BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014795
(418 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GAK|A Chain A, Crystal Structure Of Acyl-Acp Thioesterase From Spirosoma
Linguale
Length = 250
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 127/269 (47%), Gaps = 27/269 (10%)
Query: 136 GFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLI 195
FI F++R YE A G SI L N QE+A +D G G +A+K +
Sbjct: 5 AFIQTDTFTLRGYECDAFGRXSIPALXNLXQESA-----NRNAIDYGIGIAD-LAQKGVG 58
Query: 196 WVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMN 255
W + R + + +YP + D + + T+ + K + RD+ + A G L A S W++ +
Sbjct: 59 WXLXRFCLRIHQYPRYGDTIQLXTYPTTVDKYFIHRDFRVL-ATDGTLLADARSTWLVFS 117
Query: 256 KLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLPKLGD----STADYVRRGLTPRWSD 311
R +PD +RQ P N DP+ LP D S A + + W +
Sbjct: 118 XEKRSXVPLPDFIRQLSPP--ANVDPL-----PALPLKPDFQTASFATAASKSVQVGWLN 170
Query: 312 LDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGN 371
+D NQHVNNV Y+ W+LE +I+++ ++A + L YR E L S+ +V++ D
Sbjct: 171 IDQNQHVNNVAYVQWLLEGVDSEIVQTREIAEIDLVYRTESHWHDWL-SVQSVTETDNSV 229
Query: 372 LVNLGSVECQHLLRLEEGAEVLRARTEWR 400
L + + E G +VL AR+ WR
Sbjct: 230 L--------HRISQTESGKDVLLARSRWR 250
>pdb|2OWN|A Chain A, Crystal Structure Of Oleoyl Thioesterase (Putative)
(Np_784467.1) From Lactobacillus Plantarum At 2.00 A
Resolution
pdb|2OWN|B Chain B, Crystal Structure Of Oleoyl Thioesterase (Putative)
(Np_784467.1) From Lactobacillus Plantarum At 2.00 A
Resolution
Length = 262
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 123/278 (44%), Gaps = 28/278 (10%)
Query: 128 GIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATP 187
G + + ++ + I YE G A++ TL++ + + + DA T
Sbjct: 1 GXATLGANASLYSEQHRITYYECDRTGRATLTTLID------IAVLASEDQSDALGLTTE 54
Query: 188 AMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRA 247
+ + WVVT+ + + R P ++VV + SA R++ IR+A G+ L
Sbjct: 55 XVQSHGVGWVVTQYAIDITRXPRQDEVVTIAVRGSAYNPYFAYREFWIRDAD-GQQLAYI 113
Query: 248 TSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLPKL-----GDSTADYVR 302
TS+WV ++ TRR+ K+ E+ + PY E +++P+L ++T +
Sbjct: 114 TSIWVXXSQTTRRIVKILPEL---VAPY-------QSEVVKRIPRLPRPISFEATDTTIT 163
Query: 303 RGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVLQSLT 362
+ R+ D+D N+HVNN Y W++++ P L H L V + Y E + +
Sbjct: 164 KPYHVRFFDIDPNRHVNNAHYFDWLVDTLPATFLLQHDLVHVDVRYENEVKYGQTVTAHA 223
Query: 363 AVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWR 400
+ ++ + V HL+ +++ + +WR
Sbjct: 224 NILPSEVAD-----QVTTSHLIEVDD-EKCCEVTIQWR 255
>pdb|2ESS|A Chain A, Crystal Structure Of An Acyl-Acp Thioesterase
(Np_810988.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.90 A Resolution
Length = 248
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 98/209 (46%), Gaps = 12/209 (5%)
Query: 143 FSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQ 202
F + + +G + L NHL A H D GFG + + N WV++R+
Sbjct: 13 FVAEPFHVDFNGRLTXGVLGNHLLNCAGFHAS-----DRGFG-IATLNEDNYTWVLSRLA 66
Query: 203 VVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLS 262
+ +D P + +V+TWV + R++ + + K G+ + A S+W +N TR+ +
Sbjct: 67 IELDEXPYQYEKFSVQTWVENVYRLFTDRNFAVID-KDGKKIGYARSVWAXINLNTRKPA 125
Query: 263 KMPDEVRQEIEPYFLNSDPVVDEDSRKLPKLGDSTADYVRRGLTPRWSDLDVNQHVNNVK 322
+ I Y + +++ SR T++ LT ++SD+D+N HVN+++
Sbjct: 126 DLLALHGGSIVDYICDEPCPIEKPSRI-----KVTSNQPVATLTAKYSDIDINGHVNSIR 180
Query: 323 YIGWILESAPQQILESHQLASVTLEYRRE 351
YI IL+ P ++ ++ ++ Y E
Sbjct: 181 YIEHILDLFPIELYQTKRIRRFEXAYVAE 209
>pdb|3IX9|A Chain A, Crystal Structure Of Streptococcus Pneumoniae
Dihydrofolate Reductase - Sp9 Mutant
