |++.. +..+.++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~---l~~~~~~L~~L~lsgC~rIT~~G-L~~L~~l 175 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLER---LGGLAPSLQDLDLSGCPRITDGG-LACLLKL 175 (221)
T ss_pred ceEEEEecCCchHHHHHHHHH-hccchhhhheeccccchhhHHHHH---hcccccchheeeccCCCeechhH-HHHHHHh
Confidence 457888888888887666665 78888888888887632210 00 01134789999999884 55543 5678889
Q ss_pred CCCCEEecCC
Q 014792 282 RSLEQLYLNK 291 (418)
Q Consensus 282 ~~L~~L~l~~ 291 (418)
++|+.|.+.+
T Consensus 176 knLr~L~l~~ 185 (221)
T KOG3864|consen 176 KNLRRLHLYD 185 (221)
T ss_pred hhhHHHHhcC
Confidence 9999888765
No 91
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.56 E-value=0.25 Score=26.84 Aligned_cols=15 Identities=47% Similarity=0.773 Sum_probs=9.0
Q ss_pred CCccEEEcCCCCCCC
Q 014792 156 TNLKELDLTGNLLSD 170 (418)
Q Consensus 156 ~~L~~L~Ls~n~l~~ 170 (418)
++|++|+|++|.|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 667777777777664
No 92
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.54 E-value=0.016 Score=51.09 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=59.7
Q ss_pred cCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccC
Q 014792 253 VQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGN 332 (418)
Q Consensus 253 ~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 332 (418)
+..+...+.||++.|.+.... ..+..++.|..|+++.|.+..+ |.. +.....+..+++.
T Consensus 38 i~~~kr~tvld~~s~r~vn~~--~n~s~~t~~~rl~~sknq~~~~--~~d----------------~~q~~e~~~~~~~- 96 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLG--KNFSILTRLVRLDLSKNQIKFL--PKD----------------AKQQRETVNAASH- 96 (326)
T ss_pred hhccceeeeehhhhhHHHhhc--cchHHHHHHHHHhccHhhHhhC--hhh----------------HHHHHHHHHHHhh-
Confidence 455567777787777665543 2345566777778887777666 333 3444555566666
Q ss_pred CCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCC
Q 014792 333 SKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVS 389 (418)
Q Consensus 333 n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~ 389 (418)
+|.....| ......|+++.+++.+|++.
T Consensus 97 ---------------------------~n~~~~~p--~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 97 ---------------------------KNNHSQQP--KSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred ---------------------------ccchhhCC--ccccccCCcchhhhccCcch
Confidence 77777777 47788899999999988876
No 93
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.42 E-value=0.94 Score=25.00 Aligned_cols=19 Identities=47% Similarity=0.559 Sum_probs=11.7
Q ss_pred CCCCCEEEcCCCCCCCccC
Q 014792 181 LPALAVLNLSNNLMSKEVT 199 (418)
Q Consensus 181 l~~L~~L~Ls~n~l~~~~~ 199 (418)
+++|++|+|++|++...++
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 3566667777766665544
No 94
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.42 E-value=0.94 Score=25.00 Aligned_cols=19 Identities=47% Similarity=0.559 Sum_probs=11.7
Q ss_pred CCCCCEEEcCCCCCCCccC
Q 014792 181 LPALAVLNLSNNLMSKEVT 199 (418)
Q Consensus 181 l~~L~~L~Ls~n~l~~~~~ 199 (418)
+++|++|+|++|++...++
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 3566667777766665544
No 95
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=84.20 E-value=4.2 Score=27.13 Aligned_cols=42 Identities=33% Similarity=0.592 Sum_probs=34.0
Q ss_pred CCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCC
Q 014792 9 YKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGK 51 (418)
Q Consensus 9 ~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk 51 (418)
|++||.|....+. ..=||.++|+..+..+.|+=-.|=+..|.
