BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014794
(418 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 77.8 bits (190), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCR 196
+ECAVCL+E ED E R LP+C H FH C+D+WL SH TCP+CR
Sbjct: 5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50
>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein
38
Length = 75
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPES 203
C VC+ +FE + LR+LP C+H FH C+D WL ++ TCP+CRA+ P S
Sbjct: 26 CVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPSS 74
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 140 SAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL 199
S+ + +G G LEC VC ++ E++R LP C+H+FH CI WL H +CPVCR +L
Sbjct: 5 SSGTEEHVGSG-LECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSL 62
Query: 200 T 200
T
Sbjct: 63 T 63
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE 202
+C +CLS E+ E +R LP C H+FH C+D WL ++ CP+CR ++ +
Sbjct: 16 KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64
>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3
Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4710b
Length = 91
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP 201
C +C SE+ + LP C H FH C+ +WL TCPVCR P
Sbjct: 43 CPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 46.2 bits (108), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCD 211
L+C +C F + TL C H F +CI+ W+ + CP+CR ++ ++ V
Sbjct: 54 LQCIICSEYFIEAVTL----NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLV---- 105
Query: 212 SNNESNQTHNNSASEL 227
+N N+ NN +SE+
Sbjct: 106 LDNXINKMVNNLSSEV 121
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVKLCD 211
L+C +C F + TL C H F +CI+ W+ + CP+CR ++ ++ V
Sbjct: 54 LQCIICSEYFIEAVTL----NCAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLV---- 105
Query: 212 SNNESNQTHNNSASEL 227
+N N+ NN +SE+
Sbjct: 106 LDNCINKMVNNLSSEV 121
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 44.7 bits (104), Expect = 9e-05, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVC 195
CAVCL +F+ + L + P C H FH C+ WL CP+C
Sbjct: 18 CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLC 58
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNEKVK 208
+ L+C +C F + TL C H F +CI+ W+ + CP+CR ++ ++ V
Sbjct: 62 ENELQCIICSEYFIEAVTLN----CAHSFCSYCINEWMKRKIECPICRKDIKSKTYSLV- 116
Query: 209 LCDSNNESNQTHNNSASELS 228
+N N+ NN +SE+
Sbjct: 117 ---LDNCINKMVNNLSSEVK 133
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 147 IGKGALECAVCL---SEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL 199
IG G + C +C+ SE + L + +C HVF C+ L + TCP CR +
Sbjct: 68 IGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 147 IGKGALECAVCL---SEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL 199
+G G + C +C+ SE + L + +C HVF C+ L + TCP CR +
Sbjct: 3 MGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 58
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT 200
EC +C+ D L+ C H F CID W H CP+CR +T
Sbjct: 17 ECCICMDGRAD-----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59
>pdb|2ECL|A Chain A, Solution Structure Of The Ring Domain Of The Human
Ring-Box Protein 2
Length = 81
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 27/45 (60%)
Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRAN 198
C C +E + ++ + + +C+H FH C+ +W+ + CP+C+ +
Sbjct: 29 CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQD 73
>pdb|1LDJ|B Chain B, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
pdb|1LDK|C Chain C, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 90
Score = 36.2 bits (82), Expect = 0.038, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPV 194
+EC + +E C+H FH HCI WL + CP+
Sbjct: 36 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 78
>pdb|4A0K|B Chain B, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 117
Score = 36.2 bits (82), Expect = 0.038, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPV 194
+EC + +E C+H FH HCI WL + CP+
Sbjct: 63 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 105
>pdb|4A0C|D Chain D, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|F Chain F, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0L|F Chain F, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|I Chain I, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 98
Score = 36.2 bits (82), Expect = 0.038, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPV 194
+EC + +E C+H FH HCI WL + CP+
Sbjct: 44 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 86
>pdb|2LGV|A Chain A, Rbx1
Length = 100
Score = 35.8 bits (81), Expect = 0.041, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPV 194
+EC + +E C+H FH HCI WL + CP+
Sbjct: 46 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 88
>pdb|1U6G|B Chain B, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
pdb|2HYE|D Chain D, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 108
Score = 35.8 bits (81), Expect = 0.043, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPV 194
+EC + +E C+H FH HCI WL + CP+
Sbjct: 54 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 96
>pdb|3DQV|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|Y Chain Y, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 106
Score = 35.8 bits (81), Expect = 0.044, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPV 194
+EC + +E C+H FH HCI WL + CP+
Sbjct: 52 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|3DPL|R Chain R, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation.
