Query 014792
Match_columns 418
No_of_seqs 321 out of 3671
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 17:54:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 7.2E-24 2.5E-28 202.6 16.2 252 128-414 62-341 (347)
2 4fcg_A Uncharacterized protein 99.9 1.5E-24 5.1E-29 205.9 11.0 230 122-414 69-309 (328)
3 4fmz_A Internalin; leucine ric 99.9 1.1E-23 3.8E-28 201.3 16.4 239 127-389 105-346 (347)
4 1ozn_A Reticulon 4 receptor; N 99.9 1.3E-23 4.5E-28 195.3 15.5 217 121-392 23-241 (285)
5 2z66_A Variable lymphocyte rec 99.9 1E-24 3.5E-29 204.9 7.9 233 132-392 28-264 (306)
6 3o6n_A APL1; leucine-rich repe 99.9 4.3E-24 1.5E-28 207.6 12.0 244 127-390 88-353 (390)
7 2id5_A Lingo-1, leucine rich r 99.9 2.9E-24 1E-28 214.3 11.0 264 132-415 32-305 (477)
8 1p9a_G Platelet glycoprotein I 99.9 3.1E-23 1.1E-27 193.3 16.4 206 128-392 6-211 (290)
9 1ogq_A PGIP-2, polygalacturona 99.9 2.6E-25 8.8E-30 209.8 2.3 228 123-414 67-299 (313)
10 4eco_A Uncharacterized protein 99.9 6.2E-24 2.1E-28 219.3 12.2 270 124-413 239-543 (636)
11 2o6q_A Variable lymphocyte rec 99.9 1.4E-22 4.7E-27 187.0 19.4 206 133-394 17-223 (270)
12 4eco_A Uncharacterized protein 99.9 4.6E-24 1.6E-28 220.2 10.5 257 149-415 200-497 (636)
13 4ecn_A Leucine-rich repeat pro 99.9 2.5E-23 8.5E-28 219.7 16.1 270 124-414 481-784 (876)
14 3zyj_A Leucine-rich repeat-con 99.9 1.5E-23 5.1E-28 207.1 13.5 212 127-393 83-296 (440)
15 1ozn_A Reticulon 4 receptor; N 99.9 5.9E-23 2E-27 190.9 16.6 219 135-415 14-234 (285)
16 3zyj_A Leucine-rich repeat-con 99.9 1.8E-23 6.3E-28 206.5 13.8 232 121-415 55-288 (440)
17 3v47_A TOLL-like receptor 5B a 99.9 1.5E-23 5E-28 207.9 12.9 126 258-393 276-412 (455)
18 3o53_A Protein LRIM1, AGAP0063 99.9 8.6E-24 2.9E-28 199.7 10.2 240 126-414 28-270 (317)
19 3zyi_A Leucine-rich repeat-con 99.9 2.4E-23 8.1E-28 206.4 13.7 213 126-393 93-307 (452)
20 3o6n_A APL1; leucine-rich repe 99.9 4.9E-23 1.7E-27 200.2 15.4 201 116-333 52-258 (390)
21 3zyi_A Leucine-rich repeat-con 99.9 4.5E-23 1.5E-27 204.4 15.2 223 132-415 75-299 (452)
22 2id5_A Lingo-1, leucine rich r 99.9 3.5E-23 1.2E-27 206.5 13.6 253 125-392 73-336 (477)
23 3oja_B Anopheles plasmodium-re 99.9 3.1E-23 1.1E-27 212.6 13.4 243 127-389 94-358 (597)
24 4fcg_A Uncharacterized protein 99.9 2E-23 6.9E-28 198.1 11.0 217 116-390 88-315 (328)
25 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-23 6E-28 211.0 10.8 89 125-219 38-129 (520)
26 3t6q_A CD180 antigen; protein- 99.9 5.9E-23 2E-27 210.9 14.6 269 126-415 272-556 (606)
27 3rgz_A Protein brassinosteroid 99.9 7.7E-24 2.6E-28 223.3 8.1 168 123-295 333-527 (768)
28 1wwl_A Monocyte differentiatio 99.9 3.8E-23 1.3E-27 194.8 12.0 210 128-391 91-311 (312)
29 3rgz_A Protein brassinosteroid 99.9 3E-23 1E-27 218.8 11.7 268 125-415 385-713 (768)
30 3oja_A Leucine-rich immune mol 99.9 3.1E-23 1E-27 207.3 10.6 249 115-413 13-269 (487)
31 1o6v_A Internalin A; bacterial 99.9 1.5E-22 5.3E-27 201.3 15.6 153 128-297 64-236 (466)
32 1xku_A Decorin; proteoglycan, 99.9 9.1E-23 3.1E-27 193.7 12.9 247 127-415 71-328 (330)
33 3v47_A TOLL-like receptor 5B a 99.9 4E-22 1.4E-26 197.5 18.0 229 126-367 97-412 (455)
34 1xku_A Decorin; proteoglycan, 99.9 3.3E-22 1.1E-26 189.9 16.5 245 132-414 52-301 (330)
35 1h6u_A Internalin H; cell adhe 99.9 7.3E-23 2.5E-27 192.5 11.9 196 129-392 38-233 (308)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.8E-23 2.3E-27 208.7 12.5 89 126-219 70-160 (562)
37 4b6m_A Tubulin-specific chaper 99.9 6.4E-23 2.2E-27 148.0 8.6 74 6-81 3-77 (84)
38 2e3i_A Restin; CAP-Gly, cytopl 99.9 8.1E-23 2.8E-27 149.6 9.2 79 7-88 1-79 (86)
39 2z66_A Variable lymphocyte rec 99.9 1.3E-23 4.4E-28 197.4 6.4 231 128-390 48-288 (306)
40 3oja_B Anopheles plasmodium-re 99.9 1.7E-22 5.7E-27 207.2 15.0 195 122-333 64-264 (597)
41 2z80_A TOLL-like receptor 2, v 99.9 1E-22 3.6E-27 195.1 12.5 229 127-392 71-317 (353)
42 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-23 3.7E-28 198.7 5.1 222 132-415 50-277 (313)
43 3rdv_A CAP-Gly domain-containi 99.9 9.5E-23 3.2E-27 144.1 8.4 70 7-79 1-70 (72)
44 2z62_A TOLL-like receptor 4, v 99.9 2.9E-22 9.9E-27 185.3 14.1 208 132-393 28-241 (276)
45 2z0w_A CAP-Gly domain-containi 99.9 5.1E-23 1.7E-27 153.7 7.1 87 5-94 7-93 (96)
46 1o6v_A Internalin A; bacterial 99.9 2.3E-22 7.7E-27 200.1 13.8 207 180-415 175-384 (466)
47 4ecn_A Leucine-rich repeat pro 99.9 2E-22 6.7E-27 212.8 13.8 253 122-389 505-819 (876)
48 3bz5_A Internalin-J, INLJ; leu 99.9 1.5E-21 5.1E-26 193.4 19.1 254 127-414 59-347 (457)
49 3t6q_A CD180 antigen; protein- 99.9 1E-22 3.5E-27 209.1 11.0 247 133-415 255-509 (606)
50 2ft3_A Biglycan; proteoglycan, 99.9 3.6E-22 1.2E-26 189.8 13.9 261 133-415 34-303 (332)
51 3o53_A Protein LRIM1, AGAP0063 99.9 2.9E-23 1E-27 196.0 5.0 233 134-415 12-246 (317)
52 2ft3_A Biglycan; proteoglycan, 99.9 2.9E-22 1E-26 190.4 11.6 247 127-415 73-329 (332)
53 3bz5_A Internalin-J, INLJ; leu 99.9 4.6E-21 1.6E-25 190.0 20.3 249 128-416 38-296 (457)
54 1lpl_A Hypothetical 25.4 kDa p 99.9 2.7E-22 9.2E-27 149.9 8.2 77 7-85 10-88 (95)
55 3rfs_A Internalin B, repeat mo 99.9 3.4E-21 1.2E-25 177.8 16.6 204 131-392 18-221 (272)
56 2z81_A CD282 antigen, TOLL-lik 99.9 1.8E-22 6.2E-27 204.8 7.5 165 126-297 44-211 (549)
57 4glp_A Monocyte differentiatio 99.9 2.7E-22 9.2E-27 188.8 8.1 210 130-391 89-309 (310)
58 1ziw_A TOLL-like receptor 3; i 99.9 2.6E-21 9E-26 201.4 16.3 272 127-415 324-618 (680)
59 1wwl_A Monocyte differentiatio 99.9 3.7E-23 1.3E-27 194.9 1.9 244 130-415 41-305 (312)
60 2cp2_A CLIP-115, KIAA0291; mic 99.9 1.1E-21 3.7E-26 146.0 8.8 73 6-81 16-88 (95)
61 2z80_A TOLL-like receptor 2, v 99.9 1.8E-21 6.1E-26 186.6 12.1 255 128-415 27-286 (353)
62 2cp3_A CLIP-115, KIAA0291; mic 99.9 2E-21 6.9E-26 141.5 9.2 70 7-79 6-75 (84)
63 1whh_A Clipr-59; microtubule b 99.9 1.7E-21 5.7E-26 146.5 8.8 76 7-85 24-99 (102)
64 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-20 4.7E-25 192.5 18.6 225 121-389 52-297 (622)
65 3vq2_A TLR4, TOLL-like recepto 99.9 3.6E-22 1.2E-26 205.1 6.9 208 155-392 349-561 (606)
66 2cp0_A Clipr-59 protein, clipr 99.9 1.6E-21 5.6E-26 145.0 8.5 71 7-80 15-85 (95)
67 2ca6_A RAN GTPase-activating p 99.8 3.6E-22 1.2E-26 193.7 5.7 254 120-391 20-318 (386)
68 2e3h_A Restin; CAP-Gly, cytopl 99.8 2.3E-21 7.9E-26 142.9 8.5 71 8-81 1-71 (90)
69 3g06_A SSPH2 (leucine-rich rep 99.8 1E-20 3.5E-25 193.4 16.4 232 131-415 39-293 (622)
70 2ast_B S-phase kinase-associat 99.8 5.8E-21 2E-25 181.5 13.4 235 125-416 61-305 (336)
71 1ixd_A Cylindromatosis tumour- 99.8 3.1E-21 1.1E-25 146.1 8.8 77 7-84 16-93 (104)
72 1ziw_A TOLL-like receptor 3; i 99.8 7.1E-21 2.4E-25 198.1 14.9 159 132-298 25-187 (680)
73 3rfs_A Internalin B, repeat mo 99.8 6.6E-21 2.3E-25 175.9 12.8 178 128-333 37-215 (272)
74 2z62_A TOLL-like receptor 4, v 99.8 3.4E-21 1.1E-25 178.1 10.7 218 136-415 11-233 (276)
75 2cow_A Kinesin-like protein KI 99.8 3.4E-21 1.1E-25 144.3 8.4 72 7-81 22-93 (100)
76 1whj_A 1700024K14RIK, riken cD 99.8 4.2E-21 1.4E-25 144.4 8.9 72 7-81 23-94 (102)
77 1h6u_A Internalin H; cell adhe 99.8 1.1E-20 3.6E-25 177.7 13.7 204 136-415 23-226 (308)
78 1txq_A Dynactin 1; protein com 99.8 4.2E-21 1.5E-25 142.8 8.6 72 7-80 11-82 (93)
79 3j0a_A TOLL-like receptor 5; m 99.8 4.4E-21 1.5E-25 204.3 12.4 239 127-391 285-541 (844)
80 1whk_A 1700024K14RIK, riken cD 99.8 3.2E-21 1.1E-25 142.5 7.6 72 7-80 11-82 (91)
81 1h6t_A Internalin B; cell adhe 99.8 2.2E-21 7.7E-26 180.8 8.1 188 136-391 28-215 (291)
82 2cp5_A Restin; microtubule bin 99.8 5.5E-21 1.9E-25 151.2 9.0 74 7-83 63-136 (141)
83 2coz_A CAP350, centrosome-asso 99.8 6.8E-21 2.3E-25 147.6 9.0 70 7-79 30-99 (122)
84 1whg_A Tubulin specific chaper 99.8 4.8E-21 1.6E-25 147.3 8.1 74 7-81 31-106 (113)
85 1jl5_A Outer protein YOPM; leu 99.8 7.1E-21 2.4E-25 188.4 11.6 220 128-390 149-371 (454)
86 2o6q_A Variable lymphocyte rec 99.8 1.7E-20 5.9E-25 172.9 13.3 198 156-415 16-214 (270)
87 3vq2_A TLR4, TOLL-like recepto 99.8 2.1E-21 7.3E-26 199.3 7.9 206 127-364 345-558 (606)
88 3j0a_A TOLL-like receptor 5; m 99.8 2.1E-21 7.3E-26 206.7 8.0 251 125-390 66-376 (844)
89 2z81_A CD282 antigen, TOLL-lik 99.8 2E-19 6.9E-24 182.3 20.8 229 123-392 242-513 (549)
90 3m19_A Variable lymphocyte rec 99.8 6.5E-20 2.2E-24 167.1 15.4 181 132-391 14-194 (251)
91 2coy_A Dynactin-1; microtubule 99.8 1.6E-20 5.4E-25 143.7 9.2 72 7-80 32-103 (112)
92 2z63_A TOLL-like receptor 4, v 99.8 5.5E-21 1.9E-25 194.7 8.8 211 130-393 323-535 (570)
93 3oja_A Leucine-rich immune mol 99.8 3.1E-21 1.1E-25 192.7 6.8 212 155-415 33-246 (487)
94 2xwt_C Thyrotropin receptor; s 99.8 1.1E-20 3.6E-25 171.0 9.6 196 133-387 32-237 (239)
95 1p9a_G Platelet glycoprotein I 99.8 2.9E-20 1E-24 173.1 12.8 194 155-414 9-203 (290)
96 1whl_A Cylindromatosis tumor s 99.8 1.5E-20 5.2E-25 141.0 7.8 74 7-81 6-88 (95)
97 4g8a_A TOLL-like receptor 4; l 99.8 2.1E-20 7.3E-25 192.4 11.6 123 278-415 441-576 (635)
98 2cp6_A Restin; microtubule bin 99.8 2.1E-20 7.1E-25 152.4 9.0 72 7-81 37-108 (172)
99 2z63_A TOLL-like receptor 4, v 99.8 8.1E-21 2.8E-25 193.4 8.2 159 127-292 47-210 (570)
100 2ca6_A RAN GTPase-activating p 99.8 7.7E-21 2.6E-25 184.4 7.5 252 119-387 47-341 (386)
101 1jl5_A Outer protein YOPM; leu 99.8 3.5E-19 1.2E-23 176.3 18.3 238 132-415 111-366 (454)
102 3m19_A Variable lymphocyte rec 99.8 2.3E-19 8E-24 163.4 14.8 167 121-296 26-193 (251)
103 1m9s_A Internalin B; cell inva 99.8 1.6E-20 5.6E-25 191.6 7.9 151 129-297 40-190 (605)
104 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.6E-19 5.6E-24 183.7 14.0 135 122-269 44-181 (562)
105 3goz_A Leucine-rich repeat-con 99.8 5.8E-21 2E-25 183.7 3.1 254 124-391 14-299 (362)
106 2xwt_C Thyrotropin receptor; s 99.8 4.5E-20 1.5E-24 166.9 8.5 203 144-415 23-235 (239)
107 2z7x_B TOLL-like receptor 1, v 99.8 7.5E-19 2.6E-23 177.0 18.3 207 131-392 246-484 (520)
108 4glp_A Monocyte differentiatio 99.8 1.2E-20 4.2E-25 177.5 4.7 201 156-415 91-303 (310)
109 1z7x_W Ribonuclease inhibitor; 99.8 2.7E-20 9.4E-25 184.5 6.4 277 122-415 46-350 (461)
110 3cvr_A Invasion plasmid antige 99.8 2.3E-18 8E-23 174.0 16.0 186 132-390 59-244 (571)
111 1h6t_A Internalin B; cell adhe 99.8 1.6E-18 5.6E-23 161.4 13.8 166 129-331 43-208 (291)
112 1z7x_W Ribonuclease inhibitor; 99.8 1E-19 3.5E-24 180.4 6.0 243 131-390 141-412 (461)
113 1m9s_A Internalin B; cell inva 99.8 3.7E-18 1.3E-22 174.2 15.3 216 131-417 20-235 (605)
114 1xeu_A Internalin C; cellular 99.8 1.5E-19 5.1E-24 165.9 4.3 164 130-331 17-180 (263)
115 3e6j_A Variable lymphocyte rec 99.8 1E-17 3.5E-22 150.4 15.8 178 185-416 22-200 (229)
116 2ast_B S-phase kinase-associat 99.8 7.5E-19 2.6E-23 166.8 8.3 226 158-415 49-281 (336)
117 3goz_A Leucine-rich repeat-con 99.7 1.2E-19 4.2E-24 174.4 1.0 266 136-415 2-293 (362)
118 4g8a_A TOLL-like receptor 4; l 99.7 4.7E-18 1.6E-22 174.8 12.6 168 123-299 19-190 (635)
119 4ezg_A Putative uncharacterize 99.7 9.3E-18 3.2E-22 147.0 11.7 154 129-297 41-196 (197)
120 1xeu_A Internalin C; cellular 99.7 4.9E-18 1.7E-22 155.8 9.5 152 127-297 36-187 (263)
121 3ogk_B Coronatine-insensitive 99.7 8E-19 2.7E-23 179.5 4.1 284 122-415 154-522 (592)
122 4ezg_A Putative uncharacterize 99.7 1.4E-17 4.9E-22 145.8 10.6 150 156-389 44-194 (197)
123 4ay9_X Follicle-stimulating ho 99.7 9.7E-18 3.3E-22 160.4 9.8 219 132-414 30-254 (350)
124 2v70_A SLIT-2, SLIT homolog 2 99.7 4.2E-17 1.4E-21 145.5 12.8 155 186-392 15-169 (220)
125 1whm_A Cylindromatosis tumor s 99.7 2.1E-17 7.1E-22 120.2 8.1 71 7-78 8-82 (92)
126 2v9t_B SLIT homolog 2 protein 99.7 7E-17 2.4E-21 144.0 13.2 136 206-392 33-168 (220)
127 2o6s_A Variable lymphocyte rec 99.7 2.9E-17 1E-21 145.0 10.1 151 135-295 10-161 (208)
128 2xot_A Amphoterin-induced prot 99.7 1.9E-17 6.6E-22 159.0 9.2 181 159-392 21-205 (361)
129 1dce_A Protein (RAB geranylger 99.7 1.1E-19 3.7E-24 184.4 -9.0 126 231-413 442-567 (567)
130 2v70_A SLIT-2, SLIT homolog 2 99.7 7.1E-17 2.4E-21 143.9 10.4 154 135-297 14-168 (220)
131 2v9t_B SLIT homolog 2 protein 99.7 7.4E-17 2.5E-21 143.8 10.2 153 135-297 14-167 (220)
132 4ay9_X Follicle-stimulating ho 99.7 1.8E-17 6E-22 158.6 6.0 177 113-297 34-217 (350)
133 3e6j_A Variable lymphocyte rec 99.7 1.3E-16 4.3E-21 143.2 11.2 153 134-297 21-174 (229)
134 2xot_A Amphoterin-induced prot 99.7 4.7E-17 1.6E-21 156.3 8.1 172 135-333 21-199 (361)
135 2o6s_A Variable lymphocyte rec 99.7 1.8E-15 6.3E-20 133.4 16.8 146 159-331 10-156 (208)
136 3ogk_B Coronatine-insensitive 99.7 1.3E-17 4.5E-22 170.5 2.7 252 155-414 163-444 (592)
137 3cvr_A Invasion plasmid antige 99.7 9E-16 3.1E-20 155.1 14.7 174 156-415 59-239 (571)
138 2p1m_B Transport inhibitor res 99.6 7.8E-16 2.7E-20 157.3 6.6 279 123-416 147-516 (594)
139 1dce_A Protein (RAB geranylger 99.6 1E-16 3.6E-21 162.4 -0.0 187 120-330 360-567 (567)
140 2ell_A Acidic leucine-rich nuc 99.6 1.3E-15 4.3E-20 129.7 6.6 137 156-297 24-162 (168)
141 2je0_A Acidic leucine-rich nuc 99.6 4.4E-15 1.5E-19 123.7 9.2 133 228-415 15-149 (149)
142 2p1m_B Transport inhibitor res 99.6 7.9E-16 2.7E-20 157.3 5.6 115 125-240 98-221 (594)
143 1a9n_A U2A', U2A'; complex (nu 99.6 6.7E-15 2.3E-19 126.3 10.5 133 228-416 17-150 (176)
144 2ell_A Acidic leucine-rich nuc 99.6 1E-14 3.5E-19 124.0 9.8 133 229-416 23-157 (168)
145 3sb4_A Hypothetical leucine ri 99.5 2.3E-14 7.8E-19 135.6 12.3 158 131-297 48-288 (329)
146 2je0_A Acidic leucine-rich nuc 99.5 4.3E-15 1.5E-19 123.7 5.9 130 156-291 17-149 (149)
147 1ds9_A Outer arm dynein; leuci 99.5 5.3E-17 1.8E-21 142.3 -7.3 172 174-417 10-185 (198)
148 4b8c_D Glucose-repressible alc 99.5 5.7E-15 1.9E-19 154.2 4.1 189 132-333 173-369 (727)
149 1w8a_A SLIT protein; signaling 99.5 3.1E-14 1.1E-18 123.9 7.0 129 135-296 11-140 (192)
150 1w8a_A SLIT protein; signaling 99.5 1E-13 3.5E-18 120.6 9.9 126 185-333 11-136 (192)
151 2wfh_A SLIT homolog 2 protein 99.5 9E-14 3.1E-18 121.1 9.1 126 135-270 13-139 (193)
152 2o6r_A Variable lymphocyte rec 99.5 4.3E-13 1.5E-17 114.9 12.8 131 208-392 10-140 (177)
153 1a9n_A U2A', U2A'; complex (nu 99.5 1.7E-14 6E-19 123.7 3.6 135 156-297 19-155 (176)
154 2wfh_A SLIT homolog 2 protein 99.5 4.4E-13 1.5E-17 116.7 12.0 124 185-333 13-136 (193)
155 2o6r_A Variable lymphocyte rec 99.4 8E-13 2.7E-17 113.3 11.0 129 135-296 10-138 (177)
156 1ds9_A Outer arm dynein; leuci 99.4 3.6E-15 1.2E-19 130.6 -5.7 144 126-297 12-155 (198)
157 3g39_A Variable lymphocyte rec 99.4 4.6E-12 1.6E-16 107.8 13.2 126 231-409 10-135 (170)
158 3sb4_A Hypothetical leucine ri 99.4 2.8E-14 9.7E-19 135.0 -1.2 222 130-412 23-327 (329)
159 4b8c_D Glucose-repressible alc 99.4 1E-12 3.5E-17 137.2 9.9 113 223-389 217-329 (727)
160 2r9u_A Variable lymphocyte rec 99.3 1.5E-11 5.1E-16 105.1 13.5 108 232-392 14-121 (174)
161 3un9_A NLR family member X1; l 99.3 8.2E-14 2.8E-18 133.9 -1.2 164 155-331 71-247 (372)
162 3un9_A NLR family member X1; l 99.3 5.6E-13 1.9E-17 128.0 2.8 168 130-298 70-255 (372)
163 3g39_A Variable lymphocyte rec 99.2 2.4E-11 8.1E-16 103.4 9.1 104 158-295 11-115 (170)
164 2r9u_A Variable lymphocyte rec 99.2 3.2E-11 1.1E-15 103.0 9.1 104 159-296 15-119 (174)
165 4fdw_A Leucine rich hypothetic 99.0 8.8E-10 3E-14 106.8 11.6 168 133-331 158-331 (401)
166 4fdw_A Leucine rich hypothetic 99.0 7.8E-10 2.7E-14 107.1 11.1 221 128-389 132-358 (401)
167 2ifg_A High affinity nerve gro 99.0 2E-09 6.8E-14 102.2 11.2 106 234-392 12-119 (347)
168 2ifg_A High affinity nerve gro 98.9 3.8E-10 1.3E-14 107.3 4.7 104 160-272 12-118 (347)
169 3rw6_A Nuclear RNA export fact 98.9 4.2E-10 1.4E-14 102.1 3.6 112 262-418 148-263 (267)
170 2ra8_A Uncharacterized protein 98.9 2.3E-09 7.8E-14 102.2 8.4 183 131-331 106-315 (362)
171 1io0_A Tropomodulin; LRR prote 98.8 5E-09 1.7E-13 90.2 7.5 121 122-243 26-164 (185)
172 2ra8_A Uncharacterized protein 98.6 4E-08 1.4E-12 93.5 7.7 137 155-296 171-321 (362)
173 1io0_A Tropomodulin; LRR prote 98.6 3.8E-08 1.3E-12 84.6 6.3 123 175-297 29-166 (185)
174 3rw6_A Nuclear RNA export fact 98.6 1.8E-08 6.2E-13 91.3 3.1 82 154-236 168-257 (267)
175 3e4g_A ATP synthase subunit S, 98.2 4.4E-07 1.5E-11 76.5 2.4 107 283-410 62-171 (176)
176 4fs7_A Uncharacterized protein 98.2 1.5E-06 5.3E-11 83.8 6.0 23 363-386 354-376 (394)
177 4fs7_A Uncharacterized protein 98.1 4.6E-06 1.6E-10 80.4 8.0 218 126-413 156-373 (394)
178 1pgv_A TMD-1, tropomodulin TMD 98.0 1.4E-05 4.6E-10 68.7 7.0 116 124-240 33-167 (197)
179 3e4g_A ATP synthase subunit S, 97.9 4E-06 1.4E-10 70.7 3.4 82 206-292 62-149 (176)
180 4gt6_A Cell surface protein; l 97.9 3.2E-05 1.1E-09 74.4 9.7 221 127-387 109-368 (394)
181 1pgv_A TMD-1, tropomodulin TMD 97.7 2.2E-05 7.5E-10 67.4 3.8 128 221-389 32-170 (197)
182 4gt6_A Cell surface protein; l 97.6 0.00016 5.4E-09 69.5 8.2 18 371-388 373-390 (394)
183 4h09_A Hypothetical leucine ri 97.1 0.0018 6.3E-08 61.5 10.0 105 202-331 214-318 (379)
184 4h09_A Hypothetical leucine ri 96.8 0.0037 1.3E-07 59.4 9.1 128 178-331 213-341 (379)
185 3rfe_A Platelet glycoprotein I 96.7 0.003 1E-07 50.3 6.6 59 285-392 11-71 (130)
186 3rfe_A Platelet glycoprotein I 96.6 0.0037 1.3E-07 49.7 6.2 56 233-295 11-68 (130)
187 2vxe_A CG10686-PA; EDC3, CAR-1 60.9 9.5 0.00032 27.3 3.8 46 7-67 8-53 (88)
188 2fb7_A SM-like protein, LSM-14 53.9 7.3 0.00025 28.2 2.3 23 7-33 14-36 (95)
189 2zzd_A Thiocyanate hydrolase s 38.2 11 0.00037 29.0 1.2 34 6-40 34-67 (126)
190 3dkm_A E3 ubiquitin-protein li 34.8 66 0.0022 23.0 4.7 34 9-47 22-64 (89)
191 2dk3_A E3 ubiquitin-protein li 28.4 73 0.0025 22.6 4.0 37 7-48 14-59 (86)
192 2lz0_A Uncharacterized protein 27.9 69 0.0024 23.3 4.1 47 241-292 7-53 (100)
193 1ugp_B NitrIle hydratase beta 27.3 23 0.0008 30.3 1.6 34 6-40 136-169 (226)
194 3hht_B NitrIle hydratase beta 26.3 24 0.00081 30.4 1.5 35 5-40 138-172 (229)
195 3qyh_B CO-type nitrIle hydrata 26.2 24 0.00082 30.1 1.4 35 5-40 127-161 (219)
196 3udc_A Small-conductance mecha 23.3 63 0.0022 28.7 3.8 22 7-31 127-148 (285)
197 2qqr_A JMJC domain-containing 21.3 59 0.002 24.6 2.6 40 6-49 3-43 (118)
198 3a8g_B NitrIle hydratase subun 21.1 27 0.00092 29.6 0.8 33 6-39 120-152 (212)
199 2vv5_A MSCS, small-conductance 21.1 61 0.0021 28.8 3.2 22 7-31 128-149 (286)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=7.2e-24 Score=202.62 Aligned_cols=252 Identities=19% Similarity=0.211 Sum_probs=127.4
Q ss_pred HhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCc
Q 014792 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (418)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L 207 (418)
+..+++|++|++++|.++..++ +.. +++|++|++++|.+..++ .+..+++|++|++++|.+...++ +..+++|
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~-~~~-l~~L~~L~L~~n~i~~~~----~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L 134 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP-LSN-LVKLTNLYIGTNKITDIS----ALQNLTNLRELYLNEDNISDISP-LANLTKM 134 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTT-CTTCCEEECCSSCCCCCG----GGTTCTTCSEEECTTSCCCCCGG-GTTCTTC
T ss_pred hhhcCCccEEEccCCccccchh-hhc-CCcCCEEEccCCcccCch----HHcCCCcCCEEECcCCcccCchh-hccCCce
Confidence 4455555555555555555443 332 255555555555555421 24555555555555555554332 4444444
Q ss_pred cEEEecC-----------------------CCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeC
Q 014792 208 RILVLNC-----------------------TGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNL 264 (418)
Q Consensus 208 ~~L~L~~-----------------------n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 264 (418)
++|++++ |.+... +. +..+++|++|++++|.+.++++ +..+++|+.|++
T Consensus 135 ~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~-~~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L~l 206 (347)
T 4fmz_A 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV--TP-IANLTDLYSLSLNYNQIEDISP-----LASLTSLHYFTA 206 (347)
T ss_dssp CEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC--GG-GGGCTTCSEEECTTSCCCCCGG-----GGGCTTCCEEEC
T ss_pred eEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc--hh-hccCCCCCEEEccCCccccccc-----ccCCCccceeec
Confidence 5555444 444321 11 3444555555555555444332 344455555555
Q ss_pred CCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCc---cccCCCCCcEEEccCC--CCCCCC
Q 014792 265 EDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEE---SYLPFQNLCCLLLGNS--KKLPTS 339 (418)
Q Consensus 265 ~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~L~~L~L~~n--~~i~~~ 339 (418)
++|.+.+.+. +..+++|++|++++|.++.+.+......++.++++.+... .+..+++|+.|++++| ..++..
T Consensus 207 ~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 283 (347)
T 4fmz_A 207 YVNQITDITP---VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVL 283 (347)
T ss_dssp CSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred ccCCCCCCch---hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhh
Confidence 5555555432 4555666666666666666543223334445555554322 2344556666666655 122111
Q ss_pred CccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCc
Q 014792 340 SHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 414 (418)
Q Consensus 340 ~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 414 (418)
.....|+.|+++ +|.+...+. ..+..+++|++|++++|++++.. + ++.+++|+.|+++
T Consensus 284 -------~~l~~L~~L~L~-~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~----~----~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 284 -------NNLSQLNSLFLN-NNQLGNEDM-EVIGGLTNLTTLFLSQNHITDIR----P----LASLSKMDSADFA 341 (347)
T ss_dssp -------GGCTTCSEEECC-SSCCCGGGH-HHHHTCTTCSEEECCSSSCCCCG----G----GGGCTTCSEESSS
T ss_pred -------cCCCCCCEEECc-CCcCCCcCh-hHhhccccCCEEEccCCcccccc----C----hhhhhccceeehh
Confidence 112235555665 555544432 34566666777777777666321 1 4566777777665
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=1.5e-24 Score=205.87 Aligned_cols=230 Identities=16% Similarity=0.161 Sum_probs=173.4
Q ss_pred hhHHHHHh--cccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC
Q 014792 122 DKIQDKFS--KFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT 199 (418)
Q Consensus 122 ~~l~~~~~--~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~ 199 (418)
..++..+. ....++.|+|++|.+..+++.+..+ ++|++|+|++|.+.. +|..++.+++|++|++++|+++..++
T Consensus 69 ~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l~~l-~~L~~L~L~~n~l~~---lp~~~~~l~~L~~L~Ls~n~l~~lp~ 144 (328)
T 4fcg_A 69 KATADLLEDATQPGRVALELRSVPLPQFPDQAFRL-SHLQHMTIDAAGLME---LPDTMQQFAGLETLTLARNPLRALPA 144 (328)
T ss_dssp HHHHHHHHHHTSTTCCEEEEESSCCSSCCSCGGGG-TTCSEEEEESSCCCC---CCSCGGGGTTCSEEEEESCCCCCCCG
T ss_pred hhhHHHHhcccccceeEEEccCCCchhcChhhhhC-CCCCEEECCCCCccc---hhHHHhccCCCCEEECCCCccccCcH
Confidence 34444433 4588999999999999888888875 999999999999984 57778999999999999999996666
Q ss_pred CCCCCCCccEEEecCCCCCHHHHHHHHh---------cCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCC
Q 014792 200 GLPQLKSIRILVLNCTGVNWMQVEILKH---------SLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIA 270 (418)
Q Consensus 200 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~---------~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 270 (418)
.+..+++|++|++++|.+.. .++..+. .+++|++|++++|.++.++. .++.+++|++|+|++|.+.
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~-~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~----~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELT-ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA----SIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCC-CCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG----GGGGCTTCCEEEEESSCCC
T ss_pred HHhcCcCCCEEECCCCCCcc-ccChhHhhccchhhhccCCCCCEEECcCCCcCcchH----hhcCCCCCCEEEccCCCCC
Confidence 78899999999999976554 2333323 48999999999999986654 4788999999999999999
Q ss_pred ChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhh
Q 014792 271 EWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLI 350 (418)
Q Consensus 271 ~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~ 350 (418)
+++. .+..+++|+.|++++|.+.+..+.. +..+++|+.|+|++|
T Consensus 220 ~l~~--~l~~l~~L~~L~Ls~n~~~~~~p~~-----------------~~~l~~L~~L~L~~n----------------- 263 (328)
T 4fcg_A 220 ALGP--AIHHLPKLEELDLRGCTALRNYPPI-----------------FGGRAPLKRLILKDC----------------- 263 (328)
T ss_dssp CCCG--GGGGCTTCCEEECTTCTTCCBCCCC-----------------TTCCCCCCEEECTTC-----------------
T ss_pred cCch--hhccCCCCCEEECcCCcchhhhHHH-----------------hcCCCCCCEEECCCC-----------------
Confidence 8764 5888999999999999887764333 678899999999933
Q ss_pred hhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCc
Q 014792 351 FAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 414 (418)
Q Consensus 351 ~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 414 (418)
+.++.+| ..+..+++|++|+|++|++.+.. +. .++++++|+.++++
T Consensus 264 ----------~~~~~~p--~~~~~l~~L~~L~L~~n~~~~~i----P~--~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 264 ----------SNLLTLP--LDIHRLTQLEKLDLRGCVNLSRL----PS--LIAQLPANCIILVP 309 (328)
T ss_dssp ----------TTCCBCC--TTGGGCTTCCEEECTTCTTCCCC----CG--GGGGSCTTCEEECC
T ss_pred ----------Cchhhcc--hhhhcCCCCCEEeCCCCCchhhc----cH--HHhhccCceEEeCC
Confidence 2234444 24566666666666666665332 21 24556666666543
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.1e-23 Score=201.31 Aligned_cols=239 Identities=20% Similarity=0.230 Sum_probs=174.6
Q ss_pred HHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCC
Q 014792 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206 (418)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~ 206 (418)
.+..+++|++|++++|.+...++ +.. +++|++|++++|.... . +..+..+++|++|++++|.+....+ +..+++
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~~~-~~~-l~~L~~L~l~~n~~~~--~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~ 178 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDISP-LAN-LTKMYSLNLGANHNLS--D-LSPLSNMTGLNYLTVTESKVKDVTP-IANLTD 178 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCCGG-GTT-CTTCCEEECTTCTTCC--C-CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTT
T ss_pred HHcCCCcCCEEECcCCcccCchh-hcc-CCceeEEECCCCCCcc--c-ccchhhCCCCcEEEecCCCcCCchh-hccCCC
Confidence 35666666666666666666543 333 3667777777664332 1 1225677777777777777765543 778899
Q ss_pred ccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCE
Q 014792 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (418)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~ 286 (418)
|++|++++|.+.. ++. +..+++|+.|++++|.+....+ +..+++|+.|++++|.+.+.+. +..+++|++
T Consensus 179 L~~L~l~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~ 247 (347)
T 4fmz_A 179 LYSLSLNYNQIED--ISP-LASLTSLHYFTAYVNQITDITP-----VANMTRLNSLKIGNNKITDLSP---LANLSQLTW 247 (347)
T ss_dssp CSEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCE
T ss_pred CCEEEccCCcccc--ccc-ccCCCccceeecccCCCCCCch-----hhcCCcCCEEEccCCccCCCcc---hhcCCCCCE
Confidence 9999999999874 333 5789999999999999987653 6778999999999999998764 788999999
Q ss_pred EecCCCCCCcccCCCCCchhhhhccccccCc---cccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCc
Q 014792 287 LYLNKNNLNRIYYPNNDTIHELVSAHESHEE---SYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMI 363 (418)
Q Consensus 287 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i 363 (418)
|++++|.++++..-.....++.++++.+... .+..+++|+.|++++|..-... +....-...|+.|+++ +|.+
T Consensus 248 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~-~n~l 323 (347)
T 4fmz_A 248 LEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNED---MEVIGGLTNLTTLFLS-QNHI 323 (347)
T ss_dssp EECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGG---HHHHHTCTTCSEEECC-SSSC
T ss_pred EECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcC---hhHhhccccCCEEEcc-CCcc
Confidence 9999999998754444567788888887544 4567899999999988321110 0111112457888888 7888
Q ss_pred CCCcccccccCCCCCceEEcCCCCCC
Q 014792 364 EDLASIDSLDSFPKLMDIRLSENPVS 389 (418)
Q Consensus 364 ~~~~~~~~l~~~~~L~~L~l~~N~l~ 389 (418)
..++ .+..+++|++|++++|+++
T Consensus 324 ~~~~---~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 324 TDIR---PLASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCG---GGGGCTTCSEESSSCC---
T ss_pred cccc---Chhhhhccceeehhhhccc
Confidence 8886 3888999999999999986
No 4
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=1.3e-23 Score=195.33 Aligned_cols=217 Identities=23% Similarity=0.191 Sum_probs=178.9
Q ss_pred hhhHHHHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCC-CCCccC
Q 014792 121 KDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNL-MSKEVT 199 (418)
Q Consensus 121 ~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~-l~~~~~ 199 (418)
...+|.. -.++|++|++++|.++.+++.....+++|++|+|++|.+..+ .+..+..+++|++|++++|. +....+
T Consensus 23 l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~l~~~~~ 98 (285)
T 1ozn_A 23 LQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI--DAAAFTGLALLEQLDLSDNAQLRSVDP 98 (285)
T ss_dssp CSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred cccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCcccee--CHhhcCCccCCCEEeCCCCCCccccCH
Confidence 3444432 356899999999999988764334459999999999999863 26778899999999999997 777645
Q ss_pred -CCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhc
Q 014792 200 -GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKL 278 (418)
Q Consensus 200 -~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l 278 (418)
.+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++.+++. .++.+++|++|+|++|.+++++. ..+
T Consensus 99 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~~ 173 (285)
T 1ozn_A 99 ATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDD---TFRDLGNLTHLFLHGNRISSVPE-RAF 173 (285)
T ss_dssp TTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCEECT-TTT
T ss_pred HHhcCCcCCCEEECCCCcCCE-ECHhHhhCCcCCCEEECCCCcccccCHh---HhccCCCccEEECCCCcccccCH-HHh
Confidence 68889999999999998875 2345567889999999999999987764 47788999999999999998765 568
Q ss_pred CCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCC
Q 014792 279 CQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHAS 358 (418)
Q Consensus 279 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~ 358 (418)
..+++|+.|++++|.++++.+.. +..+++|+.|+++
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~~~-----------------~~~l~~L~~L~l~--------------------------- 209 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAHVHPHA-----------------FRDLGRLMTLYLF--------------------------- 209 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTT-----------------TTTCTTCCEEECC---------------------------
T ss_pred cCccccCEEECCCCcccccCHhH-----------------ccCcccccEeeCC---------------------------
Confidence 88999999999999998875333 6788999999999
Q ss_pred CCCCcCCCcccccccCCCCCceEEcCCCCCCCCC
Q 014792 359 GNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 392 (418)
Q Consensus 359 ~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~ 392 (418)
+|.+..++. ..+..+++|++|++++|++..++
T Consensus 210 -~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 210 -ANNLSALPT-EALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp -SSCCSCCCH-HHHTTCTTCCEEECCSSCEECSG
T ss_pred -CCcCCcCCH-HHcccCcccCEEeccCCCccCCC
Confidence 999988874 46889999999999999999765
No 5
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=1e-24 Score=204.88 Aligned_cols=233 Identities=21% Similarity=0.154 Sum_probs=147.3
Q ss_pred cccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEE
Q 014792 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILV 211 (418)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~ 211 (418)
++|++|++++|.++.++..+...+++|++|+|++|.+.....++..+..+++|++|++++|.+...++.+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 46777777777777666544333477777777777776432223445567777777777777766555566777777777
Q ss_pred ecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCC-hhhhhhcCCCCCCCEEecC
Q 014792 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAE-WSEILKLCQIRSLEQLYLN 290 (418)
Q Consensus 212 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~l~~l~~l~~L~~L~l~ 290 (418)
+++|.+........+..+++|++|++++|.+....+. .+..+++|++|++++|.+.+ ..+ ..+..+++|+.|+++
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLS 183 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT---TTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECT
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchh---hcccCcCCCEEECCCCccccccch-hHHhhCcCCCEEECC
Confidence 7777665322213346677777777777777665543 45666777777777777664 111 346667777777777
Q ss_pred CCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCC--CCCCCCccchhhhhhhhhhhccCCCCCCcCCCcc
Q 014792 291 KNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSK--KLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLAS 368 (418)
Q Consensus 291 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~--~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~ 368 (418)
+|.++++.+.. +..+++|+.|++++|. .++... + .....|+.|+++ +|.+.....
T Consensus 184 ~n~l~~~~~~~-----------------~~~l~~L~~L~L~~N~l~~~~~~~-~----~~l~~L~~L~L~-~N~l~~~~~ 240 (306)
T 2z66_A 184 QCQLEQLSPTA-----------------FNSLSSLQVLNMSHNNFFSLDTFP-Y----KCLNSLQVLDYS-LNHIMTSKK 240 (306)
T ss_dssp TSCCCEECTTT-----------------TTTCTTCCEEECTTSCCSBCCSGG-G----TTCTTCCEEECT-TSCCCBCSS
T ss_pred CCCcCCcCHHH-----------------hcCCCCCCEEECCCCccCccChhh-c----cCcccCCEeECC-CCCCcccCH
Confidence 77777663222 4556666666666662 222210 0 111235555565 888866643
Q ss_pred cccccCCC-CCceEEcCCCCCCCCC
Q 014792 369 IDSLDSFP-KLMDIRLSENPVSDPG 392 (418)
Q Consensus 369 ~~~l~~~~-~L~~L~l~~N~l~~~~ 392 (418)
..+..++ +|++|++++|++..++
T Consensus 241 -~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 241 -QELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp -SSCCCCCTTCCEEECTTCCEECSG
T ss_pred -HHHHhhhccCCEEEccCCCeeccc
Confidence 4677775 8999999999998765
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=4.3e-24 Score=207.61 Aligned_cols=244 Identities=19% Similarity=0.144 Sum_probs=137.2
Q ss_pred HHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCC
Q 014792 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLK 205 (418)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~ 205 (418)
.+..+++|++|++++|.+...++.....+++|++|+|++|.+..++ +..+..+++|++|++++|++...++ .+..++
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 165 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 165 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCT
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCC--HHHhcCCCCCcEEECCCCccCccChhhccCCC
Confidence 4566666677777766666665533233366777777777666432 2334666677777777776666554 366666
Q ss_pred CccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCC--C-----------CccCCCCCccEEeCCCCCCCCh
Q 014792 206 SIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVS--S-----------PIVQGFDNLQLLNLEDNCIAEW 272 (418)
Q Consensus 206 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~-----------~~~~~l~~L~~L~L~~n~l~~~ 272 (418)
+|++|++++|.++... +..+++|++|++++|.+..+.... . ......++|+.|++++|.+.+.
T Consensus 166 ~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~ 241 (390)
T 3o6n_A 166 SLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT 241 (390)
T ss_dssp TCCEEECCSSCCSBCC----GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC
T ss_pred CCCEEECCCCcCCccc----cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc
Confidence 7777777776665321 234444444444444433321100 0 0001234677788888877765
Q ss_pred hhhhhcCCCCCCCEEecCCCCCCcccCCCC--CchhhhhccccccCcc----ccCCCCCcEEEccCCC--CCCCCCccch
Q 014792 273 SEILKLCQIRSLEQLYLNKNNLNRIYYPNN--DTIHELVSAHESHEES----YLPFQNLCCLLLGNSK--KLPTSSHVSF 344 (418)
Q Consensus 273 ~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~~~~~~~~~~~~----~~~l~~L~~L~L~~n~--~i~~~~~~~~ 344 (418)
+ .+..+++|++|++++|.++++.+... ...++.++++.+.... ...+++|+.|+|++|. .+|..
T Consensus 242 ~---~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----- 313 (390)
T 3o6n_A 242 A---WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN----- 313 (390)
T ss_dssp G---GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGG-----
T ss_pred H---HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCcc-----
Confidence 3 46778888999999988887743321 2334445555554322 2345667777776662 22211
Q ss_pred hhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCC
Q 014792 345 VVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 390 (418)
Q Consensus 345 l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~ 390 (418)
......|+.|+++ +|.+..++ +..+++|++|++++|++.+
T Consensus 314 -~~~l~~L~~L~L~-~N~i~~~~----~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 314 -QPQFDRLENLYLD-HNSIVTLK----LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp -HHHHTTCSEEECC-SSCCCCCC----CCTTCCCSEEECCSSCEEH
T ss_pred -ccccCcCCEEECC-CCccceeC----chhhccCCEEEcCCCCccc
Confidence 1122345566665 56665553 5556666677777776653
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=2.9e-24 Score=214.33 Aligned_cols=264 Identities=19% Similarity=0.172 Sum_probs=146.1
Q ss_pred cccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCCCccEE
Q 014792 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRIL 210 (418)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L 210 (418)
++++.|+|++|.++.+++.....+++|++|+|++|.+..+ .|..+..+++|++|+|++|+++..++ .+..+++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV--EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEe--ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 3456666666666655442222236666666666666542 24455666666666666666665544 24556666666
Q ss_pred EecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecC
Q 014792 211 VLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLN 290 (418)
Q Consensus 211 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~ 290 (418)
++++|.+.. ..+..+..+++|++|++++|.+..+.+. .+..+++|+.|+|++|.+.+.+. ..+..+++|+.|+++
T Consensus 110 ~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 110 DISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHR---AFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLR 184 (477)
T ss_dssp ECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTT---SSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEE
T ss_pred ECCCCcccc-CChhHccccccCCEEECCCCccceeChh---hccCCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCC
Confidence 666665553 1233335556666666666666555433 35555666666666666665543 345556666666666
Q ss_pred CCCCCcccCCCCC--chhhhhcccccc-----CccccCCCCCcEEEccCC--CCCCCCCccchhhhhhhhhhhccCCCCC
Q 014792 291 KNNLNRIYYPNND--TIHELVSAHESH-----EESYLPFQNLCCLLLGNS--KKLPTSSHVSFVVYFLIFAFSLHASGNN 361 (418)
Q Consensus 291 ~n~l~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~l~~L~~L~L~~n--~~i~~~~~~~~l~~~~~~l~~l~~~~~n 361 (418)
+|.++.+...... ..++.++++.+. ........+|+.|++++| +.+|.. ...-...|+.|+++ +|
T Consensus 185 ~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~Ls-~n 258 (477)
T 2id5_A 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYL-----AVRHLVYLRFLNLS-YN 258 (477)
T ss_dssp SCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHH-----HHTTCTTCCEEECC-SS
T ss_pred CCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHH-----HhcCccccCeeECC-CC
Confidence 6666555322110 112222222211 011222346777777766 222211 01112346777777 77
Q ss_pred CcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 362 MIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 362 ~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
.+..++. ..+..+++|++|+|++|.+..... ..++.+++|+.|+++.
T Consensus 259 ~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 259 PISTIEG-SMLHELLRLQEIQLVGGQLAVVEP------YAFRGLNYLRVLNVSG 305 (477)
T ss_dssp CCCEECT-TSCTTCTTCCEEECCSSCCSEECT------TTBTTCTTCCEEECCS
T ss_pred cCCccCh-hhccccccCCEEECCCCccceECH------HHhcCcccCCEEECCC
Confidence 7777654 467888889999999988874321 1356789999998874
No 8
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=3.1e-23 Score=193.30 Aligned_cols=206 Identities=23% Similarity=0.194 Sum_probs=179.3
Q ss_pred HhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCc
Q 014792 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (418)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L 207 (418)
++++++++++++++++++.++..+. +++++|+|++|.+..+. +..+..+++|++|++++|.++..++. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFS--LATLMPYTRLTQLNLDRAELTKLQVD-GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEE--GGGGTTCTTCCEEECTTSCCCEEECC-SCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCccC--HHHhhcCCCCCEEECCCCccCcccCC-CCCCcC
Confidence 4578889999999999999887653 78999999999999743 57789999999999999999976544 789999
Q ss_pred cEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEE
Q 014792 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287 (418)
Q Consensus 208 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L 287 (418)
++|++++|.+. .++..+..+++|++|++++|+++.+++. .+..+++|++|+|++|.+..+++ ..+..+++|+.|
T Consensus 80 ~~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~---~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L 153 (290)
T 1p9a_G 80 GTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLG---ALRGLGELQELYLKGNELKTLPP-GLLTPTPKLEKL 153 (290)
T ss_dssp CEEECCSSCCS--SCCCCTTTCTTCCEEECCSSCCCCCCSS---TTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEE
T ss_pred CEEECCCCcCC--cCchhhccCCCCCEEECCCCcCcccCHH---HHcCCCCCCEEECCCCCCCccCh-hhcccccCCCEE
Confidence 99999999988 4566667899999999999999988765 58889999999999999998875 567889999999
Q ss_pred ecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCc
Q 014792 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLA 367 (418)
Q Consensus 288 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~ 367 (418)
++++|+|+.+... . +..+++|+.|+|+ +|.+..+|
T Consensus 154 ~L~~N~l~~l~~~-~----------------~~~l~~L~~L~L~----------------------------~N~l~~ip 188 (290)
T 1p9a_G 154 SLANNNLTELPAG-L----------------LNGLENLDTLLLQ----------------------------ENSLYTIP 188 (290)
T ss_dssp ECTTSCCSCCCTT-T----------------TTTCTTCCEEECC----------------------------SSCCCCCC
T ss_pred ECCCCcCCccCHH-H----------------hcCcCCCCEEECC----------------------------CCcCCccC
Confidence 9999999987322 1 5778999999999 99999998
Q ss_pred ccccccCCCCCceEEcCCCCCCCCC
Q 014792 368 SIDSLDSFPKLMDIRLSENPVSDPG 392 (418)
Q Consensus 368 ~~~~l~~~~~L~~L~l~~N~l~~~~ 392 (418)
..+..+++|+.|+|++||+.+++
T Consensus 189 --~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 189 --KGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp --TTTTTTCCCSEEECCSCCBCCSG
T ss_pred --hhhcccccCCeEEeCCCCccCcC
Confidence 46778889999999999999876
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=2.6e-25 Score=209.80 Aligned_cols=228 Identities=18% Similarity=0.180 Sum_probs=167.8
Q ss_pred hHHHHHhcccccceecccC-cCcCCCCC-chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-
Q 014792 123 KIQDKFSKFEELTSAALPY-LGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT- 199 (418)
Q Consensus 123 ~l~~~~~~l~~L~~L~L~~-~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~- 199 (418)
.+|..+.++++|++|++++ |.+.+..+ .+..+ ++|++|+|++|.+.+ .+|..+..+++|++|++++|.+.+..+
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 143 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSG--AIPDFLSQIKTLVTLDFSYNALSGTLPP 143 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC-TTCSEEEEEEECCEE--ECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcC-CCCCEEECcCCeeCC--cCCHHHhCCCCCCEEeCCCCccCCcCCh
Confidence 4667788889999999984 77775555 55554 899999999998875 457778889999999999998886555
Q ss_pred CCCCCCCccEEEecCCCCCHHHHHHHHhcCC-cccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhc
Q 014792 200 GLPQLKSIRILVLNCTGVNWMQVEILKHSLP-ALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKL 278 (418)
Q Consensus 200 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l 278 (418)
.+..+++|++|++++|.++. .++..+..++ +|++|++++|.+++..+. .+..++ |+.|++++|.+.+..+ ..+
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~~L~~L~L~~N~l~~~~~~---~~~~l~-L~~L~Ls~N~l~~~~~-~~~ 217 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISG-AIPDSYGSFSKLFTSMTISRNRLTGKIPP---TFANLN-LAFVDLSRNMLEGDAS-VLF 217 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEE-ECCGGGGCCCTTCCEEECCSSEEEEECCG---GGGGCC-CSEEECCSSEEEECCG-GGC
T ss_pred HHhcCCCCCeEECcCCcccC-cCCHHHhhhhhcCcEEECcCCeeeccCCh---HHhCCc-ccEEECcCCcccCcCC-HHH
Confidence 67888899999999988874 3444556776 889999999988755443 466665 9999999998876544 567
Q ss_pred CCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCC
Q 014792 279 CQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHAS 358 (418)
Q Consensus 279 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~ 358 (418)
..+++|+.|++++|.++...+. +..+++|+.|+|+
T Consensus 218 ~~l~~L~~L~L~~N~l~~~~~~------------------~~~l~~L~~L~Ls--------------------------- 252 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNSLAFDLGK------------------VGLSKNLNGLDLR--------------------------- 252 (313)
T ss_dssp CTTSCCSEEECCSSEECCBGGG------------------CCCCTTCCEEECC---------------------------
T ss_pred hcCCCCCEEECCCCceeeecCc------------------ccccCCCCEEECc---------------------------
Confidence 8888999999999988765321 4567888888888
Q ss_pred CCCCcC-CCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCc
Q 014792 359 GNNMIE-DLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 414 (418)
Q Consensus 359 ~~n~i~-~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 414 (418)
+|.+. .+| ..+..+++|++|++++|++.+.. +. .+.+++|+.|+++
T Consensus 253 -~N~l~~~~p--~~l~~l~~L~~L~Ls~N~l~~~i----p~---~~~l~~L~~l~l~ 299 (313)
T 1ogq_A 253 -NNRIYGTLP--QGLTQLKFLHSLNVSFNNLCGEI----PQ---GGNLQRFDVSAYA 299 (313)
T ss_dssp -SSCCEECCC--GGGGGCTTCCEEECCSSEEEEEC----CC---STTGGGSCGGGTC
T ss_pred -CCcccCcCC--hHHhcCcCCCEEECcCCcccccC----CC---CccccccChHHhc
Confidence 77765 444 35677777777777777776322 11 1456666666554
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=6.2e-24 Score=219.31 Aligned_cols=270 Identities=15% Similarity=0.146 Sum_probs=192.3
Q ss_pred HHHHHh--cccccceecccCcCcCCCCC-chhhhcCCccEEEcCCCC-CCChHHHHHHhhcC------CCCCEEEcCCCC
Q 014792 124 IQDKFS--KFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNL-LSDWKDIGAFGEQL------PALAVLNLSNNL 193 (418)
Q Consensus 124 l~~~~~--~l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~-l~~~~~l~~~~~~l------~~L~~L~Ls~n~ 193 (418)
+|+.++ ++++|++|++++|.+.+..+ .+..+ ++|++|+|++|. +++ ..+|..++.+ ++|++|++++|+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~n~~l~~-~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL-PEMQLINVACNRGISG-EQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC-SSCCEEECTTCTTSCH-HHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcC-CCCCEEECcCCCCCcc-ccchHHHHhhhccccCCCCCEEECCCCc
Confidence 888888 99999999999999877655 56654 999999999998 763 1478877776 999999999999
Q ss_pred CCCccC--CCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCC-ccEEeCCCCCCC
Q 014792 194 MSKEVT--GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDN-LQLLNLEDNCIA 270 (418)
Q Consensus 194 l~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~-L~~L~L~~n~l~ 270 (418)
++..+. .+..+++|++|++++|.+.+ .++ .+..+++|++|++++|.++.++.. +..+++ |++|++++|.++
T Consensus 317 l~~ip~~~~l~~l~~L~~L~L~~N~l~g-~ip-~~~~l~~L~~L~L~~N~l~~lp~~----l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 317 LKTFPVETSLQKMKKLGMLECLYNQLEG-KLP-AFGSEIKLASLNLAYNQITEIPAN----FCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp CSSCCCHHHHTTCTTCCEEECCSCCCEE-ECC-CCEEEEEESEEECCSSEEEECCTT----SEEECTTCCEEECCSSCCS
T ss_pred CCccCchhhhccCCCCCEEeCcCCcCcc-chh-hhCCCCCCCEEECCCCccccccHh----hhhhcccCcEEEccCCcCc
Confidence 996665 58899999999999999874 344 557888999999999998866543 777888 999999999988
Q ss_pred ChhhhhhcCC--CCCCCEEecCCCCCCcccCCCCC---------chhhhhccccccCcccc-----CCCCCcEEEccCC-
Q 014792 271 EWSEILKLCQ--IRSLEQLYLNKNNLNRIYYPNND---------TIHELVSAHESHEESYL-----PFQNLCCLLLGNS- 333 (418)
Q Consensus 271 ~~~~l~~l~~--l~~L~~L~l~~n~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~-----~l~~L~~L~L~~n- 333 (418)
.++. .+.. +++|+.|++++|.+++..+.... ..++.++++.|....+. .+++|+.|+|++|
T Consensus 391 ~lp~--~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~ 468 (636)
T 4eco_A 391 YIPN--IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNM 468 (636)
T ss_dssp SCCS--CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSC
T ss_pred ccch--hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCC
Confidence 7663 3444 44889999999988875433221 25667777777655443 3788888888888
Q ss_pred -CCCCCCCccchh--hhhhhhhhhccCCCCCCcCCCccccccc--CCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCc
Q 014792 334 -KKLPTSSHVSFV--VYFLIFAFSLHASGNNMIEDLASIDSLD--SFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKI 408 (418)
Q Consensus 334 -~~i~~~~~~~~l--~~~~~~l~~l~~~~~n~i~~~~~~~~l~--~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L 408 (418)
..+|....-... ..-...|+.|+++ +|.+..+| ..+. .+++|++|+|++|++...+ . .++.+++|
T Consensus 469 l~~i~~~~~~~~~~~~~~l~~L~~L~Ls-~N~l~~lp--~~~~~~~l~~L~~L~Ls~N~l~~ip-----~--~~~~l~~L 538 (636)
T 4eco_A 469 LTEIPKNSLKDENENFKNTYLLTSIDLR-FNKLTKLS--DDFRATTLPYLVGIDLSYNSFSKFP-----T--QPLNSSTL 538 (636)
T ss_dssp CSBCCSSSSEETTEECTTGGGCCEEECC-SSCCCBCC--GGGSTTTCTTCCEEECCSSCCSSCC-----C--GGGGCSSC
T ss_pred CCCcCHHHhccccccccccCCccEEECc-CCcCCccC--hhhhhccCCCcCEEECCCCCCCCcC-----h--hhhcCCCC
Confidence 445543211000 0011245666666 66666666 3444 6777777777777776422 1 13445666
Q ss_pred eeecC
Q 014792 409 KILNG 413 (418)
Q Consensus 409 ~~Ln~ 413 (418)
+.|++
T Consensus 539 ~~L~L 543 (636)
T 4eco_A 539 KGFGI 543 (636)
T ss_dssp CEEEC
T ss_pred CEEEC
Confidence 66655
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.4e-22 Score=187.00 Aligned_cols=206 Identities=25% Similarity=0.303 Sum_probs=175.1
Q ss_pred ccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCC-CCCCCCccEEE
Q 014792 133 ELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG-LPQLKSIRILV 211 (418)
Q Consensus 133 ~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~ 211 (418)
..+.+++++++++.++..+. +++++|+|++|.+..+. +..+..+++|++|++++|+++..++. +..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~---~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP---ADTKKLDLQSNKLSSLP--SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC---TTCSEEECCSSCCSCCC--TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCCccCCCCC---CCCCEEECcCCCCCeeC--HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 46789999999998876553 78999999999999743 45788999999999999999977764 67899999999
Q ss_pred ecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCC
Q 014792 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNK 291 (418)
Q Consensus 212 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~ 291 (418)
+++|.+... .+..+..+++|++|++++|.++.+++. .+..+++|++|+|++|.+.+++. ..+..+++|+.|++++
T Consensus 92 l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 92 VTDNKLQAL-PIGVFDQLVNLAELRLDRNQLKSLPPR---VFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYN 166 (270)
T ss_dssp CCSSCCCCC-CTTTTTTCSSCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCS
T ss_pred CCCCcCCcC-CHhHcccccCCCEEECCCCccCeeCHH---HhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecC
Confidence 999998752 334457889999999999999988765 57889999999999999998775 5688899999999999
Q ss_pred CCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCccccc
Q 014792 292 NNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDS 371 (418)
Q Consensus 292 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~ 371 (418)
|.++.+.+.. +..+++|+.|+|+ +|.+..++. ..