T Consensus 1 f~~GDvV~LKSGG-p~MTV~~v~~~~~~~~~~v~C~WFd~~~~ 42 (53)
T PF09926_consen 1 FKIGDVVQLKSGG-PRMTVTEVGPNAGASGGWVECQWFDGHGE 42 (53)
T ss_pred CCCCCEEEEccCC-CCeEEEEccccccCCCCeEEEEeCCCCCc
Confidence 6799999987652 45899999999888889988888776554
No 96
>PF07154 DUF1392: Protein of unknown function (DUF1392); InterPro: IPR009824 This family consists of several hypothetical cyanobacterial proteins of around 150 residues in length, which seem to be specific to Anabaena species. The function of this family is unknown.
Probab=77.93 E-value=3.2 Score=33.53 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=30.8
Q ss_pred CCCCCCCCEEEeCCCCceeeEEEEEeecCCCCceE-EEEEEeCCC
Q 014792 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTW-LGVDWDYGN 49 (418)
Q Consensus 6 ~~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w-~gve~d~~~ 49 (418)
.|.+..||||.+.-.. +-=+.|-+--+.--++.| ++|||-.|+
T Consensus 85 kp~F~LGd~V~~~f~~-~~pkqRlIlGv~lv~~~W~Y~VE~~SPt 128 (150)
T PF07154_consen 85 KPAFRLGDRVEFRFYS-DGPKQRLILGVFLVNNSWFYAVEWRSPT 128 (150)
T ss_pred CCceecCCEEEEEecC-CCCceEEEEEEEEecCceEEEEEEeCCc
Confidence 3689999999874210 114567666666667888 999999997
No 97
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.85 E-value=2 Score=23.99 Aligned_cols=17 Identities=35% Similarity=0.692 Sum_probs=13.2
Q ss_pred CCCCCEEecCCCCCCcc
Q 014792 281 IRSLEQLYLNKNNLNRI 297 (418)
Q Consensus 281 l~~L~~L~l~~n~l~~~ 297 (418)
+++|+.|+++.|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 35788888888888766
No 98
>PHA02146 hypothetical protein
Probab=76.35 E-value=3.3 Score=28.81 Aligned_cols=46 Identities=17% Similarity=0.388 Sum_probs=33.6
Q ss_pred CCCCCCEEEeCCCCc-------eeeEEEEEeecCCCCceE-EEEEEeCCCCCCC
Q 014792 8 SYKLGQRVHSANDAR-------RIGTVKYVGEVQGYSGTW-LGVDWDYGNGKHD 53 (418)
Q Consensus 8 ~~~~g~rv~~~~~~~-------~~gtvr~~g~~~~~~~~w-~gve~d~~~gk~~ 53 (418)
+++||...++.+..| .-||--||-.++...+.| +||.|....|+.+
T Consensus 2 ~iei~kkyrv~da~rf~~ehgi~ng~ef~v~~~d~dgd~~s~~iswng~dg~s~ 55 (86)
T PHA02146 2 QIEIGKKYRVTDAERFMAEHGITNGTEFTVTNIDDDGDLYTYDISWNGRDGKSA 55 (86)
T ss_pred eeeeCceEEeccHHHHHHHhCcCCCcEEEeeccccCCCeEeecccccCccCCcc
Confidence 466777777665433 227777888888889999 9999987766553
No 99
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=73.57 E-value=6.8 Score=31.40 Aligned_cols=21 Identities=43% Similarity=0.822 Sum_probs=14.4
Q ss_pred EEEEEe--CCCCCC-CC--EECCEEe
Q 014792 41 LGVDWD--YGNGKH-DG--SINGVRY 61 (418)
Q Consensus 41 ~gve~d--~~~gk~-~g--~~~g~~y 61 (418)
-+|.|- ||.|+| +| .++|++|
T Consensus 105 gvIHWTH~dp~~~h~~Gwl~~nG~~Y 130 (131)
T PF11948_consen 105 GVIHWTHHDPRGRHPDGWLKHNGQRY 130 (131)
T ss_pred CEEEeeccCCCCCCCCeeEEECCEEC
Confidence 466777 566887 55 6678877
No 100
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=69.55 E-value=6.7 Score=22.11 Aligned_cols=17 Identities=24% Similarity=0.095 Sum_probs=8.8
Q ss_pred CccEEEecCCCCCHHHH
Q 014792 206 SIRILVLNCTGVNWMQV 222 (418)
Q Consensus 206 ~L~~L~L~~n~l~~~~~ 222 (418)
+|++|+|++|.+.....
