BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014795
(418 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SQI3|FATB_GOSHI Palmitoyl-acyl carrier protein thioesterase, chloroplastic
OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1
Length = 413
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/418 (75%), Positives = 352/418 (84%), Gaps = 9/418 (2%)
Query: 1 MVATAAASAFFPVSSPSGDSVAKTKNLGSANLGGIKSKSS--SGSLQVKANAQAPSKING 58
MVATA SAFFPV+S S +K K LGS IKSK S SGSLQVKANAQAP KING
Sbjct: 1 MVATAVTSAFFPVTSSPDSSDSKNKKLGS-----IKSKPSVSSGSLQVKANAQAPPKING 55
Query: 59 TSVGLTTPAESLKNGDISTSSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPR 118
T V TTP E KN D SSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPR
Sbjct: 56 T-VASTTPVEGSKNDD-GASSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPR 113
Query: 119 RSDMLVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGL 178
R DM++DPFGIGKIVQDG +F QNFSIRSYEIGAD TASIETLMNHLQETA+NH +AGL
Sbjct: 114 RPDMVIDPFGIGKIVQDGLVFSQNFSIRSYEIGADQTASIETLMNHLQETAINHCRSAGL 173
Query: 179 LDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNA 238
L GFGATP M KKNLIWVVTRMQVVVDRYPTW DVV V+TWVSASGKNGMRRDWL+ N+
Sbjct: 174 LGEGFGATPEMCKKNLIWVVTRMQVVVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVSNS 233
Query: 239 KTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLPKLGDSTA 298
+TGE LTRATS+WVMMNKLTRRLSK+P+EVR EIEP+F+NSDPV+ EDS+KL KL DSTA
Sbjct: 234 ETGEILTRATSVWVMMNKLTRRLSKIPEEVRGEIEPFFMNSDPVLAEDSQKLVKLDDSTA 293
Query: 299 DYVRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVL 358
++V +GLTP+WSDLDVNQHVNNVKYIGWILESAP ILESH+L+++TLEYRRECGRDSVL
Sbjct: 294 EHVCKGLTPKWSDLDVNQHVNNVKYIGWILESAPLPILESHELSALTLEYRRECGRDSVL 353
Query: 359 QSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRPKDAHNFGNVGPIPAE 416
QSLT VSD + N VN+G CQHLLRL++GAE++R RT WRPK A + N+ I A+
Sbjct: 354 QSLTTVSDSNTENAVNVGEFNCQHLLRLDDGAEIVRGRTRWRPKHAKSSANMDQITAK 411
>sp|Q9SJE2|FATB_ARATH Palmitoyl-acyl carrier protein thioesterase, chloroplastic
OS=Arabidopsis thaliana GN=FATB PE=1 SV=1
Length = 412
Score = 614 bits (1583), Expect = e-175, Method: Compositional matrix adjust.
Identities = 304/402 (75%), Positives = 339/402 (84%)
Query: 1 MVATAAASAFFPVSSPSGDSVAKTKNLGSANLGGIKSKSSSGSLQVKANAQAPSKINGTS 60
MVAT+A S+FFPV S S D K +GS NL G+ S +SG ++VK NAQAP KING
Sbjct: 1 MVATSATSSFFPVPSSSLDPNGKGNKIGSTNLAGLNSAPNSGRMKVKPNAQAPPKINGKK 60
Query: 61 VGLTTPAESLKNGDISTSSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRS 120
VGL + ++ ++S P PRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRS
Sbjct: 61 VGLPGSVDIVRTDTETSSHPAPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKPRRS 120
Query: 121 DMLVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLD 180
DMLVDPFGIG+IVQDG +FRQNFSIRSYEIGAD +ASIET+MNHLQETALNHV TAGLL
Sbjct: 121 DMLVDPFGIGRIVQDGLVFRQNFSIRSYEIGADRSASIETVMNHLQETALNHVKTAGLLG 180
Query: 181 AGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKT 240
GFG+TP M KKNLIWVVTRMQVVVD+YPTW DVV V+TWVS SGKNGMRRDWL+R+ T
Sbjct: 181 DGFGSTPEMFKKNLIWVVTRMQVVVDKYPTWGDVVEVDTWVSQSGKNGMRRDWLVRDCNT 240
Query: 241 GETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLPKLGDSTADY 300
GETLTRA+S+WVMMNKLTRRLSK+P+EVR EIEPYF+NSDPV+ EDSRKL K+ D TADY
Sbjct: 241 GETLTRASSVWVMMNKLTRRLSKIPEEVRGEIEPYFVNSDPVLAEDSRKLTKIDDKTADY 300
Query: 301 VRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVLQS 360
VR GLTPRWSDLDVNQHVNNVKYIGWILESAP I+E +L S+TLEYRRECGRDSVLQS
Sbjct: 301 VRSGLTPRWSDLDVNQHVNNVKYIGWILESAPVGIMERQKLKSMTLEYRRECGRDSVLQS 360
Query: 361 LTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRPK 402
LTAV+ DIGNL G VECQHLLRL++GAEV+R RTEW K
Sbjct: 361 LTAVTGCDIGNLATAGDVECQHLLRLQDGAEVVRGRTEWSSK 402
>sp|Q39513|FATB_CUPHO Palmitoyl-acyl carrier protein thioesterase, chloroplastic
OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1
Length = 415
Score = 566 bits (1459), Expect = e-160, Method: Compositional matrix adjust.