pdb|3IX9|B Chain B, Crystal Structure Of Streptococcus Pneumoniae
Dihydrofolate Reductase - Sp9 Mutant
Length = 190
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 162 MNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWV 221
+ H +ET LNH + G + + K+ + + + +D T++DV +V W
Sbjct: 51 LQHFKETTLNHAILMGRVTFDGMGRRLLPKRETLILTRNPEEKIDGVATFHDVQSVLDWY 110
Query: 222 SASGKN 227
SA KN
Sbjct: 111 SAQEKN 116
>pdb|2FUJ|A Chain A, A Putative Acyl-Coa Thioesterase From Xanthomonas
Campestris (Xc229)
Length = 137
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 302 RRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQIL 336
R ++ RW D+D HVNN KYI ++ E+ + +L
Sbjct: 12 RVPISVRWRDMDSMGHVNNAKYISYLEEARVRWML 46
>pdb|2VWS|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWS|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12
pdb|2VWT|A Chain A, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|B Chain B, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
pdb|2VWT|C Chain C, Crystal Structure Of Yfau, A Metal Ion Dependent Class Ii
Aldolase From Escherichia Coli K12 - Mg-Pyruvate Product
Complex
Length = 267
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 167 ETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGK 226
ET++ + AG P MA++ L W + V VD ++D ++ + SGK
Sbjct: 200 ETSIRRIRAAGKAAGFLAVAPDMAQQCLAWGANFVAVGVDTM-LYSDALDQRLAMFKSGK 258
Query: 227 NGMR 230
NG R
Sbjct: 259 NGPR 262
>pdb|2G33|C Chain C, Human Hepatitis B Virus T4 Capsid, Strain Adyw
pdb|2G33|D Chain D, Human Hepatitis B Virus T4 Capsid, Strain Adyw
pdb|2G33|B Chain B, Human Hepatitis B Virus T4 Capsid, Strain Adyw
pdb|2G33|A Chain A, Human Hepatitis B Virus T4 Capsid, Strain Adyw
pdb|2G34|C Chain C, Human Hepatitis B Virus T4 Capsid Strain Adyw Complexed
With Assembly Effector Hap1
pdb|2G34|D Chain D, Human Hepatitis B Virus T4 Capsid Strain Adyw Complexed
With Assembly Effector Hap1
pdb|2G34|B Chain B, Human Hepatitis B Virus T4 Capsid Strain Adyw Complexed
With Assembly Effector Hap1
pdb|2G34|A Chain A, Human Hepatitis B Virus T4 Capsid Strain Adyw Complexed
With Assembly Effector Hap1
Length = 150
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 211 WNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLT 258
W D++ + TWV + ++ RD ++ T L LW ++ LT
Sbjct: 62 WGDLMTLATWVGTNLEDPASRDLVVSYVNTNVGLKFRQLLWFHISALT 109
>pdb|1NJK|A Chain A, Crystal Structure Of Ybaw Probable Thioesterase From
Escherichia Coli
pdb|1NJK|B Chain B, Crystal Structure Of Ybaw Probable Thioesterase From
Escherichia Coli
pdb|1NJK|C Chain C, Crystal Structure Of Ybaw Probable Thioesterase From
Escherichia Coli
pdb|1NJK|D Chain D, Crystal Structure Of Ybaw Probable Thioesterase From
Escherichia Coli
Length = 156
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 308 RWSDLDVNQHVNNVKYIGWILE--------SAPQQILESHQLASVTLEYRRECGRDSVLQ 359
R LDV QHVNN +Y+ ++ E S Q +H +A V + R +VL
Sbjct: 30 RGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQWXTAHNIAFVVVNININYRRPAVLS 89
Query: 360 SLTAVSDK 367
L ++ +
Sbjct: 90 DLLTITSQ 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,434,745
Number of Sequences: 62578
Number of extensions: 445640
Number of successful extensions: 982
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 966
Number of HSP's gapped (non-prelim): 17
length of query: 418
length of database: 14,973,337
effective HSP length: 101
effective length of query: 317
effective length of database: 8,652,959
effective search space: 2742988003
effective search space used: 2742988003
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)