T Consensus 3 ~L~~LdL~~N~i~~~G~ 19 (28)
T smart00368 3 SLRELDLSNNKLGDEGA 19 (28)
T ss_pred ccCEEECCCCCCCHHHH
Confidence 45555555555554333
No 101
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=69.49 E-value=3.5 Score=22.99 Aligned_cols=16 Identities=38% Similarity=0.426 Sum_probs=10.1
Q ss_pred CCCEEEcCCCCCCCcc
Q 014792 183 ALAVLNLSNNLMSKEV 198 (418)
Q Consensus 183 ~L~~L~Ls~n~l~~~~ 198 (418)
+|+.|++++|+++..+
T Consensus 3 ~L~~L~vs~N~Lt~LP 18 (26)
T smart00364 3 SLKELNVSNNQLTSLP 18 (26)
T ss_pred ccceeecCCCccccCc
Confidence 5666677777666544
No 102
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=63.66 E-value=6.2 Score=21.99 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=16.5
Q ss_pred hhHHHHHHhhCCceeecCcc
Q 014792 396 ISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 396 ~~~~~~i~~l~~L~~Ln~s~ 415 (418)
..+..+++.+|+|++||...
T Consensus 3 ~YR~~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 3 HYREKVIRLLPQLRKLDXXX 22 (26)
T ss_pred cHHHHHHHHCCccceecccc
Confidence 35677899999999999764
No 103
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=60.26 E-value=14 Score=20.25 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=12.7
Q ss_pred CCCCceEEcCCCCCC
Q 014792 375 FPKLMDIRLSENPVS 389 (418)
Q Consensus 375 ~~~L~~L~l~~N~l~ 389 (418)
+++|++|+|++|+-.
T Consensus 1 c~~L~~L~l~~C~~i 15 (26)
T smart00367 1 CPNLRELDLSGCTNI 15 (26)
T ss_pred CCCCCEeCCCCCCCc
Confidence 578999999999754
No 104
>cd01736 LSm14_N LSm14 (also known as RAP55) belongs to a family of Sm-like proteins that associate with RNA to form the core domain of the ribonucleoprotein particles involved in a variety of RNA processing events including pre-mRNA splicing, telomere replication, and mRNA degradation. Members of this family share a highly conserved Sm fold, containing an N-terminal helix followed by a strongly bent five-stranded antiparallel beta-sheet, that associates with other Sm proteins to form hexameric and heptameric ring structures. In addition to the N-terminal Sm-like domain, LSm14 has an uncharacterized C-terminal domain containing a conserved DFDF box. In Xenopus laevis, LSm14 is an oocyte-specific constituent of ribonucleoprotein particles.
Probab=50.18 E-value=34 Score=24.52 Aligned_cols=22 Identities=14% Similarity=0.380 Sum_probs=16.9
Q ss_pred CCCCCEEEeCCCCceeeEEEEEeecC
Q 014792 9 YKLGQRVHSANDARRIGTVKYVGEVQ 34 (418)
Q Consensus 9 ~~~g~rv~~~~~~~~~gtvr~~g~~~ 34 (418)
-.||.+|....... |||+|.+.