pdb|3RTR|B Chain B, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|D Chain D, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|F Chain F, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|H Chain H, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|4F52|B Chain B, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|D Chain D, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 106
Score = 35.8 bits (81), Expect = 0.044, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPV 194
+EC + +E C+H FH HCI WL + CP+
Sbjct: 52 IECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 94
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 35.0 bits (79), Expect = 0.069, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 150 GALECAVCL---SEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL 199
G + C +C+ SE + L + +C HVF C+ L + TCP CR +
Sbjct: 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 152 LECAVCL---SEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL 199
+ C +C+ SE + L + +C HVF C+ L + TCP CR +
Sbjct: 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 33.1 bits (74), Expect = 0.31, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH---VTCPVCRANLTPES 203
LEC +CL ++ + KCDH+F C+ L CP+C+ ++T S
Sbjct: 22 LECPICLELIKEPVS----TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH---VTCPVC 195
LEC +C+ F +++ L C H C++ LAS V CP C
Sbjct: 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFC 62
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 32.3 bits (72), Expect = 0.46, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 183 DVWLASHVTCPVCRANLT--------PESNEKVKLCDSNNESNQTHNNSASELSGEQSRA 234
+V++A+ CP C+A L+ P+S V D + ++ ++ E+SG+++
Sbjct: 38 EVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQ-DALEEISGQKTVP 96
Query: 235 VIDINGEQ--SNSDAQALE 251
+ ING+ NSD + L+
Sbjct: 97 NVYINGKHIGGNSDLETLK 115
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 32.3 bits (72), Expect = 0.46, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 183 DVWLASHVTCPVCRANLT--------PESNEKVKLCDSNNESNQTHNNSASELSGEQSRA 234
+V++A+ CP C+A L+ P+S V D + ++ ++ E+SG+++
Sbjct: 18 EVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQ-DALEEISGQKTVP 76
Query: 235 VIDINGEQ--SNSDAQALE 251
+ ING+ NSD + L+
Sbjct: 77 NVYINGKHIGGNSDLETLK 95
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 150 GALECAVCL---SEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL 199
G + C +C+ SE + L + +C HVF C+ L + TCP CR +
Sbjct: 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66
>pdb|2Y43|A Chain A, Rad18 Ubiquitin Ligase Ring Domain Structure
pdb|2Y43|B Chain B, Rad18 Ubiquitin Ligase Ring Domain Structure
Length = 99
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 145 LKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT 200
+K L C +C FE ++P+C H + CI +L+ CP C +T
Sbjct: 16 MKTIDDLLRCGIC---FEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT 68
>pdb|2JRJ|A Chain A, Solution Structure Of The Human Pirh2 Ring-H2 Domain.
Northeast Structural Genomics Consortium Target Ht2b
Length = 52
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVC 195
C +CL + + + C H+ H C + L CP+C
Sbjct: 8 CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLC 49
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVT-----CPVCR 196
C +C + D+ L + +CD FH +C+D L+S + CP CR
Sbjct: 8 CHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 54
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
Length = 72
Score = 29.3 bits (64), Expect = 4.3, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVT-----CPVCR 196
C +C + D+ L + +CD FH +C+D L+S + CP CR
Sbjct: 26 CHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 72
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 29.3 bits (64), Expect = 4.3, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVT-----CPVCR 196
C +C + D+ L + +CD FH +C+D L+S + CP CR
Sbjct: 21 CHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 67
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVT-----CPVCR 196
C +C + D+ L + +CD FH +C+D L+S + CP CR
Sbjct: 23 CHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 69
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
Peptide
pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
Histone H3 Peptide
pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
Length = 69
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVT-----CPVCR 196
C +C + D+ L + +CD FH +C+D L+S + CP CR
Sbjct: 21 CHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 67
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 147 IGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRA 197
+ A C +CL ED + C H F CI W+ + TCP+C+
Sbjct: 1 MATVAERCPICL---EDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKV 48
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 28.9 bits (63), Expect = 5.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVT-----CPVCR 196
C +C + D+ L + +CD FH +C+D L+S + CP CR
Sbjct: 29 CHLCGGRQDPDKQL-MCDECDMAFHIYCLDPPLSSVPSEDEWYCPECR 75
>pdb|1CII|A Chain A, Colicin Ia
Length = 602
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 252 ITNAASHVTPMRNRP--PRLGMPERFPRSHSTGHSLVLAG 289
+T A +T +N P + PE+FP ST S+V++G
Sbjct: 249 LTRAEQQLTQQKNTPDGKTIVSPEKFPGRSSTNDSIVVSG 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,076,271
Number of Sequences: 62578
Number of extensions: 479941
Number of successful extensions: 1089
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1055
Number of HSP's gapped (non-prelim): 43
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)