Identities = 277/407 (68%), Positives = 334/407 (82%), Gaps = 12/407 (2%)
Query: 1 MVATAAASAFFPVSSPSGDSVAKTKNLGS--ANLGGIKSKSS-SGSLQVKANAQAPSKIN 57
MVATAA+SAFFP+ PS D+ ++ LG+ ++L +K KS+ +G LQVKANA AP KIN
Sbjct: 1 MVATAASSAFFPL--PSADTSSRPGKLGNKPSSLSPLKPKSTPNGGLQVKANASAPPKIN 58
Query: 58 GTSVGLTTPAESLKNGDISTSSPPPRTFINQLPDWSMLLAAITTIFLAAEKQWMMLDWKP 117
G+ VGL + LK + + S+PPPRTFINQLPDWSMLLAAITT+FLAAEKQWMMLDWKP
Sbjct: 59 GSPVGLKS--GGLKTQEDAHSAPPPRTFINQLPDWSMLLAAITTVFLAAEKQWMMLDWKP 116
Query: 118 RRSDMLVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAG 177
+R DMLVDPFG+G IVQDG +FRQNFSIRSYEIGAD TASIET+MNHLQETALNHV AG
Sbjct: 117 KRPDMLVDPFGLGSIVQDGLVFRQNFSIRSYEIGADRTASIETVMNHLQETALNHVKIAG 176
Query: 178 LLDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRN 237
L + GFG TP M K++LIWVV +MQV+V+RYPTW D V V TWV+ SGKNGMRRDWLI +
Sbjct: 177 LSNDGFGRTPEMYKRDLIWVVAKMQVMVNRYPTWGDTVEVNTWVAKSGKNGMRRDWLISD 236
Query: 238 AKTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVVDEDSRKLPKLGDST 297
TGE LTRA+S+WVMMN+ TRRLSK+PDEVR EIEP+F++S PV+++D RKLPKL + T
Sbjct: 237 CNTGEILTRASSVWVMMNQKTRRLSKIPDEVRNEIEPHFVDSPPVIEDDDRKLPKLDEKT 296
Query: 298 ADYVRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSV 357
AD +R+GLTPRW+DLDVNQHVNNVKYIGWILES P ++LE+ +L S+TLEYRRECGR+SV
Sbjct: 297 ADSIRKGLTPRWNDLDVNQHVNNVKYIGWILESTPPEVLETQELCSLTLEYRRECGRESV 356
Query: 358 LQSLTAVSDKDIGNLVNLGSVECQHLLRLEEGAEVLRARTEWRPKDA 404
L+SLTA+ G GS + QHLLRLE+G E+++ RTEWRPK+
Sbjct: 357 LESLTAMDPSGGG----YGS-QFQHLLRLEDGGEIVKGRTEWRPKNG 398
>sp|Q39473|FATB_CINCA Myristoyl-acyl carrier protein thioesterase, chloroplastic
OS=Cinnamomum camphora GN=FATB1 PE=2 SV=1
Length = 382
Score = 404 bits (1037), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/389 (55%), Positives = 264/389 (67%), Gaps = 35/389 (8%)
Query: 34 GIKSKSSSGSLQVKA-NAQAPSK-INGTSVGLTTPAESLKNGDISTSSPPPRTFINQLPD 91
G+K +SS LQ++A NAQ K INGT T ESLK +LPD
Sbjct: 24 GMKPRSSD--LQLRAGNAQTSLKMINGTKFSYT---ESLK----------------KLPD 62
Query: 92 WSMLLAAITTIFLAAEKQWMMLDWKPRRS--DMLVDPFGIGKIVQDGFIFRQNFSIRSYE 149
WSML A ITTIF AAEKQW L+WKP+ + +L D FG G +FR+ F+IRSYE
Sbjct: 63 WSMLFAVITTIFSAAEKQWTNLEWKPKPNPPQLLDDHFG-----PHGLVFRRTFAIRSYE 117
Query: 150 IGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRYP 209
+G D + SI +MNHLQE ALNH + G+L GFG T M+K++LIWVV R V V+RYP
Sbjct: 118 VGPDRSTSIVAVMNHLQEAALNHAKSVGILGDGFGTTLEMSKRDLIWVVKRTHVAVERYP 177
Query: 210 TWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEVR 269
W D V VE WV ASG NG R D+L+R+ KTGE LTR TSL VMMN TRRLSK+P+EVR
