Query 014798
Match_columns 418
No_of_seqs 505 out of 3050
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 08:37:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 1.2E-63 2.7E-68 526.1 30.1 331 66-416 2-337 (596)
2 KOG0731 AAA+-type ATPase conta 100.0 4.6E-56 9.9E-61 476.1 29.4 321 93-416 163-499 (774)
3 COG1222 RPT1 ATP-dependent 26S 100.0 2.8E-55 6E-60 433.6 9.1 196 219-415 139-338 (406)
4 KOG0734 AAA+-type ATPase conta 100.0 2.6E-53 5.6E-58 434.3 20.6 192 221-416 294-488 (752)
5 CHL00176 ftsH cell division pr 100.0 1.8E-50 3.9E-55 434.8 33.3 321 91-416 47-370 (638)
6 KOG0727 26S proteasome regulat 100.0 1.4E-45 3.1E-50 350.7 16.4 263 142-414 75-341 (408)
7 PRK10733 hflB ATP-dependent me 100.0 5.4E-43 1.2E-47 378.8 34.1 335 61-416 2-339 (644)
8 KOG0733 Nuclear AAA ATPase (VC 100.0 2.4E-44 5.1E-49 373.2 18.0 190 225-418 505-699 (802)
9 KOG0730 AAA+-type ATPase [Post 100.0 4.9E-44 1.1E-48 374.7 17.1 190 223-416 426-619 (693)
10 KOG0726 26S proteasome regulat 100.0 1.9E-43 4.1E-48 341.4 8.1 258 148-415 111-372 (440)
11 KOG0729 26S proteasome regulat 100.0 6.2E-42 1.3E-46 327.8 14.3 205 210-415 156-364 (435)
12 KOG0728 26S proteasome regulat 100.0 1.7E-41 3.7E-46 322.5 15.4 192 223-415 139-334 (404)
13 TIGR01241 FtsH_fam ATP-depende 100.0 2.3E-40 5E-45 348.8 23.6 237 173-416 2-242 (495)
14 KOG0652 26S proteasome regulat 100.0 1.4E-40 3.1E-45 317.7 15.2 195 220-415 160-358 (424)
15 KOG0733 Nuclear AAA ATPase (VC 100.0 1.4E-40 3.1E-45 345.2 16.3 188 224-415 183-377 (802)
16 KOG0736 Peroxisome assembly fa 100.0 1.5E-39 3.2E-44 344.3 17.4 190 222-414 663-859 (953)
17 COG1223 Predicted ATPase (AAA+ 100.0 7.1E-37 1.5E-41 292.2 14.0 186 223-416 113-301 (368)
18 KOG0739 AAA+-type ATPase [Post 100.0 1.9E-36 4.2E-41 293.6 13.0 187 222-416 124-316 (439)
19 PTZ00454 26S protease regulato 100.0 1.5E-35 3.2E-40 304.4 20.1 194 221-415 135-332 (398)
20 KOG0651 26S proteasome regulat 100.0 2.1E-36 4.6E-41 294.6 11.0 191 223-414 124-318 (388)
21 KOG0735 AAA+-type ATPase [Post 100.0 1.5E-35 3.2E-40 311.7 17.9 188 224-415 660-851 (952)
22 KOG0738 AAA+-type ATPase [Post 100.0 7.1E-36 1.5E-40 297.8 14.1 187 223-416 204-399 (491)
23 PRK03992 proteasome-activating 100.0 1.4E-34 3.1E-39 296.6 20.0 195 221-416 121-319 (389)
24 COG0464 SpoVK ATPases of the A 100.0 8.7E-35 1.9E-39 306.0 17.2 188 224-415 235-426 (494)
25 PTZ00361 26 proteosome regulat 100.0 8.9E-36 1.9E-40 308.6 6.4 194 221-415 173-370 (438)
26 TIGR03689 pup_AAA proteasome A 100.0 8.9E-34 1.9E-38 297.8 17.3 195 220-417 171-383 (512)
27 TIGR01243 CDC48 AAA family ATP 100.0 1.4E-33 2.9E-38 310.0 19.0 189 225-416 447-639 (733)
28 TIGR01242 26Sp45 26S proteasom 100.0 4.6E-32 1E-36 275.3 19.2 196 220-416 111-310 (364)
29 CHL00195 ycf46 Ycf46; Provisio 100.0 3.4E-32 7.3E-37 285.5 17.9 185 225-416 222-409 (489)
30 PLN00020 ribulose bisphosphate 100.0 1.5E-31 3.3E-36 268.4 16.2 188 225-415 109-314 (413)
31 KOG0737 AAA+-type ATPase [Post 100.0 1.7E-31 3.6E-36 265.8 13.4 187 223-415 84-277 (386)
32 CHL00206 ycf2 Ycf2; Provisiona 100.0 3.9E-31 8.5E-36 301.2 15.3 146 256-411 1622-1816(2281)
33 KOG0732 AAA+-type ATPase conta 100.0 2E-29 4.3E-34 277.4 14.2 188 225-416 259-455 (1080)
34 KOG0741 AAA+-type ATPase [Post 100.0 3.8E-29 8.1E-34 257.0 10.5 193 221-415 209-417 (744)
35 KOG0730 AAA+-type ATPase [Post 100.0 1.9E-28 4.2E-33 257.7 15.9 184 226-416 180-368 (693)
36 TIGR01243 CDC48 AAA family ATP 100.0 2.5E-28 5.4E-33 268.5 17.5 188 225-416 172-363 (733)
37 KOG0740 AAA+-type ATPase [Post 99.9 6.4E-27 1.4E-31 239.4 13.2 185 224-415 146-336 (428)
38 PF00004 AAA: ATPase family as 99.9 1.7E-23 3.7E-28 179.4 13.5 130 267-401 1-132 (132)
39 KOG0743 AAA+-type ATPase [Post 99.9 2.7E-23 5.9E-28 212.0 13.5 179 227-414 197-385 (457)
40 CHL00181 cbbX CbbX; Provisiona 99.8 2.8E-20 6E-25 184.0 14.8 174 230-415 22-212 (287)
41 TIGR02880 cbbX_cfxQ probable R 99.8 4.4E-20 9.6E-25 182.2 14.1 172 232-415 23-211 (284)
42 TIGR02881 spore_V_K stage V sp 99.8 7.9E-20 1.7E-24 177.7 15.1 174 229-415 4-194 (261)
43 KOG0744 AAA+-type ATPase [Post 99.8 2.6E-19 5.6E-24 176.2 10.3 182 230-414 141-342 (423)
44 KOG0742 AAA+-type ATPase [Post 99.8 2.1E-18 4.5E-23 174.0 12.5 177 226-414 350-530 (630)
45 TIGR00763 lon ATP-dependent pr 99.7 7.4E-17 1.6E-21 178.8 14.2 162 231-412 320-505 (775)
46 PF05496 RuvB_N: Holliday junc 99.7 5.7E-16 1.2E-20 147.3 13.8 156 224-410 17-190 (233)
47 TIGR02639 ClpA ATP-dependent C 99.7 3.4E-16 7.5E-21 172.6 13.1 163 226-413 177-359 (731)
48 PRK00080 ruvB Holliday junctio 99.6 1.7E-15 3.7E-20 152.0 13.8 162 224-414 18-195 (328)
49 TIGR00635 ruvB Holliday juncti 99.6 3.9E-15 8.5E-20 147.0 13.5 153 229-413 2-173 (305)
50 PRK11034 clpA ATP-dependent Cl 99.6 6.7E-15 1.5E-19 162.2 13.7 162 227-413 182-363 (758)
51 COG0464 SpoVK ATPases of the A 99.6 8.8E-15 1.9E-19 154.4 14.0 160 251-416 5-167 (494)
52 PHA02544 44 clamp loader, smal 99.6 1.4E-14 3E-19 143.8 13.6 159 219-410 9-171 (316)
53 COG0466 Lon ATP-dependent Lon 99.6 9.9E-15 2.2E-19 156.0 11.2 163 231-413 323-509 (782)
