Query 014794
Match_columns 418
No_of_seqs 357 out of 2100
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 08:35:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.7 4.5E-18 9.7E-23 170.5 9.9 80 122-205 203-283 (348)
2 PF13639 zf-RING_2: Ring finge 99.4 7.6E-14 1.6E-18 100.3 2.0 44 152-196 1-44 (44)
3 COG5243 HRD1 HRD ubiquitin lig 99.3 6.5E-12 1.4E-16 125.5 6.4 69 126-200 267-345 (491)
4 PHA02929 N1R/p28-like protein; 99.2 5.5E-12 1.2E-16 121.6 4.5 78 122-200 146-227 (238)
5 PF12678 zf-rbx1: RING-H2 zinc 99.2 5.9E-12 1.3E-16 100.5 3.6 57 139-196 7-73 (73)
6 COG5540 RING-finger-containing 99.1 2.2E-11 4.8E-16 119.0 3.4 51 150-201 322-373 (374)
7 PF12861 zf-Apc11: Anaphase-pr 98.8 2.6E-09 5.6E-14 87.3 3.3 63 139-201 8-83 (85)
8 cd00162 RING RING-finger (Real 98.8 5.2E-09 1.1E-13 73.3 3.4 44 153-199 1-45 (45)
9 PLN03208 E3 ubiquitin-protein 98.8 8.8E-09 1.9E-13 96.2 5.2 50 150-203 17-82 (193)
10 PF13920 zf-C3HC4_3: Zinc fing 98.8 5.1E-09 1.1E-13 77.2 2.8 46 151-200 2-48 (50)
11 KOG0317 Predicted E3 ubiquitin 98.7 7.8E-09 1.7E-13 101.0 3.0 51 149-203 237-287 (293)
12 COG5194 APC11 Component of SCF 98.7 9.1E-09 2E-13 82.5 2.8 66 137-202 6-83 (88)
13 KOG0320 Predicted E3 ubiquitin 98.7 7.7E-09 1.7E-13 94.8 2.7 53 148-202 128-180 (187)
14 KOG0823 Predicted E3 ubiquitin 98.7 1.1E-08 2.5E-13 97.2 3.4 53 148-204 44-99 (230)
15 KOG0802 E3 ubiquitin ligase [P 98.7 2.9E-08 6.4E-13 106.6 6.8 51 149-200 289-341 (543)
16 PF13923 zf-C3HC4_2: Zinc fing 98.7 1.5E-08 3.2E-13 71.0 2.8 39 154-195 1-39 (39)
17 PHA02926 zinc finger-like prot 98.6 1.8E-08 3.9E-13 95.5 3.3 52 149-200 168-230 (242)
18 PF14634 zf-RING_5: zinc-RING 98.5 8.6E-08 1.9E-12 69.0 2.8 44 153-197 1-44 (44)
19 KOG1734 Predicted RING-contain 98.5 9.4E-08 2E-12 92.6 3.9 54 149-203 222-284 (328)
20 KOG2930 SCF ubiquitin ligase, 98.5 5.4E-08 1.2E-12 81.7 1.4 68 133-200 28-108 (114)
21 KOG1493 Anaphase-promoting com 98.4 3.6E-08 7.9E-13 78.5 -0.1 64 137-200 6-81 (84)
22 smart00184 RING Ring finger. E 98.4 1.5E-07 3.2E-12 63.5 2.9 38 154-195 1-39 (39)
23 smart00504 Ubox Modified RING 98.4 2.1E-07 4.6E-12 71.0 3.6 46 152-201 2-47 (63)
24 PF00097 zf-C3HC4: Zinc finger 98.4 1.4E-07 3.1E-12 66.3 2.2 39 154-195 1-41 (41)
25 PF15227 zf-C3HC4_4: zinc fing 98.3 3.4E-07 7.4E-12 65.5 2.8 38 154-195 1-42 (42)
26 TIGR00599 rad18 DNA repair pro 98.3 4E-07 8.7E-12 94.0 3.3 49 149-201 24-72 (397)
27 KOG0828 Predicted E3 ubiquitin 98.2 1.7E-06 3.7E-11 89.9 5.3 51 150-201 570-635 (636)
28 COG5574 PEX10 RING-finger-cont 98.1 1.4E-06 3.1E-11 84.4 2.1 52 149-204 213-266 (271)
29 COG5219 Uncharacterized conser 98.0 1E-06 2.3E-11 96.8 0.3 52 149-200 1467-1523(1525)
30 smart00744 RINGv The RING-vari 98.0 5.3E-06 1.2E-10 61.3 2.7 42 153-196 1-49 (49)
31 KOG2164 Predicted E3 ubiquitin 97.9 6.7E-06 1.4E-10 86.2 2.7 52 151-206 186-242 (513)
32 PF11793 FANCL_C: FANCL C-term 97.9 4.2E-06 9.2E-11 66.3 0.6 50 151-200 2-66 (70)
33 KOG0804 Cytoplasmic Zn-finger 97.8 6.6E-06 1.4E-10 84.9 1.4 48 150-200 174-222 (493)
34 PF04564 U-box: U-box domain; 97.8 1.1E-05 2.5E-10 64.1 2.3 48 150-201 3-51 (73)
35 PF13445 zf-RING_UBOX: RING-ty 97.8 1.6E-05 3.5E-10 57.3 2.4 38 154-193 1-43 (43)
36 KOG2177 Predicted E3 ubiquitin 97.7 9.6E-06 2.1E-10 76.9 1.3 44 149-196 11-54 (386)
37 TIGR00570 cdk7 CDK-activating 97.7 2.1E-05 4.5E-10 78.7 3.6 51 151-202 3-56 (309)
38 KOG0827 Predicted E3 ubiquitin 97.7 1.4E-05 3E-10 81.2 1.6 46 151-196 4-52 (465)
39 KOG4265 Predicted E3 ubiquitin 97.6 3E-05 6.5E-10 78.3 3.0 49 149-201 288-337 (349)
40 COG5432 RAD18 RING-finger-cont 97.6 2.6E-05 5.6E-10 76.7 1.8 47 150-200 24-70 (391)
41 KOG0287 Postreplication repair 97.6 1.8E-05 3.9E-10 79.2 0.6 48 150-201 22-69 (442)
42 KOG1785 Tyrosine kinase negati 97.4 8.6E-05 1.9E-09 75.8 2.5 51 150-204 368-420 (563)
43 KOG1039 Predicted E3 ubiquitin 97.4 7.9E-05 1.7E-09 75.8 2.2 51 150-200 160-221 (344)
44 KOG4445 Uncharacterized conser 97.4 5.4E-05 1.2E-09 74.7 0.9 53 150-203 114-189 (368)
45 KOG3970 Predicted E3 ubiquitin 97.3 0.00016 3.5E-09 68.9 2.6 60 149-210 48-115 (299)
46 KOG0311 Predicted E3 ubiquitin 97.2 3.2E-05 7E-10 77.8 -2.3 50 150-202 42-92 (381)
47 KOG0825 PHD Zn-finger protein 97.2 5.7E-05 1.2E-09 82.3 -0.7 49 151-200 123-171 (1134)
48 KOG0824 Predicted E3 ubiquitin 97.1 0.00022 4.7E-09 70.7 1.7 48 151-202 7-55 (324)
49 PF14835 zf-RING_6: zf-RING of 97.1 0.00021 4.6E-09 55.6 1.2 47 151-202 7-53 (65)
50 KOG1645 RING-finger-containing 97.1 0.00035 7.6E-09 71.7 2.8 50 150-199 3-55 (463)
51 KOG0978 E3 ubiquitin ligase in 97.0 0.00022 4.8E-09 78.0 0.6 51 149-203 641-692 (698)
52 KOG4172 Predicted E3 ubiquitin 96.5 0.00066 1.4E-08 51.2 -0.0 46 151-200 7-54 (62)
53 KOG4159 Predicted E3 ubiquitin 96.4 0.0018 3.9E-08 67.3 2.8 49 149-201 82-130 (398)
54 KOG0297 TNF receptor-associate 96.4 0.0019 4.2E-08 67.1 2.4 52 149-203 19-70 (391)
55 PF05883 Baculo_RING: Baculovi 96.3 0.0018 3.8E-08 57.6 1.5 47 150-197 25-77 (134)
56 KOG1941 Acetylcholine receptor 96.2 0.0048 1E-07 63.3 4.3 47 150-197 364-413 (518)
57 PF11789 zf-Nse: Zinc-finger o 96.2 0.0025 5.4E-08 48.6 1.6 42 150-194 10-53 (57)
58 KOG1002 Nucleotide excision re 95.6 0.0048 1E-07 65.3 1.4 49 149-201 534-587 (791)
59 KOG0801 Predicted E3 ubiquitin 95.5 0.0047 1E-07 56.4 0.7 30 149-179 175-204 (205)
60 KOG1952 Transcription factor N 95.4 0.0075 1.6E-07 67.0 2.0 50 149-198 189-245 (950)
61 KOG1428 Inhibitor of type V ad 95.1 0.013 2.8E-07 68.0 2.7 51 149-200 3484-3544(3738)
62 KOG1571 Predicted E3 ubiquitin 95.1 0.012 2.6E-07 59.9 2.2 45 149-200 303-347 (355)
63 PHA02862 5L protein; Provision 95.1 0.015 3.2E-07 52.3 2.4 48 152-203 3-56 (156)
64 PF12906 RINGv: RING-variant d 95.0 0.021 4.5E-07 41.8 2.6 40 154-195 1-47 (47)
65 KOG2660 Locus-specific chromos 95.0 0.0058 1.3E-07 61.5 -0.5 50 149-201 13-62 (331)
66 KOG0826 Predicted E3 ubiquitin 94.9 0.033 7.1E-07 56.2 4.6 47 150-199 299-345 (357)
67 KOG1814 Predicted E3 ubiquitin 94.7 0.018 3.8E-07 59.6 2.3 49 149-198 182-238 (445)
68 KOG2879 Predicted E3 ubiquitin 94.7 0.03 6.5E-07 55.2 3.7 51 147-200 235-287 (298)
69 PHA03096 p28-like protein; Pro 94.6 0.015 3.3E-07 58.1 1.5 46 152-197 179-231 (284)
70 PF10367 Vps39_2: Vacuolar sor 94.5 0.02 4.4E-07 47.7 1.7 32 150-183 77-108 (109)
71 KOG3039 Uncharacterized conser 94.1 0.041 9E-07 53.5 3.1 54 150-203 220-273 (303)
72 KOG4692 Predicted E3 ubiquitin 94.0 0.042 9.2E-07 55.9 3.2 49 148-200 419-467 (489)
73 PHA02825 LAP/PHD finger-like p 93.8 0.044 9.5E-07 50.1 2.6 50 149-202 6-61 (162)
74 COG5152 Uncharacterized conser 93.6 0.029 6.2E-07 53.0 1.1 46 150-199 195-240 (259)
75 COG5222 Uncharacterized conser 93.5 0.036 7.8E-07 55.2 1.5 46 152-200 275-322 (427)
76 KOG3268 Predicted E3 ubiquitin 93.4 0.05 1.1E-06 50.6 2.3 31 172-202 189-230 (234)
77 PF14570 zf-RING_4: RING/Ubox 93.3 0.056 1.2E-06 39.9 2.0 45 154-199 1-47 (48)
78 PF04641 Rtf2: Rtf2 RING-finge 93.1 0.1 2.2E-06 51.4 4.1 53 149-202 111-163 (260)
79 COG5236 Uncharacterized conser 92.4 0.087 1.9E-06 53.5 2.6 70 125-200 37-108 (493)
80 KOG4275 Predicted E3 ubiquitin 92.2 0.033 7.2E-07 55.3 -0.6 42 151-200 300-342 (350)
81 KOG2114 Vacuolar assembly/sort 92.0 0.066 1.4E-06 59.8 1.3 42 152-199 841-882 (933)
82 KOG0827 Predicted E3 ubiquitin 91.9 0.012 2.6E-07 60.4 -4.2 51 150-201 195-246 (465)
83 KOG4739 Uncharacterized protei 91.9 0.057 1.2E-06 52.3 0.6 45 153-201 5-49 (233)
84 KOG4185 Predicted E3 ubiquitin 91.1 0.12 2.7E-06 51.2 2.1 48 151-199 3-54 (296)
85 KOG1813 Predicted E3 ubiquitin 90.8 0.1 2.2E-06 52.0 1.1 46 151-200 241-286 (313)
86 PF08746 zf-RING-like: RING-li 90.7 0.11 2.5E-06 37.3 1.0 41 154-195 1-43 (43)
87 COG5175 MOT2 Transcriptional r 90.5 0.15 3.2E-06 51.8 2.0 52 149-201 12-65 (480)
88 PF14447 Prok-RING_4: Prokaryo 89.2 0.24 5.3E-06 37.6 1.7 44 153-202 9-52 (55)
89 PF03869 Arc: Arc-like DNA bin 88.9 0.24 5.3E-06 36.7 1.6 20 290-309 2-21 (50)
90 KOG1001 Helicase-like transcri 88.8 0.15 3.3E-06 56.7 0.6 47 152-203 455-503 (674)
91 PF14446 Prok-RING_1: Prokaryo 87.8 0.58 1.3E-05 35.4 3.0 35 150-184 4-38 (54)
92 KOG2034 Vacuolar sorting prote 87.6 0.23 5E-06 55.9 1.0 35 150-186 816-850 (911)
93 KOG0309 Conserved WD40 repeat- 87.1 0.31 6.7E-06 54.0 1.7 23 172-194 1047-1069(1081)
94 KOG0802 E3 ubiquitin ligase [P 85.8 0.42 9E-06 51.9 1.8 48 148-203 476-523 (543)
95 KOG0298 DEAD box-containing he 85.6 0.25 5.5E-06 57.6 0.1 45 150-197 1152-1196(1394)
96 KOG1940 Zn-finger protein [Gen 85.6 0.4 8.7E-06 47.7 1.5 47 150-197 157-204 (276)
97 PF07800 DUF1644: Protein of u 85.5 0.87 1.9E-05 41.8 3.4 35 151-187 2-47 (162)
98 COG5183 SSM4 Protein involved 84.8 0.6 1.3E-05 52.2 2.5 55 149-203 10-69 (1175)
99 PF10272 Tmpp129: Putative tra 84.3 1.3 2.7E-05 45.9 4.4 53 149-201 269-352 (358)
100 KOG3161 Predicted E3 ubiquitin 83.6 0.31 6.8E-06 53.1 -0.3 45 150-197 10-54 (861)
101 COG5220 TFB3 Cdk activating ki 81.5 0.54 1.2E-05 45.8 0.4 50 150-199 9-63 (314)
102 KOG1609 Protein involved in mR 80.7 0.68 1.5E-05 45.7 0.9 50 151-201 78-135 (323)
103 PF12273 RCR: Chitin synthesis 79.7 1.2 2.5E-05 39.2 2.0 15 81-95 4-18 (130)
104 KOG2932 E3 ubiquitin ligase in 79.6 1 2.2E-05 45.4 1.7 43 152-199 91-133 (389)
105 KOG2817 Predicted E3 ubiquitin 78.4 1.5 3.2E-05 45.6 2.5 46 150-196 333-381 (394)
106 KOG3002 Zn finger protein [Gen 78.2 1.5 3.3E-05 44.3 2.4 45 150-200 47-91 (299)
107 KOG0269 WD40 repeat-containing 77.9 1.7 3.7E-05 48.5 2.9 42 151-194 779-820 (839)
108 KOG3053 Uncharacterized conser 77.2 1 2.2E-05 44.4 0.8 51 150-201 19-83 (293)
109 PF03854 zf-P11: P-11 zinc fin 76.3 1.2 2.6E-05 32.9 0.8 43 152-200 3-46 (50)
110 KOG0825 PHD Zn-finger protein 75.5 1.3 2.8E-05 49.6 1.2 51 150-200 95-154 (1134)
111 KOG3800 Predicted E3 ubiquitin 74.1 2.4 5.2E-05 42.4 2.6 47 153-200 2-51 (300)
112 KOG1812 Predicted E3 ubiquitin 73.1 1.5 3.3E-05 45.6 1.0 38 150-188 145-183 (384)
113 KOG1100 Predicted E3 ubiquitin 72.4 1.9 4.2E-05 41.2 1.5 39 154-200 161-200 (207)
114 PHA01513 mnt Mnt 71.3 2.7 5.8E-05 34.6 1.8 20 290-309 3-22 (82)
115 KOG4362 Transcriptional regula 70.9 1.1 2.4E-05 49.7 -0.7 46 151-200 21-69 (684)
116 TIGR00622 ssl1 transcription f 69.8 5.8 0.00013 34.5 3.7 70 126-196 31-110 (112)
117 PF05290 Baculo_IE-1: Baculovi 68.6 3.6 7.9E-05 36.8 2.2 53 150-202 79-134 (140)
118 KOG3899 Uncharacterized conser 66.4 2.8 6.1E-05 42.1 1.1 30 173-202 325-367 (381)
119 PF13901 DUF4206: Domain of un 66.2 4.5 9.7E-05 38.4 2.5 40 151-196 152-196 (202)
120 KOG1829 Uncharacterized conser 65.2 2.1 4.7E-05 46.7 0.1 44 150-197 510-558 (580)
121 PF07975 C1_4: TFIIH C1-like d 64.8 4.4 9.5E-05 30.4 1.7 43 154-196 2-50 (51)
122 KOG4367 Predicted Zn-finger pr 63.4 2.8 6.2E-05 44.1 0.6 32 150-185 3-34 (699)
123 KOG3005 GIY-YIG type nuclease 61.2 4.8 0.0001 39.9 1.7 51 150-200 181-243 (276)
124 PF02439 Adeno_E3_CR2: Adenovi 60.8 16 0.00035 25.8 3.7 22 78-99 6-27 (38)
125 smart00132 LIM Zinc-binding do 60.5 9.1 0.0002 25.2 2.5 36 154-199 2-37 (39)
126 KOG4718 Non-SMC (structural ma 60.0 3.9 8.4E-05 39.3 0.8 44 150-196 180-223 (235)
127 PF01102 Glycophorin_A: Glycop 58.6 13 0.00029 32.8 3.8 25 77-101 66-90 (122)
128 KOG3113 Uncharacterized conser 58.1 8.7 0.00019 37.9 2.9 52 149-202 109-160 (293)
129 COG5109 Uncharacterized conser 57.9 23 0.00049 36.2 5.8 45 150-195 335-382 (396)
130 KOG2066 Vacuolar assembly/sort 57.8 4.4 9.4E-05 45.6 0.8 44 150-195 783-830 (846)
131 PLN02189 cellulose synthase 54.0 49 0.0011 38.8 8.3 53 150-202 33-89 (1040)
132 PF00412 LIM: LIM domain; Int 53.7 11 0.00024 27.5 2.3 39 154-202 1-39 (58)
133 PHA03163 hypothetical protein; 53.3 39 0.00085 28.2 5.5 10 56-65 26-35 (92)
134 smart00249 PHD PHD zinc finger 52.5 11 0.00023 25.8 1.8 31 153-184 1-31 (47)
135 KOG2807 RNA polymerase II tran 52.1 13 0.00028 38.1 3.0 70 126-197 306-375 (378)
136 KOG3842 Adaptor protein Pellin 50.8 14 0.00031 37.5 3.1 52 150-202 340-416 (429)
137 PF00628 PHD: PHD-finger; Int 48.2 13 0.00029 26.7 1.9 43 153-196 1-49 (51)
138 PF05534 HicB: HicB family; I 45.5 14 0.00029 27.5 1.5 17 293-309 18-34 (51)
139 KOG1815 Predicted E3 ubiquitin 43.6 11 0.00025 39.8 1.3 37 149-188 68-104 (444)
140 PF02891 zf-MIZ: MIZ/SP-RING z 43.4 23 0.00049 26.1 2.5 43 152-198 3-50 (50)
141 PF10571 UPF0547: Uncharacteri 42.5 15 0.00033 23.6 1.2 23 153-177 2-24 (26)
142 PF13719 zinc_ribbon_5: zinc-r 41.6 16 0.00034 25.2 1.3 26 153-178 4-36 (37)
143 PF11023 DUF2614: Protein of u 41.5 20 0.00044 31.2 2.2 24 186-209 82-105 (114)
144 PF13994 PgaD: PgaD-like prote 40.8 69 0.0015 28.4 5.6 12 123-134 109-120 (138)
145 PHA02849 putative transmembran 40.0 38 0.00083 27.6 3.4 31 73-103 11-41 (82)
146 PF12575 DUF3753: Protein of u 39.9 69 0.0015 25.8 4.8 22 78-99 48-69 (72)
147 PHA00617 ribbon-helix-helix do 39.7 17 0.00036 29.8 1.4 21 288-308 35-55 (80)
148 PF12273 RCR: Chitin synthesis 39.2 18 0.00039 31.7 1.6 16 80-95 6-21 (130)
149 PF01363 FYVE: FYVE zinc finge 38.3 17 0.00037 27.9 1.2 37 149-185 7-43 (69)
150 PF04710 Pellino: Pellino; In 37.0 11 0.00025 39.3 0.0 51 151-202 328-403 (416)
151 KOG2041 WD40 repeat protein [G 36.9 26 0.00055 39.6 2.6 48 148-199 1128-1184(1189)
152 KOG1812 Predicted E3 ubiquitin 36.2 18 0.0004 37.7 1.4 45 150-195 305-351 (384)
153 KOG3039 Uncharacterized conser 35.9 20 0.00043 35.4 1.5 35 150-188 42-76 (303)
154 PHA03054 IMV membrane protein; 35.9 74 0.0016 25.5 4.3 24 77-100 47-70 (72)
155 PHA02819 hypothetical protein; 35.4 64 0.0014 25.8 3.9 24 77-100 45-68 (71)
156 PLN02436 cellulose synthase A 34.8 46 0.00099 39.2 4.3 52 150-201 35-90 (1094)
157 PHA02650 hypothetical protein; 34.6 66 0.0014 26.3 4.0 25 77-101 48-72 (81)