Sbjct: 178 AWGDTVEVECWVGASGNNGRRHDFLVRDCKTGEILTRCTSLSVMMNTRTRRLSKIPEEVR 237
Query: 270 QEIEPYFLNSDPVVDEDSRKLPKLGDSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWILE 329
EI P F+++ V DE+ +K KL DSTADY++ GLTPRW+DLD+NQHVNN+KY+ WILE
Sbjct: 238 GEIGPAFIDNVAVKDEEIKKPQKLNDSTADYIQGGLTPRWNDLDINQHVNNIKYVDWILE 297
Query: 330 SAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEEG 389
+ P I ESH ++S T+EYRREC DSVLQSLT VS G G V C+HLL+LE G
Sbjct: 298 TVPDSIFESHHISSFTIEYRRECTMDSVLQSLTTVS----GGSSEAGLV-CEHLLQLEGG 352
Query: 390 AEVLRARTEWRPKDAHNFGNVGPIPAEST 418
+EVLRA+TEWRPK +F + IPAES+
Sbjct: 353 SEVLRAKTEWRPKLTDSFRGISVIPAESS 381
>sp|Q41635|FATB_UMBCA Lauroyl-acyl carrier protein thioesterase, chloroplastic
OS=Umbellularia californica GN=FATB1 PE=1 SV=1
Length = 382
Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/388 (54%), Positives = 262/388 (67%), Gaps = 37/388 (9%)
Query: 34 GIKSKSSSGSLQVKANAQAPSK---INGTSVGLTTPAESLKNGDISTSSPPPRTFINQLP 90
G+K +SS LQ++A AP+ INGT T ESLK +LP
Sbjct: 24 GMKPRSSD--LQLRA-GNAPTSLKMINGTKFSYT---ESLK----------------RLP 61
Query: 91 DWSMLLAAITTIFLAAEKQWMMLDWKPRRS--DMLVDPFGIGKIVQDGFIFRQNFSIRSY 148
DWSML A ITTIF AAEKQW L+WKP+ +L D FG+ G +FR+ F+IRSY
Sbjct: 62 DWSMLFAVITTIFSAAEKQWTNLEWKPKPKLPQLLDDHFGL-----HGLVFRRTFAIRSY 116
Query: 149 EIGADGTASIETLMNHLQETALNHVMTAGLLDAGFGATPAMAKKNLIWVVTRMQVVVDRY 208
E+G D + SI +MNH+QE LNH + G+L GFG T M+K++L+WVV R V V+RY
Sbjct: 117 EVGPDRSTSILAVMNHMQEATLNHAKSVGILGDGFGTTLEMSKRDLMWVVRRTHVAVERY 176
Query: 209 PTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETLTRATSLWVMMNKLTRRLSKMPDEV 268
PTW D V VE W+ ASG NGMRRD+L+R+ KTGE LTR TSL V+MN TRRLS +PDEV
Sbjct: 177 PTWGDTVEVECWIGASGNNGMRRDFLVRDCKTGEILTRCTSLSVLMNTRTRRLSTIPDEV 236
Query: 269 RQEIEPYFLNSDPVVDEDSRKLPKLGDSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWIL 328
R EI P F+++ V D++ +KL KL DSTADY++ GLTPRW+DLDVNQHVNN+KY+ W+
Sbjct: 237 RGEIGPAFIDNVAVKDDEIKKLQKLNDSTADYIQGGLTPRWNDLDVNQHVNNLKYVAWVF 296
Query: 329 ESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVECQHLLRLEE 388
E+ P I ESH ++S TLEYRREC RDSVL+SLT VS G G V C HLL+LE
Sbjct: 297 ETVPDSIFESHHISSFTLEYRRECTRDSVLRSLTTVS----GGSSEAGLV-CDHLLQLEG 351
Query: 389 GAEVLRARTEWRPKDAHNFGNVGPIPAE 416
G+EVLRARTEWRPK +F + IPAE
Sbjct: 352 GSEVLRARTEWRPKLTDSFRGISVIPAE 379
>sp|Q9SV64|FATA2_ARATH Oleoyl-acyl carrier protein thioesterase 2, chloroplastic
OS=Arabidopsis thaliana GN=FATA2 PE=2 SV=1
Length = 367
Score = 262 bits (670), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 136/300 (45%), Positives = 191/300 (63%), Gaps = 22/300 (7%)