T Consensus 167 n~l~~~~~~~-----------------~~~l~~L~~L~L~----------------------------~N~l~~~~~-~~ 200 (270)
T 2o6q_A 167 NQLKRVPEGA-----------------FDKLTELKTLKLD----------------------------NNQLKRVPE-GA 200 (270)
T ss_dssp SCCSCCCTTT-----------------TTTCTTCCEEECC----------------------------SSCCSCCCT-TT
T ss_pred CcCcEeChhH-----------------hccCCCcCEEECC----------------------------CCcCCcCCH-HH
Confidence 9999884322 6788999999999 999988875 46
Q ss_pred ccCCCCCceEEcCCCCCCCCCCc
Q 014792 372 LDSFPKLMDIRLSENPVSDPGRG 394 (418)
Q Consensus 372 l~~~~~L~~L~l~~N~l~~~~~~ 394 (418)
+..+++|+.|+|++||+..++.+
T Consensus 201 ~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTCTTCCEEECCSSCBCCSSSS
T ss_pred hccccCCCEEEecCCCeeCCCcc
Confidence 78899999999999999987743
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=4.6e-24 Score=220.25 Aligned_cols=257 Identities=14% Similarity=0.087 Sum_probs=176.8
Q ss_pred CchhhhcCCccEEEcCCCCCCCh---------------HHHHHHhh--cCCCCCEEEcCCCCCCCccC-CCCCCCCccEE
Q 014792 149 ANIGTIVTNLKELDLTGNLLSDW---------------KDIGAFGE--QLPALAVLNLSNNLMSKEVT-GLPQLKSIRIL 210 (418)
Q Consensus 149 ~~~~~~~~~L~~L~Ls~n~l~~~---------------~~l~~~~~--~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L 210 (418)
..+..+ ++|++|+|++|.+++. ..+|..++ ++++|++|++++|++.+..| .+..+++|++|
T Consensus 200 ~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 200 KAVMRL-TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp GGGGGC-TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred HHHhcc-cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 345554 9999999999999860 01788888 99999999999999888766 68999999999
Q ss_pred EecCCC-CCHHHHHHHHhcC------CcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCC-ChhhhhhcCCCC
Q 014792 211 VLNCTG-VNWMQVEILKHSL------PALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIA-EWSEILKLCQIR 282 (418)
Q Consensus 211 ~L~~n~-l~~~~~~~~~~~l------~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~l~~l~~l~ 282 (418)
++++|. +++..+|..++.+ ++|++|++++|.++.++.. ..++.+++|++|++++|.+. .++ .+..++
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~--~~l~~l~~L~~L~L~~N~l~g~ip---~~~~l~ 353 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE--TSLQKMKKLGMLECLYNQLEGKLP---AFGSEI 353 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCH--HHHTTCTTCCEEECCSCCCEEECC---CCEEEE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCch--hhhccCCCCCEEeCcCCcCccchh---hhCCCC
Confidence 999998 8874466666665 8999999999999966640 03788999999999999998 444 577888
Q ss_pred CCCEEecCCCCCCcccCCCCC---ch-hhhhccccccCcccc----C--CCCCcEEEccCC---CCCCCCCc-cchhhhh
Q 014792 283 SLEQLYLNKNNLNRIYYPNND---TI-HELVSAHESHEESYL----P--FQNLCCLLLGNS---KKLPTSSH-VSFVVYF 348 (418)
Q Consensus 283 ~L~~L~l~~n~l~~~~~~~~~---~~-~~~~~~~~~~~~~~~----~--l~~L~~L~L~~n---~~i~~~~~-~~~l~~~ 348 (418)
+|+.|++++|.++.+ |... .. ++.++++.|....+. . +++|+.|++++| +.+|.... ...-...
T Consensus 354 ~L~~L~L~~N~l~~l--p~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 354 KLASLNLAYNQITEI--PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp EESEEECCSSEEEEC--CTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred CCCEEECCCCccccc--cHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 999999999998855 4332 22 555566666433222 2 336777777777 23333321 1000011
Q ss_pred hhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHH-HHHHhhCCceeecCcc
Q 014792 349 LIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRF-AIIARLGKIKILNGSE 415 (418)
Q Consensus 349 ~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~-~~i~~l~~L~~Ln~s~ 415 (418)
...|+.|+++ +|.+..+|. ..+..+++|++|+|++|.+...+....... ....++++|+.|+++.
T Consensus 432 ~~~L~~L~Ls-~N~l~~lp~-~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~ 497 (636)
T 4eco_A 432 GINVSSINLS-NNQISKFPK-ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497 (636)
T ss_dssp CCCEEEEECC-SSCCCSCCT-HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCS
T ss_pred CCCCCEEECc-CCccCcCCH-HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcC
Confidence 1246677777 777777764 245568888888888888874332111100 0012334788888764
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=2.5e-23 Score=219.67 Aligned_cols=270 Identities=15% Similarity=0.132 Sum_probs=192.9
Q ss_pred HHHHHh--cccccceecccCcCcCCCCC-chhhhcCCccEEEcCCCC-CCChHHHHHHhhcCC-------CCCEEEcCCC
Q 014792 124 IQDKFS--KFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNL-LSDWKDIGAFGEQLP-------ALAVLNLSNN 192 (418)
Q Consensus 124 l~~~~~--~l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~-l~~~~~l~~~~~~l~-------~L~~L~Ls~n 192 (418)
+|..++ ++++|+.|+|++|.+.+..+ .+.. +++|++|+|++|. +++ ..+|..++.++ +|++|++++|
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N~~lsg-~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISA-AQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTCTTSCH-HHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCCCCccc-ccchHHHHhhhhcccccCCccEEEeeCC
Confidence 788877 99999999999998877666 5555 4999999999998 763 13676666555 9999999999
Q ss_pred CCCCccC--CCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCC-ccEEeCCCCCC
Q 014792 193 LMSKEVT--GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDN-LQLLNLEDNCI 269 (418)
Q Consensus 193 ~l~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~-L~~L~L~~n~l 269 (418)
+++..+. .+..+++|++|++++|.+. .++ .++.+++|++|++++|.+..++.. +..+++ |+.|+|++|.+
T Consensus 559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~~lp~~----l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 559 NLEEFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIEEIPED----FCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp CCCBCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCSCCCTT----SCEECTTCCEEECCSSCC
T ss_pred cCCccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccccchHH----HhhccccCCEEECcCCCC
Confidence 9996655 5889999999999999988 456 568899999999999999966543 777888 99999999999
Q ss_pred CChhhhhhcCCC--CCCCEEecCCCCCCcccCCC-------CCchhhhhccccccCcccc-----CCCCCcEEEccCC--
Q 014792 270 AEWSEILKLCQI--RSLEQLYLNKNNLNRIYYPN-------NDTIHELVSAHESHEESYL-----PFQNLCCLLLGNS-- 333 (418)
Q Consensus 270 ~~~~~l~~l~~l--~~L~~L~l~~n~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~-----~l~~L~~L~L~~n-- 333 (418)
..++. .+..+ ++|+.|++++|.+++..+.. ....++.++++.|....+. .+++|+.|+|++|
T Consensus 632 ~~lp~--~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 632 KYIPN--IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp CSCCS--CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCC
T ss_pred CcCch--hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcC
Confidence 97663 34444 45999999999987653211 1124667777777655443 5788899999888
Q ss_pred CCCCCCCccchh--hhhhhhhhhccCCCCCCcCCCccccccc--CCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCce
Q 014792 334 KKLPTSSHVSFV--VYFLIFAFSLHASGNNMIEDLASIDSLD--SFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIK 409 (418)
Q Consensus 334 ~~i~~~~~~~~l--~~~~~~l~~l~~~~~n~i~~~~~~~~l~--~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~ 409 (418)
..+|........ .....+|+.|+++ +|.+..+| ..+. .+++|+.|+|++|.+...+ . .+..+++|+
T Consensus 710 ~~ip~~~~~~~~~~l~nl~~L~~L~Ls-~N~L~~lp--~~l~~~~l~~L~~L~Ls~N~L~~lp-----~--~l~~L~~L~ 779 (876)
T 4ecn_A 710 TSIPENSLKPKDGNYKNTYLLTTIDLR-FNKLTSLS--DDFRATTLPYLSNMDVSYNCFSSFP-----T--QPLNSSQLK 779 (876)
T ss_dssp SCCCTTSSSCTTSCCTTGGGCCEEECC-SSCCCCCC--GGGSTTTCTTCCEEECCSSCCSSCC-----C--GGGGCTTCC
T ss_pred CccChHHhccccccccccCCccEEECC-CCCCccch--HHhhhccCCCcCEEEeCCCCCCccc-----h--hhhcCCCCC
Confidence 455544221000 0011246666776 66676666 3454 6777777777777776422 1 134556666
Q ss_pred eecCc
Q 014792 410 ILNGS 414 (418)
Q Consensus 410 ~Ln~s 414 (418)
.|+++
T Consensus 780 ~L~Ls 784 (876)
T 4ecn_A 780 AFGIR 784 (876)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 66554
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=1.5e-23 Score=207.10 Aligned_cols=212 Identities=21% Similarity=0.201 Sum_probs=137.9
Q ss_pred HHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCC
Q 014792 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLK 205 (418)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~ 205 (418)
.+.++++|++|+|++|.+..+.+.....+++|++|+|++|.+..+. +..+..+++|++|++++|++...++ .+..++
T Consensus 83 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 160 (440)
T 3zyj_A 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP--NGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160 (440)
T ss_dssp TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC--TTTSCSCSSCCEEECCSCCCCEECTTTTTTCT
T ss_pred HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC--HhHhhccccCceeeCCCCcccccCHHHhhhCc
Confidence 4566666777777777666655433333466777777777666532 2345666677777777776665554 466666
Q ss_pred CccEEEecCCC-CCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCC
Q 014792 206 SIRILVLNCTG-VNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSL 284 (418)
Q Consensus 206 ~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L 284 (418)
+|++|++++|. +.. ..+..+..+++|++|++++|.++.++. +..+++|+.|+|++|.+.+..+ ..+..+++|
T Consensus 161 ~L~~L~l~~~~~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L 233 (440)
T 3zyj_A 161 SLRRLDLGELKRLSY-ISEGAFEGLSNLRYLNLAMCNLREIPN-----LTPLIKLDELDLSGNHLSAIRP-GSFQGLMHL 233 (440)
T ss_dssp TCCEEECCCCTTCCE-ECTTTTTTCSSCCEEECTTSCCSSCCC-----CTTCSSCCEEECTTSCCCEECT-TTTTTCTTC
T ss_pred ccCEeCCCCCCCcce-eCcchhhcccccCeecCCCCcCccccc-----cCCCcccCEEECCCCccCccCh-hhhccCccC
Confidence 77777776632 221 122234556667777777776665542 4566667777777776666543 456666677
Q ss_pred CEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcC
Q 014792 285 EQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIE 364 (418)
Q Consensus 285 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~ 364 (418)
+.|++++|.|+.+.+.. +..+++|+.|+|+ +|.+.
T Consensus 234 ~~L~L~~n~l~~~~~~~-----------------~~~l~~L~~L~L~----------------------------~N~l~ 268 (440)
T 3zyj_A 234 QKLWMIQSQIQVIERNA-----------------FDNLQSLVEINLA----------------------------HNNLT 268 (440)
T ss_dssp CEEECTTCCCCEECTTS-----------------STTCTTCCEEECT----------------------------TSCCC
T ss_pred CEEECCCCceeEEChhh-----------------hcCCCCCCEEECC----------------------------CCCCC
Confidence 77777777766663222 5566777777777 99998
Q ss_pred CCcccccccCCCCCceEEcCCCCCCCCCC
Q 014792 365 DLASIDSLDSFPKLMDIRLSENPVSDPGR 393 (418)
Q Consensus 365 ~~~~~~~l~~~~~L~~L~l~~N~l~~~~~ 393 (418)
.++. ..+..+++|+.|+|++||+..++.
T Consensus 269 ~~~~-~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 269 LLPH-DLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp CCCT-TTTSSCTTCCEEECCSSCEECSST
T ss_pred ccCh-hHhccccCCCEEEcCCCCccCCCC
Confidence 8875 467889999999999999998873
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=5.9e-23 Score=190.92 Aligned_cols=219 Identities=21% Similarity=0.285 Sum_probs=183.6
Q ss_pred ceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCCCccEEEec
Q 014792 135 TSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLN 213 (418)
Q Consensus 135 ~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~ 213 (418)
+.++++++++..++..+ .++|++|+|++|.+..+. +..+..+++|++|++++|.+....+ .+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVP--AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcccCCcCC---CCCceEEEeeCCcCCccC--HHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCC
Confidence 57889999998887544 379999999999999743 4678899999999999999998755 68899999999999
Q ss_pred CCC-CCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCC
Q 014792 214 CTG-VNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKN 292 (418)
Q Consensus 214 ~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n 292 (418)
+|. +.. ..+..+..+++|++|++++|.++.+++. .+..+++|++|++++|.+...+. ..+..+++|++|++++|
T Consensus 89 ~n~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 89 DNAQLRS-VDPATFHGLGRLHTLHLDRCGLQELGPG---LFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp SCTTCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS
T ss_pred CCCCccc-cCHHHhcCCcCCCEEECCCCcCCEECHh---HhhCCcCCCEEECCCCcccccCH-hHhccCCCccEEECCCC
Confidence 997 664 2244567899999999999999988654 57889999999999999998775 56888999999999999
Q ss_pred CCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccc
Q 014792 293 NLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSL 372 (418)
Q Consensus 293 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l 372 (418)
.++.+.... +..+++|+.|+++ +|.+..+.. ..+
T Consensus 164 ~l~~~~~~~-----------------~~~l~~L~~L~l~----------------------------~n~l~~~~~-~~~ 197 (285)
T 1ozn_A 164 RISSVPERA-----------------FRGLHSLDRLLLH----------------------------QNRVAHVHP-HAF 197 (285)
T ss_dssp CCCEECTTT-----------------TTTCTTCCEEECC----------------------------SSCCCEECT-TTT
T ss_pred cccccCHHH-----------------hcCccccCEEECC----------------------------CCcccccCH-hHc
Confidence 999874322 6778999999999 999887743 578
Q ss_pred cCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 373 DSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 373 ~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
..+++|++|++++|.+.... ...++.+++|+.|+++.
T Consensus 198 ~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 198 RDLGRLMTLYLFANNLSALP------TEALAPLRALQYLRLND 234 (285)
T ss_dssp TTCTTCCEEECCSSCCSCCC------HHHHTTCTTCCEEECCS
T ss_pred cCcccccEeeCCCCcCCcCC------HHHcccCcccCEEeccC
Confidence 89999999999999998532 23477899999999874
No 16
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=206.48 Aligned_cols=232 Identities=19% Similarity=0.207 Sum_probs=188.0
Q ss_pred hhhHHHHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-
Q 014792 121 KDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT- 199 (418)
Q Consensus 121 ~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~- 199 (418)
...+|..+ .++++.|+|++|.+..+++.....+++|++|+|++|.+..+. +..+..+++|++|+|++|+++..++
T Consensus 55 l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~--~~~~~~l~~L~~L~L~~n~l~~~~~~ 130 (440)
T 3zyj_A 55 LREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE--IGAFNGLANLNTLELFDNRLTTIPNG 130 (440)
T ss_dssp CSSCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC--GGGGTTCSSCCEEECCSSCCSSCCTT
T ss_pred cCcCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC--hhhccCCccCCEEECCCCcCCeeCHh
Confidence 34444433 267899999999999887633344599999999999998743 5778899999999999999998777
Q ss_pred CCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccC-CCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhc
Q 014792 200 GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMG-NSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKL 278 (418)
Q Consensus 200 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l 278 (418)
.+..+++|++|++++|.+.. ..+..+..+++|++|++++ +.+..++.. .+..+++|++|+|++|.++.++ .+
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l~~~~---~~ 203 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEG---AFEGLSNLRYLNLAMCNLREIP---NL 203 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTT---TTTTCSSCCEEECTTSCCSSCC---CC
T ss_pred HhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcc---hhhcccccCeecCCCCcCcccc---cc
Confidence 58899999999999999884 2333457899999999998 456666554 5788999999999999999866 47
Q ss_pred CCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCC
Q 014792 279 CQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHAS 358 (418)
Q Consensus 279 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~ 358 (418)
..+++|+.|++++|.|+++.+.. +..+++|+.|+|+
T Consensus 204 ~~l~~L~~L~Ls~N~l~~~~~~~-----------------~~~l~~L~~L~L~--------------------------- 239 (440)
T 3zyj_A 204 TPLIKLDELDLSGNHLSAIRPGS-----------------FQGLMHLQKLWMI--------------------------- 239 (440)
T ss_dssp TTCSSCCEEECTTSCCCEECTTT-----------------TTTCTTCCEEECT---------------------------
T ss_pred CCCcccCEEECCCCccCccChhh-----------------hccCccCCEEECC---------------------------
Confidence 88999999999999999885333 6888999999999
Q ss_pred CCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 359 GNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 359 ~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
+|.+..++. ..+..+++|++|+|++|.++..... .++.+++|+.|+++.
T Consensus 240 -~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 240 -QSQIQVIER-NAFDNLQSLVEINLAHNNLTLLPHD------LFTPLHHLERIHLHH 288 (440)
T ss_dssp -TCCCCEECT-TSSTTCTTCCEEECTTSCCCCCCTT------TTSSCTTCCEEECCS
T ss_pred -CCceeEECh-hhhcCCCCCCEEECCCCCCCccChh------HhccccCCCEEEcCC
Confidence 999988864 5788999999999999999865421 245689999998864
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.5e-23 Score=207.86 Aligned_cols=126 Identities=20% Similarity=0.164 Sum_probs=74.1
Q ss_pred CccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCC--CchhhhhccccccC-----ccccCCCCCcEEEc
Q 014792 258 NLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNN--DTIHELVSAHESHE-----ESYLPFQNLCCLLL 330 (418)
Q Consensus 258 ~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~l~~L~~L~L 330 (418)
+|+.|++++|.+.+..+ ..+..+++|++|++++|.++++.+... ...++.++++.|.. ..+..+++|+.|+|
T Consensus 276 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLK-SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp CCCEEECCSSCCCEECT-TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred CceEEEecCccccccch-hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 45555555555554432 334455555555555555554432221 12333444444422 23567888888888
Q ss_pred cCCC--CC-CCC-CccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCC
Q 014792 331 GNSK--KL-PTS-SHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGR 393 (418)
Q Consensus 331 ~~n~--~i-~~~-~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~ 393 (418)
++|. .+ |.. .. ...|+.|+++ +|.++.++. ..+..+++|++|++++|++.+++.
T Consensus 355 s~N~l~~~~~~~~~~-------l~~L~~L~L~-~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 355 SYNHIRALGDQSFLG-------LPNLKELALD-TNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSSCCCEECTTTTTT-------CTTCCEEECC-SSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcccccChhhccc-------cccccEEECC-CCccccCCH-hHhccCCcccEEEccCCCcccCCC
Confidence 8882 22 222 11 2346677777 788888874 357889999999999999998764
No 18
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.89 E-value=8.6e-24 Score=199.73 Aligned_cols=240 Identities=18% Similarity=0.107 Sum_probs=183.5
Q ss_pred HHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCC
Q 014792 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLK 205 (418)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~ 205 (418)
..+..+++|++|+|++|.+...++.....+++|++|+|++|.+.+.. + +..+++|++|++++|++++.+ ..+
T Consensus 28 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~--~~~l~~L~~L~Ls~n~l~~l~----~~~ 99 (317)
T 3o53_A 28 SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D--LESLSTLRTLDLNNNYVQELL----VGP 99 (317)
T ss_dssp HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E--ETTCTTCCEEECCSSEEEEEE----ECT
T ss_pred HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h--hhhcCCCCEEECcCCcccccc----CCC
Confidence 44566789999999999999987633334599999999999998633 2 789999999999999988654 348
Q ss_pred CccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhc-CCCCCC
Q 014792 206 SIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKL-CQIRSL 284 (418)
Q Consensus 206 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l-~~l~~L 284 (418)
+|++|++++|.+..... ..+++|++|++++|.++.+++. .+..+++|++|+|++|.+.+.+. ..+ ..+++|
T Consensus 100 ~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L 171 (317)
T 3o53_A 100 SIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDL---DEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTL 171 (317)
T ss_dssp TCCEEECCSSCCSEEEE----CCCSSCEEEECCSSCCCSGGGB---CTGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTC
T ss_pred CcCEEECCCCccCCcCc----cccCCCCEEECCCCCCCCccch---hhhccCCCCEEECCCCCCCcccH-HHHhhccCcC
Confidence 89999999999875321 4578999999999999987654 46778999999999999998754 344 468999
Q ss_pred CEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCC--CCCCCCCccchhhhhhhhhhhccCCCCCC
Q 014792 285 EQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNS--KKLPTSSHVSFVVYFLIFAFSLHASGNNM 362 (418)
Q Consensus 285 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n--~~i~~~~~~~~l~~~~~~l~~l~~~~~n~ 362 (418)
++|++++|.++.+. . ...+++|+.|+|++| ..+|.. + .....|+.|+++ +|.
T Consensus 172 ~~L~L~~N~l~~~~--~-----------------~~~l~~L~~L~Ls~N~l~~l~~~--~----~~l~~L~~L~L~-~N~ 225 (317)
T 3o53_A 172 EHLNLQYNFIYDVK--G-----------------QVVFAKLKTLDLSSNKLAFMGPE--F----QSAAGVTWISLR-NNK 225 (317)
T ss_dssp CEEECTTSCCCEEE--C-----------------CCCCTTCCEEECCSSCCCEECGG--G----GGGTTCSEEECT-TSC
T ss_pred CEEECCCCcCcccc--c-----------------ccccccCCEEECCCCcCCcchhh--h----cccCcccEEECc-CCc
Confidence 99999999999883 2 234677888888877 233222 1 112346677776 889
Q ss_pred cCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCc
Q 014792 363 IEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 414 (418)
Q Consensus 363 i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 414 (418)
+..+| ..+..+++|+.|++++|++... .....++.+++|+.|+++
T Consensus 226 l~~l~--~~~~~l~~L~~L~l~~N~~~~~-----~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 226 LVLIE--KALRFSQNLEHFDLRGNGFHCG-----TLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CCEEC--TTCCCCTTCCEEECTTCCCBHH-----HHHHHHHTCHHHHHHHHH
T ss_pred ccchh--hHhhcCCCCCEEEccCCCccCc-----CHHHHHhccccceEEECC
Confidence 98887 4688999999999999999832 233446677777777654
No 19
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=2.4e-23 Score=206.39 Aligned_cols=213 Identities=20% Similarity=0.198 Sum_probs=131.8
Q ss_pred HHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCC
Q 014792 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQL 204 (418)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l 204 (418)
..+.++++|+.|+|++|.|..+.+.....+++|++|+|++|.+..+. +..+..+++|++|++++|++...++ .+..+
T Consensus 93 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 170 (452)
T 3zyi_A 93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP--SGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC--TTTSSSCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC--hhhhcccCCCCEEECCCCCcceeCHhHHhcC
Confidence 34556666666666666666555422222366666666666666422 3345566666666666666665544 35566
Q ss_pred CCccEEEecCC-CCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCC
Q 014792 205 KSIRILVLNCT-GVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS 283 (418)
Q Consensus 205 ~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~ 283 (418)
++|++|++++| .+.. .....+..+++|++|++++|.++.++. +..+++|+.|+|++|.+.+..+ ..+..+++
T Consensus 171 ~~L~~L~l~~~~~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~ 243 (452)
T 3zyi_A 171 PSLMRLDLGELKKLEY-ISEGAFEGLFNLKYLNLGMCNIKDMPN-----LTPLVGLEELEMSGNHFPEIRP-GSFHGLSS 243 (452)
T ss_dssp TTCCEEECCCCTTCCE-ECTTTTTTCTTCCEEECTTSCCSSCCC-----CTTCTTCCEEECTTSCCSEECG-GGGTTCTT
T ss_pred CcccEEeCCCCCCccc-cChhhccCCCCCCEEECCCCccccccc-----ccccccccEEECcCCcCcccCc-ccccCccC
Confidence 66666666653 2221 112223556666666666666665532 4555666666666666666543 45566666
Q ss_pred CCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCc
Q 014792 284 LEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMI 363 (418)
Q Consensus 284 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i 363 (418)
|+.|++++|.++.+.+.. +..+++|+.|+|+ +|.+
T Consensus 244 L~~L~L~~n~l~~~~~~~-----------------~~~l~~L~~L~L~----------------------------~N~l 278 (452)
T 3zyi_A 244 LKKLWVMNSQVSLIERNA-----------------FDGLASLVELNLA----------------------------HNNL 278 (452)
T ss_dssp CCEEECTTSCCCEECTTT-----------------TTTCTTCCEEECC----------------------------SSCC
T ss_pred CCEEEeCCCcCceECHHH-----------------hcCCCCCCEEECC----------------------------CCcC
Confidence 666666666666553222 4556667777777 9999
Q ss_pred CCCcccccccCCCCCceEEcCCCCCCCCCC
Q 014792 364 EDLASIDSLDSFPKLMDIRLSENPVSDPGR 393 (418)
Q Consensus 364 ~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~ 393 (418)
..++. ..+..+++|++|+|++||+..++.
T Consensus 279 ~~~~~-~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 279 SSLPH-DLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp SCCCT-TSSTTCTTCCEEECCSSCEECSTT
T ss_pred CccCh-HHhccccCCCEEEccCCCcCCCCC
Confidence 88875 467889999999999999998873
No 20
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=4.9e-23 Score=200.17 Aligned_cols=201 Identities=14% Similarity=0.158 Sum_probs=136.8
Q ss_pred EEEechhhHHH-HHhcccccceecccCcCcCCCCC-chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCC
Q 014792 116 IELVGKDKIQD-KFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNL 193 (418)
Q Consensus 116 l~~~g~~~l~~-~~~~l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~ 193 (418)
+....+..+|. .+..+++|++|++++|.+...++ .+.. +++|++|+|++|.+..+ .|..++.+++|++|++++|+
T Consensus 52 l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~ 128 (390)
T 3o6n_A 52 FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYL--PPHVFQNVPLLTVLVLERND 128 (390)
T ss_dssp EESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSC
T ss_pred ecCCchhhCChhHhcccccCcEEECCCCcccccChhhccC-CCCcCEEECCCCCCCcC--CHHHhcCCCCCCEEECCCCc
Confidence 33333455553 46889999999999999988877 4444 59999999999999974 25678899999999999999
Q ss_pred CCCccCC-CCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCCh
Q 014792 194 MSKEVTG-LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEW 272 (418)
Q Consensus 194 l~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 272 (418)
+...++. +..+++|++|++++|.+... .+..+..+++|++|++++|.++..+ +..+++|+.|++++|.+..+
T Consensus 129 l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~------~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 129 LSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHVD------LSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTSSCTTCCEEECCSSCCSBCC------GGGCTTCSEEECCSSCCSEE
T ss_pred cCcCCHHHhcCCCCCcEEECCCCccCcc-ChhhccCCCCCCEEECCCCcCCccc------cccccccceeeccccccccc
Confidence 9977765 58899999999999998752 3444578899999999999998764 34556777777777766543
Q ss_pred hhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccC---ccccCCCCCcEEEccCC
Q 014792 273 SEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHE---ESYLPFQNLCCLLLGNS 333 (418)
Q Consensus 273 ~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~~L~L~~n 333 (418)
+ ..++|+.|++++|.++.+.. .....++.++++.+.. ..+..+++|+.|++++|
T Consensus 202 ~------~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n 258 (390)
T 3o6n_A 202 A------IPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 258 (390)
T ss_dssp E------CCSSCSEEECCSSCCCEEEC-CCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSS
T ss_pred C------CCCcceEEECCCCeeeeccc-cccccccEEECCCCCCcccHHHcCCCCccEEECCCC
Confidence 2 22344455555554444421 1122333333333322 12334455555555544
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=4.5e-23 Score=204.40 Aligned_cols=223 Identities=20% Similarity=0.213 Sum_probs=178.7
Q ss_pred cccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCC-CCCCCCccEE
Q 014792 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG-LPQLKSIRIL 210 (418)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L 210 (418)
++++.|+|++|.|+.+.+.....+++|++|+|++|.+..+. +..+..+++|++|+|++|+++..++. +..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE--VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC--hhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 57899999999998876643334599999999999988743 56788899999999999999877764 7889999999
Q ss_pred EecCCCCCHHHHHHHHhcCCcccEEEccC-CCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEec
Q 014792 211 VLNCTGVNWMQVEILKHSLPALEELHLMG-NSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYL 289 (418)
Q Consensus 211 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l 289 (418)
++++|.+.. ..+..+..+++|++|++++ +.+..++.. .+..+++|++|+|++|.+.+++ .+..+++|+.|++
T Consensus 153 ~L~~N~l~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~---~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~L 225 (452)
T 3zyi_A 153 WLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLEYISEG---AFEGLFNLKYLNLGMCNIKDMP---NLTPLVGLEELEM 225 (452)
T ss_dssp ECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTT---TTTTCTTCCEEECTTSCCSSCC---CCTTCTTCCEEEC
T ss_pred ECCCCCcce-eCHhHHhcCCcccEEeCCCCCCccccChh---hccCCCCCCEEECCCCcccccc---cccccccccEEEC
Confidence 999998874 2333457889999999998 556666544 4778899999999999998865 4778889999999
Q ss_pred CCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCccc
Q 014792 290 NKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASI 369 (418)
Q Consensus 290 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~ 369 (418)
++|.++++.+.. +..+++|+.|+|+ +|.+..++.
T Consensus 226 s~N~l~~~~~~~-----------------~~~l~~L~~L~L~----------------------------~n~l~~~~~- 259 (452)
T 3zyi_A 226 SGNHFPEIRPGS-----------------FHGLSSLKKLWVM----------------------------NSQVSLIER- 259 (452)
T ss_dssp TTSCCSEECGGG-----------------GTTCTTCCEEECT----------------------------TSCCCEECT-
T ss_pred cCCcCcccCccc-----------------ccCccCCCEEEeC----------------------------CCcCceECH-
Confidence 999998874322 6788999999999 999987754
Q ss_pred ccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 370 DSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 370 ~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
..+..+++|++|+|++|.+...... .+..+++|+.|+++.
T Consensus 260 ~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 260 NAFDGLASLVELNLAHNNLSSLPHD------LFTPLRYLVELHLHH 299 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTT------SSTTCTTCCEEECCS
T ss_pred HHhcCCCCCCEEECCCCcCCccChH------HhccccCCCEEEccC
Confidence 5788999999999999999865422 245689999998864
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=3.5e-23 Score=206.51 Aligned_cols=253 Identities=17% Similarity=0.125 Sum_probs=161.3
Q ss_pred HHHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCC
Q 014792 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQ 203 (418)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~ 203 (418)
|..+.++++|++|+|++|.++.+++.....+++|++|+|++|.+..+ .+..+..+++|++|++++|.+....+ .+..
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 150 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL--LDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEEECCTTCCEECTTSSTT
T ss_pred hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC--ChhHccccccCCEEECCCCccceeChhhccC
Confidence 45677888888999988888888775444458899999998888863 35667888889999999888887765 5788
Q ss_pred CCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCC
Q 014792 204 LKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS 283 (418)
Q Consensus 204 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~ 283 (418)
+++|++|++++|.++.. .+..+..+++|+.|++++|.+..+++. .+..+++|+.|++++|.+.+..+ .......+
T Consensus 151 l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~ 225 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNINAIRDY---SFKRLYRLKVLEISHWPYLDTMT-PNCLYGLN 225 (477)
T ss_dssp CTTCCEEEEESCCCSSC-CHHHHTTCTTCCEEEEESCCCCEECTT---CSCSCTTCCEEEEECCTTCCEEC-TTTTTTCC
T ss_pred CCCCCEEECCCCcCccc-ChhHhcccCCCcEEeCCCCcCcEeChh---hcccCcccceeeCCCCccccccC-cccccCcc
Confidence 88899999998888752 344557888899999988888877654 35556666666666554333211 11222234
Q ss_pred CCEEecCCCCCCcccCC--CCCchhhhhccccccC-----ccccCCCCCcEEEccCCC--CC-CCCCccchhhhhhhhhh
Q 014792 284 LEQLYLNKNNLNRIYYP--NNDTIHELVSAHESHE-----ESYLPFQNLCCLLLGNSK--KL-PTSSHVSFVVYFLIFAF 353 (418)
Q Consensus 284 L~~L~l~~n~l~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~l~~L~~L~L~~n~--~i-~~~~~~~~l~~~~~~l~ 353 (418)
|+.|++++|.++.+... .....++.++++.|.. ..+..+++|+.|+|++|. .+ |... .-...|+
T Consensus 226 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~ 299 (477)
T 2id5_A 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF------RGLNYLR 299 (477)
T ss_dssp CSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB------TTCTTCC
T ss_pred ccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh------cCcccCC
Confidence 44444444444443110 1112233333333321 224566777777777662 11 1111 0112355
Q ss_pred hccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCC
Q 014792 354 SLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 392 (418)
Q Consensus 354 ~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~ 392 (418)
.|+++ +|.+..++. ..+..+++|++|+|++|++..++
T Consensus 300 ~L~L~-~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~c~c 336 (477)
T 2id5_A 300 VLNVS-GNQLTTLEE-SVFHSVGNLETLILDSNPLACDC 336 (477)
T ss_dssp EEECC-SSCCSCCCG-GGBSCGGGCCEEECCSSCEECSG
T ss_pred EEECC-CCcCceeCH-hHcCCCcccCEEEccCCCccCcc
Confidence 66666 777877764 45677888888888888887665
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.1e-23 Score=212.62 Aligned_cols=243 Identities=19% Similarity=0.145 Sum_probs=135.9
Q ss_pred HHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCC
Q 014792 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLK 205 (418)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~ 205 (418)
.++.+++|++|+|++|.++..++.....+++|++|+|++|.+..++ +..++.+++|++|++++|.+.+.++ .+..++
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 171 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCC--HHHhccCCCCCEEEeeCCcCCCCChhhhhcCC
Confidence 5666777777777777777766644333477777777777776532 2345667777777777777776655 466777
Q ss_pred CccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCC-C------------ccCCCCCccEEeCCCCCCCCh
Q 014792 206 SIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSS-P------------IVQGFDNLQLLNLEDNCIAEW 272 (418)
Q Consensus 206 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~------------~~~~l~~L~~L~L~~n~l~~~ 272 (418)
+|++|++++|.++... +..+++|+.|++++|.+..+..... . .....++|+.|+|++|.+++.
T Consensus 172 ~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~ 247 (597)
T 3oja_B 172 SLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT 247 (597)
T ss_dssp TCCEEECTTSCCSBCC----GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC
T ss_pred cCcEEECcCCCCCCcC----hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC
Confidence 7777777777665421 2345555555554444433211000 0 001124677777777777764
Q ss_pred hhhhhcCCCCCCCEEecCCCCCCcccCCCC--CchhhhhccccccCcc----ccCCCCCcEEEccCC--CCCCCCCccch
Q 014792 273 SEILKLCQIRSLEQLYLNKNNLNRIYYPNN--DTIHELVSAHESHEES----YLPFQNLCCLLLGNS--KKLPTSSHVSF 344 (418)
Q Consensus 273 ~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~~~~~~~~~~~~----~~~l~~L~~L~L~~n--~~i~~~~~~~~ 344 (418)
..+..+++|+.|++++|.++++.+... ...+..++++.|.... +..+++|+.|+|++| ..+|..
T Consensus 248 ---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~----- 319 (597)
T 3oja_B 248 ---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERN----- 319 (597)
T ss_dssp ---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGG-----
T ss_pred ---hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcc-----
Confidence 346778888888888888887743321 1233444444443222 233556666666655 222211
Q ss_pred hhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCC
Q 014792 345 VVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVS 389 (418)
Q Consensus 345 l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~ 389 (418)
......|+.|+++ +|.+..++ +..+++|+.|++++|++.
T Consensus 320 -~~~l~~L~~L~L~-~N~l~~~~----~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 320 -QPQFDRLENLYLD-HNSIVTLK----LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp -HHHHTTCSEEECC-SSCCCCCC----CCTTCCCSEEECCSSCEE
T ss_pred -cccCCCCCEEECC-CCCCCCcC----hhhcCCCCEEEeeCCCCC
Confidence 1122334555555 45554443 445556666666666655
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=2e-23 Score=198.11 Aligned_cols=217 Identities=17% Similarity=0.170 Sum_probs=182.5
Q ss_pred EEEechhhHHHHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCC
Q 014792 116 IELVGKDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMS 195 (418)
Q Consensus 116 l~~~g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~ 195 (418)
+...++..+|..+.++++|++|+|++|.+..++..+..+ ++|++|+|++|.+.. +|..+..+++|++|++++|++.
T Consensus 88 L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l-~~L~~L~Ls~n~l~~---lp~~l~~l~~L~~L~L~~n~~~ 163 (328)
T 4fcg_A 88 LRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQF-AGLETLTLARNPLRA---LPASIASLNRLRELSIRACPEL 163 (328)
T ss_dssp EESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGG-TTCSEEEEESCCCCC---CCGGGGGCTTCCEEEEEEETTC
T ss_pred ccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhcc-CCCCEEECCCCcccc---CcHHHhcCcCCCEEECCCCCCc
Confidence 333445677888889999999999999999777677775 999999999999994 5778999999999999998776
Q ss_pred CccC-CCC---------CCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCC
Q 014792 196 KEVT-GLP---------QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLE 265 (418)
Q Consensus 196 ~~~~-~l~---------~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~ 265 (418)
+..+ .+. .+++|++|++++|.++ .++..+..+++|++|++++|.++++++ .+..+++|++|+|+
T Consensus 164 ~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~----~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 164 TELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGP----AIHHLPKLEELDLR 237 (328)
T ss_dssp CCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCG----GGGGCTTCCEEECT
T ss_pred cccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCch----hhccCCCCCEEECc
Confidence 6655 444 3999999999999998 566667899999999999999998765 38889999999999
Q ss_pred CCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchh
Q 014792 266 DNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFV 345 (418)
Q Consensus 266 ~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l 345 (418)
+|.+.+..+ ..+..+++|++|++++|.+.+..+.. +..+++|+.|+|+
T Consensus 238 ~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p~~-----------------~~~l~~L~~L~L~-------------- 285 (328)
T 4fcg_A 238 GCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLD-----------------IHRLTQLEKLDLR-------------- 285 (328)
T ss_dssp TCTTCCBCC-CCTTCCCCCCEEECTTCTTCCBCCTT-----------------GGGCTTCCEEECT--------------
T ss_pred CCcchhhhH-HHhcCCCCCCEEECCCCCchhhcchh-----------------hhcCCCCCEEeCC--------------
Confidence 998887554 56889999999999999877664333 6889999999999
Q ss_pred hhhhhhhhhccCCCCCC-cCCCcccccccCCCCCceEEcCCCCCCC
Q 014792 346 VYFLIFAFSLHASGNNM-IEDLASIDSLDSFPKLMDIRLSENPVSD 390 (418)
Q Consensus 346 ~~~~~~l~~l~~~~~n~-i~~~~~~~~l~~~~~L~~L~l~~N~l~~ 390 (418)
+|. ++.+| +.+..+++|+.+++..+.+..
T Consensus 286 --------------~n~~~~~iP--~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 286 --------------GCVNLSRLP--SLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp --------------TCTTCCCCC--GGGGGSCTTCEEECCGGGSCC
T ss_pred --------------CCCchhhcc--HHHhhccCceEEeCCHHHHHH
Confidence 644 57787 589999999999999887763
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=1.7e-23 Score=210.96 Aligned_cols=89 Identities=17% Similarity=0.151 Sum_probs=75.5
Q ss_pred HHHHhcccccceecccCcCcCCCCC-chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCc-c-CCC
Q 014792 125 QDKFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKE-V-TGL 201 (418)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~-~-~~l 201 (418)
|..+..+++|++|+|++|.++...+ .+.. +++|++|+|++|.+..+ |.. .+++|++|++++|++++. . ..+
T Consensus 38 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~l---p~~--~l~~L~~L~L~~N~l~~~~~p~~~ 111 (520)
T 2z7x_B 38 TSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLSHNKLVKI---SCH--PTVNLKHLDLSFNAFDALPICKEF 111 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCCEEEGGGGTT-CTTCCEEECCSSCCCEE---ECC--CCCCCSEEECCSSCCSSCCCCGGG
T ss_pred hhhccccccccEEecCCCccCCcChHHhhc-ccCCCEEecCCCceeec---Ccc--ccCCccEEeccCCccccccchhhh
Confidence 4789999999999999999998866 4544 59999999999999964 444 799999999999999874 3 468
Q ss_pred CCCCCccEEEecCCCCCH
Q 014792 202 PQLKSIRILVLNCTGVNW 219 (418)
Q Consensus 202 ~~l~~L~~L~L~~n~l~~ 219 (418)
..+++|++|++++|.+..
T Consensus 112 ~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 112 GNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp GGCTTCCEEEEEESSCCG
T ss_pred ccCCcceEEEecCcccch
Confidence 899999999999988764
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=5.9e-23 Score=210.90 Aligned_cols=269 Identities=17% Similarity=0.178 Sum_probs=194.7
Q ss_pred HHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC--CCCC
Q 014792 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT--GLPQ 203 (418)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~--~l~~ 203 (418)
..++.+++|++|++++|.++.++..+..+ ++|++|++++|.+... .|..+..+++|++|++++|.+.+..+ .+..
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l-~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSELPSGLVGL-STLKKLVLSANKFENL--CQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCCCSSCCSC-TTCCEEECTTCCCSBG--GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred HHhccccCCCEEeccCCccCCCChhhccc-ccCCEEECccCCcCcC--chhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 34778888999999999888877666664 8899999999988873 35677888999999999988875443 3778
Q ss_pred CCCccEEEecCCCCCHHHH-HHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCC
Q 014792 204 LKSIRILVLNCTGVNWMQV-EILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIR 282 (418)
Q Consensus 204 l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~ 282 (418)
+++|++|++++|.+..... +..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+....+...+..++
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE---AFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT---TTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH---HhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 8899999999988874220 33457788999999999988877654 5777888999999999887654323477888
Q ss_pred CCCEEecCCCCCCcccCCCC--CchhhhhccccccC--------ccccCCCCCcEEEccCCC--CC-CCCCccchhhhhh
Q 014792 283 SLEQLYLNKNNLNRIYYPNN--DTIHELVSAHESHE--------ESYLPFQNLCCLLLGNSK--KL-PTSSHVSFVVYFL 349 (418)
Q Consensus 283 ~L~~L~l~~n~l~~~~~~~~--~~~~~~~~~~~~~~--------~~~~~l~~L~~L~L~~n~--~i-~~~~~~~~l~~~~ 349 (418)
+|+.|++++|.++...+... ...++.++++.|.. ..+..+++|+.|++++|. .+ |... .-.
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------~~l 499 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF------TSL 499 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT------TTC
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh------ccc
Confidence 89999999998877644322 34566667776653 335677888888888872 22 2221 112
Q ss_pred hhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 350 IFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 350 ~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
..|+.|+++ +|.+...+. ..+..+++| .|++++|.++... + ..++.+++|+.|+++.
T Consensus 500 ~~L~~L~Ls-~N~l~~~~~-~~l~~l~~L-~L~L~~N~l~~~~----~--~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 500 KMMNHVDLS-HNRLTSSSI-EALSHLKGI-YLNLASNHISIIL----P--SLLPILSQQRTINLRQ 556 (606)
T ss_dssp TTCCEEECC-SSCCCGGGG-GGGTTCCSC-EEECCSSCCCCCC----G--GGHHHHHTSSEEECTT
T ss_pred cCCCEEECC-CCccCcCCh-hHhCccccc-EEECcCCcccccC----H--hhcccCCCCCEEeCCC
Confidence 346677777 677766543 577888888 8888888888533 2 1256678888888764
No 27
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=7.7e-24 Score=223.34 Aligned_cols=168 Identities=21% Similarity=0.204 Sum_probs=76.9
Q ss_pred hHHHH-HhcccccceecccCcCcCC-CCCchhhhcCCccEEEcCCCCCCChH------------------------HHHH
Q 014792 123 KIQDK-FSKFEELTSAALPYLGVSS-PGANIGTIVTNLKELDLTGNLLSDWK------------------------DIGA 176 (418)
Q Consensus 123 ~l~~~-~~~l~~L~~L~L~~~~i~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~------------------------~l~~ 176 (418)
.+|.. +..+++|++|++++|.+.+ .+..+....++|++|+|++|.+.+.. .+|.
T Consensus 333 ~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 412 (768)
T 3rgz_A 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412 (768)
T ss_dssp ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG
T ss_pred cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH
Confidence 34433 7777778888887777763 33344443125555555555443200 2333
Q ss_pred HhhcCCCCCEEEcCCCCCCCccC-CCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCC
Q 014792 177 FGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQG 255 (418)
Q Consensus 177 ~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 255 (418)
.+..+++|++|++++|++++..+ .+..+++|++|++++|.+.. .++..+..+++|++|++++|.+++..+. .+..
T Consensus 413 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~ 488 (768)
T 3rgz_A 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPS---GLSN 488 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSCCCG---GGGG
T ss_pred HHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccC-cCCHHHcCCCCceEEEecCCcccCcCCH---HHhc
Confidence 44444444444444444443333 34444444444444444432 1222234444444444444444433221 2344
Q ss_pred CCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCC
Q 014792 256 FDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLN 295 (418)
Q Consensus 256 l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~ 295 (418)
+++|++|+|++|.+.+..+ ..++.+++|+.|++++|+++
T Consensus 489 l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp CTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCE
T ss_pred CCCCCEEEccCCccCCcCC-hHHhcCCCCCEEECCCCccc
Confidence 4444444444444443221 23344444444444444444
No 28
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=3.8e-23 Score=194.85 Aligned_cols=210 Identities=20% Similarity=0.203 Sum_probs=168.6
Q ss_pred HhcccccceecccCcCcCCCCC-chh-hhcCCccEEEcCCCCCCChHHHHHHhhcC-----CCCCEEEcCCCCCCCccC-
Q 014792 128 FSKFEELTSAALPYLGVSSPGA-NIG-TIVTNLKELDLTGNLLSDWKDIGAFGEQL-----PALAVLNLSNNLMSKEVT- 199 (418)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~-~~~-~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l-----~~L~~L~Ls~n~l~~~~~- 199 (418)
+.++++|++|++++|.+++..+ .+. ..+++|++|+|++|.+.+. |..++.+ ++|++|++++|++.+.++
T Consensus 91 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~ 167 (312)
T 1wwl_A 91 VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR---DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167 (312)
T ss_dssp HHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS---SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred hcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch---hHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence 3478999999999999986555 441 3459999999999999974 4555555 899999999999998885
Q ss_pred CCCCCCCccEEEecCCCCCHH-HHHHHH--hcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhh
Q 014792 200 GLPQLKSIRILVLNCTGVNWM-QVEILK--HSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEIL 276 (418)
Q Consensus 200 ~l~~l~~L~~L~L~~n~l~~~-~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~ 276 (418)
.+..+++|++|++++|.+... ..+..+ ..+++|++|++++|.++.++......+..+++|++|+|++|.+.+..+..
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence 688999999999999998753 233333 78899999999999998543211112456789999999999999866434
Q ss_pred hcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhcc
Q 014792 277 KLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLH 356 (418)
Q Consensus 277 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~ 356 (418)
.+..+++|++|++++|.|+.+ |.. +. ++|+.|+|+
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~~i--p~~----------------~~--~~L~~L~Ls------------------------- 282 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLKQV--PKG----------------LP--AKLSVLDLS------------------------- 282 (312)
T ss_dssp CCCCCTTCCEEECTTSCCSSC--CSS----------------CC--SEEEEEECC-------------------------
T ss_pred hhhhcCCCCEEECCCCccChh--hhh----------------cc--CCceEEECC-------------------------
Confidence 566789999999999999966 443 22 799999999
Q ss_pred CCCCCCcCCCcccccccCCCCCceEEcCCCCCCCC
Q 014792 357 ASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDP 391 (418)
Q Consensus 357 ~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~ 391 (418)
+|.++.+| .+..+++|++|++++|++++.
T Consensus 283 ---~N~l~~~p---~~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 283 ---YNRLDRNP---SPDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp ---SSCCCSCC---CTTTSCEEEEEECTTCTTTCC
T ss_pred ---CCCCCCCh---hHhhCCCCCEEeccCCCCCCC
Confidence 99999986 388999999999999999853
No 29
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=3e-23 Score=218.80 Aligned_cols=268 Identities=19% Similarity=0.202 Sum_probs=200.7
Q ss_pred HHHHhc--ccccceecccCcCcCCCCC-chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-C
Q 014792 125 QDKFSK--FEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-G 200 (418)
Q Consensus 125 ~~~~~~--l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~ 200 (418)
+..+.. +++|++|++++|.+.+..+ .+.. +++|++|+|++|.+.+ .+|..+..+++|++|++++|++.+..+ .
T Consensus 385 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 461 (768)
T 3rgz_A 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSG--TIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461 (768)
T ss_dssp CTTTTCSTTCCCCEEECCSSEEEEECCGGGGG-CTTCCEEECCSSEEES--CCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred ChhhhhcccCCccEEECCCCccccccCHHHhc-CCCCCEEECcCCcccC--cccHHHhcCCCCCEEECCCCcccCcCCHH
Confidence 444444 7889999999999986555 4555 5999999999999886 567888999999999999999987666 6
Q ss_pred CCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCC
Q 014792 201 LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ 280 (418)
Q Consensus 201 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~ 280 (418)
+..+++|++|++++|.+.. .++..+..+++|++|++++|.+++..+. .++.+++|++|+|++|.+.+..+ ..+..
T Consensus 462 ~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~p-~~l~~ 536 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPK---WIGRLENLAILKLSNNSFSGNIP-AELGD 536 (768)
T ss_dssp GGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSCCCG---GGGGCTTCCEEECCSSCCEEECC-GGGGG
T ss_pred HcCCCCceEEEecCCcccC-cCCHHHhcCCCCCEEEccCCccCCcCCh---HHhcCCCCCEEECCCCcccCcCC-HHHcC
Confidence 8889999999999999886 3555668899999999999999866544 57889999999999999986544 57888
Q ss_pred CCCCCEEecCCCCCCcccCCCCCchhhh------------------------------------------------hc--
Q 014792 281 IRSLEQLYLNKNNLNRIYYPNNDTIHEL------------------------------------------------VS-- 310 (418)
Q Consensus 281 l~~L~~L~l~~n~l~~~~~~~~~~~~~~------------------------------------------------~~-- 310 (418)
+++|+.|++++|.+++..+......... .+
T Consensus 537 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 616 (768)
T 3rgz_A 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616 (768)
T ss_dssp CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTT
T ss_pred CCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccc
Confidence 9999999999998875433221110000 00
Q ss_pred ---cccccCccccCCCCCcEEEccCC---CCCCCCCccchhhhhhhhhhhccCCCCCCc-CCCcccccccCCCCCceEEc
Q 014792 311 ---AHESHEESYLPFQNLCCLLLGNS---KKLPTSSHVSFVVYFLIFAFSLHASGNNMI-EDLASIDSLDSFPKLMDIRL 383 (418)
Q Consensus 311 ---~~~~~~~~~~~l~~L~~L~L~~n---~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i-~~~~~~~~l~~~~~L~~L~l 383 (418)
+....+..+..+++|+.|+|++| +.+|.... -...|+.|+++ +|.+ +.+| ..+..+++|+.|+|
T Consensus 617 ~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~------~l~~L~~L~Ls-~N~l~g~ip--~~l~~L~~L~~LdL 687 (768)
T 3rgz_A 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG------SMPYLFILNLG-HNDISGSIP--DEVGDLRGLNILDL 687 (768)
T ss_dssp SCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG------GCTTCCEEECC-SSCCCSCCC--GGGGGCTTCCEEEC
T ss_pred cceecccCchhhhccccccEEECcCCcccccCCHHHh------ccccCCEEeCc-CCccCCCCC--hHHhCCCCCCEEEC
Confidence 01112345667889999999988 46665522 12346678888 6666 4777 57889999999999
Q ss_pred CCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 384 SENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 384 ~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
++|.+++. .+. .++.++.|+.||+|.
T Consensus 688 s~N~l~g~----ip~--~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 688 SSNKLDGR----IPQ--AMSALTMLTEIDLSN 713 (768)
T ss_dssp CSSCCEEC----CCG--GGGGCCCCSEEECCS
T ss_pred CCCcccCc----CCh--HHhCCCCCCEEECcC
Confidence 99999843 232 267889999999874
No 30
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3.1e-23 Score=207.29 Aligned_cols=249 Identities=18% Similarity=0.167 Sum_probs=187.8
Q ss_pred EEEEechhhHHHHHhccc----ccceecccCcCcCCCCC-chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEc
Q 014792 115 SIELVGKDKIQDKFSKFE----ELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNL 189 (418)
Q Consensus 115 ~l~~~g~~~l~~~~~~l~----~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~L 189 (418)
.+.......+|..+..+. +|+.|+|++|.+...++ .+.. +++|++|+|++|.+.+.. | +..+++|++|+|
T Consensus 13 ~~~~~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~--~--l~~l~~L~~L~L 87 (487)
T 3oja_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP-FTKLELLNLSSNVLYETL--D--LESLSTLRTLDL 87 (487)
T ss_dssp EEESCCTTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTT-CTTCCEEECTTSCCEEEE--E--CTTCTTCCEEEC
T ss_pred ecccCchhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhC-CCCCCEEEeeCCCCCCCc--c--cccCCCCCEEEe
Confidence 344444456777766655 89999999999999887 4544 599999999999998632 2 789999999999
Q ss_pred CCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCC
Q 014792 190 SNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCI 269 (418)
Q Consensus 190 s~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l 269 (418)
++|.+++.++ .++|++|++++|.+..... ..+++|+.|++++|.+++.++. .++.+++|++|+|++|.+
T Consensus 88 s~N~l~~l~~----~~~L~~L~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l 156 (487)
T 3oja_A 88 NNNYVQELLV----GPSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDL---DEGCRSRVQYLDLKLNEI 156 (487)
T ss_dssp CSSEEEEEEE----CTTCCEEECCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGB---CGGGGSSEEEEECTTSCC
T ss_pred cCCcCCCCCC----CCCcCEEECcCCcCCCCCc----cccCCCCEEECCCCCCCCCCch---hhcCCCCCCEEECCCCCC
Confidence 9999886653 3889999999999885322 4578999999999999987654 477889999999999999
Q ss_pred CChhhhhhcC-CCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCC--CCCCCCCccchhh
Q 014792 270 AEWSEILKLC-QIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNS--KKLPTSSHVSFVV 346 (418)
Q Consensus 270 ~~~~~l~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n--~~i~~~~~~~~l~ 346 (418)
++.++ ..+. .+++|+.|++++|.|+++. . ...+++|+.|+|++| ..+|.. +
T Consensus 157 ~~~~~-~~l~~~l~~L~~L~Ls~N~l~~~~--~-----------------~~~l~~L~~L~Ls~N~l~~~~~~--~---- 210 (487)
T 3oja_A 157 DTVNF-AELAASSDTLEHLNLQYNFIYDVK--G-----------------QVVFAKLKTLDLSSNKLAFMGPE--F---- 210 (487)
T ss_dssp CEEEG-GGGGGGTTTCCEEECTTSCCCEEE--C-----------------CCCCTTCCEEECCSSCCCEECGG--G----
T ss_pred CCcCh-HHHhhhCCcccEEecCCCcccccc--c-----------------cccCCCCCEEECCCCCCCCCCHh--H----
Confidence 98654 4454 7899999999999999883 2 234678888888877 222221 1
Q ss_pred hhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecC
Q 014792 347 YFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNG 413 (418)
Q Consensus 347 ~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~ 413 (418)
.....|+.|+++ +|.+..+|. .+..+++|+.|++++|++.+. .....++.++.|+.|+.
T Consensus 211 ~~l~~L~~L~Ls-~N~l~~lp~--~l~~l~~L~~L~l~~N~l~c~-----~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 211 QSAAGVTWISLR-NNKLVLIEK--ALRFSQNLEHFDLRGNGFHCG-----TLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp GGGTTCSEEECT-TSCCCEECT--TCCCCTTCCEEECTTCCBCHH-----HHHHHHTTCHHHHHHHH
T ss_pred cCCCCccEEEec-CCcCcccch--hhccCCCCCEEEcCCCCCcCc-----chHHHHHhCCCCcEEec
Confidence 112346677777 888988874 688899999999999999832 22233555666655544
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1.5e-22 Score=201.33 Aligned_cols=153 Identities=24% Similarity=0.338 Sum_probs=83.8
Q ss_pred HhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCc
Q 014792 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (418)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L 207 (418)
+..+++|++|++++|.+...++ +.. +++|++|++++|.+..+. . +..+++|++|++++|.+...++ +..+++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~-~~~-l~~L~~L~l~~n~l~~~~---~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 136 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP-LKN-LTKLVDILMNNNQIADIT---P-LANLTNLTGLTLFNNQITDIDP-LKNLTNL 136 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTT-CTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred hhhhcCCCEEECCCCccCCchh-hhc-cccCCEEECCCCccccCh---h-hcCCCCCCEEECCCCCCCCChH-HcCCCCC
Confidence 5667777777777777766654 443 367777777777766532 2 5667777777777776665443 5566666
Q ss_pred cEEEecCCCCCHHHHHHH--------------------HhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCC
Q 014792 208 RILVLNCTGVNWMQVEIL--------------------KHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDN 267 (418)
Q Consensus 208 ~~L~L~~n~l~~~~~~~~--------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n 267 (418)
++|++++|.+.. ++.+ +..+++|++|++++|.+..++ .+..+++|++|++++|
T Consensus 137 ~~L~l~~n~l~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n 209 (466)
T 1o6v_A 137 NRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-----VLAKLTNLESLIATNN 209 (466)
T ss_dssp SEEEEEEEEECC--CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSS
T ss_pred CEEECCCCccCC--ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-----hhccCCCCCEEEecCC
Confidence 666666665442 1110 234455555555555554432 1344455555555555
Q ss_pred CCCChhhhhhcCCCCCCCEEecCCCCCCcc
Q 014792 268 CIAEWSEILKLCQIRSLEQLYLNKNNLNRI 297 (418)
Q Consensus 268 ~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~ 297 (418)
.+.+..+ ++.+++|+.|++++|.++++
T Consensus 210 ~l~~~~~---~~~l~~L~~L~l~~n~l~~~ 236 (466)
T 1o6v_A 210 QISDITP---LGILTNLDELSLNGNQLKDI 236 (466)
T ss_dssp CCCCCGG---GGGCTTCCEEECCSSCCCCC
T ss_pred ccccccc---ccccCCCCEEECCCCCcccc
Confidence 5544332 33344444444444444433
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=9.1e-23 Score=193.71 Aligned_cols=247 Identities=17% Similarity=0.131 Sum_probs=158.6
Q ss_pred HHhcccccceecccCcCcCCCCC-chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCC
Q 014792 127 KFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQL 204 (418)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l 204 (418)
.+.++++|++|++++|.++...+ .+.. +++|++|+|++|.+..+ |..+ .++|++|++++|++...++ .+..+
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~l---~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l 144 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLSKNQLKEL---PEKM--PKTLQELRVHENEITKVRKSVFNGL 144 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECCSSCCSBC---CSSC--CTTCCEEECCSSCCCBBCHHHHTTC
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcC-CCCCCEEECCCCcCCcc---Chhh--cccccEEECCCCcccccCHhHhcCC
Confidence 46677777777777777777654 3444 47777777777777643 2222 2677777777777776555 36677
Q ss_pred CCccEEEecCCCCCHH-HHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCC
Q 014792 205 KSIRILVLNCTGVNWM-QVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRS 283 (418)
Q Consensus 205 ~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~ 283 (418)
++|++|++++|.+... ..+..+..+++|++|++++|.++.++.. + .++|++|++++|.+.+.++ ..+..+++
T Consensus 145 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~----~--~~~L~~L~l~~n~l~~~~~-~~~~~l~~ 217 (330)
T 1xku_A 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG----L--PPSLTELHLDGNKITKVDA-ASLKGLNN 217 (330)
T ss_dssp TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS----C--CTTCSEEECTTSCCCEECT-GGGTTCTT
T ss_pred ccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc----c--cccCCEEECCCCcCCccCH-HHhcCCCC
Confidence 7777777777776521 1233346677777777777777766543 2 2677778888877776643 45777777
Q ss_pred CCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCC--CCCCCCCccchhhhhhhhhhhccCCCCC
Q 014792 284 LEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNS--KKLPTSSHVSFVVYFLIFAFSLHASGNN 361 (418)
Q Consensus 284 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n--~~i~~~~~~~~l~~~~~~l~~l~~~~~n 361 (418)
|+.|++++|.++++.+.. +..+++|+.|++++| ..+|... .....|+.|+++ +|
T Consensus 218 L~~L~Ls~n~l~~~~~~~-----------------~~~l~~L~~L~L~~N~l~~lp~~l------~~l~~L~~L~l~-~N 273 (330)
T 1xku_A 218 LAKLGLSFNSISAVDNGS-----------------LANTPHLRELHLNNNKLVKVPGGL------ADHKYIQVVYLH-NN 273 (330)
T ss_dssp CCEEECCSSCCCEECTTT-----------------GGGSTTCCEEECCSSCCSSCCTTT------TTCSSCCEEECC-SS
T ss_pred CCEEECCCCcCceeChhh-----------------ccCCCCCCEEECCCCcCccCChhh------ccCCCcCEEECC-CC
Confidence 888888888777763222 567788888888877 4444431 111235566666 78
Q ss_pred CcCCCccccccc------CCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 362 MIEDLASIDSLD------SFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 362 ~i~~~~~~~~l~------~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
.++.++. ..+. ..+.|+.|++++||+.... ..+ .....++.++.++++.