158 KOG1245 Chromatin remodeling c 34.6 20 0.00043 43.5 1.5 50 149-199 1106-1159(1404)
159 KOG2068 MOT2 transcription fac 34.5 26 0.00057 35.8 2.1 49 150-199 248-297 (327)
160 PF01708 Gemini_mov: Geminivir 34.4 35 0.00077 28.5 2.5 35 69-103 29-63 (91)
161 PF13717 zinc_ribbon_4: zinc-r 33.2 30 0.00064 23.8 1.6 26 153-178 4-36 (36)
162 PHA02975 hypothetical protein; 32.7 74 0.0016 25.3 3.9 23 78-100 44-66 (69)
163 PHA02844 putative transmembran 32.6 79 0.0017 25.6 4.1 24 78-101 48-71 (75)
164 KOG3579 Predicted E3 ubiquitin 31.6 31 0.00066 34.8 2.0 40 150-189 267-306 (352)
165 PHA02681 ORF089 virion membran 31.4 1.2E+02 0.0025 25.2 4.9 20 84-103 10-29 (92)
166 PRK05978 hypothetical protein; 30.7 32 0.00069 31.4 1.8 27 174-205 42-68 (148)
167 PF14800 DUF4481: Domain of un 29.8 1.1E+02 0.0024 31.0 5.6 32 28-59 56-87 (308)
168 PF15102 TMEM154: TMEM154 prot 29.2 32 0.0007 31.3 1.6 10 179-188 127-136 (146)
169 PHA02902 putative IMV membrane 29.2 1.7E+02 0.0037 23.1 5.3 18 84-101 10-27 (70)
170 PF01402 RHH_1: Ribbon-helix-h 29.1 30 0.00066 23.4 1.1 15 294-308 1-15 (39)
171 KOG4323 Polycomb-like PHD Zn-f 28.4 17 0.00038 38.8 -0.3 50 150-199 167-225 (464)
172 PF06906 DUF1272: Protein of u 28.4 80 0.0017 24.3 3.3 45 153-202 7-54 (57)
173 PHA03240 envelope glycoprotein 28.0 44 0.00095 32.4 2.3 32 75-106 211-242 (258)
174 PHA03156 hypothetical protein; 27.8 2.4E+02 0.0052 23.6 6.3 16 37-52 3-18 (90)
175 cd00350 rubredoxin_like Rubred 27.6 39 0.00084 22.6 1.4 20 172-197 6-25 (33)
176 smart00064 FYVE Protein presen 26.8 51 0.0011 25.1 2.2 37 150-186 9-45 (68)
177 PLN02400 cellulose synthase 26.7 61 0.0013 38.3 3.6 53 150-202 35-91 (1085)
178 PLN02638 cellulose synthase A 26.6 80 0.0017 37.3 4.5 51 150-200 16-70 (1079)
179 cd00065 FYVE FYVE domain; Zinc 26.3 44 0.00096 24.4 1.7 34 152-185 3-36 (57)
180 PRK06231 F0F1 ATP synthase sub 25.9 54 0.0012 31.2 2.6 18 74-91 44-61 (205)
181 PLN02195 cellulose synthase A 25.8 86 0.0019 36.7 4.5 51 150-200 5-59 (977)
182 PHA02657 hypothetical protein; 24.9 65 0.0014 26.8 2.5 29 73-103 23-51 (95)
183 PF14311 DUF4379: Domain of un 24.5 48 0.001 24.5 1.6 23 172-195 33-55 (55)
184 COG3071 HemY Uncharacterized e 24.3 97 0.0021 32.6 4.2 9 272-280 252-260 (400)
185 PF15050 SCIMP: SCIMP protein 23.9 86 0.0019 27.7 3.2 12 92-103 23-34 (133)
186 PHA02692 hypothetical protein; 23.8 1.2E+02 0.0026 24.3 3.6 16 85-100 53-68 (70)
187 PF13908 Shisa: Wnt and FGF in 23.5 51 0.0011 30.3 1.9 15 84-98 84-98 (179)
188 PF10717 ODV-E18: Occlusion-de 23.4 1.2E+02 0.0025 25.2 3.6 17 71-87 19-35 (85)
189 PF13832 zf-HC5HC2H_2: PHD-zin 23.4 49 0.0011 27.7 1.6 34 150-184 54-87 (110)
190 PF02060 ISK_Channel: Slow vol 23.2 1.1E+02 0.0023 27.3 3.6 28 76-103 43-70 (129)
191 smart00531 TFIIE Transcription 23.1 65 0.0014 28.8 2.4 15 189-203 123-137 (147)
192 PF07438 DUF1514: Protein of u 22.9 71 0.0015 25.1 2.2 18 78-95 1-18 (66)
193 PF14569 zf-UDP: Zinc-binding 22.7 1.1E+02 0.0023 25.1 3.2 54 150-203 8-65 (80)
194 PF02009 Rifin_STEVOR: Rifin/s 22.5 74 0.0016 32.2 2.9 15 78-92 259-273 (299)
195 PHA02831 EEV host range protei 22.3 87 0.0019 31.3 3.3 25 75-99 229-253 (268)
196 PF07649 C1_3: C1-like domain; 21.9 64 0.0014 20.9 1.6 29 153-182 2-30 (30)
197 PRK14907 rplD 50S ribosomal pr 21.5 63 0.0014 32.7 2.2 15 289-303 96-110 (295)
198 PF06844 DUF1244: Protein of u 21.4 47 0.001 26.3 1.0 13 176-188 11-23 (68)
199 PRK02935 hypothetical protein; 21.3 4.1E+02 0.009 23.0 6.7 21 188-208 85-105 (110)
200 PF04423 Rad50_zn_hook: Rad50 21.3 32 0.00069 25.4 0.0 11 191-201 22-32 (54)
201 KOG2071 mRNA cleavage and poly 21.0 49 0.0011 36.4 1.3 35 149-185 511-556 (579)
202 PRK10714 undecaprenyl phosphat 20.6 2.7E+02 0.0058 28.0 6.6 20 27-46 223-242 (325)
203 PRK03564 formate dehydrogenase 20.5 56 0.0012 33.3 1.6 42 150-197 186-234 (309)
204 PF07330 DUF1467: Protein of u 20.5 4.9E+02 0.011 21.5 8.0 58 41-98 12-71 (85)
205 PF05808 Podoplanin: Podoplani 20.3 34 0.00074 31.6 0.0 30 77-106 131-160 (162)
206 PF14979 TMEM52: Transmembrane 20.3 1.4E+02 0.0029 27.4 3.8 34 73-106 15-50 (154)
207 PF07010 Endomucin: Endomucin; 20.3 1.7E+02 0.0036 28.8 4.6 6 100-105 212-217 (259)
208 PRK13415 flagella biosynthesis 20.2 3.2E+02 0.0069 26.6 6.5 25 78-102 65-89 (219)
209 TIGR02269 Myxococcus xanthus p 20.2 51 0.0011 31.4 1.1 20 289-308 144-163 (211)
210 PF12877 DUF3827: Domain of un 20.0 1.2E+02 0.0026 34.0 4.0 18 78-95 269-286 (684)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.5e-18 Score=170.45 Aligned_cols=80 Identities=35% Similarity=0.855 Sum_probs=68.8
Q ss_pred cCCCCCHHHHhhCCceeeecccccccCCCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCC-CCCcccccC
Q 014794 122 RNRGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVT-CPVCRANLT 200 (418)
Q Consensus 122 r~rgl~~~~i~~lP~~~y~~~~~~~~~~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~t-CP~CR~~l~ 200 (418)
+.+.+.+..++++|+..|....+.. ..+.|+||||+|++++++|+|| |+|.||..|||.||..+.+ ||+|++++.
T Consensus 203 ~~~r~~k~~l~~~p~~~f~~~~~~~---~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 203 RRNRLIKRLLKKLPVRTFTKGDDED---ATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred hhhhhHHHHHhhCCcEEeccccccC---CCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 3567889999999999999876644 2279999999999999999999 9999999999999999855 999999887
Q ss_pred CCCcc
Q 014794 201 PESNE 205 (418)
Q Consensus 201 ~~~~~ 205 (418)
...+.
T Consensus 279 ~~~~~ 283 (348)
T KOG4628|consen 279 TDSGS 283 (348)
T ss_pred CCCCC
Confidence 55444
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.40 E-value=7.6e-14 Score=100.30 Aligned_cols=44 Identities=57% Similarity=1.256 Sum_probs=40.4
Q ss_pred cccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcc
Q 014794 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCR 196 (418)
Q Consensus 152 ~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR 196 (418)
++|+||+++|..++.+..++ |+|.||.+||..|++.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999999999998 999999999999999999999997
No 3
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=6.5e-12 Score=125.48 Aligned_cols=69 Identities=30% Similarity=0.784 Sum_probs=52.4
Q ss_pred CCHHHHhhCCceeeecccccccCCCCccccccccc-ccCC---------CceEecCCCCccccchhHHHHHhcCCCCCCc
Q 014794 126 LDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSE-FEDD---------ETLRLLPKCDHVFHPHCIDVWLASHVTCPVC 195 (418)
Q Consensus 126 l~~~~i~~lP~~~y~~~~~~~~~~~~~~CaICl~~-f~~~---------~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~C 195 (418)
+.++.-+.+|+....+ .+.++..|+||+++ |..+ .+.+.|| |||+||-+|+..|++++++||+|
T Consensus 267 ~~kdl~~~~~t~t~eq-----l~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPIC 340 (491)
T COG5243 267 ATKDLNAMYPTATEEQ-----LTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPIC 340 (491)
T ss_pred HhhHHHhhcchhhhhh-----hcCCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcc
Confidence 3444444555444333 35688899999999 5543 2456788 99999999999999999999999
Q ss_pred ccccC
Q 014794 196 RANLT 200 (418)
Q Consensus 196 R~~l~ 200 (418)
|.++.
T Consensus 341 r~p~i 345 (491)
T COG5243 341 RRPVI 345 (491)
T ss_pred cCccc
Confidence 99954
No 4
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.23 E-value=5.5e-12 Score=121.60 Aligned_cols=78 Identities=29% Similarity=0.652 Sum_probs=59.8
Q ss_pred cCCCCCHHHHhhCCceeeecccccccCCCCcccccccccccCCCc----eEecCCCCccccchhHHHHHhcCCCCCCccc
Q 014794 122 RNRGLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDET----LRLLPKCDHVFHPHCIDVWLASHVTCPVCRA 197 (418)
Q Consensus 122 r~rgl~~~~i~~lP~~~y~~~~~~~~~~~~~~CaICl~~f~~~~~----~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~ 197 (418)
...+..+.+++.+|.+...-..... ...+.+|+||++.+.+++. +.+++.|+|.||..||..|+..+.+||+||.
T Consensus 146 ~k~~~~~~~i~~lp~vl~~~e~~~~-~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~ 224 (238)
T PHA02929 146 KKGKNYKKFLKTIPSVLSEYEKLYN-RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRT 224 (238)
T ss_pred HhcchhHHHHHhcchhhhhhhhhhc-CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCC
Confidence 3567789999999988654322222 2356799999999876541 2345569999999999999999999999999
Q ss_pred ccC
Q 014794 198 NLT 200 (418)
Q Consensus 198 ~l~ 200 (418)
.+.
T Consensus 225 ~~~ 227 (238)
T PHA02929 225 PFI 227 (238)
T ss_pred Eee
Confidence 775
No 5
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.23 E-value=5.9e-12 Score=100.49 Aligned_cols=57 Identities=39% Similarity=0.831 Sum_probs=41.9
Q ss_pred eecccccccCCCCcccccccccccCC----------CceEecCCCCccccchhHHHHHhcCCCCCCcc
Q 014794 139 YSAVKDLKIGKGALECAVCLSEFEDD----------ETLRLLPKCDHVFHPHCIDVWLASHVTCPVCR 196 (418)
Q Consensus 139 y~~~~~~~~~~~~~~CaICl~~f~~~----------~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR 196 (418)
.+.+........++.|+||++.|.+. -.+...+ |+|.||..||..||+.+.+||+||
T Consensus 7 ~~~v~~~~~~~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 7 WNAVALWSWDIADDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp EEEEEEEEESSCCSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred EEEEEEEeecCcCCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence 34444444455666799999999432 2344444 999999999999999999999998
No 6
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.2e-11 Score=119.04 Aligned_cols=51 Identities=49% Similarity=1.194 Sum_probs=46.7
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCcccccCC
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTP 201 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~ 201 (418)
...+|+|||+.|..+++++++| |.|.||..|++.|+.. ...||+||.++.+
T Consensus 322 ~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 4579999999999999999999 9999999999999995 6689999998864
No 7
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.81 E-value=2.6e-09 Score=87.32 Aligned_cols=63 Identities=32% Similarity=0.680 Sum_probs=45.6
Q ss_pred eecccccccC-CCCcccccccccccC--------CC-ceEecCCCCccccchhHHHHHhc---CCCCCCcccccCC
Q 014794 139 YSAVKDLKIG-KGALECAVCLSEFED--------DE-TLRLLPKCDHVFHPHCIDVWLAS---HVTCPVCRANLTP 201 (418)
Q Consensus 139 y~~~~~~~~~-~~~~~CaICl~~f~~--------~~-~~r~lp~C~H~FH~~CI~~WL~~---~~tCP~CR~~l~~ 201 (418)
+..+...+.. ..++.|.||...|.. ++ ...++.+|+|.||.+||.+||.. +..||+||++...
T Consensus 8 w~~va~W~Wd~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 8 WHAVATWKWDVANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred EEEEEEEEEecCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 3444444442 357899999999972 22 23345579999999999999986 4689999997653
No 8
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.77 E-value=5.2e-09 Score=73.26 Aligned_cols=44 Identities=57% Similarity=1.272 Sum_probs=36.6
Q ss_pred ccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCccccc
Q 014794 153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANL 199 (418)
Q Consensus 153 ~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l 199 (418)
+|+||++.+ .+...+.+ |+|.||..|+..|+.. +..||+|+..+
T Consensus 1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 599999998 33455555 9999999999999998 77899999754
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.75 E-value=8.8e-09 Score=96.20 Aligned_cols=50 Identities=30% Similarity=0.857 Sum_probs=40.9
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHHhc----------------CCCCCCcccccCCCC
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS----------------HVTCPVCRANLTPES 203 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~----------------~~tCP~CR~~l~~~~ 203 (418)
+..+|+||++.+++ ..+++ |+|.||..||..|+.. +..||+||.++....
T Consensus 17 ~~~~CpICld~~~d---PVvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 17 GDFDCNICLDQVRD---PVVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred CccCCccCCCcCCC---cEEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 67899999999866 45566 9999999999999852 347999999997543
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.75 E-value=5.1e-09 Score=77.21 Aligned_cols=46 Identities=35% Similarity=0.904 Sum_probs=39.3
Q ss_pred CcccccccccccCCCceEecCCCCcc-ccchhHHHHHhcCCCCCCcccccC
Q 014794 151 ALECAVCLSEFEDDETLRLLPKCDHV-FHPHCIDVWLASHVTCPVCRANLT 200 (418)
Q Consensus 151 ~~~CaICl~~f~~~~~~r~lp~C~H~-FH~~CI~~WL~~~~tCP~CR~~l~ 200 (418)
+..|.||++...+ +.++| |+|. |+..|+..|+.....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 4689999998665 77788 9999 999999999999999999999874
No 11
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=7.8e-09 Score=101.04 Aligned_cols=51 Identities=29% Similarity=0.832 Sum_probs=43.6
Q ss_pred CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCCC
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPES 203 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~~ 203 (418)
.....|.+||+...+ ..-+| |||+||..||..|......||+||..+.+.+
T Consensus 237 ~a~~kC~LCLe~~~~---pSaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 237 EATRKCSLCLENRSN---PSATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCceEEEecCCCC---CCcCc-CcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 456789999999776 34567 9999999999999999999999999887644
No 12
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.69 E-value=9.1e-09 Score=82.53 Aligned_cols=66 Identities=29% Similarity=0.510 Sum_probs=49.2
Q ss_pred eeeecccccccCCCCcccccccccccC------------CCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794 137 FVYSAVKDLKIGKGALECAVCLSEFED------------DETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE 202 (418)
Q Consensus 137 ~~y~~~~~~~~~~~~~~CaICl~~f~~------------~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~ 202 (418)
.++..+......-..+.|+||...|.+ ++.....-.|+|.||.+||..||..+..||+||+.....