54 PRK10865 protein disaggregatio 99.6 1.7E-14 3.7E-19 161.5 13.6 162 226-413 173-355 (857)
55 KOG0735 AAA+-type ATPase [Post 99.6 2.3E-14 4.9E-19 152.7 13.5 173 231-415 408-589 (952)
56 COG2256 MGS1 ATPase related to 99.6 1.1E-14 2.3E-19 147.5 10.3 133 224-392 17-155 (436)
57 PRK04195 replication factor C 99.6 4.7E-14 1E-18 148.8 14.9 163 219-413 2-174 (482)
58 KOG2004 Mitochondrial ATP-depe 99.5 2.9E-14 6.3E-19 152.0 12.6 164 228-413 408-597 (906)
59 KOG0736 Peroxisome assembly fa 99.5 7.6E-14 1.6E-18 149.8 14.5 165 245-416 412-580 (953)
60 PRK07940 DNA polymerase III su 99.5 8.5E-14 1.9E-18 143.4 14.2 158 229-408 3-182 (394)
61 TIGR03345 VI_ClpV1 type VI sec 99.5 4.5E-14 9.7E-19 157.9 12.4 161 226-412 182-363 (852)
62 PRK14956 DNA polymerase III su 99.5 8.5E-14 1.8E-18 145.7 13.3 152 221-402 8-181 (484)
63 PRK14962 DNA polymerase III su 99.5 1.7E-13 3.7E-18 144.2 14.0 155 222-412 5-189 (472)
64 PRK13342 recombination factor 99.5 1.5E-13 3.3E-18 142.3 13.0 151 223-413 4-165 (413)
65 CHL00095 clpC Clp protease ATP 99.5 1.4E-13 3.1E-18 153.6 13.2 158 227-410 175-352 (821)
66 TIGR03346 chaperone_ClpB ATP-d 99.5 1.4E-13 3.1E-18 154.2 13.1 163 226-414 168-351 (852)
67 PRK10787 DNA-binding ATP-depen 99.5 1.4E-13 3.1E-18 152.6 12.9 162 231-413 322-507 (784)
68 PLN03025 replication factor C 99.5 2.2E-13 4.7E-18 136.3 13.1 154 221-412 3-171 (319)
69 PRK12323 DNA polymerase III su 99.5 9.2E-14 2E-18 149.3 10.9 151 221-402 6-183 (700)
70 PRK12402 replication factor C 99.5 4.9E-13 1.1E-17 133.1 15.3 165 219-414 3-199 (337)
71 COG2255 RuvB Holliday junction 99.5 1.5E-13 3.3E-18 133.9 11.1 155 226-412 21-194 (332)
72 TIGR00390 hslU ATP-dependent p 99.5 7.9E-14 1.7E-18 143.5 9.6 88 232-319 13-104 (441)
73 PRK05342 clpX ATP-dependent pr 99.5 2E-13 4.3E-18 141.4 12.2 130 233-363 73-213 (412)
74 cd00009 AAA The AAA+ (ATPases 99.5 8.4E-13 1.8E-17 112.5 13.4 121 265-398 20-149 (151)
75 PRK05201 hslU ATP-dependent pr 99.5 1.1E-13 2.5E-18 142.3 9.4 176 232-412 16-345 (443)
76 PRK00149 dnaA chromosomal repl 99.5 3.6E-13 7.8E-18 140.9 12.6 168 225-415 116-296 (450)
77 TIGR02640 gas_vesic_GvpN gas v 99.5 1.4E-12 2.9E-17 127.4 15.8 131 266-412 23-198 (262)
78 PRK11034 clpA ATP-dependent Cl 99.5 6.6E-13 1.4E-17 146.5 14.6 162 232-413 459-667 (758)
79 PRK07003 DNA polymerase III su 99.5 5.1E-13 1.1E-17 145.3 13.3 148 221-398 6-175 (830)
80 TIGR00362 DnaA chromosomal rep 99.4 6.3E-13 1.4E-17 137.1 13.2 166 225-415 104-284 (405)
81 PRK14961 DNA polymerase III su 99.4 8.5E-13 1.8E-17 134.6 13.4 161 222-412 7-191 (363)
82 TIGR02902 spore_lonB ATP-depen 99.4 1.3E-12 2.7E-17 139.6 14.0 166 220-414 54-278 (531)
83 PRK06893 DNA replication initi 99.4 1.9E-12 4.1E-17 123.9 13.4 159 223-414 8-176 (229)
84 PRK06645 DNA polymerase III su 99.4 1.8E-12 3.8E-17 137.5 14.2 164 220-413 10-201 (507)
85 TIGR02397 dnaX_nterm DNA polym 99.4 1.6E-12 3.6E-17 130.6 13.3 157 221-414 4-191 (355)
86 PRK14949 DNA polymerase III su 99.4 1.5E-12 3.3E-17 143.9 14.0 151 222-402 7-179 (944)
87 PRK07994 DNA polymerase III su 99.4 1.5E-12 3.2E-17 141.1 13.4 150 222-401 7-178 (647)
88 PRK14960 DNA polymerase III su 99.4 1.6E-12 3.5E-17 140.1 13.1 141 222-398 6-174 (702)
89 TIGR02639 ClpA ATP-dependent C 99.4 2.5E-12 5.4E-17 142.2 15.0 163 231-413 454-663 (731)
90 PRK14958 DNA polymerase III su 99.4 1.4E-12 3E-17 138.6 12.2 146 221-402 6-179 (509)
91 PRK14963 DNA polymerase III su 99.4 2.8E-12 6.1E-17 136.0 14.3 154 223-412 6-188 (504)
92 PRK14088 dnaA chromosomal repl 99.4 1.5E-12 3.2E-17 136.2 12.0 167 224-414 98-278 (440)
93 TIGR00382 clpX endopeptidase C 99.4 1.1E-12 2.5E-17 135.6 10.9 147 232-378 78-247 (413)
94 TIGR02928 orc1/cdc6 family rep 99.4 5.8E-12 1.3E-16 127.2 15.8 167 226-413 10-213 (365)
95 PRK14951 DNA polymerase III su 99.4 3.3E-12 7.2E-17 138.0 13.3 160 221-410 6-194 (618)
96 PRK14964 DNA polymerase III su 99.4 4.4E-12 9.5E-17 133.8 13.3 140 223-398 5-172 (491)
97 PRK05563 DNA polymerase III su 99.4 4.6E-12 1E-16 136.1 13.6 160 222-412 7-191 (559)
98 PRK14086 dnaA chromosomal repl 99.4 5.8E-12 1.3E-16 135.3 14.2 164 225-415 282-462 (617)
99 TIGR03420 DnaA_homol_Hda DnaA 99.4 6.1E-12 1.3E-16 118.5 12.8 153 225-414 9-174 (226)
100 PRK08903 DnaA regulatory inact 99.4 6.1E-12 1.3E-16 119.4 12.6 149 223-412 10-170 (227)
101 PF00308 Bac_DnaA: Bacterial d 99.3 8.4E-12 1.8E-16 118.9 12.8 164 225-415 2-182 (219)
102 PRK13341 recombination factor 99.3 5E-12 1.1E-16 139.0 12.8 156 221-413 18-182 (725)
103 PRK00411 cdc6 cell division co 99.3 2.5E-11 5.4E-16 124.0 16.6 166 227-413 26-221 (394)
104 KOG2028 ATPase related to the 99.3 2.4E-12 5.2E-17 129.1 8.7 150 224-410 131-292 (554)
105 TIGR01650 PD_CobS cobaltochela 99.3 2.7E-12 5.8E-17 128.8 9.0 133 265-412 65-233 (327)
106 PRK14970 DNA polymerase III su 99.3 6.8E-12 1.5E-16 127.6 12.2 160 220-410 6-178 (367)
107 PRK14969 DNA polymerase III su 99.3 6.5E-12 1.4E-16 134.1 11.5 147 222-398 7-175 (527)
108 PRK08691 DNA polymerase III su 99.3 8.3E-12 1.8E-16 135.5 12.4 148 221-398 6-175 (709)