T Consensus 274 ~i~~~~~-~~f~~~~~~~~~~~l~~l~l~~N~~~~~~--i~~--~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 274 NISAIGS-NDFCPPGYNTKKASYSGVSLFSNPVQYWE--IQP--STFRCVYVRAAVQLGN 328 (330)
T ss_dssp CCCCCCT-TSSSCSSCCTTSCCCSEEECCSSSSCGGG--SCG--GGGTTCCCGGGEEC--
T ss_pred cCCccCh-hhcCCcccccccccccceEeecCcccccc--cCc--cccccccceeEEEecc
Confidence 8887764 2332 3478889999999986321 011 1244567788887753
No 33
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=4e-22 Score=197.51 Aligned_cols=229 Identities=21% Similarity=0.175 Sum_probs=139.3
Q ss_pred HHHhcccccceecccCcCcCCCCC--c-hhhhcCCccEEEcCCCCCCChHHHHHH-hhcCCCCCEEEcCCCCCCCccC-C
Q 014792 126 DKFSKFEELTSAALPYLGVSSPGA--N-IGTIVTNLKELDLTGNLLSDWKDIGAF-GEQLPALAVLNLSNNLMSKEVT-G 200 (418)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~i~~~~~--~-~~~~~~~L~~L~Ls~n~l~~~~~l~~~-~~~l~~L~~L~Ls~n~l~~~~~-~ 200 (418)
..++++++|++|++++|.+.+..+ . +.. +++|++|+|++|.+... .|.. +..+++|++|++++|++.+..+ .
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 173 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKP-LTSLEMLVLRDNNIKKI--QPASFFLNMRRFHVLDLTFNKVKSICEED 173 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBTHHHHSSTTTT-CTTCCEEECCSSBCCSC--CCCGGGGGCTTCCEEECTTCCBSCCCTTT
T ss_pred hhccCcccCCEEeCCCCCCCccccCcccccC-cccCCEEECCCCccCcc--CcccccCCCCcccEEeCCCCcccccChhh
Confidence 344555555555555555544211 1 222 25555555555555542 1222 4555555555555555544332 1
Q ss_pred C----------------------------------CCCCCccEEEecCCCCCHHHHHHHHhc------------------
Q 014792 201 L----------------------------------PQLKSIRILVLNCTGVNWMQVEILKHS------------------ 228 (418)
Q Consensus 201 l----------------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~~------------------ 228 (418)
+ ..+++|++|++++|.+.......+...
T Consensus 174 l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 174 LLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp SGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred hhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccc
Confidence 1 134678888888888776433333221
Q ss_pred --------------------CCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEe
Q 014792 229 --------------------LPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288 (418)
Q Consensus 229 --------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~ 288 (418)
.++|++|++++|.+.+..+. .+..+++|++|+|++|.+.+.++ ..+..+++|+.|+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ 329 (455)
T 3v47_A 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS---VFSHFTDLEQLTLAQNEINKIDD-NAFWGLTHLLKLN 329 (455)
T ss_dssp CCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT---TTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEE
T ss_pred cccchhhhccCcccccccccccCceEEEecCccccccchh---hcccCCCCCEEECCCCcccccCh-hHhcCcccCCEEE
Confidence 14677777777777766544 47778888999998888887654 5677888888888
Q ss_pred cCCCCCCcccCCC--CCchhhhhccccccC-----ccccCCCCCcEEEccCC--CCCCCCCccchhhhhhhhhhhccCCC
Q 014792 289 LNKNNLNRIYYPN--NDTIHELVSAHESHE-----ESYLPFQNLCCLLLGNS--KKLPTSSHVSFVVYFLIFAFSLHASG 359 (418)
Q Consensus 289 l~~n~l~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~l~~L~~L~L~~n--~~i~~~~~~~~l~~~~~~l~~l~~~~ 359 (418)
+++|.++++.+.. ....++.++++.|.. ..+..+++|+.|+|++| ..+|... + .-...|+.|+++
T Consensus 330 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~----~~l~~L~~L~l~- 403 (455)
T 3v47_A 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI-F----DRLTSLQKIWLH- 403 (455)
T ss_dssp CCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTT-T----TTCTTCCEEECC-
T ss_pred CCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhH-h----ccCCcccEEEcc-
Confidence 8888887764322 235567777777743 45678899999999999 4554431 1 112346778887
Q ss_pred CCCc-CCCc
Q 014792 360 NNMI-EDLA 367 (418)
Q Consensus 360 ~n~i-~~~~ 367 (418)
+|.+ .+.|
T Consensus 404 ~N~l~~~~~ 412 (455)
T 3v47_A 404 TNPWDCSCP 412 (455)
T ss_dssp SSCBCCCTT
T ss_pred CCCcccCCC
Confidence 5655 4444
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=3.3e-22 Score=189.85 Aligned_cols=245 Identities=18% Similarity=0.171 Sum_probs=186.2
Q ss_pred cccceecccCcCcCCCCC-chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEE
Q 014792 132 EELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRIL 210 (418)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L 210 (418)
+.++.|++++|.++..++ .+.. +++|++|+|++|.+..+ .|..+..+++|++|++++|+++..+..+. ++|++|
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L 126 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKN-LKNLHTLILINNKISKI--SPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQEL 126 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECCSSCCCCB--CTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEE
T ss_pred CCCeEEECCCCcCCEeChhhhcc-CCCCCEEECCCCcCCee--CHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEE
Confidence 678999999999998887 4544 59999999999999873 36778999999999999999986655543 789999
Q ss_pred EecCCCCCHHHHHHHHhcCCcccEEEccCCCCCc--cCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEe
Q 014792 211 VLNCTGVNWMQVEILKHSLPALEELHLMGNSISE--ITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288 (418)
Q Consensus 211 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~ 288 (418)
++++|.+.. ..+..+..+++|++|++++|.+.. ..+. .+..+++|++|++++|.+..++. .+ .++|++|+
T Consensus 127 ~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~l~~L~~L~l~~n~l~~l~~--~~--~~~L~~L~ 198 (330)
T 1xku_A 127 RVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENG---AFQGMKKLSYIRIADTNITTIPQ--GL--PPSLTELH 198 (330)
T ss_dssp ECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGBCTT---GGGGCTTCCEEECCSSCCCSCCS--SC--CTTCSEEE
T ss_pred ECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCcChh---hccCCCCcCEEECCCCccccCCc--cc--cccCCEEE
Confidence 999999885 344556889999999999999875 3332 57888999999999999988663 22 37999999
Q ss_pred cCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCC--CCCCCCccchhhhhhhhhhhccCCCCCCcCCC
Q 014792 289 LNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSK--KLPTSSHVSFVVYFLIFAFSLHASGNNMIEDL 366 (418)
Q Consensus 289 l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~--~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~ 366 (418)
+++|.++++.+.. +..+++|+.|++++|. .++.. .+. ....|+.|+++ +|.+..+
T Consensus 199 l~~n~l~~~~~~~-----------------~~~l~~L~~L~Ls~n~l~~~~~~-~~~----~l~~L~~L~L~-~N~l~~l 255 (330)
T 1xku_A 199 LDGNKITKVDAAS-----------------LKGLNNLAKLGLSFNSISAVDNG-SLA----NTPHLRELHLN-NNKLVKV 255 (330)
T ss_dssp CTTSCCCEECTGG-----------------GTTCTTCCEEECCSSCCCEECTT-TGG----GSTTCCEEECC-SSCCSSC
T ss_pred CCCCcCCccCHHH-----------------hcCCCCCCEEECCCCcCceeChh-hcc----CCCCCCEEECC-CCcCccC
Confidence 9999998874322 6788999999999883 33221 111 12357788888 8899988
Q ss_pred cccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCc
Q 014792 367 ASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 414 (418)
Q Consensus 367 ~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 414 (418)
| ..+..+++|++|++++|++.................+.|+.|+++
T Consensus 256 p--~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~ 301 (330)
T 1xku_A 256 P--GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLF 301 (330)
T ss_dssp C--TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred C--hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEee
Confidence 8 468899999999999999986543222111111235677777765
No 35
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=7.3e-23 Score=192.52 Aligned_cols=196 Identities=25% Similarity=0.363 Sum_probs=169.7
Q ss_pred hcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCcc
Q 014792 129 SKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIR 208 (418)
Q Consensus 129 ~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~ 208 (418)
.++++|++|+++++.+..++ .+.. +++|++|+|++|.+.++. . +..+++|++|++++|++... +.+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~-l~~L~~L~L~~n~i~~~~---~-~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQY-LNNLIGLELKDNQITDLA---P-LKNLTKITELELSGNPLKNV-SAIAGLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGG-CTTCCEEECCSSCCCCCG---G-GTTCCSCCEEECCSCCCSCC-GGGTTCTTCC
T ss_pred HHcCCcCEEEeeCCCccCch-hhhc-cCCCCEEEccCCcCCCCh---h-HccCCCCCEEEccCCcCCCc-hhhcCCCCCC
Confidence 46789999999999998875 5655 499999999999999754 3 78999999999999999865 4688999999
Q ss_pred EEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEe
Q 014792 209 ILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288 (418)
Q Consensus 209 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~ 288 (418)
+|++++|.++. ++. +..+++|++|++++|.++.+++ +..+++|+.|++++|.+.+++. +..+++|+.|+
T Consensus 111 ~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~ 179 (308)
T 1h6u_A 111 TLDLTSTQITD--VTP-LAGLSNLQVLYLDLNQITNISP-----LAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLK 179 (308)
T ss_dssp EEECTTSCCCC--CGG-GTTCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEE
T ss_pred EEECCCCCCCC--chh-hcCCCCCCEEECCCCccCcCcc-----ccCCCCccEEEccCCcCCCChh---hcCCCCCCEEE
Confidence 99999999985 333 5889999999999999988763 6788999999999999998764 78899999999
Q ss_pred cCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcc
Q 014792 289 LNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLAS 368 (418)
Q Consensus 289 l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~ 368 (418)
+++|.++++.+ +..+++|+.|+++ +|.+.+++
T Consensus 180 l~~n~l~~~~~-------------------l~~l~~L~~L~L~----------------------------~N~l~~~~- 211 (308)
T 1h6u_A 180 ADDNKISDISP-------------------LASLPNLIEVHLK----------------------------NNQISDVS- 211 (308)
T ss_dssp CCSSCCCCCGG-------------------GGGCTTCCEEECT----------------------------TSCCCBCG-
T ss_pred CCCCccCcChh-------------------hcCCCCCCEEEcc----------------------------CCccCccc-
Confidence 99999988732 4678999999999 99998887
Q ss_pred cccccCCCCCceEEcCCCCCCCCC
Q 014792 369 IDSLDSFPKLMDIRLSENPVSDPG 392 (418)
Q Consensus 369 ~~~l~~~~~L~~L~l~~N~l~~~~ 392 (418)
.+..+++|+.|++++|++...+
T Consensus 212 --~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 212 --PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp --GGTTCTTCCEEEEEEEEEECCC
T ss_pred --cccCCCCCCEEEccCCeeecCC
Confidence 4889999999999999998643
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=6.8e-23 Score=208.71 Aligned_cols=89 Identities=20% Similarity=0.172 Sum_probs=73.9
Q ss_pred HHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCcc--CCCCC
Q 014792 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEV--TGLPQ 203 (418)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~--~~l~~ 203 (418)
..+..+++|++|+|++|.++.+.+.....+++|++|+|++|.+..+ |.. .+++|++|++++|+++..+ ..+..
T Consensus 70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l---p~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~ 144 (562)
T 3a79_B 70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI---SCC--PMASLRHLDLSFNDFDVLPVCKEFGN 144 (562)
T ss_dssp GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEE---CSC--CCTTCSEEECCSSCCSBCCCCGGGGG
T ss_pred hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCcc---Ccc--ccccCCEEECCCCCccccCchHhhcc
Confidence 5788999999999999999988764333359999999999999854 444 7999999999999998754 36889
Q ss_pred CCCccEEEecCCCCCH
Q 014792 204 LKSIRILVLNCTGVNW 219 (418)
Q Consensus 204 l~~L~~L~L~~n~l~~ 219 (418)
+++|++|++++|.+..
T Consensus 145 l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 145 LTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CTTCCEEEEECSBCCT
T ss_pred cCcccEEecCCCcccc
Confidence 9999999999998764
No 37
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=99.88 E-value=6.4e-23 Score=148.01 Aligned_cols=74 Identities=35% Similarity=0.719 Sum_probs=65.5
Q ss_pred CCCCCCCCEEEeCCCCceeeEEEEEeecCC-CCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccCCC
Q 014792 6 PESYKLGQRVHSANDARRIGTVKYVGEVQG-YSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (418)
Q Consensus 6 ~~~~~~g~rv~~~~~~~~~gtvr~~g~~~~-~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~~ 81 (418)
|++++||+||.+..+. +.|||||+|++++ .+|.|+|||||+|.|||||+++|++||+|. ++.|.|++++++..+
T Consensus 3 m~~i~vG~Rv~v~~~~-~~G~VryvG~v~~~~~G~wvGVelDep~GkndGsv~G~rYF~C~-~~~G~Fvr~~~v~~g 77 (84)
T 4b6m_A 3 METIHVGDRCLCRPGD-RLGSVRFVGRVASLKPGYWVGVEFDEPVGKGDGTVKGTRVFQCQ-PNYGGFLRPDQVEVG 77 (84)
T ss_dssp --CCCTTCEEEETTTT-EEEEEEEEEECTTSCSSEEEEEEESSSCCSBSSEETTEESSCCC-TTSEEEECGGGEEEC
T ss_pred ccCcccCCEEEEcCCC-eEEEEEEEecCCCCCCCEEEEEEECCCCCCcCCEECCEEEEecC-CCeEEEecHHHeEEC
Confidence 6789999999996543 6799999999987 579999999999999999999999999998 599999999998765
No 38
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Probab=99.88 E-value=8.1e-23 Score=149.57 Aligned_cols=79 Identities=33% Similarity=0.658 Sum_probs=69.8
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccCCCCcchh
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPGISLPE 86 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~~~s~~~ 86 (418)
+.++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||.|. +++|.|++++++....+|.+
T Consensus 1 d~~~vG~rv~v~g~--~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~c~-~~~G~Fvr~~~v~~~~~~~~ 77 (86)
T 2e3i_A 1 DDFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCE-PLKGIFTRPSKLTRKVQAED 77 (86)
T ss_dssp CCCCTTCEEEETTT--EEEEEEEEEECSSSSSEEEEEEESSSCSSBSSEETTEESSCCS-TTCEEEECGGGEESSCCC--
T ss_pred CCccCCCEEEECCC--cEEEEEEeeeCCCCCCcEEEEEeCCCCCccCCEECCEEeeecC-CCeEEEEcHHHcccccchhh
Confidence 36899999999774 5799999999999999999999999999999999999999998 69999999999988888876
Q ss_pred HH
Q 014792 87 AL 88 (418)
Q Consensus 87 ~l 88 (418)
+.
T Consensus 78 ~~ 79 (86)
T 2e3i_A 78 EA 79 (86)
T ss_dssp --
T ss_pred hc
Confidence 54
No 39
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=1.3e-23 Score=197.36 Aligned_cols=231 Identities=21% Similarity=0.184 Sum_probs=140.0
Q ss_pred HhcccccceecccCcCcCCCC---CchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC--CCC
Q 014792 128 FSKFEELTSAALPYLGVSSPG---ANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT--GLP 202 (418)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~---~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~--~l~ 202 (418)
+.++++|++|++++|.+...+ ..+.. +++|++|+|++|.+.. +|..+..+++|++|++++|++...++ .+.
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~L~Ls~n~i~~---l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 123 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVIT---MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCCEEECCSCSEEE---EEEEEETCTTCCEEECTTSEEESSTTTTTTT
T ss_pred hhccccCCEEECCCCccCcccCccccccc-ccccCEEECCCCcccc---ChhhcCCCCCCCEEECCCCcccccccchhhh
Confidence 567777777777777776543 23333 3777777777777664 34456677777777777777766554 466
Q ss_pred CCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCc-cCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCC
Q 014792 203 QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISE-ITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQI 281 (418)
Q Consensus 203 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l 281 (418)
.+++|++|++++|.+.. ..+..+..+++|++|++++|.+.+ ..+. .+..+++|++|++++|.+.+.++ ..+..+
T Consensus 124 ~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l 198 (306)
T 2z66_A 124 SLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQCQLEQLSP-TAFNSL 198 (306)
T ss_dssp TCTTCCEEECTTSCCEE-CSTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTSCCCEECT-TTTTTC
T ss_pred hccCCCEEECCCCcCCc-cchhhcccCcCCCEEECCCCccccccchh---HHhhCcCCCEEECCCCCcCCcCH-HHhcCC
Confidence 77777777777777654 233344667777777777777765 2222 36667777777777777776543 456677
Q ss_pred CCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCC---CCCCCCccchhhhhhhhhhhccCC
Q 014792 282 RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSK---KLPTSSHVSFVVYFLIFAFSLHAS 358 (418)
Q Consensus 282 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~---~i~~~~~~~~l~~~~~~l~~l~~~ 358 (418)
++|++|++++|.++++.... +..+++|+.|++++|. ..|.... .+...|+.|+++
T Consensus 199 ~~L~~L~L~~N~l~~~~~~~-----------------~~~l~~L~~L~L~~N~l~~~~~~~~~-----~~~~~L~~L~L~ 256 (306)
T 2z66_A 199 SSLQVLNMSHNNFFSLDTFP-----------------YKCLNSLQVLDYSLNHIMTSKKQELQ-----HFPSSLAFLNLT 256 (306)
T ss_dssp TTCCEEECTTSCCSBCCSGG-----------------GTTCTTCCEEECTTSCCCBCSSSSCC-----CCCTTCCEEECT
T ss_pred CCCCEEECCCCccCccChhh-----------------ccCcccCCEeECCCCCCcccCHHHHH-----hhhccCCEEEcc
Confidence 77777777777777663211 4556677777777662 2222110 011235556665
Q ss_pred CCCCcCCCcccc-cccCCCCCceEEcCCCCCCC
Q 014792 359 GNNMIEDLASID-SLDSFPKLMDIRLSENPVSD 390 (418)
Q Consensus 359 ~~n~i~~~~~~~-~l~~~~~L~~L~l~~N~l~~ 390 (418)
+|.+..-..+. ....+...+.+.+..+.+..
T Consensus 257 -~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C 288 (306)
T 2z66_A 257 -QNDFACTCEHQSFLQWIKDQRQLLVEVERMEC 288 (306)
T ss_dssp -TCCEECSGGGHHHHHHHHHTGGGBSCGGGCBE
T ss_pred -CCCeecccChHHHHHHHHhhhhhhcccccccc
Confidence 77764332211 12334445556666665553
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.7e-22 Score=207.21 Aligned_cols=195 Identities=15% Similarity=0.181 Sum_probs=139.7
Q ss_pred hhHH-HHHhcccccceecccCcCcCCCCC-chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC
Q 014792 122 DKIQ-DKFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT 199 (418)
Q Consensus 122 ~~l~-~~~~~l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~ 199 (418)
..+| ..+..+++|+.|+|++|.+..+++ .+.. +++|++|+|++|.+..+. |..++.+++|++|+|++|.++..++
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~ 140 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY-AHTIQKLYMGFNAIRYLP--PHVFQNVPLLTVLVLERNDLSSLPR 140 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCcCHHHHccCCCCcEEECCCCCCCCCChHHhcC-CCCCCEEECCCCcCCCCC--HHHHcCCCCCCEEEeeCCCCCCCCH
Confidence 3444 457889999999999999998877 4544 599999999999999743 5677999999999999999998877
Q ss_pred C-CCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhc
Q 014792 200 G-LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKL 278 (418)
Q Consensus 200 ~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l 278 (418)
. +..+++|++|++++|.+.. ..+..+..+++|++|++++|.++.++ +..+++|+.|++++|.+.+++
T Consensus 141 ~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~------~~~l~~L~~L~l~~n~l~~l~----- 208 (597)
T 3oja_B 141 GIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVD------LSLIPSLFHANVSYNLLSTLA----- 208 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCC------GGGCTTCSEEECCSSCCSEEE-----
T ss_pred HHhccCCCCCEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcC------hhhhhhhhhhhcccCcccccc-----
Confidence 5 6899999999999999885 34445688999999999999998864 445677777777777766532
Q ss_pred CCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccC---ccccCCCCCcEEEccCC
Q 014792 279 CQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHE---ESYLPFQNLCCLLLGNS 333 (418)
Q Consensus 279 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~L~~L~L~~n 333 (418)
..++|+.|++++|.++.+... ....+..++++.|.. ..+..+++|+.|+|++|
T Consensus 209 -~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N 264 (597)
T 3oja_B 209 -IPIAVEELDASHNSINVVRGP-VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 264 (597)
T ss_dssp -CCTTCSEEECCSSCCCEEECS-CCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS
T ss_pred -CCchhheeeccCCcccccccc-cCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC
Confidence 223455555555555544322 122344444444432 22344555666666555
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.88 E-value=1e-22 Score=195.15 Aligned_cols=229 Identities=19% Similarity=0.212 Sum_probs=176.7
Q ss_pred HHhcccccceecccCcCcCCCCCc-hhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC--CCCC
Q 014792 127 KFSKFEELTSAALPYLGVSSPGAN-IGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT--GLPQ 203 (418)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~--~l~~ 203 (418)
.+.++++|++|++++|.++...+. +.. +++|++|+|++|.++.+. +..++.+++|++|++++|++...+. .+..
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~ 147 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSS-LGSLEHLDLSYNYLSNLS--SSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 147 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCSSCC--HHHHTTCTTCSEEECTTCCCSSSCSSCSCTT
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCC-CCCCCEEECCCCcCCcCC--HhHhCCCccCCEEECCCCCCcccCchhhhcc
Confidence 578899999999999999988764 544 599999999999999743 4568999999999999999998766 5789
Q ss_pred CCCccEEEecCCC-CCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCC
Q 014792 204 LKSIRILVLNCTG-VNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIR 282 (418)
Q Consensus 204 l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~ 282 (418)
+++|++|++++|. +.. ..+..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+...+. ..+..++
T Consensus 148 l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~ 222 (353)
T 2z80_A 148 LTKLQILRVGNMDTFTK-IQRKDFAGLTFLEELEIDASDLQSYEPK---SLKSIQNVSHLILHMKQHILLLE-IFVDVTS 222 (353)
T ss_dssp CTTCCEEEEEESSSCCE-ECTTTTTTCCEEEEEEEEETTCCEECTT---TTTTCSEEEEEEEECSCSTTHHH-HHHHHTT
T ss_pred CCCCcEEECCCCccccc-cCHHHccCCCCCCEEECCCCCcCccCHH---HHhccccCCeecCCCCccccchh-hhhhhcc
Confidence 9999999999984 553 2344557899999999999999987654 58889999999999999988775 4455689
Q ss_pred CCCEEecCCCCCCcccCCCCC-----chhhhhccccccC---------ccccCCCCCcEEEccCCCCCCCCCccchhhhh
Q 014792 283 SLEQLYLNKNNLNRIYYPNND-----TIHELVSAHESHE---------ESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYF 348 (418)
Q Consensus 283 ~L~~L~l~~n~l~~~~~~~~~-----~~~~~~~~~~~~~---------~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~ 348 (418)
+|+.|++++|.+++..+.... ..+..+.+..+.. ..+..+++|+.|+++
T Consensus 223 ~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls----------------- 285 (353)
T 2z80_A 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS----------------- 285 (353)
T ss_dssp TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECC-----------------
T ss_pred cccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECC-----------------
Confidence 999999999999987433221 1111112222211 123445555666665
Q ss_pred hhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCC
Q 014792 349 LIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 392 (418)
Q Consensus 349 ~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~ 392 (418)
+|.++.+|. ..+..+++|++|++++|++.+++
T Consensus 286 -----------~N~l~~i~~-~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 286 -----------RNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp -----------SSCCCCCCT-TTTTTCTTCCEEECCSSCBCCCH
T ss_pred -----------CCCCCccCH-HHHhcCCCCCEEEeeCCCccCcC
Confidence 899998884 24689999999999999999765
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=1.1e-23 Score=198.69 Aligned_cols=222 Identities=18% Similarity=0.153 Sum_probs=180.8
Q ss_pred cccceecccCcCcCC---CCCchhhhcCCccEEEcCC-CCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCCC
Q 014792 132 EELTSAALPYLGVSS---PGANIGTIVTNLKELDLTG-NLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKS 206 (418)
Q Consensus 132 ~~L~~L~L~~~~i~~---~~~~~~~~~~~L~~L~Ls~-n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~ 206 (418)
.+++.|+|+++.+.+ ++..+..+ ++|++|+|++ |.+.+ .+|..+..+++|++|++++|++++..+ .+..+++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVG--PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEES--CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccc--cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 578899999999986 44466665 9999999995 88886 568889999999999999999986655 6889999
Q ss_pred ccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCC-CccEEeCCCCCCCChhhhhhcCCCCCCC
Q 014792 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFD-NLQLLNLEDNCIAEWSEILKLCQIRSLE 285 (418)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~l~~l~~l~~L~ 285 (418)
|++|++++|.+.. .++..+..+++|++|++++|.+++..+. .+..++ +|+.|++++|.+.+..+ ..+..++ |+
T Consensus 127 L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~~L~~L~L~~N~l~~~~~-~~~~~l~-L~ 200 (313)
T 1ogq_A 127 LVTLDFSYNALSG-TLPPSISSLPNLVGITFDGNRISGAIPD---SYGSFSKLFTSMTISRNRLTGKIP-PTFANLN-LA 200 (313)
T ss_dssp CCEEECCSSEEES-CCCGGGGGCTTCCEEECCSSCCEEECCG---GGGCCCTTCCEEECCSSEEEEECC-GGGGGCC-CS
T ss_pred CCEEeCCCCccCC-cCChHHhcCCCCCeEECcCCcccCcCCH---HHhhhhhcCcEEECcCCeeeccCC-hHHhCCc-cc
Confidence 9999999998875 3555568899999999999999854433 477777 99999999999885443 4566676 99
Q ss_pred EEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCC
Q 014792 286 QLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIED 365 (418)
Q Consensus 286 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~ 365 (418)
.|++++|.+++..+.. +..+++|+.|+++ +|.+..
T Consensus 201 ~L~Ls~N~l~~~~~~~-----------------~~~l~~L~~L~L~----------------------------~N~l~~ 235 (313)
T 1ogq_A 201 FVDLSRNMLEGDASVL-----------------FGSDKNTQKIHLA----------------------------KNSLAF 235 (313)
T ss_dssp EEECCSSEEEECCGGG-----------------CCTTSCCSEEECC----------------------------SSEECC
T ss_pred EEECcCCcccCcCCHH-----------------HhcCCCCCEEECC----------------------------CCceee
Confidence 9999999998763322 6788999999999 888875
Q ss_pred CcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 366 LASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 366 ~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
.. ..+..+++|++|++++|.+.+.. +. .++.+++|+.|+++.
T Consensus 236 ~~--~~~~~l~~L~~L~Ls~N~l~~~~----p~--~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 236 DL--GKVGLSKNLNGLDLRNNRIYGTL----PQ--GLTQLKFLHSLNVSF 277 (313)
T ss_dssp BG--GGCCCCTTCCEEECCSSCCEECC----CG--GGGGCTTCCEEECCS
T ss_pred ec--CcccccCCCCEEECcCCcccCcC----Ch--HHhcCcCCCEEECcC
Confidence 54 35788999999999999998432 22 267899999999874
No 43
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=99.88 E-value=9.5e-23 Score=144.11 Aligned_cols=70 Identities=37% Similarity=0.737 Sum_probs=64.4
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccC
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLS 79 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~ 79 (418)
+.++||+||.+.++ +.|||||+|++++.+|.|+|||||+|.|||||+++|++||.|. +++|+|++++++.
T Consensus 1 d~~~vG~rv~v~g~--~~G~VryvG~~~~~~g~w~GVeld~p~GkndGsv~G~rYF~c~-p~~G~Fv~~~kvs 70 (72)
T 3rdv_A 1 DDFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCE-PLKGIFTRPSKLT 70 (72)
T ss_dssp -CCCTTCEEEETTT--EEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCS-TTCEEEECGGGEE
T ss_pred CCcccCCEEEECCC--CEEEEEEeeeCCCCCceEEEEEECCCCCccCCEECCEEeCccC-CCCEEEecHHHcc
Confidence 36899999999875 5699999999999999999999999999999999999999998 6999999998765
No 44
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=2.9e-22 Score=185.32 Aligned_cols=208 Identities=21% Similarity=0.204 Sum_probs=159.1
Q ss_pred cccceecccCcCcCCCCC-chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCCCccE
Q 014792 132 EELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRI 209 (418)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~ 209 (418)
++|++|++++|.++..++ .+.. +++|++|+|++|.+..+. +..+..+++|++|++++|++...++ .+..+++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTT-CTTCSEEECTTCCCCEEC--TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCccEEECCCCcccccCHhHhcc-ccCCcEEECCCCcCCccC--HHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 468889999998888776 4444 489999999999888632 4567888999999999999887765 5788899999
Q ss_pred EEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCC----
Q 014792 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLE---- 285 (418)
Q Consensus 210 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~---- 285 (418)
|++++|.+... .+..+..+++|++|++++|.++.... +..+..+++|++|++++|.+++.+. ..+..+++|+
T Consensus 105 L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~l--~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~l~l 180 (276)
T 2z62_A 105 LVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKL--PEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNL 180 (276)
T ss_dssp EECTTSCCCCS-TTCCCTTCTTCCEEECCSSCCCCCCC--CGGGGGCTTCCEEECCSSCCCEECG-GGGHHHHTCTTCCE
T ss_pred EECCCCCcccc-CchhcccCCCCCEEECcCCccceecC--chhhccCCCCCEEECCCCCCCcCCH-HHhhhhhhccccce
Confidence 99998887742 22234678899999999998887431 1257788899999999998887653 3444444444
Q ss_pred EEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCC
Q 014792 286 QLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIED 365 (418)
Q Consensus 286 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~ 365 (418)
.|++++|.++.+.+. .....+|+.|+++ +|.++.
T Consensus 181 ~L~ls~n~l~~~~~~------------------~~~~~~L~~L~L~----------------------------~n~l~~ 214 (276)
T 2z62_A 181 SLDLSLNPMNFIQPG------------------AFKEIRLKELALD----------------------------TNQLKS 214 (276)
T ss_dssp EEECCSSCCCEECTT------------------SSCSCCEEEEECC----------------------------SSCCSC
T ss_pred eeecCCCcccccCcc------------------ccCCCcccEEECC----------------------------CCceee
Confidence 889999998887322 2333479999999 999998
Q ss_pred CcccccccCCCCCceEEcCCCCCCCCCC
Q 014792 366 LASIDSLDSFPKLMDIRLSENPVSDPGR 393 (418)
Q Consensus 366 ~~~~~~l~~~~~L~~L~l~~N~l~~~~~ 393 (418)
++. ..+..+++|++|++++|++..++.
T Consensus 215 ~~~-~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 215 VPD-GIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCT-TTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cCH-hHhcccccccEEEccCCcccccCC
Confidence 875 457889999999999999998763
No 45
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.88 E-value=5.1e-23 Score=153.70 Aligned_cols=87 Identities=26% Similarity=0.522 Sum_probs=68.1
Q ss_pred CCCCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccCCCCcc
Q 014792 5 NPESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPGISL 84 (418)
Q Consensus 5 ~~~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~~~s~ 84 (418)
.+..++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. ++.|.|++++++....++
T Consensus 7 ~~~~~~vG~rV~V~g~--~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~G~Fv~~~~v~~~~~~ 83 (96)
T 2z0w_A 7 GEGELRLGERVLVVGQ--RLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCS-PRYGIFAPPSRVQRVTDS 83 (96)
T ss_dssp ----CCTTCCCCCCCC--CCEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESSCCC-TTSEEEECGGGCCCTTC-
T ss_pred CcccCCCCCEEEECCC--cEEEEEEeccCCCCCCeEEEEEeCCCCCCCCCEECCEEeeecC-CCeEEEEcHHHceeccch
Confidence 4567999999999774 5699999999999999999999999999999999999999996 699999999999998889
Q ss_pred hhHHhhhccC
Q 014792 85 PEALRVRYRG 94 (418)
Q Consensus 85 ~~~l~~~y~~ 94 (418)
.+++.+.+..
T Consensus 84 ~~~~~e~~~~ 93 (96)
T 2z0w_A 84 LDTLSEISGP 93 (96)
T ss_dssp ----------
T ss_pred hhhhhhhccc
Confidence 8888776643
No 46
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=2.3e-22 Score=200.13 Aligned_cols=207 Identities=25% Similarity=0.288 Sum_probs=106.9
Q ss_pred cCCCCCEEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCc
Q 014792 180 QLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNL 259 (418)
Q Consensus 180 ~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 259 (418)
.+++|++|++++|.+... +.+..+++|++|++++|.+.... . ++.+++|++|++++|.++.++ .+..+++|
T Consensus 175 ~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L 245 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT--P-LGILTNLDELSLNGNQLKDIG-----TLASLTNL 245 (466)
T ss_dssp TCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG--G-GGGCTTCCEEECCSSCCCCCG-----GGGGCTTC
T ss_pred cCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCcccccc--c-ccccCCCCEEECCCCCcccch-----hhhcCCCC
Confidence 334444444444444322 12334444444444444443211 1 234445555555555444432 24445555
Q ss_pred cEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCcc---ccCCCCCcEEEccCCCCC
Q 014792 260 QLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEES---YLPFQNLCCLLLGNSKKL 336 (418)
Q Consensus 260 ~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~L~~L~L~~n~~i 336 (418)
+.|++++|.+.+.++ +..+++|+.|++++|.++++.+......++.++++.+.... +..+++|+.|++++|. +
T Consensus 246 ~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~-l 321 (466)
T 1o6v_A 246 TDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN-I 321 (466)
T ss_dssp SEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC-C
T ss_pred CEEECCCCccccchh---hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCc-C
Confidence 566666555555432 45555666666666666555332233344455555543222 3456667777777662 1
Q ss_pred CCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 337 PTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 337 ~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
...... .....|+.|+++ +|.+.+++ .+..+++|+.|++++|++.+. .+ ++.+++|+.|+++.
T Consensus 322 ~~~~~~----~~l~~L~~L~l~-~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~----~~----~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 322 SDISPV----SSLTKLQRLFFY-NNKVSDVS---SLANLTNINWLSAGHNQISDL----TP----LANLTRITQLGLND 384 (466)
T ss_dssp SCCGGG----GGCTTCCEEECC-SSCCCCCG---GGTTCTTCCEEECCSSCCCBC----GG----GTTCTTCCEEECCC
T ss_pred CCchhh----ccCccCCEeECC-CCccCCch---hhccCCCCCEEeCCCCccCcc----ch----hhcCCCCCEEeccC
Confidence 111111 122345666776 66776664 577788888888888887642 22 56778888887653
No 47
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=2e-22 Score=212.82 Aligned_cols=253 Identities=14% Similarity=0.141 Sum_probs=148.0
Q ss_pred hhHHHHHhcccccceecccCcC-cCC--CCCchhhh------cCCccEEEcCCCCCCChHHHHH--HhhcCCCCCEEEcC
Q 014792 122 DKIQDKFSKFEELTSAALPYLG-VSS--PGANIGTI------VTNLKELDLTGNLLSDWKDIGA--FGEQLPALAVLNLS 190 (418)
Q Consensus 122 ~~l~~~~~~l~~L~~L~L~~~~-i~~--~~~~~~~~------~~~L~~L~Ls~n~l~~~~~l~~--~~~~l~~L~~L~Ls 190 (418)
..+|..+.++++|+.|+|++|. +++ ++..+..+ +++|++|+|++|.+.. +|. .++.+++|++|+++
T Consensus 505 ~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~---ip~~~~l~~L~~L~~L~Ls 581 (876)
T 4ecn_A 505 TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE---FPASASLQKMVKLGLLDCV 581 (876)
T ss_dssp CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB---CCCHHHHTTCTTCCEEECT
T ss_pred ccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc---cCChhhhhcCCCCCEEECC
Confidence 3567777888888888888886 665 33333332 2478888888888773 455 67788888888888
Q ss_pred CCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCc-ccEEEccCCCCCccCCCC--------------------
Q 014792 191 NNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPA-LEELHLMGNSISEITPVS-------------------- 249 (418)
Q Consensus 191 ~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~-------------------- 249 (418)
+|+++ .+|.+..+++|++|++++|.+. .++..+..+++ |++|++++|.++.++...
T Consensus 582 ~N~l~-~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 582 HNKVR-HLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp TSCCC-BCCCCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred CCCcc-cchhhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCC
Confidence 88877 3347777777888888887776 45555566777 777777777776554320
Q ss_pred -----CCccC--CCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCC---------chhhhhcccc
Q 014792 250 -----SPIVQ--GFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNND---------TIHELVSAHE 313 (418)
Q Consensus 250 -----~~~~~--~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~---------~~~~~~~~~~ 313 (418)
+..+. .+++|+.|+|++|.+..++. ..+..+++|+.|++++|.|+.+...... ..++.++++.
T Consensus 659 ~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~-~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~ 737 (876)
T 4ecn_A 659 EGRNISCSMDDYKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF 737 (876)
T ss_dssp TSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH-HHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCS
T ss_pred ccccchhhhccccCCCcCEEEccCCcCCccCH-HHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCC
Confidence 00111 12255566666665555443 2334566777777777777655221111 0444555555
Q ss_pred ccCcc----cc--CCCCCcEEEccCC--CCCCCCCccchhhhhhhhhhhccCCC-----CCCc-CCCcccccccCCCCCc
Q 014792 314 SHEES----YL--PFQNLCCLLLGNS--KKLPTSSHVSFVVYFLIFAFSLHASG-----NNMI-EDLASIDSLDSFPKLM 379 (418)
Q Consensus 314 ~~~~~----~~--~l~~L~~L~L~~n--~~i~~~~~~~~l~~~~~~l~~l~~~~-----~n~i-~~~~~~~~l~~~~~L~ 379 (418)
|.+.. +. .+++|+.|+|++| ..+|.... -..+|+.|++++ +|.+ +.+| ..+..+++|+
T Consensus 738 N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~------~L~~L~~L~Ls~N~~ls~N~l~~~ip--~~l~~L~~L~ 809 (876)
T 4ecn_A 738 NKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL------NSSQLKAFGIRHQRDAEGNRILRQWP--TGITTCPSLI 809 (876)
T ss_dssp SCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG------GCTTCCEEECCCCBCTTCCBCCCCCC--TTGGGCSSCC
T ss_pred CCCccchHHhhhccCCCcCEEEeCCCCCCccchhhh------cCCCCCEEECCCCCCcccccccccCh--HHHhcCCCCC
Confidence 54322 22 5566666666666 23332211 122345555542 2332 3444 3566667777
Q ss_pred eEEcCCCCCC
Q 014792 380 DIRLSENPVS 389 (418)
Q Consensus 380 ~L~l~~N~l~ 389 (418)
+|+|++|++.
T Consensus 810 ~L~Ls~N~L~ 819 (876)
T 4ecn_A 810 QLQIGSNDIR 819 (876)
T ss_dssp EEECCSSCCC
T ss_pred EEECCCCCCC
Confidence 7777777664
No 48
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.5e-21 Score=193.42 Aligned_cols=254 Identities=20% Similarity=0.165 Sum_probs=149.2
Q ss_pred HHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCC
Q 014792 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206 (418)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~ 206 (418)
.++.+++|++|++++|.+++++ +..+ ++|++|++++|.+.++ + ++.+++|++|++++|++++. .+..+++
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~--~~~l-~~L~~L~Ls~N~l~~~---~--~~~l~~L~~L~L~~N~l~~l--~~~~l~~ 128 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLD--LSQN-TNLTYLACDSNKLTNL---D--VTPLTKLTYLNCDTNKLTKL--DVSQNPL 128 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCC--CTTC-TTCSEEECCSSCCSCC---C--CTTCTTCCEEECCSSCCSCC--CCTTCTT
T ss_pred hhcccCCCCEEEccCCcCCeEc--cccC-CCCCEEECcCCCCcee---e--cCCCCcCCEEECCCCcCCee--cCCCCCc
Confidence 4677788888888888877763 4443 7888888888887764 2 57777888888888877764 2667777
Q ss_pred ccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCE
Q 014792 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (418)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~ 286 (418)
|++|++++|.++.. + ++.+++|++|++++|...+.. .+..+++|+.|++++|.+++++ +..+++|+.
T Consensus 129 L~~L~l~~N~l~~l--~--l~~l~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~ls~n~l~~l~----l~~l~~L~~ 195 (457)
T 3bz5_A 129 LTYLNCARNTLTEI--D--VSHNTQLTELDCHLNKKITKL-----DVTPQTQLTTLDCSFNKITELD----VSQNKLLNR 195 (457)
T ss_dssp CCEEECTTSCCSCC--C--CTTCTTCCEEECTTCSCCCCC-----CCTTCTTCCEEECCSSCCCCCC----CTTCTTCCE
T ss_pred CCEEECCCCcccee--c--cccCCcCCEEECCCCCccccc-----ccccCCcCCEEECCCCccceec----cccCCCCCE
Confidence 77777777777642 1 356666777777666322211 1445566666666666666533 445555666
Q ss_pred EecCCCCCCcccCCCCCchhhhhccccccCcc--ccCCCCCcEEEccCC--CCCCCCCccchhhh---------------
Q 014792 287 LYLNKNNLNRIYYPNNDTIHELVSAHESHEES--YLPFQNLCCLLLGNS--KKLPTSSHVSFVVY--------------- 347 (418)
Q Consensus 287 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~L~~L~L~~n--~~i~~~~~~~~l~~--------------- 347 (418)
|++++|.++++. -.....++.++++.|.... +..+++|+.|++++| +.+|. ..++.++.
T Consensus 196 L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~-~~l~~L~~L~l~~n~L~~L~l~~ 273 (457)
T 3bz5_A 196 LNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDV-STLSKLTTLHCIQTDLLEIDLTH 273 (457)
T ss_dssp EECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCC-TTCTTCCEEECTTCCCSCCCCTT
T ss_pred EECcCCcCCeec-cccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCH-HHCCCCCEEeccCCCCCEEECCC
Confidence 666665555542 1222344444555443322 234555666666655 22221 11111110
Q ss_pred ----------hhhhhhhccCCCCCCcCCCcc----cc--cccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceee
Q 014792 348 ----------FLIFAFSLHASGNNMIEDLAS----ID--SLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKIL 411 (418)
Q Consensus 348 ----------~~~~l~~l~~~~~n~i~~~~~----~~--~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~L 411 (418)
....|+.|+++++..++.+|. +. .+..+++|++|++++|.++... ++.+++|+.|
T Consensus 274 n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~---------l~~l~~L~~L 344 (457)
T 3bz5_A 274 NTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD---------VSHNTKLKSL 344 (457)
T ss_dssp CTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC---------CTTCTTCSEE
T ss_pred CccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc---------cccCCcCcEE
Confidence 113466666664433333221 10 2566778888888888887421 5677888888
Q ss_pred cCc
Q 014792 412 NGS 414 (418)
Q Consensus 412 n~s 414 (418)
+++
T Consensus 345 ~l~ 347 (457)
T 3bz5_A 345 SCV 347 (457)
T ss_dssp ECC
T ss_pred ECC
Confidence 775
No 49
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=1e-22 Score=209.14 Aligned_cols=247 Identities=21% Similarity=0.119 Sum_probs=166.4
Q ss_pred ccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCCCccEEE
Q 014792 133 ELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILV 211 (418)
Q Consensus 133 ~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~ 211 (418)
.|+.+++++|.+..+++.....+++|++|++++|.+.. +|..+..+++|++|++++|++...++ .+..+++|++|+
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE---LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC---CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC---CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence 56677777777777766433334777777777777774 45566777777777777777776655 566777777777
Q ss_pred ecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccC--CCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEec
Q 014792 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEIT--PVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYL 289 (418)
Q Consensus 212 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l 289 (418)
+++|.+........+..+++|++|++++|.+.... +. .+..+++|++|++++|.+.+..+ ..+..+++|+.|++
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL---QLRNLSHLQSLNLSYNEPLSLKT-EAFKECPQLELLDL 407 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTT---TTTTCTTCCEEECCSCSCEEECT-TTTTTCTTCSEEEC
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCCccccccCcch---hcccCCCCCEEECCCCcCCcCCH-HHhcCCccCCeEEC
Confidence 77776653222333466777777777777776653 22 36667777777777777766543 45667777777777
Q ss_pred CCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCC---CCCCCCccchhhhhhhhhhhccCCCCCCcCC-
Q 014792 290 NKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSK---KLPTSSHVSFVVYFLIFAFSLHASGNNMIED- 365 (418)
Q Consensus 290 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~---~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~- 365 (418)
++|.++...++.. +..+++|+.|++++|. ..|.... -...|+.|+++ +|.+.+
T Consensus 408 ~~n~l~~~~~~~~----------------~~~l~~L~~L~l~~n~l~~~~~~~~~------~l~~L~~L~L~-~n~l~~~ 464 (606)
T 3t6q_A 408 AFTRLKVKDAQSP----------------FQNLHLLKVLNLSHSLLDISSEQLFD------GLPALQHLNLQ-GNHFPKG 464 (606)
T ss_dssp TTCCEECCTTCCT----------------TTTCTTCCEEECTTCCCBTTCTTTTT------TCTTCCEEECT-TCBCGGG
T ss_pred CCCcCCCcccchh----------------hhCcccCCEEECCCCccCCcCHHHHh------CCCCCCEEECC-CCCCCcc
Confidence 7777776644332 5678888999998882 2222211 12346677777 777754
Q ss_pred -CcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 366 -LASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 366 -~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
++....+..+++|++|++++|.+.... + ..++.+++|+.|+++.
T Consensus 465 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~----~--~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 465 NIQKTNSLQTLGRLEILVLSFCDLSSID----Q--HAFTSLKMMNHVDLSH 509 (606)
T ss_dssp EECSSCGGGGCTTCCEEECTTSCCCEEC----T--TTTTTCTTCCEEECCS
T ss_pred ccccchhhccCCCccEEECCCCccCccC----h--hhhccccCCCEEECCC
Confidence 232246888999999999999998432 1 2356789999999874
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=3.6e-22 Score=189.80 Aligned_cols=261 Identities=19% Similarity=0.204 Sum_probs=131.3
Q ss_pred ccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCCCccEEE
Q 014792 133 ELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILV 211 (418)
Q Consensus 133 ~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~ 211 (418)
+++.++++++.+..++..+. ++|++|+|++|.+..+. +..+..+++|++|++++|+++...+ .+..+++|++|+
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS---PDTTLLDLQNNDISELR--KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC---TTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCccccCCCCC---CCCeEEECCCCcCCccC--HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 34555555555544443331 44555555555554321 2344455555555555555554433 344555555555
Q ss_pred ecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhh-hhcCCCCCCCEEecC
Q 014792 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI-LKLCQIRSLEQLYLN 290 (418)
Q Consensus 212 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l-~~l~~l~~L~~L~l~ 290 (418)
+++|.+. .++.. ..++|++|++++|.+..+++. .+..+++|+.|++++|.+...... ..+..+ +|+.|+++
T Consensus 109 L~~n~l~--~l~~~--~~~~L~~L~l~~n~i~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~ 180 (332)
T 2ft3_A 109 ISKNHLV--EIPPN--LPSSLVELRIHDNRIRKVPKG---VFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS 180 (332)
T ss_dssp CCSSCCC--SCCSS--CCTTCCEEECCSSCCCCCCSG---GGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred CCCCcCC--ccCcc--ccccCCEEECCCCccCccCHh---HhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence 5555444 12211 114455555555555444332 244445555555555554321100 223333 45555555
Q ss_pred CCCCCcccCCCCCchhhhhccccccC-----ccccCCCCCcEEEccCC--CCCCCCCccchhhhhhhhhhhccCCCCCCc
Q 014792 291 KNNLNRIYYPNNDTIHELVSAHESHE-----ESYLPFQNLCCLLLGNS--KKLPTSSHVSFVVYFLIFAFSLHASGNNMI 363 (418)
Q Consensus 291 ~n~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~L~~L~L~~n--~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i 363 (418)
+|.++.+.. .....++.++++.|.. ..+..+++|+.|++++| ..++... + .....|+.|+++ +|.+
T Consensus 181 ~n~l~~l~~-~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~-~----~~l~~L~~L~L~-~N~l 253 (332)
T 2ft3_A 181 EAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS-L----SFLPTLRELHLD-NNKL 253 (332)
T ss_dssp SSBCSSCCS-SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG-G----GGCTTCCEEECC-SSCC
T ss_pred CCCCCccCc-cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH-h----hCCCCCCEEECC-CCcC
Confidence 555444321 1112333444444322 23567788888888887 3333210 1 112346677777 8889
Q ss_pred CCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 364 EDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 364 ~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
..+| ..+..+++|++|++++|+++................+.|+.|+++.
T Consensus 254 ~~lp--~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 254 SRVP--AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp CBCC--TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred eecC--hhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeec
Confidence 8888 3688999999999999999865422211111111246778887653
No 51
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.87 E-value=2.9e-23 Score=196.05 Aligned_cols=233 Identities=21% Similarity=0.185 Sum_probs=185.3
Q ss_pred cceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEEec
Q 014792 134 LTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLN 213 (418)
Q Consensus 134 L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~ 213 (418)
++..+++.+.+......+...+++|++|+|++|.+..+ .|..+..+++|++|++++|.+++.++ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI--SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCC--CHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcC--CHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 44556666655544444555568999999999999984 36788999999999999999987665 8899999999999
Q ss_pred CCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCC
Q 014792 214 CTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNN 293 (418)
Q Consensus 214 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~ 293 (418)
+|.++. + ...++|++|++++|.++.++.. .+++|+.|++++|.++..++ ..+..+++|++|++++|.
T Consensus 89 ~n~l~~--l----~~~~~L~~L~l~~n~l~~~~~~------~~~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 89 NNYVQE--L----LVGPSIETLHAANNNISRVSCS------RGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp SSEEEE--E----EECTTCCEEECCSSCCSEEEEC------CCSSCEEEECCSSCCCSGGG-BCTGGGSSEEEEECTTSC
T ss_pred CCcccc--c----cCCCCcCEEECCCCccCCcCcc------ccCCCCEEECCCCCCCCccc-hhhhccCCCCEEECCCCC
Confidence 998874 2 3568999999999999987643 36889999999999999875 567889999999999999
Q ss_pred CCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCC--CCCCCCCccchhhhhhhhhhhccCCCCCCcCCCccccc
Q 014792 294 LNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNS--KKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDS 371 (418)
Q Consensus 294 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n--~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~ 371 (418)
++++.+... ...+++|+.|+|++| ..++.... ...|+.|+++ +|.+..++. .
T Consensus 156 l~~~~~~~~----------------~~~l~~L~~L~L~~N~l~~~~~~~~-------l~~L~~L~Ls-~N~l~~l~~--~ 209 (317)
T 3o53_A 156 IDTVNFAEL----------------AASSDTLEHLNLQYNFIYDVKGQVV-------FAKLKTLDLS-SNKLAFMGP--E 209 (317)
T ss_dssp CCEEEGGGG----------------GGGTTTCCEEECTTSCCCEEECCCC-------CTTCCEEECC-SSCCCEECG--G
T ss_pred CCcccHHHH----------------hhccCcCCEEECCCCcCcccccccc-------cccCCEEECC-CCcCCcchh--h
Confidence 998754432 346899999999998 34433332 3457788888 889988874 5
Q ss_pred ccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 372 LDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 372 l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
+..+++|++|++++|.+...+ . .+..+++|+.|+++.
T Consensus 210 ~~~l~~L~~L~L~~N~l~~l~-----~--~~~~l~~L~~L~l~~ 246 (317)
T 3o53_A 210 FQSAAGVTWISLRNNKLVLIE-----K--ALRFSQNLEHFDLRG 246 (317)
T ss_dssp GGGGTTCSEEECTTSCCCEEC-----T--TCCCCTTCCEEECTT
T ss_pred hcccCcccEEECcCCcccchh-----h--HhhcCCCCCEEEccC
Confidence 889999999999999998432 1 256789999999874
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=2.9e-22 Score=190.38 Aligned_cols=247 Identities=17% Similarity=0.111 Sum_probs=150.9
Q ss_pred HHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCC
Q 014792 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLK 205 (418)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~ 205 (418)
.+.++++|++|++++|.++...+.....+++|++|+|++|.+..+ |..+ .++|++|++++|++...++ .+..++
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l---~~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~ 147 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI---PPNL--PSSLVELRIHDNRIRKVPKGVFSGLR 147 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC---CSSC--CTTCCEEECCSSCCCCCCSGGGSSCS
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc---Cccc--cccCCEEECCCCccCccCHhHhCCCc
Confidence 456666677777776666665442222236677777776666642 2222 2566777777766665554 256666
Q ss_pred CccEEEecCCCCCHH-HHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCC
Q 014792 206 SIRILVLNCTGVNWM-QVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSL 284 (418)
Q Consensus 206 ~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L 284 (418)
+|++|++++|.++.. ..+..+..+ +|++|++++|.++.++.. + .++|+.|++++|.+.+.++ ..+..+++|
T Consensus 148 ~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~----~--~~~L~~L~l~~n~i~~~~~-~~l~~l~~L 219 (332)
T 2ft3_A 148 NMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD----L--PETLNELHLDHNKIQAIEL-EDLLRYSKL 219 (332)
T ss_dssp SCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS----S--CSSCSCCBCCSSCCCCCCT-TSSTTCTTC
T ss_pred cCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc----c--cCCCCEEECCCCcCCccCH-HHhcCCCCC
Confidence 677777776666421 112222333 666666666666665433 1 1567777777777766553 456667777
Q ss_pred CEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCC--CCCCCCCccchhhhhhhhhhhccCCCCCC
Q 014792 285 EQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNS--KKLPTSSHVSFVVYFLIFAFSLHASGNNM 362 (418)
Q Consensus 285 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n--~~i~~~~~~~~l~~~~~~l~~l~~~~~n~ 362 (418)
+.|++++|.++++.+. .+..+++|+.|++++| ..+|... .-...|+.|+++ +|.
T Consensus 220 ~~L~L~~N~l~~~~~~-----------------~~~~l~~L~~L~L~~N~l~~lp~~l------~~l~~L~~L~l~-~N~ 275 (332)
T 2ft3_A 220 YRLGLGHNQIRMIENG-----------------SLSFLPTLRELHLDNNKLSRVPAGL------PDLKLLQVVYLH-TNN 275 (332)
T ss_dssp SCCBCCSSCCCCCCTT-----------------GGGGCTTCCEEECCSSCCCBCCTTG------GGCTTCCEEECC-SSC
T ss_pred CEEECCCCcCCcCChh-----------------HhhCCCCCCEEECCCCcCeecChhh------hcCccCCEEECC-CCC
Confidence 7777777777665321 2577889999999988 4555431 122346777887 888
Q ss_pred cCCCcccccccC------CCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 363 IEDLASIDSLDS------FPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 363 i~~~~~~~~l~~------~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
++.++. ..+.. .+.|+.|++++||+.... ..+ ..+..+++|+.|+++.
T Consensus 276 l~~~~~-~~~~~~~~~~~~~~l~~L~l~~N~~~~~~--~~~--~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 276 ITKVGV-NDFCPVGFGVKRAYYNGISLFNNPVPYWE--VQP--ATFRCVTDRLAIQFGN 329 (332)
T ss_dssp CCBCCT-TSSSCSSCCSSSCCBSEEECCSSSSCGGG--SCG--GGGTTBCCSTTEEC--
T ss_pred CCccCh-hHccccccccccccccceEeecCcccccc--cCc--ccccccchhhhhhccc
Confidence 988864 23332 578999999999987321 011 2355688899888764
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=4.6e-21 Score=189.96 Aligned_cols=249 Identities=16% Similarity=0.122 Sum_probs=185.5
Q ss_pred HhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCc
Q 014792 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (418)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L 207 (418)
++++++|++|++++|.+++.+ .+..+ ++|++|+|++|.++++ | ++.+++|++|++++|++++. .+..+++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l-~~L~~L~Ls~n~l~~~---~--~~~l~~L~~L~Ls~N~l~~~--~~~~l~~L 108 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKL-TGLTKLICTSNNITTL---D--LSQNTNLTYLACDSNKLTNL--DVTPLTKL 108 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGC-TTCSEEECCSSCCSCC---C--CTTCTTCSEEECCSSCCSCC--CCTTCTTC
T ss_pred hhHcCCCCEEEccCCCcccCh-hhccc-CCCCEEEccCCcCCeE---c--cccCCCCCEEECcCCCCcee--ecCCCCcC
Confidence 567899999999999999875 66664 9999999999999974 3 78999999999999999976 38899999
Q ss_pred cEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEE
Q 014792 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287 (418)
Q Consensus 208 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L 287 (418)
++|++++|.++. ++ ++.+++|++|++++|.+++++ ++.+++|++|++++|...+.. .+..+++|+.|
T Consensus 109 ~~L~L~~N~l~~--l~--~~~l~~L~~L~l~~N~l~~l~------l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L 175 (457)
T 3bz5_A 109 TYLNCDTNKLTK--LD--VSQNPLLTYLNCARNTLTEID------VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTL 175 (457)
T ss_dssp CEEECCSSCCSC--CC--CTTCTTCCEEECTTSCCSCCC------CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEE
T ss_pred CEEECCCCcCCe--ec--CCCCCcCCEEECCCCccceec------cccCCcCCEEECCCCCccccc---ccccCCcCCEE
Confidence 999999999985 33 588999999999999999863 678899999999999543321 37789999999
Q ss_pred ecCCCCCCcccCCCCCchhhhhccccccCc--cccCCCCCcEEEccCC--CCCCCCCccchhhhhhhhhhhccCCCCCCc
Q 014792 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEE--SYLPFQNLCCLLLGNS--KKLPTSSHVSFVVYFLIFAFSLHASGNNMI 363 (418)
Q Consensus 288 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~L~~L~L~~n--~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i 363 (418)
++++|.++++. ......++.++++.|... .+..+++|+.|++++| +.+| ...+ ..|+.|+++ +|.+
T Consensus 176 ~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip-~~~l-------~~L~~L~l~-~N~l 245 (457)
T 3bz5_A 176 DCSFNKITELD-VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID-VTPL-------TQLTYFDCS-VNPL 245 (457)
T ss_dssp ECCSSCCCCCC-CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-CTTC-------TTCSEEECC-SSCC
T ss_pred ECCCCccceec-cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC-cccc-------CCCCEEEee-CCcC
Confidence 99999999974 233355666777776543 3556788888888877 3454 2222 245666776 7777
Q ss_pred CCCcccccccCCCCCceEEcCCCCCCCCCC------cchhHHHHHHhhCCceeecCccc
Q 014792 364 EDLASIDSLDSFPKLMDIRLSENPVSDPGR------GGISRFAIIARLGKIKILNGSEV 416 (418)
Q Consensus 364 ~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~------~~~~~~~~i~~l~~L~~Ln~s~i 416 (418)
..++ +..+++|+.|++++|.+..... +..+ .+.+++|+.|+++.-
T Consensus 246 ~~~~----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 246 TELD----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHN 296 (457)
T ss_dssp SCCC----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTC
T ss_pred CCcC----HHHCCCCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCC
Confidence 7765 3345555544444444432110 1122 356788888888753
No 54
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=99.87 E-value=2.7e-22 Score=149.92 Aligned_cols=77 Identities=39% Similarity=0.734 Sum_probs=68.3
Q ss_pred CCCCCCCEEEeC--CCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccCCCCcc
Q 014792 7 ESYKLGQRVHSA--NDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPGISL 84 (418)
Q Consensus 7 ~~~~~g~rv~~~--~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~~~s~ 84 (418)
..+.||+||.+. +...+.|||||+|++++.+|.|+|||||+|.|||||+++|++||.|. +++|.|++++++..+ +|
T Consensus 10 ~~~~vG~rv~V~~~g~~~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~G~Fvr~~~v~~g-df 87 (95)
T 1lpl_A 10 KNIMVGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCD-PKYGGFVRPVDVKVG-DF 87 (95)
T ss_dssp HTCCTTCEEEECCTTSCCEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCC-TTSEEEECGGGEEES-CC
T ss_pred hcCCCCCEEEEccCCCCceEEEEEEecccCCCCCEEEEEEccCCCCccCCEECCEEEeEeC-CCEEEEEcHHHceEC-CC
Confidence 368999999996 31137799999999999999999999999999999999999999995 699999999998877 55
Q ss_pred h
Q 014792 85 P 85 (418)
Q Consensus 85 ~ 85 (418)
+
T Consensus 88 p 88 (95)
T 1lpl_A 88 P 88 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 55
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=3.4e-21 Score=177.82 Aligned_cols=204 Identities=20% Similarity=0.239 Sum_probs=150.1
Q ss_pred ccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEE
Q 014792 131 FEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRIL 210 (418)
Q Consensus 131 l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L 210 (418)
+..+..+++..+.+.+.. ....+ ++|+.|++++|.+..++ .+..+++|++|++++|.+.+. +.+..+++|++|
T Consensus 18 ~~~l~~l~l~~~~~~~~~-~~~~l-~~L~~L~l~~~~i~~~~----~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L 90 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAV-TQNEL-NSIDQIIANNSDIKSVQ----GIQYLPNVRYLALGGNKLHDI-SALKELTNLTYL 90 (272)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHH-TTCCEEECTTSCCCCCT----TGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEE
T ss_pred HHHHHHHHhcCccccccc-ccccc-cceeeeeeCCCCccccc----ccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEE
Confidence 344555666666665543 34444 88888888888887643 357788888888888888764 467778888888
Q ss_pred EecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecC
Q 014792 211 VLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLN 290 (418)
Q Consensus 211 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~ 290 (418)
++++|.++. ..+..+..+++|++|++++|.++.+++. .+..+++|++|++++|.+++.++ ..+..+++|+.|+++
T Consensus 91 ~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~ 165 (272)
T 3rfs_A 91 ILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDG---VFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLS 165 (272)
T ss_dssp ECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECC
T ss_pred ECCCCccCc-cChhHhcCCcCCCEEECCCCcCCccCHH---HhccCCCCCEEECCCCccCccCH-HHhccCccCCEEECC
Confidence 888888774 2333346788888888888888877654 46778888888888888887664 456778888888888
Q ss_pred CCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccc
Q 014792 291 KNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASID 370 (418)
Q Consensus 291 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~ 370 (418)
+|.++++.+.. +..+++|+.|+++ +|.+..++. .