T Consensus 6 kkw~aVa~Wswdi~id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 6 KKWHAVALWSWDIPIDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred eeEeEEEEEecccccchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 445555544444456789999888753 234445557999999999999999999999999987544
No 13
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=7.7e-09 Score=94.77 Aligned_cols=53 Identities=32% Similarity=0.788 Sum_probs=44.6
Q ss_pred CCCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794 148 GKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE 202 (418)
Q Consensus 148 ~~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~ 202 (418)
.++...|+|||+.+..... +-.+|||+||..||..-+.....||+|++.|..+
T Consensus 128 ~~~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred cccccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 3466899999999887544 3347999999999999999999999999977654
No 14
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.1e-08 Score=97.24 Aligned_cols=53 Identities=30% Similarity=0.768 Sum_probs=42.5
Q ss_pred CCCCcccccccccccCCCceEecCCCCccccchhHHHHHhc---CCCCCCcccccCCCCc
Q 014794 148 GKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS---HVTCPVCRANLTPESN 204 (418)
Q Consensus 148 ~~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~---~~tCP~CR~~l~~~~~ 204 (418)
.....+|.|||+.-++ .++.. |||.||..||.+||.. .+.||+|+..|..+.-
T Consensus 44 ~~~~FdCNICLd~akd---PVvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~v 99 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD---PVVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTV 99 (230)
T ss_pred CCCceeeeeeccccCC---CEEee-cccceehHHHHHHHhhcCCCeeCCccccccccceE
Confidence 4578899999998665 44554 9999999999999986 3458999998876543
No 15
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.9e-08 Score=106.61 Aligned_cols=51 Identities=35% Similarity=0.908 Sum_probs=44.8
Q ss_pred CCCcccccccccccCCCc--eEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794 149 KGALECAVCLSEFEDDET--LRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT 200 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~--~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~ 200 (418)
..+..|+||++++..+.. ...+| |+|+||..|+..|++++++||.||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 357899999999988654 67788 9999999999999999999999999554
No 16
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.66 E-value=1.5e-08 Score=71.00 Aligned_cols=39 Identities=41% Similarity=1.109 Sum_probs=32.8
Q ss_pred cccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCc
Q 014794 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVC 195 (418)
Q Consensus 154 CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~C 195 (418)
|+||++.+.+ .+.+++ |||.|+.+||..|++.+.+||+|
T Consensus 1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence 8999998877 345676 99999999999999999899998
No 17
>PHA02926 zinc finger-like protein; Provisional
Probab=98.63 E-value=1.8e-08 Score=95.51 Aligned_cols=52 Identities=29% Similarity=0.830 Sum_probs=40.3
Q ss_pred CCCcccccccccccCC-----CceEecCCCCccccchhHHHHHhcC------CCCCCcccccC
Q 014794 149 KGALECAVCLSEFEDD-----ETLRLLPKCDHVFHPHCIDVWLASH------VTCPVCRANLT 200 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~-----~~~r~lp~C~H~FH~~CI~~WL~~~------~tCP~CR~~l~ 200 (418)
..+.+|+||++..-++ ....+|+.|+|.||..||..|...+ .+||+||..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 3568999999987432 1234676799999999999999753 35999998764
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.48 E-value=8.6e-08 Score=69.00 Aligned_cols=44 Identities=30% Similarity=0.944 Sum_probs=38.2
Q ss_pred ccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCccc
Q 014794 153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRA 197 (418)
Q Consensus 153 ~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~ 197 (418)
+|.||++.|.+.....+++ |||+|+..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 5999999996666777886 9999999999999866778999985
No 19
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=9.4e-08 Score=92.61 Aligned_cols=54 Identities=31% Similarity=0.703 Sum_probs=44.2
Q ss_pred CCCcccccccccccCCC-------ceEecCCCCccccchhHHHHHh--cCCCCCCcccccCCCC
Q 014794 149 KGALECAVCLSEFEDDE-------TLRLLPKCDHVFHPHCIDVWLA--SHVTCPVCRANLTPES 203 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~-------~~r~lp~C~H~FH~~CI~~WL~--~~~tCP~CR~~l~~~~ 203 (418)
.++..|+||-..+.... .+-.|. |+|+||..||.-|-. ++++||.|+..++.+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~r 284 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKR 284 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHhh
Confidence 46789999999987654 556676 999999999999964 5789999998887543
No 20
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.4e-08 Score=81.68 Aligned_cols=68 Identities=26% Similarity=0.531 Sum_probs=52.3
Q ss_pred hCCceeeecccccccCCCCccccccccccc-------------CCCceEecCCCCccccchhHHHHHhcCCCCCCccccc
Q 014794 133 SFPIFVYSAVKDLKIGKGALECAVCLSEFE-------------DDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL 199 (418)
Q Consensus 133 ~lP~~~y~~~~~~~~~~~~~~CaICl~~f~-------------~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l 199 (418)
.|...+++.+.-...+-..+.|+||...+. .++.......|+|.||..||..||+.+..||+|.++.
T Consensus 28 rF~lKKWnAvAlWaWDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 28 RFELKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred ceEEeeeeeeeeeeeeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 455566677666666667889999988763 2344555557999999999999999999999998876
Q ss_pred C
Q 014794 200 T 200 (418)
Q Consensus 200 ~ 200 (418)
.
T Consensus 108 ~ 108 (114)
T KOG2930|consen 108 V 108 (114)
T ss_pred e
Confidence 4
No 21
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3.6e-08 Score=78.48 Aligned_cols=64 Identities=31% Similarity=0.644 Sum_probs=47.7
Q ss_pred eeeecccccccCCCCcccccccccccC---------CCceEecCCCCccccchhHHHHHhc---CCCCCCcccccC
Q 014794 137 FVYSAVKDLKIGKGALECAVCLSEFED---------DETLRLLPKCDHVFHPHCIDVWLAS---HVTCPVCRANLT 200 (418)
Q Consensus 137 ~~y~~~~~~~~~~~~~~CaICl~~f~~---------~~~~r~lp~C~H~FH~~CI~~WL~~---~~tCP~CR~~l~ 200 (418)
..|..+........++.|-||.-.|.. ++...++-.|.|.||..||.+|+.. +..||+||+...
T Consensus 6 ~~~h~~a~wtW~~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 6 KRYHAVAWWTWDAPDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred EEEEEEEEEEEcCCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 345555555555667799999999973 2333345579999999999999975 557999999764
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.43 E-value=1.5e-07 Score=63.52 Aligned_cols=38 Identities=45% Similarity=1.188 Sum_probs=32.2
Q ss_pred cccccccccCCCceEecCCCCccccchhHHHHHh-cCCCCCCc
Q 014794 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLA-SHVTCPVC 195 (418)
Q Consensus 154 CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~-~~~tCP~C 195 (418)
|+||++.. .....++ |+|.||..|++.|+. .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence 78999883 3466777 999999999999998 56789998
No 23
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.42 E-value=2.1e-07 Score=71.01 Aligned_cols=46 Identities=33% Similarity=0.600 Sum_probs=40.0
Q ss_pred cccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP 201 (418)
Q Consensus 152 ~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~ 201 (418)
..|+||.+.+.+. .+++ |||+|+..||..|+..+.+||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 4699999998873 5566 99999999999999999999999987743
No 24
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.40 E-value=1.4e-07 Score=66.29 Aligned_cols=39 Identities=49% Similarity=1.232 Sum_probs=33.3
Q ss_pred cccccccccCCCceEecCCCCccccchhHHHHHh--cCCCCCCc
Q 014794 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLA--SHVTCPVC 195 (418)
Q Consensus 154 CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~--~~~tCP~C 195 (418)
|+||++.+.... .+++ |+|.|+..||..|+. ....||+|
T Consensus 1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999987743 4676 999999999999999 46679998
No 25
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.33 E-value=3.4e-07 Score=65.50 Aligned_cols=38 Identities=37% Similarity=0.964 Sum_probs=29.4
Q ss_pred cccccccccCCCceEecCCCCccccchhHHHHHhcC----CCCCCc
Q 014794 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH----VTCPVC 195 (418)
Q Consensus 154 CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~----~tCP~C 195 (418)
|+||++-|.+ .+.++ |||.|+..||..|.+.. ..||.|
T Consensus 1 CpiC~~~~~~---Pv~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD---PVSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS---EEE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC---ccccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999998 56676 99999999999999863 469988
No 26
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.29 E-value=4e-07 Score=93.99 Aligned_cols=49 Identities=33% Similarity=0.722 Sum_probs=42.0
Q ss_pred CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP 201 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~ 201 (418)
.....|+||++.|.. .++++ |+|.||..||..|+..+..||+|+..+..
T Consensus 24 e~~l~C~IC~d~~~~---Pvitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDV---PVLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhC---ccCCC-CCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 367799999999876 34566 99999999999999998899999998754
No 27
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.7e-06 Score=89.86 Aligned_cols=51 Identities=33% Similarity=0.987 Sum_probs=39.7
Q ss_pred CCcccccccccccCC---C-----------ceEecCCCCccccchhHHHHHhc-CCCCCCcccccCC
Q 014794 150 GALECAVCLSEFEDD---E-----------TLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTP 201 (418)
Q Consensus 150 ~~~~CaICl~~f~~~---~-----------~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~ 201 (418)
....|+||+..+.-- . ...+.| |.|+||..|+..|+.. +-.||+||.++.+
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 456899999997521 1 123457 9999999999999995 5589999998864
No 28
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=1.4e-06 Score=84.44 Aligned_cols=52 Identities=33% Similarity=0.793 Sum_probs=42.4
Q ss_pred CCCcccccccccccCCCceEecCCCCccccchhHHH-HHhcCCC-CCCcccccCCCCc
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDV-WLASHVT-CPVCRANLTPESN 204 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~-WL~~~~t-CP~CR~~l~~~~~ 204 (418)
..+..|+||++.... ...+| |||+||..||.. |-.++.- ||+||+.+.+++.
T Consensus 213 ~~d~kC~lC~e~~~~---ps~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEV---PSCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCC---ccccc-ccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence 357899999998665 45566 999999999999 9777665 9999998876543
No 29
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.04 E-value=1e-06 Score=96.83 Aligned_cols=52 Identities=35% Similarity=0.863 Sum_probs=40.2
Q ss_pred CCCcccccccccccCCC---ceEecCCCCccccchhHHHHHhc--CCCCCCcccccC
Q 014794 149 KGALECAVCLSEFEDDE---TLRLLPKCDHVFHPHCIDVWLAS--HVTCPVCRANLT 200 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~---~~r~lp~C~H~FH~~CI~~WL~~--~~tCP~CR~~l~ 200 (418)
++..+||||+..+..-+ .-...+.|.|.||..|+..|+.+ +.+||+||..+.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 37789999998876211 11234569999999999999987 668999998764
No 30
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.96 E-value=5.3e-06 Score=61.31 Aligned_cols=42 Identities=29% Similarity=0.895 Sum_probs=32.6
Q ss_pred ccccccccccCCCceEecCCCC-----ccccchhHHHHHhc--CCCCCCcc
Q 014794 153 ECAVCLSEFEDDETLRLLPKCD-----HVFHPHCIDVWLAS--HVTCPVCR 196 (418)
Q Consensus 153 ~CaICl~~f~~~~~~r~lp~C~-----H~FH~~CI~~WL~~--~~tCP~CR 196 (418)
.|.||++. .+++...+.| |. |.+|..|+..|+.. +.+||+|.
T Consensus 1 ~CrIC~~~-~~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999993 3444455778 85 89999999999976 44899995
No 31
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=6.7e-06 Score=86.16 Aligned_cols=52 Identities=25% Similarity=0.616 Sum_probs=40.1
Q ss_pred CcccccccccccCCCceEecCCCCccccchhHHHHHhc-----CCCCCCcccccCCCCccc
Q 014794 151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-----HVTCPVCRANLTPESNEK 206 (418)
Q Consensus 151 ~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-----~~tCP~CR~~l~~~~~~~ 206 (418)
+..|+|||+..... ..+ .|||+||..||.+++.. ...||+||..|...+-..
T Consensus 186 ~~~CPICL~~~~~p---~~t-~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~p 242 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRT-NCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLP 242 (513)
T ss_pred CCcCCcccCCCCcc---ccc-ccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceee
Confidence 77899999986542 233 49999999999998764 457999999887654433
No 32
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.85 E-value=4.2e-06 Score=66.33 Aligned_cols=50 Identities=34% Similarity=0.786 Sum_probs=23.8
Q ss_pred Cccccccccccc-CCCc-eEec--CCCCccccchhHHHHHhc----C-------CCCCCcccccC
Q 014794 151 ALECAVCLSEFE-DDET-LRLL--PKCDHVFHPHCIDVWLAS----H-------VTCPVCRANLT 200 (418)
Q Consensus 151 ~~~CaICl~~f~-~~~~-~r~l--p~C~H~FH~~CI~~WL~~----~-------~tCP~CR~~l~ 200 (418)
+.+|.||+..+. .++. ..+- ++|++.||..||..||.. + .+||.|+.+|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 358999999876 3322 2233 269999999999999974 1 14999998875
No 33
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.81 E-value=6.6e-06 Score=84.87 Aligned_cols=48 Identities=31% Similarity=0.800 Sum_probs=39.6
Q ss_pred CCcccccccccccCCC-ceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794 150 GALECAVCLSEFEDDE-TLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT 200 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~-~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~ 200 (418)
+..+|+|||+.+.+.. .++... |.|.||..|+..| ...+||+||....
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeee-cccccchHHHhhc--ccCcChhhhhhcC
Confidence 5679999999998765 344454 9999999999999 5678999998665
No 34
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.80 E-value=1.1e-05 Score=64.13 Aligned_cols=48 Identities=25% Similarity=0.474 Sum_probs=37.7
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCcccccCC
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTP 201 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~ 201 (418)
+...|+||.+-|.+ .+++| |||.|...||..|+.. +.+||+|+.++..
T Consensus 3 ~~f~CpIt~~lM~d---PVi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRD---PVILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SS---EEEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhC---ceeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 35689999999988 66777 9999999999999999 8899999988764
No 35
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.76 E-value=1.6e-05 Score=57.27 Aligned_cols=38 Identities=34% Similarity=0.907 Sum_probs=22.7
Q ss_pred cccccccccCCC-ceEecCCCCccccchhHHHHHhcC----CCCC
Q 014794 154 CAVCLSEFEDDE-TLRLLPKCDHVFHPHCIDVWLASH----VTCP 193 (418)
Q Consensus 154 CaICl~~f~~~~-~~r~lp~C~H~FH~~CI~~WL~~~----~tCP 193 (418)
|+||.+ |...+ ..++|+ |||+|+.+||..++... .+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 75544 567898 99999999999999853 3577
No 36
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=9.6e-06 Score=76.91 Aligned_cols=44 Identities=39% Similarity=0.942 Sum_probs=39.2
Q ss_pred CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcc
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCR 196 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR 196 (418)
.+...|+||++.|... .++| |+|.||..||..+......||.||
T Consensus 11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccC
Confidence 3678999999999997 6787 999999999999988566899999
No 37
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.74 E-value=2.1e-05 Score=78.65 Aligned_cols=51 Identities=22% Similarity=0.542 Sum_probs=37.5
Q ss_pred CcccccccccccCCC--ceEecCCCCccccchhHHHHHhc-CCCCCCcccccCCC
Q 014794 151 ALECAVCLSEFEDDE--TLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTPE 202 (418)
Q Consensus 151 ~~~CaICl~~f~~~~--~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~~ 202 (418)
+..|+||...--... .+.+.+ |||.||..||+..+.. ...||.|+..+...
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 468999999633222 333444 9999999999996544 56899999887644
No 38
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=1.4e-05 Score=81.23 Aligned_cols=46 Identities=30% Similarity=0.950 Sum_probs=34.8
Q ss_pred CcccccccccccCCCceEecCCCCccccchhHHHHHhc---CCCCCCcc
Q 014794 151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS---HVTCPVCR 196 (418)
Q Consensus 151 ~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~---~~tCP~CR 196 (418)
..+|.||-+-+.....+.-+..|||+||..|+.+|++. +.+||+|+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 34799994444444445444459999999999999996 45899999
No 39
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=3e-05 Score=78.28 Aligned_cols=49 Identities=33% Similarity=0.760 Sum_probs=41.7
Q ss_pred CCCcccccccccccCCCceEecCCCCc-cccchhHHHHHhcCCCCCCcccccCC
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDH-VFHPHCIDVWLASHVTCPVCRANLTP 201 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H-~FH~~CI~~WL~~~~tCP~CR~~l~~ 201 (418)
+...+|.|||.+-.+ +.+|| |-| ..|..|.+..--+++.||+||+++..
T Consensus 288 ~~gkeCVIClse~rd---t~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcc---eEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 346799999999776 77899 999 68899999977778899999998864
No 40
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.59 E-value=2.6e-05 Score=76.69 Aligned_cols=47 Identities=30% Similarity=0.642 Sum_probs=39.8
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT 200 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~ 200 (418)
.-+.|-||-+-|.. ..+.+ |||.||.-||...|..+..||+||.+..
T Consensus 24 s~lrC~IC~~~i~i---p~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 24 SMLRCRICDCRISI---PCETT-CGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred hHHHhhhhhheeec---ceecc-cccchhHHHHHHHhcCCCCCccccccHH
Confidence 56689999888775 33455 9999999999999999999999998653
No 41
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.58 E-value=1.8e-05 Score=79.15 Aligned_cols=48 Identities=31% Similarity=0.782 Sum_probs=42.6
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP 201 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~ 201 (418)
.-..|-||.+-|.. ..++| |+|.||.-||...|..+..||.|+..+.+
T Consensus 22 ~lLRC~IC~eyf~i---p~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 22 DLLRCGICFEYFNI---PMITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHhHHHHHhcC---ceecc-ccchHHHHHHHHHhccCCCCCceecccch
Confidence 56689999999887 56677 99999999999999999999999988754
No 42
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.39 E-value=8.6e-05 Score=75.78 Aligned_cols=51 Identities=25% Similarity=0.725 Sum_probs=40.7
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHHhc--CCCCCCcccccCCCCc
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS--HVTCPVCRANLTPESN 204 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~--~~tCP~CR~~l~~~~~ 204 (418)
.-.-|.||-+.-+ .+++-| |||..|..|+..|-.. .++||.||..+.-.+.
T Consensus 368 TFeLCKICaendK---dvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 368 TFELCKICAENDK---DVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred hHHHHHHhhccCC---Cccccc-ccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 3456999987644 488888 9999999999999854 5789999999865443
No 43
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=7.9e-05 Score=75.82 Aligned_cols=51 Identities=29% Similarity=0.881 Sum_probs=40.2
Q ss_pred CCcccccccccccCCC----ceEecCCCCccccchhHHHHHh--c-----CCCCCCcccccC
Q 014794 150 GALECAVCLSEFEDDE----TLRLLPKCDHVFHPHCIDVWLA--S-----HVTCPVCRANLT 200 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~----~~r~lp~C~H~FH~~CI~~WL~--~-----~~tCP~CR~~l~ 200 (418)
.+.+|.||++...+.. ...++|.|.|.||..||..|-. + ...||.||....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 5679999999976643 2345788999999999999983 3 467999997553
No 44
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.38 E-value=5.4e-05 Score=74.75 Aligned_cols=53 Identities=30% Similarity=0.766 Sum_probs=44.0
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHHh------------------c-----CCCCCCcccccCCCC
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLA------------------S-----HVTCPVCRANLTPES 203 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~------------------~-----~~tCP~CR~~l~~~~ 203 (418)
....|.|||..|.+++...+++ |.|.||..|+..+|. . +..||+||..|..+.
T Consensus 114 p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~ 189 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEE 189 (368)
T ss_pred CCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccc
Confidence 4568999999999999888887 999999999998773 1 235999999886543
No 45
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00016 Score=68.93 Aligned_cols=60 Identities=27% Similarity=0.604 Sum_probs=50.0
Q ss_pred CCCcccccccccccCCCceEecCCCCccccchhHHHHHhc--------CCCCCCcccccCCCCccccccc
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS--------HVTCPVCRANLTPESNEKVKLC 210 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~--------~~tCP~CR~~l~~~~~~~~~~~ 210 (418)
+....|..|-..+..++.+|+. |.|.||.+|+++|-.. ...||.|-.+|+++.....++.
T Consensus 48 DY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPva 115 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSPVA 115 (299)
T ss_pred CCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccchhH
Confidence 4667899999999999999884 9999999999999864 3469999999997766555443
No 46
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=3.2e-05 Score=77.83 Aligned_cols=50 Identities=32% Similarity=0.584 Sum_probs=42.1
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCcccccCCC
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTPE 202 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~~ 202 (418)
.+..|.|||+-++. .+..+.|.|-||.+||..-+.. ++.||.||+.+...
T Consensus 42 ~~v~c~icl~llk~---tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 42 IQVICPICLSLLKK---TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhccHHHHHHHHh---hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 57789999999876 3445579999999999998876 78999999988754
No 47
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.24 E-value=5.7e-05 Score=82.30 Aligned_cols=49 Identities=27% Similarity=0.541 Sum_probs=40.2
Q ss_pred CcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794 151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT 200 (418)
Q Consensus 151 ~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~ 200 (418)
...|++|+..+.+.......+ |+|.||..||+.|-..-.+||+||..+.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhh
Confidence 446888888877765554555 9999999999999999999999998664
No 48
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00022 Score=70.69 Aligned_cols=48 Identities=29% Similarity=0.467 Sum_probs=38.5
Q ss_pred CcccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCcccccCCC
Q 014794 151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTPE 202 (418)
Q Consensus 151 ~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~~ 202 (418)
..+|+||+....- ...++ |+|.||..||.--... ..+|++||.++...