109 PRK07764 DNA polymerase III su 99.3 8E-12 1.7E-16 139.0 12.6 160 222-412 6-192 (824)
110 PRK00440 rfc replication facto 99.3 2.3E-11 5E-16 120.1 14.5 159 219-414 5-176 (319)
111 PRK07133 DNA polymerase III su 99.3 1.1E-11 2.3E-16 135.4 13.3 160 220-409 7-187 (725)
112 smart00382 AAA ATPases associa 99.3 1.1E-11 2.5E-16 104.1 10.0 122 265-398 3-144 (148)
113 PRK14959 DNA polymerase III su 99.3 8.8E-12 1.9E-16 134.3 11.6 154 221-410 6-189 (624)
114 PRK05896 DNA polymerase III su 99.3 1.1E-11 2.3E-16 133.1 12.0 161 220-410 5-189 (605)
115 PRK14957 DNA polymerase III su 99.3 1.7E-11 3.8E-16 130.8 13.5 150 222-402 7-178 (546)
116 PRK12422 chromosomal replicati 99.3 1.7E-11 3.7E-16 128.4 13.2 168 225-415 105-287 (445)
117 COG0542 clpA ATP-binding subun 99.3 1.5E-11 3.3E-16 134.5 12.8 158 231-413 491-706 (786)
118 PHA02244 ATPase-like protein 99.3 4.3E-11 9.3E-16 121.8 15.1 146 228-402 94-261 (383)
119 PRK08084 DNA replication initi 99.3 4.3E-11 9.4E-16 115.0 14.4 154 224-414 15-182 (235)
120 KOG0989 Replication factor C, 99.3 8.4E-12 1.8E-16 122.9 9.4 150 219-402 24-189 (346)
121 PRK14965 DNA polymerase III su 99.3 1.4E-11 3.1E-16 132.7 11.9 147 222-398 7-175 (576)
122 PRK14953 DNA polymerase III su 99.3 2.5E-11 5.5E-16 128.3 13.2 163 221-413 6-192 (486)
123 PRK14952 DNA polymerase III su 99.3 2.1E-11 4.5E-16 131.3 12.6 146 223-398 5-174 (584)
124 PRK14948 DNA polymerase III su 99.3 3.4E-11 7.3E-16 130.7 14.2 147 222-398 7-177 (620)
125 PRK13407 bchI magnesium chelat 99.3 7E-12 1.5E-16 126.6 8.3 155 226-412 3-216 (334)
126 PRK08727 hypothetical protein; 99.3 4.1E-11 8.9E-16 115.1 13.1 153 224-414 12-177 (233)
127 PF05673 DUF815: Protein of un 99.3 7.2E-11 1.6E-15 113.9 14.1 160 223-413 19-208 (249)
128 PRK09111 DNA polymerase III su 99.3 4.1E-11 9E-16 129.4 13.8 152 220-402 13-191 (598)
129 COG0714 MoxR-like ATPases [Gen 99.3 3.9E-11 8.5E-16 120.6 12.7 116 266-402 45-189 (329)
130 PF07728 AAA_5: AAA domain (dy 99.3 4.4E-12 9.5E-17 111.0 5.1 113 266-392 1-139 (139)
131 PRK06305 DNA polymerase III su 99.3 4.1E-11 8.9E-16 125.7 13.0 151 221-402 7-180 (451)
132 TIGR03345 VI_ClpV1 type VI sec 99.3 6.1E-11 1.3E-15 133.0 15.0 160 231-413 566-781 (852)
133 PRK14955 DNA polymerase III su 99.3 3E-11 6.5E-16 124.7 11.3 148 221-398 6-183 (397)
134 PRK05642 DNA replication initi 99.2 7.9E-11 1.7E-15 113.2 13.3 160 223-414 11-181 (234)
135 PRK06647 DNA polymerase III su 99.2 5.9E-11 1.3E-15 127.5 13.2 161 222-412 7-191 (563)
136 PRK08451 DNA polymerase III su 99.2 1E-10 2.2E-15 124.6 14.1 152 221-402 4-177 (535)
137 CHL00095 clpC Clp protease ATP 99.2 1.2E-10 2.7E-15 130.3 15.1 163 231-413 509-733 (821)
138 PRK10865 protein disaggregatio 99.2 1.9E-10 4.1E-15 129.2 15.2 163 230-413 567-780 (857)
139 TIGR03346 chaperone_ClpB ATP-d 99.2 1.4E-10 3.1E-15 130.3 14.2 163 231-413 565-777 (852)
140 PTZ00112 origin recognition co 99.2 1.6E-10 3.4E-15 127.1 13.7 161 230-414 754-951 (1164)
141 PRK14087 dnaA chromosomal repl 99.2 1.3E-10 2.9E-15 121.9 12.5 164 227-414 111-290 (450)
142 TIGR02903 spore_lon_C ATP-depe 99.2 2.5E-10 5.4E-15 124.0 14.9 164 225-414 148-368 (615)
143 PRK11331 5-methylcytosine-spec 99.2 1.5E-10 3.2E-15 120.5 12.3 152 230-398 174-355 (459)
144 COG1219 ClpX ATP-dependent pro 99.2 4.5E-11 9.8E-16 118.3 7.9 130 233-364 63-203 (408)
145 PRK14950 DNA polymerase III su 99.2 1.8E-10 3.9E-15 124.5 13.3 147 222-398 7-176 (585)
146 CHL00081 chlI Mg-protoporyphyr 99.2 3.9E-11 8.5E-16 121.8 7.6 159 225-412 11-232 (350)
147 PRK14954 DNA polymerase III su 99.2 2.3E-10 4.9E-15 124.1 13.5 150 222-402 7-186 (620)
148 COG3829 RocR Transcriptional r 99.1 4.9E-11 1.1E-15 125.1 5.7 143 225-394 239-403 (560)
149 PF00158 Sigma54_activat: Sigm 99.1 2E-10 4.4E-15 105.3 9.0 136 233-395 1-157 (168)
150 PF07724 AAA_2: AAA domain (Cd 99.1 6.6E-11 1.4E-15 108.8 5.7 110 266-380 5-131 (171)
151 TIGR02442 Cob-chelat-sub cobal 99.1 1.7E-10 3.6E-15 125.9 9.6 150 229-410 2-212 (633)
152 PRK14971 DNA polymerase III su 99.1 8.5E-10 1.8E-14 119.8 13.6 148 221-398 7-177 (614)
153 smart00763 AAA_PrkA PrkA AAA d 99.1 8E-10 1.7E-14 112.3 12.4 83 230-319 49-144 (361)
154 TIGR02030 BchI-ChlI magnesium 99.1 4E-10 8.7E-15 114.1 10.2 151 229-411 2-218 (337)
155 PRK07471 DNA polymerase III su 99.1 1.7E-09 3.6E-14 110.8 14.7 155 226-410 14-211 (365)
156 PRK06620 hypothetical protein; 99.1 5.9E-10 1.3E-14 106.0 10.0 144 223-414 8-162 (214)
157 COG2812 DnaX DNA polymerase II 99.1 3.5E-10 7.5E-15 119.6 8.9 139 223-388 8-168 (515)
158 COG1220 HslU ATP-dependent pro 99.1 5.4E-10 1.2E-14 111.5 9.5 69 233-301 17-87 (444)
159 COG0470 HolB ATPase involved i 99.1 1.8E-09 3.9E-14 106.5 13.3 139 232-402 2-168 (325)
160 TIGR00678 holB DNA polymerase 99.1 1.7E-09 3.7E-14 99.8 12.2 128 263-410 13-166 (188)
161 COG0593 DnaA ATPase involved i 99.1 1.4E-09 3.1E-14 112.0 12.8 169 223-414 79-259 (408)
162 PRK08181 transposase; Validate 99.1 2.1E-09 4.6E-14 105.7 13.4 126 227-379 79-209 (269)
163 PRK11608 pspF phage shock prot 99.0 1E-09 2.2E-14 110.6 11.1 149 229-404 4-182 (326)