T Consensus 166 ~n~l~~~~~~~-----------------~~~l~~L~~L~L~----------------------------~N~l~~~~~-~ 199 (272)
T 3rfs_A 166 YNQLQSLPEGV-----------------FDKLTQLKDLRLY----------------------------QNQLKSVPD-G 199 (272)
T ss_dssp SSCCCCCCTTT-----------------TTTCTTCCEEECC----------------------------SSCCSCCCT-T
T ss_pred CCCcCccCHHH-----------------hcCCccCCEEECC----------------------------CCcCCccCH-H
Confidence 88888763221 5677888888888 888877764 3
Q ss_pred cccCCCCCceEEcCCCCCCCCC
Q 014792 371 SLDSFPKLMDIRLSENPVSDPG 392 (418)
Q Consensus 371 ~l~~~~~L~~L~l~~N~l~~~~ 392 (418)
.+..+++|+.|++++|++...+
T Consensus 200 ~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 200 VFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp TTTTCTTCCEEECCSSCBCCCT
T ss_pred HHhCCcCCCEEEccCCCccccC
Confidence 5678888888888888887655
No 56
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=1.8e-22 Score=204.77 Aligned_cols=165 Identities=21% Similarity=0.196 Sum_probs=136.8
Q ss_pred HHHhcccccceecccCcCcCCCCC-chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCc--cCCCC
Q 014792 126 DKFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKE--VTGLP 202 (418)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~--~~~l~ 202 (418)
..+..+++|++|++++|.+...++ .+.. +++|++|+|++|.+.+. .+..++.+++|++|++++|+++.. ++.+.
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 120 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYS-LGSLEHLDLSDNHLSSL--SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTSCCCSC--CHHHHTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccc-cccCCEEECCCCccCcc--CHHHhccCCCCcEEECCCCcccccchhhhhh
Confidence 457899999999999999998876 4554 59999999999999974 367789999999999999999864 34688
Q ss_pred CCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCC
Q 014792 203 QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIR 282 (418)
Q Consensus 203 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~ 282 (418)
.+++|++|++++|.+.....+..+..+++|++|++++|.+++..+. .++.+++|+.|+++.|.+...+. ..+..++
T Consensus 121 ~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~ 196 (549)
T 2z81_A 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ---SLKSIRDIHHLTLHLSESAFLLE-IFADILS 196 (549)
T ss_dssp TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT---TTTTCSEEEEEEEECSBSTTHHH-HHHHSTT
T ss_pred ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh---hhhccccCceEecccCcccccch-hhHhhcc
Confidence 9999999999999833222234557899999999999999886554 57888999999999999887765 3445689
Q ss_pred CCCEEecCCCCCCcc
Q 014792 283 SLEQLYLNKNNLNRI 297 (418)
Q Consensus 283 ~L~~L~l~~n~l~~~ 297 (418)
+|+.|++++|.+++.
T Consensus 197 ~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 197 SVRYLELRDTNLARF 211 (549)
T ss_dssp TBSEEEEESCBCTTC
T ss_pred cccEEEccCCccccc
Confidence 999999999998875
No 57
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=2.7e-22 Score=188.82 Aligned_cols=210 Identities=18% Similarity=0.176 Sum_probs=163.6
Q ss_pred cccccceecccCcCcCCCCC-chh-hhcCCccEEEcCCCCCCChH-HHH-HHhhcCCCCCEEEcCCCCCCCccC-CCCCC
Q 014792 130 KFEELTSAALPYLGVSSPGA-NIG-TIVTNLKELDLTGNLLSDWK-DIG-AFGEQLPALAVLNLSNNLMSKEVT-GLPQL 204 (418)
Q Consensus 130 ~l~~L~~L~L~~~~i~~~~~-~~~-~~~~~L~~L~Ls~n~l~~~~-~l~-~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l 204 (418)
.+++|++|++++|.+.+..+ .+. ..+++|++|+|++|.+.... .++ ..+..+++|++|++++|++...++ .+..+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 45779999999999987776 431 33599999999999998621 111 344589999999999999988876 68899
Q ss_pred CCccEEEecCCCCCHHH-HH--HHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCC
Q 014792 205 KSIRILVLNCTGVNWMQ-VE--ILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQI 281 (418)
Q Consensus 205 ~~L~~L~L~~n~l~~~~-~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l 281 (418)
++|++|++++|.+.... ++ ..+..+++|++|++++|.++.++......++.+++|++|+|++|.+.+..+ ..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p-~~~~~~ 247 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN-PSAPRC 247 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-SCCSSC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch-hhHHhc
Confidence 99999999999977421 22 223578999999999999976543100114567999999999999998732 234444
Q ss_pred ---CCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCC
Q 014792 282 ---RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHAS 358 (418)
Q Consensus 282 ---~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~ 358 (418)
++|++|++++|+|+.+ |.. + +++|+.|+|+
T Consensus 248 ~~~~~L~~L~Ls~N~l~~l--p~~----------------~--~~~L~~L~Ls--------------------------- 280 (310)
T 4glp_A 248 MWSSALNSLNLSFAGLEQV--PKG----------------L--PAKLRVLDLS--------------------------- 280 (310)
T ss_dssp CCCTTCCCEECCSSCCCSC--CSC----------------C--CSCCSCEECC---------------------------
T ss_pred cCcCcCCEEECCCCCCCch--hhh----------------h--cCCCCEEECC---------------------------
Confidence 7999999999999976 443 2 2799999999
Q ss_pred CCCCcCCCcccccccCCCCCceEEcCCCCCCCC
Q 014792 359 GNNMIEDLASIDSLDSFPKLMDIRLSENPVSDP 391 (418)
Q Consensus 359 ~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~ 391 (418)
+|.+..+| .+..+++|++|++++|++++.
T Consensus 281 -~N~l~~~~---~~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 281 -SNRLNRAP---QPDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp -SCCCCSCC---CTTSCCCCSCEECSSTTTSCC
T ss_pred -CCcCCCCc---hhhhCCCccEEECcCCCCCCC
Confidence 99999886 367889999999999999853
No 58
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=2.6e-21 Score=201.36 Aligned_cols=272 Identities=18% Similarity=0.136 Sum_probs=166.4
Q ss_pred HHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHH-HHhhc--CCCCCEEEcCCCCCCCccC-CCC
Q 014792 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIG-AFGEQ--LPALAVLNLSNNLMSKEVT-GLP 202 (418)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~-~~~~~--l~~L~~L~Ls~n~l~~~~~-~l~ 202 (418)
.+..+++|++|++++|.+.+.++.....+++|++|++++|.+... .++ ..+.. .++|+.|++++|++++..+ .+.
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~-~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR-TLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC-EECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhh-hcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence 345666777777777777666553333346777777766653310 000 11111 2456666666676666554 466
Q ss_pred CCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhh-hhcCCC
Q 014792 203 QLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI-LKLCQI 281 (418)
Q Consensus 203 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l-~~l~~l 281 (418)
.+++|++|++++|.+.....+..+..+++|++|++++|.+..+.+. .+..+++|+.|++++|.+.....+ ..+..+
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN---SFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTT---TTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChh---hhhcCcccccchhccccccccccCCcccccC
Confidence 7777888888877765322223446677777777777777665543 355566666666666665432211 345566
Q ss_pred CCCCEEecCCCCCCcccCCCC--CchhhhhccccccCcc-------------ccCCCCCcEEEccCC--CCCCCCCccch
Q 014792 282 RSLEQLYLNKNNLNRIYYPNN--DTIHELVSAHESHEES-------------YLPFQNLCCLLLGNS--KKLPTSSHVSF 344 (418)
Q Consensus 282 ~~L~~L~l~~n~l~~~~~~~~--~~~~~~~~~~~~~~~~-------------~~~l~~L~~L~L~~n--~~i~~~~~~~~ 344 (418)
++|+.|++++|.++.+.+... ...++.++++.|.... +..+++|+.|+|++| ..+|... +
T Consensus 480 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~-~-- 556 (680)
T 1ziw_A 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV-F-- 556 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTT-T--
T ss_pred CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHH-c--
Confidence 677777777776666533221 2345555555554332 567889999999988 4555421 0
Q ss_pred hhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHH-hhCCceeecCcc
Q 014792 345 VVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIA-RLGKIKILNGSE 415 (418)
Q Consensus 345 l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~-~l~~L~~Ln~s~ 415 (418)
.-...|+.|+++ +|.++.++. ..+..+++|+.|+|++|.++... + ..++ .+++|+.|+++.
T Consensus 557 --~~l~~L~~L~Ls-~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~----~--~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 557 --KDLFELKIIDLG-LNNLNTLPA-SVFNNQVSLKSLNLQKNLITSVE----K--KVFGPAFRNLTELDMRF 618 (680)
T ss_dssp --TTCTTCCEEECC-SSCCCCCCT-TTTTTCTTCCEEECTTSCCCBCC----H--HHHHHHHTTCSEEECTT
T ss_pred --ccccCcceeECC-CCCCCcCCH-hHhCCCCCCCEEECCCCcCCccC----h--hHhcccccccCEEEccC
Confidence 111246677776 888888875 35788899999999999988533 1 2233 678899888764
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=3.7e-23 Score=194.92 Aligned_cols=244 Identities=18% Similarity=0.068 Sum_probs=145.9
Q ss_pred cccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhh-------cCCCCCEEEcCCCCCCCccC-CC
Q 014792 130 KFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGE-------QLPALAVLNLSNNLMSKEVT-GL 201 (418)
Q Consensus 130 ~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~-------~l~~L~~L~Ls~n~l~~~~~-~l 201 (418)
..++|+.+++++|.+ .++..+.. .|++|+|++|.+... .+|..+. .+++|++|++++|++++..+ .+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~---~L~~L~L~~n~l~~~-~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTD---IIKSLSLKRLTVRAA-RIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHH---HHHHCCCCEEEEEEE-ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc-ccHHHHHH---HHhhcccccccccCC-CcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 445667777777777 44333432 266667777666432 1233222 56777777777777765444 33
Q ss_pred --CCCCCccEEEecCCCCCHHHHHHHHhcC-----CcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhh
Q 014792 202 --PQLKSIRILVLNCTGVNWMQVEILKHSL-----PALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSE 274 (418)
Q Consensus 202 --~~l~~L~~L~L~~n~l~~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 274 (418)
..+++|++|++++|.++.. +..+..+ ++|++|++++|.+..+++. .++.+++|++|+|++|.+.+...
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE---QVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS--SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT---TCCCCSSCCEEECCSCTTCHHHH
T ss_pred HHhcCCCccEEEccCCCCcch--hHHHHHHHHhhcCCCcEEEeeCCCCccchHH---HhccCCCCCEEECCCCCcCcchH
Confidence 6677777777777776642 2333333 6777777777777666543 46667777777777777654321
Q ss_pred h-hhc--CCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCC--C-CCCCCccchhhhh
Q 014792 275 I-LKL--CQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSK--K-LPTSSHVSFVVYF 348 (418)
Q Consensus 275 l-~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~--~-i~~~~~~~~l~~~ 348 (418)
+ ..+ ..+++|++|++++|.|+.+. .... ..+..+++|+.|++++|. . +|... +..
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~---- 251 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPS--GVCS------------ALAAARVQLQGLDLSHNSLRDAAGAPS-CDW---- 251 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHH--HHHH------------HHHHTTCCCSEEECTTSCCCSSCCCSC-CCC----
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchH--HHHH------------HHHhcCCCCCEEECCCCcCCcccchhh-hhh----
Confidence 1 223 66777777777777776431 1000 002345666666666662 1 11111 100
Q ss_pred hhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 349 LIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 349 ~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
...|+.|+++ +|.++.+|. .+. ++|++|++++|.+.+.+ . ++.+++|+.|+++.
T Consensus 252 l~~L~~L~Ls-~N~l~~ip~--~~~--~~L~~L~Ls~N~l~~~p-----~---~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 252 PSQLNSLNLS-FTGLKQVPK--GLP--AKLSVLDLSYNRLDRNP-----S---PDELPQVGNLSLKG 305 (312)
T ss_dssp CTTCCEEECT-TSCCSSCCS--SCC--SEEEEEECCSSCCCSCC-----C---TTTSCEEEEEECTT
T ss_pred cCCCCEEECC-CCccChhhh--hcc--CCceEEECCCCCCCCCh-----h---HhhCCCCCEEeccC
Confidence 1234555555 899998874 444 89999999999998642 1 56789999998864
No 60
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Probab=99.86 E-value=1.1e-21 Score=146.00 Aligned_cols=73 Identities=37% Similarity=0.642 Sum_probs=66.9
Q ss_pred CCCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccCCC
Q 014792 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (418)
Q Consensus 6 ~~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~~ 81 (418)
+..+.||+||.+.+. +.|||||+|++++.++.|+|||||+|.|||||+++|++||+|. +++|.|++++++...
T Consensus 16 ~~~~~vG~rV~V~g~--~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~G~Fvr~~kv~~~ 88 (95)
T 2cp2_A 16 LGDFVVGERVWVNGV--KPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECP-ALQGIFTRPSKLTRQ 88 (95)
T ss_dssp CCSCCTTCEEEGGGS--CEEEEEEEEECSSSCSEEEEEEESSSCSSBBSEETTEECCCCC-TTTEEEECGGGCCSS
T ss_pred hhcCcCCCEEEECCc--eEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEecccC-CCeEEEEcHHHCccC
Confidence 457999999999864 5699999999999999999999999999999999999999998 699999999988654
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=1.8e-21 Score=186.56 Aligned_cols=255 Identities=14% Similarity=0.127 Sum_probs=178.5
Q ss_pred HhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCCC
Q 014792 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKS 206 (418)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~ 206 (418)
...++.....+++++.++.++..+. ++|++|++++|.+..+. +..+..+++|++|++++|++++..+ .+..+++
T Consensus 27 ~~~C~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYIS--NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101 (353)
T ss_dssp CCEECTTSEEECCSTTCSSCCTTCC---TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCCCeEeeCCCCCccccccccc---ccCcEEECCCCcCcccC--HHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence 3455666667888888888876543 68999999999988632 3467889999999999999987766 5888899
Q ss_pred ccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCC-CCCCccCCCCCccEEeCCCC-CCCChhhhhhcCCCCCC
Q 014792 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITP-VSSPIVQGFDNLQLLNLEDN-CIAEWSEILKLCQIRSL 284 (418)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~~l~~l~~l~~L 284 (418)
|++|++++|.++. ..+..+..+++|++|++++|.++.++. . .+..+++|++|++++| .+...++ ..+..+++|
T Consensus 102 L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~---~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L 176 (353)
T 2z80_A 102 LEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPYKTLGETS---LFSHLTKLQILRVGNMDTFTKIQR-KDFAGLTFL 176 (353)
T ss_dssp CCEEECCSSCCSS-CCHHHHTTCTTCSEEECTTCCCSSSCSSC---SCTTCTTCCEEEEEESSSCCEECT-TTTTTCCEE
T ss_pred CCEEECCCCcCCc-CCHhHhCCCccCCEEECCCCCCcccCchh---hhccCCCCcEEECCCCccccccCH-HHccCCCCC
Confidence 9999999998874 233446788999999999999887765 2 4778899999999998 4666543 567888999
Q ss_pred CEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcC
Q 014792 285 EQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIE 364 (418)
Q Consensus 285 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~ 364 (418)
++|++++|.++++.+.. +..+++|++|++++|.. .... .........|+.|+++ +|.+.
T Consensus 177 ~~L~l~~n~l~~~~~~~-----------------l~~l~~L~~L~l~~n~l-~~~~--~~~~~~~~~L~~L~L~-~n~l~ 235 (353)
T 2z80_A 177 EELEIDASDLQSYEPKS-----------------LKSIQNVSHLILHMKQH-ILLL--EIFVDVTSSVECLELR-DTDLD 235 (353)
T ss_dssp EEEEEEETTCCEECTTT-----------------TTTCSEEEEEEEECSCS-TTHH--HHHHHHTTTEEEEEEE-SCBCT
T ss_pred CEEECCCCCcCccCHHH-----------------HhccccCCeecCCCCcc-ccch--hhhhhhcccccEEECC-CCccc
Confidence 99999999988874333 56778888888886631 0000 0111112345666666 67776
Q ss_pred CCccc--ccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 365 DLASI--DSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 365 ~~~~~--~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
.++.. ......+.++.++++++.+.+.. .......++.+++|+.||++.
T Consensus 236 ~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~--l~~l~~~l~~l~~L~~L~Ls~ 286 (353)
T 2z80_A 236 TFHFSELSTGETNSLIKKFTFRNVKITDES--LFQVMKLLNQISGLLELEFSR 286 (353)
T ss_dssp TCCCC------CCCCCCEEEEESCBCCHHH--HHHHHHHHHTCTTCCEEECCS
T ss_pred cccccccccccccchhhccccccccccCcc--hhhhHHHHhcccCCCEEECCC
Confidence 65421 12234667788888888776321 011223477889999999874
No 62
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.85 E-value=2e-21 Score=141.49 Aligned_cols=70 Identities=40% Similarity=0.738 Sum_probs=64.8
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccC
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLS 79 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~ 79 (418)
..++||+||.+.+. +.|||||+|++++.++.|+|||||+|.|||||+++|++||+|. ++.|.|++++++.
T Consensus 6 ~~~~vG~rv~v~g~--~~GtVryvG~~~~~~G~wvGVelDep~GkndGsv~G~rYF~c~-~~~G~Fv~~~kv~ 75 (84)
T 2cp3_A 6 SGLRLGDRVLVGGT--KTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCP-PKFGLFAPIHKVI 75 (84)
T ss_dssp CSCCTTCEEEETTT--EEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESSCCC-TTTEEEEEGGGEE
T ss_pred cccccCCEEEECCC--CeEEEEEeccCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecC-CCeEEEEcHHHeE
Confidence 56999999999774 5799999999999999999999999999999999999999997 6999999998764
No 63
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.85 E-value=1.7e-21 Score=146.54 Aligned_cols=76 Identities=33% Similarity=0.601 Sum_probs=68.2
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccCCCCcch
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPGISLP 85 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~~~s~~ 85 (418)
..+.||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. ++.|.|++++++....+|+
T Consensus 24 ~~~~VG~RV~V~g~--~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~GiFvr~~~v~~~~d~p 99 (102)
T 1whh_A 24 AKAEVGDQVLVAGQ--KQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCA-PRHGVFAPASRIQRIGSGP 99 (102)
T ss_dssp CSSCTTSEEEETTT--EEEEEEEEEECSSSSSEEEEEECSSSCCSSSSEETTEECSCCC-TTTEEEECGGGEEECCSCT
T ss_pred ccCcCCCEEEECCC--cEEEEEEeeecCCCCCeEEEEEeCCCCCcCCCEECCEEeeecC-CCcEEEecHHHeEECCCCC
Confidence 56999999999774 5799999999999999999999999999999999999999997 6999999999886544443
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=1.4e-20 Score=192.46 Aligned_cols=225 Identities=19% Similarity=0.230 Sum_probs=132.6
Q ss_pred hhhHHHHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCC
Q 014792 121 KDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG 200 (418)
Q Consensus 121 ~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~ 200 (418)
+..+|..+. ++|+.|+|++|.|+.++. .+++|++|+|++|.++.++ . .+++|++|++++|+++..+.
T Consensus 52 L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp---~---~l~~L~~L~Ls~N~l~~l~~- 118 (622)
T 3g06_A 52 LTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLP---V---LPPGLLELSIFSNPLTHLPA- 118 (622)
T ss_dssp CSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCC---C---CCTTCCEEEECSCCCCCCCC-
T ss_pred cCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCC---C---CCCCCCEEECcCCcCCCCCC-
Confidence 345554443 688888888888887664 3488889999988888643 2 67888999999888887654
Q ss_pred CCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCC
Q 014792 201 LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ 280 (418)
Q Consensus 201 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~ 280 (418)
.+++|+.|++++|.++. ++. .+++|++|++++|.++.++.. +.+|+.|++++|.++.++ ..
T Consensus 119 --~l~~L~~L~L~~N~l~~--lp~---~l~~L~~L~Ls~N~l~~l~~~-------~~~L~~L~L~~N~l~~l~-----~~ 179 (622)
T 3g06_A 119 --LPSGLCKLWIFGNQLTS--LPV---LPPGLQELSVSDNQLASLPAL-------PSELCKLWAYNNQLTSLP-----ML 179 (622)
T ss_dssp --CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSCCCCC-------CTTCCEEECCSSCCSCCC-----CC
T ss_pred --CCCCcCEEECCCCCCCc--CCC---CCCCCCEEECcCCcCCCcCCc-------cCCCCEEECCCCCCCCCc-----cc
Confidence 56788888888888773 332 357888888888888876532 234444455544444432 22
Q ss_pred CCCCCEEecCCCCCCcccC------------------CCCCchhhhhccccccCccc-cCCCCCcEEEccCC--CCCCCC
Q 014792 281 IRSLEQLYLNKNNLNRIYY------------------PNNDTIHELVSAHESHEESY-LPFQNLCCLLLGNS--KKLPTS 339 (418)
Q Consensus 281 l~~L~~L~l~~n~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~L~~n--~~i~~~ 339 (418)
+++|+.|++++|.|+.+.. +.....++.++++.|.+..+ ..+++|+.|+|++| ..+|.
T Consensus 180 ~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~lp~- 258 (622)
T 3g06_A 180 PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM- 258 (622)
T ss_dssp CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-
T ss_pred CCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCcCCc-
Confidence 3445555555555544310 22223344444444433332 22344555555544 22332
Q ss_pred CccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCC
Q 014792 340 SHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVS 389 (418)
Q Consensus 340 ~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~ 389 (418)
...+|+.|+++ +|.+..+| ..+..+++|+.|+|++|++.
T Consensus 259 --------~~~~L~~L~Ls-~N~L~~lp--~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 259 --------LPSGLLSLSVY-RNQLTRLP--ESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp --------CCTTCCEEECC-SSCCCSCC--GGGGGSCTTCEEECCSCCCC
T ss_pred --------ccccCcEEeCC-CCCCCcCC--HHHhhccccCEEEecCCCCC
Confidence 11234455555 55555555 34556666666666666665
No 65
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=3.6e-22 Score=205.11 Aligned_cols=208 Identities=22% Similarity=0.135 Sum_probs=146.3
Q ss_pred cCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccE
Q 014792 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEE 234 (418)
Q Consensus 155 ~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 234 (418)
+++|++|++++|.+.....++..+..+++|++|++++|.+...+..+..+++|++|++++|.+........+..+++|++
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 36777777777777654323566777888888888888877666667778888888888887664322234567788888
Q ss_pred EEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCCh-hhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhcccc
Q 014792 235 LHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEW-SEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHE 313 (418)
Q Consensus 235 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 313 (418)
|++++|.+....+. .+..+++|++|++++|.+.+. .+ ..+..+++|+.|++++|.++++.+..
T Consensus 429 L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~------------ 492 (606)
T 3vq2_A 429 LDISYTNTKIDFDG---IFLGLTSLNTLKMAGNSFKDNTLS-NVFANTTNLTFLDLSKCQLEQISWGV------------ 492 (606)
T ss_dssp EECTTSCCEECCTT---TTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTT------------
T ss_pred EECcCCCCCccchh---hhcCCCCCCEEECCCCcCCCcchH-HhhccCCCCCEEECCCCcCCccChhh------------
Confidence 88888887775544 467778888888888877752 22 45677788888888888887764322
Q ss_pred ccCccccCCCCCcEEEccCCC--CC-CCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCC-CCceEEcCCCCCC
Q 014792 314 SHEESYLPFQNLCCLLLGNSK--KL-PTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFP-KLMDIRLSENPVS 389 (418)
Q Consensus 314 ~~~~~~~~l~~L~~L~L~~n~--~i-~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~-~L~~L~l~~N~l~ 389 (418)
+..+++|+.|++++|. .+ |... .-...|+.|+++ +|.+..+|. .+..++ +|+.|++++||+.
T Consensus 493 -----~~~l~~L~~L~Ls~N~l~~~~~~~~------~~l~~L~~L~l~-~N~l~~~p~--~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 493 -----FDTLHRLQLLNMSHNNLLFLDSSHY------NQLYSLSTLDCS-FNRIETSKG--ILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp -----TTTCTTCCEEECCSSCCSCEEGGGT------TTCTTCCEEECT-TSCCCCEES--CGGGSCTTCCEEECCSCCCC
T ss_pred -----hcccccCCEEECCCCcCCCcCHHHc------cCCCcCCEEECC-CCcCcccCH--hHhhhcccCcEEEccCCCcc
Confidence 5677888888888772 11 2111 111346677777 888988884 588887 5999999999999
Q ss_pred CCC
Q 014792 390 DPG 392 (418)
Q Consensus 390 ~~~ 392 (418)
+++
T Consensus 559 c~c 561 (606)
T 3vq2_A 559 CIC 561 (606)
T ss_dssp CSS
T ss_pred cCC
Confidence 766
No 66
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.85 E-value=1.6e-21 Score=145.04 Aligned_cols=71 Identities=39% Similarity=0.728 Sum_probs=65.2
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccCC
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSP 80 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~ 80 (418)
..++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. ++.|.|++++++..
T Consensus 15 ~~~~vG~RV~V~g~--~~GtVryvG~v~~~~G~wvGVelDep~GKnDGsv~G~rYF~C~-~~~G~Fv~~~kv~~ 85 (95)
T 2cp0_A 15 LGLRLGDRVLLDGQ--KTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICP-PKQGLFASVSKISK 85 (95)
T ss_dssp HTCCTTCEEEETTT--EEEEEEEEECCSSSCSCEEEEEESSSCCSBCSEETTEECCCCS-SSCEEEECGGGEEE
T ss_pred cCCCCCCEEEECCC--CeEEEEEecccCCCCCcEEEEEecCCCCcCCCEECCEEeeecC-CCcEEEEcHHHeec
Confidence 35999999999764 5799999999999999999999999999999999999999998 69999999988753
No 67
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=3.6e-22 Score=193.75 Aligned_cols=254 Identities=17% Similarity=0.147 Sum_probs=140.5
Q ss_pred chhhHHHHHhcccccceecccCcCcCCCCC-c----hhhhcCCccEEEcCCCCCCC--------hHHHHHHhhcCCCCCE
Q 014792 120 GKDKIQDKFSKFEELTSAALPYLGVSSPGA-N----IGTIVTNLKELDLTGNLLSD--------WKDIGAFGEQLPALAV 186 (418)
Q Consensus 120 g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~-~----~~~~~~~L~~L~Ls~n~l~~--------~~~l~~~~~~l~~L~~ 186 (418)
++..++..+..+++|+.|+|++|.++...+ . +.. +++|++|+|++|.+.. +..++..+..+++|++
T Consensus 20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~-~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIAS-KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTT-CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHh-CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 344556667777777777777777765433 1 222 4777777777765542 2233444467777777
Q ss_pred EEcCCCCCCCc-----cCCCCCCCCccEEEecCCCCCHHHH---HHHHhcC---------CcccEEEccCCCCCccC-CC
Q 014792 187 LNLSNNLMSKE-----VTGLPQLKSIRILVLNCTGVNWMQV---EILKHSL---------PALEELHLMGNSISEIT-PV 248 (418)
Q Consensus 187 L~Ls~n~l~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~l---------~~L~~L~L~~n~l~~~~-~~ 248 (418)
|+|++|.+... +..+..+++|++|++++|.++.... +..+..+ ++|++|++++|.+.... +.
T Consensus 99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH
T ss_pred EECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH
Confidence 77777777652 2245566777777777777753322 2222333 67777777777775221 11
Q ss_pred CCCccCCCCCccEEeCCCCCCCChh--hh-h-hcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCC
Q 014792 249 SSPIVQGFDNLQLLNLEDNCIAEWS--EI-L-KLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQN 324 (418)
Q Consensus 249 ~~~~~~~l~~L~~L~L~~n~l~~~~--~l-~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 324 (418)
+...+..+++|++|+|++|.+.... .+ . .+..+++|+.|++++|.+++...... +..+..+++
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l-------------~~~l~~~~~ 245 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL-------------AIALKSWPN 245 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH-------------HHHGGGCTT
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH-------------HHHHccCCC
Confidence 0112445667777777777776321 11 2 56667777777777777742110000 011455666
Q ss_pred CcEEEccCCCCCCCCCc--cchhhhh--hhhhhhccCCCCCCcCC-----Ccccccc-cCCCCCceEEcCCCCCCCC
Q 014792 325 LCCLLLGNSKKLPTSSH--VSFVVYF--LIFAFSLHASGNNMIED-----LASIDSL-DSFPKLMDIRLSENPVSDP 391 (418)
Q Consensus 325 L~~L~L~~n~~i~~~~~--~~~l~~~--~~~l~~l~~~~~n~i~~-----~~~~~~l-~~~~~L~~L~l~~N~l~~~ 391 (418)
|+.|+|++|. +..... ++..... ...|+.|+++ +|.+.. ++ ..+ ..+++|+.|++++|++...
T Consensus 246 L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~-~n~i~~~g~~~l~--~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 246 LRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQ-YNEIELDAVRTLK--TVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp CCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECC-SSCCBHHHHHHHH--HHHHHHCTTCCEEECTTSBSCTT
T ss_pred cCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECc-CCcCCHHHHHHHH--HHHHhcCCCceEEEccCCcCCcc
Confidence 7777777442 100000 0000000 2234445554 677765 44 234 4578888888888888743
No 68
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=99.85 E-value=2.3e-21 Score=142.93 Aligned_cols=71 Identities=38% Similarity=0.709 Sum_probs=65.2
Q ss_pred CCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccCCC
Q 014792 8 SYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (418)
Q Consensus 8 ~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~~ 81 (418)
.++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|++++++..+
T Consensus 1 ~l~vG~rV~V~g~--~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~-p~~G~Fv~~~kv~~~ 71 (90)
T 2e3h_A 1 ELKIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQ-PKYGLFAPVHKVTKI 71 (90)
T ss_dssp CCCTTCEEEETTT--EEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESCCCC-TTCEEEEEGGGEEET
T ss_pred CCcCCCEEEECCC--CEEEEEEeccCCCCCCeEEEEEECCCCCCCCCEECCEEeeecC-CCcEEEEcHHHeEEC
Confidence 3789999999774 5799999999999999999999999999999999999999997 699999999988654
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=1e-20 Score=193.43 Aligned_cols=232 Identities=17% Similarity=0.166 Sum_probs=180.7
Q ss_pred ccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEE
Q 014792 131 FEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRIL 210 (418)
Q Consensus 131 l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L 210 (418)
..+++.|+++++.++.++..+. ++|++|+|++|.++.++ . .+++|++|+|++|+++..+. .+++|++|
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp---~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L 106 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLP---A---LPPELRTLEVSGNQLTSLPV---LPPGLLEL 106 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCC---C---CCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred CCCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCC---C---cCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence 3468999999999998876554 79999999999999654 3 58899999999999987654 67899999
Q ss_pred EecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecC
Q 014792 211 VLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLN 290 (418)
Q Consensus 211 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~ 290 (418)
++++|.++. ++. .+++|+.|++++|.++.++.. +++|++|+|++|.+++++. .+++|+.|+++
T Consensus 107 ~Ls~N~l~~--l~~---~l~~L~~L~L~~N~l~~lp~~-------l~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~ 169 (622)
T 3g06_A 107 SIFSNPLTH--LPA---LPSGLCKLWIFGNQLTSLPVL-------PPGLQELSVSDNQLASLPA-----LPSELCKLWAY 169 (622)
T ss_dssp EECSCCCCC--CCC---CCTTCCEEECCSSCCSCCCCC-------CTTCCEEECCSSCCSCCCC-----CCTTCCEEECC
T ss_pred ECcCCcCCC--CCC---CCCCcCEEECCCCCCCcCCCC-------CCCCCEEECcCCcCCCcCC-----ccCCCCEEECC
Confidence 999999874 333 578999999999999987643 3899999999999988653 35789999999
Q ss_pred CCCCCcccCCCCCchhhhhccccccCccc-cCC--------------------CCCcEEEccCC--CCCCCCCccchhhh
Q 014792 291 KNNLNRIYYPNNDTIHELVSAHESHEESY-LPF--------------------QNLCCLLLGNS--KKLPTSSHVSFVVY 347 (418)
Q Consensus 291 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l--------------------~~L~~L~L~~n--~~i~~~~~~~~l~~ 347 (418)
+|.|+.+ +.....++.++++.|.+..+ ..+ ++|+.|++++| ..+| .
T Consensus 170 ~N~l~~l--~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp---------~ 238 (622)
T 3g06_A 170 NNQLTSL--PMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP---------V 238 (622)
T ss_dssp SSCCSCC--CCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC---------C
T ss_pred CCCCCCC--cccCCCCcEEECCCCCCCCCCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC---------C
Confidence 9999999 46667788888887765442 223 45555555555 2333 1
Q ss_pred hhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 348 FLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 348 ~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
...+|+.|+++ +|.+..+|. .+++|+.|+|++|.+...+ . .+..+++|+.|+++.
T Consensus 239 ~l~~L~~L~Ls-~N~L~~lp~-----~~~~L~~L~Ls~N~L~~lp-----~--~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 239 LPSELKELMVS-GNRLTSLPM-----LPSGLLSLSVYRNQLTRLP-----E--SLIHLSSETTVNLEG 293 (622)
T ss_dssp CCTTCCEEECC-SSCCSCCCC-----CCTTCCEEECCSSCCCSCC-----G--GGGGSCTTCEEECCS
T ss_pred CCCcCcEEECC-CCCCCcCCc-----ccccCcEEeCCCCCCCcCC-----H--HHhhccccCEEEecC
Confidence 12457788888 788888873 6789999999999998432 1 267899999999874
No 70
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=5.8e-21 Score=181.49 Aligned_cols=235 Identities=18% Similarity=0.186 Sum_probs=177.1
Q ss_pred HHHHhcc--cccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CC
Q 014792 125 QDKFSKF--EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GL 201 (418)
Q Consensus 125 ~~~~~~l--~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l 201 (418)
+..+..+ +.++.++++++.+.+..+.+..+ ++|++|+|++|.+.. ..++..+..+++|++|++++|.++...+ .+
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~~~l~~-~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l 138 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSP-FRVQHMDLSNSVIEV-STLHGILSQCSKLQNLSLEGLRLSDPIVNTL 138 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCCSCCCC-BCCCEEECTTCEECH-HHHHHHHTTBCCCSEEECTTCBCCHHHHHHH
T ss_pred HHHHHhhhhccceEEEcCCccccccchhhccC-CCCCEEEccCCCcCH-HHHHHHHhhCCCCCEEeCcCcccCHHHHHHH
Confidence 4556666 89999999999999888776664 999999999999875 1378899999999999999999886544 57
Q ss_pred CCCCCccEEEecCC-CCCHHHHHHHHhcCCcccEEEccCC-CCCccCCCCCCccCCCC-CccEEeCCCC--CCCChhhhh
Q 014792 202 PQLKSIRILVLNCT-GVNWMQVEILKHSLPALEELHLMGN-SISEITPVSSPIVQGFD-NLQLLNLEDN--CIAEWSEIL 276 (418)
Q Consensus 202 ~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~-~L~~L~L~~n--~l~~~~~l~ 276 (418)
..+++|++|++++| .++...++..+..+++|++|++++| .+++... ...+..++ +|++|++++| .+++..-..
T Consensus 139 ~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~ 216 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV--QVAVAHVSETITQLNLSGYRKNLQKSDLST 216 (336)
T ss_dssp TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHH--HHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHH--HHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence 78999999999999 7887678888899999999999999 8875310 11366788 9999999999 454322113
Q ss_pred hcCCCCCCCEEecCCCC-CCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhc
Q 014792 277 KLCQIRSLEQLYLNKNN-LNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSL 355 (418)
Q Consensus 277 ~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l 355 (418)
.+..+++|++|++++|. +++..++. +..+++|+.|+++
T Consensus 217 ~~~~~~~L~~L~l~~~~~l~~~~~~~-----------------l~~l~~L~~L~l~------------------------ 255 (336)
T 2ast_B 217 LVRRCPNLVHLDLSDSVMLKNDCFQE-----------------FFQLNYLQHLSLS------------------------ 255 (336)
T ss_dssp HHHHCTTCSEEECTTCTTCCGGGGGG-----------------GGGCTTCCEEECT------------------------
T ss_pred HHhhCCCCCEEeCCCCCcCCHHHHHH-----------------HhCCCCCCEeeCC------------------------
Confidence 56779999999999998 66553332 5778999999999
Q ss_pred cCCCCCC-cCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCccc
Q 014792 356 HASGNNM-IEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSEV 416 (418)
Q Consensus 356 ~~~~~n~-i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~i 416 (418)
+|. +.+. .+..+..+++|++|++++| +.+.. . ......++.|+ ++...+
T Consensus 256 ----~~~~~~~~-~~~~l~~~~~L~~L~l~~~-i~~~~---~--~~l~~~l~~L~-l~~n~l 305 (336)
T 2ast_B 256 ----RCYDIIPE-TLLELGEIPTLKTLQVFGI-VPDGT---L--QLLKEALPHLQ-INCSHF 305 (336)
T ss_dssp ----TCTTCCGG-GGGGGGGCTTCCEEECTTS-SCTTC---H--HHHHHHSTTSE-ESCCCS
T ss_pred ----CCCCCCHH-HHHHHhcCCCCCEEeccCc-cCHHH---H--HHHHhhCcceE-EecccC
Confidence 553 2211 1235677888888888888 44321 1 12224577776 454444
No 71
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.84 E-value=3.1e-21 Score=146.05 Aligned_cols=77 Identities=22% Similarity=0.491 Sum_probs=67.7
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEE-eCCCCCCCCEECCEEeeecCCCCccccccccccCCCCcc
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDW-DYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPGISL 84 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~-d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~~~s~ 84 (418)
..+.||+||.+.++..+.|||||+|++++.++.|+|||| |++.|||||+++|++||+|. +++|.|+++.++.....|
T Consensus 16 ~~l~VG~RV~V~~~~~~~GtVryvG~v~~~~G~wvGVEldDep~GKnDGsv~G~rYF~C~-p~~G~FVr~~~v~~~~rf 93 (104)
T 1ixd_A 16 HGLEVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCA-LKKALFVKLKSCRPDSRF 93 (104)
T ss_dssp SCCCTTSEEEECSSSCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECSCCC-TTCBEEEEGGGEEECCTT
T ss_pred cccccCCEEEECcCCCcEEEEEEecccCCCCceEEEEEecCCCCCCCCCEECCEEeeecC-CCcEEEEcHHHceecccc
Confidence 469999999997643467999999999999999999999 56669999999999999998 699999999988766555
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=7.1e-21 Score=198.10 Aligned_cols=159 Identities=23% Similarity=0.200 Sum_probs=104.4
Q ss_pred cccceecccCcCcCCCCCc-hhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCCCccE
Q 014792 132 EELTSAALPYLGVSSPGAN-IGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRI 209 (418)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~ 209 (418)
++++.|+|++|.++.+++. +.. +++|++|+|++|.+.+. .|..++.+++|++|++++|+++..++ .+..+++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTR-YSQLTSLDVGFNTISKL--EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGG-GTTCSEEECCSSCCCCC--CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEECCCCCCCCcCHHHHhC-CCcCcEEECCCCccCcc--CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 5677777777777776663 333 47777777777777763 25666777777777777777776655 3677777777
Q ss_pred EEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhc--CCCCCCCEE
Q 014792 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKL--CQIRSLEQL 287 (418)
Q Consensus 210 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l--~~l~~L~~L 287 (418)
|++++|.+... .+..++.+++|++|++++|.+++.++. .+..+++|++|++++|.+++.++ ..+ ..+++|+.|
T Consensus 102 L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 102 LHLMSNSIQKI-KNNPFVKQKNLITLDLSHNGLSSTKLG---TQVQLENLQELLLSNNKIQALKS-EELDIFANSSLKKL 176 (680)
T ss_dssp EECCSSCCCCC-CSCTTTTCTTCCEEECCSSCCSCCCCC---SSSCCTTCCEEECCSSCCCCBCH-HHHGGGTTCEESEE
T ss_pred EECCCCccCcc-ChhHccccCCCCEEECCCCcccccCch---hhcccccCCEEEccCCcccccCH-HHhhccccccccEE
Confidence 77777766531 223346677777777777777665543 45667777777777777766543 222 245677777
Q ss_pred ecCCCCCCccc
Q 014792 288 YLNKNNLNRIY 298 (418)
Q Consensus 288 ~l~~n~l~~~~ 298 (418)
++++|.++++.
T Consensus 177 ~L~~n~l~~~~ 187 (680)
T 1ziw_A 177 ELSSNQIKEFS 187 (680)
T ss_dssp ECTTCCCCCBC
T ss_pred ECCCCcccccC
Confidence 77777776653
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=6.6e-21 Score=175.89 Aligned_cols=178 Identities=21% Similarity=0.239 Sum_probs=151.6
Q ss_pred HhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCC-CCCCCC
Q 014792 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG-LPQLKS 206 (418)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~ 206 (418)
+..+++|+.|+++++.+.... .+.. +++|++|+|++|.+.+++ .+..+++|++|++++|.+++.++. +..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~-l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQY-LPNVRYLALGGNKLHDIS----ALKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGG-CTTCCEEECTTSCCCCCG----GGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred cccccceeeeeeCCCCccccc-cccc-CCCCcEEECCCCCCCCch----hhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 356889999999999998765 4555 499999999999999743 578999999999999999988774 789999
Q ss_pred ccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCE
Q 014792 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (418)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~ 286 (418)
|++|++++|.++. ..+..+..+++|++|++++|.++.+++. .+..+++|+.|++++|.+++.++ ..+..+++|++
T Consensus 111 L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 185 (272)
T 3rfs_A 111 LKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKG---VFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKD 185 (272)
T ss_dssp CCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCE
T ss_pred CCEEECCCCcCCc-cCHHHhccCCCCCEEECCCCccCccCHH---HhccCccCCEEECCCCCcCccCH-HHhcCCccCCE
Confidence 9999999999884 2344457899999999999999988765 46889999999999999998765 56788999999
Q ss_pred EecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCC
Q 014792 287 LYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNS 333 (418)
Q Consensus 287 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 333 (418)
|++++|.++++.+. . +..+++|+.|++++|
T Consensus 186 L~L~~N~l~~~~~~-~----------------~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 186 LRLYQNQLKSVPDG-V----------------FDRLTSLQYIWLHDN 215 (272)
T ss_dssp EECCSSCCSCCCTT-T----------------TTTCTTCCEEECCSS
T ss_pred EECCCCcCCccCHH-H----------------HhCCcCCCEEEccCC
Confidence 99999999987432 2 578899999999955
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=3.4e-21 Score=178.15 Aligned_cols=218 Identities=19% Similarity=0.190 Sum_probs=172.2
Q ss_pred eecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCCCccEEEecC
Q 014792 136 SAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNC 214 (418)
Q Consensus 136 ~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~ 214 (418)
.++..+..+..++..+. ++|++|+|++|.+..+. +..+..+++|++|++++|++....+ .+..+++|++|++++
T Consensus 11 ~~~c~~~~l~~ip~~l~---~~l~~L~ls~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP---FSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EEECTTSCCSSCCSSSC---TTCCEEECTTCCCCEEC--TTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCccccCCCCC---CCccEEECCCCcccccC--HhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC
Confidence 45666667777765443 68999999999999743 3477899999999999999998776 588999999999999
Q ss_pred CCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCC
Q 014792 215 TGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNL 294 (418)
Q Consensus 215 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l 294 (418)
|.+... .+..+..+++|++|++++|.+..+++. .+..+++|++|++++|.+.+..-...+..+++|++|++++|++
T Consensus 86 n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 86 NPIQSL-ALGAFSGLSSLQKLVAVETNLASLENF---PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp CCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTC---CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CccCcc-ChhhhcCCccccEEECCCCCccccCch---hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence 998853 334557899999999999999988764 4788999999999999998743115688899999999999999
Q ss_pred CcccCCCCCchhhhhccccccCccccCCCCCc----EEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccc
Q 014792 295 NRIYYPNNDTIHELVSAHESHEESYLPFQNLC----CLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASID 370 (418)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~----~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~ 370 (418)
+++.+.. +..+++|+ .|+++ +|.+..++.
T Consensus 162 ~~~~~~~-----------------~~~l~~L~~l~l~L~ls----------------------------~n~l~~~~~-- 194 (276)
T 2z62_A 162 QSIYCTD-----------------LRVLHQMPLLNLSLDLS----------------------------LNPMNFIQP-- 194 (276)
T ss_dssp CEECGGG-----------------GHHHHTCTTCCEEEECC----------------------------SSCCCEECT--
T ss_pred CcCCHHH-----------------hhhhhhccccceeeecC----------------------------CCcccccCc--
Confidence 9874322 34444555 88999 999988763
Q ss_pred cccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 371 SLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 371 ~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
......+|++|++++|.+..... ..++.+++|+.|+++.
T Consensus 195 ~~~~~~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 195 GAFKEIRLKELALDTNQLKSVPD------GIFDRLTSLQKIWLHT 233 (276)
T ss_dssp TSSCSCCEEEEECCSSCCSCCCT------TTTTTCCSCCEEECCS
T ss_pred cccCCCcccEEECCCCceeecCH------hHhcccccccEEEccC
Confidence 34445689999999999985431 2246789999999873
No 75
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.84 E-value=3.4e-21 Score=144.34 Aligned_cols=72 Identities=36% Similarity=0.645 Sum_probs=65.7
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccCCC
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~~ 81 (418)
..++||+||.+.+. +.|||||+|+++..++.|+|||||+|.|||||+++|++||+|. +++|.|+++.++...
T Consensus 22 ~~l~vG~rV~V~g~--~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~GiFvr~~~v~~~ 93 (100)
T 2cow_A 22 EWLREGEFVTVGAH--KTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCN-PGYGLLVRPSRVRRA 93 (100)
T ss_dssp SSCCTTCEEECSSS--CEEEEEEEECCSSSSSCEEEEECSSSCCSCSSEETTEECCCSC-TTCCEEECGGGCEEC
T ss_pred ccccCCCEEEECCC--cEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecC-CCeEEEecHHHeeEC
Confidence 46899999999764 5699999999999999999999999999999999999999996 699999999987543
No 76
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.84 E-value=4.2e-21 Score=144.35 Aligned_cols=72 Identities=35% Similarity=0.652 Sum_probs=65.6
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccCCC
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~~ 81 (418)
..++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. ++.|.|++++++...
T Consensus 23 ~~~~vG~RV~V~g~--~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~G~Fv~~~kv~~~ 94 (102)
T 1whj_A 23 LGLKLGDRVVIAGQ--KVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCA-PKYGIFAPLSKISKL 94 (102)
T ss_dssp HTCCTTCEEEETTT--EEEEEEEEEECSSSCSEEEEEEESSSCCSBSSEETTEECCCCC-TTTEEEEEGGGEEES
T ss_pred hcCcCCCEEEECCC--CEEEEEEeeecCCCCCeEEEEEeCCCCCccCCEECCEEecccC-CCeEEEEeHHHcccc
Confidence 35999999999774 5799999999999999999999999999999999999999997 699999999987543
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.1e-20 Score=177.73 Aligned_cols=204 Identities=23% Similarity=0.308 Sum_probs=170.5
Q ss_pred eecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEEecCC
Q 014792 136 SAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCT 215 (418)
Q Consensus 136 ~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n 215 (418)
.+.+..+.+.+.. ....+ ++|++|++++|.+..++ .+..+++|++|++++|.+...++ +..+++|++|++++|
T Consensus 23 ~~~l~~~~~~~~~-~~~~l-~~L~~L~l~~~~i~~l~----~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 23 KIAAGKSNVTDTV-TQADL-DGITTLSAFGTGVTTIE----GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN 95 (308)
T ss_dssp HHHTTCSSTTSEE-CHHHH-HTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC
T ss_pred HHHhCCCCcCcee-cHHHc-CCcCEEEeeCCCccCch----hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC
Confidence 3455555555533 34444 99999999999999743 46889999999999999998776 889999999999999
Q ss_pred CCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCC
Q 014792 216 GVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLN 295 (418)
Q Consensus 216 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~ 295 (418)
.+.. ++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.+.+.+. +..+++|+.|++++|.++
T Consensus 96 ~l~~--~~-~~~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 96 PLKN--VS-AIAGLQSIKTLDLTSTQITDVT-----PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp CCSC--CG-GGTTCTTCCEEECTTSCCCCCG-----GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCC
T ss_pred cCCC--ch-hhcCCCCCCEEECCCCCCCCch-----hhcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCC
Confidence 9885 33 3578999999999999998865 27889999999999999998764 788999999999999998
Q ss_pred cccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCC
Q 014792 296 RIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSF 375 (418)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~ 375 (418)
++.+ +..+++|+.|+++ +|.+.+++ .+..+
T Consensus 165 ~~~~-------------------l~~l~~L~~L~l~----------------------------~n~l~~~~---~l~~l 194 (308)
T 1h6u_A 165 DLTP-------------------LANLSKLTTLKAD----------------------------DNKISDIS---PLASL 194 (308)
T ss_dssp CCGG-------------------GTTCTTCCEEECC----------------------------SSCCCCCG---GGGGC
T ss_pred CChh-------------------hcCCCCCCEEECC----------------------------CCccCcCh---hhcCC
Confidence 8732 4678999999999 99998887 48899
Q ss_pred CCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 376 PKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 376 ~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
++|++|++++|++.+.. .++.+++|+.|+++.
T Consensus 195 ~~L~~L~L~~N~l~~~~--------~l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 195 PNLIEVHLKNNQISDVS--------PLANTSNLFIVTLTN 226 (308)
T ss_dssp TTCCEEECTTSCCCBCG--------GGTTCTTCCEEEEEE
T ss_pred CCCCEEEccCCccCccc--------cccCCCCCCEEEccC
Confidence 99999999999998532 167899999998763
No 78
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=99.84 E-value=4.2e-21 Score=142.85 Aligned_cols=72 Identities=35% Similarity=0.658 Sum_probs=65.3
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccCC
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSP 80 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~ 80 (418)
..+.||+||.+.+. .+.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|++++++..
T Consensus 11 ~~~~vG~rv~v~~~-~~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~-~~~G~Fvr~~~v~~ 82 (93)
T 1txq_A 11 RPLRVGSRVEVIGK-GHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCD-EGHGIFVRQSQIQV 82 (93)
T ss_dssp CCCCTTCEEEETTT-CCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCC-TTCEEEECGGGEEE
T ss_pred ccCCCCCEEEECCC-CeEEEEEEeeecCCCCCcEEEEEeCCCCCCCCCEECCEEeeecC-CCeEEEEcHHHeEE
Confidence 46999999999653 26799999999999999999999999999999999999999997 59999999998754
No 79
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=4.4e-21 Score=204.27 Aligned_cols=239 Identities=21% Similarity=0.293 Sum_probs=134.1
Q ss_pred HHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCC
Q 014792 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLK 205 (418)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~ 205 (418)
.+..+++|+.|+|++|.+....+.....+++|++|+|++|.+..+ .|..+..+++|++|++++|++....+ .+..++
T Consensus 285 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 362 (844)
T 3j0a_A 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL--YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362 (844)
T ss_dssp CSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC--CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred hhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc--CHHHhcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence 345566666666666666555442222236666666666666542 24455566666666666666655544 355666
Q ss_pred CccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCC
Q 014792 206 SIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLE 285 (418)
Q Consensus 206 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~ 285 (418)
+|++|++++|.++. + ..+++|+.|++++|.++.++.. ..+++.|++++|.+.+.+....+..+++|+
T Consensus 363 ~L~~L~Ls~N~l~~--i----~~~~~L~~L~l~~N~l~~l~~~-------~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~ 429 (844)
T 3j0a_A 363 KLQTLDLRDNALTT--I----HFIPSIPDIFLSGNKLVTLPKI-------NLTANLIHLSENRLENLDILYFLLRVPHLQ 429 (844)
T ss_dssp CCCEEEEETCCSCC--C----SSCCSCSEEEEESCCCCCCCCC-------CTTCCEEECCSCCCCSSTTHHHHTTCTTCC
T ss_pred CCCEEECCCCCCCc--c----cCCCCcchhccCCCCccccccc-------ccccceeecccCccccCchhhhhhcCCccc
Confidence 66666666666552 1 2356666666666666654321 356788888888888766545567889999
Q ss_pred EEecCCCCCCcccCCCC---CchhhhhccccccCc----------cccCCCCCcEEEccCC--CCCCCC--Cccchhhhh
Q 014792 286 QLYLNKNNLNRIYYPNN---DTIHELVSAHESHEE----------SYLPFQNLCCLLLGNS--KKLPTS--SHVSFVVYF 348 (418)
Q Consensus 286 ~L~l~~n~l~~~~~~~~---~~~~~~~~~~~~~~~----------~~~~l~~L~~L~L~~n--~~i~~~--~~~~~l~~~ 348 (418)
.|++++|+++....... ...++.++++.|... .+..+++|+.|+|++| ..++.. ..++
T Consensus 430 ~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~----- 504 (844)
T 3j0a_A 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT----- 504 (844)
T ss_dssp EEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCC-----
T ss_pred eeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchh-----
Confidence 99999999887643222 233444455554332 2344556666666655 222221 1122
Q ss_pred hhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCC
Q 014792 349 LIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDP 391 (418)
Q Consensus 349 ~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~ 391 (418)
.|+.|+++ +|.+..++. ..+. ++|+.|+|++|.+...
T Consensus 505 --~L~~L~Ls-~N~l~~l~~-~~~~--~~L~~L~Ls~N~l~~~ 541 (844)
T 3j0a_A 505 --ALRGLSLN-SNRLTVLSH-NDLP--ANLEILDISRNQLLAP 541 (844)
T ss_dssp --SCSEEEEE-SCCCSSCCC-CCCC--SCCCEEEEEEECCCCC
T ss_pred --hhheeECC-CCCCCccCh-hhhh--ccccEEECCCCcCCCC
Confidence 23344444 555555543 1222 5566666666655543
No 80
>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.84 E-value=3.2e-21 Score=142.48 Aligned_cols=72 Identities=32% Similarity=0.584 Sum_probs=65.4
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccCC
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSP 80 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~ 80 (418)
..++||+||.+.+. .+.|||||+|++++.++.|+|||||+|.|||||+++|++||+|. +++|.|++++++..
T Consensus 11 ~~~~vG~rV~V~~~-~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-~~~G~Fvr~~~v~~ 82 (91)
T 1whk_A 11 VKLHEGSQVLLTSS-NEMATVRYVGPTDFASGIWLGLELRSAKGKNDGAVGDKRYFTCK-PNYGVLVRPSRVTY 82 (91)
T ss_dssp CCCCSSCEEEESSS-CCEEEECCCEECSSSSSEEEEEECSSSCSSCCSEETTEECCCCS-TTCCCEECGGGEEC
T ss_pred ccccCCCEEEECCC-CeEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEEeecC-CCeEEEEchHHcEE
Confidence 57999999999752 26799999999999999999999999999999999999999997 69999999998753
No 81
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.84 E-value=2.2e-21 Score=180.82 Aligned_cols=188 Identities=22% Similarity=0.258 Sum_probs=124.6
Q ss_pred eecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEEecCC
Q 014792 136 SAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCT 215 (418)
Q Consensus 136 ~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n 215 (418)
.+.+....+.+.. ....+ ++|++|++++|.+..++ .+..+++|++|++++|++++.++ +..+++|++|++++|
T Consensus 28 ~~~l~~~~~~~~~-~~~~l-~~L~~L~l~~~~i~~~~----~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 28 KDNLKKKSVTDAV-TQNEL-NSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHTTCSCTTSEE-CHHHH-HTCCEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred HHHhcCCCccccc-chhhc-CcccEEEccCCCcccCh----hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC
Confidence 3445555444432 23333 67777777777776542 25667777777777777776554 667777777777777
Q ss_pred CCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCC
Q 014792 216 GVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLN 295 (418)
Q Consensus 216 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~ 295 (418)
.++. ++. +..+++|++|++++|.+++++ .+..+++|+.|++++|.+.+++ .+..+++|+.|++++|.++
T Consensus 101 ~l~~--~~~-l~~l~~L~~L~L~~n~i~~~~-----~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~ 169 (291)
T 1h6t_A 101 KVKD--LSS-LKDLKKLKSLSLEHNGISDIN-----GLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLEDNQIS 169 (291)
T ss_dssp CCCC--GGG-GTTCTTCCEEECTTSCCCCCG-----GGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCC
T ss_pred cCCC--Chh-hccCCCCCEEECCCCcCCCCh-----hhcCCCCCCEEEccCCcCCcch---hhccCCCCCEEEccCCccc
Confidence 7663 333 466777777777777777653 3566777777777777777753 3666777777777777777
Q ss_pred cccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCC
Q 014792 296 RIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSF 375 (418)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~ 375 (418)
++.+ +..+++|+.|+++ +|.+.+++ .+..+
T Consensus 170 ~~~~-------------------l~~l~~L~~L~L~----------------------------~N~i~~l~---~l~~l 199 (291)
T 1h6t_A 170 DIVP-------------------LAGLTKLQNLYLS----------------------------KNHISDLR---ALAGL 199 (291)
T ss_dssp CCGG-------------------GTTCTTCCEEECC----------------------------SSCCCBCG---GGTTC
T ss_pred cchh-------------------hcCCCccCEEECC----------------------------CCcCCCCh---hhccC
Confidence 6632 3556777777777 77777665 46777
Q ss_pred CCCceEEcCCCCCCCC
Q 014792 376 PKLMDIRLSENPVSDP 391 (418)
Q Consensus 376 ~~L~~L~l~~N~l~~~ 391 (418)
++|+.|++++|++...
T Consensus 200 ~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 200 KNLDVLELFSQECLNK 215 (291)
T ss_dssp TTCSEEEEEEEEEECC
T ss_pred CCCCEEECcCCcccCC
Confidence 7777777777777654
No 82
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.84 E-value=5.5e-21 Score=151.19 Aligned_cols=74 Identities=36% Similarity=0.712 Sum_probs=67.4
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccCCCCc
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPGIS 83 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~~~s 83 (418)
..+.||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. +++|.|+++.++....+
T Consensus 63 ~~l~VG~RV~V~G~--~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~-p~~GiFVrp~kv~~~~~ 136 (141)
T 2cp5_A 63 DDFRVGERVWVNGN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCE-PLKGIFTRPSKLTRKVS 136 (141)
T ss_dssp CCCCTTCEEEETTS--CEEEEEEEEECSSSSSEEEEEEESSSCCSCBSEETTEESSCCC-TTTEEEECGGGEESSCC
T ss_pred hcCcCCCEEEECCC--cEEEEEEeeecCCCCCcEEEEEeCCCCCccCCEECCEEeeecC-CCcEEEechHHeeeccC
Confidence 56999999999874 5699999999999999999999999999999999999999997 59999999998876543
No 83
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.84 E-value=6.8e-21 Score=147.60 Aligned_cols=70 Identities=31% Similarity=0.649 Sum_probs=65.4
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccC
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLS 79 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~ 79 (418)
..+.||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||.|. +++|.|+++.++.
T Consensus 30 ~~l~VG~RV~V~g~--~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~-p~~GiFVr~~kv~ 99 (122)
T 2coz_A 30 FDFHIGDRVLIGNV--QPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECK-EKHGIFAPPQKIS 99 (122)
T ss_dssp SSCCTTEEEEETTT--EEEEEEEEEECSSSSSEEEEEEESSTTSSBCSEETTEECCCCC-SSCEEEECGGGEE
T ss_pred ccCcCCCEEEECCC--cEEEEEEecccCCCCCeEEEEEeCCCCCccCCEECCEEeeecC-CCcEEEecHHHCc
Confidence 47999999999774 6799999999999999999999999999999999999999998 5899999999875
No 84
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=99.84 E-value=4.8e-21 Score=147.31 Aligned_cols=74 Identities=39% Similarity=0.702 Sum_probs=66.5
Q ss_pred CCCCCCCEEEeC--CCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccCCC
Q 014792 7 ESYKLGQRVHSA--NDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (418)
Q Consensus 7 ~~~~~g~rv~~~--~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~~ 81 (418)
..+.||+||.+. ++..+.|||||+|++++.+|.|+|||||+|.|||||+++|++||.|. +++|.|++++++..+
T Consensus 31 ~~~~VG~RV~V~~~g~~~~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~GiFvr~~~v~~g 106 (113)
T 1whg_A 31 SAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPLGKNDGSVNGKRYFECQ-AKYGAFVKPSAVTVG 106 (113)
T ss_dssp TTSCSSCEEEECCSSSSCEEEEEEEEEECSSSSSEEEEEEESSSCCSBBSEETTEECSCCC-TTTEEEECGGGEEEE
T ss_pred hcCCCCCEEEEecCCCcceEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEEeeeC-CCeEEEECHHHeEEC
Confidence 468999999995 32247899999999999999999999999999999999999999998 599999999988655
No 85
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=7.1e-21 Score=188.39 Aligned_cols=220 Identities=18% Similarity=0.151 Sum_probs=139.9
Q ss_pred HhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCc
Q 014792 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (418)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L 207 (418)
++++++|++|++++|.++.++.. .++|++|++++|.+..+ | .++.+++|++|++++|++++.+.. ..+|
T Consensus 149 ~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l---~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L 217 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEEL---P-ELQNLPFLTAIYADNNSLKKLPDL---PLSL 217 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSC---C-CCTTCTTCCEEECCSSCCSSCCCC---CTTC
T ss_pred cCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcC---c-cccCCCCCCEEECCCCcCCcCCCC---cCcc
Confidence 55666666666666666654321 24666666666666642 2 356666666666666666653321 1366
Q ss_pred cEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEE
Q 014792 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287 (418)
Q Consensus 208 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L 287 (418)
++|++++|.+. .++. ++.+++|++|++++|.+++++.. +++|+.|++++|.+.+++. .+++|+.|
T Consensus 218 ~~L~l~~n~l~--~lp~-~~~l~~L~~L~l~~N~l~~l~~~-------~~~L~~L~l~~N~l~~l~~-----~~~~L~~L 282 (454)
T 1jl5_A 218 ESIVAGNNILE--ELPE-LQNLPFLTTIYADNNLLKTLPDL-------PPSLEALNVRDNYLTDLPE-----LPQSLTFL 282 (454)
T ss_dssp CEEECCSSCCS--SCCC-CTTCTTCCEEECCSSCCSSCCSC-------CTTCCEEECCSSCCSCCCC-----CCTTCCEE
T ss_pred cEEECcCCcCC--cccc-cCCCCCCCEEECCCCcCCccccc-------ccccCEEECCCCcccccCc-----ccCcCCEE
Confidence 66666666665 2333 45666677777777766654421 2567777777776666442 13677778
Q ss_pred ecCCCCCCcccCCCCCchhhhhccccccCccccCC-CCCcEEEccCC--CCCCCCCccchhhhhhhhhhhccCCCCCCcC
Q 014792 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPF-QNLCCLLLGNS--KKLPTSSHVSFVVYFLIFAFSLHASGNNMIE 364 (418)
Q Consensus 288 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n--~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~ 364 (418)
++++|.++++ +.....++.++++.|....+..+ ++|+.|++++| ..+|.. ...|+.|+++ +|.+.