T Consensus 7 ~~eC~IC~nt~n~---Pv~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNC---PVNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCc---Ccccc-ccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 4589999987554 35566 9999999999987665 55799999999754
No 49
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.08 E-value=0.00021 Score=55.61 Aligned_cols=47 Identities=30% Similarity=0.764 Sum_probs=23.8
Q ss_pred CcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794 151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE 202 (418)
Q Consensus 151 ~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~ 202 (418)
...|++|.+-++.. ..+..|.|+|+..||..-+.. .||+|+.+.-.+
T Consensus 7 lLrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~q 53 (65)
T PF14835_consen 7 LLRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQ 53 (65)
T ss_dssp TTS-SSS-S--SS----B---SSS--B-TTTGGGGTTT--B-SSS--B-S-S
T ss_pred hcCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcCC--CCCCcCChHHHH
Confidence 45799999988763 334469999999999885543 499998876543
No 50
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.00035 Score=71.67 Aligned_cols=50 Identities=26% Similarity=0.830 Sum_probs=38.4
Q ss_pred CCcccccccccccC-CCceEecCCCCccccchhHHHHHhc--CCCCCCccccc
Q 014794 150 GALECAVCLSEFED-DETLRLLPKCDHVFHPHCIDVWLAS--HVTCPVCRANL 199 (418)
Q Consensus 150 ~~~~CaICl~~f~~-~~~~r~lp~C~H~FH~~CI~~WL~~--~~tCP~CR~~l 199 (418)
....|+|||+.+.- ++...+.+.|+|.|-.+||+.||-+ ...||.|...-
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 45689999999874 4444455569999999999999964 33599996543
No 51
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.00022 Score=78.01 Aligned_cols=51 Identities=31% Similarity=0.812 Sum_probs=40.5
Q ss_pred CCCcccccccccccCCCceEecCCCCccccchhHHHHHhc-CCCCCCcccccCCCC
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTPES 203 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~~~ 203 (418)
++-..|++|-...++ . ++++|+|+||..||..-+.. +..||.|-..+.+.+
T Consensus 641 K~~LkCs~Cn~R~Kd---~-vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganD 692 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKD---A-VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAND 692 (698)
T ss_pred HhceeCCCccCchhh---H-HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccc
Confidence 467899999876555 3 34479999999999999875 778999988776544
No 52
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.00066 Score=51.17 Aligned_cols=46 Identities=33% Similarity=0.663 Sum_probs=32.0
Q ss_pred CcccccccccccCCCceEecCCCCcc-ccchhHH-HHHhcCCCCCCcccccC
Q 014794 151 ALECAVCLSEFEDDETLRLLPKCDHV-FHPHCID-VWLASHVTCPVCRANLT 200 (418)
Q Consensus 151 ~~~CaICl~~f~~~~~~r~lp~C~H~-FH~~CI~-~WL~~~~tCP~CR~~l~ 200 (418)
.+||.||++.-.+ .+ +..|||. .+.+|-. .|-..+..||+||+++.
T Consensus 7 ~dECTICye~pvd--sV--lYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVD--SV--LYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcch--HH--HHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 4799999987443 22 2349995 5566644 44446889999999774
No 53
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.0018 Score=67.28 Aligned_cols=49 Identities=33% Similarity=0.783 Sum_probs=41.9
Q ss_pred CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP 201 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~ 201 (418)
..+.+|.||+..+.. ...+| |||.||..||+.-+....-||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~---pv~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP---PVVTP-CGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCC---Ccccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence 467899999888877 45567 99999999999977777789999998875
No 54
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.36 E-value=0.0019 Score=67.11 Aligned_cols=52 Identities=35% Similarity=0.730 Sum_probs=43.2
Q ss_pred CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCCC
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPES 203 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~~ 203 (418)
++...|++|...+.+.-.. . .|+|.||..|+..|+..+..||.|+..+....
T Consensus 19 ~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred cccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhh
Confidence 3668899999998885432 3 49999999999999999999999998876443
No 55
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.29 E-value=0.0018 Score=57.58 Aligned_cols=47 Identities=17% Similarity=0.517 Sum_probs=36.8
Q ss_pred CCcccccccccccCCCceEecCCCC------ccccchhHHHHHhcCCCCCCccc
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCD------HVFHPHCIDVWLASHVTCPVCRA 197 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~------H~FH~~CI~~WL~~~~tCP~CR~ 197 (418)
...||+||++.+..++.++.++ |+ |+||.+|+..|-..+..=|.=|.
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR~ 77 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWRRERNRDPFNRN 77 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHHhhccCCCcccc
Confidence 4679999999999966777777 76 99999999999554555555543
No 56
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.22 E-value=0.0048 Score=63.26 Aligned_cols=47 Identities=36% Similarity=0.849 Sum_probs=39.1
Q ss_pred CCcccccccccccCC-CceEecCCCCccccchhHHHHHhcC--CCCCCccc
Q 014794 150 GALECAVCLSEFEDD-ETLRLLPKCDHVFHPHCIDVWLASH--VTCPVCRA 197 (418)
Q Consensus 150 ~~~~CaICl~~f~~~-~~~r~lp~C~H~FH~~CI~~WL~~~--~tCP~CR~ 197 (418)
-+..|..|-+.+-.. +.+.-|| |.|+||..|+...|+++ .+||.||+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 456799999888654 4567788 99999999999999875 57999994
No 57
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.18 E-value=0.0025 Score=48.65 Aligned_cols=42 Identities=33% Similarity=0.704 Sum_probs=27.2
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHHhc--CCCCCC
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS--HVTCPV 194 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~--~~tCP~ 194 (418)
-...|+|.+..|++. ++-. +|+|+|-.+.|.+||.. ...||+
T Consensus 10 ~~~~CPiT~~~~~~P--V~s~-~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDP--VKSK-KCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSE--EEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCC--cCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence 457899999998873 3333 59999999999999944 446998
No 58
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.62 E-value=0.0048 Score=65.31 Aligned_cols=49 Identities=41% Similarity=0.836 Sum_probs=38.8
Q ss_pred CCCcccccccccccCCCceEecCCCCccccchhHHHHHhc-----CCCCCCcccccCC
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-----HVTCPVCRANLTP 201 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-----~~tCP~CR~~l~~ 201 (418)
.+..+|.+|.++-++ .... .|.|.||..||.++... +.+||+|...+..
T Consensus 534 k~~~~C~lc~d~aed---~i~s-~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 534 KGEVECGLCHDPAED---YIES-SCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred cCceeecccCChhhh---hHhh-hhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 567899999988555 3344 49999999999999864 6789999876653
No 59
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.0047 Score=56.42 Aligned_cols=30 Identities=33% Similarity=0.827 Sum_probs=27.4
Q ss_pred CCCcccccccccccCCCceEecCCCCccccc
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHP 179 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~ 179 (418)
+...||.||||+++.++++..|| |-.+||+
T Consensus 175 ddkGECvICLEdL~~GdtIARLP-CLCIYHK 204 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLP-CLCIYHK 204 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence 35679999999999999999999 9999996
No 60
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.40 E-value=0.0075 Score=66.95 Aligned_cols=50 Identities=30% Similarity=0.744 Sum_probs=40.2
Q ss_pred CCCcccccccccccCCCceEecCCCCccccchhHHHHHhc-------CCCCCCcccc
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-------HVTCPVCRAN 198 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-------~~tCP~CR~~ 198 (418)
...++|.||++.+.....+---..|.|+||..||..|-.+ ...||.|+..
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 4778999999999887766444469999999999999764 2369999843
No 61
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.11 E-value=0.013 Score=67.99 Aligned_cols=51 Identities=25% Similarity=0.714 Sum_probs=41.4
Q ss_pred CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcC----------CCCCCcccccC
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH----------VTCPVCRANLT 200 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~----------~tCP~CR~~l~ 200 (418)
+.++.|-||..+-........|. |+|+||.+|...-|+.. -.||+|..++.
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 47889999999877766677786 99999999998877642 26999998774
No 62
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.012 Score=59.90 Aligned_cols=45 Identities=33% Similarity=0.683 Sum_probs=33.7
Q ss_pred CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT 200 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~ 200 (418)
...+.|.||+++.++ ...+| |||+=| |...- +...+||+||+.+.
T Consensus 303 ~~p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence 356789999999777 67788 999944 76664 33445999998774
No 63
>PHA02862 5L protein; Provisional
Probab=95.06 E-value=0.015 Score=52.35 Aligned_cols=48 Identities=19% Similarity=0.550 Sum_probs=35.3
Q ss_pred cccccccccccCCCceEecC-CC---CccccchhHHHHHhc--CCCCCCcccccCCCC
Q 014794 152 LECAVCLSEFEDDETLRLLP-KC---DHVFHPHCIDVWLAS--HVTCPVCRANLTPES 203 (418)
Q Consensus 152 ~~CaICl~~f~~~~~~r~lp-~C---~H~FH~~CI~~WL~~--~~tCP~CR~~l~~~~ 203 (418)
+.|-||+++-.+. . -| .| ...-|++|+.+|+.. +..||+|+.++....
T Consensus 3 diCWIC~~~~~e~--~--~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~ 56 (156)
T PHA02862 3 DICWICNDVCDER--N--NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKK 56 (156)
T ss_pred CEEEEecCcCCCC--c--ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence 5799999985432 2 34 23 367899999999975 557999999886443
No 64
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=94.97 E-value=0.021 Score=41.80 Aligned_cols=40 Identities=35% Similarity=1.034 Sum_probs=27.3
Q ss_pred cccccccccCCCceEecCCCC-----ccccchhHHHHHhc--CCCCCCc
Q 014794 154 CAVCLSEFEDDETLRLLPKCD-----HVFHPHCIDVWLAS--HVTCPVC 195 (418)
Q Consensus 154 CaICl~~f~~~~~~r~lp~C~-----H~FH~~CI~~WL~~--~~tCP~C 195 (418)
|-||+++-.+++.+ +.| |. -..|..|+..|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~~l-i~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPL-ISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-E-E-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCce-ecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 77999987766633 455 54 37899999999985 5679988
No 65
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.96 E-value=0.0058 Score=61.45 Aligned_cols=50 Identities=26% Similarity=0.603 Sum_probs=41.0
Q ss_pred CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP 201 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~ 201 (418)
....+|.+|-.=|.+...+ . .|-|.||..||...|+...+||.|...+..
T Consensus 13 n~~itC~LC~GYliDATTI--~-eCLHTFCkSCivk~l~~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTI--T-ECLHTFCKSCIVKYLEESKYCPTCDIVIHK 62 (331)
T ss_pred ccceehhhccceeecchhH--H-HHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence 3677899998777765443 2 499999999999999999999999876653
No 66
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.033 Score=56.16 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=37.6
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCccccc
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL 199 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l 199 (418)
....|+||+.....+..+. .-|-+||..||-.++..+..||+=-.+.
T Consensus 299 ~~~~CpvClk~r~Nptvl~---vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 299 DREVCPVCLKKRQNPTVLE---VSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred ccccChhHHhccCCCceEE---ecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 4568999999977654332 2799999999999999999999865544
No 67
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.71 E-value=0.018 Score=59.58 Aligned_cols=49 Identities=24% Similarity=0.762 Sum_probs=40.3
Q ss_pred CCCcccccccccccCCCceEecCCCCccccchhHHHHHhc--------CCCCCCcccc
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS--------HVTCPVCRAN 198 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~--------~~tCP~CR~~ 198 (418)
.....|.||+++....+....+| |+|+||..|+..++.. .-.||-|...
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hhcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 35678999999988878899999 9999999999999874 2358777543
No 68
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.03 Score=55.20 Aligned_cols=51 Identities=27% Similarity=0.527 Sum_probs=37.8
Q ss_pred cCCCCcccccccccccCCCceEecCCCCccccchhHHHHHhc--CCCCCCcccccC
Q 014794 147 IGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS--HVTCPVCRANLT 200 (418)
Q Consensus 147 ~~~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~--~~tCP~CR~~l~ 200 (418)
.+..+.+|++|-+.=.. .....+ |+|+||.-||..=+.. ..+||.|-.++.
T Consensus 235 ~~t~~~~C~~Cg~~Pti--P~~~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 235 TGTSDTECPVCGEPPTI--PHVIGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cccCCceeeccCCCCCC--Ceeecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 34567899999876332 333444 9999999999987664 478999987765
No 69
>PHA03096 p28-like protein; Provisional
Probab=94.63 E-value=0.015 Score=58.05 Aligned_cols=46 Identities=26% Similarity=0.611 Sum_probs=34.9
Q ss_pred cccccccccccCCC----ceEecCCCCccccchhHHHHHhc---CCCCCCccc
Q 014794 152 LECAVCLSEFEDDE----TLRLLPKCDHVFHPHCIDVWLAS---HVTCPVCRA 197 (418)
Q Consensus 152 ~~CaICl~~f~~~~----~~r~lp~C~H~FH~~CI~~WL~~---~~tCP~CR~ 197 (418)
-+|.||++...... .--+|+.|.|.|+..||..|-.. ..+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 57999999977542 33468899999999999999864 335666654
No 70
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=94.45 E-value=0.02 Score=47.67 Aligned_cols=32 Identities=31% Similarity=0.809 Sum_probs=26.3
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHH
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCID 183 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~ 183 (418)
+...|++|-..+.. ....+-| |||+||..|+.
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p-~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFP-CGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeC-CCeEEeccccc
Confidence 45679999999877 4566677 99999999975
No 71
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=0.041 Score=53.50 Aligned_cols=54 Identities=17% Similarity=0.330 Sum_probs=47.6
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCCC
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPES 203 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~~ 203 (418)
..+.|+||.+.+.....+.+|..|||+|+.+|+...+.....||+|-.++...+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 567899999999988878777779999999999999999999999988886544
No 72
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.042 Score=55.87 Aligned_cols=49 Identities=20% Similarity=0.465 Sum_probs=40.9
Q ss_pred CCCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794 148 GKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT 200 (418)
Q Consensus 148 ~~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~ 200 (418)
..++..|+||+.. .......| |+|.=|..||.+-|...+.|=.|+..+.
T Consensus 419 ~sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 419 DSEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CcccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceee
Confidence 3578899999865 22355677 9999999999999999999999998775
No 73
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=93.84 E-value=0.044 Score=50.09 Aligned_cols=50 Identities=18% Similarity=0.619 Sum_probs=36.2
Q ss_pred CCCcccccccccccCCCceEecC-CCCc---cccchhHHHHHhc--CCCCCCcccccCCC
Q 014794 149 KGALECAVCLSEFEDDETLRLLP-KCDH---VFHPHCIDVWLAS--HVTCPVCRANLTPE 202 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp-~C~H---~FH~~CI~~WL~~--~~tCP~CR~~l~~~ 202 (418)
..+.+|-||.++-.+ .. -| +|.. .-|.+|+..|+.. ..+|++|.++....
T Consensus 6 ~~~~~CRIC~~~~~~--~~--~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYDV--VT--NYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCCC--cc--CCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 356789999988432 22 34 3444 5699999999986 45799999987544
No 74
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=93.63 E-value=0.029 Score=52.99 Aligned_cols=46 Identities=22% Similarity=0.497 Sum_probs=38.1
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCccccc
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL 199 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l 199 (418)
-...|.||-.+|+. .++. .|||.||..|...=++....|-+|-+..
T Consensus 195 IPF~C~iCKkdy~s---pvvt-~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 195 IPFLCGICKKDYES---PVVT-ECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred Cceeehhchhhccc---hhhh-hcchhHHHHHHHHHhccCCcceecchhh
Confidence 45689999999987 3344 4999999999999888889999997644
No 75
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.45 E-value=0.036 Score=55.24 Aligned_cols=46 Identities=33% Similarity=0.795 Sum_probs=35.0
Q ss_pred cccccccccccCCCceEecCCCCccccchhHHHHHh-cCCCCCCc-ccccC
Q 014794 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLA-SHVTCPVC-RANLT 200 (418)
Q Consensus 152 ~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~-~~~tCP~C-R~~l~ 200 (418)
..|+.|..-+... + ..|.|+|.||.+||..-|. ....||.| |+++.
T Consensus 275 LkCplc~~Llrnp--~-kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvl 322 (427)
T COG5222 275 LKCPLCHCLLRNP--M-KTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVL 322 (427)
T ss_pred ccCcchhhhhhCc--c-cCccccchHHHHHHhhhhhhccccCCCcccccch
Confidence 6899998776653 2 2367999999999997765 57899999 44554
No 76
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.05 Score=50.61 Aligned_cols=31 Identities=29% Similarity=0.861 Sum_probs=25.0
Q ss_pred CCCccccchhHHHHHhc-----C------CCCCCcccccCCC
Q 014794 172 KCDHVFHPHCIDVWLAS-----H------VTCPVCRANLTPE 202 (418)
Q Consensus 172 ~C~H~FH~~CI~~WL~~-----~------~tCP~CR~~l~~~ 202 (418)
.||.-||+-|+..||.. + ..||.|-.++..+
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 49999999999999974 1 2599998887643
No 77
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.34 E-value=0.056 Score=39.94 Aligned_cols=45 Identities=22% Similarity=0.580 Sum_probs=21.8
Q ss_pred cccccccccCCC-ceEecCCCCccccchhHHHHHh-cCCCCCCccccc
Q 014794 154 CAVCLSEFEDDE-TLRLLPKCDHVFHPHCIDVWLA-SHVTCPVCRANL 199 (418)
Q Consensus 154 CaICl~~f~~~~-~~r~lp~C~H~FH~~CI~~WL~-~~~tCP~CR~~l 199 (418)
|++|.+++...+ .+.-- .|++..+..|...-++ .+..||-||.+.
T Consensus 1 cp~C~e~~d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789999984433 33333 4888888888888776 477899999864
No 78
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.08 E-value=0.1 Score=51.35 Aligned_cols=53 Identities=28% Similarity=0.573 Sum_probs=41.6
Q ss_pred CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE 202 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~ 202 (418)
.....|+|+..+|........+-.|||+|...||..- .....||+|-.++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccC
Confidence 5678999999999766555555449999999999996 3356799998887643
No 79
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.42 E-value=0.087 Score=53.54 Aligned_cols=70 Identities=20% Similarity=0.430 Sum_probs=49.1
Q ss_pred CCCHHHHhhCCceeeecccccccCCCCcccccccccccCCCceEecCCCCccccchhHHHH--HhcCCCCCCcccccC
Q 014794 125 GLDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVW--LASHVTCPVCRANLT 200 (418)
Q Consensus 125 gl~~~~i~~lP~~~y~~~~~~~~~~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~W--L~~~~tCP~CR~~l~ 200 (418)
.-.+..+...|...-+...+. +++...|.||-..+.- ..++| |+|..|.-|-..- |..+..||+||....
T Consensus 37 kqkKNnlsaEPnlttsSaddt--DEen~~C~ICA~~~TY---s~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 37 KQKKNNLSAEPNLTTSSADDT--DEENMNCQICAGSTTY---SARYP-CGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred hccccccccCCcccccccccc--ccccceeEEecCCceE---EEecc-CCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 344455666676555544443 3466789999887654 56788 9999999997653 556889999998654
No 80
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.21 E-value=0.033 Score=55.35 Aligned_cols=42 Identities=29% Similarity=0.712 Sum_probs=29.9
Q ss_pred CcccccccccccCCCceEecCCCCccc-cchhHHHHHhcCCCCCCcccccC
Q 014794 151 ALECAVCLSEFEDDETLRLLPKCDHVF-HPHCIDVWLASHVTCPVCRANLT 200 (418)
Q Consensus 151 ~~~CaICl~~f~~~~~~r~lp~C~H~F-H~~CI~~WL~~~~tCP~CR~~l~ 200 (418)
..-|+||++.-.+ ...|+ |||.. |.+|-.. -..||+||+.+.
T Consensus 300 ~~LC~ICmDaP~D---CvfLe-CGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRD---CVFLE-CGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcc---eEEee-cCcEEeehhhccc----cccCchHHHHHH
Confidence 5679999998555 77887 99963 3445332 348999998663
No 81
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.04 E-value=0.066 Score=59.81 Aligned_cols=42 Identities=26% Similarity=0.752 Sum_probs=31.8
Q ss_pred cccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCccccc
Q 014794 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL 199 (418)
Q Consensus 152 ~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l 199 (418)
..|..|-..++.+-. -- .|+|.||++|+. .+...||-|+.++
T Consensus 841 skCs~C~~~LdlP~V--hF-~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFV--HF-LCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeecccCCcccccee--ee-ecccHHHHHhhc---cCcccCCccchhh
Confidence 589999888766432 22 399999999998 4567899998733
No 82
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.93 E-value=0.012 Score=60.42 Aligned_cols=51 Identities=22% Similarity=0.612 Sum_probs=43.7
Q ss_pred CCcccccccccccCC-CceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794 150 GALECAVCLSEFEDD-ETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP 201 (418)
Q Consensus 150 ~~~~CaICl~~f~~~-~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~ 201 (418)
-...|+||...++.. +.+..+- |+|.+|..||..||.....||.|+..+..
T Consensus 195 lv~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 195 LVGSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HHhhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 356799999999876 5666665 99999999999999999999999998863
No 83
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.90 E-value=0.057 Score=52.32 Aligned_cols=45 Identities=27% Similarity=0.703 Sum_probs=32.5
Q ss_pred ccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCC
Q 014794 153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTP 201 (418)
Q Consensus 153 ~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~ 201 (418)
.|-.|..- ..++...++. |.|+||..|...- ....||+|++++..