164 PF01078 Mg_chelatase: Magnesi 99.0 2.8E-10 6E-15 107.5 6.5 118 229-377 1-157 (206)
165 KOG0741 AAA+-type ATPase [Post 99.0 1.1E-09 2.4E-14 114.3 11.4 132 265-402 539-673 (744)
166 PRK09112 DNA polymerase III su 99.0 3.5E-09 7.6E-14 107.9 14.4 154 226-409 18-210 (351)
167 PRK05564 DNA polymerase III su 99.0 1.6E-09 3.5E-14 108.2 11.2 139 229-402 2-152 (313)
168 PRK15424 propionate catabolism 99.0 8.7E-10 1.9E-14 117.8 9.3 128 228-379 216-373 (538)
169 PRK08116 hypothetical protein; 99.0 2.8E-09 6.1E-14 104.7 12.1 110 264-388 114-235 (268)
170 PRK12377 putative replication 99.0 4.7E-09 1E-13 102.1 13.2 109 265-388 102-220 (248)
171 PRK06526 transposase; Provisio 99.0 2.4E-09 5.2E-14 104.5 11.0 126 227-379 72-201 (254)
172 KOG1969 DNA replication checkp 99.0 5.3E-09 1.2E-13 112.6 14.3 166 217-402 257-468 (877)
173 TIGR02974 phageshock_pspF psp 99.0 1.6E-09 3.6E-14 109.3 9.9 146 233-404 1-175 (329)
174 COG1474 CDC6 Cdc6-related prot 99.0 4.5E-09 9.8E-14 107.6 12.9 162 228-412 14-203 (366)
175 KOG0991 Replication factor C, 99.0 1.1E-09 2.5E-14 104.6 7.8 135 220-388 16-162 (333)
176 TIGR01817 nifA Nif-specific re 99.0 1.4E-09 3.1E-14 116.2 9.5 99 225-336 190-303 (534)
177 TIGR02329 propionate_PrpR prop 99.0 1.7E-09 3.8E-14 115.4 9.7 129 227-379 208-358 (526)
178 COG3604 FhlA Transcriptional r 99.0 8.5E-10 1.8E-14 114.8 6.6 140 227-393 219-379 (550)
179 PRK07952 DNA replication prote 99.0 8.6E-09 1.9E-13 100.1 13.3 100 265-379 100-205 (244)
180 KOG0745 Putative ATP-dependent 99.0 2.3E-09 5E-14 109.8 9.4 98 266-363 228-331 (564)
181 PRK11388 DNA-binding transcrip 99.0 2.2E-09 4.7E-14 117.1 9.8 129 227-379 321-467 (638)
182 PRK09087 hypothetical protein; 98.9 2E-09 4.4E-14 103.1 8.1 150 222-415 12-169 (226)
183 PRK08058 DNA polymerase III su 98.9 8.5E-09 1.8E-13 104.0 12.8 138 229-402 3-169 (329)
184 PF07726 AAA_3: ATPase family 98.9 4.7E-10 1E-14 98.5 3.2 109 266-392 1-129 (131)
185 COG0542 clpA ATP-binding subun 98.9 5.9E-09 1.3E-13 114.5 12.3 160 225-409 164-343 (786)
186 PRK13531 regulatory ATPase Rav 98.9 5.8E-09 1.3E-13 109.6 11.7 129 266-411 41-193 (498)
187 COG2607 Predicted ATPase (AAA+ 98.9 2.4E-08 5.2E-13 96.0 14.8 160 223-413 52-240 (287)
188 COG1221 PspF Transcriptional r 98.9 2.7E-09 5.8E-14 109.8 8.8 151 226-402 73-250 (403)
189 PRK15429 formate hydrogenlyase 98.9 6.8E-09 1.5E-13 114.2 12.5 129 227-379 372-521 (686)
190 PF14532 Sigma54_activ_2: Sigm 98.9 3.7E-09 8.1E-14 93.1 8.4 125 234-399 1-136 (138)
191 PRK05022 anaerobic nitric oxid 98.9 2.7E-09 6E-14 113.5 8.8 127 229-379 185-332 (509)
192 smart00350 MCM minichromosome 98.9 5.3E-09 1.1E-13 111.4 9.9 160 232-410 204-398 (509)
193 TIGR00368 Mg chelatase-related 98.9 4.2E-09 9.2E-14 111.8 9.1 145 227-401 188-391 (499)
194 PRK09183 transposase/IS protei 98.9 1.2E-08 2.7E-13 99.6 11.7 99 266-379 104-206 (259)
195 PRK10820 DNA-binding transcrip 98.9 9.2E-09 2E-13 109.9 11.7 130 225-379 198-349 (520)
196 PRK07399 DNA polymerase III su 98.9 1.8E-08 4E-13 101.2 13.0 142 229-402 2-182 (314)
197 COG2204 AtoC Response regulato 98.9 1.4E-09 3E-14 113.7 4.9 125 227-378 137-285 (464)
198 PRK05707 DNA polymerase III su 98.9 1E-08 2.2E-13 103.6 10.3 127 261-407 19-170 (328)
199 TIGR00602 rad24 checkpoint pro 98.9 2.1E-08 4.5E-13 109.0 13.3 113 217-336 70-208 (637)
200 PRK08939 primosomal protein Dn 98.9 1.6E-08 3.4E-13 101.3 11.1 101 264-379 156-261 (306)
201 TIGR02031 BchD-ChlD magnesium 98.8 1.7E-08 3.7E-13 109.3 10.9 127 265-412 17-174 (589)
202 PRK06835 DNA replication prote 98.8 4.6E-08 1E-12 98.9 13.0 111 265-392 184-305 (329)
203 PF13177 DNA_pol3_delta2: DNA 98.8 1.5E-08 3.4E-13 92.1 8.1 131 235-398 1-158 (162)
204 COG1484 DnaC DNA replication p 98.8 7.1E-08 1.5E-12 94.2 12.6 100 265-379 106-209 (254)
205 KOG1051 Chaperone HSP104 and r 98.8 6E-08 1.3E-12 108.0 12.8 128 232-378 563-710 (898)
206 PF01695 IstB_IS21: IstB-like 98.8 1.7E-08 3.6E-13 93.4 7.0 99 265-379 48-150 (178)
207 PRK06964 DNA polymerase III su 98.8 4.5E-08 9.7E-13 99.4 10.7 121 262-402 19-191 (342)
208 PTZ00111 DNA replication licen 98.7 6.4E-08 1.4E-12 107.9 10.7 121 263-402 491-644 (915)
209 PRK09862 putative ATP-dependen 98.7 6.9E-08 1.5E-12 102.5 10.4 141 228-402 188-388 (506)
210 PRK06921 hypothetical protein; 98.7 2.7E-07 5.9E-12 90.6 12.8 112 265-388 118-238 (266)
211 PRK08769 DNA polymerase III su 98.6 3.6E-07 7.7E-12 92.1 12.6 126 262-407 24-177 (319)
212 PF03969 AFG1_ATPase: AFG1-lik 98.6 1.5E-07 3.3E-12 96.3 10.0 108 261-384 59-174 (362)
213 COG1239 ChlI Mg-chelatase subu 98.6 3.1E-07 6.7E-12 94.5 11.9 156 227-412 13-232 (423)
214 PRK06871 DNA polymerase III su 98.6 3.1E-07 6.6E-12 92.8 11.7 121 262-402 22-166 (325)
215 PF06480 FtsH_ext: FtsH Extrac 98.6 5.5E-08 1.2E-12 80.9 4.5 97 64-164 1-109 (110)
216 PRK07993 DNA polymerase III su 98.6 3.5E-07 7.7E-12 92.7 11.1 121 262-402 22-167 (334)
217 TIGR02915 PEP_resp_reg putativ 98.6 1.6E-07 3.4E-12 97.7 8.6 127 229-379 137-284 (445)