T Consensus 283 ~ls~N~l~~l--~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---------~~~L~~L~L~-~N~l~ 350 (454)
T 1jl5_A 283 DVSENIFSGL--SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---------PPRLERLIAS-FNHLA 350 (454)
T ss_dssp ECCSSCCSEE--SCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---------CTTCCEEECC-SSCCS
T ss_pred ECcCCccCcc--cCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc---------CCcCCEEECC-CCccc
Confidence 8888777775 33334566777777776666666 47888888887 344443 2457788887 78888
Q ss_pred CCcccccccCCCCCceEEcCCCCCCC
Q 014792 365 DLASIDSLDSFPKLMDIRLSENPVSD 390 (418)
Q Consensus 365 ~~~~~~~l~~~~~L~~L~l~~N~l~~ 390 (418)
.+|. .+++|++|++++|++..
T Consensus 351 ~lp~-----~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 351 EVPE-----LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp CCCC-----CCTTCCEEECCSSCCSS
T ss_pred cccc-----hhhhccEEECCCCCCCc
Confidence 8773 47889999999999986
No 86
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=1.7e-20 Score=172.88 Aligned_cols=198 Identities=21% Similarity=0.235 Sum_probs=164.3
Q ss_pred CCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccE
Q 014792 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEE 234 (418)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 234 (418)
.+.+.++++++.++.+ |..+ .++|++|++++|++...++ .+..+++|++|++++|.++. ..+..+..+++|++
T Consensus 16 ~~~~~l~~~~~~l~~i---p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAI---PSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLET 89 (270)
T ss_dssp TTTTEEECTTSCCSSC---CSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CCTTTTSSCTTCCE
T ss_pred CCCCEEEccCCCCCcc---CCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eChhhhcCCCCCCE
Confidence 4688999999999964 3322 3579999999999998876 68899999999999999874 23334477999999
Q ss_pred EEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccc
Q 014792 235 LHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHES 314 (418)
Q Consensus 235 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 314 (418)
|++++|.++.+++. .+..+++|++|++++|.+...++ ..+..+++|++|++++|.++.+....
T Consensus 90 L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~------------- 152 (270)
T 2o6q_A 90 LWVTDNKLQALPIG---VFDQLVNLAELRLDRNQLKSLPP-RVFDSLTKLTYLSLGYNELQSLPKGV------------- 152 (270)
T ss_dssp EECCSSCCCCCCTT---TTTTCSSCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTT-------------
T ss_pred EECCCCcCCcCCHh---HcccccCCCEEECCCCccCeeCH-HHhCcCcCCCEEECCCCcCCccCHhH-------------
Confidence 99999999988765 57888999999999999998875 56889999999999999999874222
Q ss_pred cCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCc
Q 014792 315 HEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRG 394 (418)
Q Consensus 315 ~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~ 394 (418)
+..+++|+.|+|+ +|.+..++. ..+..+++|++|++++|++.....
T Consensus 153 ----~~~l~~L~~L~L~----------------------------~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~- 198 (270)
T 2o6q_A 153 ----FDKLTSLKELRLY----------------------------NNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVPE- 198 (270)
T ss_dssp ----TTTCTTCCEEECC----------------------------SSCCSCCCT-TTTTTCTTCCEEECCSSCCSCCCT-
T ss_pred ----ccCCcccceeEec----------------------------CCcCcEeCh-hHhccCCCcCEEECCCCcCCcCCH-
Confidence 5788999999999 999988875 468889999999999999985442
Q ss_pred chhHHHHHHhhCCceeecCcc
Q 014792 395 GISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 395 ~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
..++.+++|+.|+++.
T Consensus 199 -----~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 199 -----GAFDSLEKLKMLQLQE 214 (270)
T ss_dssp -----TTTTTCTTCCEEECCS
T ss_pred -----HHhccccCCCEEEecC
Confidence 1246789999998864
No 87
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.83 E-value=2.1e-21 Score=199.31 Aligned_cols=206 Identities=19% Similarity=0.164 Sum_probs=151.2
Q ss_pred HHhcccccceecccCcCcCCCC--C-chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC--CC
Q 014792 127 KFSKFEELTSAALPYLGVSSPG--A-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT--GL 201 (418)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~--~-~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~--~l 201 (418)
.+..+++|++|++++|.++..+ + .+.. +++|++|++++|.+.. +|..+..+++|++|++++|++.+.++ .+
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~-~~~L~~L~L~~n~l~~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLG-TNSLRHLDLSFNGAII---MSANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHC-CSCCCEEECCSCSEEE---ECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhcc-CCcccEeECCCCcccc---chhhccCCCCCCeeECCCCccCCccChhhh
Confidence 3456778888888888877653 2 3444 4889999999988775 45667888899999999998887765 57
Q ss_pred CCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCc-cCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCC
Q 014792 202 PQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISE-ITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQ 280 (418)
Q Consensus 202 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~ 280 (418)
..+++|++|++++|.+.. ..+..+..+++|++|++++|.+.+ ..+. .++.+++|+.|++++|.+++.++ ..+..
T Consensus 421 ~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~ 495 (606)
T 3vq2_A 421 LSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSN---VFANTTNLTFLDLSKCQLEQISW-GVFDT 495 (606)
T ss_dssp TTCTTCCEEECTTSCCEE-CCTTTTTTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTSCCCEECT-TTTTT
T ss_pred hccccCCEEECcCCCCCc-cchhhhcCCCCCCEEECCCCcCCCcchHH---hhccCCCCCEEECCCCcCCccCh-hhhcc
Confidence 788899999999888765 344555788889999999998876 2332 47788899999999998887654 56788
Q ss_pred CCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCC--CCCCCCCccchhhhhhhhhhhccCC
Q 014792 281 IRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNS--KKLPTSSHVSFVVYFLIFAFSLHAS 358 (418)
Q Consensus 281 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n--~~i~~~~~~~~l~~~~~~l~~l~~~ 358 (418)
+++|++|++++|+++++.+.. +..+++|+.|+|++| ..+|.. +..+..+|+.|+++
T Consensus 496 l~~L~~L~Ls~N~l~~~~~~~-----------------~~~l~~L~~L~l~~N~l~~~p~~-----~~~l~~~L~~l~l~ 553 (606)
T 3vq2_A 496 LHRLQLLNMSHNNLLFLDSSH-----------------YNQLYSLSTLDCSFNRIETSKGI-----LQHFPKSLAFFNLT 553 (606)
T ss_dssp CTTCCEEECCSSCCSCEEGGG-----------------TTTCTTCCEEECTTSCCCCEESC-----GGGSCTTCCEEECC
T ss_pred cccCCEEECCCCcCCCcCHHH-----------------ccCCCcCCEEECCCCcCcccCHh-----HhhhcccCcEEEcc
Confidence 889999999999888874333 577788888888888 334433 22222346677777
Q ss_pred CCCCcC
Q 014792 359 GNNMIE 364 (418)
Q Consensus 359 ~~n~i~ 364 (418)
+|.+.
T Consensus 554 -~N~~~ 558 (606)
T 3vq2_A 554 -NNSVA 558 (606)
T ss_dssp -SCCCC
T ss_pred -CCCcc
Confidence 66653
No 88
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=2.1e-21 Score=206.74 Aligned_cols=251 Identities=18% Similarity=0.107 Sum_probs=134.5
Q ss_pred HHHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHH--hhcCCCCCEEEcCCCCCCCccC--C
Q 014792 125 QDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAF--GEQLPALAVLNLSNNLMSKEVT--G 200 (418)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~--~~~l~~L~~L~Ls~n~l~~~~~--~ 200 (418)
|..+.++++|++|+|++|.+....+.....+++|++|+|++|.+.+ .+|.. ++.+++|++|++++|.+.+..+ .
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~ 143 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD--AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS--CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGG
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc--ccccCccccccCCCCEEECCCCcccccccchh
Confidence 3455666666666666666665544222223666666666666654 22222 5566666666666666655433 3
Q ss_pred CCCCCCccEEEecCCCCCHHHHHHHHhcC--CcccEEEccCCCCCccCCCCCCccCCCC------CccEEeCCCCCCCCh
Q 014792 201 LPQLKSIRILVLNCTGVNWMQVEILKHSL--PALEELHLMGNSISEITPVSSPIVQGFD------NLQLLNLEDNCIAEW 272 (418)
Q Consensus 201 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~l~------~L~~L~L~~n~l~~~ 272 (418)
+..+++|++|++++|.+... .+..+..+ ++|+.|+++.|.+....+. .++.+. +|+.|++++|.+...
T Consensus 144 ~~~L~~L~~L~Ls~N~i~~~-~~~~l~~l~~~~L~~L~L~~n~l~~~~~~---~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 219 (844)
T 3j0a_A 144 FGKLNSLKSIDFSSNQIFLV-CEHELEPLQGKTLSFFSLAANSLYSRVSV---DWGKCMNPFRNMVLEILDVSGNGWTVD 219 (844)
T ss_dssp GGTCSSCCEEEEESSCCCCC-CSGGGHHHHHCSSCCCEECCSBSCCCCCC---CCCSSSCTTTTCCBSEEBCSSCCSSTT
T ss_pred HhhCCCCCEEECCCCcCCee-CHHHcccccCCccceEECCCCcccccccc---chhhcCCccccCceeEEecCCCcCchh
Confidence 55666666666666655431 11111222 5666666666665543322 233333 388888888865432
Q ss_pred hhh-----------------------------------hhcCC--CCCCCEEecCCCCCCcccCCCC--Cchhhhhcccc
Q 014792 273 SEI-----------------------------------LKLCQ--IRSLEQLYLNKNNLNRIYYPNN--DTIHELVSAHE 313 (418)
Q Consensus 273 ~~l-----------------------------------~~l~~--l~~L~~L~l~~n~l~~~~~~~~--~~~~~~~~~~~ 313 (418)
.+- ..+.. .++|+.|++++|.++.+.+... ...++.++++.
T Consensus 220 ~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 299 (844)
T 3j0a_A 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY 299 (844)
T ss_dssp TTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEES
T ss_pred HHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCC
Confidence 110 01111 2568888888888776643322 23455555655
Q ss_pred ccC-----ccccCCCCCcEEEccCCC--CC-CCC-CccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcC
Q 014792 314 SHE-----ESYLPFQNLCCLLLGNSK--KL-PTS-SHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLS 384 (418)
Q Consensus 314 ~~~-----~~~~~l~~L~~L~L~~n~--~i-~~~-~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~ 384 (418)
|.. ..+..+++|+.|+|++|. .+ +.. ..+ ..|+.|+++ +|.+..++. ..+..+++|++|+++
T Consensus 300 n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-------~~L~~L~L~-~N~i~~~~~-~~~~~l~~L~~L~Ls 370 (844)
T 3j0a_A 300 NKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL-------PKVAYIDLQ-KNHIAIIQD-QTFKFLEKLQTLDLR 370 (844)
T ss_dssp CCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSC-------TTCCEEECC-SCCCCCCCS-SCSCSCCCCCEEEEE
T ss_pred CcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCC-------CCCCEEECC-CCCCCccCh-hhhcCCCCCCEEECC
Confidence 542 344556677777777662 22 211 111 234555665 556666653 356667777777777
Q ss_pred CCCCCC
Q 014792 385 ENPVSD 390 (418)
Q Consensus 385 ~N~l~~ 390 (418)
+|.+..
T Consensus 371 ~N~l~~ 376 (844)
T 3j0a_A 371 DNALTT 376 (844)
T ss_dssp TCCSCC
T ss_pred CCCCCc
Confidence 777663
No 89
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=2e-19 Score=182.34 Aligned_cols=229 Identities=21% Similarity=0.270 Sum_probs=163.1
Q ss_pred hHHHHHhcccccceecccCcCcCCCCC-----------------------------------chhhhcCCccEEEcCCCC
Q 014792 123 KIQDKFSKFEELTSAALPYLGVSSPGA-----------------------------------NIGTIVTNLKELDLTGNL 167 (418)
Q Consensus 123 ~l~~~~~~l~~L~~L~L~~~~i~~~~~-----------------------------------~~~~~~~~L~~L~Ls~n~ 167 (418)
.++..+..+..|+.+++++|.+.+.+. .+...+++|++|++++|.
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence 444555677888888888887654321 011223567778888877
Q ss_pred CCChHHHHHHh-hcCCCCCEEEcCCCCCCCccC----CCCCCCCccEEEecCCCCCHHHH-HHHHhcCCcccEEEccCCC
Q 014792 168 LSDWKDIGAFG-EQLPALAVLNLSNNLMSKEVT----GLPQLKSIRILVLNCTGVNWMQV-EILKHSLPALEELHLMGNS 241 (418)
Q Consensus 168 l~~~~~l~~~~-~~l~~L~~L~Ls~n~l~~~~~----~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~ 241 (418)
+.. +|..+ ..+++|++|++++|++.+..+ .+..+++|++|++++|.++.... ...+..+++|++|++++|.
T Consensus 322 l~~---ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 398 (549)
T 2z81_A 322 VFL---VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398 (549)
T ss_dssp CCC---CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred ccc---CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence 764 34433 578888888888888876432 36677888888888888875332 2456778888888888888
Q ss_pred CCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccC
Q 014792 242 ISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLP 321 (418)
Q Consensus 242 l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (418)
++.++.. +..+++|++|++++|.+..++. .+ .++|+.|++++|+++++ ...
T Consensus 399 l~~lp~~----~~~~~~L~~L~Ls~N~l~~l~~--~~--~~~L~~L~Ls~N~l~~~---------------------~~~ 449 (549)
T 2z81_A 399 FHPMPDS----CQWPEKMRFLNLSSTGIRVVKT--CI--PQTLEVLDVSNNNLDSF---------------------SLF 449 (549)
T ss_dssp CCCCCSC----CCCCTTCCEEECTTSCCSCCCT--TS--CTTCSEEECCSSCCSCC---------------------CCC
T ss_pred CccCChh----hcccccccEEECCCCCcccccc--hh--cCCceEEECCCCChhhh---------------------ccc
Confidence 8866543 6677888888888888876553 11 25788888888888775 345
Q ss_pred CCCCcEEEccCC--CCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCC
Q 014792 322 FQNLCCLLLGNS--KKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 392 (418)
Q Consensus 322 l~~L~~L~L~~n--~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~ 392 (418)
+++|++|+|++| +.+|... ....|+.|+++ +|.+..++. ..+..+++|+.|++++|++.+++
T Consensus 450 l~~L~~L~Ls~N~l~~ip~~~-------~l~~L~~L~Ls-~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 450 LPRLQELYISRNKLKTLPDAS-------LFPVLLVMKIS-RNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CTTCCEEECCSSCCSSCCCGG-------GCTTCCEEECC-SSCCCCCCT-TGGGGCTTCCEEECCSSCBCCCH
T ss_pred CChhcEEECCCCccCcCCCcc-------cCccCCEEecC-CCccCCcCH-HHHhcCcccCEEEecCCCccCCC
Confidence 788999999988 4555432 23457788888 788888764 46889999999999999998765
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=6.5e-20 Score=167.14 Aligned_cols=181 Identities=23% Similarity=0.251 Sum_probs=110.2
Q ss_pred cccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEE
Q 014792 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILV 211 (418)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~ 211 (418)
...+.++++++.++.++..+. +++++|+|++|.+..+. +..+..+++|++|++++|.+++.++.
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~----------- 77 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATLS--DATFRGLTKLTWLNLDYNQLQTLSAG----------- 77 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC---TTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCCCCCTT-----------
T ss_pred CCCeEEecCCCCccccCCCCC---CCCCEEEccCCCcCccC--HhHhcCcccCCEEECCCCcCCccCHh-----------
Confidence 345566666666666654432 46666666666666532 34455666666666666666554432
Q ss_pred ecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCC
Q 014792 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNK 291 (418)
Q Consensus 212 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~ 291 (418)
.+..+++|++|++++|.++.+++. .+..+++|++|+|++|.++.+++ ..+..+++|++|++++
T Consensus 78 -------------~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~ 140 (251)
T 3m19_A 78 -------------VFDDLTELGTLGLANNQLASLPLG---VFDHLTQLDKLYLGGNQLKSLPS-GVFDRLTKLKELRLNT 140 (251)
T ss_dssp -------------TTTTCTTCCEEECTTSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCS
T ss_pred -------------HhccCCcCCEEECCCCcccccChh---HhcccCCCCEEEcCCCcCCCcCh-hHhccCCcccEEECcC
Confidence 223455566666666666655543 35566677777777777666553 3456667777777777
Q ss_pred CCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCccccc
Q 014792 292 NNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDS 371 (418)
Q Consensus 292 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~ 371 (418)
|.|+.+.+.. +..+++|+.|+|+ +|.+..++. ..
T Consensus 141 N~l~~~~~~~-----------------~~~l~~L~~L~L~----------------------------~N~l~~~~~-~~ 174 (251)
T 3m19_A 141 NQLQSIPAGA-----------------FDKLTNLQTLSLS----------------------------TNQLQSVPH-GA 174 (251)
T ss_dssp SCCCCCCTTT-----------------TTTCTTCCEEECC----------------------------SSCCSCCCT-TT
T ss_pred CcCCccCHHH-----------------cCcCcCCCEEECC----------------------------CCcCCccCH-HH
Confidence 7776663211 4566777777777 777766653 35
Q ss_pred ccCCCCCceEEcCCCCCCCC
Q 014792 372 LDSFPKLMDIRLSENPVSDP 391 (418)
Q Consensus 372 l~~~~~L~~L~l~~N~l~~~ 391 (418)
+..+++|+.|+|++|++...
T Consensus 175 ~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 175 FDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTCTTCCEEECCSCCBCTT
T ss_pred HhCCCCCCEEEeeCCceeCC
Confidence 66677777777777777655
No 91
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.83 E-value=1.6e-20 Score=143.74 Aligned_cols=72 Identities=35% Similarity=0.658 Sum_probs=65.2
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccCC
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSP 80 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~ 80 (418)
..+.||+||.+.+. .+.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. ++.|.|+++.++..
T Consensus 32 ~~l~VG~RV~V~~~-g~~GtVRyvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~-p~~GiFVr~~~v~~ 103 (112)
T 2coy_A 32 RPLRVGSRVEVIGK-GHRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCD-EGHGIFVRQSQIQV 103 (112)
T ss_dssp CCCCTTCEEEETTT-CCEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCC-TTTEEEECGGGEEE
T ss_pred ccCCCCCEEEECCC-CeEEEEEEeeecCCCCCcEEEEEECCCCCCCCCEECCEEeeecC-CCeEEEEchHHeEE
Confidence 46999999999654 26799999999999999999999999999999999999999997 59999999987653
No 92
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=5.5e-21 Score=194.66 Aligned_cols=211 Identities=19% Similarity=0.173 Sum_probs=122.2
Q ss_pred cccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccE
Q 014792 130 KFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRI 209 (418)
Q Consensus 130 ~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~ 209 (418)
.+++|+.|++++|.+....+. ..+++|++|++++|.+.....++..+..+++|++|++++|.+...++.+..+++|++
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~ 400 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 400 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCE
T ss_pred cccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCE
Confidence 444455555555444333222 223566666666666554322234455566666666666665554444555666666
Q ss_pred EEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCC--hhhhhhcCCCCCCCEE
Q 014792 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAE--WSEILKLCQIRSLEQL 287 (418)
Q Consensus 210 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~l~~l~~l~~L~~L 287 (418)
|++++|.+........+..+++|++|++++|.+....+. .+..+++|++|++++|.+.+ .+ ..+..+++|+.|
T Consensus 401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~p--~~~~~l~~L~~L 475 (570)
T 2z63_A 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG---IFNGLSSLEVLKMAGNSFQENFLP--DIFTELRNLTFL 475 (570)
T ss_dssp EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT---TTTTCTTCCEEECTTCEEGGGEEC--SCCTTCTTCCEE
T ss_pred EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh---hhhcCCcCcEEECcCCcCccccch--hhhhcccCCCEE
Confidence 666666554321112334556666666666665554433 35555666666666665542 12 345556666666
Q ss_pred ecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCc
Q 014792 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLA 367 (418)
Q Consensus 288 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~ 367 (418)
++++|+++++.+.. +..+++|+.|+++ +|.+..++
T Consensus 476 ~l~~n~l~~~~~~~-----------------~~~l~~L~~L~l~----------------------------~n~l~~~~ 510 (570)
T 2z63_A 476 DLSQCQLEQLSPTA-----------------FNSLSSLQVLNMA----------------------------SNQLKSVP 510 (570)
T ss_dssp ECTTSCCCEECTTT-----------------TTTCTTCCEEECC----------------------------SSCCSCCC
T ss_pred ECCCCccccCChhh-----------------hhcccCCCEEeCC----------------------------CCcCCCCC
Confidence 66666665553222 4556666666666 88998886
Q ss_pred ccccccCCCCCceEEcCCCCCCCCCC
Q 014792 368 SIDSLDSFPKLMDIRLSENPVSDPGR 393 (418)
Q Consensus 368 ~~~~l~~~~~L~~L~l~~N~l~~~~~ 393 (418)
. ..+..+++|++|++++|++.+.+.
T Consensus 511 ~-~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 511 D-GIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp T-TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred H-HHhhcccCCcEEEecCCcccCCCc
Confidence 4 468899999999999999998764
No 93
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=3.1e-21 Score=192.71 Aligned_cols=212 Identities=23% Similarity=0.207 Sum_probs=173.3
Q ss_pred cCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccE
Q 014792 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEE 234 (418)
Q Consensus 155 ~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 234 (418)
+++|++|+|++|.+.++ .|..+..+++|++|+|++|.+++.++ +..+++|++|++++|.++. + ...++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~--l----~~~~~L~~ 103 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQI--SAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE--L----LVGPSIET 103 (487)
T ss_dssp GGGCCEEECCSSCCCCC--CGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE--E----EECTTCCE
T ss_pred CCCccEEEeeCCcCCCC--CHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC--C----CCCCCcCE
Confidence 46999999999999984 36788999999999999999987765 8899999999999998874 2 34589999
Q ss_pred EEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccc
Q 014792 235 LHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHES 314 (418)
Q Consensus 235 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~ 314 (418)
|++++|.++.+++. .+++|+.|+|++|.+.+.++ ..++.+++|+.|++++|.+++..+...
T Consensus 104 L~L~~N~l~~~~~~------~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l------------ 164 (487)
T 3oja_A 104 LHAANNNISRVSCS------RGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTVNFAEL------------ 164 (487)
T ss_dssp EECCSSCCCCEEEC------CCSSCEEEECCSSCCCSGGG-BCGGGGSSEEEEECTTSCCCEEEGGGG------------
T ss_pred EECcCCcCCCCCcc------ccCCCCEEECCCCCCCCCCc-hhhcCCCCCCEEECCCCCCCCcChHHH------------
Confidence 99999999987643 46899999999999999865 567889999999999999998754432
Q ss_pred cCccccCCCCCcEEEccCCC--CCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCC
Q 014792 315 HEESYLPFQNLCCLLLGNSK--KLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 392 (418)
Q Consensus 315 ~~~~~~~l~~L~~L~L~~n~--~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~ 392 (418)
...+++|+.|+|++|. .++.... ...|+.|+++ +|.+..++. .+..+++|+.|+|++|.+...+
T Consensus 165 ----~~~l~~L~~L~Ls~N~l~~~~~~~~-------l~~L~~L~Ls-~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~lp 230 (487)
T 3oja_A 165 ----AASSDTLEHLNLQYNFIYDVKGQVV-------FAKLKTLDLS-SNKLAFMGP--EFQSAAGVTWISLRNNKLVLIE 230 (487)
T ss_dssp ----GGGTTTCCEEECTTSCCCEEECCCC-------CTTCCEEECC-SSCCCEECG--GGGGGTTCSEEECTTSCCCEEC
T ss_pred ----hhhCCcccEEecCCCcccccccccc-------CCCCCEEECC-CCCCCCCCH--hHcCCCCccEEEecCCcCcccc
Confidence 2368999999999993 3333322 3456778887 888988874 5889999999999999998532
Q ss_pred CcchhHHHHHHhhCCceeecCcc
Q 014792 393 RGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 393 ~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
. .++.+++|+.|+++.
T Consensus 231 -----~--~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 231 -----K--ALRFSQNLEHFDLRG 246 (487)
T ss_dssp -----T--TCCCCTTCCEEECTT
T ss_pred -----h--hhccCCCCCEEEcCC
Confidence 1 256788999998864
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=1.1e-20 Score=171.03 Aligned_cols=196 Identities=16% Similarity=0.154 Sum_probs=132.1
Q ss_pred ccceecccCcCcCCCCCchhhhcCCccEEEcCCCC-CCChHHHHHHhhcCCCCCEEEcCC-CCCCCccC-CCCCCCCccE
Q 014792 133 ELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNL-LSDWKDIGAFGEQLPALAVLNLSN-NLMSKEVT-GLPQLKSIRI 209 (418)
Q Consensus 133 ~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~l~~~~~~l~~L~~L~Ls~-n~l~~~~~-~l~~l~~L~~ 209 (418)
+|++|++++|.++.+++.....+++|++|++++|. +..++ +..+..+++|++|++++ |+++..++ .+..+++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~--~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE--SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC--TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC--HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 67778888887777766333334788888888875 66532 33567777888888877 77776655 4667777888
Q ss_pred EEecCCCCCHHHHHHHHhcCCccc---EEEccCC-CCCccCCCCCCccCCCCCcc-EEeCCCCCCCChhhhhhcCCCCCC
Q 014792 210 LVLNCTGVNWMQVEILKHSLPALE---ELHLMGN-SISEITPVSSPIVQGFDNLQ-LLNLEDNCIAEWSEILKLCQIRSL 284 (418)
Q Consensus 210 L~L~~n~l~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~l~~l~~l~~L 284 (418)
|++++|.++. ++. +..+++|+ +|++++| .++.+++. .+..+++|+ .|++++|.++.++. ..+.. ++|
T Consensus 110 L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~---~~~~l~~L~~~L~l~~n~l~~i~~-~~~~~-~~L 181 (239)
T 2xwt_C 110 LGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVN---AFQGLCNETLTLKLYNNGFTSVQG-YAFNG-TKL 181 (239)
T ss_dssp EEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTT---TTTTTBSSEEEEECCSCCCCEECT-TTTTT-CEE
T ss_pred EeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcc---cccchhcceeEEEcCCCCCcccCH-hhcCC-CCC
Confidence 8888777763 333 45666666 7777777 77776654 466677777 78887777776553 23333 677
Q ss_pred CEEecCCCC-CCcccCCCCCchhhhhccccccCccccCC-CCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCC
Q 014792 285 EQLYLNKNN-LNRIYYPNNDTIHELVSAHESHEESYLPF-QNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNM 362 (418)
Q Consensus 285 ~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~ 362 (418)
+.|++++|+ ++.+.+.. +..+ ++|+.|+++ +|.
T Consensus 182 ~~L~L~~n~~l~~i~~~~-----------------~~~l~~~L~~L~l~----------------------------~N~ 216 (239)
T 2xwt_C 182 DAVYLNKNKYLTVIDKDA-----------------FGGVYSGPSLLDVS----------------------------QTS 216 (239)
T ss_dssp EEEECTTCTTCCEECTTT-----------------TTTCSBCCSEEECT----------------------------TCC
T ss_pred CEEEcCCCCCcccCCHHH-----------------hhccccCCcEEECC----------------------------CCc
Confidence 777777774 77663221 4566 777777777 777
Q ss_pred cCCCcccccccCCCCCceEEcCCCC
Q 014792 363 IEDLASIDSLDSFPKLMDIRLSENP 387 (418)
Q Consensus 363 i~~~~~~~~l~~~~~L~~L~l~~N~ 387 (418)
+..+|. ..+++|+.|++++++
T Consensus 217 l~~l~~----~~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 217 VTALPS----KGLEHLKELIARNTW 237 (239)
T ss_dssp CCCCCC----TTCTTCSEEECTTC-
T ss_pred cccCCh----hHhccCceeeccCcc
Confidence 777763 156777777777664
No 95
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=2.9e-20 Score=173.15 Aligned_cols=194 Identities=21% Similarity=0.208 Sum_probs=161.5
Q ss_pred cCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCCCccEEEecCCCCCHHHHHHHHhcCCccc
Q 014792 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALE 233 (418)
Q Consensus 155 ~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 233 (418)
++++++++++++.++.+ |..+ .++++.|++++|.++...+ .+..+++|++|++++|.++. ++.. ..+++|+
T Consensus 9 l~~l~~l~~~~~~l~~i---p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~-~~l~~L~ 80 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTAL---PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVD-GTLPVLG 80 (290)
T ss_dssp STTCCEEECTTSCCSSC---CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EECC-SCCTTCC
T ss_pred cCCccEEECCCCCCCcC---CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc--ccCC-CCCCcCC
Confidence 48999999999999864 4333 3689999999999998766 68899999999999999884 3332 6889999
Q ss_pred EEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhcccc
Q 014792 234 ELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHE 313 (418)
Q Consensus 234 ~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 313 (418)
+|++++|.++.++.. +..+++|++|+|++|.++..++ ..+..+++|++|++++|+|+.+.+..
T Consensus 81 ~L~Ls~N~l~~l~~~----~~~l~~L~~L~l~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~~~~------------ 143 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLL----GQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYLKGNELKTLPPGL------------ 143 (290)
T ss_dssp EEECCSSCCSSCCCC----TTTCTTCCEEECCSSCCCCCCS-STTTTCTTCCEEECTTSCCCCCCTTT------------
T ss_pred EEECCCCcCCcCchh----hccCCCCCEEECCCCcCcccCH-HHHcCCCCCCEEECCCCCCCccChhh------------
Confidence 999999999987653 7888999999999999998875 56889999999999999999874222
Q ss_pred ccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCC
Q 014792 314 SHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGR 393 (418)
Q Consensus 314 ~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~ 393 (418)
+..+++|+.|+|+ +|.+..++. ..+..+++|+.|+|++|.+...+.
T Consensus 144 -----~~~l~~L~~L~L~----------------------------~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~ip~ 189 (290)
T 1p9a_G 144 -----LTPTPKLEKLSLA----------------------------NNNLTELPA-GLLNGLENLDTLLLQENSLYTIPK 189 (290)
T ss_dssp -----TTTCTTCCEEECT----------------------------TSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCCT
T ss_pred -----cccccCCCEEECC----------------------------CCcCCccCH-HHhcCcCCCCEEECCCCcCCccCh
Confidence 5788999999999 999999885 457889999999999999986442
Q ss_pred cchhHHHHHHhhCCceeecCc
Q 014792 394 GGISRFAIIARLGKIKILNGS 414 (418)
Q Consensus 394 ~~~~~~~~i~~l~~L~~Ln~s 414 (418)
+ +..+++|+.|+++
T Consensus 190 ~-------~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 190 G-------FFGSHLLPFAFLH 203 (290)
T ss_dssp T-------TTTTCCCSEEECC
T ss_pred h-------hcccccCCeEEeC
Confidence 1 3346678888765
No 96
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.82 E-value=1.5e-20 Score=141.00 Aligned_cols=74 Identities=26% Similarity=0.423 Sum_probs=64.4
Q ss_pred CCCCCCCEEEeC--CC-CceeeEEEEEeecC---CCCceEEEEEEeCC---CCCCCCEECCEEeeecCCCCccccccccc
Q 014792 7 ESYKLGQRVHSA--ND-ARRIGTVKYVGEVQ---GYSGTWLGVDWDYG---NGKHDGSINGVRYFQAKSQKSGSFVRVHN 77 (418)
Q Consensus 7 ~~~~~g~rv~~~--~~-~~~~gtvr~~g~~~---~~~~~w~gve~d~~---~gk~~g~~~g~~yf~~~~~~~~sf~~~~~ 77 (418)
..+.||+||.+. ++ +.+.|||||+|+++ ..++.|+|||||+| .|||||+++|++||+|. +++|.|+++++
T Consensus 6 ~~~~VG~rV~V~~~~~~~~~~GtVryvG~v~~~~~~~G~wvGVElDep~~~~GKnDGsv~G~rYF~C~-~~~G~Fv~~~~ 84 (95)
T 1whl_A 6 SGIDVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCD-EDCGVFVALDK 84 (95)
T ss_dssp CCCCSSCEEEEECSSSSCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECCCCC-TTTEEEECGGG
T ss_pred ccCcCCCEEEEecCCCccceeEEEEEeCccCcccCCCceEEEEEeCCCcccCCCCCCEECCEEEeecC-CCeEEEEcHHH
Confidence 569999999994 32 13689999999998 68899999999999 79999999999999995 69999999998
Q ss_pred cCCC
Q 014792 78 LSPG 81 (418)
Q Consensus 78 l~~~ 81 (418)
+...
T Consensus 85 v~~~ 88 (95)
T 1whl_A 85 LELI 88 (95)
T ss_dssp EEEC
T ss_pred eEEc
Confidence 7543
No 97
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=2.1e-20 Score=192.36 Aligned_cols=123 Identities=16% Similarity=0.192 Sum_probs=86.1
Q ss_pred cCCCCCCCEEecCCCCCCcccCCCC--Cchhhhhcccccc------CccccCCCCCcEEEccCCC--CC-CCC-Cccchh
Q 014792 278 LCQIRSLEQLYLNKNNLNRIYYPNN--DTIHELVSAHESH------EESYLPFQNLCCLLLGNSK--KL-PTS-SHVSFV 345 (418)
Q Consensus 278 l~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~~~~~~~~~------~~~~~~l~~L~~L~L~~n~--~i-~~~-~~~~~l 345 (418)
+..+++++.++++.|.+....+... ...++.++++.|. +..+..+++|+.|+|++|. .+ |.. ..+
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l--- 517 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL--- 517 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTC---
T ss_pred cccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCC---
Confidence 3456788899999999887654332 2345566666653 3567788999999999882 22 322 122
Q ss_pred hhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhh-CCceeecCcc
Q 014792 346 VYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARL-GKIKILNGSE 415 (418)
Q Consensus 346 ~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l-~~L~~Ln~s~ 415 (418)
.+|++|+++ +|.+..++. ..+..+++|+.|+|++|.+....... +..+ ++|+.|+++.
T Consensus 518 ----~~L~~L~Ls-~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~------l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 518 ----SSLQVLNMS-HNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKKQE------LQHFPSSLAFLNLTQ 576 (635)
T ss_dssp ----TTCCEEECT-TSCCCBCCC-GGGTTCTTCCEEECTTSCCCBCCSSC------TTCCCTTCCEEECTT
T ss_pred ----CCCCEEECC-CCcCCCCCh-hHHhCCCCCCEEECCCCcCCCCCHHH------HHhhhCcCCEEEeeC
Confidence 346778887 888888865 46889999999999999998654222 3445 5799998864
No 98
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.82 E-value=2.1e-20 Score=152.43 Aligned_cols=72 Identities=38% Similarity=0.701 Sum_probs=66.5
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCCCccccccccccCCC
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQKSGSFVRVHNLSPG 81 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~~~~sf~~~~~l~~~ 81 (418)
..++||+||.+.+. +.|||||+|++++.+|.|+|||||+|.|||||+++|++||+|. ++.|.|+++.++..+
T Consensus 37 ~~l~VG~RV~V~g~--~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~-p~~GiFVr~~kV~~~ 108 (172)
T 2cp6_A 37 RELKIGDRVLVGGT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQ-PKYGLFAPVHKVTKI 108 (172)
T ss_dssp SCCCSSCEEEETTT--EEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEECCCCC-TTTEEEEEGGGCEEC
T ss_pred ccCccCCEEEECCC--ceEEEEEeCcCCCCCCcEEEEEecCCCCccCCEECCEEeeeeC-CCeEEEechHHeEEC
Confidence 46899999999774 6799999999999999999999999999999999999999997 699999999988664
No 99
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=8.1e-21 Score=193.39 Aligned_cols=159 Identities=21% Similarity=0.180 Sum_probs=106.3
Q ss_pred HHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCC
Q 014792 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLK 205 (418)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~ 205 (418)
.+..+++|++|+|++|.+..+++.....+++|++|+|++|.+..+. |..++.+++|++|++++|+++..++ .+..++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 124 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT
T ss_pred HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccC--HhhhcCccccccccccccccccCCCccccccc
Confidence 4677788888888888777766543333478888888888777532 4567778888888888888776655 577778
Q ss_pred CccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCc----cEEeCCCCCCCChhhhhhcCCC
Q 014792 206 SIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNL----QLLNLEDNCIAEWSEILKLCQI 281 (418)
Q Consensus 206 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L----~~L~L~~n~l~~~~~l~~l~~l 281 (418)
+|++|++++|.+....++..++.+++|++|++++|.++.+++. .++.+++| +.|++++|.+...++ ..+...
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~~~~~L~l~~n~l~~~~~-~~~~~~ 200 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT---DLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEI 200 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG---GGHHHHTCTTCCCEEECTTCCCCEECT-TTTTTC
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH---HccchhccchhhhhcccCCCCceecCH-HHhccC
Confidence 8888888888776433455567778888888888877766543 34445555 677777777665543 223222
Q ss_pred CCCCEEecCCC
Q 014792 282 RSLEQLYLNKN 292 (418)
Q Consensus 282 ~~L~~L~l~~n 292 (418)
+|+.|++++|
T Consensus 201 -~L~~L~l~~n 210 (570)
T 2z63_A 201 -RLHKLTLRNN 210 (570)
T ss_dssp -EEEEEEEESC
T ss_pred -cceeEecccc
Confidence 4555555554
No 100
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.82 E-value=7.7e-21 Score=184.38 Aligned_cols=252 Identities=15% Similarity=0.127 Sum_probs=166.2
Q ss_pred echhhHHHHHhcccccceecccCcCcCCCCC----ch------hhhcCCccEEEcCCCCCCC--hHHHHHHhhcCCCCCE
Q 014792 119 VGKDKIQDKFSKFEELTSAALPYLGVSSPGA----NI------GTIVTNLKELDLTGNLLSD--WKDIGAFGEQLPALAV 186 (418)
Q Consensus 119 ~g~~~l~~~~~~l~~L~~L~L~~~~i~~~~~----~~------~~~~~~L~~L~Ls~n~l~~--~~~l~~~~~~l~~L~~ 186 (418)
.+...++..+..+++|+.|+|++|.+..+.. .+ ...+++|++|+|++|.+.. +..+|..+..+++|++
T Consensus 47 ~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~ 126 (386)
T 2ca6_A 47 EAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEH 126 (386)
T ss_dssp HHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCE
Confidence 3445566678889999999999976654322 22 1234899999999999886 3347888899999999
Q ss_pred EEcCCCCCCCccC-C----CCCC---------CCccEEEecCCCCCHHHHH---HHHhcCCcccEEEccCCCCCc-----
Q 014792 187 LNLSNNLMSKEVT-G----LPQL---------KSIRILVLNCTGVNWMQVE---ILKHSLPALEELHLMGNSISE----- 244 (418)
Q Consensus 187 L~Ls~n~l~~~~~-~----l~~l---------~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~----- 244 (418)
|+|++|.+....+ . +..+ ++|++|++++|.++...++ ..+..+++|++|++++|.++.
T Consensus 127 L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~ 206 (386)
T 2ca6_A 127 LYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206 (386)
T ss_dssp EECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH
T ss_pred EECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHH
Confidence 9999999864322 1 2233 8999999999998754555 455688999999999998873
Q ss_pred cCCCCCCccCCCCCccEEeCCCCCCCChh--hh-hhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccc--
Q 014792 245 ITPVSSPIVQGFDNLQLLNLEDNCIAEWS--EI-LKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESY-- 319 (418)
Q Consensus 245 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~l-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~-- 319 (418)
+.+ ..+..+++|++|+|++|.++... .+ ..+..+++|++|++++|.|++....... ..+
T Consensus 207 l~~---~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~-------------~~l~~ 270 (386)
T 2ca6_A 207 LLL---EGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV-------------DAFSK 270 (386)
T ss_dssp HHH---TTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH-------------HHHHT
T ss_pred HHH---HHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH-------------HHHhh
Confidence 122 13677899999999999985321 11 4577889999999999998875221110 012
Q ss_pred cCCCCCcEEEccCCCCCCC-CCccch-hhhhhhhhhhccCCCCCCcCCCcc-cccc-cCCCCCceEEcCCCC
Q 014792 320 LPFQNLCCLLLGNSKKLPT-SSHVSF-VVYFLIFAFSLHASGNNMIEDLAS-IDSL-DSFPKLMDIRLSENP 387 (418)
Q Consensus 320 ~~l~~L~~L~L~~n~~i~~-~~~~~~-l~~~~~~l~~l~~~~~n~i~~~~~-~~~l-~~~~~L~~L~l~~N~ 387 (418)
..+++|+.|+|++|..-.. ...++. +......|+.|+++ +|.+..... +..+ ..+++++.+++..+.
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~-~N~l~~~~~~~~~l~~~l~~~~~~~l~~~d 341 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELN-GNRFSEEDDVVDEIREVFSTRGRGELDELD 341 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECT-TSBSCTTSHHHHHHHHHHHHHTCCEECCCC
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEcc-CCcCCcchhHHHHHHHHhhhcCcchhhhcc
Confidence 3378888888887731110 000111 11122557778887 788866542 2233 235555555555543
No 101
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.81 E-value=3.5e-19 Score=176.29 Aligned_cols=238 Identities=18% Similarity=0.173 Sum_probs=117.4
Q ss_pred cccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEE
Q 014792 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILV 211 (418)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~ 211 (418)
++|+.|++++|.+..++. ..++|++|++++|.+.+ +| .++.+++|++|++++|++++.+.. ..+|++|+
T Consensus 111 ~~L~~L~l~~n~l~~l~~----~~~~L~~L~L~~n~l~~---lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~ 179 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSD----LPPLLEYLGVSNNQLEK---LP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIA 179 (454)
T ss_dssp TTCCEEECCSSCCSCCCS----CCTTCCEEECCSSCCSS---CC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEE
T ss_pred CCCcEEECCCCccCcccC----CCCCCCEEECcCCCCCC---Cc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEE
Confidence 445555555555544332 11455555555555553 22 245555555555555555443221 12455555
Q ss_pred ecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCC---------------CccCCCCCccEEeCCCCCCCChhhhh
Q 014792 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSS---------------PIVQGFDNLQLLNLEDNCIAEWSEIL 276 (418)
Q Consensus 212 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------------~~~~~l~~L~~L~L~~n~l~~~~~l~ 276 (418)
+++|.+.. ++. ++.+++|++|++++|.+++++.... +.++.+++|++|++++|.+.+++.
T Consensus 180 L~~n~l~~--l~~-~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~-- 254 (454)
T 1jl5_A 180 AGNNQLEE--LPE-LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD-- 254 (454)
T ss_dssp CCSSCCSS--CCC-CTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS--
T ss_pred CcCCcCCc--Ccc-ccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc--
Confidence 55555442 222 2444555555555555444332100 013344445555555554444321
Q ss_pred hcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCC-CCCcEEEccCCC--CCCCCCccchhhhhhhhhh
Q 014792 277 KLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPF-QNLCCLLLGNSK--KLPTSSHVSFVVYFLIFAF 353 (418)
Q Consensus 277 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~--~i~~~~~~~~l~~~~~~l~ 353 (418)
.+++|+.|++++|.++++ +.....++.++++.|...++..+ ++|+.|++++|. .++ .....|+
T Consensus 255 ---~~~~L~~L~l~~N~l~~l--~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~---------~~~~~L~ 320 (454)
T 1jl5_A 255 ---LPPSLEALNVRDNYLTDL--PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC---------DLPPSLE 320 (454)
T ss_dssp ---CCTTCCEEECCSSCCSCC--CCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEEC---------CCCTTCC
T ss_pred ---cccccCEEECCCCccccc--CcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCccc---------CCcCcCC
Confidence 124455555555554443 22233344444444444333222 345555555441 111 1123677
Q ss_pred hccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 354 SLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 354 ~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
.|+++ +|.+..+|. .+++|++|++++|.+...+. .+++|+.|+++.
T Consensus 321 ~L~Ls-~N~l~~lp~-----~~~~L~~L~L~~N~l~~lp~----------~l~~L~~L~L~~ 366 (454)
T 1jl5_A 321 ELNVS-NNKLIELPA-----LPPRLERLIASFNHLAEVPE----------LPQNLKQLHVEY 366 (454)
T ss_dssp EEECC-SSCCSCCCC-----CCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCS
T ss_pred EEECC-CCccccccc-----cCCcCCEEECCCCccccccc----------hhhhccEEECCC
Confidence 88887 688877763 25889999999999885331 257788887764
No 102
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=2.3e-19 Score=163.43 Aligned_cols=167 Identities=20% Similarity=0.212 Sum_probs=118.3
Q ss_pred hhhHHHHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-
Q 014792 121 KDKIQDKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT- 199 (418)
Q Consensus 121 ~~~l~~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~- 199 (418)
...+|..+. +.++.|+|++|.+....+.....+++|++|+|++|.+..+. +..+..+++|++|++++|+++..++
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~ 101 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS--AGVFDDLTELGTLGLANNQLASLPLG 101 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC--HhHhccCCcCCEEECCCCcccccChh
Confidence 345554443 58999999999999988743334599999999999999843 5668899999999999999997766
Q ss_pred CCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcC
Q 014792 200 GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLC 279 (418)
Q Consensus 200 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~ 279 (418)
.+..+++|++|++++|.++.. .+..+..+++|++|++++|.++.+++. .+..+++|++|+|++|.+.+.++ ..+.
T Consensus 102 ~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~-~~~~ 176 (251)
T 3m19_A 102 VFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQLQSIPAG---AFDKLTNLQTLSLSTNQLQSVPH-GAFD 176 (251)
T ss_dssp TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCT-TTTT
T ss_pred HhcccCCCCEEEcCCCcCCCc-ChhHhccCCcccEEECcCCcCCccCHH---HcCcCcCCCEEECCCCcCCccCH-HHHh
Confidence 356777777777777776631 222335566777777777776666543 35566667777777776666553 4456
Q ss_pred CCCCCCEEecCCCCCCc
Q 014792 280 QIRSLEQLYLNKNNLNR 296 (418)
Q Consensus 280 ~l~~L~~L~l~~n~l~~ 296 (418)
.+++|+.|++++|++..
T Consensus 177 ~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 177 RLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TCTTCCEEECCSCCBCT
T ss_pred CCCCCCEEEeeCCceeC
Confidence 66666677776666654
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1.6e-20 Score=191.57 Aligned_cols=151 Identities=30% Similarity=0.419 Sum_probs=89.9
Q ss_pred hcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCcc
Q 014792 129 SKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIR 208 (418)
Q Consensus 129 ~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~ 208 (418)
..+++|+.|++++|.+..++ .+.. +++|+.|+|++|.+..+.. +..+++|+.|+|++|.+... +.+..+++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~-l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~ 112 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQY-LPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENKIKDL-SSLKDLKKLK 112 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGG-CTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSCCCCC-TTSTTCTTCC
T ss_pred hcCCCCCEEECcCCCCCCCh-HHcc-CCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCCCCCC-hhhccCCCCC
Confidence 45566666666666666554 3433 3666666666666665331 56666666666666666543 3556666666
Q ss_pred EEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEe
Q 014792 209 ILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288 (418)
Q Consensus 209 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~ 288 (418)
+|+|++|.+.. ++. +..+++|+.|+|++|.++.+. .+..+++|+.|+|++|.+.+.++ +..+++|+.|+
T Consensus 113 ~L~Ls~N~l~~--l~~-l~~l~~L~~L~Ls~N~l~~l~-----~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~ 181 (605)
T 1m9s_A 113 SLSLEHNGISD--ING-LVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLY 181 (605)
T ss_dssp EEECTTSCCCC--CGG-GGGCTTCSEEECCSSCCCCCG-----GGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEE
T ss_pred EEEecCCCCCC--Ccc-ccCCCccCEEECCCCccCCch-----hhcccCCCCEEECcCCcCCCchh---hccCCCCCEEE
Confidence 66666666653 222 355666666666666666542 25556666666666666665543 55566666666
Q ss_pred cCCCCCCcc
Q 014792 289 LNKNNLNRI 297 (418)
Q Consensus 289 l~~n~l~~~ 297 (418)
|++|.|+++
T Consensus 182 Ls~N~i~~l 190 (605)
T 1m9s_A 182 LSKNHISDL 190 (605)
T ss_dssp CCSSCCCBC
T ss_pred CcCCCCCCC
Confidence 666666554
No 104
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=1.6e-19 Score=183.70 Aligned_cols=135 Identities=16% Similarity=0.123 Sum_probs=91.9
Q ss_pred hhHHHHHhcccccceecccCcCcCCCCC-chhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCC
Q 014792 122 DKIQDKFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG 200 (418)
Q Consensus 122 ~~l~~~~~~l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~ 200 (418)
..+|..+. ++|+.|++++|.+...++ .+.. +++|++|+|++|.++++ .|..+..+++|++|++++|+++..+..
T Consensus 44 ~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~lp~~ 118 (562)
T 3a79_B 44 THVPKDLP--PRTKALSLSQNSISELRMPDISF-LSELRVLRLSHNRIRSL--DFHVFLFNQDLEYLDVSHNRLQNISCC 118 (562)
T ss_dssp CSCCTTSC--TTCCEEECCSSCCCCCCGGGTTT-CTTCCEEECCSCCCCEE--CTTTTTTCTTCCEEECTTSCCCEECSC
T ss_pred ccCCCCCC--CCcCEEECCCCCccccChhhhcc-CCCccEEECCCCCCCcC--CHHHhCCCCCCCEEECCCCcCCccCcc
Confidence 34554332 677888888888877765 4444 47888888888877763 256677788888888888887755444
Q ss_pred CCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCc--cEEeCCCCCC
Q 014792 201 LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNL--QLLNLEDNCI 269 (418)
Q Consensus 201 l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L--~~L~L~~n~l 269 (418)
.+++|++|++++|.+.....+..++.+++|++|++++|.++... +..+++| +.|++++|.+
T Consensus 119 --~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~------~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 119 --PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD------LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp --CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT------TGGGTTSCEEEEEEEESSC
T ss_pred --ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc------hhhhhhceeeEEEeecccc
Confidence 67788888888887764333345577788888888887776532 3334444 8888887776
No 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.80 E-value=5.8e-21 Score=183.70 Aligned_cols=254 Identities=17% Similarity=0.163 Sum_probs=121.9
Q ss_pred HHHHHhcccccceecccCcCcCCCCC----chhhhcC-CccEEEcCCCCCCC--hHHHHHHhhcC-CCCCEEEcCCCCCC
Q 014792 124 IQDKFSKFEELTSAALPYLGVSSPGA----NIGTIVT-NLKELDLTGNLLSD--WKDIGAFGEQL-PALAVLNLSNNLMS 195 (418)
Q Consensus 124 l~~~~~~l~~L~~L~L~~~~i~~~~~----~~~~~~~-~L~~L~Ls~n~l~~--~~~l~~~~~~l-~~L~~L~Ls~n~l~ 195 (418)
+|..+...++|++|+|++|.+++.+. .....++ +|++|+|++|.+.+ +..+...+... ++|++|++++|.++
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 93 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS 93 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC
Confidence 44445555556666666666666554 2222224 66666666666664 22233333333 66666666666665
Q ss_pred CccCC-----CCCC-CCccEEEecCCCCCHHHHHHH---Hhc-CCcccEEEccCCCCCccCCC-CCCccCCCC-CccEEe
Q 014792 196 KEVTG-----LPQL-KSIRILVLNCTGVNWMQVEIL---KHS-LPALEELHLMGNSISEITPV-SSPIVQGFD-NLQLLN 263 (418)
Q Consensus 196 ~~~~~-----l~~l-~~L~~L~L~~n~l~~~~~~~~---~~~-l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~-~L~~L~ 263 (418)
...+. +..+ ++|++|++++|.++......+ +.. .++|++|++++|.+++.... ....+..++ +|++|+
T Consensus 94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 173 (362)
T 3goz_A 94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLN 173 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEee
Confidence 44332 2233 566666666666554322222 222 24666666666666532211 000122333 666666
Q ss_pred CCCCCCCChhhh---hhcCCC-CCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccC-CCCCcEEEccCCCCCCC
Q 014792 264 LEDNCIAEWSEI---LKLCQI-RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLP-FQNLCCLLLGNSKKLPT 338 (418)
Q Consensus 264 L~~n~l~~~~~l---~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~~L~L~~n~~i~~ 338 (418)
|++|.+++.... ..+..+ ++|++|++++|.|++....... ..+.. .++|+.|+|++|..-..
T Consensus 174 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~-------------~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 174 LRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA-------------YIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp CTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH-------------HHHHHSCTTCCEEECCSSCCCCC
T ss_pred ecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH-------------HHHhcCCCCceEEECcCCCCCcH
Confidence 666666544321 123344 3666666666666653111000 00122 23566666664411000
Q ss_pred C-CccchhhhhhhhhhhccCCCCCCcCCCcc------cccccCCCCCceEEcCCCCCCCC
Q 014792 339 S-SHVSFVVYFLIFAFSLHASGNNMIEDLAS------IDSLDSFPKLMDIRLSENPVSDP 391 (418)
Q Consensus 339 ~-~~~~~l~~~~~~l~~l~~~~~n~i~~~~~------~~~l~~~~~L~~L~l~~N~l~~~ 391 (418)
. ..+..+......|+.|+++ +|.+..+.. ...+..+++|+.|++++|++...
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~-~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLD-YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEE-HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEec-cCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 0 0011111111223444443 666444431 02456677788888888887643
No 106
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=4.5e-20 Score=166.89 Aligned_cols=203 Identities=13% Similarity=0.167 Sum_probs=162.9
Q ss_pred cCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCC-CCCccC-CCCCCCCccEEEecC-CCCCHH
Q 014792 144 VSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNL-MSKEVT-GLPQLKSIRILVLNC-TGVNWM 220 (418)
Q Consensus 144 i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~-l~~~~~-~l~~l~~L~~L~L~~-n~l~~~ 220 (418)
++.++. + .++|++|++++|.+..+. +..+..+++|++|++++|+ ++..++ .+..+++|++|++++ |.++..
T Consensus 23 l~~ip~-~---~~~l~~L~l~~n~l~~i~--~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 23 IQRIPS-L---PPSTQTLKLIETHLRTIP--SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp CSSCCC-C---CTTCCEEEEESCCCSEEC--TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccccCC-C---CCcccEEEEeCCcceEEC--HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 555554 2 368999999999999743 3478899999999999997 887766 588999999999998 888742
Q ss_pred HHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCcc---EEeCCCC-CCCChhhhhhcCCCCCCC-EEecCCCCCC
Q 014792 221 QVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQ---LLNLEDN-CIAEWSEILKLCQIRSLE-QLYLNKNNLN 295 (418)
Q Consensus 221 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~l~~l~~l~~L~-~L~l~~n~l~ 295 (418)
.+..+..+++|++|++++|.++.++. +..+++|+ +|++++| .+..++. ..+..+++|+ .|++++|.++
T Consensus 97 -~~~~f~~l~~L~~L~l~~n~l~~lp~-----~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 97 -DPDALKELPLLKFLGIFNTGLKMFPD-----LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp -CTTSEECCTTCCEEEEEEECCCSCCC-----CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCCCC
T ss_pred -CHHHhCCCCCCCEEeCCCCCCccccc-----cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCCCc
Confidence 23445789999999999999988653 56677777 9999999 9988775 5688899999 9999999999
Q ss_pred cccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCC-cCCCcccccccC
Q 014792 296 RIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNM-IEDLASIDSLDS 374 (418)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~-i~~~~~~~~l~~ 374 (418)
.+.. .. +.. ++|+.|+++ +|. ++.++. ..+..
T Consensus 170 ~i~~-~~----------------~~~-~~L~~L~L~----------------------------~n~~l~~i~~-~~~~~ 202 (239)
T 2xwt_C 170 SVQG-YA----------------FNG-TKLDAVYLN----------------------------KNKYLTVIDK-DAFGG 202 (239)
T ss_dssp EECT-TT----------------TTT-CEEEEEECT----------------------------TCTTCCEECT-TTTTT
T ss_pred ccCH-hh----------------cCC-CCCCEEEcC----------------------------CCCCcccCCH-HHhhc
Confidence 7732 21 333 789999999 884 888764 46788
Q ss_pred C-CCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 375 F-PKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 375 ~-~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
+ ++|++|++++|++...+.. .+++|+.|+++.
T Consensus 203 l~~~L~~L~l~~N~l~~l~~~---------~~~~L~~L~l~~ 235 (239)
T 2xwt_C 203 VYSGPSLLDVSQTSVTALPSK---------GLEHLKELIARN 235 (239)
T ss_dssp CSBCCSEEECTTCCCCCCCCT---------TCTTCSEEECTT
T ss_pred cccCCcEEECCCCccccCChh---------HhccCceeeccC
Confidence 8 9999999999999864411 478888888764
No 107
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=7.5e-19 Score=177.01 Aligned_cols=207 Identities=17% Similarity=0.224 Sum_probs=135.8
Q ss_pred ccccceecccCcCcCC-CCCch-----hhhcCCccEEEcCCCCCCChH--HHHHH---------------------hhcC
Q 014792 131 FEELTSAALPYLGVSS-PGANI-----GTIVTNLKELDLTGNLLSDWK--DIGAF---------------------GEQL 181 (418)
Q Consensus 131 l~~L~~L~L~~~~i~~-~~~~~-----~~~~~~L~~L~Ls~n~l~~~~--~l~~~---------------------~~~l 181 (418)
+++|++|++++|.+.+ ++..+ .. +++|+.+++++|.+ .++ .+... ...+
T Consensus 246 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~~-l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l 323 (520)
T 2z7x_B 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTS-LKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI 323 (520)
T ss_dssp TSSCSEEEEEEEEEESCCCCCCCCCCSCC-CCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSC
T ss_pred hCcccEEEeecccccCccccchhhccccc-CceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccchhhC
Confidence 3477788888887773 33344 33 36666666666665 221 11111 1456
Q ss_pred CCCCEEEcCCCCCCCccC-CCCCCCCccEEEecCCCCCHH-HHHHHHhcCCcccEEEccCCCCCc-cCCCCCCccCCCCC
Q 014792 182 PALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWM-QVEILKHSLPALEELHLMGNSISE-ITPVSSPIVQGFDN 258 (418)
Q Consensus 182 ~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~l~~ 258 (418)
++|++|++++|++++..+ .+..+++|++|++++|.+... .++..+..+++|++|++++|.+.+ ++.. .+..+++
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~---~~~~l~~ 400 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG---DCSWTKS 400 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGC---SCCCCTT
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccc---hhccCcc
Confidence 777777777777776443 566777777777777777642 234555677777777777777766 4432 3556677
Q ss_pred ccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCC
Q 014792 259 LQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPT 338 (418)
Q Consensus 259 L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~ 338 (418)
|+.|++++|.+++..+ ..+. ++|+.|++++|+|+.+ |.. +..+++|+.|+++
T Consensus 401 L~~L~Ls~N~l~~~~~-~~l~--~~L~~L~Ls~N~l~~i--p~~----------------~~~l~~L~~L~L~------- 452 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIF-RCLP--PRIKVLDLHSNKIKSI--PKQ----------------VVKLEALQELNVA------- 452 (520)
T ss_dssp CCEEECCSSCCCGGGG-GSCC--TTCCEEECCSSCCCCC--CGG----------------GGGCTTCCEEECC-------
T ss_pred CCEEECcCCCCCcchh-hhhc--ccCCEEECCCCccccc--chh----------------hhcCCCCCEEECC-------
Confidence 7777777777765322 1221 5777777777777755 332 3467778888887
Q ss_pred CCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCC
Q 014792 339 SSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 392 (418)
Q Consensus 339 ~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~ 392 (418)
+|.++.+|. ..+..+++|++|++++|++.+++
T Consensus 453 ---------------------~N~l~~l~~-~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 453 ---------------------SNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp ---------------------SSCCCCCCT-TTTTTCTTCCEEECCSSCBCCCH
T ss_pred ---------------------CCcCCccCH-HHhccCCcccEEECcCCCCcccC
Confidence 999999885 24889999999999999999765
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=1.2e-20 Score=177.46 Aligned_cols=201 Identities=19% Similarity=0.132 Sum_probs=117.9
Q ss_pred CCccEEEcCCCCCCChHHHHHHh--hcCCCCCEEEcCCCCCCCccC-----CCCCCCCccEEEecCCCCCHHHHHHHHhc
Q 014792 156 TNLKELDLTGNLLSDWKDIGAFG--EQLPALAVLNLSNNLMSKEVT-----GLPQLKSIRILVLNCTGVNWMQVEILKHS 228 (418)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~l~~~~--~~l~~L~~L~Ls~n~l~~~~~-----~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 228 (418)
++|++|+|++|.+.+ ..|..+ ..+++|++|++++|++.+..+ .+..+++|++|++++|.+.. ..+..+..