Query: 125 DPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAGFG 184
D G++++DGF +++ F +RSYE+G + TA+IET+ N LQE A NHV G GF
Sbjct: 69 DRLRFGRLMEDGFSYKEKFIVRSYEVGINKTATIETIANLLQEVACNHVQNVGFSTDGFA 128
Query: 185 ATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGETL 244
T M K +LIWV RM + + +YP W+DVV +ETW + G+ G RRDW++++ TGE +
Sbjct: 129 TTLTMRKLHLIWVTARMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDCATGEVI 188
Query: 245 TRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVV---DEDS---RKLPKLGDSTA 298
RATS WVMMN+ TRRL ++ DEVR E F +P + +E++ +K+PKL D A
Sbjct: 189 GRATSKWVMMNQDTRRLQRVTDEVRDEY-LVFCPPEPRLAFPEENNSSLKKIPKLEDP-A 246
Query: 299 DYVRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVL 358
Y GL PR +DLD+NQHVNNV YIGW+LES PQ+I+++H+L +TL+YRREC +D ++
Sbjct: 247 QYSMLGLKPRRADLDMNQHVNNVTYIGWVLESIPQEIIDTHELKVITLDYRRECQQDDIV 306
Query: 359 QSLTA------VSDKDIGNLVNLGSVECQ-------HLLRL-EEGAEVLRARTEWRPKDA 404
SLT V K G + S + + H+LRL E G E+ R RT+WR K +
Sbjct: 307 DSLTTSETPNEVVSKLTGTNGSTTSSKREHNESHFLHILRLSENGQEINRGRTQWRKKSS 366
>sp|Q42561|FATA1_ARATH Oleoyl-acyl carrier protein thioesterase 1, chloroplastic
OS=Arabidopsis thaliana GN=FATA PE=1 SV=1
Length = 362
Score = 258 bits (658), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 133/295 (45%), Positives = 185/295 (62%), Gaps = 18/295 (6%)
Query: 123 LVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGLLDAG 182
L D +G + +DG +++ F +RSYE+G++ TA++ET+ N LQE NH + G G
Sbjct: 68 LADQLRLGSLTEDGLSYKEKFVVRSYEVGSNKTATVETIANLLQEVGCNHAQSVGFSTDG 127
Query: 183 FGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNAKTGE 242
F T M K +LIWV RM + + +YP W DVV +ETW + G+ G RRDW+++++ TGE
Sbjct: 128 FATTTTMRKLHLIWVTARMHIEIYKYPAWGDVVEIETWCQSEGRIGTRRDWILKDSVTGE 187
Query: 243 TLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVV---DEDSR---KLPKLGDS 296
RATS WVMMN+ TRRL K+ D+VR E F +P + +E++R K+PKL D
Sbjct: 188 VTGRATSKWVMMNQDTRRLQKVSDDVRDEY-LVFCPQEPRLAFPEENNRSLKKIPKLEDP 246
Query: 297 TADYVRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECGRDS 356
A Y GL PR +DLD+NQHVNNV YIGW+LES PQ+I+++H+L +TL+YRREC +D
Sbjct: 247 -AQYSMIGLKPRRADLDMNQHVNNVTYIGWVLESIPQEIVDTHELQVITLDYRRECQQDD 305
Query: 357 VLQSLTAVSDKDIGNLVNLGSVECQ--------HLLRLE-EGAEVLRARTEWRPK 402
V+ SLT + +IG + Q HLLRL +G E+ R T WR K
Sbjct: 306 VVDSLTTTT-SEIGGTNGSATSGTQGHNDSQFLHLLRLSGDGQEINRGTTLWRKK 359
>sp|Q42712|FATA_CORSA Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment)