218 COG0606 Predicted ATPase with 98.6 3.2E-08 6.9E-13 103.0 3.3 47 227-287 175-221 (490)
219 PRK04132 replication factor C 98.5 4.5E-07 9.9E-12 101.3 11.8 110 267-402 567-689 (846)
220 KOG0990 Replication factor C, 98.5 1.4E-07 3E-12 93.9 6.8 154 216-402 26-191 (360)
221 PRK10923 glnG nitrogen regulat 98.5 5.1E-07 1.1E-11 94.6 11.2 150 229-404 136-314 (469)
222 cd01120 RecA-like_NTPases RecA 98.5 4.8E-07 1E-11 79.2 9.2 110 267-380 2-138 (165)
223 PF13173 AAA_14: AAA domain 98.5 5.9E-07 1.3E-11 78.1 9.4 69 265-335 3-73 (128)
224 PRK06090 DNA polymerase III su 98.5 9.2E-07 2E-11 89.1 11.7 125 262-409 23-174 (319)
225 PF13401 AAA_22: AAA domain; P 98.5 3.9E-07 8.5E-12 78.1 7.7 96 265-377 5-124 (131)
226 PRK08699 DNA polymerase III su 98.5 7.9E-07 1.7E-11 89.8 10.7 126 262-407 19-177 (325)
227 PRK11361 acetoacetate metaboli 98.5 2.2E-07 4.7E-12 96.8 6.4 127 229-379 141-288 (457)
228 PF01637 Arch_ATPase: Archaeal 98.5 1.6E-06 3.5E-11 80.5 11.3 135 266-412 22-204 (234)
229 PRK15115 response regulator Gl 98.4 5.3E-07 1.2E-11 93.7 7.8 134 232-392 135-289 (444)
230 TIGR02237 recomb_radB DNA repa 98.4 9.5E-07 2E-11 82.6 7.9 111 264-377 12-148 (209)
231 PF06068 TIP49: TIP49 C-termin 98.4 7E-07 1.5E-11 90.9 6.8 68 228-302 21-90 (398)
232 PF05729 NACHT: NACHT domain 98.3 6.8E-06 1.5E-10 72.5 12.0 137 266-414 2-165 (166)
233 COG1485 Predicted ATPase [Gene 98.3 1.9E-06 4E-11 87.1 9.1 115 261-392 62-185 (367)
234 TIGR01818 ntrC nitrogen regula 98.3 1.4E-06 3E-11 90.9 8.4 126 230-379 133-279 (463)
235 COG1224 TIP49 DNA helicase TIP 98.3 6.5E-07 1.4E-11 90.3 5.5 69 228-303 36-106 (450)
236 PF12774 AAA_6: Hydrolytic ATP 98.3 7.3E-06 1.6E-10 79.1 12.3 125 266-412 34-177 (231)
237 TIGR03015 pepcterm_ATPase puta 98.3 8.9E-06 1.9E-10 78.6 12.3 24 266-289 45-68 (269)
238 PF03215 Rad17: Rad17 cell cyc 98.3 2.5E-06 5.4E-11 91.2 9.0 71 217-294 5-75 (519)
239 PF12775 AAA_7: P-loop contain 98.3 7.2E-07 1.6E-11 87.9 4.5 155 227-411 6-192 (272)
240 COG1116 TauB ABC-type nitrate/ 98.2 1.4E-06 3E-11 84.4 5.7 77 308-402 133-220 (248)
241 COG3283 TyrR Transcriptional r 98.2 1.3E-06 2.9E-11 88.2 5.0 129 225-379 198-344 (511)
242 cd01124 KaiC KaiC is a circadi 98.2 1.1E-05 2.3E-10 73.5 10.6 103 267-380 2-141 (187)
243 PRK10365 transcriptional regul 98.2 2.9E-06 6.3E-11 87.8 7.3 93 232-337 140-247 (441)
244 PLN03210 Resistant to P. syrin 98.2 2E-05 4.3E-10 91.8 14.0 152 226-412 179-364 (1153)
245 KOG2035 Replication factor C, 98.1 9E-06 2E-10 79.9 9.1 153 220-409 2-193 (351)
246 PRK11823 DNA repair protein Ra 98.1 1.2E-05 2.6E-10 84.7 10.2 75 264-338 80-171 (446)
247 KOG0478 DNA replication licens 98.1 1.3E-05 2.8E-10 86.5 9.6 154 232-404 430-616 (804)
248 PF00910 RNA_helicase: RNA hel 98.1 1.1E-05 2.5E-10 68.1 7.4 23 267-289 1-23 (107)
249 KOG1970 Checkpoint RAD17-RFC c 98.1 1.8E-05 4E-10 83.7 10.3 71 219-296 70-142 (634)
250 cd01121 Sms Sms (bacterial rad 98.1 1.8E-05 4E-10 81.4 10.0 74 265-338 83-173 (372)
251 PRK09361 radB DNA repair and r 98.1 1.5E-05 3.3E-10 75.5 8.6 115 261-377 20-160 (225)
252 PF05621 TniB: Bacterial TniB 98.0 4.1E-05 9E-10 76.3 11.6 146 232-394 35-207 (302)
253 PRK13765 ATP-dependent proteas 98.0 1.1E-05 2.3E-10 88.3 8.0 52 224-289 24-75 (637)
254 PRK05917 DNA polymerase III su 98.0 2.8E-05 6.1E-10 77.4 10.2 118 262-398 17-151 (290)
255 TIGR02858 spore_III_AA stage I 98.0 2.4E-05 5.1E-10 77.2 9.2 112 265-398 112-255 (270)
256 TIGR00764 lon_rel lon-related 98.0 1.4E-05 3E-10 87.2 8.0 86 226-325 13-108 (608)
257 PHA00729 NTP-binding motif con 98.0 1.4E-05 2.9E-10 76.9 7.0 24 266-289 19-42 (226)
258 KOG2383 Predicted ATPase [Gene 98.0 1.8E-05 4E-10 81.1 8.3 109 261-385 111-241 (467)
259 PF00493 MCM: MCM2/3/5 family 98.0 8.9E-07 1.9E-11 89.6 -1.8 145 232-402 25-208 (331)
260 PRK08533 flagellar accessory p 98.0 4.4E-05 9.5E-10 73.4 9.9 106 264-379 24-163 (230)
261 TIGR01618 phage_P_loop phage n 98.0 1.7E-05 3.7E-10 76.0 6.9 72 264-337 12-95 (220)
262 COG3284 AcoR Transcriptional a 97.9 2.8E-06 6E-11 91.1 1.5 112 266-394 338-469 (606)
263 cd03216 ABC_Carb_Monos_I This 97.9 2.3E-05 4.9E-10 71.0 7.0 103 266-382 28-145 (163)
264 COG1241 MCM2 Predicted ATPase 97.9 2.2E-05 4.8E-10 85.9 7.6 130 265-414 320-489 (682)
265 TIGR02012 tigrfam_recA protein 97.9 4.6E-05 1E-09 76.9 9.3 116 262-377 53-190 (321)
266 cd01394 radB RadB. The archaea 97.9 6.7E-05 1.5E-09 70.6 9.9 112 265-378 20-157 (218)
267 KOG1942 DNA helicase, TBP-inte 97.9 2.1E-05 4.6E-10 77.9 6.6 67 230-303 37-105 (456)
268 cd03283 ABC_MutS-like MutS-lik 97.9 4.7E-05 1E-09 71.6 8.8 105 265-382 26-151 (199)
269 PRK00131 aroK shikimate kinase 97.9 4E-05 8.7E-10 68.6 7.7 38 264-303 4-41 (175)
270 PRK13406 bchD magnesium chelat 97.9 1.8E-05 4E-10 85.7 6.3 118 265-402 26-169 (584)
271 PRK07132 DNA polymerase III su 97.9 0.00026 5.7E-09 70.9 13.9 118 264-408 18-155 (299)
272 COG1618 Predicted nucleotide k 97.8 8.4E-05 1.8E-09 67.9 8.9 24 265-288 6-29 (179)
273 PRK06067 flagellar accessory p 97.8 6.2E-05 1.3E-09 71.9 8.5 40 260-299 21-63 (234)
274 COG1121 ZnuC ABC-type Mn/Zn tr 97.8 5.2E-05 1.1E-09 74.1 7.8 60 308-381 142-201 (254)