T Consensus 3 ~~IG~~isLISk~~----iRYeGiL~ 24 (74)
T cd01736 3 PYIGSKISLISKSD----IRYEGILY 24 (74)
T ss_pred cccCceEEEEecCC----cEEEEEEE
Confidence 37999998876544 99999763
No 105
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=42.12 E-value=17 Score=43.78 Aligned_cols=35 Identities=26% Similarity=0.247 Sum_probs=31.0
Q ss_pred CCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcc
Q 014792 360 NNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGG 395 (418)
Q Consensus 360 ~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~ 395 (418)
+|+|..++. ..+..+++|++|+|++||+.+++.-.
T Consensus 4 nN~LstLp~-g~F~~L~sL~~LdLsgNPw~CDC~L~ 38 (2740)
T TIGR00864 4 NNKISTIEE-GICANLCNLSEIDLSGNPFECDCGLA 38 (2740)
T ss_pred CCcCCccCh-HHhccCCCceEEEeeCCccccccccH
Confidence 999999986 57889999999999999999998543
No 106
>PF12701 LSM14: Scd6-like Sm domain; PDB: 2RM4_A 2FB7_A 2VC8_A 2VXF_A 2VXE_A.
Probab=34.13 E-value=42 Score=25.54 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=18.3
Q ss_pred CCCCCCCCEEEeCCCCceeeEEEEEeec
Q 014792 6 PESYKLGQRVHSANDARRIGTVKYVGEV 33 (418)
Q Consensus 6 ~~~~~~g~rv~~~~~~~~~gtvr~~g~~ 33 (418)
|..-.||.+|.+..... |||.|.+
T Consensus 2 m~~~~IGs~ISlisk~~----iRYeG~L 25 (96)
T PF12701_consen 2 MADPYIGSKISLISKSD----IRYEGIL 25 (96)
T ss_dssp -CCCCTTCEEEEEETTT----EEEEEEE
T ss_pred ccccccCCEEEEEECCC----cEEEEEE
Confidence 55678999999866432 9999976
No 107
>PF13403 Hint_2: Hint domain
Probab=31.53 E-value=62 Score=26.74 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=20.5
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEeec
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVGEV 33 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g~~ 33 (418)
+.+++||+|...++ .+-+|+|+|..
T Consensus 19 e~L~~GD~V~T~dg--g~~~V~wig~~ 43 (147)
T PF13403_consen 19 EDLRPGDRVLTRDG--GFQPVRWIGRR 43 (147)
T ss_pred eccCCCCEEEecCC--CEEEEEEEEEE
Confidence 56899999998775 56899999954
No 108
>PRK04306 50S ribosomal protein L21e; Reviewed
Probab=30.87 E-value=49 Score=25.21 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=24.8
Q ss_pred CCCCCCCEEEeCCCCceeeEE-------EEE---eecCCCCceEEEEEE
Q 014792 7 ESYKLGQRVHSANDARRIGTV-------KYV---GEVQGYSGTWLGVDW 45 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtv-------r~~---g~~~~~~~~w~gve~ 45 (418)
..|++||+|.+..| ++| +|- |.|.+..+.-+||+-
T Consensus 33 ~~y~~Gd~V~I~~d----~sv~kGmPh~~yhGkTG~V~~v~~~A~~V~v 77 (98)
T PRK04306 33 QEFEEGDKVHIVID----PSVHKGMPHPRFHGKTGTVVGKRGRAYIVEV 77 (98)
T ss_pred HhccCCCEEEEEec----CceecCCccccccCCCEEEEeecCeEEEEEE
Confidence 35999999999876 445 343 355666777788875
No 109
>PF08750 CNP1: CNP1-like family; InterPro: IPR014861 This group of proteins are likely to be lipoproteins. CNP1 (cryptic neisserial protein) has been expressed in Escherichia coli and shown to be localised periplasmicly [].