OS=Coriandrum sativum GN=FATA PE=2 SV=1
Length = 369
Score = 257 bits (656), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 131/305 (42%), Positives = 188/305 (61%), Gaps = 22/305 (7%)
Query: 119 RSDMLVDPFGIGKIVQDGFIFRQNFSIRSYEIGADGTASIETLMNHLQETALNHVMTAGL 178
RS L + +G + +DG +++ F +R YE+G + TA++ET+ N LQE NH + G
Sbjct: 62 RSSSLAEKLRLGSLTEDGLSYKEKFIVRCYEVGINKTATVETIANLLQEVGGNHAQSVGF 121
Query: 179 LDAGFGATPAMAKKNLIWVVTRMQVVVDRYPTWNDVVNVETWVSASGKNGMRRDWLIRNA 238
GF TP M K +LIWV RM + + RYP W+DVV +ETW + G+ G RRDW+I++
Sbjct: 122 STDGFATTPTMRKLHLIWVTARMHIEIYRYPAWSDVVEIETWCQSEGRIGTRRDWIIKDF 181
Query: 239 KTGETLTRATSLWVMMNKLTRRLSKMPDEVRQEIEPYFLNSDPVV---DEDSRKLPKLG- 294
T E + RATS WVMMN+ TRRL K+ D+VR E F P + +E+++ L K+
Sbjct: 182 ATDEVIGRATSKWVMMNQDTRRLQKVSDDVRDEY-LVFCPKTPRLSFPEENNKSLKKISK 240
Query: 295 -DSTADYVRRGLTPRWSDLDVNQHVNNVKYIGWILESAPQQILESHQLASVTLEYRRECG 353
+ A + R GL+PR +DLD+NQHVNNV YIGW+LES P+++L +H+L ++TL+YRREC
Sbjct: 241 LEDPAQHSRLGLSPRRADLDMNQHVNNVAYIGWVLESIPKEVLYTHELETITLDYRRECQ 300
Query: 354 RDSVLQSLTAVS-DKDIGNLVNLG--------------SVECQHLLRLE-EGAEVLRART 397
D V+ SLT+ D+D +G S++ H LR+ +G E+ R RT
Sbjct: 301 HDDVVDSLTSPEVDEDTAVTKIIGTNGHAAAATEARDDSLKFLHFLRVSGQGLEINRGRT 360
Query: 398 EWRPK 402
EWR K
Sbjct: 361 EWRKK 365
>sp|A6TW06|GLMM_ALKMQ Phosphoglucosamine mutase OS=Alkaliphilus metalliredigens (strain
QYMF) GN=glmM PE=3 SV=1
Length = 448
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 263 KMPDEVRQEIEPYFLNSDPVVDEDS----RKLPKLGDST---ADYVRRGLTPRWSDLDVN 315
K+PDE+ ++IE Y LN++ + + + K +L ++T DY++ + R+ L +
Sbjct: 118 KLPDEIEEQIETYILNNEEIENRVTGAAVGKRIELKEATRLYMDYLKTTIECRFEGLKIA 177
Query: 316 QHVNNVKYIGWILESAPQQILE 337
+ N G + E+APQ + E
Sbjct: 178 MDLGN----GAVYEAAPQLLKE 195
>sp|Q6FKA5|MED14_CANGA Mediator of RNA polymerase II transcription subunit 14 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=RGR1 PE=3 SV=1
Length = 1037
Score = 35.4 bits (80), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 41 SGSLQVKANAQAPSKINGTSVGLTTPAESLK--NGDISTSSPP--PRTFINQLPDWSMLL 96
+G +++ QAP ++GL +P +++ N + ST+SPP P INQ+P SM++
Sbjct: 18 NGKNEMEVVEQAPIPKTNANIGLKSPVNTVEDVNQEDSTNSPPPIPHVEINQMP-LSMII 76
Query: 97 AAITTIFLAAEKQWM 111
+T + Q+M
Sbjct: 77 RNLTVYTVKEISQYM 91
>sp|A5I6M3|HSLO_CLOBH 33 kDa chaperonin OS=Clostridium botulinum (strain Hall / ATCC 3502
/ NCTC 13319 / Type A) GN=hslO PE=3 SV=1
Length = 296
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 326 WILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVE 379
+I E +ILES + EYR +C R+ V ++L ++ KD+ + + G E