275 PF00931 NB-ARC: NB-ARC domain 97.8 0.00015 3.3E-09 70.5 11.0 127 265-413 20-171 (287)
276 PRK08118 topology modulation p 97.8 3E-05 6.6E-10 70.9 5.7 33 266-298 3-35 (167)
277 TIGR00416 sms DNA repair prote 97.8 0.00011 2.4E-09 77.6 10.6 73 265-337 95-184 (454)
278 KOG0480 DNA replication licens 97.8 3.8E-05 8.3E-10 82.4 7.0 162 230-412 344-546 (764)
279 PRK05818 DNA polymerase III su 97.8 7.8E-05 1.7E-09 73.1 8.6 117 263-398 6-144 (261)
280 cd03238 ABC_UvrA The excision 97.8 0.00016 3.6E-09 66.8 10.2 112 266-398 23-161 (176)
281 PF13671 AAA_33: AAA domain; P 97.8 7.3E-05 1.6E-09 65.0 7.3 38 267-306 2-39 (143)
282 PF13207 AAA_17: AAA domain; P 97.8 1.5E-05 3.1E-10 67.7 2.7 30 267-296 2-31 (121)
283 PRK15455 PrkA family serine pr 97.8 2.7E-05 5.8E-10 83.7 5.1 63 229-297 74-137 (644)
284 cd01131 PilT Pilus retraction 97.8 0.00012 2.7E-09 68.5 9.0 66 267-332 4-83 (198)
285 PRK14722 flhF flagellar biosyn 97.8 7.6E-05 1.7E-09 76.8 8.1 109 264-387 137-267 (374)
286 COG4619 ABC-type uncharacteriz 97.7 0.00041 9E-09 64.2 11.8 59 321-398 149-207 (223)
287 PF00437 T2SE: Type II/IV secr 97.7 3.1E-05 6.7E-10 75.5 4.6 100 224-334 97-208 (270)
288 PRK07276 DNA polymerase III su 97.7 0.00024 5.2E-09 70.8 10.9 116 262-398 22-160 (290)
289 cd03228 ABCC_MRP_Like The MRP 97.7 0.00012 2.7E-09 66.5 8.1 102 266-382 30-158 (171)
290 COG4178 ABC-type uncharacteriz 97.7 8.5E-05 1.9E-09 80.2 8.1 56 310-380 520-575 (604)
291 KOG2227 Pre-initiation complex 97.7 0.00023 5E-09 74.4 10.8 164 230-414 149-340 (529)
292 PRK07261 topology modulation p 97.7 4.8E-05 1E-09 69.7 5.2 31 267-297 3-33 (171)
293 cd00983 recA RecA is a bacter 97.7 0.00015 3.3E-09 73.3 9.2 113 265-377 56-190 (325)
294 PRK09376 rho transcription ter 97.7 0.00014 3.1E-09 75.2 9.1 110 267-376 172-317 (416)
295 COG2274 SunT ABC-type bacterio 97.7 0.00015 3.3E-09 80.3 10.0 69 308-398 612-680 (709)
296 cd01393 recA_like RecA is a b 97.7 9E-05 2E-09 69.9 6.8 117 260-377 15-167 (226)
297 KOG1514 Origin recognition com 97.7 0.00029 6.3E-09 76.6 11.3 162 232-414 397-591 (767)
298 cd01123 Rad51_DMC1_radA Rad51_ 97.7 0.00014 3.1E-09 68.9 8.1 116 261-377 16-168 (235)
299 PF05707 Zot: Zonular occluden 97.7 9.4E-05 2E-09 69.0 6.7 120 267-398 3-143 (193)
300 cd01130 VirB11-like_ATPase Typ 97.7 6.7E-05 1.5E-09 69.4 5.4 67 266-332 27-109 (186)
301 TIGR02688 conserved hypothetic 97.6 0.00022 4.8E-09 74.3 9.5 76 238-336 194-273 (449)
302 PRK12723 flagellar biosynthesi 97.6 0.00046 1E-08 71.5 11.8 125 263-402 173-323 (388)
303 TIGR01420 pilT_fam pilus retra 97.6 0.00028 6.1E-09 71.7 10.2 68 266-333 124-205 (343)
304 PRK06762 hypothetical protein; 97.6 0.00018 3.9E-09 64.8 7.7 41 264-304 2-42 (166)
305 PRK04296 thymidine kinase; Pro 97.6 0.0003 6.4E-09 65.6 9.4 69 267-335 5-90 (190)
306 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 0.00018 4E-09 63.9 7.6 97 266-381 28-129 (144)
307 cd00267 ABC_ATPase ABC (ATP-bi 97.6 0.00017 3.8E-09 64.4 7.3 104 266-383 27-144 (157)
308 COG1120 FepC ABC-type cobalami 97.6 0.00025 5.4E-09 69.5 8.8 64 308-387 141-204 (258)
309 cd01128 rho_factor Transcripti 97.6 0.00057 1.2E-08 66.7 11.3 112 266-377 18-165 (249)
310 cd03223 ABCD_peroxisomal_ALDP 97.6 0.00038 8.3E-09 63.2 9.3 98 266-380 29-149 (166)
311 COG1136 SalX ABC-type antimicr 97.6 0.00074 1.6E-08 65.0 11.6 69 310-398 147-215 (226)
312 cd03246 ABCC_Protease_Secretio 97.6 0.00027 5.9E-09 64.4 8.3 102 266-381 30-158 (173)
313 TIGR03877 thermo_KaiC_1 KaiC d 97.6 0.00056 1.2E-08 65.7 10.8 40 260-299 17-59 (237)
314 cd03281 ABC_MSH5_euk MutS5 hom 97.6 0.00046 9.9E-09 65.6 10.0 112 265-386 30-161 (213)
315 cd03222 ABC_RNaseL_inhibitor T 97.6 0.00023 5E-09 65.9 7.8 103 266-381 27-134 (177)
316 PRK13695 putative NTPase; Prov 97.6 0.00044 9.6E-09 63.0 9.6 22 267-288 3-24 (174)
317 KOG2170 ATPase of the AAA+ sup 97.6 0.00042 9.1E-09 69.0 9.8 96 232-336 83-191 (344)
318 cd03247 ABCC_cytochrome_bd The 97.6 0.00038 8.3E-09 63.7 9.0 102 266-382 30-160 (178)
319 PF06745 KaiC: KaiC; InterPro 97.6 0.00027 5.9E-09 67.0 8.3 108 260-377 15-159 (226)
320 cd01122 GP4d_helicase GP4d_hel 97.6 0.00024 5.3E-09 69.0 8.1 39 260-298 26-68 (271)
321 cd00046 DEXDc DEAD-like helica 97.5 0.00054 1.2E-08 57.3 9.1 23 266-288 2-24 (144)
322 cd03229 ABC_Class3 This class 97.5 0.00021 4.5E-09 65.5 7.0 104 266-382 28-164 (178)
323 cd00464 SK Shikimate kinase (S 97.5 0.00016 3.4E-09 63.7 5.7 37 266-304 1-37 (154)
324 COG2884 FtsE Predicted ATPase 97.5 0.00041 8.9E-09 65.2 8.5 60 310-383 142-201 (223)
325 cd03215 ABC_Carb_Monos_II This 97.5 0.00041 8.9E-09 63.8 8.5 102 266-381 28-166 (182)
326 PRK14974 cell division protein 97.5 0.001 2.3E-08 67.6 12.0 72 264-335 140-234 (336)
327 KOG0482 DNA replication licens 97.5 8.1E-05 1.8E-09 78.2 3.9 169 232-417 343-548 (721)
328 PF13604 AAA_30: AAA domain; P 97.5 0.00019 4.2E-09 67.2 6.1 96 266-377 20-131 (196)
329 cd01129 PulE-GspE PulE/GspE Th 97.5 0.00079 1.7E-08 66.2 10.6 94 228-334 57-160 (264)