T Consensus 5 hCn~C~~~-~~~~~f~LTa-C~HvfC~~C~k~~--~~~~C~lCkk~ir~ 49 (233)
T KOG4739|consen 5 HCNKCFRF-PSQDPFFLTA-CRHVFCEPCLKAS--SPDVCPLCKKSIRI 49 (233)
T ss_pred Eecccccc-CCCCceeeee-chhhhhhhhcccC--Cccccccccceeee
Confidence 47767554 3366777775 9999999997763 22389999998753
No 84
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=0.12 Score=51.17 Aligned_cols=48 Identities=29% Similarity=0.809 Sum_probs=38.6
Q ss_pred CcccccccccccCCC---ceEecCCCCccccchhHHHHHhc-CCCCCCccccc
Q 014794 151 ALECAVCLSEFEDDE---TLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANL 199 (418)
Q Consensus 151 ~~~CaICl~~f~~~~---~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l 199 (418)
..+|-||-++|...+ ..++| +|||.|+..|+..-+.. ...||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCccc-ccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 468999999998764 34566 59999999999987765 44699999875
No 85
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.84 E-value=0.1 Score=52.03 Aligned_cols=46 Identities=24% Similarity=0.478 Sum_probs=38.4
Q ss_pred CcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794 151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT 200 (418)
Q Consensus 151 ~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~ 200 (418)
...|-||...|..+ ++. +|+|.||..|...=++....|++|-+...
T Consensus 241 Pf~c~icr~~f~~p---Vvt-~c~h~fc~~ca~~~~qk~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP---VVT-KCGHYFCEVCALKPYQKGEKCYVCSQQTH 286 (313)
T ss_pred Cccccccccccccc---hhh-cCCceeehhhhccccccCCcceecccccc
Confidence 45699999999873 334 59999999999988888899999977654
No 86
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=90.67 E-value=0.11 Score=37.28 Aligned_cols=41 Identities=20% Similarity=0.624 Sum_probs=23.5
Q ss_pred cccccccccCCCceEecCCCCccccchhHHHHHhcCC--CCCCc
Q 014794 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHV--TCPVC 195 (418)
Q Consensus 154 CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~--tCP~C 195 (418)
|.+|.+....+...... .|+=.+|..|+..++..+. .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 67777776666544322 4888999999999998755 79988
No 87
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=90.54 E-value=0.15 Score=51.81 Aligned_cols=52 Identities=17% Similarity=0.443 Sum_probs=37.8
Q ss_pred CCCcccccccccccCCCce-EecCCCCccccchhHHHHHhc-CCCCCCcccccCC
Q 014794 149 KGALECAVCLSEFEDDETL-RLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLTP 201 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~-r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~~ 201 (418)
++++.|+.|++++...++- .-.| ||-..|.-|...--+. +..||-||.....
T Consensus 12 deed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 3556699999999876643 3455 9988888886654333 6789999987754
No 88
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=89.15 E-value=0.24 Score=37.55 Aligned_cols=44 Identities=23% Similarity=0.537 Sum_probs=31.3
Q ss_pred ccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794 153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE 202 (418)
Q Consensus 153 ~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~ 202 (418)
.|..|... +.+-.++| |+|+.+..|.+-+ .-+-||+|-.++...
T Consensus 9 ~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~ 52 (55)
T PF14447_consen 9 PCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFD 52 (55)
T ss_pred eEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCC
Confidence 45555443 23345677 9999999998764 556799998888654
No 89
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=88.87 E-value=0.24 Score=36.72 Aligned_cols=20 Identities=25% Similarity=0.602 Sum_probs=16.9
Q ss_pred cccccccccccHHHHHHHHh
Q 014794 290 VSVERYTLRFPDEVRKQLMT 309 (418)
Q Consensus 290 ~~~eR~TLrlPe~v~~~~~~ 309 (418)
.+.++|+||||++++.+|-.
T Consensus 2 r~~~~f~lRlP~~l~~~lk~ 21 (50)
T PF03869_consen 2 RKDPQFNLRLPEELKEKLKE 21 (50)
T ss_dssp CCSEEEEEECEHHHHHHHHH
T ss_pred CCCCceeeECCHHHHHHHHH
Confidence 35789999999999988753
No 90
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=88.84 E-value=0.15 Score=56.68 Aligned_cols=47 Identities=23% Similarity=0.640 Sum_probs=36.6
Q ss_pred cccccccccccCCCceEecCCCCccccchhHHHHHhc--CCCCCCcccccCCCC
Q 014794 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS--HVTCPVCRANLTPES 203 (418)
Q Consensus 152 ~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~--~~tCP~CR~~l~~~~ 203 (418)
..|.||++ .+...+.+ |+|.||.+|+..-+.. ...||+||..+....
T Consensus 455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 78999999 33455565 9999999999988775 336999999776443
No 91
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=87.77 E-value=0.58 Score=35.42 Aligned_cols=35 Identities=26% Similarity=0.751 Sum_probs=30.9
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHH
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDV 184 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~ 184 (418)
....|.+|-+.|.+++.+++-|.|+-.+|..|.+.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 44579999999998899999999999999999654
No 92
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.58 E-value=0.23 Score=55.92 Aligned_cols=35 Identities=23% Similarity=0.545 Sum_probs=28.4
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHH
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWL 186 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL 186 (418)
.++.|.+|...+... ...+-| |||.||.+||..-.
T Consensus 816 p~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRHV 850 (911)
T ss_pred CccchHHhcchhhcC-cceeee-ccchHHHHHHHHHH
Confidence 678999999887764 445666 99999999998754
No 93
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.12 E-value=0.31 Score=54.03 Aligned_cols=23 Identities=35% Similarity=0.895 Sum_probs=21.3
Q ss_pred CCCccccchhHHHHHhcCCCCCC
Q 014794 172 KCDHVFHPHCIDVWLASHVTCPV 194 (418)
Q Consensus 172 ~C~H~FH~~CI~~WL~~~~tCP~ 194 (418)
.|+|+.|.+|..+|+.....||.
T Consensus 1047 ~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1047 TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred cccccccHHHHHHHHhcCCcCCC
Confidence 49999999999999999999984
No 94
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.77 E-value=0.42 Score=51.88 Aligned_cols=48 Identities=29% Similarity=0.841 Sum_probs=39.7
Q ss_pred CCCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCCC
Q 014794 148 GKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPES 203 (418)
Q Consensus 148 ~~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~~ 203 (418)
.+..+.|+||+.+. ..+..+ |. |..|+..|+..+..||+|+..+...+
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~-~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITP-CS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred hcccCcchHHHHHH----Hhcccc-cc---chhHHHhhhhhccccCCCchhhhccc
Confidence 34677899999998 456666 88 89999999999999999998876544
No 95
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=85.64 E-value=0.25 Score=57.56 Aligned_cols=45 Identities=27% Similarity=0.829 Sum_probs=37.2
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCccc
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRA 197 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~ 197 (418)
+...|.||++.+..-..+. .|+|.+|..|+..|+..+..||.|..
T Consensus 1152 ~~~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhh
Confidence 4558999999987432222 49999999999999999999999984
No 96
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=85.59 E-value=0.4 Score=47.72 Aligned_cols=47 Identities=23% Similarity=0.658 Sum_probs=38.5
Q ss_pred CCcccccccccccCCC-ceEecCCCCccccchhHHHHHhcCCCCCCccc
Q 014794 150 GALECAVCLSEFEDDE-TLRLLPKCDHVFHPHCIDVWLASHVTCPVCRA 197 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~-~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~ 197 (418)
....|+||.+.+-... .+..++ |+|.-|..|+......+.+||+|.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence 4455999999876655 345565 9999999999999888899999987
No 97
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=85.47 E-value=0.87 Score=41.76 Aligned_cols=35 Identities=26% Similarity=0.682 Sum_probs=20.6
Q ss_pred CcccccccccccCCCceEecC----------CCCcc-ccchhHHHHHh
Q 014794 151 ALECAVCLSEFEDDETLRLLP----------KCDHV-FHPHCIDVWLA 187 (418)
Q Consensus 151 ~~~CaICl~~f~~~~~~r~lp----------~C~H~-FH~~CI~~WL~ 187 (418)
+..|+|||+-=.. .+-++- -|+-. =|..|+++.-+
T Consensus 2 d~~CpICme~PHN--AVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHN--AVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCc--eEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 5689999987332 222110 15533 36789999763
No 98
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=84.82 E-value=0.6 Score=52.24 Aligned_cols=55 Identities=22% Similarity=0.542 Sum_probs=40.8
Q ss_pred CCCcccccccccccCCCceEecCCCC---ccccchhHHHHHhc--CCCCCCcccccCCCC
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCD---HVFHPHCIDVWLAS--HVTCPVCRANLTPES 203 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~---H~FH~~CI~~WL~~--~~tCP~CR~~l~~~~ 203 (418)
+++..|-||..+=..++.+.---+|. ...|.+|+.+|+.- ...|-+|..++.-++
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 45678999999877766664322343 46899999999985 457999999886543
No 99
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=84.27 E-value=1.3 Score=45.87 Aligned_cols=53 Identities=26% Similarity=0.663 Sum_probs=32.7
Q ss_pred CCCcccccccccccC-------------CCceEecCCC-----CccccchhHHHHHhc-------------CCCCCCccc
Q 014794 149 KGALECAVCLSEFED-------------DETLRLLPKC-----DHVFHPHCIDVWLAS-------------HVTCPVCRA 197 (418)
Q Consensus 149 ~~~~~CaICl~~f~~-------------~~~~r~lp~C-----~H~FH~~CI~~WL~~-------------~~tCP~CR~ 197 (418)
.+.+.|--|+..-.. +......+.| .-++|.+|+.+|+.+ +..||.||+
T Consensus 269 ~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa 348 (358)
T PF10272_consen 269 QELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRA 348 (358)
T ss_pred cccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcc
Confidence 466789999886332 1011111223 345678899999864 346999999
Q ss_pred ccCC
Q 014794 198 NLTP 201 (418)
Q Consensus 198 ~l~~ 201 (418)
....
T Consensus 349 ~FCi 352 (358)
T PF10272_consen 349 KFCI 352 (358)
T ss_pred ccee
Confidence 7653
No 100
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.58 E-value=0.31 Score=53.14 Aligned_cols=45 Identities=24% Similarity=0.599 Sum_probs=32.9
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCccc
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRA 197 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~ 197 (418)
....|.||+..|....-.-+-+.|||..|..|+..- -+.+|| |..
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~ 54 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKR 54 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCc
Confidence 345799999998765533333469999999998874 467888 644
No 101
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=81.48 E-value=0.54 Score=45.81 Aligned_cols=50 Identities=28% Similarity=0.588 Sum_probs=38.1
Q ss_pred CCccccccccccc--CCCceEecCCCCccccchhHHHHHhc-CCCCC--Cccccc
Q 014794 150 GALECAVCLSEFE--DDETLRLLPKCDHVFHPHCIDVWLAS-HVTCP--VCRANL 199 (418)
Q Consensus 150 ~~~~CaICl~~f~--~~~~~r~lp~C~H~FH~~CI~~WL~~-~~tCP--~CR~~l 199 (418)
.+..|+||-.+.- ++..+.+-|.|.|..|.+|++.-+.. ...|| -|-+-+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 4568999988743 34456667789999999999999876 56799 785533
No 102
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=80.65 E-value=0.68 Score=45.73 Aligned_cols=50 Identities=26% Similarity=0.778 Sum_probs=36.7
Q ss_pred CcccccccccccCCCc-eEecCCCC-----ccccchhHHHHHh--cCCCCCCcccccCC
Q 014794 151 ALECAVCLSEFEDDET-LRLLPKCD-----HVFHPHCIDVWLA--SHVTCPVCRANLTP 201 (418)
Q Consensus 151 ~~~CaICl~~f~~~~~-~r~lp~C~-----H~FH~~CI~~WL~--~~~tCP~CR~~l~~ 201 (418)
+..|-||..+...... ..+.| |. +..|..|++.|+. ....|.+|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 4689999998765432 33455 55 6779999999998 45679999886543
No 103
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=79.72 E-value=1.2 Score=39.22 Aligned_cols=15 Identities=7% Similarity=0.454 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 014794 81 IILVLISTFFIVAMF 95 (418)
Q Consensus 81 iiivlv~~~fil~~~ 95 (418)
+++|||++||+++++
T Consensus 4 l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 4 LFAIIIVAILLFLFL 18 (130)
T ss_pred eHHHHHHHHHHHHHH
Confidence 333434333333333
No 104
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=79.59 E-value=1 Score=45.43 Aligned_cols=43 Identities=30% Similarity=0.658 Sum_probs=29.5
Q ss_pred cccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCccccc
Q 014794 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL 199 (418)
Q Consensus 152 ~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l 199 (418)
-.|--|-..+.. .=|.+| |.|+||.+|... ..-+.||.|-..|
T Consensus 91 HfCd~Cd~PI~I--YGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFPIAI--YGRMIP-CKHVFCLECARS--DSDKICPLCDDRV 133 (389)
T ss_pred EeecccCCccee--eecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence 346667544332 346788 999999999654 3356899996655
No 105
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=78.37 E-value=1.5 Score=45.56 Aligned_cols=46 Identities=22% Similarity=0.509 Sum_probs=38.2
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHHhcC---CCCCCcc
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH---VTCPVCR 196 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~---~tCP~CR 196 (418)
....|+|-.+.-.+.+....|. |||+...+-|..-.... ..||+|=
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 4578999988888888888887 99999999999976653 4799993
No 106
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=78.19 E-value=1.5 Score=44.25 Aligned_cols=45 Identities=22% Similarity=0.518 Sum_probs=33.1
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccC
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLT 200 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~ 200 (418)
.-.+|+||.+.+..... .-+ =||.-|..|=. +....||.||.++.
T Consensus 47 ~lleCPvC~~~l~~Pi~--QC~-nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIF--QCD-NGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred hhccCchhhccCcccce--ecC-CCcEehhhhhh---hhcccCCccccccc
Confidence 56789999999887532 221 35777777754 46788999999886
No 107
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.91 E-value=1.7 Score=48.50 Aligned_cols=42 Identities=19% Similarity=0.391 Sum_probs=32.4
Q ss_pred CcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCC
Q 014794 151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPV 194 (418)
Q Consensus 151 ~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~ 194 (418)
...|.+|-..+.. .....+.|+|.-|.+|+..|+..+..||.
T Consensus 779 ~~~CtVC~~vi~G--~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 779 SAKCTVCDLVIRG--VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred hcCceeecceeee--eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 3468888766543 23345579999999999999999998876
No 108
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.18 E-value=1 Score=44.36 Aligned_cols=51 Identities=25% Similarity=0.679 Sum_probs=36.0
Q ss_pred CCcccccccccccCCCce-EecCCCC-----ccccchhHHHHHhc--------CCCCCCcccccCC
Q 014794 150 GALECAVCLSEFEDDETL-RLLPKCD-----HVFHPHCIDVWLAS--------HVTCPVCRANLTP 201 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~-r~lp~C~-----H~FH~~CI~~WL~~--------~~tCP~CR~~l~~ 201 (418)
.+..|-||+..=+++-.. -+-| |- |-.|..|+..|+.. ..+||-|+.+...
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 456799999885554322 2334 53 88999999999953 2369999988754
No 109
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=76.34 E-value=1.2 Score=32.89 Aligned_cols=43 Identities=28% Similarity=0.703 Sum_probs=25.3
Q ss_pred cccccccccccCCCceEecCCCC-ccccchhHHHHHhcCCCCCCcccccC
Q 014794 152 LECAVCLSEFEDDETLRLLPKCD-HVFHPHCIDVWLASHVTCPVCRANLT 200 (418)
Q Consensus 152 ~~CaICl~~f~~~~~~r~lp~C~-H~FH~~CI~~WL~~~~tCP~CR~~l~ 200 (418)
..|--|+-+.+. ++ +|. |..+-.|+...|.....||+|..++.
T Consensus 3 ~nCKsCWf~~k~---Li---~C~dHYLCl~CLt~ml~~s~~C~iC~~~LP 46 (50)
T PF03854_consen 3 YNCKSCWFANKG---LI---KCSDHYLCLNCLTLMLSRSDRCPICGKPLP 46 (50)
T ss_dssp ----SS-S--SS---EE---E-SS-EEEHHHHHHT-SSSSEETTTTEE--
T ss_pred ccChhhhhcCCC---ee---eecchhHHHHHHHHHhccccCCCcccCcCc
Confidence 357777765443 32 365 99999999999999999999998875
No 110
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=75.51 E-value=1.3 Score=49.59 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=36.7
Q ss_pred CCcccccccccccCCC---ceEecCCCCccccchhHHHHHhc------CCCCCCcccccC
Q 014794 150 GALECAVCLSEFEDDE---TLRLLPKCDHVFHPHCIDVWLAS------HVTCPVCRANLT 200 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~---~~r~lp~C~H~FH~~CI~~WL~~------~~tCP~CR~~l~ 200 (418)
....|.||..++.+++ ..-.+..|.|.||..||..|+.+ +-.|++|...|.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 4567888888887732 12222369999999999999864 445899987664
No 111
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=74.11 E-value=2.4 Score=42.41 Aligned_cols=47 Identities=23% Similarity=0.588 Sum_probs=33.8
Q ss_pred cccccccccc-CCC-ceEecCCCCccccchhHHHHHhc-CCCCCCcccccC
Q 014794 153 ECAVCLSEFE-DDE-TLRLLPKCDHVFHPHCIDVWLAS-HVTCPVCRANLT 200 (418)
Q Consensus 153 ~CaICl~~f~-~~~-~~r~lp~C~H~FH~~CI~~WL~~-~~tCP~CR~~l~ 200 (418)
.|++|-...- ..+ .+.+-+ |+|..|.+|++.-+.. ...||.|-..+-
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~-C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINE-CGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeecc-ccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 5888876632 222 334445 9999999999998876 557999966553
No 112
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.06 E-value=1.5 Score=45.63 Aligned_cols=38 Identities=24% Similarity=0.612 Sum_probs=28.6
Q ss_pred CCcccccccccccCC-CceEecCCCCccccchhHHHHHhc
Q 014794 150 GALECAVCLSEFEDD-ETLRLLPKCDHVFHPHCIDVWLAS 188 (418)
Q Consensus 150 ~~~~CaICl~~f~~~-~~~r~lp~C~H~FH~~CI~~WL~~ 188 (418)
...+|.||..+.... +... ..+|+|.||.+|+...++.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~-~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFS-VLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHH-HhcccchhhhHHhHHHhhh
Confidence 466899999555444 4444 3469999999999998875
No 113
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.44 E-value=1.9 Score=41.18 Aligned_cols=39 Identities=36% Similarity=0.814 Sum_probs=27.1
Q ss_pred cccccccccCCCceEecCCCCc-cccchhHHHHHhcCCCCCCcccccC
Q 014794 154 CAVCLSEFEDDETLRLLPKCDH-VFHPHCIDVWLASHVTCPVCRANLT 200 (418)
Q Consensus 154 CaICl~~f~~~~~~r~lp~C~H-~FH~~CI~~WL~~~~tCP~CR~~l~ 200 (418)
|-.|-+. ...+.++| |.| ++|..|=.. -..||+|+....
T Consensus 161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence 7777655 44588899 998 556667443 356999987553
No 114
>PHA01513 mnt Mnt
Probab=71.30 E-value=2.7 Score=34.57 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=16.7
Q ss_pred cccccccccccHHHHHHHHh
Q 014794 290 VSVERYTLRFPDEVRKQLMT 309 (418)
Q Consensus 290 ~~~eR~TLrlPe~v~~~~~~ 309 (418)
.+..+||||||++++.+|-.
T Consensus 3 r~~~qf~LRLP~eLk~rL~~ 22 (82)
T PHA01513 3 RDDPQFNLRLPYELKEKLKQ 22 (82)
T ss_pred CCCcceeeeCCHHHHHHHHH
Confidence 35679999999999988753
No 115
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=70.91 E-value=1.1 Score=49.68 Aligned_cols=46 Identities=35% Similarity=0.962 Sum_probs=36.2
Q ss_pred CcccccccccccCCCceEecCCCCccccchhHHHHHhcC---CCCCCcccccC
Q 014794 151 ALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH---VTCPVCRANLT 200 (418)
Q Consensus 151 ~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~---~tCP~CR~~l~ 200 (418)
..+|.||+..+... ..+ +|.|.|+..|+..-|... ..||+|+..+.