Probab=29.88 E-value=87 Score=25.65 Aligned_cols=40 Identities=25% Similarity=0.477 Sum_probs=27.9
Q ss_pred CCCCCCC-CCEEEeCCCCceeeEEEEEeecCCCCc----eEEEEEEeCC
Q 014792 5 NPESYKL-GQRVHSANDARRIGTVKYVGEVQGYSG----TWLGVDWDYG 48 (418)
Q Consensus 5 ~~~~~~~-g~rv~~~~~~~~~gtvr~~g~~~~~~~----~w~gve~d~~ 48 (418)
+...|.| ..-|.++.| |+|||+=-+....| .+.||.|+..
T Consensus 33 ~~~~f~ID~~Sisvg~D----gvVRY~lv~~S~~Ga~NvsyEGirC~t~ 77 (139)
T PF08750_consen 33 SPLKFFIDPKSISVGPD----GVVRYTLVVRSPSGARNVSYEGIRCATG 77 (139)
T ss_pred CCceEEEchhheEECCC----CcEEEEEEEcCCCCcccceEEeEeecCC
Confidence 3345666 444888776 99999998754333 5899999843
No 110
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=29.44 E-value=50 Score=28.72 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=15.6
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEee
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVGE 32 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g~ 32 (418)
..+++||||.+++ ..|.|.-+|.
T Consensus 59 ~pf~vGD~I~i~~---~~G~V~~I~l 81 (206)
T PF00924_consen 59 RPFKVGDRIEIGG---VEGRVEEIGL 81 (206)
T ss_dssp -SS-TT-EEESSS----EEEEEEE-S
T ss_pred CCccCCCEEEEEE---eehHHHhcCc
Confidence 4799999999975 5699999994
No 111
>PF10816 DUF2760: Domain of unknown function (DUF2760); InterPro: IPR021212 This is a bacterial family of uncharacterised proteins.
Probab=29.22 E-value=1.7e+02 Score=23.31 Aligned_cols=39 Identities=21% Similarity=0.396 Sum_probs=28.4
Q ss_pred CCCCEEEeCCCCceeeEEEEEeecCCCC---c-----eEEEEEEeCCC
Q 014792 10 KLGQRVHSANDARRIGTVKYVGEVQGYS---G-----TWLGVDWDYGN 49 (418)
Q Consensus 10 ~~g~rv~~~~~~~~~gtvr~~g~~~~~~---~-----~w~gve~d~~~ 49 (418)
.-|+||.+..+. ....||.+|.|.|.+ | -|...+..=|.
T Consensus 63 ~Egsrvtv~~gf-da~~irLtGnV~G~pPf~G~L~H~GWra~~v~LPk 109 (125)
T PF10816_consen 63 EEGSRVTVPAGF-DASAIRLTGNVVGEPPFTGTLVHRGWRATEVRLPK 109 (125)
T ss_pred CCCCeEeccCCC-CccceEEEeeecccCCCceeEeeCCeEeeEEECCC
Confidence 569999997553 578999999997743 3 37666666554
No 112
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=26.01 E-value=2.4e+02 Score=28.31 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=12.3
Q ss_pred ccCCCCCceEEcCCCCCCC
Q 014792 372 LDSFPKLMDIRLSENPVSD 390 (418)
Q Consensus 372 l~~~~~L~~L~l~~N~l~~ 390 (418)
+..-+.+.+|++++|.-.+
T Consensus 436 l~stqtl~kldisgn~mgd 454 (553)
T KOG4242|consen 436 LLSTQTLAKLDISGNGMGD 454 (553)
T ss_pred hccCcccccccccCCCccc
Confidence 4455667777777776543
No 113
>PRK04980 hypothetical protein; Provisional
Probab=23.89 E-value=1e+02 Score=23.77 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=13.4
Q ss_pred CCCCCCCEEEeC--CCCceeeEEE
Q 014792 7 ESYKLGQRVHSA--NDARRIGTVK 28 (418)
Q Consensus 7 ~~~~~g~rv~~~--~~~~~~gtvr 28 (418)
..+++||+|.+. ++++-+|+|+
T Consensus 30 ~~~~~G~~~~V~~~e~g~~~c~ie 53 (102)
T PRK04980 30 SHFKPGDVLRVGTFEDDRYFCTIE 53 (102)
T ss_pred cCCCCCCEEEEEECCCCcEEEEEE
Confidence 358899998884 3333344443
No 114
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=23.62 E-value=65 Score=21.49 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=20.4
Q ss_pred CCCCCCEEEeCCCCceeeEEEEEeecCCCC--ceEEEEEEeCCCCCCCCEE
Q 014792 8 SYKLGQRVHSANDARRIGTVKYVGEVQGYS--GTWLGVDWDYGNGKHDGSI 56 (418)