330 TIGR02782 TrbB_P P-type conjug 97.5 0.00016 3.4E-09 72.4 5.7 67 265-333 133-214 (299)
331 PRK13947 shikimate kinase; Pro 97.5 9.5E-05 2E-09 66.7 3.7 31 266-296 3-33 (171)
332 PRK09354 recA recombinase A; P 97.5 0.00046 9.9E-09 70.5 8.9 112 265-376 61-194 (349)
333 TIGR01359 UMP_CMP_kin_fam UMP- 97.5 0.0003 6.5E-09 64.2 6.9 33 267-301 2-34 (183)
334 TIGR03880 KaiC_arch_3 KaiC dom 97.5 0.00088 1.9E-08 63.4 10.3 109 260-377 12-152 (224)
335 PRK13948 shikimate kinase; Pro 97.5 0.00038 8.1E-09 64.8 7.6 41 263-305 9-49 (182)
336 PF06309 Torsin: Torsin; Inte 97.5 0.00037 8E-09 61.3 7.0 52 231-288 25-77 (127)
337 PF13191 AAA_16: AAA ATPase do 97.4 5.1E-05 1.1E-09 68.5 1.6 59 233-300 2-63 (185)
338 cd03230 ABC_DR_subfamily_A Thi 97.4 0.00069 1.5E-08 61.7 9.1 102 266-381 28-157 (173)
339 cd00984 DnaB_C DnaB helicase C 97.4 0.00055 1.2E-08 65.2 8.6 39 260-298 9-51 (242)
340 cd03214 ABC_Iron-Siderophores_ 97.4 0.00051 1.1E-08 63.0 8.0 104 266-382 27-161 (180)
341 COG1373 Predicted ATPase (AAA+ 97.4 0.00085 1.9E-08 69.7 10.6 117 266-402 39-155 (398)
342 PRK13946 shikimate kinase; Pro 97.4 0.00043 9.4E-09 63.9 7.5 33 264-296 10-42 (184)
343 COG3842 PotA ABC-type spermidi 97.4 0.0002 4.4E-09 73.0 5.7 27 260-286 25-53 (352)
344 KOG2228 Origin recognition com 97.4 0.0012 2.6E-08 66.8 11.0 157 232-412 25-219 (408)
345 TIGR03881 KaiC_arch_4 KaiC dom 97.4 0.0013 2.8E-08 62.4 10.9 38 260-297 16-56 (229)
346 PRK03839 putative kinase; Prov 97.4 0.00011 2.4E-09 67.1 3.4 30 267-296 3-32 (180)
347 cd03243 ABC_MutS_homologs The 97.4 0.0004 8.7E-09 64.9 7.2 21 266-286 31-51 (202)
348 PRK11174 cysteine/glutathione 97.4 0.00073 1.6E-08 73.1 10.2 67 310-398 490-556 (588)
349 PRK13900 type IV secretion sys 97.4 0.00032 7E-09 71.2 7.0 67 265-333 161-245 (332)
350 TIGR02868 CydC thiol reductant 97.4 0.00055 1.2E-08 73.0 9.1 32 257-288 352-385 (529)
351 TIGR02788 VirB11 P-type DNA tr 97.4 0.00029 6.2E-09 70.6 6.5 67 265-333 145-228 (308)
352 KOG1051 Chaperone HSP104 and r 97.4 0.0013 2.7E-08 74.1 11.9 148 230-402 185-350 (898)
353 PRK10536 hypothetical protein; 97.4 0.00057 1.2E-08 67.1 8.1 46 228-287 52-97 (262)
354 COG1131 CcmA ABC-type multidru 97.4 0.0007 1.5E-08 67.5 8.9 56 315-383 146-201 (293)
355 PRK11176 lipid transporter ATP 97.4 0.00083 1.8E-08 72.4 10.2 66 311-398 486-551 (582)
356 COG1127 Ttg2A ABC-type transpo 97.4 0.00081 1.8E-08 65.2 8.9 57 311-380 151-207 (263)
357 PRK05800 cobU adenosylcobinami 97.4 0.00063 1.4E-08 62.6 7.9 105 266-377 3-124 (170)
358 PRK13833 conjugal transfer pro 97.4 0.00026 5.7E-09 71.6 5.8 69 265-333 145-225 (323)
359 cd00544 CobU Adenosylcobinamid 97.4 0.00082 1.8E-08 61.8 8.5 106 267-378 2-125 (169)
360 cd03213 ABCG_EPDR ABCG transpo 97.4 0.0013 2.9E-08 61.1 10.0 101 266-380 37-172 (194)
361 PRK12724 flagellar biosynthesi 97.4 0.0021 4.5E-08 67.3 12.4 115 264-387 223-354 (432)
362 COG4618 ArpD ABC-type protease 97.4 0.00063 1.4E-08 71.9 8.6 83 310-414 477-565 (580)
363 COG0703 AroK Shikimate kinase 97.4 0.0004 8.7E-09 64.1 6.4 32 265-296 3-34 (172)
364 COG3854 SpoIIIAA ncharacterize 97.4 0.0012 2.5E-08 63.9 9.6 91 266-377 139-251 (308)
365 TIGR03796 NHPM_micro_ABC1 NHPM 97.3 0.00058 1.3E-08 75.6 8.8 32 257-288 496-529 (710)
366 TIGR03574 selen_PSTK L-seryl-t 97.3 0.0011 2.3E-08 64.1 9.5 36 267-302 2-40 (249)
367 cd03280 ABC_MutS2 MutS2 homolo 97.3 0.00091 2E-08 62.5 8.7 20 266-285 30-49 (200)
368 PF03266 NTPase_1: NTPase; In 97.3 8.4E-05 1.8E-09 68.3 1.7 22 267-288 2-23 (168)
369 TIGR02857 CydD thiol reductant 97.3 0.0011 2.3E-08 70.9 10.2 32 257-288 339-372 (529)
370 PRK13949 shikimate kinase; Pro 97.3 0.00033 7.1E-09 64.2 5.4 31 266-296 3-33 (169)
371 smart00534 MUTSac ATPase domai 97.3 0.0011 2.5E-08 61.2 9.0 19 267-285 2-20 (185)
372 PRK00625 shikimate kinase; Pro 97.3 0.00016 3.6E-09 66.7 3.4 31 266-296 2-32 (173)
373 PF00448 SRP54: SRP54-type pro 97.3 0.00022 4.8E-09 67.1 4.3 126 264-402 1-151 (196)
374 cd03232 ABC_PDR_domain2 The pl 97.3 0.0017 3.7E-08 60.2 10.2 101 266-380 35-169 (192)
375 cd00227 CPT Chloramphenicol (C 97.3 0.0002 4.4E-09 65.4 3.9 38 266-303 4-41 (175)
376 PRK04301 radA DNA repair and r 97.3 0.00069 1.5E-08 68.0 8.1 117 260-377 98-251 (317)
377 PRK13541 cytochrome c biogenes 97.3 0.0023 5E-08 59.4 10.9 23 266-288 28-50 (195)
378 PRK09519 recA DNA recombinatio 97.3 0.00089 1.9E-08 74.7 9.5 114 264-377 60-195 (790)
379 PRK14527 adenylate kinase; Pro 97.3 0.0011 2.4E-08 61.4 8.7 32 264-295 6-37 (191)
380 PRK13894 conjugal transfer ATP 97.3 0.00032 7E-09 70.8 5.5 69 265-333 149-229 (319)
381 PRK11889 flhF flagellar biosyn 97.3 0.0021 4.6E-08 66.8 11.5 71 264-334 241-331 (436)
382 TIGR02238 recomb_DMC1 meiotic 97.3 0.00065 1.4E-08 68.5 7.7 112 264-376 96-243 (313)
383 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.3 0.00087 1.9E-08 63.0 8.0 48 321-381 156-203 (218)
384 cd03217 ABC_FeS_Assembly ABC-t 97.3 0.00085 1.8E-08 62.6 7.8 102 266-381 28-166 (200)
385 COG1126 GlnQ ABC-type polar am 97.3 0.00072 1.6E-08 64.7 7.2 57 308-378 139-195 (240)
386 cd03218 ABC_YhbG The ABC trans 97.3 0.00078 1.7E-08 63.9 7.6 49 319-381 147-195 (232)