T Consensus 21 ~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhh
Confidence 46899999998875 233 699999999988776653 46999997664
No 116
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.83 E-value=5.8 Score=34.46 Aligned_cols=70 Identities=23% Similarity=0.361 Sum_probs=47.5
Q ss_pred CCHHHHhhCCceeeecccccccCCCCcccccccccccCC----------CceEecCCCCccccchhHHHHHhcCCCCCCc
Q 014794 126 LDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDD----------ETLRLLPKCDHVFHPHCIDVWLASHVTCPVC 195 (418)
Q Consensus 126 l~~~~i~~lP~~~y~~~~~~~~~~~~~~CaICl~~f~~~----------~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~C 195 (418)
|.+..-..+|...|.++...+ ......|--|+..|... .....-++|.+.|+.+|=.-+-+.=..||-|
T Consensus 31 LARSyHHLfPl~~f~ev~~~~-~~~~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC 109 (112)
T TIGR00622 31 LARSYHHLFPLKAFQEIPLEE-YNGSRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGC 109 (112)
T ss_pred HHHhhhccCCCcccccccccc-cCCCCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCC
Confidence 444455567776676653222 12345799999998753 1223456899999999988887777789999
Q ss_pred c
Q 014794 196 R 196 (418)
Q Consensus 196 R 196 (418)
.
T Consensus 110 ~ 110 (112)
T TIGR00622 110 I 110 (112)
T ss_pred C
Confidence 5
No 117
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=68.60 E-value=3.6 Score=36.76 Aligned_cols=53 Identities=21% Similarity=0.578 Sum_probs=35.2
Q ss_pred CCcccccccccccCCCceEecCCCCccccchh-HHHHHhc--CCCCCCcccccCCC
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHC-IDVWLAS--HVTCPVCRANLTPE 202 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~C-I~~WL~~--~~tCP~CR~~l~~~ 202 (418)
.-.+|-||.+.-.+..-+.--..||-..|.-| ..-|-.. +..||+|+.+....
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 45789999988655332222224888778765 5566443 77899999887643
No 118
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.35 E-value=2.8 Score=42.06 Aligned_cols=30 Identities=23% Similarity=0.703 Sum_probs=23.1
Q ss_pred CCccccchhHHHHHh-------------cCCCCCCcccccCCC
Q 014794 173 CDHVFHPHCIDVWLA-------------SHVTCPVCRANLTPE 202 (418)
Q Consensus 173 C~H~FH~~CI~~WL~-------------~~~tCP~CR~~l~~~ 202 (418)
|.-.+|.+|+.+|+. ++.+||.||+.....
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~ 367 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIR 367 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEe
Confidence 556778899999884 355799999987643
No 119
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=66.16 E-value=4.5 Score=38.39 Aligned_cols=40 Identities=38% Similarity=0.897 Sum_probs=29.4
Q ss_pred Cccccccccc-----ccCCCceEecCCCCccccchhHHHHHhcCCCCCCcc
Q 014794 151 ALECAVCLSE-----FEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCR 196 (418)
Q Consensus 151 ~~~CaICl~~-----f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR 196 (418)
+..|.+|-++ |+. +.+..-++|+-+||..|... ..||-|-
T Consensus 152 GfiCe~C~~~~~IfPF~~-~~~~~C~~C~~v~H~~C~~~-----~~CpkC~ 196 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQI-DTTVRCPKCKSVFHKSCFRK-----KSCPKCA 196 (202)
T ss_pred CCCCccCCCCCCCCCCCC-CCeeeCCcCccccchhhcCC-----CCCCCcH
Confidence 4688889753 233 34556678999999999762 6799994
No 120
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=65.25 E-value=2.1 Score=46.74 Aligned_cols=44 Identities=32% Similarity=0.730 Sum_probs=27.3
Q ss_pred CCccccccccc-----ccCCCceEecCCCCccccchhHHHHHhcCCCCCCccc
Q 014794 150 GALECAVCLSE-----FEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRA 197 (418)
Q Consensus 150 ~~~~CaICl~~-----f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~ 197 (418)
....|.+|-.. |+.....+-. .|+++||..|+.. +...||-|-.
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~-~C~avfH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCS-TCLAVFHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHH-HHHHHHHHHHHhc---cCCCCCchHH
Confidence 34567788221 3322333444 4999999999654 4555999943
No 121
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=64.83 E-value=4.4 Score=30.37 Aligned_cols=43 Identities=28% Similarity=0.563 Sum_probs=22.6
Q ss_pred cccccccccCCC------ceEecCCCCccccchhHHHHHhcCCCCCCcc
Q 014794 154 CAVCLSEFEDDE------TLRLLPKCDHVFHPHCIDVWLASHVTCPVCR 196 (418)
Q Consensus 154 CaICl~~f~~~~------~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR 196 (418)
|--|+..|.... ....-|+|++.|+.+|=.--=+.=.+||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 566777776642 3456678999999999443223345799984
No 122
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=63.38 E-value=2.8 Score=44.08 Aligned_cols=32 Identities=31% Similarity=0.675 Sum_probs=26.8
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHH
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVW 185 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~W 185 (418)
++..|+||..-|.+ .++|| |+|..|..|...-
T Consensus 3 eelkc~vc~~f~~e---piil~-c~h~lc~~ca~~~ 34 (699)
T KOG4367|consen 3 EELKCPVCGSFYRE---PIILP-CSHNLCQACARNI 34 (699)
T ss_pred ccccCceehhhccC---ceEee-cccHHHHHHHHhh
Confidence 56789999998887 66788 9999999997643
No 123
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=61.22 E-value=4.8 Score=39.93 Aligned_cols=51 Identities=29% Similarity=0.587 Sum_probs=36.7
Q ss_pred CCcccccccccccCCCceEe---cCCCCccccchhHHHHHhc---------CCCCCCcccccC
Q 014794 150 GALECAVCLSEFEDDETLRL---LPKCDHVFHPHCIDVWLAS---------HVTCPVCRANLT 200 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~---lp~C~H~FH~~CI~~WL~~---------~~tCP~CR~~l~ 200 (418)
...+|-+|.+++...+..+. -|.|.-.+|..|+..-+.. ...||.|++.+.
T Consensus 181 ~~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~~ 243 (276)
T KOG3005|consen 181 LNVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFLS 243 (276)
T ss_pred cchhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhceee
Confidence 34699999999955554433 2368889999999995432 346999988553
No 124
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=60.81 E-value=16 Score=25.77 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014794 78 MAIIILVLISTFFIVAMFSIYV 99 (418)
Q Consensus 78 ~~iiiivlv~~~fil~~~~i~~ 99 (418)
++|+..+++++..+++.+.+|.
T Consensus 6 IaIIv~V~vg~~iiii~~~~Ya 27 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYA 27 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666555555555554
No 125
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=60.46 E-value=9.1 Score=25.23 Aligned_cols=36 Identities=31% Similarity=0.673 Sum_probs=25.1
Q ss_pred cccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCccccc
Q 014794 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL 199 (418)
Q Consensus 154 CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l 199 (418)
|+.|-+.+.+.+..... =+..||.+| ..|..|...|
T Consensus 2 C~~C~~~i~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRA--LGKVWHPEC--------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEe--CCccccccC--------CCCcccCCcC
Confidence 78888888776333222 468899888 5677887665
No 126
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=59.96 E-value=3.9 Score=39.31 Aligned_cols=44 Identities=25% Similarity=0.607 Sum_probs=34.8
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcc
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCR 196 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR 196 (418)
.-..|.+|..-.-.+. +.- .|+-.+|..|+..+++....||.|-
T Consensus 180 nlk~Cn~Ch~LvIqg~--rCg-~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 180 NLKNCNLCHCLVIQGI--RCG-SCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHHhHhHHHhheee--ccC-cccchhhhHHHHHHhcccCcCCchh
Confidence 4458999988765543 222 4888999999999999999999994
No 127
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=58.55 E-value=13 Score=32.75 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 014794 77 SMAIIILVLISTFFIVAMFSIYVRH 101 (418)
Q Consensus 77 s~~iiiivlv~~~fil~~~~i~~r~ 101 (418)
+..|++.++.+++.+++++++++|+
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR 90 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRR 90 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666655555555443
No 128
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.10 E-value=8.7 Score=37.91 Aligned_cols=52 Identities=21% Similarity=0.388 Sum_probs=39.5
Q ss_pred CCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE 202 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~ 202 (418)
.....|+|---+|........+-.|||+|-..-+.+- ...+|++|.+.+...
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~ 160 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQED 160 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCccccc
Confidence 3567899998888877655545459999998887774 467899999877643
No 129
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=57.89 E-value=23 Score=36.17 Aligned_cols=45 Identities=24% Similarity=0.543 Sum_probs=33.7
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHHhc---CCCCCCc
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS---HVTCPVC 195 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~---~~tCP~C 195 (418)
.-..|++--+.-.+......+. |||+.-.+-++..-+. ...||.|
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~-CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLE-CGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred ceeeccccHhhhcccCCCeeee-ccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 4567888766666666666675 9999999999886554 4479999
No 130
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.85 E-value=4.4 Score=45.59 Aligned_cols=44 Identities=16% Similarity=0.508 Sum_probs=32.5
Q ss_pred CCcccccccccccCC----CceEecCCCCccccchhHHHHHhcCCCCCCc
Q 014794 150 GALECAVCLSEFEDD----ETLRLLPKCDHVFHPHCIDVWLASHVTCPVC 195 (418)
Q Consensus 150 ~~~~CaICl~~f~~~----~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~C 195 (418)
....|.-|.+..... +.+.+.- |+|+||..|+.--..++. |-.|
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~-c~h~yhk~c~~~~~~~~~-~~~~ 830 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFH-CGHMYHKECLMMESLRNA-CNIE 830 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEE-ccchhhhcccccHHHhcc-cChh
Confidence 345799999887633 3456664 999999999988777665 6555
No 131
>PLN02189 cellulose synthase
Probab=53.98 E-value=49 Score=38.83 Aligned_cols=53 Identities=17% Similarity=0.426 Sum_probs=36.1
Q ss_pred CCccccccccccc---CCCceEecCCCCccccchhHHHHH-hcCCCCCCcccccCCC
Q 014794 150 GALECAVCLSEFE---DDETLRLLPKCDHVFHPHCIDVWL-ASHVTCPVCRANLTPE 202 (418)
Q Consensus 150 ~~~~CaICl~~f~---~~~~~r~lp~C~H~FH~~CI~~WL-~~~~tCP~CR~~l~~~ 202 (418)
....|.||-+++. +++..+-...|+--.|..|.+-=- +.++.||.|+....-.
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~ 89 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRL 89 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhc
Confidence 4458999999975 334444444477678999984322 2377899999988643
No 132
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=53.69 E-value=11 Score=27.51 Aligned_cols=39 Identities=26% Similarity=0.579 Sum_probs=28.4
Q ss_pred cccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCcccccCCC
Q 014794 154 CAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPE 202 (418)
Q Consensus 154 CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l~~~ 202 (418)
|+.|-..+...+.+... -+..||.+| .+|-.|..+|...
T Consensus 1 C~~C~~~I~~~~~~~~~--~~~~~H~~C--------f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKA--MGKFWHPEC--------FKCSKCGKPLNDG 39 (58)
T ss_dssp BTTTSSBESSSSEEEEE--TTEEEETTT--------SBETTTTCBTTTS
T ss_pred CCCCCCCccCcEEEEEe--CCcEEEccc--------cccCCCCCccCCC
Confidence 77888888866654322 678899888 5788898887644
No 133
>PHA03163 hypothetical protein; Provisional
Probab=53.27 E-value=39 Score=28.18 Aligned_cols=10 Identities=20% Similarity=0.262 Sum_probs=4.4
Q ss_pred ccccCCCCCC
Q 014794 56 SAQTVTQPPA 65 (418)
Q Consensus 56 ~~q~~s~~~~ 65 (418)
-+|..+..|.
T Consensus 26 ~~~~n~t~p~ 35 (92)
T PHA03163 26 LCQNNSTTPH 35 (92)
T ss_pred HHhcCCCCCC
Confidence 3454444433
No 134
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=52.06 E-value=13 Score=38.06 Aligned_cols=70 Identities=24% Similarity=0.457 Sum_probs=46.9
Q ss_pred CCHHHHhhCCceeeecccccccCCCCcccccccccccCCCceEecCCCCccccchhHHHHHhcCCCCCCccc
Q 014794 126 LDPSVIESFPIFVYSAVKDLKIGKGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRA 197 (418)
Q Consensus 126 l~~~~i~~lP~~~y~~~~~~~~~~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~ 197 (418)
|.+..-.-+|...|.++..... .+...|-.|.++.......+- +.|.|.||.+|=.---++=..||.|..
T Consensus 306 LARSyhhL~PL~~F~Eip~~~~-~~~~~Cf~C~~~~~~~~~y~C-~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 306 LARSYHHLFPLKPFVEIPETEY-NGSRFCFACQGELLSSGRYRC-ESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred HHHHHHhhcCCcchhhcccccc-CCCcceeeeccccCCCCcEEc-hhccceeeccchHHHHhhhhcCCCcCC
Confidence 4455555677777776554332 234459999777777665554 459999999996554445567999963
No 136
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=50.81 E-value=14 Score=37.54 Aligned_cols=52 Identities=29% Similarity=0.624 Sum_probs=35.9
Q ss_pred CCccccccccccc---------C------C-CceEecCCCCccccchhHHHHHhc---------CCCCCCcccccCCC
Q 014794 150 GALECAVCLSEFE---------D------D-ETLRLLPKCDHVFHPHCIDVWLAS---------HVTCPVCRANLTPE 202 (418)
Q Consensus 150 ~~~~CaICl~~f~---------~------~-~~~r~lp~C~H~FH~~CI~~WL~~---------~~tCP~CR~~l~~~ 202 (418)
...+|++|+..=. . + -.-...| |||+--.+-..-|-+. +..||.|-..+..+
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~P-CGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNP-CGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCC-cccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 4679999997621 0 0 0123466 9999888888889764 45699998877644
No 137
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=48.21 E-value=13 Score=26.66 Aligned_cols=43 Identities=26% Similarity=0.589 Sum_probs=29.1
Q ss_pred ccccccccccCCCceEecCCCCccccchhHHHHHh------cCCCCCCcc
Q 014794 153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLA------SHVTCPVCR 196 (418)
Q Consensus 153 ~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~------~~~tCP~CR 196 (418)
.|.||...-. ++.+..-..|+..||..|+..=.. ....||.|+
T Consensus 1 ~C~vC~~~~~-~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDD-DGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCT-TSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCC-CCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 3889988433 344445556999999999876543 144688775
No 138
>PF05534 HicB: HicB family; InterPro: IPR008651 This family consists of several bacterial HicB related proteins. The function of HicB is unknown although it is thought to be involved in pilus formation. It has been speculated that HicB performs a function antagonistic to that of pili and yet is necessary for invasion of certain niches [].
Probab=45.48 E-value=14 Score=27.51 Aligned_cols=17 Identities=29% Similarity=0.702 Sum_probs=14.7
Q ss_pred ccccccccHHHHHHHHh
Q 014794 293 ERYTLRFPDEVRKQLMT 309 (418)
Q Consensus 293 eR~TLrlPe~v~~~~~~ 309 (418)
-+||||+|+++++++..
T Consensus 18 g~~~lRi~~~Lh~~l~~ 34 (51)
T PF05534_consen 18 GKFNLRIPPELHRALAE 34 (51)
T ss_pred CceeeeCCHHHHHHHHH
Confidence 47999999999999763
No 139
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.58 E-value=11 Score=39.80 Aligned_cols=37 Identities=30% Similarity=0.833 Sum_probs=30.2
Q ss_pred CCCcccccccccccCCCceEecCCCCccccchhHHHHHhc
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS 188 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~ 188 (418)
....+|-||.+.+.. .+..+. |+|.|+..|+...+..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~-c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLG-CGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcC-CCcHHHHHHHHHHhhh
Confidence 466789999999876 344454 9999999999999875
No 140
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=43.45 E-value=23 Score=26.15 Aligned_cols=43 Identities=23% Similarity=0.583 Sum_probs=19.0
Q ss_pred cccccccccccCCCceEecCCCCccccchhHHHHHhc-----CCCCCCcccc
Q 014794 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS-----HVTCPVCRAN 198 (418)
Q Consensus 152 ~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~-----~~tCP~CR~~ 198 (418)
..|+|....+.. .+|... |.|.-+.+ ++.||.. .-.||+|.++
T Consensus 3 L~CPls~~~i~~--P~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRI--PVRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SS--EEEETT---SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEe--CccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 468888877665 355554 88873322 3345543 3369999763
No 141
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=42.49 E-value=15 Score=23.61 Aligned_cols=23 Identities=26% Similarity=0.697 Sum_probs=12.0
Q ss_pred ccccccccccCCCceEecCCCCccc
Q 014794 153 ECAVCLSEFEDDETLRLLPKCDHVF 177 (418)
Q Consensus 153 ~CaICl~~f~~~~~~r~lp~C~H~F 177 (418)
.|+-|-.++... .+.-|.|||.|
T Consensus 2 ~CP~C~~~V~~~--~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPES--AKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhh--cCcCCCCCCCC
Confidence 366666554332 33345566665
No 142
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=41.63 E-value=16 Score=25.21 Aligned_cols=26 Identities=35% Similarity=0.761 Sum_probs=16.0
Q ss_pred ccccccccccCCCc-------eEecCCCCcccc
Q 014794 153 ECAVCLSEFEDDET-------LRLLPKCDHVFH 178 (418)
Q Consensus 153 ~CaICl~~f~~~~~-------~r~lp~C~H~FH 178 (418)
.|+-|-..|..++. ...-++|+|+|+
T Consensus 4 ~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~~f~ 36 (37)
T PF13719_consen 4 TCPNCQTRFRVPDDKLPAGGRKVRCPKCGHVFR 36 (37)
T ss_pred ECCCCCceEEcCHHHcccCCcEEECCCCCcEee
Confidence 57778777765442 233446777765
No 143
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=41.50 E-value=20 Score=31.18 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=16.9
Q ss_pred HhcCCCCCCcccccCCCCcccccc
Q 014794 186 LASHVTCPVCRANLTPESNEKVKL 209 (418)
Q Consensus 186 L~~~~tCP~CR~~l~~~~~~~~~~ 209 (418)
+.+...|+.|++++..++..+...
T Consensus 82 LGr~D~CM~C~~pLTLd~~legke 105 (114)
T PF11023_consen 82 LGRVDACMHCKEPLTLDPSLEGKE 105 (114)
T ss_pred hchhhccCcCCCcCccCchhhcch
Confidence 344567999999998766554443
No 144
>PF13994 PgaD: PgaD-like protein
Probab=40.84 E-value=69 Score=28.43 Aligned_cols=12 Identities=25% Similarity=0.606 Sum_probs=5.8
Q ss_pred CCCCCHHHHhhC
Q 014794 123 NRGLDPSVIESF 134 (418)
Q Consensus 123 ~rgl~~~~i~~l 134 (418)
.-+++++.++.+
T Consensus 109 ~f~l~~~~l~~l 120 (138)
T PF13994_consen 109 SFGLSPEQLQQL 120 (138)
T ss_pred HcCCCHHHHHHH
Confidence 344555555443
No 145
>PHA02849 putative transmembrane protein; Provisional
Probab=39.97 E-value=38 Score=27.62 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=19.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 014794 73 TLDPSMAIIILVLISTFFIVAMFSIYVRHCS 103 (418)
Q Consensus 73 ~~~~s~~iiiivlv~~~fil~~~~i~~r~c~ 103 (418)
.|+..+..+|.+++.++.++.++++|+-+|.