T Consensus 91 ~~L~~L~l~~n~l~~--~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~ 167 (310)
T 4glp_A 91 SRLKELTLEDLKITG--TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPA-FSCEQVRA 167 (310)
T ss_dssp SCCCEEEEESCCCBS--CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCC-CCTTSCCC
T ss_pred CceeEEEeeCCEecc--chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcch-hhHHHhcc
Confidence 556666666666654 234444 556666666666666654322 12345666666666666643 22233355
Q ss_pred CCcccEEEccCCCCCc---cCCCCCCccCCCCCccEEeCCCCCCCChhhh-h-hcCCCCCCCEEecCCCCCCcccCCCCC
Q 014792 229 LPALEELHLMGNSISE---ITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI-L-KLCQIRSLEQLYLNKNNLNRIYYPNND 303 (418)
Q Consensus 229 l~~L~~L~L~~n~l~~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l-~-~l~~l~~L~~L~l~~n~l~~~~~~~~~ 303 (418)
+++|++|++++|.+.+ ++.. ..++.+++|++|+|++|.++..+.. . .+..+++|++|++++|.+++..++..
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~- 244 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAA--LCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA- 244 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTT--SCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC-
T ss_pred CCCCCEEECCCCCCccchhhhHH--HhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH-
Confidence 6666666666666543 2111 0134556666666666666654432 1 13455666666666666666533221
Q ss_pred chhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEc
Q 014792 304 TIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRL 383 (418)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l 383 (418)
..+..+++|+.|+|+ +|.++.+|. .+ .++|++|+|
T Consensus 245 -------------~~~~~~~~L~~L~Ls----------------------------~N~l~~lp~--~~--~~~L~~L~L 279 (310)
T 4glp_A 245 -------------PRCMWSSALNSLNLS----------------------------FAGLEQVPK--GL--PAKLRVLDL 279 (310)
T ss_dssp -------------SSCCCCTTCCCEECC----------------------------SSCCCSCCS--CC--CSCCSCEEC
T ss_pred -------------HhccCcCcCCEEECC----------------------------CCCCCchhh--hh--cCCCCEEEC
Confidence 001223566666666 999998874 34 389999999
Q ss_pred CCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 384 SENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 384 ~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
++|.+...+ . .+.+++|+.|+++.
T Consensus 280 s~N~l~~~~-----~---~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 280 SSNRLNRAP-----Q---PDELPEVDNLTLDG 303 (310)
T ss_dssp CSCCCCSCC-----C---TTSCCCCSCEECSS
T ss_pred CCCcCCCCc-----h---hhhCCCccEEECcC
Confidence 999998532 1 35679999998864
No 109
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.80 E-value=2.7e-20 Score=184.54 Aligned_cols=277 Identities=17% Similarity=0.099 Sum_probs=183.3
Q ss_pred hhHHHHHhcccccceecccCcCcCCCCC-chhhhcC----CccEEEcCCCCCCCh--HHHHHHhhcCCCCCEEEcCCCCC
Q 014792 122 DKIQDKFSKFEELTSAALPYLGVSSPGA-NIGTIVT----NLKELDLTGNLLSDW--KDIGAFGEQLPALAVLNLSNNLM 194 (418)
Q Consensus 122 ~~l~~~~~~l~~L~~L~L~~~~i~~~~~-~~~~~~~----~L~~L~Ls~n~l~~~--~~l~~~~~~l~~L~~L~Ls~n~l 194 (418)
..++..+..+++|++|++++|.+.+.+. .+...++ +|++|+|++|.+.+. ..++..+..+++|++|++++|.+
T Consensus 46 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 125 (461)
T 1z7x_W 46 KDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125 (461)
T ss_dssp HHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred HHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence 4677888888999999999988876433 3444334 699999999988853 36788888999999999999987
Q ss_pred CCccC-C-----CCCCCCccEEEecCCCCCHHH---HHHHHhcCCcccEEEccCCCCCccCCC-CCCcc-CCCCCccEEe
Q 014792 195 SKEVT-G-----LPQLKSIRILVLNCTGVNWMQ---VEILKHSLPALEELHLMGNSISEITPV-SSPIV-QGFDNLQLLN 263 (418)
Q Consensus 195 ~~~~~-~-----l~~l~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~-~~l~~L~~L~ 263 (418)
..... . ....++|++|++++|.++... ++..+..+++|++|++++|.+...... +...+ ...++|++|+
T Consensus 126 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~ 205 (461)
T 1z7x_W 126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEE
Confidence 64322 1 223567999999999887533 455567788999999999987654321 00001 1246899999
Q ss_pred CCCCCCCChhh--h-hhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCC
Q 014792 264 LEDNCIAEWSE--I-LKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSS 340 (418)
Q Consensus 264 L~~n~l~~~~~--l-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~ 340 (418)
+++|.+..... + ..+..+++|++|++++|.+++......... ....+++|+.|++++|. +....
T Consensus 206 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~------------~~~~~~~L~~L~L~~n~-l~~~~ 272 (461)
T 1z7x_W 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPG------------LLHPSSRLRTLWIWECG-ITAKG 272 (461)
T ss_dssp CTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH------------HTSTTCCCCEEECTTSC-CCHHH
T ss_pred ccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHH------------HhcCCCCceEEECcCCC-CCHHH
Confidence 99998887431 1 346678899999999998876521111000 02357788888888772 21110
Q ss_pred --ccchhhhhhhhhhhccCCCCCCcCCCcccccc----c-CCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecC
Q 014792 341 --HVSFVVYFLIFAFSLHASGNNMIEDLASIDSL----D-SFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNG 413 (418)
Q Consensus 341 --~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l----~-~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~ 413 (418)
.++....-...|+.|+++ +|.+++... ..+ . ..++|++|++++|.++... .......++.+++|+.||+
T Consensus 273 ~~~l~~~l~~~~~L~~L~Ls-~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~l~~~~--~~~l~~~l~~~~~L~~L~L 348 (461)
T 1z7x_W 273 CGDLCRVLRAKESLKELSLA-GNELGDEGA-RLLCETLLEPGCQLESLWVKSCSFTAAC--CSHFSSVLAQNRFLLELQI 348 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECT-TCCCHHHHH-HHHHHHHTSTTCCCCEEECTTSCCBGGG--HHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHHhhCCCcceEECC-CCCCchHHH-HHHHHHhccCCccceeeEcCCCCCchHH--HHHHHHHHhhCCCccEEEc
Confidence 011111113457788887 777754321 122 2 3479999999999988532 1223445778899999998
Q ss_pred cc
Q 014792 414 SE 415 (418)
Q Consensus 414 s~ 415 (418)
+.
T Consensus 349 s~ 350 (461)
T 1z7x_W 349 SN 350 (461)
T ss_dssp CS
T ss_pred cC
Confidence 75
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=2.3e-18 Score=173.97 Aligned_cols=186 Identities=22% Similarity=0.258 Sum_probs=150.5
Q ss_pred cccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEE
Q 014792 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILV 211 (418)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~ 211 (418)
.+|+.|+|++|.+++++..+ +++|++|+|++|.+.. +| ..+++|++|++++|++++.+. +.. +|++|+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~---ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL---PPQITVLEITQNALIS---LP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSC---CC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEE
T ss_pred CCccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcc---cc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEE
Confidence 48999999999999977655 3899999999999996 45 568999999999999998655 554 999999
Q ss_pred ecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCC
Q 014792 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNK 291 (418)
Q Consensus 212 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~ 291 (418)
+++|.++. ++. .+++|+.|++++|.++.++. .+++|+.|+|++|.+++++. +. ++|+.|++++
T Consensus 127 Ls~N~l~~--lp~---~l~~L~~L~Ls~N~l~~lp~-------~l~~L~~L~Ls~N~L~~lp~---l~--~~L~~L~Ls~ 189 (571)
T 3cvr_A 127 VDNNQLTM--LPE---LPALLEYINADNNQLTMLPE-------LPTSLEVLSVRNNQLTFLPE---LP--ESLEALDVST 189 (571)
T ss_dssp CCSSCCSC--CCC---CCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSCCCC---CC--TTCCEEECCS
T ss_pred CCCCcCCC--CCC---cCccccEEeCCCCccCcCCC-------cCCCcCEEECCCCCCCCcch---hh--CCCCEEECcC
Confidence 99999885 443 68899999999999998653 46899999999999999764 44 8999999999
Q ss_pred CCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCccccc
Q 014792 292 NNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDS 371 (418)
Q Consensus 292 n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~ 371 (418)
|.|+.+ |.....+ ....+.|+.|+|+ +|.|+.+| ..
T Consensus 190 N~L~~l--p~~~~~L------------~~~~~~L~~L~Ls----------------------------~N~l~~lp--~~ 225 (571)
T 3cvr_A 190 NLLESL--PAVPVRN------------HHSEETEIFFRCR----------------------------ENRITHIP--EN 225 (571)
T ss_dssp SCCSSC--CCCC--------------------CCEEEECC----------------------------SSCCCCCC--GG
T ss_pred CCCCch--hhHHHhh------------hcccccceEEecC----------------------------CCcceecC--HH
Confidence 999977 3321000 1223344999999 99999998 46
Q ss_pred ccCCCCCceEEcCCCCCCC
Q 014792 372 LDSFPKLMDIRLSENPVSD 390 (418)
Q Consensus 372 l~~~~~L~~L~l~~N~l~~ 390 (418)
+..+++|+.|+|++|++.+
T Consensus 226 l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 226 ILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp GGGSCTTEEEECCSSSCCH
T ss_pred HhcCCCCCEEEeeCCcCCC
Confidence 7779999999999999984
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.6e-18 Score=161.40 Aligned_cols=166 Identities=30% Similarity=0.390 Sum_probs=144.5
Q ss_pred hcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCcc
Q 014792 129 SKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIR 208 (418)
Q Consensus 129 ~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~ 208 (418)
..+++|+.|++++|.+..++ .+.. +++|++|+|++|.+.++. . +..+++|++|++++|+++.. +.+..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~-l~~L~~L~L~~n~l~~~~---~-l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQY-LPNVTKLFLNGNKLTDIK---P-LANLKNLGWLFLDENKVKDL-SSLKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGG-CTTCCEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCCCCG-GGGTTCTTCC
T ss_pred hhcCcccEEEccCCCcccCh-hHhc-CCCCCEEEccCCccCCCc---c-cccCCCCCEEECCCCcCCCC-hhhccCCCCC
Confidence 46788999999999998875 4555 499999999999999854 2 78999999999999999874 4588999999
Q ss_pred EEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEe
Q 014792 209 ILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLY 288 (418)
Q Consensus 209 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~ 288 (418)
+|++++|.+.. ++ .+..+++|++|++++|.++.+. .+..+++|+.|++++|.+.+.++ +..+++|+.|+
T Consensus 116 ~L~L~~n~i~~--~~-~l~~l~~L~~L~l~~n~l~~~~-----~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~ 184 (291)
T 1h6t_A 116 SLSLEHNGISD--IN-GLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLY 184 (291)
T ss_dssp EEECTTSCCCC--CG-GGGGCTTCCEEECCSSCCCCCG-----GGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEE
T ss_pred EEECCCCcCCC--Ch-hhcCCCCCCEEEccCCcCCcch-----hhccCCCCCEEEccCCccccchh---hcCCCccCEEE
Confidence 99999999985 33 3578999999999999998873 47889999999999999999764 88899999999
Q ss_pred cCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEcc
Q 014792 289 LNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLG 331 (418)
Q Consensus 289 l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 331 (418)
+++|.++++ +. +..+++|+.|+++
T Consensus 185 L~~N~i~~l--~~-----------------l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 185 LSKNHISDL--RA-----------------LAGLKNLDVLELF 208 (291)
T ss_dssp CCSSCCCBC--GG-----------------GTTCTTCSEEEEE
T ss_pred CCCCcCCCC--hh-----------------hccCCCCCEEECc
Confidence 999999987 22 5778999999999
No 112
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.78 E-value=1e-19 Score=180.40 Aligned_cols=243 Identities=17% Similarity=0.126 Sum_probs=123.3
Q ss_pred ccccceecccCcCcCCCCC----chhhhcCCccEEEcCCCCCCCh--HHHHHHhh-cCCCCCEEEcCCCCCCCc-----c
Q 014792 131 FEELTSAALPYLGVSSPGA----NIGTIVTNLKELDLTGNLLSDW--KDIGAFGE-QLPALAVLNLSNNLMSKE-----V 198 (418)
Q Consensus 131 l~~L~~L~L~~~~i~~~~~----~~~~~~~~L~~L~Ls~n~l~~~--~~l~~~~~-~l~~L~~L~Ls~n~l~~~-----~ 198 (418)
.++|++|++++|.++.... .....+++|++|+|++|.+.+. ..+...+. .+++|++|++++|.++.. +
T Consensus 141 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 220 (461)
T 1z7x_W 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred CCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH
Confidence 3456777777776665432 1112236677777776666542 11222221 245666777766666542 1
Q ss_pred CCCCCCCCccEEEecCCCCCHHHHHHHH----hcCCcccEEEccCCCCCccCCC-CCCccCCCCCccEEeCCCCCCCChh
Q 014792 199 TGLPQLKSIRILVLNCTGVNWMQVEILK----HSLPALEELHLMGNSISEITPV-SSPIVQGFDNLQLLNLEDNCIAEWS 273 (418)
Q Consensus 199 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~ 273 (418)
..+..+++|++|++++|.+....+..+. ..+++|++|++++|.++..... ++..+..+++|++|++++|.+.+..
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence 2344556666666666666543332221 2356666666666666552100 0012444566666666666665432
Q ss_pred hh---hhcC-CCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCc--c-chhh
Q 014792 274 EI---LKLC-QIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSH--V-SFVV 346 (418)
Q Consensus 274 ~l---~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~--~-~~l~ 346 (418)
.. ..+. ..++|++|++++|.+++...... ...+..+++|+.|++++|. +..... + ..+.
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l-------------~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~ 366 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHF-------------SSVLAQNRFLLELQISNNR-LEDAGVRELCQGLG 366 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH-------------HHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCccceeeEcCCCCCchHHHHHH-------------HHHHhhCCCccEEEccCCc-cccccHHHHHHHHc
Confidence 20 1111 22466666666666655421110 0113345666666666552 110000 0 0000
Q ss_pred hhhhhhhhccCCCCCCcC-----CCcccccccCCCCCceEEcCCCCCCC
Q 014792 347 YFLIFAFSLHASGNNMIE-----DLASIDSLDSFPKLMDIRLSENPVSD 390 (418)
Q Consensus 347 ~~~~~l~~l~~~~~n~i~-----~~~~~~~l~~~~~L~~L~l~~N~l~~ 390 (418)
.....|+.|+++ +|.++ .++ ..+..+++|++|++++|++.+
T Consensus 367 ~~~~~L~~L~L~-~n~i~~~~~~~l~--~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 367 QPGSVLRVLWLA-DCDVSDSSCSSLA--ATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp STTCCCCEEECT-TSCCCHHHHHHHH--HHHHHCCCCCEEECCSSSCCH
T ss_pred CCCCceEEEECC-CCCCChhhHHHHH--HHHHhCCCccEEECCCCCCCH
Confidence 002245555665 77776 344 356778899999999998873
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=3.7e-18 Score=174.23 Aligned_cols=216 Identities=22% Similarity=0.244 Sum_probs=169.3
Q ss_pred ccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEE
Q 014792 131 FEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRIL 210 (418)
Q Consensus 131 l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L 210 (418)
+..+..+.+..+.+.+.. ....+ ++|+.|++++|.+..++ .+..+++|+.|+|++|++.+.++ +..+++|+.|
T Consensus 20 l~~l~~l~l~~~~i~~~~-~~~~L-~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L 92 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAV-TQNEL-NSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWL 92 (605)
T ss_dssp HHHHHHHHTTCSCTTSEE-CHHHH-TTCCCCBCTTCCCCCCT----TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEE
T ss_pred HHHHHHHhccCCCccccc-chhcC-CCCCEEECcCCCCCCCh----HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEE
Confidence 334555667777666654 34454 99999999999998753 46889999999999999998765 8899999999
Q ss_pred EecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecC
Q 014792 211 VLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLN 290 (418)
Q Consensus 211 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~ 290 (418)
+|++|.+.. ++ .+..+++|++|+|++|.+..++ .+..+++|+.|+|++|.+.+++ .+..+++|+.|+|+
T Consensus 93 ~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~l~~l~-----~l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls 161 (605)
T 1m9s_A 93 FLDENKIKD--LS-SLKDLKKLKSLSLEHNGISDIN-----GLVHLPQLESLYLGNNKITDIT---VLSRLTKLDTLSLE 161 (605)
T ss_dssp ECCSSCCCC--CT-TSTTCTTCCEEECTTSCCCCCG-----GGGGCTTCSEEECCSSCCCCCG---GGGSCTTCSEEECC
T ss_pred ECcCCCCCC--Ch-hhccCCCCCEEEecCCCCCCCc-----cccCCCccCEEECCCCccCCch---hhcccCCCCEEECc
Confidence 999999884 34 3578999999999999998864 3778899999999999999863 57889999999999
Q ss_pred CCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccc
Q 014792 291 KNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASID 370 (418)
Q Consensus 291 ~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~ 370 (418)
+|.|+++.+ +..+++|+.|+|+ +|.+.+++
T Consensus 162 ~N~l~~~~~-------------------l~~l~~L~~L~Ls----------------------------~N~i~~l~--- 191 (605)
T 1m9s_A 162 DNQISDIVP-------------------LAGLTKLQNLYLS----------------------------KNHISDLR--- 191 (605)
T ss_dssp SSCCCCCGG-------------------GTTCTTCCEEECC----------------------------SSCCCBCG---
T ss_pred CCcCCCchh-------------------hccCCCCCEEECc----------------------------CCCCCCCh---
Confidence 999988732 4678999999999 99988875
Q ss_pred cccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcccC
Q 014792 371 SLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSEVN 417 (418)
Q Consensus 371 ~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~i~ 417 (418)
.+..+++|+.|+|++|++...+... ...+..++.|+.+++..++
T Consensus 192 ~l~~l~~L~~L~L~~N~l~~~p~~~---~~~l~~~~~l~~l~g~~~~ 235 (605)
T 1m9s_A 192 ALAGLKNLDVLELFSQECLNKPINH---QSNLVVPNTVKNTDGSLVT 235 (605)
T ss_dssp GGTTCTTCSEEECCSEEEECCCCCC---CSSCEEECCCBCSSSCBCC
T ss_pred HHccCCCCCEEEccCCcCcCCcccc---cccEEecccccccCCCCcC
Confidence 5888999999999999998654211 1112234555556665554
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=1.5e-19 Score=165.91 Aligned_cols=164 Identities=17% Similarity=0.197 Sum_probs=115.9
Q ss_pred cccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccE
Q 014792 130 KFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRI 209 (418)
Q Consensus 130 ~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~ 209 (418)
.+.++..++++++.+.++. .+..+ ++|++|++++|.+..++ .+..+++|++|++++|++++.++ +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l-~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKEL-SGVQNFNGDNSNIQSLA----GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHH-TTCSEEECTTSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc-chhhc-CcCcEEECcCCCcccch----HHhhCCCCCEEECCCCccCCChh-hccCCCCCE
Confidence 4566777888888888765 45554 88999999999888643 46788889999999888887665 777777777
Q ss_pred EEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEec
Q 014792 210 LVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYL 289 (418)
Q Consensus 210 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l 289 (418)
|++++|.++. ++.. .. ++|++|++++|.+++++ .+..+++|+.|+|++|.+++.+ .+..+++|+.|++
T Consensus 90 L~L~~N~l~~--l~~~-~~-~~L~~L~L~~N~l~~~~-----~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L 157 (263)
T 1xeu_A 90 LSVNRNRLKN--LNGI-PS-ACLSRLFLDNNELRDTD-----SLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDL 157 (263)
T ss_dssp EECCSSCCSC--CTTC-CC-SSCCEEECCSSCCSBSG-----GGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEEC
T ss_pred EECCCCccCC--cCcc-cc-CcccEEEccCCccCCCh-----hhcCcccccEEECCCCcCCCCh---HHccCCCCCEEEC
Confidence 7777777663 3332 22 67777777777776653 2566677777777777777654 3566677777777
Q ss_pred CCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEcc
Q 014792 290 NKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLG 331 (418)
Q Consensus 290 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 331 (418)
++|.++++ .. +..+++|+.|+++
T Consensus 158 ~~N~i~~~--~~-----------------l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 158 HGNEITNT--GG-----------------LTRLKKVNWIDLT 180 (263)
T ss_dssp TTSCCCBC--TT-----------------STTCCCCCEEEEE
T ss_pred CCCcCcch--HH-----------------hccCCCCCEEeCC
Confidence 77777666 22 4566777777777
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1e-17 Score=150.39 Aligned_cols=178 Identities=19% Similarity=0.255 Sum_probs=122.7
Q ss_pred CEEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeC
Q 014792 185 AVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNL 264 (418)
Q Consensus 185 ~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 264 (418)
+.++.+++.+...+..+. ++|++|++++|.++.. .+..+..+++|++|++++|.+..+++. .+..+++|++|+|
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l~~i~~~---~~~~l~~L~~L~L 95 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQLGALPVG---VFDSLTQLTVLDL 95 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEEC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCCCCcChh---hcccCCCcCEEEC
Confidence 344444444443333222 4455555555554431 223335677788888888888777654 4677888999999
Q ss_pred CCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccch
Q 014792 265 EDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSF 344 (418)
Q Consensus 265 ~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~ 344 (418)
++|.++.++. ..+..+++|+.|++++|.|+.+ |.. +..+++|+.|+|+
T Consensus 96 s~N~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~l--p~~----------------~~~l~~L~~L~L~------------- 143 (229)
T 3e6j_A 96 GTNQLTVLPS-AVFDRLVHLKELFMCCNKLTEL--PRG----------------IERLTHLTHLALD------------- 143 (229)
T ss_dssp CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCSC--CTT----------------GGGCTTCSEEECC-------------
T ss_pred CCCcCCccCh-hHhCcchhhCeEeccCCccccc--Ccc----------------cccCCCCCEEECC-------------
Confidence 9998888765 4577889999999999999876 443 6788999999999
Q ss_pred hhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcc-hhHHHHHHhhCCceeecCccc
Q 014792 345 VVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGG-ISRFAIIARLGKIKILNGSEV 416 (418)
Q Consensus 345 l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~-~~~~~~i~~l~~L~~Ln~s~i 416 (418)
+|.+..++. ..+..+++|+.|++++|++..++... ..+.....+.+.+..+++..|
T Consensus 144 ---------------~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~~v 200 (229)
T 3e6j_A 144 ---------------QNQLKSIPH-GAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGKAV 200 (229)
T ss_dssp ---------------SSCCCCCCT-TTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSSEE
T ss_pred ---------------CCcCCccCH-HHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCccc
Confidence 899988875 46888999999999999998776322 223334455677777777554
No 116
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=7.5e-19 Score=166.85 Aligned_cols=226 Identities=16% Similarity=0.129 Sum_probs=117.6
Q ss_pred ccEEEcCCCCCCChHHHHHHhhcC--CCCCEEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEE
Q 014792 158 LKELDLTGNLLSDWKDIGAFGEQL--PALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEEL 235 (418)
Q Consensus 158 L~~L~Ls~n~l~~~~~l~~~~~~l--~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 235 (418)
++.++++++.+. +..+..+ ++++.|++++|.+.+.++.+..+++|++|++++|.+....++..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~-----~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH-----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC-----HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC-----HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 455555555544 2233333 555666666665555555455555666666666555544455555555666666
Q ss_pred EccCCCCCccCCCCCCccCCCCCccEEeCCCC-CCCChhhhhhcCCCCCCCEEecCCC-CCCcccCCCCCchhhhhcccc
Q 014792 236 HLMGNSISEITPVSSPIVQGFDNLQLLNLEDN-CIAEWSEILKLCQIRSLEQLYLNKN-NLNRIYYPNNDTIHELVSAHE 313 (418)
Q Consensus 236 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~l~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~~ 313 (418)
++++|.+++..+. .+..+++|++|++++| .+++..-...+..+++|++|++++| .+++...+..
T Consensus 124 ~L~~~~l~~~~~~---~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~----------- 189 (336)
T 2ast_B 124 SLEGLRLSDPIVN---TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA----------- 189 (336)
T ss_dssp ECTTCBCCHHHHH---HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-----------
T ss_pred eCcCcccCHHHHH---HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-----------
Confidence 6666555432211 2444556666666665 3443111022444555666666665 5554211111
Q ss_pred ccCccccCCC-CCcEEEccCCC-CCCCCCccchhhhhhhhhhhccCCCCCC-cCCCcccccccCCCCCceEEcCCCCCCC
Q 014792 314 SHEESYLPFQ-NLCCLLLGNSK-KLPTSSHVSFVVYFLIFAFSLHASGNNM-IEDLASIDSLDSFPKLMDIRLSENPVSD 390 (418)
Q Consensus 314 ~~~~~~~~l~-~L~~L~L~~n~-~i~~~~~~~~l~~~~~~l~~l~~~~~n~-i~~~~~~~~l~~~~~L~~L~l~~N~l~~ 390 (418)
+..++ +|++|++++|. .+... .++....-..+|+.|+++ +|. +++. .+..+..+++|++|++++|.-..
T Consensus 190 -----~~~l~~~L~~L~l~~~~~~~~~~-~l~~~~~~~~~L~~L~l~-~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 190 -----VAHVSETITQLNLSGYRKNLQKS-DLSTLVRRCPNLVHLDLS-DSVMLKND-CFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp -----HHHSCTTCCEEECCSCGGGSCHH-HHHHHHHHCTTCSEEECT-TCTTCCGG-GGGGGGGCTTCCEEECTTCTTCC
T ss_pred -----HHhcccCCCEEEeCCCcccCCHH-HHHHHHhhCCCCCEEeCC-CCCcCCHH-HHHHHhCCCCCCEeeCCCCCCCC
Confidence 33445 55555555442 12110 011111112234555555 565 5433 22478889999999999996221
Q ss_pred CCCcchhHHHHHHhhCCceeecCcc
Q 014792 391 PGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 391 ~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
......++++++|+.|+++.
T Consensus 262 -----~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 262 -----PETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp -----GGGGGGGGGCTTCCEEECTT
T ss_pred -----HHHHHHHhcCCCCCEEeccC
Confidence 11123467899999999875
No 117
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.75 E-value=1.2e-19 Score=174.39 Aligned_cols=266 Identities=18% Similarity=0.131 Sum_probs=180.6
Q ss_pred eecccCcCcCCCCCchhhhcCCccEEEcCCCCCCCh--HHHHHHhhcCC-CCCEEEcCCCCCCCccC-CCCCC-----CC
Q 014792 136 SAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDW--KDIGAFGEQLP-ALAVLNLSNNLMSKEVT-GLPQL-----KS 206 (418)
Q Consensus 136 ~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~l~~~~~~l~-~L~~L~Ls~n~l~~~~~-~l~~l-----~~ 206 (418)
.+.++.+.+++..+.+....++|++|+|++|.+.+. ..+...+..++ +|++|++++|++....+ .+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 356788888877666666656799999999999874 33447888999 99999999999987644 34332 89
Q ss_pred ccEEEecCCCCCHHH---HHHHHhcC-CcccEEEccCCCCCccCCC-CCCccCC-CCCccEEeCCCCCCCChhh--h-hh
Q 014792 207 IRILVLNCTGVNWMQ---VEILKHSL-PALEELHLMGNSISEITPV-SSPIVQG-FDNLQLLNLEDNCIAEWSE--I-LK 277 (418)
Q Consensus 207 L~~L~L~~n~l~~~~---~~~~~~~l-~~L~~L~L~~n~l~~~~~~-~~~~~~~-l~~L~~L~L~~n~l~~~~~--l-~~ 277 (418)
|++|++++|.++... +...+..+ ++|++|++++|.++..... +...+.. .++|++|+|++|.+.+... + ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999987533 33334555 8999999999999876532 0011333 3699999999999985322 1 34
Q ss_pred cCCCC-CCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCC-CCCcEEEccCCCCCCCC-Cccc-hhhhhhhhhh
Q 014792 278 LCQIR-SLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPF-QNLCCLLLGNSKKLPTS-SHVS-FVVYFLIFAF 353 (418)
Q Consensus 278 l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~n~~i~~~-~~~~-~l~~~~~~l~ 353 (418)
+..++ +|++|++++|.+++..+.... ..+..+ ++|+.|+|++|..-... ..+. .+......|+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~-------------~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~ 228 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELA-------------KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVV 228 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHH-------------HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHH-------------HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCce
Confidence 45665 999999999999876432210 113455 59999999988411111 1111 1222234688
Q ss_pred hccCCCCCCcCCCcc---cccccCCCCCceEEcCCCCCCCCCCcch-hHHHHHHhhCCceeecCcc
Q 014792 354 SLHASGNNMIEDLAS---IDSLDSFPKLMDIRLSENPVSDPGRGGI-SRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 354 ~l~~~~~n~i~~~~~---~~~l~~~~~L~~L~l~~N~l~~~~~~~~-~~~~~i~~l~~L~~Ln~s~ 415 (418)
.|+++ +|.+++.+. ...+..+++|++|++++|.+........ .....+..+++|+.||++.
T Consensus 229 ~L~Ls-~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 229 SLNLC-LNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp EEECC-SSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred EEECc-CCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 99998 788887753 1235678999999999998654331111 1111244677888888864
No 118
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.74 E-value=4.7e-18 Score=174.85 Aligned_cols=168 Identities=20% Similarity=0.218 Sum_probs=129.0
Q ss_pred hHHHHHhcccc---cceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC
Q 014792 123 KIQDKFSKFEE---LTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT 199 (418)
Q Consensus 123 ~l~~~~~~l~~---L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~ 199 (418)
.+|+....+.. -...+.++.+++.+|..+ .+++++|||++|.|+.++ +..|..+++|++|+|++|+|+..++
T Consensus 19 ~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~l---p~~~~~LdLs~N~i~~l~--~~~f~~l~~L~~L~Ls~N~i~~i~~ 93 (635)
T 4g8a_A 19 SIPESWEPCVEVVPNITYQCMELNFYKIPDNL---PFSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQTIED 93 (635)
T ss_dssp ------CCSEEEETTTEEECTTSCCSSCCSSS---CTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCCccccCCCCEEECCCCCcCccCCCC---CcCCCEEEeeCCCCCCCC--HHHHhCCCCCCEEECCCCcCCCcCh
Confidence 34544443322 235677777888887655 368999999999998643 4678899999999999999998777
Q ss_pred -CCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhc
Q 014792 200 -GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKL 278 (418)
Q Consensus 200 -~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l 278 (418)
.+..+++|++|+|++|.++.. .+..+..+++|++|++++|.++.+++. .++.+++|++|+|++|.+........+
T Consensus 94 ~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L~Ls~N~l~~l~~~---~~~~L~~L~~L~Ls~N~l~~~~~~~~~ 169 (635)
T 4g8a_A 94 GAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENF---PIGHLKTLKELNVAHNLIQSFKLPEYF 169 (635)
T ss_dssp TTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEEECTTSCCCCSTTC---CCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred hHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEEECCCCcCCCCChh---hhhcCcccCeeccccCccccCCCchhh
Confidence 588899999999999988752 334568899999999999999988765 578899999999999998875422457
Q ss_pred CCCCCCCEEecCCCCCCcccC
Q 014792 279 CQIRSLEQLYLNKNNLNRIYY 299 (418)
Q Consensus 279 ~~l~~L~~L~l~~n~l~~~~~ 299 (418)
..+++|++|++++|+|+++.+
T Consensus 170 ~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 170 SNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp GGCTTCCEEECCSSCCCEECG
T ss_pred ccchhhhhhcccCcccccccc
Confidence 788999999999999988743
No 119
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=9.3e-18 Score=147.00 Aligned_cols=154 Identities=18% Similarity=0.288 Sum_probs=128.9
Q ss_pred hcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCc-cCCCCCCCCc
Q 014792 129 SKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKE-VTGLPQLKSI 207 (418)
Q Consensus 129 ~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~l~~l~~L 207 (418)
.++++|+.|++++|.+..++ .+..+ ++|++|++++|.+..+ ..+..+++|++|++++|+++.. ++.+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l-~~L~~L~l~~n~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYA-HNIKDLTINNIHATNY----NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGC-TTCSEEEEESCCCSCC----GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCccChH-HHhcC-CCCCEEEccCCCCCcc----hhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 56788999999999999776 56654 9999999999988864 3568899999999999999874 4478999999
Q ss_pred cEEEecCCCCCHHHHHHHHhcCCcccEEEccCCC-CCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCE
Q 014792 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNS-ISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (418)
Q Consensus 208 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~ 286 (418)
++|++++|.++.. .+..+..+++|++|++++|. +..++ .+..+++|++|++++|.+++++ .+..+++|++
T Consensus 115 ~~L~Ls~n~i~~~-~~~~l~~l~~L~~L~L~~n~~i~~~~-----~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~ 185 (197)
T 4ezg_A 115 TLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDIM-----PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQ 185 (197)
T ss_dssp CEEECCSSBCBGG-GHHHHTTCSSCCEEECCSCTBCCCCG-----GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCE
T ss_pred CEEEecCCccCcH-hHHHHhhCCCCCEEEccCCCCccccH-----hhcCCCCCCEEECCCCCCcChH---HhccCCCCCE
Confidence 9999999999863 34555899999999999998 77764 3788999999999999999865 4788899999
Q ss_pred EecCCCCCCcc
Q 014792 287 LYLNKNNLNRI 297 (418)
Q Consensus 287 L~l~~n~l~~~ 297 (418)
|++++|+|.+.
T Consensus 186 L~l~~N~i~~~ 196 (197)
T 4ezg_A 186 LYAFSQTIGGK 196 (197)
T ss_dssp EEECBC-----
T ss_pred EEeeCcccCCc
Confidence 99999998653
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=4.9e-18 Score=155.75 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=131.1
Q ss_pred HHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCC
Q 014792 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206 (418)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~ 206 (418)
.+..+++|+.|++++|.++.++ .+..+ ++|++|+|++|.+.++. . +..+++|++|++++|+++..++ +.. ++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l-~~L~~L~L~~N~i~~~~---~-l~~l~~L~~L~L~~N~l~~l~~-~~~-~~ 107 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFF-TNLKELHLSHNQISDLS---P-LKDLTKLEELSVNRNRLKNLNG-IPS-AC 107 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGC-TTCCEEECCSSCCCCCG---G-GTTCSSCCEEECCSSCCSCCTT-CCC-SS
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhC-CCCCEEECCCCccCCCh---h-hccCCCCCEEECCCCccCCcCc-ccc-Cc
Confidence 3568899999999999999876 56654 99999999999999854 3 7899999999999999987544 334 89
Q ss_pred ccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCE
Q 014792 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (418)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~ 286 (418)
|++|++++|.++. ++. +..+++|++|++++|.+++++ .+..+++|+.|+|++|.+.++ ..+..+++|+.
T Consensus 108 L~~L~L~~N~l~~--~~~-l~~l~~L~~L~Ls~N~i~~~~-----~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~ 176 (263)
T 1xeu_A 108 LSRLFLDNNELRD--TDS-LIHLKNLEILSIRNNKLKSIV-----MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNW 176 (263)
T ss_dssp CCEEECCSSCCSB--SGG-GTTCTTCCEEECTTSCCCBCG-----GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCE
T ss_pred ccEEEccCCccCC--Chh-hcCcccccEEECCCCcCCCCh-----HHccCCCCCEEECCCCcCcch---HHhccCCCCCE
Confidence 9999999999985 333 588999999999999999875 378899999999999999987 35888999999
Q ss_pred EecCCCCCCcc
Q 014792 287 LYLNKNNLNRI 297 (418)
Q Consensus 287 L~l~~n~l~~~ 297 (418)
|++++|.++..
T Consensus 177 L~l~~N~~~~~ 187 (263)
T 1xeu_A 177 IDLTGQKCVNE 187 (263)
T ss_dssp EEEEEEEEECC
T ss_pred EeCCCCcccCC
Confidence 99999998876
No 121
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.73 E-value=8e-19 Score=179.53 Aligned_cols=284 Identities=14% Similarity=0.074 Sum_probs=169.0
Q ss_pred hhHHHHHhcccccceecccCcCcCCCCC----chhhhcCCccEEEcCCCCCC--ChHHHHHHhhcCCCCCEEEcCCCCCC
Q 014792 122 DKIQDKFSKFEELTSAALPYLGVSSPGA----NIGTIVTNLKELDLTGNLLS--DWKDIGAFGEQLPALAVLNLSNNLMS 195 (418)
Q Consensus 122 ~~l~~~~~~l~~L~~L~L~~~~i~~~~~----~~~~~~~~L~~L~Ls~n~l~--~~~~l~~~~~~l~~L~~L~Ls~n~l~ 195 (418)
..++.....+++|++|+|++|.+.+.+. .+...+++|++|++++|.++ ....++..+..+++|++|++++|.+.
T Consensus 154 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~ 233 (592)
T 3ogk_B 154 DGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL 233 (592)
T ss_dssp HHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred HHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence 3455556788899999999998876643 23444688888999888887 33467777888888888888887653
Q ss_pred Ccc-------------------------------------------------C-CCCCCCCccEEEecCCCCCHHHHHHH
Q 014792 196 KEV-------------------------------------------------T-GLPQLKSIRILVLNCTGVNWMQVEIL 225 (418)
Q Consensus 196 ~~~-------------------------------------------------~-~l~~l~~L~~L~L~~n~l~~~~~~~~ 225 (418)
+.+ + .+..+++|++|++++|.++...+...
T Consensus 234 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~ 313 (592)
T 3ogk_B 234 ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTL 313 (592)
T ss_dssp GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHH
T ss_pred HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHH
Confidence 311 0 12235577778888777776666666
Q ss_pred HhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCC-----------CCCCChhhhhhcCCCCCCCEEecCCCCC
Q 014792 226 KHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLED-----------NCIAEWSEILKLCQIRSLEQLYLNKNNL 294 (418)
Q Consensus 226 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~-----------n~l~~~~~l~~l~~l~~L~~L~l~~n~l 294 (418)
+..+++|++|+++ +.+.+... ......+++|++|++++ |.++..........+++|++|+++.|.+
T Consensus 314 ~~~~~~L~~L~L~-~~~~~~~l--~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l 390 (592)
T 3ogk_B 314 IQKCPNLEVLETR-NVIGDRGL--EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI 390 (592)
T ss_dssp HTTCTTCCEEEEE-GGGHHHHH--HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCC
T ss_pred HHhCcCCCEEecc-CccCHHHH--HHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCc
Confidence 6777777777777 33322110 01124456777777773 4444322111233467777777776766
Q ss_pred CcccCCCC---Cchhhhhccc----cccCcc----------ccCCCCCcEEEccCCC-CCCCCCccchhhhhhhhhhhcc
Q 014792 295 NRIYYPNN---DTIHELVSAH----ESHEES----------YLPFQNLCCLLLGNSK-KLPTSSHVSFVVYFLIFAFSLH 356 (418)
Q Consensus 295 ~~~~~~~~---~~~~~~~~~~----~~~~~~----------~~~l~~L~~L~L~~n~-~i~~~~~~~~l~~~~~~l~~l~ 356 (418)
++...... ...++.+++. .+.... +..+++|+.|+++.|. .+... ....+.....+|+.|+
T Consensus 391 ~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~-~~~~~~~~~~~L~~L~ 469 (592)
T 3ogk_B 391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL-GLSYIGQYSPNVRWML 469 (592)
T ss_dssp CHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH-HHHHHHHSCTTCCEEE
T ss_pred cHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH-HHHHHHHhCccceEee
Confidence 65322111 1123333442 222222 3346777777776542 11111 1111112234577888
Q ss_pred CCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 357 ASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 357 ~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
++ +|.+++......+..+++|++|+|++|++++ ......+..+++|+.|+++.
T Consensus 470 L~-~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 470 LG-YVGESDEGLMEFSRGCPNLQKLEMRGCCFSE-----RAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp EC-SCCSSHHHHHHHHTCCTTCCEEEEESCCCBH-----HHHHHHHHHCSSCCEEEEES
T ss_pred cc-CCCCCHHHHHHHHhcCcccCeeeccCCCCcH-----HHHHHHHHhcCccCeeECcC
Confidence 87 6667553221245778999999999999752 22333456789999998765
No 122
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.4e-17 Score=145.80 Aligned_cols=150 Identities=18% Similarity=0.241 Sum_probs=101.9
Q ss_pred CCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEE
Q 014792 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEEL 235 (418)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 235 (418)
++|++|++++|.+..+ | .+..+++|++|++++|.+.. ++ .+..+++|++|
T Consensus 44 ~~L~~L~l~~n~i~~l---~-~l~~l~~L~~L~l~~n~~~~-------------------------~~-~l~~l~~L~~L 93 (197)
T 4ezg_A 44 NSLTYITLANINVTDL---T-GIEYAHNIKDLTINNIHATN-------------------------YN-PISGLSNLERL 93 (197)
T ss_dssp HTCCEEEEESSCCSCC---T-TGGGCTTCSEEEEESCCCSC-------------------------CG-GGTTCTTCCEE
T ss_pred CCccEEeccCCCccCh---H-HHhcCCCCCEEEccCCCCCc-------------------------ch-hhhcCCCCCEE
Confidence 5666666666665542 2 24555555555555554331 11 23556777777
Q ss_pred EccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCC-CCcccCCCCCchhhhhccccc
Q 014792 236 HLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNN-LNRIYYPNNDTIHELVSAHES 314 (418)
Q Consensus 236 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~ 314 (418)
++++|.++...+. .+..+++|++|++++|.+.+... ..+..+++|++|++++|. ++++ +.
T Consensus 94 ~l~~n~l~~~~~~---~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~--~~------------- 154 (197)
T 4ezg_A 94 RIMGKDVTSDKIP---NLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDI--MP------------- 154 (197)
T ss_dssp EEECTTCBGGGSC---CCTTCTTCCEEECCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCC--GG-------------
T ss_pred EeECCccCcccCh---hhcCCCCCCEEEecCCccCcHhH-HHHhhCCCCCEEEccCCCCcccc--Hh-------------
Confidence 7777777663332 36778888888888888887443 567788889999999887 7766 22
Q ss_pred cCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCC
Q 014792 315 HEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVS 389 (418)
Q Consensus 315 ~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~ 389 (418)
+..+++|+.|+++ +|.+.+++ .+..+++|++|++++|++.
T Consensus 155 ----l~~l~~L~~L~l~----------------------------~n~i~~~~---~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 155 ----LKTLPELKSLNIQ----------------------------FDGVHDYR---GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp ----GGGCSSCCEEECT----------------------------TBCCCCCT---TGGGCSSCCEEEECBC---
T ss_pred ----hcCCCCCCEEECC----------------------------CCCCcChH---HhccCCCCCEEEeeCcccC
Confidence 5778889999998 88888876 5778888999999999876
No 123
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.72 E-value=9.7e-18 Score=160.36 Aligned_cols=219 Identities=16% Similarity=0.124 Sum_probs=113.6
Q ss_pred cccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHH-HHhhcCCCCCE-EEcCCCCCCCccC-CCCCCCCcc
Q 014792 132 EELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIG-AFGEQLPALAV-LNLSNNLMSKEVT-GLPQLKSIR 208 (418)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~-~~~~~l~~L~~-L~Ls~n~l~~~~~-~l~~l~~L~ 208 (418)
+++++|+|++|+|+.+++.....+++|++|+|++|.+.+ .+| ..+.++++|.+ +.++.|++...++ .+..+++|+
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~--~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE--VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC--EECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC--ccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 355666666666665554322223666666666665543 111 23455555443 4444555555544 355566666
Q ss_pred EEEecCCCCCHHHHHHHHhcCCcccEEEccC-CCCCccCCCCCCccCCC-CCccEEeCCCCCCCChhhhhhcCCCCCCCE
Q 014792 209 ILVLNCTGVNWMQVEILKHSLPALEELHLMG-NSISEITPVSSPIVQGF-DNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (418)
Q Consensus 209 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~ 286 (418)
+|++++|.+.... +..+....++..|++.+ +.+..++.. .+..+ ..++.|+|++|.|+.++. .....++|++
T Consensus 108 ~L~l~~n~l~~~~-~~~~~~~~~l~~l~l~~~~~i~~l~~~---~f~~~~~~l~~L~L~~N~i~~i~~--~~f~~~~L~~ 181 (350)
T 4ay9_X 108 YLLISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERN---SFVGLSFESVILWLNKNGIQEIHN--SAFNGTQLDE 181 (350)
T ss_dssp EEEEEEECCSSCC-CCTTCCBSSCEEEEEESCTTCCEECTT---SSTTSBSSCEEEECCSSCCCEECT--TSSTTEEEEE
T ss_pred cccccccccccCC-chhhcccchhhhhhhcccccccccccc---chhhcchhhhhhccccccccCCCh--hhccccchhH
Confidence 6666666554211 11112223445555543 344444432 22222 345566666666655442 2333445666
Q ss_pred EecCC-CCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCC
Q 014792 287 LYLNK-NNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIED 365 (418)
Q Consensus 287 L~l~~-n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~ 365 (418)
|++++ |.++.+.. . .+..+++|+.|+|+ +|.|+.
T Consensus 182 l~l~~~n~l~~i~~-~----------------~f~~l~~L~~LdLs----------------------------~N~l~~ 216 (350)
T 4ay9_X 182 LNLSDNNNLEELPN-D----------------VFHGASGPVILDIS----------------------------RTRIHS 216 (350)
T ss_dssp EECTTCTTCCCCCT-T----------------TTTTEECCSEEECT----------------------------TSCCCC
T ss_pred HhhccCCcccCCCH-H----------------HhccCcccchhhcC----------------------------CCCcCc
Confidence 66653 44555421 1 14566777777777 889988
Q ss_pred CcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCc
Q 014792 366 LASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGS 414 (418)
Q Consensus 366 ~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 414 (418)
+|. ..+.+|+.|++.++.-.... + .+..+++|+.++++
T Consensus 217 lp~----~~~~~L~~L~~l~~~~l~~l----P---~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 217 LPS----YGLENLKKLRARSTYNLKKL----P---TLEKLVALMEASLT 254 (350)
T ss_dssp CCS----SSCTTCCEEECTTCTTCCCC----C---CTTTCCSCCEEECS
T ss_pred cCh----hhhccchHhhhccCCCcCcC----C---CchhCcChhhCcCC
Confidence 874 23556667766665433221 1 14568888888775
No 124
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=4.2e-17 Score=145.46 Aligned_cols=155 Identities=20% Similarity=0.284 Sum_probs=110.6
Q ss_pred EEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCC
Q 014792 186 VLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLE 265 (418)
Q Consensus 186 ~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~ 265 (418)
.+++++|.++..+..+. ..+++|++++|.++.......+..+++|++|++++|.++.+++. .+..+++|++|+|+
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~---~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG---AFEGASGVNEILLT 89 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTT---TTTTCTTCCEEECC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHH---HhCCCCCCCEEECC
Confidence 45555555544333322 23355555555554321122346778888888888888877654 47788889999999
Q ss_pred CCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchh
Q 014792 266 DNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFV 345 (418)
Q Consensus 266 ~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l 345 (418)
+|.++..++ ..+..+++|++|++++|.|+.+.+.. +..+++|+.|+|+
T Consensus 90 ~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-----------------~~~l~~L~~L~L~-------------- 137 (220)
T 2v70_A 90 SNRLENVQH-KMFKGLESLKTLMLRSNRITCVGNDS-----------------FIGLSSVRLLSLY-------------- 137 (220)
T ss_dssp SSCCCCCCG-GGGTTCSSCCEEECTTSCCCCBCTTS-----------------STTCTTCSEEECT--------------
T ss_pred CCccCccCH-hHhcCCcCCCEEECCCCcCCeECHhH-----------------cCCCccCCEEECC--------------
Confidence 998888765 56788889999999999988874333 5778899999999
Q ss_pred hhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCC
Q 014792 346 VYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPG 392 (418)
Q Consensus 346 ~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~ 392 (418)
+|.+..++. ..+..+++|+.|+|++|++..++
T Consensus 138 --------------~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 138 --------------DNQITTVAP-GAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp --------------TSCCCCBCT-TTTTTCTTCCEEECCSCCEECSG
T ss_pred --------------CCcCCEECH-HHhcCCCCCCEEEecCcCCcCCC
Confidence 888888743 47888899999999999998765
No 125
>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=99.71 E-value=2.1e-17 Score=120.19 Aligned_cols=71 Identities=25% Similarity=0.404 Sum_probs=60.8
Q ss_pred CCCCCCCEEEeCCCC-ceeeEEEEEeecCCC--CceEEEEEEeCCCCCCCCEECCEEee-ecCCCCcccccccccc
Q 014792 7 ESYKLGQRVHSANDA-RRIGTVKYVGEVQGY--SGTWLGVDWDYGNGKHDGSINGVRYF-QAKSQKSGSFVRVHNL 78 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~-~~~gtvr~~g~~~~~--~~~w~gve~d~~~gk~~g~~~g~~yf-~~~~~~~~sf~~~~~l 78 (418)
+.++||+|+++.... .+.|||||+|++++. .+.|+|||+|+|.||+||+++|+||| .|. +++|.|+.+..+
T Consensus 8 ~~i~VG~Rc~V~~~~~~rrGtVrfvG~~~~~~~~G~wVGVelDEP~GknDGsv~G~ryF~~c~-~~~g~fV~~~d~ 82 (92)
T 1whm_A 8 PPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGNWDGRFDGVQLCSFAC-VESTILLHINDI 82 (92)
T ss_dssp CSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCCCCSEETTEESCSSCC-TTTEEEEEGGGE
T ss_pred cCccccCeEEEcCCCceeeEEEEEEecCCCcCCCCeEEEEEcCCCCCCCCCeECCEEeccccC-CCcceEcccccC
Confidence 468999998885332 467999999999863 59999999999999999999999999 555 599999988765
No 126
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=7e-17 Score=143.98 Aligned_cols=136 Identities=24% Similarity=0.304 Sum_probs=86.6
Q ss_pred CccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCC
Q 014792 206 SIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLE 285 (418)
Q Consensus 206 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~ 285 (418)
++++|++++|.++.. .+..+..+++|++|++++|.++.+.+. .+..+++|++|+|++|.++.++. ..+..+++|+
T Consensus 33 ~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~---~~~~l~~L~~L~Ls~N~l~~l~~-~~f~~l~~L~ 107 (220)
T 2v9t_B 33 TITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPD---AFQGLRSLNSLVLYGNKITELPK-SLFEGLFSLQ 107 (220)
T ss_dssp TCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTT---TTTTCSSCCEEECCSSCCCCCCT-TTTTTCTTCC
T ss_pred CCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHH---HhhCCcCCCEEECCCCcCCccCH-hHccCCCCCC
Confidence 344444444444321 111234556666666666666665443 46667777777777777776654 4456677777
Q ss_pred EEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCC
Q 014792 286 QLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIED 365 (418)
Q Consensus 286 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~ 365 (418)
.|++++|.|+.+.+.. +..+++|+.|+|+ +|.+..
T Consensus 108 ~L~L~~N~l~~~~~~~-----------------~~~l~~L~~L~L~----------------------------~N~l~~ 142 (220)
T 2v9t_B 108 LLLLNANKINCLRVDA-----------------FQDLHNLNLLSLY----------------------------DNKLQT 142 (220)
T ss_dssp EEECCSSCCCCCCTTT-----------------TTTCTTCCEEECC----------------------------SSCCSC
T ss_pred EEECCCCCCCEeCHHH-----------------cCCCCCCCEEECC----------------------------CCcCCE
Confidence 7777777777764322 5667778888887 777777
Q ss_pred CcccccccCCCCCceEEcCCCCCCCCC
Q 014792 366 LASIDSLDSFPKLMDIRLSENPVSDPG 392 (418)
Q Consensus 366 ~~~~~~l~~~~~L~~L~l~~N~l~~~~ 392 (418)
++. ..+..+++|++|+|++|++..++
T Consensus 143 ~~~-~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 143 IAK-GTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp CCT-TTTTTCTTCCEEECCSSCEECSG
T ss_pred ECH-HHHhCCCCCCEEEeCCCCcCCCC
Confidence 764 35677778888888888877655
No 127
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=2.9e-17 Score=145.03 Aligned_cols=151 Identities=22% Similarity=0.244 Sum_probs=105.7
Q ss_pred ceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCC-CCCCCCccEEEec
Q 014792 135 TSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG-LPQLKSIRILVLN 213 (418)
Q Consensus 135 ~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L~ 213 (418)
+.++++++++..++..+ .++|++|++++|.+..+. +..+..+++|++|++++|+++..++. +..+++|++|+++
T Consensus 10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI---PAQTTYLDLETNSLKSLP--NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCccCCCCCC---CCCCcEEEcCCCccCcCC--hhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 45677777777766544 367888888888887632 34567788888888888888866653 5677778888888
Q ss_pred CCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCC
Q 014792 214 CTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNN 293 (418)
Q Consensus 214 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~ 293 (418)
+|.++. ..+..+..+++|++|++++|.++.+++. .+..+++|++|++++|.+++++. ..+..+++|+.|++++|.
T Consensus 85 ~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 85 TNQLQS-LPNGVFDKLTQLKELALNTNQLQSLPDG---VFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred CCcCCc-cCHhHhcCccCCCEEEcCCCcCcccCHh---HhccCCcCCEEECCCCccceeCH-HHhccCCCccEEEecCCC
Confidence 777763 1223346677777888877777766654 35667777777777777776654 446667777777777775
Q ss_pred CC
Q 014792 294 LN 295 (418)
Q Consensus 294 l~ 295 (418)
+.
T Consensus 160 ~~ 161 (208)
T 2o6s_A 160 WD 161 (208)
T ss_dssp BC
T ss_pred ee
Confidence 43
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=1.9e-17 Score=158.99 Aligned_cols=181 Identities=22% Similarity=0.274 Sum_probs=125.1
Q ss_pred cEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCC-CC-CCCCccEEEecCCCCCHHHHHHHHhcCCcccEEE
Q 014792 159 KELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG-LP-QLKSIRILVLNCTGVNWMQVEILKHSLPALEELH 236 (418)
Q Consensus 159 ~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 236 (418)
+.++++++.+..+ |..+ .+.++.|+|++|+++..++. +. .+++|++|+|++|.++.. .+..+..+++|++|+
T Consensus 21 ~~l~c~~~~l~~i---P~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQQLPNV---PQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSSCCSSC---CSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEE
T ss_pred CEEEeCCCCcCcc---CccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEE
Confidence 4566666665542 2221 23466666666666655553 43 666677777776666632 223346778888888
Q ss_pred ccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccC
Q 014792 237 LMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHE 316 (418)
Q Consensus 237 L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~ 316 (418)
|++|.++.+++. .+..+++|+.|+|++|.+....+ ..+..+++|+.|+|++|.|+.+.....
T Consensus 95 Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~-------------- 156 (361)
T 2xot_A 95 LSSNHLHTLDEF---LFSDLQALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQNQISRFPVELI-------------- 156 (361)
T ss_dssp CCSSCCCEECTT---TTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCSCCGGGT--------------
T ss_pred CCCCcCCcCCHH---HhCCCcCCCEEECCCCcccEECH-HHhCCcccCCEEECCCCcCCeeCHHHh--------------
Confidence 888888877654 47788899999999999887754 568888999999999999988732110
Q ss_pred ccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCC--CceEEcCCCCCCCCC
Q 014792 317 ESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPK--LMDIRLSENPVSDPG 392 (418)
Q Consensus 317 ~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~--L~~L~l~~N~l~~~~ 392 (418)
..+..+++|+.|+|+ +|.|..++. ..+..++. |+.|+|++||+..++
T Consensus 157 ~~~~~l~~L~~L~L~----------------------------~N~l~~l~~-~~~~~l~~~~l~~l~l~~N~~~C~C 205 (361)
T 2xot_A 157 KDGNKLPKLMLLDLS----------------------------SNKLKKLPL-TDLQKLPAWVKNGLYLHNNPLECDC 205 (361)
T ss_dssp C----CTTCCEEECC----------------------------SSCCCCCCH-HHHHHSCHHHHTTEECCSSCEECCH
T ss_pred cCcccCCcCCEEECC----------------------------CCCCCccCH-HHhhhccHhhcceEEecCCCccCCc
Confidence 012568899999999 999988874 46677776 488999999999775
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1.1e-19 Score=184.37 Aligned_cols=126 Identities=22% Similarity=0.285 Sum_probs=106.4
Q ss_pred cccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhc
Q 014792 231 ALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVS 310 (418)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 310 (418)
.|+.|++++|.+++++. ++.+++|+.|+|++|.++.+| ..++.+++|+.|+|++|.|+++ |.
T Consensus 442 ~L~~L~Ls~n~l~~lp~-----~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~~L~Ls~N~l~~l--p~--------- 503 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-----LEQLLLVTHLDLSHNRLRALP--PALAALRCLEVLQASDNALENV--DG--------- 503 (567)
T ss_dssp TCSEEECTTSCCSSCCC-----GGGGTTCCEEECCSSCCCCCC--GGGGGCTTCCEEECCSSCCCCC--GG---------
T ss_pred CceEEEecCCCCCCCcC-----ccccccCcEeecCcccccccc--hhhhcCCCCCEEECCCCCCCCC--cc---------
Confidence 69999999999998752 788899999999999999876 4788999999999999999987 42
Q ss_pred cccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCC
Q 014792 311 AHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 390 (418)
Q Consensus 311 ~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~ 390 (418)
+..+++|+.|+|+ +|.+..++....+..+++|+.|+|++|++..
T Consensus 504 --------l~~l~~L~~L~Ls----------------------------~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 504 --------VANLPRLQELLLC----------------------------NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp --------GTTCSSCCEEECC----------------------------SSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred --------cCCCCCCcEEECC----------------------------CCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 6889999999999 9999888311579999999999999999986
Q ss_pred CCCcchhHHHHHHhhCCceeecC
Q 014792 391 PGRGGISRFAIIARLGKIKILNG 413 (418)
Q Consensus 391 ~~~~~~~~~~~i~~l~~L~~Ln~ 413 (418)
.+. .....+..+|+|++||+
T Consensus 548 ~~~---~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 548 EEG---IQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSS---CTTHHHHHCTTCSEEEC
T ss_pred Ccc---HHHHHHHHCcccCccCC
Confidence 542 23344667999999975
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=7.1e-17 Score=143.94 Aligned_cols=154 Identities=21% Similarity=0.229 Sum_probs=131.3
Q ss_pred ceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCCCccEEEec
Q 014792 135 TSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLN 213 (418)
Q Consensus 135 ~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~ 213 (418)
+.++++++.++.++..+. +.+++|+|++|.+..+.. +..+..+++|++|++++|+++..++ .+..+++|++|+++
T Consensus 14 ~~l~~s~n~l~~iP~~~~---~~~~~L~L~~N~l~~~~~-~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP---QYTAELRLNNNEFTVLEA-TGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCEECC-CCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCccCCC---CCCCEEEcCCCcCCccCc-hhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 578999999998876553 577999999999996421 2457899999999999999998877 68999999999999
Q ss_pred CCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCC
Q 014792 214 CTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNN 293 (418)
Q Consensus 214 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~ 293 (418)
+|.++.. .+..+..+++|++|++++|.++.+.+. .+..+++|++|+|++|.+++.++ ..+..+++|+.|++++|.
T Consensus 90 ~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 90 SNRLENV-QHKMFKGLESLKTLMLRSNRITCVGND---SFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSCCCCC-CGGGGTTCSSCCEEECTTSCCCCBCTT---SSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCC
T ss_pred CCccCcc-CHhHhcCCcCCCEEECCCCcCCeECHh---HcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCcC
Confidence 9999853 444568899999999999999998765 57889999999999999999865 678899999999999999
Q ss_pred CCcc
Q 014792 294 LNRI 297 (418)
Q Consensus 294 l~~~ 297 (418)
+...
T Consensus 165 l~c~ 168 (220)
T 2v70_A 165 FNCN 168 (220)
T ss_dssp EECS
T ss_pred CcCC
Confidence 8754
No 131
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=7.4e-17 Score=143.83 Aligned_cols=153 Identities=22% Similarity=0.217 Sum_probs=128.2
Q ss_pred ceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCCCccEEEec
Q 014792 135 TSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLN 213 (418)
Q Consensus 135 ~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~ 213 (418)
+.+++++++++.++..+. ++|++|+|++|.+..+. +..+..+++|++|+|++|+++...+ .+..+++|++|+|+
T Consensus 14 ~~v~c~~~~l~~iP~~l~---~~l~~L~l~~n~i~~i~--~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP---ETITEIRLEQNTIKVIP--PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTTSCCSSCCSSCC---TTCCEEECCSSCCCEEC--TTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCCCCcCcCCCccC---cCCCEEECCCCcCCCcC--HhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 568888888888876553 78999999999998643 4577889999999999999998765 68899999999999
Q ss_pred CCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCC
Q 014792 214 CTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNN 293 (418)
Q Consensus 214 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~ 293 (418)
+|.++. ..+..+..+++|++|++++|.++.+++. .+..+++|++|+|++|.++.++. ..+..+++|+.|++++|+
T Consensus 89 ~N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 89 GNKITE-LPKSLFEGLFSLQLLLLNANKINCLRVD---AFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CCcCCc-cCHhHccCCCCCCEEECCCCCCCEeCHH---HcCCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCC
Confidence 999884 2334457889999999999999988765 58889999999999999998875 568889999999999998
Q ss_pred CCcc
Q 014792 294 LNRI 297 (418)
Q Consensus 294 l~~~ 297 (418)
+.-.