Sbjct: 219 YIFEDMDLKILES-----IVPEYRCDCSREKVERALASIGQKDLKEIYDEGKEE 267
>sp|A7FY92|HSLO_CLOB1 33 kDa chaperonin OS=Clostridium botulinum (strain ATCC 19397 /
Type A) GN=hslO PE=3 SV=1
Length = 296
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 326 WILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVE 379
+I E +ILES + EYR +C R+ V ++L ++ KD+ + + G E
Sbjct: 219 YIFEDMDLKILES-----IVPEYRCDCSREKVERALASIGQKDLKEIYDEGKEE 267
>sp|A7GI10|HSLO_CLOBL 33 kDa chaperonin OS=Clostridium botulinum (strain Langeland / NCTC
10281 / Type F) GN=hslO PE=3 SV=1
Length = 296
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 326 WILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVE 379
+I E +ILES + EYR +C R+ V ++L ++ KD+ + + G E
Sbjct: 219 YIFEDMDLKILES-----IAPEYRCDCSREKVERALASIGQKDLKEIYDEGKEE 267
>sp|B1IMV8|HSLO_CLOBK 33 kDa chaperonin OS=Clostridium botulinum (strain Okra / Type B1)
GN=hslO PE=3 SV=1
Length = 296
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 326 WILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVE 379
+I E +ILES + EYR +C R+ V ++L ++ KD+ + + G E
Sbjct: 219 YIFEDMDLKILES-----IAPEYRCDCSREKVERALASIGQKDLKEIYDEGKEE 267
>sp|Q03LQ1|GLMU_STRTD Bifunctional protein GlmU OS=Streptococcus thermophilus (strain
ATCC BAA-491 / LMD-9) GN=glmU PE=3 SV=1
Length = 460
Score = 32.3 bits (72), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 320 NVKYIGWILESAPQQILESHQLASVTLEYRRECGRDSVLQSLTAVSDKDIGNLVNLGSVE 379
N YI +E AP ++E A+VTL+ + + G +SVL + T + D IG + +
Sbjct: 258 NATYIDVDVEIAPDVVIE----ANVTLKGKTKVGAESVLTNGTYIVDSTIGANTVITNSM 313
Query: 380 CQHLLRLEEGAEV 392
+H + +E+GA V
Sbjct: 314 IEHSV-VEKGATV 325
>sp|Q03573|YLF3_CAEEL Uncharacterized protein C40H1.3 OS=Caenorhabditis elegans
GN=C40H1.3 PE=4 SV=1
Length = 504
Score = 32.0 bits (71), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 141 QNFSIRSYEIGADGTASIETLMNHLQETALNH 172
Q + RS ++GAD AS+ TL N+L+ +L H
Sbjct: 62 QGYDERSSDVGADPLASVRTLRNNLRVMSLEH 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152,527,582
Number of Sequences: 539616
Number of extensions: 6168506
Number of successful extensions: 17502
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 17448
Number of HSP's gapped (non-prelim): 52
length of query: 418
length of database: 191,569,459
effective HSP length: 120
effective length of query: 298
effective length of database: 126,815,539
effective search space: 37791030622
effective search space used: 37791030622
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)