T Consensus 11 ~f~~g~v~vi~v~v~vI~i~~flLlyLvkws 41 (82)
T PHA02849 11 EFDAGAVTVILVFVLVISFLAFMLLYLIKWS 41 (82)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666667777777766654
No 146
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=39.85 E-value=69 Score=25.78 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 014794 78 MAIIILVLISTFFIVAMFSIYV 99 (418)
Q Consensus 78 ~~iiiivlv~~~fil~~~~i~~ 99 (418)
+.++++.++.++++++++..|+
T Consensus 48 ~~~~ii~ii~v~ii~~l~flYL 69 (72)
T PF12575_consen 48 WIILIISIIFVLIIVLLTFLYL 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444445554555555
No 147
>PHA00617 ribbon-helix-helix domain containing protein
Probab=39.70 E-value=17 Score=29.80 Aligned_cols=21 Identities=14% Similarity=0.363 Sum_probs=18.1
Q ss_pred cCcccccccccccHHHHHHHH
Q 014794 288 AGVSVERYTLRFPDEVRKQLM 308 (418)
Q Consensus 288 ~~~~~eR~TLrlPe~v~~~~~ 308 (418)
.++...++|+|||+++..+|-
T Consensus 35 ~~~~m~~iSVrLp~eL~erLD 55 (80)
T PHA00617 35 LTETMDVISFKLPPELNAKLE 55 (80)
T ss_pred cCCCceEEEEECCHHHHHHHH
Confidence 577889999999999987764
No 148
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=39.23 E-value=18 Score=31.70 Aligned_cols=16 Identities=31% Similarity=0.445 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 014794 80 IIILVLISTFFIVAMF 95 (418)
Q Consensus 80 iiiivlv~~~fil~~~ 95 (418)
+|||++++++|+++++
T Consensus 6 ~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 6 AIIIVAILLFLFLFYC 21 (130)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333344
No 149
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=38.30 E-value=17 Score=27.90 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=19.2
Q ss_pred CCCcccccccccccCCCceEecCCCCccccchhHHHH
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVW 185 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~W 185 (418)
.+...|.+|...|..-..-..-..||++|+..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 3566899999999764433344469999999997654
No 150
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=36.97 E-value=11 Score=39.34 Aligned_cols=51 Identities=29% Similarity=0.608 Sum_probs=0.0
Q ss_pred Cccccccccccc-------------CC---CceEecCCCCccccchhHHHHHhc---------CCCCCCcccccCCC
Q 014794 151 ALECAVCLSEFE-------------DD---ETLRLLPKCDHVFHPHCIDVWLAS---------HVTCPVCRANLTPE 202 (418)
Q Consensus 151 ~~~CaICl~~f~-------------~~---~~~r~lp~C~H~FH~~CI~~WL~~---------~~tCP~CR~~l~~~ 202 (418)
..+|++|+..-. .+ -.....| |||+--.+...-|-+. +..||.|-..|...
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~P-CGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~ 403 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNP-CGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGE 403 (416)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecc-cccccchhhhhhhhcCCCCCCcccccccCCcccCcccCC
Confidence 678999997621 11 1234567 9999888899999763 45799998888643
No 151
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=36.85 E-value=26 Score=39.58 Aligned_cols=48 Identities=29% Similarity=0.609 Sum_probs=31.4
Q ss_pred CCCCcccccccccccCC---------CceEecCCCCccccchhHHHHHhcCCCCCCccccc
Q 014794 148 GKGALECAVCLSEFEDD---------ETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANL 199 (418)
Q Consensus 148 ~~~~~~CaICl~~f~~~---------~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l 199 (418)
...+..|+-|-..|-.. ...-+.|.|.|.-|+.=|.. ...||+|...+
T Consensus 1128 ~~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EIs~----y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1128 DPYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEISK----YNCCPLCHSME 1184 (1189)
T ss_pred CccCCCChhhcCcCceeeccCCccccceEEEccccccccccccccc----cccCccccChh
Confidence 34566777777766421 12334667999988876544 67899997654
No 152
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.18 E-value=18 Score=37.71 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=32.5
Q ss_pred CCcccccccccccCCC--ceEecCCCCccccchhHHHHHhcCCCCCCc
Q 014794 150 GALECAVCLSEFEDDE--TLRLLPKCDHVFHPHCIDVWLASHVTCPVC 195 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~--~~r~lp~C~H~FH~~CI~~WL~~~~tCP~C 195 (418)
.-..|+.|.-.++... ...... |+|.|+..|...|...+..|..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 3456888876665433 233444 99999999999998888888655
No 153
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.90 E-value=20 Score=35.39 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=28.8
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHHhc
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS 188 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~ 188 (418)
..+.|+.||..+.+ ..+.| =||+|+.+||.+++..
T Consensus 42 ~FdcCsLtLqPc~d---Pvit~-~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRD---PVITP-DGYLFDREAILEYILA 76 (303)
T ss_pred CcceeeeecccccC---CccCC-CCeeeeHHHHHHHHHH
Confidence 56789999999887 45566 8999999999998743
No 154
>PHA03054 IMV membrane protein; Provisional
Probab=35.87 E-value=74 Score=25.50 Aligned_cols=24 Identities=8% Similarity=0.455 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 014794 77 SMAIIILVLISTFFIVAMFSIYVR 100 (418)
Q Consensus 77 s~~iiiivlv~~~fil~~~~i~~r 100 (418)
.+.++|++++.++++++++..|++
T Consensus 47 ~~~~~ii~l~~v~~~~l~~flYLK 70 (72)
T PHA03054 47 GWYWLIIIFFIVLILLLLIYLYLK 70 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555556666666654
No 155
>PHA02819 hypothetical protein; Provisional
Probab=35.43 E-value=64 Score=25.83 Aligned_cols=24 Identities=17% Similarity=0.476 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 014794 77 SMAIIILVLISTFFIVAMFSIYVR 100 (418)
Q Consensus 77 s~~iiiivlv~~~fil~~~~i~~r 100 (418)
.+.++|++++.++++++++..|++
T Consensus 45 ~~~~~ii~l~~~~~~~~~~flYLK 68 (71)
T PHA02819 45 LRYYLIIGLVTIVFVIIFIIFYLK 68 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555556666666654
No 156
>PLN02436 cellulose synthase A
Probab=34.81 E-value=46 Score=39.21 Aligned_cols=52 Identities=21% Similarity=0.514 Sum_probs=35.0
Q ss_pred CCccccccccccc---CCCceEecCCCCccccchhHHHHH-hcCCCCCCcccccCC
Q 014794 150 GALECAVCLSEFE---DDETLRLLPKCDHVFHPHCIDVWL-ASHVTCPVCRANLTP 201 (418)
Q Consensus 150 ~~~~CaICl~~f~---~~~~~r~lp~C~H~FH~~CI~~WL-~~~~tCP~CR~~l~~ 201 (418)
....|.||-+++. +++..+-...|+--.|..|.+-=- +.++.||.|+....-
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhh
Confidence 3448999999974 444443333466668999984322 237789999998863
No 157
>PHA02650 hypothetical protein; Provisional
Probab=34.61 E-value=66 Score=26.33 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 014794 77 SMAIIILVLISTFFIVAMFSIYVRH 101 (418)
Q Consensus 77 s~~iiiivlv~~~fil~~~~i~~r~ 101 (418)
.+.++|++++.+++++++++.|++-
T Consensus 48 ~~~~~ii~i~~v~i~~l~~flYLK~ 72 (81)
T PHA02650 48 NGQNFIFLIFSLIIVALFSFFVFKG 72 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555666666666644
No 158
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=34.59 E-value=20 Score=43.54 Aligned_cols=50 Identities=30% Similarity=0.543 Sum_probs=39.5
Q ss_pred CCCcccccccccccCCCceEecCCCCccccchhHHHHHhc----CCCCCCccccc
Q 014794 149 KGALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLAS----HVTCPVCRANL 199 (418)
Q Consensus 149 ~~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~----~~tCP~CR~~l 199 (418)
.....|-+|.....+.+.+... .|.-.||..|+..-+.. .-.||-||..-
T Consensus 1106 ~~~~~c~~cr~k~~~~~m~lc~-~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1106 AVNALCKVCRRKKQDEKMLLCD-ECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred cchhhhhhhhhcccchhhhhhH-hhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 4567899999998875555444 49999999999998875 45799998765
No 159
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=34.52 E-value=26 Score=35.82 Aligned_cols=49 Identities=18% Similarity=0.464 Sum_probs=34.8
Q ss_pred CCcccccccccccCCCceE-ecCCCCccccchhHHHHHhcCCCCCCccccc
Q 014794 150 GALECAVCLSEFEDDETLR-LLPKCDHVFHPHCIDVWLASHVTCPVCRANL 199 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r-~lp~C~H~FH~~CI~~WL~~~~tCP~CR~~l 199 (418)
....|+||.+.....+... -.| |++..|..|...-...+.+||.||.+.
T Consensus 248 v~~s~p~~~~~~~~~d~~~lP~~-~~~~~~l~~~~t~~~~~~~~~~~rk~~ 297 (327)
T KOG2068|consen 248 VPPSCPICYEDLDLTDSNFLPCP-CGFRLCLFCHKTISDGDGRCPGCRKPY 297 (327)
T ss_pred cCCCCCCCCCccccccccccccc-ccccchhhhhhcccccCCCCCccCCcc
Confidence 3478999999875444332 233 777777777777777788999999544
No 160
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=34.42 E-value=35 Score=28.53 Aligned_cols=35 Identities=6% Similarity=0.139 Sum_probs=24.1
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 014794 69 GLYTTLDPSMAIIILVLISTFFIVAMFSIYVRHCS 103 (418)
Q Consensus 69 ~~~~~~~~s~~iiiivlv~~~fil~~~~i~~r~c~ 103 (418)
.....|+.-..++|++++++.++.+.+..++|-|.
T Consensus 29 ss~~~ws~vv~v~i~~lvaVg~~YL~y~~fLkDlI 63 (91)
T PF01708_consen 29 SSGLPWSRVVEVAIFTLVAVGCLYLAYTWFLKDLI 63 (91)
T ss_pred CCCCcceeEeeeeehHHHHHHHHHHHHHHHHHHHh
Confidence 33445666666777777777777777777777665
No 161
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=33.22 E-value=30 Score=23.80 Aligned_cols=26 Identities=35% Similarity=0.738 Sum_probs=15.6
Q ss_pred ccccccccccCCCc-------eEecCCCCcccc
Q 014794 153 ECAVCLSEFEDDET-------LRLLPKCDHVFH 178 (418)
Q Consensus 153 ~CaICl~~f~~~~~-------~r~lp~C~H~FH 178 (418)
+|+=|...|..++. ...-++|+|.|+
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 57778887775543 123345777764
No 162
>PHA02975 hypothetical protein; Provisional
Probab=32.67 E-value=74 Score=25.33 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 014794 78 MAIIILVLISTFFIVAMFSIYVR 100 (418)
Q Consensus 78 ~~iiiivlv~~~fil~~~~i~~r 100 (418)
+.+++++++.+++++++...|++
T Consensus 44 ~~~~ii~i~~v~~~~~~~flYLK 66 (69)
T PHA02975 44 SIILIIFIIFITCIAVFTFLYLK 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555654
No 163
>PHA02844 putative transmembrane protein; Provisional
Probab=32.56 E-value=79 Score=25.58 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 014794 78 MAIIILVLISTFFIVAMFSIYVRH 101 (418)
Q Consensus 78 ~~iiiivlv~~~fil~~~~i~~r~ 101 (418)
+.++|++++.++++++++..|++-
T Consensus 48 ~~~~ii~i~~v~~~~~~~flYLK~ 71 (75)
T PHA02844 48 TKIWILTIIFVVFATFLTFLYLKA 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhe
Confidence 444444455555566666666643
No 164
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.56 E-value=31 Score=34.78 Aligned_cols=40 Identities=20% Similarity=0.360 Sum_probs=29.2
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHHHHhcC
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVWLASH 189 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~WL~~~ 189 (418)
....|.+|.+.+++..-+..-..=.|.||..|-.+-++.+
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 5688999999998865442211235999999999887753
No 165
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=31.39 E-value=1.2e+02 Score=25.21 Aligned_cols=20 Identities=20% Similarity=0.527 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 014794 84 VLISTFFIVAMFSIYVRHCS 103 (418)
Q Consensus 84 vlv~~~fil~~~~i~~r~c~ 103 (418)
+++.+++.++++..|.|+|.
T Consensus 10 ~V~V~IVclliya~YRR~~i 29 (92)
T PHA02681 10 VIVISIVCYIVIMMYRRSCV 29 (92)
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 44444455556667777764
No 166
>PRK05978 hypothetical protein; Provisional
Probab=30.68 E-value=32 Score=31.36 Aligned_cols=27 Identities=19% Similarity=0.534 Sum_probs=20.5
Q ss_pred CccccchhHHHHHhcCCCCCCcccccCCCCcc
Q 014794 174 DHVFHPHCIDVWLASHVTCPVCRANLTPESNE 205 (418)
Q Consensus 174 ~H~FH~~CI~~WL~~~~tCP~CR~~l~~~~~~ 205 (418)
||.|+ .+|+.+.+||.|-.++...+.+
T Consensus 42 G~LF~-----g~Lkv~~~C~~CG~~~~~~~a~ 68 (148)
T PRK05978 42 GKLFR-----AFLKPVDHCAACGEDFTHHRAD 68 (148)
T ss_pred Ccccc-----cccccCCCccccCCccccCCcc
Confidence 36775 6788899999998888765443
No 167
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=29.77 E-value=1.1e+02 Score=31.00 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=21.6
Q ss_pred hhcccCchhHHHHHHHHHHHHhhhcccccccc
Q 014794 28 RFENFNPSRWIIHVTWLLLLWPTLYDYASAQT 59 (418)
Q Consensus 28 ~~~~F~~~~~~~~~~~l~l~~~~~~~~~~~q~ 59 (418)
++.-||...|-+-++|++++.++...|...|.
T Consensus 56 Ry~~yNs~~fr~~~a~I~yivlw~~l~Stl~l 87 (308)
T PF14800_consen 56 RYTLYNSRYFRLLVAVIFYIVLWANLYSTLQL 87 (308)
T ss_pred eeeeecchHHHHHHHHHHHHHHHHHHHccchh
Confidence 45667777777777888877777666654443
No 168
>PF15102 TMEM154: TMEM154 protein family
Probab=29.21 E-value=32 Score=31.27 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=6.1
Q ss_pred chhHHHHHhc
Q 014794 179 PHCIDVWLAS 188 (418)
Q Consensus 179 ~~CI~~WL~~ 188 (418)
.+=|+.|+.+
T Consensus 127 meeldkwm~s 136 (146)
T PF15102_consen 127 MEELDKWMNS 136 (146)
T ss_pred HHHHHhHHHh
Confidence 3457777665
No 169
>PHA02902 putative IMV membrane protein; Provisional
Probab=29.18 E-value=1.7e+02 Score=23.12 Aligned_cols=18 Identities=22% Similarity=0.525 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 014794 84 VLISTFFIVAMFSIYVRH 101 (418)
Q Consensus 84 vlv~~~fil~~~~i~~r~ 101 (418)
.++.+++.++++..|.|+
T Consensus 10 ~v~v~Ivclliya~YrR~ 27 (70)
T PHA02902 10 AVIVIIFCLLIYAAYKRY 27 (70)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333344445555566655
No 170
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=29.05 E-value=30 Score=23.38 Aligned_cols=15 Identities=47% Similarity=0.791 Sum_probs=12.5
Q ss_pred cccccccHHHHHHHH
Q 014794 294 RYTLRFPDEVRKQLM 308 (418)
Q Consensus 294 R~TLrlPe~v~~~~~ 308 (418)
|.|++||+++..+|-
T Consensus 1 Riti~l~~~~~~~l~ 15 (39)
T PF01402_consen 1 RITIRLPDELYERLD 15 (39)
T ss_dssp EEEEEEEHHHHHHHH
T ss_pred CeEEEeCHHHHHHHH
Confidence 789999999977653
No 171
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=28.42 E-value=17 Score=38.79 Aligned_cols=50 Identities=22% Similarity=0.488 Sum_probs=33.6
Q ss_pred CCcccccccccc-cCCCceEecCCCCccccchhHHHHHhc--------CCCCCCccccc
Q 014794 150 GALECAVCLSEF-EDDETLRLLPKCDHVFHPHCIDVWLAS--------HVTCPVCRANL 199 (418)
Q Consensus 150 ~~~~CaICl~~f-~~~~~~r~lp~C~H~FH~~CI~~WL~~--------~~tCP~CR~~l 199 (418)
....|++|+.-. -..+.+....+|+-.||..|-...... ..-|-+|....
T Consensus 167 ~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~ 225 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGP 225 (464)
T ss_pred ccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccch
Confidence 456699999543 334455556679999999997665432 33599996644
No 172
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=28.36 E-value=80 Score=24.26 Aligned_cols=45 Identities=24% Similarity=0.680 Sum_probs=32.7
Q ss_pred ccccccccccCCC-ceEecCCCC--ccccchhHHHHHhcCCCCCCcccccCCC
Q 014794 153 ECAVCLSEFEDDE-TLRLLPKCD--HVFHPHCIDVWLASHVTCPVCRANLTPE 202 (418)
Q Consensus 153 ~CaICl~~f~~~~-~~r~lp~C~--H~FH~~CI~~WL~~~~tCP~CR~~l~~~ 202 (418)
.|-.|-.++..+. ..++ |. ..|+.+|.+.-| +..||.|-..+...
T Consensus 7 nCE~C~~dLp~~s~~A~I---CSfECTFC~~C~e~~l--~~~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYI---CSFECTFCADCAETML--NGVCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceE---EeEeCcccHHHHHHHh--cCcCcCCCCccccC
Confidence 5777777777665 3333 54 479999999866 78899998877643
No 173
>PHA03240 envelope glycoprotein M; Provisional
Probab=28.03 E-value=44 Score=32.40 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=18.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhccccCc
Q 014794 75 DPSMAIIILVLISTFFIVAMFSIYVRHCSDSR 106 (418)
Q Consensus 75 ~~s~~iiiivlv~~~fil~~~~i~~r~c~~~~ 106 (418)
..++||||+|++.+++++++|-+=-|.+-+++
T Consensus 211 aH~~WIiilIIiIiIIIL~cfKiPQKl~dKw~ 242 (258)
T PHA03240 211 AHIAWIFIAIIIIIVIILFFFKIPQKLFDKWD 242 (258)
T ss_pred chHhHHHHHHHHHHHHHHHHHhccHHHHHHHh
Confidence 34577777777766666655544434343443
No 174
>PHA03156 hypothetical protein; Provisional
Probab=27.83 E-value=2.4e+02 Score=23.62 Aligned_cols=16 Identities=13% Similarity=0.194 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHhhhc
Q 014794 37 WIIHVTWLLLLWPTLY 52 (418)
Q Consensus 37 ~~~~~~~l~l~~~~~~ 52 (418)
|-.+.+||+++.+-+.
T Consensus 3 ~~~~~~~l~~~~~cl~ 18 (90)
T PHA03156 3 RGLFICFLIFFKICLR 18 (90)
T ss_pred chhHHHHHHHHHHHHh
Confidence 4445566665554433
No 175
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=27.63 E-value=39 Score=22.61 Aligned_cols=20 Identities=30% Similarity=0.748 Sum_probs=12.4
Q ss_pred CCCccccchhHHHHHhcCCCCCCccc
Q 014794 172 KCDHVFHPHCIDVWLASHVTCPVCRA 197 (418)
Q Consensus 172 ~C~H~FH~~CI~~WL~~~~tCP~CR~ 197 (418)
.|||++...- ....||+|..
T Consensus 6 ~CGy~y~~~~------~~~~CP~Cg~ 25 (33)
T cd00350 6 VCGYIYDGEE------APWVCPVCGA 25 (33)
T ss_pred CCCCEECCCc------CCCcCcCCCC
Confidence 3666655432 3458999965
No 176
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PLN02400 cellulose synthase
Probab=26.67 E-value=61 Score=38.27 Aligned_cols=53 Identities=13% Similarity=0.396 Sum_probs=33.9
Q ss_pred CCcccccccccccC---CCceEecCCCCccccchhHHH-HHhcCCCCCCcccccCCC
Q 014794 150 GALECAVCLSEFED---DETLRLLPKCDHVFHPHCIDV-WLASHVTCPVCRANLTPE 202 (418)
Q Consensus 150 ~~~~CaICl~~f~~---~~~~r~lp~C~H~FH~~CI~~-WL~~~~tCP~CR~~l~~~ 202 (418)
....|.||-+++.. ++..+-.-.|+-=.|..|.+- .-+.++.||-|+....-.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccc
Confidence 34489999999753 333332223555588889742 122478899999888633
No 178
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=26.62 E-value=80 Score=37.34 Aligned_cols=51 Identities=18% Similarity=0.487 Sum_probs=33.4
Q ss_pred CCcccccccccccC---CCceEecCCCCccccchhHHH-HHhcCCCCCCcccccC
Q 014794 150 GALECAVCLSEFED---DETLRLLPKCDHVFHPHCIDV-WLASHVTCPVCRANLT 200 (418)
Q Consensus 150 ~~~~CaICl~~f~~---~~~~r~lp~C~H~FH~~CI~~-WL~~~~tCP~CR~~l~ 200 (418)
....|.||-+++.. ++..+-.-.|+-=.|..|.+- .-+.++.||.|+....