T Consensus 164 ~~c~ 167 (220)
T 2v9t_B 164 FICD 167 (220)
T ss_dssp EECS
T ss_pred cCCC
Confidence 8643
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=1.8e-17 Score=158.58 Aligned_cols=177 Identities=20% Similarity=0.117 Sum_probs=131.8
Q ss_pred ceEEEEechhhHHH-HHhcccccceecccCcCcCC-CCCchhhhcCCccE-EEcCCCCCCChHHHHHHhhcCCCCCEEEc
Q 014792 113 HVSIELVGKDKIQD-KFSKFEELTSAALPYLGVSS-PGANIGTIVTNLKE-LDLTGNLLSDWKDIGAFGEQLPALAVLNL 189 (418)
Q Consensus 113 ~~~l~~~g~~~l~~-~~~~l~~L~~L~L~~~~i~~-~~~~~~~~~~~L~~-L~Ls~n~l~~~~~l~~~~~~l~~L~~L~L 189 (418)
.+.+....++.+|+ .|.++++|++|+|++|.+.. ++...+..++++++ +++.+|.+..+. |..+..+++|++|++
T Consensus 34 ~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~--~~~f~~l~~L~~L~l 111 (350)
T 4ay9_X 34 ELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN--PEAFQNLPNLQYLLI 111 (350)
T ss_dssp EEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC--TTSBCCCTTCCEEEE
T ss_pred EEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC--chhhhhccccccccc
Confidence 33344344456664 68999999999999999865 44344333477665 677789998643 577899999999999
Q ss_pred CCCCCCCccC-CCCCCCCccEEEecC-CCCCHHHHHHHHhcC-CcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCC
Q 014792 190 SNNLMSKEVT-GLPQLKSIRILVLNC-TGVNWMQVEILKHSL-PALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLED 266 (418)
Q Consensus 190 s~n~l~~~~~-~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~ 266 (418)
++|++...++ .+....++..|++.+ +.+....... +..+ ..++.|++++|.++.++.. .....+|+.|++++
T Consensus 112 ~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~-f~~~~~~l~~L~L~~N~i~~i~~~----~f~~~~L~~l~l~~ 186 (350)
T 4ay9_X 112 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS-FVGLSFESVILWLNKNGIQEIHNS----AFNGTQLDELNLSD 186 (350)
T ss_dssp EEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS-STTSBSSCEEEECCSSCCCEECTT----SSTTEEEEEEECTT
T ss_pred cccccccCCchhhcccchhhhhhhccccccccccccc-hhhcchhhhhhccccccccCCChh----hccccchhHHhhcc
Confidence 9999987766 455667788898866 4554321112 2333 4689999999999998765 44557899999985
Q ss_pred -CCCCChhhhhhcCCCCCCCEEecCCCCCCcc
Q 014792 267 -NCIAEWSEILKLCQIRSLEQLYLNKNNLNRI 297 (418)
Q Consensus 267 -n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~ 297 (418)
|.+..++. ..+..+++|+.|++++|+|+.+
T Consensus 187 ~n~l~~i~~-~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 187 NNNLEELPN-DVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp CTTCCCCCT-TTTTTEECCSEEECTTSCCCCC
T ss_pred CCcccCCCH-HHhccCcccchhhcCCCCcCcc
Confidence 78888775 5688999999999999999988
No 133
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.68 E-value=1.3e-16 Score=143.25 Aligned_cols=153 Identities=22% Similarity=0.201 Sum_probs=127.4
Q ss_pred cceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCC-CCCCCCccEEEe
Q 014792 134 LTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG-LPQLKSIRILVL 212 (418)
Q Consensus 134 L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L 212 (418)
-+.++++++++..++..+. ++|++|+|++|.+..+ .|..+..+++|++|+|++|++...++. +..+++|++|+|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~---~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP---TNAQILYLHDNQITKL--EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC---TTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccCCCcCccCCCCC---CCCCEEEcCCCccCcc--CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 4568888888888876553 8899999999999974 367788999999999999999877664 688999999999
Q ss_pred cCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCC
Q 014792 213 NCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKN 292 (418)
Q Consensus 213 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n 292 (418)
++|.++. ..+..+..+++|++|++++|.++.++.. +..+++|++|+|++|.+..++. ..+..+++|+.|++++|
T Consensus 96 s~N~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~lp~~----~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 96 GTNQLTV-LPSAVFDRLVHLKELFMCCNKLTELPRG----IERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CSSCCCC-CCTTTTTTCTTCCEEECCSSCCCSCCTT----GGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTS
T ss_pred CCCcCCc-cChhHhCcchhhCeEeccCCcccccCcc----cccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCC
Confidence 9999884 2334457889999999999999977654 7888999999999999998875 56888999999999999
Q ss_pred CCCcc
Q 014792 293 NLNRI 297 (418)
Q Consensus 293 ~l~~~ 297 (418)
.+...
T Consensus 170 ~~~c~ 174 (229)
T 3e6j_A 170 PWDCE 174 (229)
T ss_dssp CBCTT
T ss_pred CccCC
Confidence 88754
No 134
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=4.7e-17 Score=156.27 Aligned_cols=172 Identities=23% Similarity=0.238 Sum_probs=134.2
Q ss_pred ceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhh-cCCCCCEEEcCCCCCCCccC-CCCCCCCccEEEe
Q 014792 135 TSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGE-QLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVL 212 (418)
Q Consensus 135 ~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~-~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L 212 (418)
+.++++++++..++..+. +.++.|+|++|.++.+. +..+. .+++|++|+|++|+++..++ .+..+++|++|+|
T Consensus 21 ~~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N~l~~l~--~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSRLR--AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCSSCCSSCC---TTCSEEECCSSCCCEEC--TTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCccCccCC---CCCCEEECCCCCCCccC--hhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 578888888888876543 67899999999998743 34555 88999999999999998776 5888999999999
Q ss_pred cCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhc---CCCCCCCEEec
Q 014792 213 NCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKL---CQIRSLEQLYL 289 (418)
Q Consensus 213 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l---~~l~~L~~L~l 289 (418)
++|.+... .+..+..+++|++|+|++|.++.+.+. .+..+++|+.|+|++|.+..++. ..+ ..+++|+.|+|
T Consensus 96 s~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~---~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 96 SSNHLHTL-DEFLFSDLQALEVLLLYNNHIVVVDRN---AFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp CSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTT---TTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEEC
T ss_pred CCCcCCcC-CHHHhCCCcCCCEEECCCCcccEECHH---HhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEEC
Confidence 99998742 333457889999999999999988654 57888999999999999998765 334 56899999999
Q ss_pred CCCCCCcccCCCCCchhhhhccccccCccccCCCC--CcEEEccCC
Q 014792 290 NKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQN--LCCLLLGNS 333 (418)
Q Consensus 290 ~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--L~~L~L~~n 333 (418)
++|+|+.+.... +..++. |+.|+|++|
T Consensus 171 ~~N~l~~l~~~~-----------------~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 171 SSNKLKKLPLTD-----------------LQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CSSCCCCCCHHH-----------------HHHSCHHHHTTEECCSS
T ss_pred CCCCCCccCHHH-----------------hhhccHhhcceEEecCC
Confidence 999998873211 344555 477888866
No 135
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.67 E-value=1.8e-15 Score=133.40 Aligned_cols=146 Identities=16% Similarity=0.174 Sum_probs=95.6
Q ss_pred cEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCC-CCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEc
Q 014792 159 KELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTG-LPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHL 237 (418)
Q Consensus 159 ~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 237 (418)
+.++.+++.+..+ |. ...++|++|++++|+++..++. +..+++|++|++++|.++. ..+..+..+++|++|++
T Consensus 10 ~~v~c~~~~l~~~---p~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 10 TTVECYSQGRTSV---PT--GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TEEECCSSCCSSC---CS--CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred CEEEecCCCccCC---CC--CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChhhcCCCCCcCEEEC
Confidence 5677777777653 22 2345788888888888766553 5677777777777777663 22233456677777777
Q ss_pred cCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCc
Q 014792 238 MGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEE 317 (418)
Q Consensus 238 ~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~ 317 (418)
++|.++.+++. .+..+++|++|++++|.+.+++. ..+..+++|++|++++|.++++....
T Consensus 84 s~n~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~---------------- 143 (208)
T 2o6s_A 84 STNQLQSLPNG---VFDKLTQLKELALNTNQLQSLPD-GVFDKLTQLKDLRLYQNQLKSVPDGV---------------- 143 (208)
T ss_dssp CSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTT----------------
T ss_pred CCCcCCccCHh---HhcCccCCCEEEcCCCcCcccCH-hHhccCCcCCEEECCCCccceeCHHH----------------
Confidence 77777766543 35666777777777777776554 34566777777777777776653211
Q ss_pred cccCCCCCcEEEcc
Q 014792 318 SYLPFQNLCCLLLG 331 (418)
Q Consensus 318 ~~~~l~~L~~L~L~ 331 (418)
+..+++|+.|+++
T Consensus 144 -~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 144 -FDRLTSLQYIWLH 156 (208)
T ss_dssp -TTTCTTCCEEECC
T ss_pred -hccCCCccEEEec
Confidence 4566777777777
No 136
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.66 E-value=1.3e-17 Score=170.47 Aligned_cols=252 Identities=13% Similarity=-0.016 Sum_probs=126.0
Q ss_pred cCCccEEEcCCCCCCCh--HHHHHHhhcCCCCCEEEcCCCCCCCcc----C-CCCCCCCccEEEecCCCCCHHHHHHHHh
Q 014792 155 VTNLKELDLTGNLLSDW--KDIGAFGEQLPALAVLNLSNNLMSKEV----T-GLPQLKSIRILVLNCTGVNWMQVEILKH 227 (418)
Q Consensus 155 ~~~L~~L~Ls~n~l~~~--~~l~~~~~~l~~L~~L~Ls~n~l~~~~----~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 227 (418)
|++|++|+|++|.+.+. ..++..+..+++|++|++++|.+++.. + -+..+++|++|++++|.+.. ++..+.
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--l~~~~~ 240 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFFK 240 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG--GHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH--HHHHHh
Confidence 35555555555544321 113344444555555555555544211 0 12234555555555554442 334445
Q ss_pred cCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCC---CCCc
Q 014792 228 SLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYP---NNDT 304 (418)
Q Consensus 228 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~---~~~~ 304 (418)
.+++|++|+++..............+..+++|+.|+++.+....++. .+..+++|++|++++|.+++.... ....
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI--LFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG--GGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH--HHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 55555555554321111101112235566777777777765444442 456678888888888887654322 2223
Q ss_pred hhhhhcccccc-----CccccCCCCCcEEEccC----------CCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCccc
Q 014792 305 IHELVSAHESH-----EESYLPFQNLCCLLLGN----------SKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASI 369 (418)
Q Consensus 305 ~~~~~~~~~~~-----~~~~~~l~~L~~L~L~~----------n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~ 369 (418)
.++.+++..+. ......+++|+.|++++ |..+... ....+......|+.|+++ +|.+++.. +
T Consensus 319 ~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~-~~~~l~~~~~~L~~L~l~-~~~l~~~~-~ 395 (592)
T 3ogk_B 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR-GLIALAQGCQELEYMAVY-VSDITNES-L 395 (592)
T ss_dssp TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH-HHHHHHHHCTTCSEEEEE-ESCCCHHH-H
T ss_pred CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH-HHHHHHhhCccCeEEEee-cCCccHHH-H
Confidence 34444443210 11123567888888883 3222211 011111223456777774 66665432 2
Q ss_pred ccccC-CCCCceEEcC----CCCCCCCCCcchhHHHHHHhhCCceeecCc
Q 014792 370 DSLDS-FPKLMDIRLS----ENPVSDPGRGGISRFAIIARLGKIKILNGS 414 (418)
Q Consensus 370 ~~l~~-~~~L~~L~l~----~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s 414 (418)
..+.. +++|++|+++ .|.+++.+.. ......+..+++|+.|+++
T Consensus 396 ~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~-~~~~~~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 396 ESIGTYLKNLCDFRLVLLDREERITDLPLD-NGVRSLLIGCKKLRRFAFY 444 (592)
T ss_dssp HHHHHHCCSCCEEEEEECSCCSCCSSCCCH-HHHHHHHHHCTTCCEEEEE
T ss_pred HHHHhhCCCCcEEEEeecCCCccccCchHH-HHHHHHHHhCCCCCEEEEe
Confidence 34444 8889999996 5566543211 1223346678999999885
No 137
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.65 E-value=9e-16 Score=155.07 Aligned_cols=174 Identities=20% Similarity=0.194 Sum_probs=137.4
Q ss_pred CCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEE
Q 014792 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEEL 235 (418)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 235 (418)
.+|+.|+|++|.+.++ |..+ .++|++|++++|+++..+ ..+++|++|++++|.++. ++. +.. +|++|
T Consensus 59 ~~L~~L~Ls~n~L~~l---p~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L 125 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSL---PDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST--LPE-LPA--SLKHL 125 (571)
T ss_dssp TTCSEEECCSSCCSCC---CSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEE
T ss_pred CCccEEEeCCCCCCcc---CHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC--cch-hhc--CCCEE
Confidence 4899999999999863 4433 478999999999998554 567899999999999885 444 332 89999
Q ss_pred EccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhcccccc
Q 014792 236 HLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESH 315 (418)
Q Consensus 236 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~ 315 (418)
++++|.++.++. .+++|+.|+|++|.+++++. .+++|+.|++++|.|+.+ |..
T Consensus 126 ~Ls~N~l~~lp~-------~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L~Ls~N~L~~l--p~l------------- 178 (571)
T 3cvr_A 126 DVDNNQLTMLPE-------LPALLEYINADNNQLTMLPE-----LPTSLEVLSVRNNQLTFL--PEL------------- 178 (571)
T ss_dssp ECCSSCCSCCCC-------CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSCC--CCC-------------
T ss_pred ECCCCcCCCCCC-------cCccccEEeCCCCccCcCCC-----cCCCcCEEECCCCCCCCc--chh-------------
Confidence 999999988653 46899999999999998653 578999999999999886 332
Q ss_pred CccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCC-------ceEEcCCCCC
Q 014792 316 EESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKL-------MDIRLSENPV 388 (418)
Q Consensus 316 ~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L-------~~L~l~~N~l 388 (418)
. ++|+.|+|+ +|.|..+|. +.. +| +.|+|++|.+
T Consensus 179 ----~--~~L~~L~Ls----------------------------~N~L~~lp~---~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 179 ----P--ESLEALDVS----------------------------TNLLESLPA---VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp ----C--TTCCEEECC----------------------------SSCCSSCCC---CC----------CCEEEECCSSCC
T ss_pred ----h--CCCCEEECc----------------------------CCCCCchhh---HHH--hhhcccccceEEecCCCcc
Confidence 2 789999999 999988874 333 66 9999999999
Q ss_pred CCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 389 SDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 389 ~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
+..+ . .+..+++|+.|+++.
T Consensus 220 ~~lp-----~--~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 220 THIP-----E--NILSLDPTCTIILED 239 (571)
T ss_dssp CCCC-----G--GGGGSCTTEEEECCS
T ss_pred eecC-----H--HHhcCCCCCEEEeeC
Confidence 8543 2 245689999999874
No 138
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=7.8e-16 Score=157.32 Aligned_cols=279 Identities=15% Similarity=0.136 Sum_probs=159.7
Q ss_pred hHHHHHhcccccceecccCcCcCCCCC----chhhhcCCccEEEcCCCC--CCChHHHHHHhhcCCCCCEEEcCCCC-CC
Q 014792 123 KIQDKFSKFEELTSAALPYLGVSSPGA----NIGTIVTNLKELDLTGNL--LSDWKDIGAFGEQLPALAVLNLSNNL-MS 195 (418)
Q Consensus 123 ~l~~~~~~l~~L~~L~L~~~~i~~~~~----~~~~~~~~L~~L~Ls~n~--l~~~~~l~~~~~~l~~L~~L~Ls~n~-l~ 195 (418)
.++.....+++|++|++++|.+++... .+...+++|++|++++|. +. ...++..+..+++|++|++++|. +.
T Consensus 147 ~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~-~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 147 GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS-FSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCC-HHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCC-HHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 366667789999999999998877554 222335788888888886 32 23455666677888888887761 10
Q ss_pred C-------------c------------------------------------cC-CC----CCCCCccEEEecCCCCCHHH
Q 014792 196 K-------------E------------------------------------VT-GL----PQLKSIRILVLNCTGVNWMQ 221 (418)
Q Consensus 196 ~-------------~------------------------------------~~-~l----~~l~~L~~L~L~~n~l~~~~ 221 (418)
+ . .. .+ ..+++|++|++++|.++...
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~ 305 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHH
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHH
Confidence 0 0 00 01 13577888888888887766
Q ss_pred HHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCC---------CCCCCChhhhhhcC-CCCCCCEEecCC
Q 014792 222 VEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLE---------DNCIAEWSEILKLC-QIRSLEQLYLNK 291 (418)
Q Consensus 222 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~---------~n~l~~~~~l~~l~-~l~~L~~L~l~~ 291 (418)
+..++..+++|++|++++| +..... ......+++|+.|+++ .+.+++.. +..+. .+++|+.|.++.
T Consensus 306 l~~~~~~~~~L~~L~l~~~-~~~~~l--~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~-l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 306 LVKLLCQCPKLQRLWVLDY-IEDAGL--EVLASTCKDLRELRVFPSEPFVMEPNVALTEQG-LVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp HHHHHTTCTTCCEEEEEGG-GHHHHH--HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH-HHHHHHHCTTCCEEEEEE
T ss_pred HHHHHhcCCCcCEEeCcCc-cCHHHH--HHHHHhCCCCCEEEEecCcccccccCCCCCHHH-HHHHHHhchhHHHHHHhc
Confidence 7777778888888888877 332110 0012246777777773 23444322 22232 367777777777
Q ss_pred CCCCcccCCCC---Cchhhhhccc--c----ccCc----------cccCCCCCcEEEccCCCCCCCCCccchhhhhhhhh
Q 014792 292 NNLNRIYYPNN---DTIHELVSAH--E----SHEE----------SYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFA 352 (418)
Q Consensus 292 n~l~~~~~~~~---~~~~~~~~~~--~----~~~~----------~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l 352 (418)
|.+++...... ...++.+++. + +... .+..+++|+.|++++ .+.. .....+.....+|
T Consensus 382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~-~~~~~l~~~~~~L 458 (594)
T 2p1m_B 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTD-KVFEYIGTYAKKM 458 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCH-HHHHHHHHHCTTC
T ss_pred CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccH-HHHHHHHHhchhc
Confidence 76665422111 1123333333 1 1111 023456677777653 1111 0111122223457
Q ss_pred hhccCCCCCCcCCCcccccc-cCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecCccc
Q 014792 353 FSLHASGNNMIEDLASIDSL-DSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNGSEV 416 (418)
Q Consensus 353 ~~l~~~~~n~i~~~~~~~~l-~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~i 416 (418)
+.|+++ +|.+++... ..+ ..+++|++|+|++|++++ ......+..+++|+.|+++..
T Consensus 459 ~~L~L~-~~~i~~~~~-~~l~~~~~~L~~L~L~~n~~~~-----~~~~~~~~~l~~L~~L~l~~~ 516 (594)
T 2p1m_B 459 EMLSVA-FAGDSDLGM-HHVLSGCDSLRKLEIRDCPFGD-----KALLANASKLETMRSLWMSSC 516 (594)
T ss_dssp CEEEEE-SCCSSHHHH-HHHHHHCTTCCEEEEESCSCCH-----HHHHHTGGGGGGSSEEEEESS
T ss_pred cEeecc-CCCCcHHHH-HHHHhcCCCcCEEECcCCCCcH-----HHHHHHHHhCCCCCEEeeeCC
Confidence 777887 566644321 233 568889999999998842 222223456888998887653
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.59 E-value=1e-16 Score=162.45 Aligned_cols=187 Identities=18% Similarity=0.117 Sum_probs=143.9
Q ss_pred chhhHHHHHhcccccceecccCcC-------------cCCCCC-chhhhcCCccEEE-cCCCCCCChHHHH---HHhhc-
Q 014792 120 GKDKIQDKFSKFEELTSAALPYLG-------------VSSPGA-NIGTIVTNLKELD-LTGNLLSDWKDIG---AFGEQ- 180 (418)
Q Consensus 120 g~~~l~~~~~~l~~L~~L~L~~~~-------------i~~~~~-~~~~~~~~L~~L~-Ls~n~l~~~~~l~---~~~~~- 180 (418)
.++.+|+.++++++|+.|++++|. +.+..+ .+.. +++|+.|+ ++.|.+..+..+. ..+..
T Consensus 360 ~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~-l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l 438 (567)
T 1dce_A 360 KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY-FSTLKAVDPMRAAYLDDLRSKFLLENSVLKM 438 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHH-HHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHH-HHhcccCcchhhcccchhhhhhhhccccccc
Confidence 457899999999999999997764 233333 3344 48888888 6666554332210 01122
Q ss_pred -CCCCCEEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCc
Q 014792 181 -LPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNL 259 (418)
Q Consensus 181 -l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L 259 (418)
...|+.|++++|++++.+ .+..+++|++|+|++|.++ .+|..++.+++|+.|++++|.+++++ .++.+++|
T Consensus 439 ~~~~L~~L~Ls~n~l~~lp-~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp-----~l~~l~~L 510 (567)
T 1dce_A 439 EYADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVD-----GVANLPRL 510 (567)
T ss_dssp HHTTCSEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCG-----GGTTCSSC
T ss_pred CccCceEEEecCCCCCCCc-CccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCc-----ccCCCCCC
Confidence 236999999999999865 5999999999999999998 56777899999999999999999875 38899999
Q ss_pred cEEeCCCCCCCChh-hhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEc
Q 014792 260 QLLNLEDNCIAEWS-EILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLL 330 (418)
Q Consensus 260 ~~L~L~~n~l~~~~-~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 330 (418)
+.|+|++|.+++.. + ..+..+++|+.|++++|.++++.+ ....+ +..+++|+.|++
T Consensus 511 ~~L~Ls~N~l~~~~~p-~~l~~l~~L~~L~L~~N~l~~~~~--~~~~l------------~~~lp~L~~L~l 567 (567)
T 1dce_A 511 QELLLCNNRLQQSAAI-QPLVSCPRLVLLNLQGNSLCQEEG--IQERL------------AEMLPSVSSILT 567 (567)
T ss_dssp CEEECCSSCCCSSSTT-GGGGGCTTCCEEECTTSGGGGSSS--CTTHH------------HHHCTTCSEEEC
T ss_pred cEEECCCCCCCCCCCc-HHHhcCCCCCEEEecCCcCCCCcc--HHHHH------------HHHCcccCccCC
Confidence 99999999999984 3 578999999999999999998832 21111 345889999875
No 140
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=1.3e-15 Score=129.70 Aligned_cols=137 Identities=20% Similarity=0.269 Sum_probs=106.0
Q ss_pred CCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEE
Q 014792 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEEL 235 (418)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 235 (418)
++|++|++++|.+.. ..+|..+..+++|++|++++|.++.. +.+..+++|++|++++|.+... ++..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~-~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBT-TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCCh-hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEE
Confidence 667777777777661 03455567777788888888877766 6677788888888888887742 56666779999999
Q ss_pred EccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhh--hhcCCCCCCCEEecCCCCCCcc
Q 014792 236 HLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI--LKLCQIRSLEQLYLNKNNLNRI 297 (418)
Q Consensus 236 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l--~~l~~l~~L~~L~l~~n~l~~~ 297 (418)
++++|.+++++.. ..+..+++|++|++++|.++..+.. ..+..+++|+.|++++|.+..+
T Consensus 101 ~Ls~N~l~~~~~~--~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 101 NLSGNKLKDISTL--EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp ECBSSSCCSSGGG--GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred eccCCccCcchhH--HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 9999999887521 2478899999999999999887642 3578899999999999998887
No 141
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=4.4e-15 Score=123.68 Aligned_cols=133 Identities=21% Similarity=0.283 Sum_probs=109.1
Q ss_pred cCCcccEEEccCCCCC--ccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCch
Q 014792 228 SLPALEELHLMGNSIS--EITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTI 305 (418)
Q Consensus 228 ~l~~L~~L~L~~n~l~--~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~ 305 (418)
..++|++|++++|.++ .++. .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++.. +..
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~-~~~--- 83 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEG----LTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGL-EVL--- 83 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCS----CCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCT-HHH---
T ss_pred CCccCeEEEccCCcCChhHHHH----HHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchH-HHH---
Confidence 4568999999999998 4443 478889999999999999987 45888999999999999998842 222
Q ss_pred hhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCC
Q 014792 306 HELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSE 385 (418)
Q Consensus 306 ~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~ 385 (418)
+..+++|+.|+++ +|.+.+++....+..+++|++|++++
T Consensus 84 -------------~~~l~~L~~L~ls----------------------------~N~i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 84 -------------AEKCPNLTHLNLS----------------------------GNKIKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp -------------HHHCTTCCEEECT----------------------------TSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred -------------hhhCCCCCEEECC----------------------------CCcCCChHHHHHHhhCCCCCEEeCcC
Confidence 4568999999999 99998876445789999999999999
Q ss_pred CCCCCCCCcchhHHHHHHhhCCceeecCcc
Q 014792 386 NPVSDPGRGGISRFAIIARLGKIKILNGSE 415 (418)
Q Consensus 386 N~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~ 415 (418)
|++.... ......++.+++|+.||++.
T Consensus 123 N~l~~~~---~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 123 CEVTNLN---DYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CGGGGST---THHHHHHHHCTTCCEETTBC
T ss_pred CcccchH---HHHHHHHHHCCCcccccCCC
Confidence 9998543 23345688999999999874
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.58 E-value=7.9e-16 Score=157.26 Aligned_cols=115 Identities=21% Similarity=0.209 Sum_probs=78.0
Q ss_pred HHHHhcccccceecccCcCcCCCCC-chhhhcCCccEEEcCCC-CCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC---
Q 014792 125 QDKFSKFEELTSAALPYLGVSSPGA-NIGTIVTNLKELDLTGN-LLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT--- 199 (418)
Q Consensus 125 ~~~~~~l~~L~~L~L~~~~i~~~~~-~~~~~~~~L~~L~Ls~n-~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~--- 199 (418)
+.....+++|++|+|++|.+++... .+...+++|++|+|++| .+.. ..++..+..+++|++|++++|.++...+
T Consensus 98 ~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 98 EAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST-DGLAAIAATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp HHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH-HHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred HHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH-HHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence 3445677788888888887665433 34434588888888887 3432 2366666778888888888887654321
Q ss_pred -C-CCCCCCccEEEecCCC--CCHHHHHHHHhcCCcccEEEccCC
Q 014792 200 -G-LPQLKSIRILVLNCTG--VNWMQVEILKHSLPALEELHLMGN 240 (418)
Q Consensus 200 -~-l~~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~L~~n 240 (418)
. ...+++|++|++++|. +....+..++..+++|++|++++|
T Consensus 177 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp GGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred HHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 1 2356788888888775 665566666667788888888776
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=6.7e-15 Score=126.28 Aligned_cols=133 Identities=26% Similarity=0.367 Sum_probs=88.8
Q ss_pred cCCcccEEEccCCCCCccCCCCCCccCCC-CCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchh
Q 014792 228 SLPALEELHLMGNSISEITPVSSPIVQGF-DNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIH 306 (418)
Q Consensus 228 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 306 (418)
.+++|++|++++|.++.++. +..+ ++|++|++++|.++++ ..+..+++|++|++++|.|+.+ +...
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-----~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~--~~~~--- 83 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-----LGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRI--GEGL--- 83 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-----GGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEE--CSCH---
T ss_pred CcCCceEEEeeCCCCchhHH-----hhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCccccc--Ccch---
Confidence 35567777777777776532 3333 3777777777777765 3466777777777777777766 2210
Q ss_pred hhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCC
Q 014792 307 ELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSEN 386 (418)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N 386 (418)
+..+++|+.|+++ +|.+++++.+..+..+++|+.|++++|
T Consensus 84 ------------~~~l~~L~~L~L~----------------------------~N~i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 84 ------------DQALPDLTELILT----------------------------NNSLVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp ------------HHHCTTCCEEECC----------------------------SCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred ------------hhcCCCCCEEECC----------------------------CCcCCcchhhHhhhcCCCCCEEEecCC
Confidence 3567777788877 777777775446777777888888888
Q ss_pred CCCCCCCcchhHHHHHHhhCCceeecCccc
Q 014792 387 PVSDPGRGGISRFAIIARLGKIKILNGSEV 416 (418)
Q Consensus 387 ~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~i 416 (418)
++...+ ..+...++.+++|+.||++.+
T Consensus 124 ~i~~~~---~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 124 PVTNKK---HYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp GGGGST---THHHHHHHHCTTCSEETTEEC
T ss_pred CCCCcH---hHHHHHHHHCCccceeCCCcC
Confidence 776433 233445677788888877765
No 144
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1e-14 Score=124.02 Aligned_cols=133 Identities=22% Similarity=0.255 Sum_probs=78.4
Q ss_pred CCcccEEEccCCCCC--ccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchh
Q 014792 229 LPALEELHLMGNSIS--EITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIH 306 (418)
Q Consensus 229 l~~L~~L~L~~n~l~--~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 306 (418)
.++|++|++++|.++ .++. .+..+++|+.|++++|.+.++ ..+..+++|++|++++|.+++.. +..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~----~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~-~~~---- 90 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEG----LTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGL-DML---- 90 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSS----CCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCC-CHH----
T ss_pred cccCCEEECCCCCCChhhHHH----HHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHH-HHH----
Confidence 356666666666665 3332 245566666666666666664 34566666666777666666631 221
Q ss_pred hhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCC
Q 014792 307 ELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSEN 386 (418)
Q Consensus 307 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N 386 (418)
+..+++|+.|+++ +|.+.+++.+..+..+++|++|++++|
T Consensus 91 ------------~~~l~~L~~L~Ls----------------------------~N~l~~~~~~~~l~~l~~L~~L~l~~N 130 (168)
T 2ell_A 91 ------------AEKLPNLTHLNLS----------------------------GNKLKDISTLEPLKKLECLKSLDLFNC 130 (168)
T ss_dssp ------------HHHCTTCCEEECB----------------------------SSSCCSSGGGGGGSSCSCCCEEECCSS
T ss_pred ------------HhhCCCCCEEecc----------------------------CCccCcchhHHHHhcCCCCCEEEeeCC
Confidence 3446666666666 666666654445666666777777776
Q ss_pred CCCCCCCcchhHHHHHHhhCCceeecCccc
Q 014792 387 PVSDPGRGGISRFAIIARLGKIKILNGSEV 416 (418)
Q Consensus 387 ~l~~~~~~~~~~~~~i~~l~~L~~Ln~s~i 416 (418)
++.... ..+...++.+++|+.||++..
T Consensus 131 ~l~~~~---~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 131 EVTNLN---DYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp GGGTST---THHHHHHTTCSSCCEETTEET
T ss_pred cCcchH---HHHHHHHHhCccCcEecCCCC
Confidence 666432 222334566666666666543
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=2.3e-14 Score=135.64 Aligned_cols=158 Identities=13% Similarity=0.148 Sum_probs=89.9
Q ss_pred ccccceecccCcCcC--------------------CCCCchhhh--------cCCccEEEcCCCCCCChHHHHHHhhcCC
Q 014792 131 FEELTSAALPYLGVS--------------------SPGANIGTI--------VTNLKELDLTGNLLSDWKDIGAFGEQLP 182 (418)
Q Consensus 131 l~~L~~L~L~~~~i~--------------------~~~~~~~~~--------~~~L~~L~Ls~n~l~~~~~l~~~~~~l~ 182 (418)
+++|+.|+|++|.|. .++...+.. |++|+.|+|.. .+..+. +..|..++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~--~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIE--DAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEEC--TTTTTTCT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchh--HHHhhcCc
Confidence 788999999999888 222233334 57888888877 666543 35567788
Q ss_pred CCCEEEcCCCCCCCccC-CCCCCCCccEEEecCCC---------------------------------------------
Q 014792 183 ALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTG--------------------------------------------- 216 (418)
Q Consensus 183 ~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~--------------------------------------------- 216 (418)
+|+.|+++.|.+....+ .|..+.++..+.+....
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~ 204 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI 204 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence 88888888887765444 35555555544433310
Q ss_pred --------CCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCC-EE
Q 014792 217 --------VNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLE-QL 287 (418)
Q Consensus 217 --------l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~-~L 287 (418)
+.......+...+++|+.+++++|.++.++.. .+..+.+|+.++|..| +..++. .++..+++|+ .+
T Consensus 205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~---aF~~~~~L~~l~l~~n-i~~I~~-~aF~~~~~L~~~l 279 (329)
T 3sb4_A 205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDF---TFAQKKYLLKIKLPHN-LKTIGQ-RVFSNCGRLAGTL 279 (329)
T ss_dssp SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTT---TTTTCTTCCEEECCTT-CCEECT-TTTTTCTTCCEEE
T ss_pred ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHh---hhhCCCCCCEEECCcc-cceehH-HHhhCChhccEEE
Confidence 11111222222355666666665555555543 4555556666666555 444443 4555555665 66
Q ss_pred ecCCCCCCcc
Q 014792 288 YLNKNNLNRI 297 (418)
Q Consensus 288 ~l~~n~l~~~ 297 (418)
++.+ .++.+
T Consensus 280 ~l~~-~l~~I 288 (329)
T 3sb4_A 280 ELPA-SVTAI 288 (329)
T ss_dssp EECT-TCCEE
T ss_pred EEcc-cceEE
Confidence 6655 45444
No 146
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=4.3e-15 Score=123.74 Aligned_cols=130 Identities=22% Similarity=0.322 Sum_probs=83.2
Q ss_pred CCccEEEcCCCCCC-ChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccE
Q 014792 156 TNLKELDLTGNLLS-DWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEE 234 (418)
Q Consensus 156 ~~L~~L~Ls~n~l~-~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 234 (418)
++|++|++++|.+. + .+|..+..+++|++|++++|.++.. +.+..+++|++|++++|.+.. .++..+..+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEG--KLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSG-GLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTT--BCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCS-CTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChh--HHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccc-hHHHHhhhCCCCCE
Confidence 45666666666655 2 2344455666666666666666655 556666677777777776664 25555566777888
Q ss_pred EEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhh--hhcCCCCCCCEEecCC
Q 014792 235 LHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI--LKLCQIRSLEQLYLNK 291 (418)
Q Consensus 235 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l--~~l~~l~~L~~L~l~~ 291 (418)
|++++|.+++++.. ..+..+++|++|++++|.+++.+.. ..+..+++|+.|++++
T Consensus 93 L~ls~N~i~~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTI--EPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHH--GGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHH--HHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 88888777765310 1366777788888888877766542 2466677888877753
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=5.3e-17 Score=142.29 Aligned_cols=172 Identities=24% Similarity=0.350 Sum_probs=126.3
Q ss_pred HHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCcc
Q 014792 174 IGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIV 253 (418)
Q Consensus 174 l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 253 (418)
....+...+.++.++++.+.+.+..+.+. .++..+..+++|++|++++|.++.++ .+
T Consensus 10 ~~~~~~~~~~l~~l~l~~~~l~~~~~~l~------------------~l~~~~~~l~~L~~L~ls~n~l~~l~-----~~ 66 (198)
T 1ds9_A 10 AIRIFEERKSVVATEAEKVELHGMIPPIE------------------KMDATLSTLKACKHLALSTNNIEKIS-----SL 66 (198)
T ss_dssp HHHHHHHTTCCCCTTCSEEECCBCCTTCC------------------CCHHHHHHTTTCSEEECSEEEESCCC-----CH
T ss_pred HHHHHHhcccccCcchheeEeccccCcHh------------------hhhHHHhcCCCCCEEECCCCCCcccc-----cc
Confidence 33445677788888887777775543321 23335577888889999888888765 26
Q ss_pred CCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCC
Q 014792 254 QGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNS 333 (418)
Q Consensus 254 ~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 333 (418)
..+++|++|++++|.+..++. .+..+++|+.|++++|.++++ +. +..+++|+.|+++
T Consensus 67 ~~l~~L~~L~l~~n~l~~l~~--~~~~~~~L~~L~L~~N~l~~l--~~-----------------~~~l~~L~~L~l~-- 123 (198)
T 1ds9_A 67 SGMENLRILSLGRNLIKKIEN--LDAVADTLEELWISYNQIASL--SG-----------------IEKLVNLRVLYMS-- 123 (198)
T ss_dssp HHHTTCCEEEEEEEEECSCSS--HHHHHHHCSEEEEEEEECCCH--HH-----------------HHHHHHSSEEEES--
T ss_pred ccCCCCCEEECCCCCcccccc--hhhcCCcCCEEECcCCcCCcC--Cc-----------------cccCCCCCEEECC--
Confidence 778889999999988887663 345568899999999988876 22 5677889999999
Q ss_pred CCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCCc----chhHHHHHHhhCCce
Q 014792 334 KKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRG----GISRFAIIARLGKIK 409 (418)
Q Consensus 334 ~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~----~~~~~~~i~~l~~L~ 409 (418)
+|.+.+++.+..+..+++|++|++++|++.+.... ...+...+..+++|+
T Consensus 124 --------------------------~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~ 177 (198)
T 1ds9_A 124 --------------------------NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK 177 (198)
T ss_dssp --------------------------EEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCS
T ss_pred --------------------------CCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcE
Confidence 88888877555688899999999999988643211 233455678899999
Q ss_pred eecCcccC
Q 014792 410 ILNGSEVN 417 (418)
Q Consensus 410 ~Ln~s~i~ 417 (418)
.||+..|+
T Consensus 178 ~Ld~~~i~ 185 (198)
T 1ds9_A 178 KLDGMPVD 185 (198)
T ss_dssp EECCGGGT
T ss_pred EECCcccC
Confidence 99988776
No 148
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.50 E-value=5.7e-15 Score=154.17 Aligned_cols=189 Identities=13% Similarity=0.062 Sum_probs=92.6
Q ss_pred cccceecccCcCcCCCCCchhhhcCC-----ccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCC
Q 014792 132 EELTSAALPYLGVSSPGANIGTIVTN-----LKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206 (418)
Q Consensus 132 ~~L~~L~L~~~~i~~~~~~~~~~~~~-----L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~ 206 (418)
+.++.|+|.++.+...+..+... .. +..++++.|.+. ..+..+..+++|+.|+|++|.+...++.+..+++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~-l~Ls~~~i~~~~~~~n~~~---~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQH-KKLSQYSIDEDDDIENRMV---MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDF 248 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCS
T ss_pred CccceEEeeCCCCCcchhhHhhc-CccCcccccCcccccccee---cChhhhccCCCCcEEECCCCCCCCCChhhcCCCC
Confidence 34566666666666543322111 11 222222333322 2356677788888888888888766556667788
Q ss_pred ccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCE
Q 014792 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQ 286 (418)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~ 286 (418)
|++|+|++|.++ .++..+..+++|++|+|++|.++.++. .++.+++|++|+|++|.|..++. .++.+++|+.
T Consensus 249 L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~L~~N~l~~lp~--~~~~l~~L~~ 320 (727)
T 4b8c_D 249 LTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPA----ELGSCFQLKYFYFFDNMVTTLPW--EFGNLCNLQF 320 (727)
T ss_dssp CSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCS----SGGGGTTCSEEECCSSCCCCCCS--STTSCTTCCC
T ss_pred CCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccCh----hhcCCCCCCEEECCCCCCCccCh--hhhcCCCccE
Confidence 888888888877 455556778888888888888876654 36777888888888888877653 4777888888
Q ss_pred EecCCCCCCcccCCCCCc---hhhhhccccccCccccCCCCCcEEEccCC
Q 014792 287 LYLNKNNLNRIYYPNNDT---IHELVSAHESHEESYLPFQNLCCLLLGNS 333 (418)
Q Consensus 287 L~l~~n~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 333 (418)
|+|++|.|++..+..... ....+.+..|.+.+. ....|+.|+++.|
T Consensus 321 L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~-~p~~l~~l~l~~n 369 (727)
T 4b8c_D 321 LGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP-LPHERRFIEINTD 369 (727)
T ss_dssp EECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCC---------
T ss_pred EeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc-CccccceeEeecc
Confidence 888888887654322211 111234445444322 2345677777733
No 149
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.49 E-value=3.1e-14 Score=123.93 Aligned_cols=129 Identities=27% Similarity=0.285 Sum_probs=67.8
Q ss_pred ceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCCCccEEEec
Q 014792 135 TSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLN 213 (418)
Q Consensus 135 ~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~ 213 (418)
+.+++++++++.++..+. .+|++|+|++|.+..+.. ...+..+++|++|+|++|++++..+ .+..+
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--------- 77 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISS-DGLFGRLPHLVKLELKRNQLTGIEPNAFEGA--------- 77 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCC-SCSGGGCTTCCEEECCSSCCCCBCTTTTTTC---------
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCC-ccccccCCCCCEEECCCCCCCCcCHhHcCCc---------
Confidence 455666666655554332 356666666666554210 0124556666666666666655433 34444
Q ss_pred CCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCC
Q 014792 214 CTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNN 293 (418)
Q Consensus 214 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~ 293 (418)
++|++|++++|.++.+++. .+..+++|++|+|++|.+++..+ ..+..+++|++|++++|.
T Consensus 78 ----------------~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 78 ----------------SHIQELQLGENKIKEISNK---MFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp ----------------TTCCEEECCSCCCCEECSS---SSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCC
T ss_pred ----------------ccCCEEECCCCcCCccCHH---HhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCC
Confidence 4555555555555554433 34455556666666665555433 345555566666666665
Q ss_pred CCc
Q 014792 294 LNR 296 (418)
Q Consensus 294 l~~ 296 (418)
++.
T Consensus 138 l~c 140 (192)
T 1w8a_A 138 FNC 140 (192)
T ss_dssp BCC
T ss_pred ccC
Confidence 543
No 150
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.48 E-value=1e-13 Score=120.60 Aligned_cols=126 Identities=22% Similarity=0.301 Sum_probs=94.1
Q ss_pred CEEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeC
Q 014792 185 AVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNL 264 (418)
Q Consensus 185 ~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 264 (418)
+++++++|.+...+..+.. ++++|++++|.+........+..+++|++|++++|.++++.+. .+..+++|++|+|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN---AFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT---TTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh---HcCCcccCCEEEC
Confidence 4555555555544433322 5666666666555321112347788999999999999988654 5888999999999
Q ss_pred CCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCC
Q 014792 265 EDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNS 333 (418)
Q Consensus 265 ~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 333 (418)
++|.+++.++ ..+..+++|++|++++|+|+++.+.. +..+++|+.|+|++|
T Consensus 86 s~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~-----------------~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 86 GENKIKEISN-KMFLGLHQLKTLNLYDNQISCVMPGS-----------------FEHLNSLTSLNLASN 136 (192)
T ss_dssp CSCCCCEECS-SSSTTCTTCCEEECCSSCCCEECTTS-----------------STTCTTCCEEECTTC
T ss_pred CCCcCCccCH-HHhcCCCCCCEEECCCCcCCeeCHHH-----------------hhcCCCCCEEEeCCC
Confidence 9999998775 56888999999999999999885333 678899999999977
No 151
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=9e-14 Score=121.08 Aligned_cols=126 Identities=21% Similarity=0.243 Sum_probs=85.5
Q ss_pred ceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCCCccEEEec
Q 014792 135 TSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLN 213 (418)
Q Consensus 135 ~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~ 213 (418)
+.+++++++++.++..+ .++|++|+|++|.+.. +|..+..+++|++|++++|+++...+ .+..+++|++|+|+
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~---ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTL---VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCS---CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCch---hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 56788888888877644 3688899999998885 45678888899999999998887765 46667777777777
Q ss_pred CCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCC
Q 014792 214 CTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIA 270 (418)
Q Consensus 214 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 270 (418)
+|.++.. .+..+..+++|++|++++|.++.+++. .+..+++|+.|+|++|.+.
T Consensus 87 ~N~l~~i-~~~~f~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNRLRCI-PPRTFDGLKSLRLLSLHGNDISVVPEG---AFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSCCCBC-CTTTTTTCTTCCEEECCSSCCCBCCTT---TTTTCTTCCEEECCSSCEE
T ss_pred CCccCEe-CHHHhCCCCCCCEEECCCCCCCeeChh---hhhcCccccEEEeCCCCee
Confidence 6666532 222335556666666666666655543 3455556666666666554
No 152
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.47 E-value=4.3e-13 Score=114.93 Aligned_cols=131 Identities=21% Similarity=0.260 Sum_probs=97.4
Q ss_pred cEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEE
Q 014792 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287 (418)
Q Consensus 208 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L 287 (418)
+.++++++.+.. ++. ...++|++|++++|.++.+++. .+..+++|++|++++|.++..++ ..+..+++|+.|
T Consensus 10 ~~l~~~~~~l~~--~p~--~~~~~l~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L 81 (177)
T 2o6r_A 10 TEIRCNSKGLTS--VPT--GIPSSATRLELESNKLQSLPHG---VFDKLTQLTKLSLSQNQIQSLPD-GVFDKLTKLTIL 81 (177)
T ss_dssp TEEECCSSCCSS--CCT--TCCTTCSEEECCSSCCCCCCTT---TTTTCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEE
T ss_pred CEEEecCCCCcc--CCC--CCCCCCcEEEeCCCcccEeCHH---HhcCcccccEEECCCCcceEeCh-hHccCCCccCEE
Confidence 445555555442 221 2235788888888888877654 46778889999999998887764 456788899999
Q ss_pred ecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCc
Q 014792 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLA 367 (418)
Q Consensus 288 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~ 367 (418)
++++|.|+.+.+.. +..+++|+.|+++ +|.+..++
T Consensus 82 ~l~~N~l~~~~~~~-----------------~~~l~~L~~L~l~----------------------------~N~l~~~~ 116 (177)
T 2o6r_A 82 YLHENKLQSLPNGV-----------------FDKLTQLKELALD----------------------------TNQLKSVP 116 (177)
T ss_dssp ECCSSCCCCCCTTT-----------------TTTCTTCCEEECC----------------------------SSCCSCCC
T ss_pred ECCCCCccccCHHH-----------------hhCCcccCEEECc----------------------------CCcceEeC
Confidence 99999988773222 5678899999999 88888887
Q ss_pred ccccccCCCCCceEEcCCCCCCCCC
Q 014792 368 SIDSLDSFPKLMDIRLSENPVSDPG 392 (418)
Q Consensus 368 ~~~~l~~~~~L~~L~l~~N~l~~~~ 392 (418)
. ..+..+++|++|++++|++...+
T Consensus 117 ~-~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 117 D-GIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp T-TTTTTCTTCCEEECCSSCBCCCH
T ss_pred H-HHhcCCcccCEEEecCCCeeccC
Confidence 4 35678899999999999998654
No 153
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.7e-14 Score=123.66 Aligned_cols=135 Identities=24% Similarity=0.362 Sum_probs=88.4
Q ss_pred CCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEE
Q 014792 156 TNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEEL 235 (418)
Q Consensus 156 ~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 235 (418)
++|++|++++|.+..+ +......++|++|++++|.+++. +.+..+++|++|++++|.++.. .+..+..+++|++|
T Consensus 19 ~~L~~L~l~~n~l~~i---~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVI---ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTEL 93 (176)
T ss_dssp TSCEEEECTTSCCCSC---CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEE
T ss_pred CCceEEEeeCCCCchh---HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccccc-CcchhhcCCCCCEE
Confidence 5667777777766643 22223333677777777777654 5666677777777777776631 22334677888888
Q ss_pred EccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhh--hhcCCCCCCCEEecCCCCCCcc
Q 014792 236 HLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEI--LKLCQIRSLEQLYLNKNNLNRI 297 (418)
Q Consensus 236 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l--~~l~~l~~L~~L~l~~n~l~~~ 297 (418)
++++|.+..++.. ..+..+++|+.|++++|.+...+.. ..+..+++|+.|++++|.+...
T Consensus 94 ~L~~N~i~~~~~~--~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 94 ILTNNSLVELGDL--DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp ECCSCCCCCGGGG--GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred ECCCCcCCcchhh--HhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 8888888766531 1366778888888888887765431 1366788888888888876543
No 154
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.45 E-value=4.4e-13 Score=116.67 Aligned_cols=124 Identities=20% Similarity=0.222 Sum_probs=77.2
Q ss_pred CEEEcCCCCCCCccCCCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeC
Q 014792 185 AVLNLSNNLMSKEVTGLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNL 264 (418)
Q Consensus 185 ~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 264 (418)
+++++++|.+...+..+. ++|++|++++|.++ .++..+..+++|++|++++|.++.+++. .+..+++|++|+|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~---~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQ---SFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEEC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHh---HccCCCCCCEEEC
Confidence 345555555554443322 35566666666555 2334456667777777777777766544 4666777777777
Q ss_pred CCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCC
Q 014792 265 EDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNS 333 (418)
Q Consensus 265 ~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n 333 (418)
++|.++.+++ ..+..+++|+.|++++|.|+.+.... +..+++|+.|+|++|
T Consensus 86 s~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~~~~~~-----------------~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 86 SYNRLRCIPP-RTFDGLKSLRLLSLHGNDISVVPEGA-----------------FNDLSALSHLAIGAN 136 (193)
T ss_dssp CSSCCCBCCT-TTTTTCTTCCEEECCSSCCCBCCTTT-----------------TTTCTTCCEEECCSS
T ss_pred CCCccCEeCH-HHhCCCCCCCEEECCCCCCCeeChhh-----------------hhcCccccEEEeCCC
Confidence 7777777654 45667777777777777777663211 456677777777744
No 155
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.42 E-value=8e-13 Score=113.26 Aligned_cols=129 Identities=22% Similarity=0.274 Sum_probs=66.4
Q ss_pred ceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCccEEEecC
Q 014792 135 TSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSIRILVLNC 214 (418)
Q Consensus 135 ~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~L~~ 214 (418)
+.++++++++..++..+ .++|++|++++|.+..+. +..+..+++|++|++++|+++..++.
T Consensus 10 ~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~-------------- 70 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLP--HGVFDKLTQLTKLSLSQNQIQSLPDG-------------- 70 (177)
T ss_dssp TEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCCCCTT--------------
T ss_pred CEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeC--HHHhcCcccccEEECCCCcceEeChh--------------
Confidence 45566666665554322 245666666666655422 23345556666666666665544432
Q ss_pred CCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCC
Q 014792 215 TGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNL 294 (418)
Q Consensus 215 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l 294 (418)
.+..+++|++|++++|.++.+++. .+..+++|++|++++|.++.++. ..+..+++|++|++++|.+
T Consensus 71 ----------~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 71 ----------VFDKLTKLTILYLHENKLQSLPNG---VFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp ----------TTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCB
T ss_pred ----------HccCCCccCEEECCCCCccccCHH---HhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCe
Confidence 123444555555555555544432 23445555555555555555443 2344455555555555555
Q ss_pred Cc
Q 014792 295 NR 296 (418)
Q Consensus 295 ~~ 296 (418)
..
T Consensus 137 ~~ 138 (177)
T 2o6r_A 137 DC 138 (177)
T ss_dssp CC
T ss_pred ec
Confidence 43
No 156
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=3.6e-15 Score=130.55 Aligned_cols=144 Identities=26% Similarity=0.334 Sum_probs=82.7
Q ss_pred HHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCC
Q 014792 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLK 205 (418)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~ 205 (418)
..+.....++.++++.+.+.+..+. +. .+|..+..+++|++|++++|++...+ .+..++
T Consensus 12 ~~~~~~~~l~~l~l~~~~l~~~~~~-----------------l~---~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~ 70 (198)
T 1ds9_A 12 RIFEERKSVVATEAEKVELHGMIPP-----------------IE---KMDATLSTLKACKHLALSTNNIEKIS-SLSGME 70 (198)
T ss_dssp HHHHHTTCCCCTTCSEEECCBCCTT-----------------CC---CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHT
T ss_pred HHHHhcccccCcchheeEeccccCc-----------------Hh---hhhHHHhcCCCCCEEECCCCCCcccc-ccccCC
Confidence 3456667777777777766554321 11 23344555555555555555555432 444555
Q ss_pred CccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCC
Q 014792 206 SIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLE 285 (418)
Q Consensus 206 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~ 285 (418)
+|++|++++|.+. .++..+..+++|++|++++|.+++++ .+..+++|++|++++|.+.+++.+..+..+++|+
T Consensus 71 ~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~-----~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 71 NLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLS-----GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLE 143 (198)
T ss_dssp TCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHH-----HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCS
T ss_pred CCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCC-----ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCC
Confidence 5566666555554 23334444566666666666666543 2455566666666666666655444566666677
Q ss_pred EEecCCCCCCcc
Q 014792 286 QLYLNKNNLNRI 297 (418)
Q Consensus 286 ~L~l~~n~l~~~ 297 (418)
+|++++|.+++.
T Consensus 144 ~L~l~~N~l~~~ 155 (198)
T 1ds9_A 144 DLLLAGNPLYND 155 (198)
T ss_dssp EEEECSCHHHHH
T ss_pred EEEecCCccccc
Confidence 777777666554
No 157
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=4.6e-12 Score=107.85 Aligned_cols=126 Identities=19% Similarity=0.206 Sum_probs=100.2
Q ss_pred cccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhc
Q 014792 231 ALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVS 310 (418)
Q Consensus 231 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 310 (418)
..+++++++|.++.++.. + .++|++|+|++|.++++++ ..+..+++|++|++++|+|+.+.+..
T Consensus 10 ~~~~l~~s~n~l~~ip~~----~--~~~l~~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~--------- 73 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTG----I--PTTTQVLYLYDNQITKLEP-GVFDRLTQLTRLDLDNNQLTVLPAGV--------- 73 (170)
T ss_dssp ETTEEECTTSCCSSCCSC----C--CTTCSEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCCCCCCTTT---------
T ss_pred CCCEEEeCCCCcCccCcc----C--CCCCcEEEcCCCcCCccCh-hhhcCcccCCEEECCCCCcCccChhh---------
Confidence 467899999999998754 2 3789999999999999865 67889999999999999999884222
Q ss_pred cccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCC
Q 014792 311 AHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSD 390 (418)
Q Consensus 311 ~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~ 390 (418)
+..+++|+.|+|+ +|.+..++. ..+..+++|+.|+|++|++..
T Consensus 74 --------f~~l~~L~~L~L~----------------------------~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 74 --------FDKLTQLTQLSLN----------------------------DNQLKSIPR-GAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp --------TTTCTTCCEEECC----------------------------SSCCCCCCT-TTTTTCTTCCEEECCSSCBCT
T ss_pred --------ccCCCCCCEEECC----------------------------CCccCEeCH-HHhcCCCCCCEEEeCCCCCCC
Confidence 5788999999999 999998874 458899999999999999997
Q ss_pred CCCcchhHHHHHHhhCCce
Q 014792 391 PGRGGISRFAIIARLGKIK 409 (418)
Q Consensus 391 ~~~~~~~~~~~i~~l~~L~ 409 (418)
.+.........+...+.+.
T Consensus 117 ~c~~l~~l~~~l~~~~~~~ 135 (170)
T 3g39_A 117 ACSDILYLSRWISQHPGLV 135 (170)
T ss_dssp TBGGGHHHHHHHHHCGGGE
T ss_pred CchhHHHHHHHHHhCccee
Confidence 7633333333455555443
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.37 E-value=2.8e-14 Score=134.99 Aligned_cols=222 Identities=12% Similarity=0.081 Sum_probs=121.1
Q ss_pred cccccceecccCcCcCCC-CCchhhhcCCccEEEcCCCCCCCh-------HH----------H-HHHhhc--------CC
Q 014792 130 KFEELTSAALPYLGVSSP-GANIGTIVTNLKELDLTGNLLSDW-------KD----------I-GAFGEQ--------LP 182 (418)
Q Consensus 130 ~l~~L~~L~L~~~~i~~~-~~~~~~~~~~L~~L~Ls~n~l~~~-------~~----------l-~~~~~~--------l~ 182 (418)
.+.+++.|.++++ +... ...+...+++|++|||++|.+..+ +. + ...|.. ++
T Consensus 23 ~~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 23 EANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp HHHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred hhCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccC
Confidence 4667888888764 2111 113334358899999999998821 00 1 123445 66
Q ss_pred CCCEEEcCCCCCCCccC-CCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCC----CccCCCCCCccC---
Q 014792 183 ALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSI----SEITPVSSPIVQ--- 254 (418)
Q Consensus 183 ~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~~~--- 254 (418)
+|+.|++.. .+....+ .|..+++|+.+.+.+|.+.. ..+..+..+.++..+.+..+.. ..+... .+.
T Consensus 102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~-i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~---~f~~~~ 176 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPN-LLPEALADSVTAIFIPLGSSDAYRFKNRWEHF---AFIEGE 176 (329)
T ss_dssp TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCE-ECTTSSCTTTCEEEECTTCTHHHHTSTTTTTS---CEEESC
T ss_pred CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccc-cchhhhcCCCceEEecCcchhhhhcccccccc---cccccc
Confidence 777777766 5555444 46666777777776665542 1122223344444444333110 000000 000
Q ss_pred -----------------------------------------------CCCCccEEeCCCCCCCChhhhhhcCCCCCCCEE
Q 014792 255 -----------------------------------------------GFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287 (418)
Q Consensus 255 -----------------------------------------------~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L 287 (418)
.+++|+.++|++|.++.++. .++..+++|+.+
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~-~aF~~~~~L~~l 255 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD-FTFAQKKYLLKI 255 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT-TTTTTCTTCCEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH-hhhhCCCCCCEE
Confidence 14455555555555555443 445555555555
Q ss_pred ecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCc-EEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCC
Q 014792 288 YLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLC-CLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDL 366 (418)
Q Consensus 288 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~ 366 (418)
++.+| ++.+.... |..|++|+ .+++. + .++.+
T Consensus 256 ~l~~n-i~~I~~~a-----------------F~~~~~L~~~l~l~----------------------------~-~l~~I 288 (329)
T 3sb4_A 256 KLPHN-LKTIGQRV-----------------FSNCGRLAGTLELP----------------------------A-SVTAI 288 (329)
T ss_dssp ECCTT-CCEECTTT-----------------TTTCTTCCEEEEEC----------------------------T-TCCEE
T ss_pred ECCcc-cceehHHH-----------------hhCChhccEEEEEc----------------------------c-cceEE
Confidence 55554 44442111 45555555 55555 4 66666
Q ss_pred cccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeec
Q 014792 367 ASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILN 412 (418)
Q Consensus 367 ~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln 412 (418)
+. .++..|++|++|++.+|.+..... .+...+++|+.|.
T Consensus 289 ~~-~aF~~c~~L~~l~l~~n~i~~I~~------~aF~~~~~L~~ly 327 (329)
T 3sb4_A 289 EF-GAFMGCDNLRYVLATGDKITTLGD------ELFGNGVPSKLIY 327 (329)
T ss_dssp CT-TTTTTCTTEEEEEECSSCCCEECT------TTTCTTCCCCEEE
T ss_pred ch-hhhhCCccCCEEEeCCCccCccch------hhhcCCcchhhhc
Confidence 54 478899999999999998874332 2355688888775
No 159
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=1e-12 Score=137.16 Aligned_cols=113 Identities=21% Similarity=0.254 Sum_probs=60.0
Q ss_pred HHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCC
Q 014792 223 EILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNN 302 (418)
Q Consensus 223 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~ 302 (418)
+..+..++.|+.|+|++|.+..++.. +..+++|++|+|++|.|+.++ ..+..+++|+.|+|++|.|+.+ |..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~~l~~~----~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~~L~Ls~N~l~~l--p~~ 288 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIFNISAN----IFKYDFLTRLYLNGNSLTELP--AEIKNLSNLRVLDLSHNRLTSL--PAE 288 (727)
T ss_dssp -----CCCCCCEEECTTSCCSCCCGG----GGGCCSCSCCBCTTSCCSCCC--GGGGGGTTCCEEECTTSCCSSC--CSS
T ss_pred hhhhccCCCCcEEECCCCCCCCCChh----hcCCCCCCEEEeeCCcCcccC--hhhhCCCCCCEEeCcCCcCCcc--Chh
Confidence 33344555566666666655544432 335556666666666655443 2355556666666666665544 332
Q ss_pred CchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEE
Q 014792 303 DTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIR 382 (418)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~ 382 (418)
+..+++|+.|+|+ +|.++.+|. .+..+++|+.|+
T Consensus 289 ----------------~~~l~~L~~L~L~----------------------------~N~l~~lp~--~~~~l~~L~~L~ 322 (727)
T 4b8c_D 289 ----------------LGSCFQLKYFYFF----------------------------DNMVTTLPW--EFGNLCNLQFLG 322 (727)
T ss_dssp ----------------GGGGTTCSEEECC----------------------------SSCCCCCCS--STTSCTTCCCEE
T ss_pred ----------------hcCCCCCCEEECC----------------------------CCCCCccCh--hhhcCCCccEEe
Confidence 4555566666666 555555552 355556666666
Q ss_pred cCCCCCC
Q 014792 383 LSENPVS 389 (418)
Q Consensus 383 l~~N~l~ 389 (418)
|++|++.
T Consensus 323 L~~N~l~ 329 (727)
T 4b8c_D 323 VEGNPLE 329 (727)
T ss_dssp CTTSCCC
T ss_pred CCCCccC
Confidence 6666555
No 160
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=1.5e-11 Score=105.06 Aligned_cols=108 Identities=21% Similarity=0.250 Sum_probs=91.1
Q ss_pred ccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhcc
Q 014792 232 LEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSA 311 (418)
Q Consensus 232 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 311 (418)
-+.+++++|.++.++.. + .++|+.|+|++|.+.+.++ ..+..+++|+.|+|++|+|+.+... .
T Consensus 14 ~~~l~~~~n~l~~iP~~----~--~~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~~-~--------- 76 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAG----I--PTDKQRLWLNNNQITKLEP-GVFDHLVNLQQLYFNSNKLTAIPTG-V--------- 76 (174)
T ss_dssp SSEEECCSSCCSSCCSC----C--CTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTT-T---------
T ss_pred CcEEEeCCCCCCccCCC----c--CCCCcEEEeCCCCccccCH-HHhcCCcCCCEEECCCCCCCccChh-H---------
Confidence 47899999999888764 3 2789999999999998865 5788999999999999999988322 1
Q ss_pred ccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCC
Q 014792 312 HESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDP 391 (418)
Q Consensus 312 ~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~ 391 (418)
+..+++|+.|+|+ +|.|..++. ..+..+++|+.|+|++|++...