Q Consensus 8 ~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~--~~w~gve~d~~~gk~~g~~ 56 (418)
-+..|+||..+|-.++.=||.-. +|.. ..+=.+.-||-.|+-+|++
T Consensus 5 pf~~GdrVQlTD~Kgr~~Ti~L~---~G~~fhThrG~i~HDdlIG~~eGsV 52 (54)
T PF14801_consen 5 PFRAGDRVQLTDPKGRKHTITLE---PGGEFHTHRGAIRHDDLIGRPEGSV 52 (54)
T ss_dssp S--TT-EEEEEETT--EEEEE-----TT-EEEETTEEEEHHHHTT--TTEE
T ss_pred CCCCCCEEEEccCCCCeeeEEEC---CCCeEEcCccccchhheecCCCcEE
Confidence 47899999998876655555432 2211 1123445555556666654
No 115
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=22.50 E-value=65 Score=17.77 Aligned_cols=13 Identities=46% Similarity=0.626 Sum_probs=6.6
Q ss_pred ccEEEcCCCCCCC
Q 014792 158 LKELDLTGNLLSD 170 (418)
Q Consensus 158 L~~L~Ls~n~l~~ 170 (418)
|++|.|....+.+
T Consensus 2 LKtL~L~~v~f~~ 14 (26)
T PF07723_consen 2 LKTLHLDSVVFSD 14 (26)
T ss_pred CeEEEeeEEEECC
Confidence 4555555554443
No 116
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=21.94 E-value=61 Score=39.45 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=27.2
Q ss_pred EccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCC
Q 014792 236 HLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAE 271 (418)
Q Consensus 236 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 271 (418)
+|++|+|+.++.. .+..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g---~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEG---ICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChH---HhccCCCceEEEeeCCcccc
Confidence 5789999988875 57778899999999997764
No 117
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=20.85 E-value=1.5e+02 Score=21.86 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=19.2
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEe
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVG 31 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g 31 (418)
.+.++||+|...++ =+|||.-++
T Consensus 36 ~~L~~Gd~VvT~gG--i~G~V~~i~ 58 (84)
T TIGR00739 36 ESLKKGDKVLTIGG--IIGTVTKIA 58 (84)
T ss_pred HhCCCCCEEEECCC--eEEEEEEEe
Confidence 36899999999886 679998777
No 118
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=20.45 E-value=1.3e+02 Score=28.05 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=19.2
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEee
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVGE 32 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g~ 32 (418)
..|+|||+|.++| ..|||.-+|.
T Consensus 128 rpf~vGD~I~i~~---~~G~V~~I~~ 150 (286)
T PRK10334 128 RPFRAGEYVDLGG---VAGTVLSVQI 150 (286)
T ss_pred CCCCCCCEEEECC---EEEEEEEEEe
Confidence 4699999999965 5699999983
No 119
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=20.21 E-value=1.4e+02 Score=23.50 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=19.1
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEe
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVG 31 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g 31 (418)
.++++||+|...|+ -+|||.-++
T Consensus 35 ~sLk~GD~VvT~GG--i~G~V~~I~ 57 (113)
T PRK06531 35 NAIQKGDEVVTIGG--LYGTVDEVD 57 (113)
T ss_pred HhcCCCCEEEECCC--cEEEEEEEe
Confidence 36899999998886 679998776
Done!