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 34489999999753 333332223555589999842 1234789999998876
No 179
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=26.27 E-value=44 Score=24.41 Aligned_cols=34 Identities=18% Similarity=0.381 Sum_probs=23.7
Q ss_pred cccccccccccCCCceEecCCCCccccchhHHHH
Q 014794 152 LECAVCLSEFEDDETLRLLPKCDHVFHPHCIDVW 185 (418)
Q Consensus 152 ~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~W 185 (418)
..|.+|-..|.....-.....||++|+..|....
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 4688998888764433333469999999886654
No 180
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=25.90 E-value=54 Score=31.19 Aligned_cols=18 Identities=28% Similarity=0.349 Sum_probs=7.2
Q ss_pred CChHHHHHHHHHHHHHHH
Q 014794 74 LDPSMAIIILVLISTFFI 91 (418)
Q Consensus 74 ~~~s~~iiiivlv~~~fi 91 (418)
+.+.++.++.-++.++++
T Consensus 44 ~~~~~~~~i~qlInFlIl 61 (205)
T PRK06231 44 LFPNFWVFIAHLIAFSIL 61 (205)
T ss_pred hcCcHHHHHHHHHHHHHH
Confidence 344444444433333333
No 181
>PLN02195 cellulose synthase A
Probab=25.81 E-value=86 Score=36.69 Aligned_cols=51 Identities=22% Similarity=0.427 Sum_probs=34.6
Q ss_pred CCcccccccccccC---CCceEecCCCCccccchhHHHHH-hcCCCCCCcccccC
Q 014794 150 GALECAVCLSEFED---DETLRLLPKCDHVFHPHCIDVWL-ASHVTCPVCRANLT 200 (418)
Q Consensus 150 ~~~~CaICl~~f~~---~~~~r~lp~C~H~FH~~CI~~WL-~~~~tCP~CR~~l~ 200 (418)
+...|.||-+++.. ++..+-.-.|+--.|..|.+-=- +.++.||.|+....
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 45589999998754 33333333477778999984221 23778999998886
No 182
>PHA02657 hypothetical protein; Provisional
Probab=24.87 E-value=65 Score=26.79 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=13.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 014794 73 TLDPSMAIIILVLISTFFIVAMFSIYVRHCS 103 (418)
Q Consensus 73 ~~~~s~~iiiivlv~~~fil~~~~i~~r~c~ 103 (418)
+|...|.| .+.+.++.++.++++|+-+|.
T Consensus 23 ~~~~imVi--tvfv~vI~il~flLLYLvkWS 51 (95)
T PHA02657 23 NFESILVF--TIFIFVVCILIYLLIYLVDWS 51 (95)
T ss_pred cchhhhHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 44444433 333444444555555554544
No 183
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=24.55 E-value=48 Score=24.53 Aligned_cols=23 Identities=30% Similarity=0.671 Sum_probs=13.2
Q ss_pred CCCccccchhHHHHHhcCCCCCCc
Q 014794 172 KCDHVFHPHCIDVWLASHVTCPVC 195 (418)
Q Consensus 172 ~C~H~FH~~CI~~WL~~~~tCP~C 195 (418)
.|+|.|...=-+. ......||.|
T Consensus 33 ~Cgh~w~~~v~~R-~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKASVNDR-TRRGKGCPYC 55 (55)
T ss_pred CCCCeeEccHhhh-ccCCCCCCCC
Confidence 5777665432222 2456679988
No 184
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=24.32 E-value=97 Score=32.61 Aligned_cols=9 Identities=22% Similarity=0.158 Sum_probs=3.8
Q ss_pred CCccCCCCC
Q 014794 272 PERFPRSHS 280 (418)
Q Consensus 272 ~~~~pRShS 280 (418)
|..+||.-.
T Consensus 252 W~~~pr~lr 260 (400)
T COG3071 252 WKNQPRKLR 260 (400)
T ss_pred HHhccHHhh
Confidence 344444433
No 185
>PF15050 SCIMP: SCIMP protein
Probab=23.91 E-value=86 Score=27.75 Aligned_cols=12 Identities=8% Similarity=0.107 Sum_probs=4.5
Q ss_pred HHHHHHHHhccc
Q 014794 92 VAMFSIYVRHCS 103 (418)
Q Consensus 92 l~~~~i~~r~c~ 103 (418)
+++++++++++.
T Consensus 23 lglIlyCvcR~~ 34 (133)
T PF15050_consen 23 LGLILYCVCRWQ 34 (133)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 186
>PHA02692 hypothetical protein; Provisional
Probab=23.84 E-value=1.2e+02 Score=24.30 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 014794 85 LISTFFIVAMFSIYVR 100 (418)
Q Consensus 85 lv~~~fil~~~~i~~r 100 (418)
++.++++++++..|++
T Consensus 53 ~~~~~~~vll~flYLK 68 (70)
T PHA02692 53 LIAAAIGVLLCFHYLK 68 (70)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4445555555555553
No 187
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=23.49 E-value=51 Score=30.29 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 014794 84 VLISTFFIVAMFSIY 98 (418)
Q Consensus 84 vlv~~~fil~~~~i~ 98 (418)
|++++++|++++.++
T Consensus 84 vi~~Vi~Iv~~Iv~~ 98 (179)
T PF13908_consen 84 VICGVIAIVVLIVCF 98 (179)
T ss_pred hhhHHHHHHHhHhhh
Confidence 333333333333333
No 188
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=23.42 E-value=1.2e+02 Score=25.21 Aligned_cols=17 Identities=24% Similarity=0.567 Sum_probs=9.2
Q ss_pred CCCCChHHHHHHHHHHH
Q 014794 71 YTTLDPSMAIIILVLIS 87 (418)
Q Consensus 71 ~~~~~~s~~iiiivlv~ 87 (418)
...+++++.+.|+|++.
T Consensus 19 ~~~l~pn~lMtILivLV 35 (85)
T PF10717_consen 19 LNGLNPNTLMTILIVLV 35 (85)
T ss_pred ccccChhHHHHHHHHHH
Confidence 44667766555444443
No 189
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=23.38 E-value=49 Score=27.72 Aligned_cols=34 Identities=26% Similarity=0.533 Sum_probs=21.9
Q ss_pred CCcccccccccccCCCceEecCCCCccccchhHHH
Q 014794 150 GALECAVCLSEFEDDETLRLLPKCDHVFHPHCIDV 184 (418)
Q Consensus 150 ~~~~CaICl~~f~~~~~~r~lp~C~H~FH~~CI~~ 184 (418)
....|.||....-.-.+.. -+.|...||..|...
T Consensus 54 ~~~~C~iC~~~~G~~i~C~-~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKSGGACIKCS-HPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCCCceeEEcC-CCCCCcCCCHHHHHH
Confidence 4668999988722211111 124888999999766
No 190
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=23.15 E-value=1.1e+02 Score=27.34 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 014794 76 PSMAIIILVLISTFFIVAMFSIYVRHCS 103 (418)
Q Consensus 76 ~s~~iiiivlv~~~fil~~~~i~~r~c~ 103 (418)
-.+.|++++.+..||++++++-|+|-..
T Consensus 43 ~~lYIL~vmgfFgff~~gImlsyvRSKK 70 (129)
T PF02060_consen 43 EYLYILVVMGFFGFFTVGIMLSYVRSKK 70 (129)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3577888888888888888888887544
No 191
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=23.12 E-value=65 Score=28.84 Aligned_cols=15 Identities=33% Similarity=0.831 Sum_probs=11.5
Q ss_pred CCCCCCcccccCCCC
Q 014794 189 HVTCPVCRANLTPES 203 (418)
Q Consensus 189 ~~tCP~CR~~l~~~~ 203 (418)
...||.|...+...+
T Consensus 123 ~f~Cp~Cg~~l~~~d 137 (147)
T smart00531 123 TFTCPRCGEELEEDD 137 (147)
T ss_pred cEECCCCCCEEEEcC
Confidence 478999999886543
No 192
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=22.93 E-value=71 Score=25.15 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014794 78 MAIIILVLISTFFIVAMF 95 (418)
Q Consensus 78 ~~iiiivlv~~~fil~~~ 95 (418)
|||++.|++++++++.+.
T Consensus 1 MWIiiSIvLai~lLI~l~ 18 (66)
T PF07438_consen 1 MWIIISIVLAIALLISLS 18 (66)
T ss_pred ChhhHHHHHHHHHHHHHh
Confidence 567777777665554433
No 193
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=22.67 E-value=1.1e+02 Score=25.14 Aligned_cols=54 Identities=15% Similarity=0.383 Sum_probs=19.9
Q ss_pred CCcccccccccccC---CCceEecCCCCccccchhHHHHHh-cCCCCCCcccccCCCC
Q 014794 150 GALECAVCLSEFED---DETLRLLPKCDHVFHPHCIDVWLA-SHVTCPVCRANLTPES 203 (418)
Q Consensus 150 ~~~~CaICl~~f~~---~~~~r~lp~C~H~FH~~CI~~WL~-~~~tCP~CR~~l~~~~ 203 (418)
....|.||-+++-. ++.....-.|+--.+..|.+-=.+ .++.||-|+......+
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~k 65 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHK 65 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----T
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccccc
Confidence 45589999998753 333322224666667777664333 4788999998776433
No 194
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=22.50 E-value=74 Score=32.25 Aligned_cols=15 Identities=40% Similarity=0.625 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 014794 78 MAIIILVLISTFFIV 92 (418)
Q Consensus 78 ~~iiiivlv~~~fil 92 (418)
.+.+++||+.+++++
T Consensus 259 ~aSiiaIliIVLIMv 273 (299)
T PF02009_consen 259 IASIIAILIIVLIMV 273 (299)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444333333
No 195
>PHA02831 EEV host range protein; Provisional
Probab=22.31 E-value=87 Score=31.26 Aligned_cols=25 Identities=20% Similarity=0.572 Sum_probs=18.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Q 014794 75 DPSMAIIILVLISTFFIVAMFSIYV 99 (418)
Q Consensus 75 ~~s~~iiiivlv~~~fil~~~~i~~ 99 (418)
+.+++|+|+.+++.+|++++++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (268)
T PHA02831 229 NIITIIILLSIICFIFVLGLIALFL 253 (268)
T ss_pred ceEeehhHHHHHHHHHHHHHHHHhh
Confidence 4467777777777777777776655
No 196
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=21.91 E-value=64 Score=20.91 Aligned_cols=29 Identities=21% Similarity=0.550 Sum_probs=10.3
Q ss_pred ccccccccccCCCceEecCCCCccccchhH
Q 014794 153 ECAVCLSEFEDDETLRLLPKCDHVFHPHCI 182 (418)
Q Consensus 153 ~CaICl~~f~~~~~~r~lp~C~H~FH~~CI 182 (418)
.|.+|-..... .....-+.|.-.+|..|+
T Consensus 2 ~C~~C~~~~~~-~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG-GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC-CceEECccCCCccChhcC
Confidence 47888887666 333344459999999885
No 197
>PRK14907 rplD 50S ribosomal protein L4; Provisional
Probab=21.47 E-value=63 Score=32.71 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=11.8
Q ss_pred CcccccccccccHHH
Q 014794 289 GVSVERYTLRFPDEV 303 (418)
Q Consensus 289 ~~~~eR~TLrlPe~v 303 (418)
...+..+|+.|+++|
T Consensus 96 ~~~~~~~~ieL~~~v 110 (295)
T PRK14907 96 SNKLFKNTSKLPKKL 110 (295)
T ss_pred hcccccceEEeCHHH
Confidence 346788889999887
No 198
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=21.42 E-value=47 Score=26.29 Aligned_cols=13 Identities=23% Similarity=0.759 Sum_probs=9.1
Q ss_pred cccchhHHHHHhc
Q 014794 176 VFHPHCIDVWLAS 188 (418)
Q Consensus 176 ~FH~~CI~~WL~~ 188 (418)
-||..|+..|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999753
No 199
>PRK02935 hypothetical protein; Provisional
Probab=21.32 E-value=4.1e+02 Score=23.02 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=14.7
Q ss_pred cCCCCCCcccccCCCCccccc
Q 014794 188 SHVTCPVCRANLTPESNEKVK 208 (418)
Q Consensus 188 ~~~tCP~CR~~l~~~~~~~~~ 208 (418)
+-..|..|..++..+++.+.+
T Consensus 85 rvD~CM~C~~PLTLd~~legk 105 (110)
T PRK02935 85 RVDACMHCNQPLTLDRSLEGK 105 (110)
T ss_pred ceeecCcCCCcCCcCcccccc
Confidence 345699999999876654433
No 200
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=21.30 E-value=32 Score=25.44 Aligned_cols=11 Identities=36% Similarity=0.996 Sum_probs=5.9
Q ss_pred CCCCcccccCC
Q 014794 191 TCPVCRANLTP 201 (418)
Q Consensus 191 tCP~CR~~l~~ 201 (418)
.||+|..++..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 79999998864
No 201
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=21.03 E-value=49 Score=36.41 Aligned_cols=35 Identities=23% Similarity=0.613 Sum_probs=25.0
Q ss_pred CCCcccccccccccC-----------CCceEecCCCCccccchhHHHH
Q 014794 149 KGALECAVCLSEFED-----------DETLRLLPKCDHVFHPHCIDVW 185 (418)
Q Consensus 149 ~~~~~CaICl~~f~~-----------~~~~r~lp~C~H~FH~~CI~~W 185 (418)
+....|+||.+.|+. .+.+.+. =|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le--~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLE--FGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeec--cCceeeccccchH
Confidence 356789999999974 1233332 4889999998874
No 202
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=20.64 E-value=2.7e+02 Score=28.03 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=14.1
Q ss_pred hhhcccCchhHHHHHHHHHH
Q 014794 27 MRFENFNPSRWIIHVTWLLL 46 (418)
Q Consensus 27 ~~~~~F~~~~~~~~~~~l~l 46 (418)
+....++|-+|+...+.++.
T Consensus 223 ~~~~s~~Plr~~~~~g~~~~ 242 (325)
T PRK10714 223 VTCLTTTPLRLLSLLGSIIA 242 (325)
T ss_pred HHHhchhhHHHHHHHHHHHH
Confidence 44567888899888765553
No 203
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=20.51 E-value=56 Score=33.28 Aligned_cols=42 Identities=26% Similarity=0.467 Sum_probs=28.6
Q ss_pred CCccccccccccc-------CCCceEecCCCCccccchhHHHHHhcCCCCCCccc
Q 014794 150 GALECAVCLSEFE-------DDETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRA 197 (418)
Q Consensus 150 ~~~~CaICl~~f~-------~~~~~r~lp~C~H~FH~~CI~~WL~~~~tCP~CR~ 197 (418)
....|+||-..=. ..+..| |.+|.-|=..|-.....||.|-.
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~R------yL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLR------YLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCce------EEEcCCCCCcccccCccCCCCCC
Confidence 4578999977621 112233 34455688889888899999964
No 204
>PF07330 DUF1467: Protein of unknown function (DUF1467); InterPro: IPR009935 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=20.49 E-value=4.9e+02 Score=21.48 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhccccccccCCCCC--CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 014794 41 VTWLLLLWPTLYDYASAQTVTQPP--ANPDGLYTTLDPSMAIIILVLISTFFIVAMFSIY 98 (418)
Q Consensus 41 ~~~l~l~~~~~~~~~~~q~~s~~~--~~~~~~~~~~~~s~~iiiivlv~~~fil~~~~i~ 98 (418)
..|...++..+......|...... ........++..-.-.++.-++++++..+++.++
T Consensus 12 viWw~~lF~vLP~gvrtq~E~g~vv~Gt~~sAP~~~~l~rk~~~TTiiaavi~~~~~~~~ 71 (85)
T PF07330_consen 12 VIWWIVLFAVLPFGVRTQDEAGEVVPGTDPSAPANPRLKRKALITTIIAAVIFAIIYLII 71 (85)
T ss_pred HHHHHHHHHHccCCccccCcCCCcCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356555556665556666433221 1222223344443344444444444444444443
No 205
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=20.35 E-value=34 Score=31.63 Aligned_cols=30 Identities=30% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCc
Q 014794 77 SMAIIILVLISTFFIVAMFSIYVRHCSDSR 106 (418)
Q Consensus 77 s~~iiiivlv~~~fil~~~~i~~r~c~~~~ 106 (418)
.+-||+.+|+++.|+-+++++++|++..|+
T Consensus 131 LVGIIVGVLlaIG~igGIIivvvRKmSGRy 160 (162)
T PF05808_consen 131 LVGIIVGVLLAIGFIGGIIIVVVRKMSGRY 160 (162)
T ss_dssp ------------------------------
T ss_pred eeeehhhHHHHHHHHhheeeEEeehhcccc
Confidence 467788899999999999999998876554
No 206
>PF14979 TMEM52: Transmembrane 52
Probab=20.33 E-value=1.4e+02 Score=27.38 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=17.2
Q ss_pred CCChHHHHH-HHHHHHHHHHHHHHHHHHh-ccccCc
Q 014794 73 TLDPSMAII-ILVLISTFFIVAMFSIYVR-HCSDSR 106 (418)
Q Consensus 73 ~~~~s~~ii-iivlv~~~fil~~~~i~~r-~c~~~~ 106 (418)
.+..-|.|. |++++.++++.++...++| .|.+++
T Consensus 15 ~W~~LWyIwLill~~~llLLCG~ta~C~rfCClrk~ 50 (154)
T PF14979_consen 15 RWSSLWYIWLILLIGFLLLLCGLTASCVRFCCLRKQ 50 (154)
T ss_pred ceehhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333334443 3333444555667777777 444443
No 207
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=20.29 E-value=1.7e+02 Score=28.78 Aligned_cols=6 Identities=33% Similarity=0.755 Sum_probs=2.6
Q ss_pred hccccC
Q 014794 100 RHCSDS 105 (418)
Q Consensus 100 r~c~~~ 105 (418)
|-|.+.
T Consensus 212 r~C~k~ 217 (259)
T PF07010_consen 212 RMCWKT 217 (259)
T ss_pred HHhhcC
Confidence 344443
No 208
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=20.20 E-value=3.2e+02 Score=26.60 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 014794 78 MAIIILVLISTFFIVAMFSIYVRHC 102 (418)
Q Consensus 78 ~~iiiivlv~~~fil~~~~i~~r~c 102 (418)
++-++-++++++|++++++.+.++.
T Consensus 65 ~~~l~qmi~aL~~VI~Liy~l~rwL 89 (219)
T PRK13415 65 AFDFVKLIGATLFVIFLIYALVKWL 89 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544444433
No 209
>TIGR02269 Myxococcus xanthus paralogous lipoprotein family TIGR02269. This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N-terminus; the others are predicted lipoproteins. The function is unknown.
Probab=20.17 E-value=51 Score=31.37 Aligned_cols=20 Identities=25% Similarity=0.632 Sum_probs=17.4
Q ss_pred CcccccccccccHHHHHHHH
Q 014794 289 GVSVERYTLRFPDEVRKQLM 308 (418)
Q Consensus 289 ~~~~eR~TLrlPe~v~~~~~ 308 (418)
|-+.--|||.+|+||+++|=
T Consensus 144 Gv~iHd~Tl~Ip~~vHrriH 163 (211)
T TIGR02269 144 GVKIHDFTLVIPRHTHRRIH 163 (211)
T ss_pred CCChhheeeeccHHHHHHhh
Confidence 55788899999999999973
No 210
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=20.04 E-value=1.2e+02 Score=33.98 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 014794 78 MAIIILVLISTFFIVAMF 95 (418)
Q Consensus 78 ~~iiiivlv~~~fil~~~ 95 (418)
+|||+.|++-++++++++
T Consensus 269 lWII~gVlvPv~vV~~Ii 286 (684)
T PF12877_consen 269 LWIIAGVLVPVLVVLLII 286 (684)
T ss_pred eEEEehHhHHHHHHHHHH
Confidence 455555555444444333
Done!