T Consensus 77 -------~~~l~~L~~L~L~----------------------------~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 77 -------FDKLTQLTQLDLN----------------------------DNHLKSIPR-GAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp -------TTTCTTCCEEECC----------------------------SSCCCCCCT-TTTTTCTTCSEEECCSSCBCTT
T ss_pred -------hCCcchhhEEECC----------------------------CCccceeCH-HHhccccCCCEEEeCCCCcccc
Confidence 5788999999999 999998874 3588999999999999999976
Q ss_pred C
Q 014792 392 G 392 (418)
Q Consensus 392 ~ 392 (418)
+
T Consensus 121 ~ 121 (174)
T 2r9u_A 121 C 121 (174)
T ss_dssp B
T ss_pred c
Confidence 6
No 161
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=8.2e-14 Score=133.89 Aligned_cols=164 Identities=18% Similarity=0.134 Sum_probs=106.5
Q ss_pred cCCccEEEcCCCCCCCh--HHHHHHhhcC-CCCCEEEcCCCCCCCccC-CC-CCCCCccEEEecCCCCCHHHHHHHHh--
Q 014792 155 VTNLKELDLTGNLLSDW--KDIGAFGEQL-PALAVLNLSNNLMSKEVT-GL-PQLKSIRILVLNCTGVNWMQVEILKH-- 227 (418)
Q Consensus 155 ~~~L~~L~Ls~n~l~~~--~~l~~~~~~l-~~L~~L~Ls~n~l~~~~~-~l-~~l~~L~~L~L~~n~l~~~~~~~~~~-- 227 (418)
+++|++|+|++|.++.. ..+...+... ++|++|+|++|.++.... .+ ..+.+|++|+|++|.++......+..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 47899999999998863 2344444433 689999999998864322 22 24567888999999888655444432
Q ss_pred --cCCcccEEEccCCCCCccCCC-CCCccCCCCCccEEeCCCCCCCChhh--h-hhcCCCCCCCEEecCCCCCCcccCCC
Q 014792 228 --SLPALEELHLMGNSISEITPV-SSPIVQGFDNLQLLNLEDNCIAEWSE--I-LKLCQIRSLEQLYLNKNNLNRIYYPN 301 (418)
Q Consensus 228 --~l~~L~~L~L~~n~l~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~--l-~~l~~l~~L~~L~l~~n~l~~~~~~~ 301 (418)
..++|++|+|++|.+++.... +...+..+++|++|+|++|.+.+... + ..+...++|+.|+|++|.|++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 357788888888887653211 01123556788888888888775431 1 34566778888888888887653221
Q ss_pred CCchhhhhccccccCccccCCCCCcEEEcc
Q 014792 302 NDTIHELVSAHESHEESYLPFQNLCCLLLG 331 (418)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 331 (418)
.. ..+..+++|++|+|+
T Consensus 231 l~-------------~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 231 LA-------------RAAREHPSLELLHLY 247 (372)
T ss_dssp HH-------------HHHHHCSSCCEEECT
T ss_pred HH-------------HHHHhCCCCCEEecc
Confidence 10 113355778888888
No 162
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=5.6e-13 Score=128.04 Aligned_cols=168 Identities=17% Similarity=0.088 Sum_probs=123.7
Q ss_pred cccccceecccCcCcCCCCC-chhh----hcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CC--
Q 014792 130 KFEELTSAALPYLGVSSPGA-NIGT----IVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GL-- 201 (418)
Q Consensus 130 ~l~~L~~L~L~~~~i~~~~~-~~~~----~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l-- 201 (418)
-++.|+.|+|++|.++.... .+.. .+++|++|+|++|.+.+. .+...+..+++|++|+|++|.++.... .+
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPA-GLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHH-HHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHH-HHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 35679999999999876544 2222 236899999999999862 234445567799999999999975432 22
Q ss_pred ---CCCCCccEEEecCCCCCHHH---HHHHHhcCCcccEEEccCCCCCccCC-CCCCccCCCCCccEEeCCCCCCCChhh
Q 014792 202 ---PQLKSIRILVLNCTGVNWMQ---VEILKHSLPALEELHLMGNSISEITP-VSSPIVQGFDNLQLLNLEDNCIAEWSE 274 (418)
Q Consensus 202 ---~~l~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~ 274 (418)
...++|++|+|++|.++... +...+..+++|++|+|++|.+.+... .+...+...++|+.|+|++|.|++...
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 35688999999999987644 34445678999999999999875321 001135567899999999999987542
Q ss_pred --h-hhcCCCCCCCEEecCCCCCCccc
Q 014792 275 --I-LKLCQIRSLEQLYLNKNNLNRIY 298 (418)
Q Consensus 275 --l-~~l~~l~~L~~L~l~~n~l~~~~ 298 (418)
+ ..+...++|++|+|++|.|++..
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 1 34556789999999999998763
No 163
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.23 E-value=2.4e-11 Score=103.40 Aligned_cols=104 Identities=21% Similarity=0.251 Sum_probs=53.1
Q ss_pred ccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEE
Q 014792 158 LKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELH 236 (418)
Q Consensus 158 L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 236 (418)
.+.+++++|.+..+ |..+ .++|++|+|++|++++.++ .+.. +++|++|+
T Consensus 11 ~~~l~~s~n~l~~i---p~~~--~~~l~~L~L~~N~i~~~~~~~~~~-------------------------l~~L~~L~ 60 (170)
T 3g39_A 11 GTTVDCSGKSLASV---PTGI--PTTTQVLYLYDNQITKLEPGVFDR-------------------------LTQLTRLD 60 (170)
T ss_dssp TTEEECTTSCCSSC---CSCC--CTTCSEEECCSSCCCCCCTTTTTT-------------------------CTTCSEEE
T ss_pred CCEEEeCCCCcCcc---CccC--CCCCcEEEcCCCcCCccChhhhcC-------------------------cccCCEEE
Confidence 45566666665542 2222 2456666666666655543 2444 44555555
Q ss_pred ccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCC
Q 014792 237 LMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLN 295 (418)
Q Consensus 237 L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~ 295 (418)
+++|+++.+++. .+..+++|++|+|++|.++++++ ..+..+++|+.|++++|+++
T Consensus 61 Ls~N~l~~l~~~---~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 61 LDNNQLTVLPAG---VFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred CCCCCcCccChh---hccCCCCCCEEECCCCccCEeCH-HHhcCCCCCCEEEeCCCCCC
Confidence 555555544433 23445555555555555555443 33455555555555555554
No 164
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.21 E-value=3.2e-11 Score=102.98 Aligned_cols=104 Identities=21% Similarity=0.237 Sum_probs=54.9
Q ss_pred cEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEc
Q 014792 159 KELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHL 237 (418)
Q Consensus 159 ~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 237 (418)
+.+++++|.+.. +|..+ .++|++|+|++|++++.++ .+.. +++|++|+|
T Consensus 15 ~~l~~~~n~l~~---iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~-------------------------l~~L~~L~L 64 (174)
T 2r9u_A 15 TLVNCQNIRLAS---VPAGI--PTDKQRLWLNNNQITKLEPGVFDH-------------------------LVNLQQLYF 64 (174)
T ss_dssp SEEECCSSCCSS---CCSCC--CTTCSEEECCSSCCCCCCTTTTTT-------------------------CTTCCEEEC
T ss_pred cEEEeCCCCCCc---cCCCc--CCCCcEEEeCCCCccccCHHHhcC-------------------------CcCCCEEEC
Confidence 556666666653 23222 2556666666666655543 3444 455555555
Q ss_pred cCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCc
Q 014792 238 MGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNR 296 (418)
Q Consensus 238 ~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~ 296 (418)
++|+++.+++. .+..+++|++|+|++|.+..++. ..+..+++|+.|++++|.+..
T Consensus 65 s~N~l~~i~~~---~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 65 NSNKLTAIPTG---VFDKLTQLTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CSSCCCCCCTT---TTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCBCT
T ss_pred CCCCCCccChh---HhCCcchhhEEECCCCccceeCH-HHhccccCCCEEEeCCCCccc
Confidence 55555554433 23455555566665555555443 335555566666666665543
No 165
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.04 E-value=8.8e-10 Score=106.77 Aligned_cols=168 Identities=10% Similarity=0.054 Sum_probs=96.3
Q ss_pred ccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CCCCCCCccEEE
Q 014792 133 ELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILV 211 (418)
Q Consensus 133 ~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~ 211 (418)
.|+.+.+.+ .+..++...+..|++|+.++|+.|.+..++ ...+. ..+|+.+.+..+ +..... .|..+.+|+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~--~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLP--ASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEEC--TTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEec--hhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEe
Confidence 477777765 555555544555677777777777666432 12333 467777777643 444433 466777777777
Q ss_pred ecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCC-----ChhhhhhcCCCCCCCE
Q 014792 212 LNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIA-----EWSEILKLCQIRSLEQ 286 (418)
Q Consensus 212 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~l~~l~~l~~L~~ 286 (418)
+..+ +.... ...+.. .+|+.+.+. +.++.+... .+..+++|+.+++.+|.+. .++. ..+..+++|+.
T Consensus 233 l~~~-l~~I~-~~aF~~-~~L~~i~lp-~~i~~I~~~---aF~~c~~L~~l~l~~~~~~~~~~~~I~~-~aF~~c~~L~~ 304 (401)
T 4fdw_A 233 IPEN-VSTIG-QEAFRE-SGITTVKLP-NGVTNIASR---AFYYCPELAEVTTYGSTFNDDPEAMIHP-YCLEGCPKLAR 304 (401)
T ss_dssp CCTT-CCEEC-TTTTTT-CCCSEEEEE-TTCCEECTT---TTTTCTTCCEEEEESSCCCCCTTCEECT-TTTTTCTTCCE
T ss_pred cCCC-ccCcc-cccccc-CCccEEEeC-CCccEEChh---HhhCCCCCCEEEeCCccccCCcccEECH-HHhhCCccCCe
Confidence 7654 22111 111122 567777773 445555443 4666777777777666554 2222 45666777777
Q ss_pred EecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEcc
Q 014792 287 LYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLG 331 (418)
Q Consensus 287 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 331 (418)
+.+. +.++.+.... |..|++|+.+.|.
T Consensus 305 l~l~-~~i~~I~~~a-----------------F~~c~~L~~l~lp 331 (401)
T 4fdw_A 305 FEIP-ESIRILGQGL-----------------LGGNRKVTQLTIP 331 (401)
T ss_dssp ECCC-TTCCEECTTT-----------------TTTCCSCCEEEEC
T ss_pred EEeC-CceEEEhhhh-----------------hcCCCCccEEEEC
Confidence 7776 3455553222 5666666766665
No 166
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.04 E-value=7.8e-10 Score=107.15 Aligned_cols=221 Identities=13% Similarity=0.076 Sum_probs=113.5
Q ss_pred HhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCCc
Q 014792 128 FSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKSI 207 (418)
Q Consensus 128 ~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L 207 (418)
|.++ +|+.+.+..+ +..++...+.. .+|+.+.+.. .+..+. ...|..+++|+.++++.|++.........+.+|
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~--~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L 205 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLK--EDIFYYCYNLKKADLSKTKITKLPASTFVYAGI 205 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEEC--SSTTTTCTTCCEEECTTSCCSEECTTTTTTCCC
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEeh--HHHhhCcccCCeeecCCCcceEechhhEeeccc
Confidence 3443 4666666554 55555433333 4577777664 344322 244566677777777766666555532235667
Q ss_pred cEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEE
Q 014792 208 RILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQL 287 (418)
Q Consensus 208 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L 287 (418)
+.+.+..+ +.. .....+..+++|+.+++..+ ++.+... .+.. .+|+.+.+. +.+..++. .++..+++|+.+
T Consensus 206 ~~l~lp~~-l~~-I~~~aF~~~~~L~~l~l~~~-l~~I~~~---aF~~-~~L~~i~lp-~~i~~I~~-~aF~~c~~L~~l 276 (401)
T 4fdw_A 206 EEVLLPVT-LKE-IGSQAFLKTSQLKTIEIPEN-VSTIGQE---AFRE-SGITTVKLP-NGVTNIAS-RAFYYCPELAEV 276 (401)
T ss_dssp SEEECCTT-CCE-ECTTTTTTCTTCCCEECCTT-CCEECTT---TTTT-CCCSEEEEE-TTCCEECT-TTTTTCTTCCEE
T ss_pred CEEEeCCc-hhe-ehhhHhhCCCCCCEEecCCC-ccCcccc---cccc-CCccEEEeC-CCccEECh-hHhhCCCCCCEE
Confidence 77766644 321 11223355666777777653 4444433 3444 566777663 33554443 456666777777
Q ss_pred ecCCCCCC-----cccCCCCCchhhhhccccccCccccCCCCCcEEEccCC-CCCCCCCccchhhhhhhhhhhccCCCCC
Q 014792 288 YLNKNNLN-----RIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNS-KKLPTSSHVSFVVYFLIFAFSLHASGNN 361 (418)
Q Consensus 288 ~l~~n~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~~i~~~~~~~~l~~~~~~l~~l~~~~~n 361 (418)
.+.+|.+. .+. . .+|..|++|+.++|.++ ..|+.... .. ...|+.+.+. +
T Consensus 277 ~l~~~~~~~~~~~~I~-~----------------~aF~~c~~L~~l~l~~~i~~I~~~aF-~~----c~~L~~l~lp--~ 332 (401)
T 4fdw_A 277 TTYGSTFNDDPEAMIH-P----------------YCLEGCPKLARFEIPESIRILGQGLL-GG----NRKVTQLTIP--A 332 (401)
T ss_dssp EEESSCCCCCTTCEEC-T----------------TTTTTCTTCCEECCCTTCCEECTTTT-TT----CCSCCEEEEC--T
T ss_pred EeCCccccCCcccEEC-H----------------HHhhCCccCCeEEeCCceEEEhhhhh-cC----CCCccEEEEC--c
Confidence 77666554 221 1 12566667777766633 22222210 00 0123334442 2
Q ss_pred CcCCCcccccccCCCCCceEEcCCCCCC
Q 014792 362 MIEDLASIDSLDSFPKLMDIRLSENPVS 389 (418)
Q Consensus 362 ~i~~~~~~~~l~~~~~L~~L~l~~N~l~ 389 (418)
.+..+.. .++..+ +|++|++.+|.+.
T Consensus 333 ~l~~I~~-~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 333 NVTQINF-SAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp TCCEECT-TSSSSS-CCCEEEECCSSCC
T ss_pred cccEEcH-HhCCCC-CCCEEEEcCCCCc
Confidence 2444432 355566 6666666666554
No 167
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.98 E-value=2e-09 Score=102.22 Aligned_cols=106 Identities=21% Similarity=0.269 Sum_probs=68.0
Q ss_pred EEEccCC-CCCccCCCCCCccCCCCCccEEeCCC-CCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhcc
Q 014792 234 ELHLMGN-SISEITPVSSPIVQGFDNLQLLNLED-NCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSA 311 (418)
Q Consensus 234 ~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 311 (418)
.++++++ .++.++. +..+++|+.|+|++ |.+..+++ ..+..+++|+.|+|++|+|+++.+..
T Consensus 12 ~v~~~~~n~l~~ip~-----l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~---------- 75 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-----LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRFVAPDA---------- 75 (347)
T ss_dssp CEECCSSCCCTTTTT-----SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSCCCEECTTG----------
T ss_pred EEEcCCCCCCCccCC-----CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCCccceeCHHH----------
Confidence 4566665 6666542 45566777777774 77776654 45667777777777777777763222
Q ss_pred ccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCC
Q 014792 312 HESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDP 391 (418)
Q Consensus 312 ~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~ 391 (418)
+..+++|+.|+|+ +|.+..+|. ..+..++ |+.|+|.+|++..+
T Consensus 76 -------~~~l~~L~~L~l~----------------------------~N~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 76 -------FHFTPRLSRLNLS----------------------------FNALESLSW-KTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp -------GGSCSCCCEEECC----------------------------SSCCSCCCS-TTTCSCC-CCEEECCSSCCCCC
T ss_pred -------hcCCcCCCEEeCC----------------------------CCccceeCH-HHcccCC-ceEEEeeCCCccCC
Confidence 5667777777777 777766663 2334443 77777777777765
Q ss_pred C
Q 014792 392 G 392 (418)
Q Consensus 392 ~ 392 (418)
+
T Consensus 119 c 119 (347)
T 2ifg_A 119 C 119 (347)
T ss_dssp G
T ss_pred C
Confidence 5
No 168
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.95 E-value=3.8e-10 Score=107.25 Aligned_cols=104 Identities=24% Similarity=0.221 Sum_probs=71.0
Q ss_pred EEEcCCC-CCCChHHHHHHhhcCCCCCEEEcCC-CCCCCccC-CCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEE
Q 014792 160 ELDLTGN-LLSDWKDIGAFGEQLPALAVLNLSN-NLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELH 236 (418)
Q Consensus 160 ~L~Ls~n-~l~~~~~l~~~~~~l~~L~~L~Ls~-n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 236 (418)
.++++++ .+.. +|. +..+++|++|+|++ |++++.++ .+..+++|++|+|++|.++. ..+..+..+++|++|+
T Consensus 12 ~v~~~~~n~l~~---ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALDS---LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCTT---TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEE
T ss_pred EEEcCCCCCCCc---cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEe
Confidence 4566666 6664 455 66777777777775 77776665 46777777777777777765 2344456778888888
Q ss_pred ccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCCh
Q 014792 237 LMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEW 272 (418)
Q Consensus 237 L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 272 (418)
|++|.++.+++. .+..++ |+.|+|.+|.+...
T Consensus 87 l~~N~l~~~~~~---~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 87 LSFNALESLSWK---TVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CCSSCCSCCCST---TTCSCC-CCEEECCSSCCCCC
T ss_pred CCCCccceeCHH---HcccCC-ceEEEeeCCCccCC
Confidence 888888877654 234444 88888888887743
No 169
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.92 E-value=4.2e-10 Score=102.11 Aligned_cols=112 Identities=24% Similarity=0.215 Sum_probs=82.9
Q ss_pred EeCCCCCCCChhhh-h-hcCCCCCCCEEecCCCCCCcccC-CCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCC
Q 014792 262 LNLEDNCIAEWSEI-L-KLCQIRSLEQLYLNKNNLNRIYY-PNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPT 338 (418)
Q Consensus 262 L~L~~n~l~~~~~l-~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~ 338 (418)
++++.|....++.+ . .-..+++|+.|+|++|.|+++.. +.. +..+++|+.|+|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~----------------~~~l~~L~~L~Ls------- 204 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSI----------------VQKAPNLKILNLS------- 204 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTH----------------HHHSTTCCEEECT-------
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhH----------------HhhCCCCCEEECC-------
Confidence 55666654444332 1 12468899999999999988732 121 4578999999999
Q ss_pred CCccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCCCCCCCC-cchhHHHHHHhhCCceeecCcccC
Q 014792 339 SSHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGR-GGISRFAIIARLGKIKILNGSEVN 417 (418)
Q Consensus 339 ~~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~-~~~~~~~~i~~l~~L~~Ln~s~i~ 417 (418)
+|.|.++..+..+..+ +|++|+|++||+..... ....+..+++.+|+|+.||+..|+
T Consensus 205 ---------------------~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~ 262 (267)
T 3rw6_A 205 ---------------------GNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELP 262 (267)
T ss_dssp ---------------------TSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCC
T ss_pred ---------------------CCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcCCC
Confidence 9999998765666666 99999999999985332 124556779999999999999997
Q ss_pred C
Q 014792 418 S 418 (418)
Q Consensus 418 ~ 418 (418)
+
T Consensus 263 p 263 (267)
T 3rw6_A 263 P 263 (267)
T ss_dssp C
T ss_pred C
Confidence 5
No 170
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=2.3e-09 Score=102.18 Aligned_cols=183 Identities=16% Similarity=0.149 Sum_probs=119.7
Q ss_pred ccccceecccCcCcCC-CC--------CchhhhcCCccEEEcCCCCCCC----h---HHHHHHhhcCCCCCEEEcCCCCC
Q 014792 131 FEELTSAALPYLGVSS-PG--------ANIGTIVTNLKELDLTGNLLSD----W---KDIGAFGEQLPALAVLNLSNNLM 194 (418)
Q Consensus 131 l~~L~~L~L~~~~i~~-~~--------~~~~~~~~~L~~L~Ls~n~l~~----~---~~l~~~~~~l~~L~~L~Ls~n~l 194 (418)
...++.|.+....... .. .++.. +++|+.|.+....... | ..+...+..+|+|+.|+|++|.-
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~-l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~ 184 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEK-FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN 184 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHH-HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhh-cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC
Confidence 3456677777555431 11 02333 4899999997654321 1 13567788899999999998842
Q ss_pred CCccCCCCCCCCccEEEecCCCCCHHHHHHHH-hcCCcccEEEccC--CC------CCccCCCCCCccCCCCCccEEeCC
Q 014792 195 SKEVTGLPQLKSIRILVLNCTGVNWMQVEILK-HSLPALEELHLMG--NS------ISEITPVSSPIVQGFDNLQLLNLE 265 (418)
Q Consensus 195 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~L~~--n~------l~~~~~~~~~~~~~l~~L~~L~L~ 265 (418)
.... .+ .+++|++|.+..|.+....+..+. ..+|+|++|+|+. |. +..+.+.. ....+++|++|+|.
T Consensus 185 l~l~-~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l--~~~~~p~Lr~L~L~ 260 (362)
T 2ra8_A 185 LSIG-KK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF--SKDRFPNLKWLGIV 260 (362)
T ss_dssp CBCC-SC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS--CTTTCTTCCEEEEE
T ss_pred ceec-cc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH--hcCCCCCcCEEeCC
Confidence 2222 33 378999999999999876666554 3799999999863 21 11111110 11357999999999
Q ss_pred CCCCCChhh--hhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEcc
Q 014792 266 DNCIAEWSE--ILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLG 331 (418)
Q Consensus 266 ~n~l~~~~~--l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 331 (418)
+|.+.+... +.....+++|++|+|+.|.|++...... ..++..+++|+.|+|+
T Consensus 261 ~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L-------------~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 261 DAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLL-------------LDHVDKIKHLKFINMK 315 (362)
T ss_dssp SCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHH-------------HTTHHHHTTCSEEECC
T ss_pred CCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHH-------------HhhcccCCcceEEECC
Confidence 998875322 1223468999999999999987532111 0113567999999999
No 171
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.84 E-value=5e-09 Score=90.17 Aligned_cols=121 Identities=15% Similarity=0.132 Sum_probs=81.4
Q ss_pred hhHHHHHhcccccceecccCc-CcCCCCC-----chhhhcCCccEEEcCCCCCCC--hHHHHHHhhcCCCCCEEEcCCCC
Q 014792 122 DKIQDKFSKFEELTSAALPYL-GVSSPGA-----NIGTIVTNLKELDLTGNLLSD--WKDIGAFGEQLPALAVLNLSNNL 193 (418)
Q Consensus 122 ~~l~~~~~~l~~L~~L~L~~~-~i~~~~~-----~~~~~~~~L~~L~Ls~n~l~~--~~~l~~~~~~l~~L~~L~Ls~n~ 193 (418)
+.+...+...+.|++|+|++| .+.+.+. .+.. .++|++|+|++|.+.+ ...+...+...++|++|+|++|.
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~-~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT-NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT-CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh-CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 345667788888899999888 7776433 2222 3778888888888875 33466677777888888888888
Q ss_pred CCCc-----cCCCCCCCCccEEEe--cCCCCCHHHH---HHHHhcCCcccEEEccCCCCC
Q 014792 194 MSKE-----VTGLPQLKSIRILVL--NCTGVNWMQV---EILKHSLPALEELHLMGNSIS 243 (418)
Q Consensus 194 l~~~-----~~~l~~l~~L~~L~L--~~n~l~~~~~---~~~~~~l~~L~~L~L~~n~l~ 243 (418)
|... ...+...++|++|+| ++|.+..... ...+...++|++|++++|.+.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 7753 223556667777777 6677775443 333344566677776666553
No 172
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=4e-08 Score=93.54 Aligned_cols=137 Identities=16% Similarity=0.216 Sum_probs=59.3
Q ss_pred cCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC-CC--CCCCCccEEEecCC--CC----CHHHHHHH
Q 014792 155 VTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT-GL--PQLKSIRILVLNCT--GV----NWMQVEIL 225 (418)
Q Consensus 155 ~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-~l--~~l~~L~~L~L~~n--~l----~~~~~~~~ 225 (418)
+|+|+.|+|++|.-.. ++. + .+++|++|++..+.+..... .+ ..+++|++|+|+.+ .. ....+...
T Consensus 171 ~P~L~~L~L~g~~~l~---l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLS---IGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp CTTCCEEEEECCBTCB---CCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred CCCCcEEEEeCCCCce---ecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 3566666665552111 111 1 25566666666555442211 11 24556666655321 00 00011111
Q ss_pred H--hcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhh--h-hhcCCCCCCCEEecCCCCCCc
Q 014792 226 K--HSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSE--I-LKLCQIRSLEQLYLNKNNLNR 296 (418)
Q Consensus 226 ~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--l-~~l~~l~~L~~L~l~~n~l~~ 296 (418)
+ ..+|+|++|++.+|.+.+...........+++|++|+|+.|.+.+... + ..+..+++|+.|++++|.|++
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 1 235566666666655543110000001234566666666666554321 1 122345566666666665554
No 173
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=3.8e-08 Score=84.60 Aligned_cols=123 Identities=16% Similarity=0.062 Sum_probs=64.8
Q ss_pred HHHhhcCCCCCEEEcCCC-CCCCc-----cCCCCCCCCccEEEecCCCCCHHHH---HHHHhcCCcccEEEccCCCCCcc
Q 014792 175 GAFGEQLPALAVLNLSNN-LMSKE-----VTGLPQLKSIRILVLNCTGVNWMQV---EILKHSLPALEELHLMGNSISEI 245 (418)
Q Consensus 175 ~~~~~~l~~L~~L~Ls~n-~l~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~L~~n~l~~~ 245 (418)
...+...++|++|+|++| .+... ...+...++|++|+|++|.+..... ...+...++|++|+|++|.+.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 334444444444444444 44321 1112334455555555555543332 33334456677777777766542
Q ss_pred CC-CCCCccCCCCCccEEeC--CCCCCCChhh--h-hhcCCCCCCCEEecCCCCCCcc
Q 014792 246 TP-VSSPIVQGFDNLQLLNL--EDNCIAEWSE--I-LKLCQIRSLEQLYLNKNNLNRI 297 (418)
Q Consensus 246 ~~-~~~~~~~~l~~L~~L~L--~~n~l~~~~~--l-~~l~~l~~L~~L~l~~n~l~~~ 297 (418)
.. .+...+...++|++|+| ++|.+..... + ..+...++|++|++++|.+...
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 10 00113455567888888 6777775432 1 3455567888888888877543
No 174
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.58 E-value=1.8e-08 Score=91.34 Aligned_cols=82 Identities=24% Similarity=0.359 Sum_probs=54.0
Q ss_pred hcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccC--CCCCCCCccEEEecCCCCCH------HHHHHH
Q 014792 154 IVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVT--GLPQLKSIRILVLNCTGVNW------MQVEIL 225 (418)
Q Consensus 154 ~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~--~l~~l~~L~~L~L~~n~l~~------~~~~~~ 225 (418)
.+++|+.|+|++|.++++..++..+..+++|+.|+|++|++++... .+..+ +|++|+|++|.+.. ......
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 3577777777777777766666667777777777777777775421 23333 77777777777653 122345
Q ss_pred HhcCCcccEEE
Q 014792 226 KHSLPALEELH 236 (418)
Q Consensus 226 ~~~l~~L~~L~ 236 (418)
+..+|+|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56677777765
No 175
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.20 E-value=4.4e-07 Score=76.52 Aligned_cols=107 Identities=12% Similarity=0.087 Sum_probs=72.1
Q ss_pred CCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhh---hhhhhhhccCCC
Q 014792 283 SLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVY---FLIFAFSLHASG 359 (418)
Q Consensus 283 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~---~~~~l~~l~~~~ 359 (418)
.|+.|+++++.|++..... +..+++|+.|+|++|..|... .+..+.. ...+|++|++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~-----------------L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~ 123 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDH-----------------MEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIIS 123 (176)
T ss_dssp CEEEEEEESCCCCGGGGGG-----------------GTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEES
T ss_pred eEeEEeCcCCCccHHHHHH-----------------hcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCC
Confidence 5788888888777654322 467888999999888666443 1222222 234688888887
Q ss_pred CCCcCCCcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCcee
Q 014792 360 NNMIEDLASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKI 410 (418)
Q Consensus 360 ~n~i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ 410 (418)
+..|++- .+..+..+++|++|+|++|+-.++. .......-+.+|++++
T Consensus 124 C~~ITD~-Gl~~L~~~~~L~~L~L~~c~~Itd~--gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 124 CGNVTDK-GIIALHHFRNLKYLFLSDLPGVKEK--EKIVQAFKTSLPSLEL 171 (176)
T ss_dssp CTTCCHH-HHHHGGGCTTCCEEEEESCTTCCCH--HHHHHHHHHHCTTCEE
T ss_pred CCcCCHH-HHHHHhcCCCCCEEECCCCCCCCch--HHHHHHHHHHCCCcEE
Confidence 7788775 3457888999999999999855432 1233344567888764
No 176
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.18 E-value=1.5e-06 Score=83.75 Aligned_cols=23 Identities=9% Similarity=0.358 Sum_probs=15.0
Q ss_pred cCCCcccccccCCCCCceEEcCCC
Q 014792 363 IEDLASIDSLDSFPKLMDIRLSEN 386 (418)
Q Consensus 363 i~~~~~~~~l~~~~~L~~L~l~~N 386 (418)
+..+.. .++..|++|+++++..+
T Consensus 354 l~~I~~-~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 354 LRKIGA-NAFQGCINLKKVELPKR 376 (394)
T ss_dssp CCEECT-TTBTTCTTCCEEEEEGG
T ss_pred ccEehH-HHhhCCCCCCEEEECCC
Confidence 445543 46777888888887544
No 177
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.12 E-value=4.6e-06 Score=80.40 Aligned_cols=218 Identities=14% Similarity=0.121 Sum_probs=124.4
Q ss_pred HHHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCC
Q 014792 126 DKFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLK 205 (418)
Q Consensus 126 ~~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~ 205 (418)
.++.++++|+.+.+.++ +..++...+..|.+|+.+.+..+ +..+. ...+..++.|+.+.+..+... .........
T Consensus 156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~--~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~ 230 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIR--DYCFAECILLENMEFPNSLYY-LGDFALSKT 230 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEEC--TTTTTTCTTCCBCCCCTTCCE-ECTTTTTTC
T ss_pred hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeC--chhhccccccceeecCCCceE-eehhhcccC
Confidence 35788899999998754 34444455555688999988776 33322 245567778887777655332 222333456
Q ss_pred CccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCC
Q 014792 206 SIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLE 285 (418)
Q Consensus 206 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~ 285 (418)
.|+.+.+....-. .....+..+..|+.+.+..+.. .+... .+..+..++.+....+.+.. ..+..+.+|+
T Consensus 231 ~l~~i~ip~~~~~--i~~~~f~~~~~l~~~~~~~~~~-~i~~~---~F~~~~~l~~~~~~~~~i~~----~~F~~~~~L~ 300 (394)
T 4fs7_A 231 GVKNIIIPDSFTE--LGKSVFYGCTDLESISIQNNKL-RIGGS---LFYNCSGLKKVIYGSVIVPE----KTFYGCSSLT 300 (394)
T ss_dssp CCCEEEECTTCCE--ECSSTTTTCSSCCEEEECCTTC-EECSC---TTTTCTTCCEEEECSSEECT----TTTTTCTTCC
T ss_pred CCceEEECCCcee--cccccccccccceeEEcCCCcc-eeecc---ccccccccceeccCceeecc----cccccccccc
Confidence 7777777544211 0112235667777777766533 23322 35666677777666554332 3456677777
Q ss_pred EEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCCcCC
Q 014792 286 QLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNMIED 365 (418)
Q Consensus 286 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~i~~ 365 (418)
.+.+..+ ++.+... ++..|.+|+.+++. .+ ++.
T Consensus 301 ~i~l~~~-i~~I~~~-----------------aF~~c~~L~~i~lp----------------------------~~-v~~ 333 (394)
T 4fs7_A 301 EVKLLDS-VKFIGEE-----------------AFESCTSLVSIDLP----------------------------YL-VEE 333 (394)
T ss_dssp EEEECTT-CCEECTT-----------------TTTTCTTCCEECCC----------------------------TT-CCE
T ss_pred ccccccc-cceechh-----------------hhcCCCCCCEEEeC----------------------------Cc-ccE
Confidence 7777554 5444211 15667777777775 32 334
Q ss_pred CcccccccCCCCCceEEcCCCCCCCCCCcchhHHHHHHhhCCceeecC
Q 014792 366 LASIDSLDSFPKLMDIRLSENPVSDPGRGGISRFAIIARLGKIKILNG 413 (418)
Q Consensus 366 ~~~~~~l~~~~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~Ln~ 413 (418)
+.. .++..|++|+.+.+..+ +.... ..+...+++|+.+++
T Consensus 334 I~~-~aF~~c~~L~~i~lp~~-l~~I~------~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 334 IGK-RSFRGCTSLSNINFPLS-LRKIG------ANAFQGCINLKKVEL 373 (394)
T ss_dssp ECT-TTTTTCTTCCEECCCTT-CCEEC------TTTBTTCTTCCEEEE
T ss_pred EhH-HhccCCCCCCEEEECcc-ccEeh------HHHhhCCCCCCEEEE
Confidence 432 35667777777777655 43211 112345666666654
No 178
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.96 E-value=1.4e-05 Score=68.67 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=62.9
Q ss_pred HHHHHhcccccceecccCc-CcCCCCC-----chhhhcCCccEEEcCCCCCCCh--HHHHHHhhcCCCCCEEEcCCCCCC
Q 014792 124 IQDKFSKFEELTSAALPYL-GVSSPGA-----NIGTIVTNLKELDLTGNLLSDW--KDIGAFGEQLPALAVLNLSNNLMS 195 (418)
Q Consensus 124 l~~~~~~l~~L~~L~L~~~-~i~~~~~-----~~~~~~~~L~~L~Ls~n~l~~~--~~l~~~~~~l~~L~~L~Ls~n~l~ 195 (418)
+...+.+-+.|++|+|+++ .|.+.+. .+... +.|+.|+|++|.|.+. ..+.+.+...+.|++|+|++|.|.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N-~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhC-CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 4445556667777777764 6654332 22222 5677777777777642 345566666667777777777765
Q ss_pred Ccc-----CCCCCCCCccEEEecCC---CCCHH---HHHHHHhcCCcccEEEccCC
Q 014792 196 KEV-----TGLPQLKSIRILVLNCT---GVNWM---QVEILKHSLPALEELHLMGN 240 (418)
Q Consensus 196 ~~~-----~~l~~l~~L~~L~L~~n---~l~~~---~~~~~~~~l~~L~~L~L~~n 240 (418)
... ..+..-+.|++|+|+++ .+... .+...+..-+.|++|+++.|
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 321 12334455666666543 33322 12333344455555555444
No 179
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.95 E-value=4e-06 Score=70.65 Aligned_cols=82 Identities=13% Similarity=0.201 Sum_probs=38.4
Q ss_pred CccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCC-CCccCCCCCCccCCC----CCccEEeCCCCC-CCChhhhhhcC
Q 014792 206 SIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNS-ISEITPVSSPIVQGF----DNLQLLNLEDNC-IAEWSEILKLC 279 (418)
Q Consensus 206 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~l~~l~ 279 (418)
.|++|++++|.++...+..+ ..+++|++|+|++|. +++..-. .+..+ ++|++|+|++|. +++.. +..+.
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~---~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~ 136 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLE---RLSQLENLQKSMLEMEIISCGNVTDKG-IIALH 136 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHH---HHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGG
T ss_pred eEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHH---HHHhcccccCCCCEEEcCCCCcCCHHH-HHHHh
Confidence 46666666666655444333 455555555555553 3332100 12221 245555555543 33322 23444
Q ss_pred CCCCCCEEecCCC
Q 014792 280 QIRSLEQLYLNKN 292 (418)
Q Consensus 280 ~l~~L~~L~l~~n 292 (418)
++++|++|++++|
T Consensus 137 ~~~~L~~L~L~~c 149 (176)
T 3e4g_A 137 HFRNLKYLFLSDL 149 (176)
T ss_dssp GCTTCCEEEEESC
T ss_pred cCCCCCEEECCCC
Confidence 4555555555554
No 180
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.92 E-value=3.2e-05 Score=74.39 Aligned_cols=221 Identities=9% Similarity=0.056 Sum_probs=107.6
Q ss_pred HHhcccccceecccCcCcCCCCCchhhhcCCccEEEcCCCCCCChHHHHHHhhcCCCCCEEEcCCCCCCCccCCCCCCCC
Q 014792 127 KFSKFEELTSAALPYLGVSSPGANIGTIVTNLKELDLTGNLLSDWKDIGAFGEQLPALAVLNLSNNLMSKEVTGLPQLKS 206 (418)
Q Consensus 127 ~~~~l~~L~~L~L~~~~i~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~ 206 (418)
+|..+..|+.+.+..+ +..++...+..|.+|+.+.+..+. ..+. ...+..+..|+.+.+..+ +............
T Consensus 109 aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~--~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~ 183 (394)
T 4gt6_A 109 AFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVA--DGMFSYCYSLHTVTLPDS-VTAIEERAFTGTA 183 (394)
T ss_dssp TTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEEC--TTTTTTCTTCCEEECCTT-CCEECTTTTTTCC
T ss_pred hchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeec--ccceecccccccccccce-eeEeccccccccc
Confidence 4566666776666543 444444444456778888876543 2211 234566777777777654 3322222112345
Q ss_pred ccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCC------------------------------------CCccCCCCC
Q 014792 207 IRILVLNCTGVNWMQVEILKHSLPALEELHLMGNS------------------------------------ISEITPVSS 250 (418)
Q Consensus 207 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~------------------------------------l~~~~~~~~ 250 (418)
|+.+.+..+.... ....+..+.+++......+. ++.+..
T Consensus 184 l~~i~ip~~~~~i--~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~--- 258 (394)
T 4gt6_A 184 LTQIHIPAKVTRI--GTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIET--- 258 (394)
T ss_dssp CSEEEECTTCCEE--CTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECT---
T ss_pred eeEEEECCccccc--ccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEccc---
Confidence 6666654332110 01111233333333222111 111111
Q ss_pred CccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEc
Q 014792 251 PIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLL 330 (418)
Q Consensus 251 ~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 330 (418)
..+..+..|+.+.+..+. ..+.. .++..+++|+.+.+. +.++.+.... |..|.+|+.++|
T Consensus 259 ~aF~~c~~L~~i~lp~~~-~~I~~-~aF~~c~~L~~i~l~-~~i~~I~~~a-----------------F~~c~~L~~i~l 318 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSV-VSIGT-GAFMNCPALQDIEFS-SRITELPESV-----------------FAGCISLKSIDI 318 (394)
T ss_dssp TTTTTCSSCCEEECCTTC-CEECT-TTTTTCTTCCEEECC-TTCCEECTTT-----------------TTTCTTCCEEEC
T ss_pred ceeeecccccEEeccccc-ceecC-cccccccccccccCC-CcccccCcee-----------------ecCCCCcCEEEe
Confidence 245566777777775542 22222 456667777777774 3455442111 555666666666
Q ss_pred cCC-CCCCCC--CccchhhhhhhhhhhccCCCCCCcCCCcccccccCCCCCceEEcCCCC
Q 014792 331 GNS-KKLPTS--SHVSFVVYFLIFAFSLHASGNNMIEDLASIDSLDSFPKLMDIRLSENP 387 (418)
Q Consensus 331 ~~n-~~i~~~--~~~~~l~~~~~~l~~l~~~~~n~i~~~~~~~~l~~~~~L~~L~l~~N~ 387 (418)
..+ ..|... ..+ .+|+++.+ .+.++.+.. .++..|++|+.+++.++.
T Consensus 319 p~~v~~I~~~aF~~C-------~~L~~i~i--p~sv~~I~~-~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 319 PEGITQILDDAFAGC-------EQLERIAI--PSSVTKIPE-SAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CTTCCEECTTTTTTC-------TTCCEEEE--CTTCCBCCG-GGGTTCTTCCEEEESSCH
T ss_pred CCcccEehHhHhhCC-------CCCCEEEE--CcccCEEhH-hHhhCCCCCCEEEECCce
Confidence 533 222211 001 12233333 223555543 478888999999888764
No 181
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.69 E-value=2.2e-05 Score=67.36 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=84.0
Q ss_pred HHHHHHhcCCcccEEEccCC-CCCccC-CCCCCccCCCCCccEEeCCCCCCCChhhh---hhcCCCCCCCEEecCCCCCC
Q 014792 221 QVEILKHSLPALEELHLMGN-SISEIT-PVSSPIVQGFDNLQLLNLEDNCIAEWSEI---LKLCQIRSLEQLYLNKNNLN 295 (418)
Q Consensus 221 ~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~l---~~l~~l~~L~~L~l~~n~l~ 295 (418)
.+...+..-+.|++|+|++| .+.+.. ..+...+...+.|+.|+|++|.|.+.... ..+..-+.|++|+|+.|.|+
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 45566677788999999885 765421 00112355668899999999998764421 34556788999999999998
Q ss_pred cccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCC---CcCCCc---cc
Q 014792 296 RIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNN---MIEDLA---SI 369 (418)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n---~i~~~~---~~ 369 (418)
+....... +++...+.|+.|+|+ +| .+++-. ..
T Consensus 112 ~~Ga~ala-------------~aL~~N~tL~~L~L~----------------------------n~~~~~ig~~g~~~ia 150 (197)
T 1pgv_A 112 PELLARLL-------------RSTLVTQSIVEFKAD----------------------------NQRQSVLGNQVEMDMM 150 (197)
T ss_dssp HHHHHHHH-------------HHTTTTCCCSEEECC----------------------------CCSSCCCCHHHHHHHH
T ss_pred HHHHHHHH-------------HHHhhCCceeEEECC----------------------------CCcCcCcCHHHHHHHH
Confidence 76433221 224455679999998 43 443321 11
Q ss_pred ccccCCCCCceEEcCCCCCC
Q 014792 370 DSLDSFPKLMDIRLSENPVS 389 (418)
Q Consensus 370 ~~l~~~~~L~~L~l~~N~l~ 389 (418)
+.+...++|.+|+++.|.+.
T Consensus 151 ~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 151 MAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHCSSCCEEECCCCCHH
T ss_pred HHHHhCCCcCeEeccCCCcc
Confidence 45677889999999877543
No 182
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.55 E-value=0.00016 Score=69.52 Aligned_cols=18 Identities=6% Similarity=0.263 Sum_probs=5.8
Q ss_pred cccCCCCCceEEcCCCCC
Q 014792 371 SLDSFPKLMDIRLSENPV 388 (418)
Q Consensus 371 ~l~~~~~L~~L~l~~N~l 388 (418)
.+..+..|+.+.+..+.+
T Consensus 373 ~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 373 AISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCBCCCCC----------
T ss_pred hhhccCCCCEEEeCCCCE
Confidence 566778888888876654
No 183
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.12 E-value=0.0018 Score=61.51 Aligned_cols=105 Identities=13% Similarity=0.183 Sum_probs=60.2
Q ss_pred CCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCC
Q 014792 202 PQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQI 281 (418)
Q Consensus 202 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l 281 (418)
..+..|+.+.+..+--. .....+..+..|+.+.+..+ ++.+... .+..+.+|+.+.+..+ +...+. ..+..+
T Consensus 214 ~~~~~l~~i~~~~~~~~--i~~~~f~~~~~L~~i~lp~~-v~~I~~~---aF~~~~~l~~i~l~~~-i~~i~~-~aF~~c 285 (379)
T 4h09_A 214 SYGKNLKKITITSGVTT--LGDGAFYGMKALDEIAIPKN-VTSIGSF---LLQNCTALKTLNFYAK-VKTVPY-LLCSGC 285 (379)
T ss_dssp TTCSSCSEEECCTTCCE--ECTTTTTTCSSCCEEEECTT-CCEECTT---TTTTCTTCCEEEECCC-CSEECT-TTTTTC
T ss_pred ccccccceeeeccceeE--EccccccCCccceEEEcCCC-ccEeCcc---ccceeehhcccccccc-ceeccc-cccccc
Confidence 34455555555443211 11122345666777777554 4444433 4566677777777543 444333 456677
Q ss_pred CCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEcc
Q 014792 282 RSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLG 331 (418)
Q Consensus 282 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 331 (418)
++|+.+.+.++.++.+.... |..|.+|+.+.|.
T Consensus 286 ~~L~~i~l~~~~i~~I~~~a-----------------F~~c~~L~~i~lp 318 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEPRV-----------------FMDCVKLSSVTLP 318 (379)
T ss_dssp TTCCEEEECCTTCCEECTTT-----------------TTTCTTCCEEECC
T ss_pred cccccccccccccceehhhh-----------------hcCCCCCCEEEcC
Confidence 77887777777777663222 6777778877776
No 184
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.81 E-value=0.0037 Score=59.37 Aligned_cols=128 Identities=13% Similarity=0.162 Sum_probs=89.9
Q ss_pred hhcCCCCCEEEcCCCCCCCccC-CCCCCCCccEEEecCCCCCHHHHHHHHhcCCcccEEEccCCCCCccCCCCCCccCCC
Q 014792 178 GEQLPALAVLNLSNNLMSKEVT-GLPQLKSIRILVLNCTGVNWMQVEILKHSLPALEELHLMGNSISEITPVSSPIVQGF 256 (418)
Q Consensus 178 ~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l 256 (418)
+....+|+.+.+..+ +..... .+..+..|+.+.+..+ ++. .-...+..+.+|+.+.+..+ +..+... .+..+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~-I~~~aF~~~~~l~~i~l~~~-i~~i~~~---aF~~c 285 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTS-IGSFLLQNCTALKTLNFYAK-VKTVPYL---LCSGC 285 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCE-ECTTTTTTCTTCCEEEECCC-CSEECTT---TTTTC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccE-eCccccceeehhcccccccc-ceecccc---ccccc
Confidence 344566777776544 332322 4678889999998765 221 11223467888999998654 5665544 57888
Q ss_pred CCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCCcccCCCCCchhhhhccccccCccccCCCCCcEEEcc
Q 014792 257 DNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLNRIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLG 331 (418)
Q Consensus 257 ~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 331 (418)
.+|+.+.+.++.++.++. .++..+.+|+.+.+..+ ++.+... +|..|.+|+.+.+.
T Consensus 286 ~~L~~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~-l~~I~~~-----------------aF~~C~~L~~i~ip 341 (379)
T 4h09_A 286 SNLTKVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA-LKTIQVY-----------------AFKNCKALSTISYP 341 (379)
T ss_dssp TTCCEEEECCTTCCEECT-TTTTTCTTCCEEECCTT-CCEECTT-----------------TTTTCTTCCCCCCC
T ss_pred cccccccccccccceehh-hhhcCCCCCCEEEcCcc-ccEEHHH-----------------HhhCCCCCCEEEEC
Confidence 999999999888887765 67889999999999754 6666322 27888999998886
No 185
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.74 E-value=0.003 Score=50.29 Aligned_cols=59 Identities=22% Similarity=0.266 Sum_probs=48.4
Q ss_pred CEEecCCCCCC--cccCCCCCchhhhhccccccCccccCCCCCcEEEccCCCCCCCCCccchhhhhhhhhhhccCCCCCC
Q 014792 285 EQLYLNKNNLN--RIYYPNNDTIHELVSAHESHEESYLPFQNLCCLLLGNSKKLPTSSHVSFVVYFLIFAFSLHASGNNM 362 (418)
Q Consensus 285 ~~L~l~~n~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~i~~~~~~~~l~~~~~~l~~l~~~~~n~ 362 (418)
..++.+++.++ .+ |.. -.++|+.|+|+ +|.
T Consensus 11 ~~v~Cs~~~L~~~~v--P~~------------------lp~~l~~L~Ls----------------------------~N~ 42 (130)
T 3rfe_A 11 TLVDCGRRGLTWASL--PTA------------------FPVDTTELVLT----------------------------GNN 42 (130)
T ss_dssp TEEECCSSCCCTTTS--CSC------------------CCTTCSEEECT----------------------------TSC
T ss_pred CEEEeCCCCCccccC--CCC------------------CCcCCCEEECC----------------------------CCc
Confidence 47888888888 66 432 12479999999 999
Q ss_pred cCCCcccccccCCCCCceEEcCCCCCCCCC
Q 014792 363 IEDLASIDSLDSFPKLMDIRLSENPVSDPG 392 (418)
Q Consensus 363 i~~~~~~~~l~~~~~L~~L~l~~N~l~~~~ 392 (418)
|..++. ..+..+++|+.|+|++||+..++
T Consensus 43 l~~l~~-~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 43 LTALPP-GLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp CSSCCT-TTGGGCTTCCEEECCSSCCBCSG
T ss_pred CCccCh-hhhhhccccCEEEecCCCeeccC
Confidence 999986 57889999999999999999877
No 186
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.60 E-value=0.0037 Score=49.75 Aligned_cols=56 Identities=13% Similarity=0.033 Sum_probs=37.4
Q ss_pred cEEEccCCCCC--ccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCCCCC
Q 014792 233 EELHLMGNSIS--EITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKNNLN 295 (418)
Q Consensus 233 ~~L~L~~n~l~--~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n~l~ 295 (418)
..++.+++.++ .++..+ ..+|+.|+|++|.|+.++. ..+..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l------p~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF------PVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC------CTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC------CcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCee
Confidence 35667777776 555331 2457777777777777665 55667777777777777654
No 187
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=60.92 E-value=9.5 Score=27.25 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=28.0
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEeecCCCCceEEEEEEeCCCCCCCCEECCEEeeecCCC
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTWLGVDWDYGNGKHDGSINGVRYFQAKSQ 67 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w~gve~d~~~gk~~g~~~g~~yf~~~~~ 67 (418)
..-.||.||....... |||+|.+. .|.-++.+ =.+..+|.|.+.+.
T Consensus 8 ~~~yIGs~iSLISk~d----IRYeGiL~-------~In~~~sT----i~L~nVrsfGTEgR 53 (88)
T 2vxe_A 8 GLPELGSKISLISKAD----IRYEGRLY-------TVDPQECT----IALSSVRSFGTEDR 53 (88)
T ss_dssp SSCCTTCEEEEEETTT----EEEEEEEE-------EEETTTTE----EEEEEEEECCCTTT
T ss_pred CCcccCCeEEEEECCC----ceEEEEEe-------eecCcccE----EEEEeeeEecCcCC
Confidence 3457999998876544 99999763 22211111 02346778877653
No 188
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=53.95 E-value=7.3 Score=28.25 Aligned_cols=23 Identities=17% Similarity=0.427 Sum_probs=17.2
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEeec
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVGEV 33 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g~~ 33 (418)
..-.||.+|....... |||+|.+
T Consensus 14 ~~~~IGs~ISLISk~d----IRYeGiL 36 (95)
T 2fb7_A 14 GTPYIGSKISLISKAE----IRYEGIL 36 (95)
T ss_dssp --CCSSEEEEEEETTT----EEEEEEE
T ss_pred cCcccCCeEEEEECCC----ceEEEEE
Confidence 4568999998876544 9999976
No 189
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=38.22 E-value=11 Score=29.02 Aligned_cols=34 Identities=18% Similarity=0.282 Sum_probs=22.9
Q ss_pred CCCCCCCCEEEeCCCCceeeEEEEEeecCCCCceE
Q 014792 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTW 40 (418)
Q Consensus 6 ~~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w 40 (418)
++.|+|||||++.+.. -.|-+|--|.+-|..|..
T Consensus 34 ~prF~vGDrVrvr~~~-p~gHtRlP~YvRGk~G~I 67 (126)
T 2zzd_A 34 KSKFNVGDRVRIKDLP-DLFYTRTMTYTRGATGTI 67 (126)
T ss_dssp SCSSCTTCEEEECCCC-CSSCCSSCGGGTTCEEEE
T ss_pred CCccCCCCEEEEccCC-CCCceeccHHhCCCEEEE
Confidence 4789999999997643 345566666665555544
No 190
>3dkm_A E3 ubiquitin-protein ligase hectd1; UBL conjugation, UBL conjugation pathway, structural genomics consortium, SGC;, ANK repeat, NPPSFA; 1.60A {Homo sapiens} SCOP: b.34.19.1
Probab=34.77 E-value=66 Score=22.98 Aligned_cols=34 Identities=35% Similarity=0.671 Sum_probs=22.6
Q ss_pred CCCCCEEEeC---------CCCceeeEEEEEeecCCCCceEEEEEEeC
Q 014792 9 YKLGQRVHSA---------NDARRIGTVKYVGEVQGYSGTWLGVDWDY 47 (418)
Q Consensus 9 ~~~g~rv~~~---------~~~~~~gtvr~~g~~~~~~~~w~gve~d~ 47 (418)
++||.||.=. +++.+.|||. +. ..+.|+.|.||+
T Consensus 22 i~vG~RVVRGpDWkWgdQDGg~g~~GtV~--~~---~~~gwv~V~Wd~ 64 (89)
T 3dkm_A 22 MVPGARVTRGLDWKWRDQDGSPQGEGTVT--GE---LHNGWIDVTWDA 64 (89)
T ss_dssp CSTTCEEEECTTCCCTTTTSSTTCCEEEC--SC---CBTTEEEEEETT
T ss_pred cccCcEEEeCCCCcccccCCCCCcccEEe--Ee---cCCCeEEEEeCC
Confidence 6799998753 3333567763 22 247899999984
No 191
>2dk3_A E3 ubiquitin-protein ligase hectd1; MIB-HERC2 domain, HECT domain containing protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.19.1
Probab=28.44 E-value=73 Score=22.57 Aligned_cols=37 Identities=35% Similarity=0.653 Sum_probs=24.7
Q ss_pred CCCCCCCEEEeC---------CCCceeeEEEEEeecCCCCceEEEEEEeCC
Q 014792 7 ESYKLGQRVHSA---------NDARRIGTVKYVGEVQGYSGTWLGVDWDYG 48 (418)
Q Consensus 7 ~~~~~g~rv~~~---------~~~~~~gtvr~~g~~~~~~~~w~gve~d~~ 48 (418)
....||.||.=. +++.+.|||. +. ..+.|+-|.||+.
T Consensus 14 ~~i~vG~rVVRG~DWkWgdQDGG~G~~GtV~--~~---~~~~wv~V~Wd~G 59 (86)
T 2dk3_A 14 KYMVPGARVIRGLDWKWRDQDGSPQGEGTVT--GE---LHNGWIDVTWDAG 59 (86)
T ss_dssp GTCCTTSEEEECTTCCSCCTTCSSCCCEEBC--SC---CCSSEEEEEETTT
T ss_pred hccccCCEEEeCCCCcccccCCCCCcceEEE--EE---cCCCEEEEEeCCC
Confidence 457899998752 3344667774 22 3488999999844
No 192
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=27.86 E-value=69 Score=23.29 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=32.0
Q ss_pred CCCccCCCCCCccCCCCCccEEeCCCCCCCChhhhhhcCCCCCCCEEecCCC
Q 014792 241 SISEITPVSSPIVQGFDNLQLLNLEDNCIAEWSEILKLCQIRSLEQLYLNKN 292 (418)
Q Consensus 241 ~l~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~l~~L~~L~l~~n 292 (418)
.++.+... .+..+.+|+.+.+-.+ ++.+.. .++..+.+|+.+.+...
T Consensus 7 ~vt~I~~~---aF~~c~~L~~i~iP~~-v~~Ig~-~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKS---LFAGNTVIREITVQPN-IGLLYD-GMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSC---TTTTCTTCCCEEECTT-SSCCCT-TSSTTCTTCCCEEECCS
T ss_pred ccCEecHH---HhcCCCCCcEEEcCCc-hheEcH-HHHhccCCccEEEEcCC
Confidence 34555443 5778888888888765 444443 56888888888888764
No 193
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=27.32 E-value=23 Score=30.34 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=23.0
Q ss_pred CCCCCCCCEEEeCCCCceeeEEEEEeecCCCCceE
Q 014792 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTW 40 (418)
Q Consensus 6 ~~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w 40 (418)
++.|+|||||++.+.. -.|-+|--|.+-|..|..
T Consensus 136 ~~~F~vGd~Vrv~~~~-~~~HtR~P~Y~Rgk~G~I 169 (226)
T 1ugp_B 136 PPKFKEGDVVRFSTAS-PKGHARRARYVRGKTGTV 169 (226)
T ss_dssp CCSCCTTCEEEECCCC-CSSCCCCCGGGTTCEEEE
T ss_pred CCcCCCCCeEEEccCC-CCCcccccHHhCCCeEEE
Confidence 4789999999997643 345566666665555544
No 194
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=26.34 E-value=24 Score=30.35 Aligned_cols=35 Identities=17% Similarity=0.345 Sum_probs=21.1
Q ss_pred CCCCCCCCCEEEeCCCCceeeEEEEEeecCCCCceE
Q 014792 5 NPESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTW 40 (418)
Q Consensus 5 ~~~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w 40 (418)
.++.|+|||||++.+.. -.|-+|--|.+-|..|..
T Consensus 138 ~~~~F~vGd~Vrv~~~~-~~~HtR~P~Y~RG~~G~I 172 (229)
T 3hht_B 138 ASPRFKVGERIKTKNIH-PTGHTRFPRYARDKYGVI 172 (229)
T ss_dssp SCCSCCTTCEEEECCCC-CSSCCSCCGGGTTCEEEE
T ss_pred CCCCCCCCCEEEECCCC-CCCcccCcHHHCCCeeEE
Confidence 35789999999996542 234444444444444433
No 195
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=26.17 E-value=24 Score=30.12 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=20.9
Q ss_pred CCCCCCCCCEEEeCCCCceeeEEEEEeecCCCCceE
Q 014792 5 NPESYKLGQRVHSANDARRIGTVKYVGEVQGYSGTW 40 (418)
Q Consensus 5 ~~~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~w 40 (418)
.++.|+|||||++.+.. -.|-+|--|.+-|..|..
T Consensus 127 ~~~~F~vGd~Vrv~~~~-~~~HtR~P~Y~RG~~G~I 161 (219)
T 3qyh_B 127 ARARFAVGDKVRVLNKN-PVGHTRMPRYTRGKVGTV 161 (219)
T ss_dssp SCCCCCTTCEEEECCCC-CSSCCCSCGGGTTCEEEE
T ss_pred CCCCCCCCCEEEECCCC-CCCcccccHHHCCCeeEE
Confidence 34789999999996542 234444444444444433
No 196
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=23.32 E-value=63 Score=28.66 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=18.7
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEe
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVG 31 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g 31 (418)
..++|||+|.++| ..|||.=+|
T Consensus 127 ~pf~vGD~I~i~~---~~G~V~~I~ 148 (285)
T 3udc_A 127 DQFSVGDYVTING---ISGTVEEIG 148 (285)
T ss_dssp TSCCTTCEEEETT---EEEEEEEEC
T ss_pred CCccCCCEEEECC---EEEEEEEee
Confidence 4699999999965 569999888
No 197
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=21.32 E-value=59 Score=24.64 Aligned_cols=40 Identities=30% Similarity=0.346 Sum_probs=24.7
Q ss_pred CCCCCCCCEEEeCCCCceeeEEEEEeecCC-CCceEEEEEEeCCC
Q 014792 6 PESYKLGQRVHSANDARRIGTVKYVGEVQG-YSGTWLGVDWDYGN 49 (418)
Q Consensus 6 ~~~~~~g~rv~~~~~~~~~gtvr~~g~~~~-~~~~w~gve~d~~~ 49 (418)
.+++.+||||....... .=|-|.|-. .....+-|.+||.+
T Consensus 3 ~~~v~vGq~V~akh~ng----ryy~~~V~~~~~~~~y~V~F~DgS 43 (118)
T 2qqr_A 3 MQSITAGQKVISKHKNG----RFYQCEVVRLTTETFYEVNFDDGS 43 (118)
T ss_dssp SSCCCTTCEEEEECTTS----SEEEEEEEEEEEEEEEEEEETTSC
T ss_pred cceeccCCEEEEECCCC----CEEeEEEEEEeeEEEEEEEcCCCC
Confidence 36899999998743222 234454433 34567888877665
No 198
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=21.07 E-value=27 Score=29.62 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=21.4
Q ss_pred CCCCCCCCEEEeCCCCceeeEEEEEeecCCCCce
Q 014792 6 PESYKLGQRVHSANDARRIGTVKYVGEVQGYSGT 39 (418)
Q Consensus 6 ~~~~~~g~rv~~~~~~~~~gtvr~~g~~~~~~~~ 39 (418)
++.|+|||||++.+.. -.|-+|--|.+-|..|.
T Consensus 120 ~~~F~vGd~Vrv~~~~-~~gHtR~P~YvRGk~G~ 152 (212)
T 3a8g_B 120 TTTFEVGQRVRVRDEY-VPGHIRMPAYCRGRVGT 152 (212)
T ss_dssp CCCCCTTCEEEECCCC-CSSCCSCCGGGTTCEEE
T ss_pred CcccCCCCeEEEecCC-CCCcccccHHHCCCeEE
Confidence 5789999999997543 23555555555554443
No 199
>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A
Probab=21.07 E-value=61 Score=28.79 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=18.8
Q ss_pred CCCCCCCEEEeCCCCceeeEEEEEe
Q 014792 7 ESYKLGQRVHSANDARRIGTVKYVG 31 (418)
Q Consensus 7 ~~~~~g~rv~~~~~~~~~gtvr~~g 31 (418)
..|+|||+|.++| ..|+|.-+|
T Consensus 128 ~pf~vGD~I~i~g---~~G~V~~I~ 149 (286)
T 2vv5_A 128 RPFRAGEYVDLGG---VAGTVLSVQ 149 (286)
T ss_dssp CSSCTTCEEESSS---CEEEEEEEC
T ss_pred CCccCCCEEEECC---EEEEEEEEE
Confidence 4699999999965 459999998
Done!