387 KOG3347 Predicted nucleotide k 97.3 0.00054 1.2E-08 62.0 6.0 34 266-301 9-42 (176)
388 TIGR03878 thermo_KaiC_2 KaiC d 97.3 0.0018 3.8E-08 63.4 10.2 39 260-298 32-73 (259)
389 KOG0481 DNA replication licens 97.3 0.00032 7E-09 74.0 5.1 155 233-398 333-511 (729)
390 PRK00771 signal recognition pa 97.3 0.0014 3.1E-08 68.9 10.0 38 262-299 93-133 (437)
391 cd03227 ABC_Class2 ABC-type Cl 97.3 0.0011 2.3E-08 60.1 8.0 21 265-285 22-42 (162)
392 TIGR02236 recomb_radA DNA repa 97.3 0.0009 1.9E-08 66.8 8.2 116 261-377 92-245 (310)
393 TIGR03797 NHPM_micro_ABC2 NHPM 97.3 0.0012 2.6E-08 72.9 9.9 65 310-398 593-657 (686)
394 PRK14532 adenylate kinase; Pro 97.2 0.00023 5E-09 65.4 3.5 34 266-301 2-35 (188)
395 cd02020 CMPK Cytidine monophos 97.2 0.00026 5.6E-09 61.6 3.5 30 267-296 2-31 (147)
396 cd02027 APSK Adenosine 5'-phos 97.2 0.001 2.2E-08 59.5 7.4 36 267-302 2-40 (149)
397 TIGR02525 plasmid_TraJ plasmid 97.2 0.0013 2.8E-08 67.8 9.1 69 266-334 151-236 (372)
398 PRK10416 signal recognition pa 97.2 0.0036 7.7E-08 63.3 12.0 114 263-385 113-252 (318)
399 cd03269 ABC_putative_ATPase Th 97.2 0.0015 3.3E-08 61.1 8.8 49 319-381 142-190 (210)
400 PRK10790 putative multidrug tr 97.2 0.0015 3.2E-08 70.9 9.8 57 310-381 481-537 (592)
401 PRK13537 nodulation ABC transp 97.2 0.0014 3E-08 65.7 8.9 53 316-382 149-201 (306)
402 PRK06217 hypothetical protein; 97.2 0.00028 6E-09 65.0 3.6 31 266-296 3-33 (183)
403 PRK04328 hypothetical protein; 97.2 0.0027 5.9E-08 61.6 10.7 39 260-298 19-60 (249)
404 PRK13851 type IV secretion sys 97.2 0.00052 1.1E-08 70.1 5.9 71 264-334 162-247 (344)
405 cd03266 ABC_NatA_sodium_export 97.2 0.00066 1.4E-08 63.8 6.1 49 319-381 150-198 (218)
406 PTZ00035 Rad51 protein; Provis 97.2 0.0011 2.5E-08 67.4 8.2 115 261-376 115-265 (337)
407 TIGR03375 type_I_sec_LssB type 97.2 0.0013 2.9E-08 72.6 9.4 66 311-398 607-672 (694)
408 PRK13538 cytochrome c biogenes 97.2 0.0016 3.5E-08 60.8 8.6 52 319-384 143-194 (204)
409 PRK00279 adk adenylate kinase; 97.2 0.0017 3.6E-08 61.4 8.7 29 267-295 3-31 (215)
410 cd01125 repA Hexameric Replica 97.2 0.0014 3E-08 62.9 8.3 20 267-286 4-23 (239)
411 cd01428 ADK Adenylate kinase ( 97.2 0.0003 6.4E-09 64.5 3.5 29 267-295 2-30 (194)
412 PLN03187 meiotic recombination 97.2 0.0013 2.8E-08 67.1 8.4 111 265-376 127-273 (344)
413 PF04665 Pox_A32: Poxvirus A32 97.2 0.0064 1.4E-07 59.2 12.8 129 264-411 13-169 (241)
414 PRK05973 replicative DNA helic 97.2 0.0012 2.6E-08 64.0 7.8 34 265-298 65-101 (237)
415 TIGR02673 FtsE cell division A 97.2 0.0015 3.2E-08 61.3 8.1 23 266-288 30-52 (214)
416 COG5271 MDN1 AAA ATPase contai 97.2 0.0017 3.7E-08 76.1 9.7 121 263-398 1542-1687(4600)
417 KOG1968 Replication factor C, 97.2 0.0013 2.7E-08 74.4 8.8 167 218-402 307-489 (871)
418 PRK13764 ATPase; Provisional 97.2 0.0005 1.1E-08 74.8 5.4 69 265-334 258-335 (602)
419 cd03226 ABC_cobalt_CbiO_domain 97.2 0.0015 3.2E-08 61.0 7.9 49 319-381 140-188 (205)
420 TIGR01313 therm_gnt_kin carboh 97.2 0.00034 7.3E-09 62.8 3.5 32 267-300 1-32 (163)
421 KOG0058 Peptide exporter, ABC 97.2 0.0016 3.5E-08 71.2 9.2 43 308-360 607-649 (716)
422 PRK13543 cytochrome c biogenes 97.1 0.0016 3.5E-08 61.4 8.2 54 317-384 149-202 (214)
423 TIGR01846 type_I_sec_HlyB type 97.1 0.0016 3.5E-08 71.9 9.5 57 311-382 599-655 (694)
424 COG0563 Adk Adenylate kinase a 97.1 0.00066 1.4E-08 63.0 5.2 33 266-300 2-34 (178)
425 PRK08154 anaerobic benzoate ca 97.1 0.0014 3.1E-08 65.7 8.1 55 238-296 111-165 (309)
426 TIGR00960 3a0501s02 Type II (G 97.1 0.0021 4.4E-08 60.4 8.6 23 266-288 31-53 (216)
427 TIGR02655 circ_KaiC circadian 97.1 0.0024 5.1E-08 68.0 10.1 74 264-337 263-367 (484)
428 TIGR01188 drrA daunorubicin re 97.1 0.002 4.3E-08 64.2 8.9 51 317-381 136-186 (302)
429 TIGR02655 circ_KaiC circadian 97.1 0.0028 6.1E-08 67.4 10.6 112 260-380 17-168 (484)
430 PLN02200 adenylate kinase fami 97.1 0.00049 1.1E-08 66.4 4.5 41 260-302 39-79 (234)
431 cd03292 ABC_FtsE_transporter F 97.1 0.0018 3.9E-08 60.6 8.1 49 320-382 151-199 (214)
432 cd02021 GntK Gluconate kinase 97.1 0.00037 7.9E-09 61.6 3.3 33 267-301 2-34 (150)
433 PRK14531 adenylate kinase; Pro 97.1 0.0004 8.7E-09 64.0 3.6 30 266-295 4-33 (183)
434 cd03293 ABC_NrtD_SsuB_transpor 97.1 0.0009 2E-08 63.1 6.1 23 266-288 32-54 (220)
435 TIGR02239 recomb_RAD51 DNA rep 97.1 0.0011 2.4E-08 66.9 7.0 115 262-377 94-244 (316)
436 TIGR00064 ftsY signal recognit 97.1 0.0077 1.7E-07 59.5 12.8 73 262-334 70-165 (272)
437 PRK13657 cyclic beta-1,2-gluca 97.1 0.0025 5.3E-08 69.1 10.1 23 266-288 363-385 (588)
438 PRK09544 znuC high-affinity zi 97.1 0.0015 3.3E-08 63.4 7.7 55 315-382 130-184 (251)
439 PF13481 AAA_25: AAA domain; P 97.1 0.00087 1.9E-08 61.4 5.7 72 267-338 35-156 (193)
440 PHA02530 pseT polynucleotide k 97.1 0.0012 2.7E-08 65.0 7.2 38 265-303 3-40 (300)
441 smart00487 DEXDc DEAD-like hel 97.1 0.0034 7.3E-08 55.8 9.4 32 266-297 26-62 (201)
442 PRK14530 adenylate kinase; Pro 97.1 0.0004 8.7E-09 65.6 3.5 30 266-295 5-34 (215)
443 PRK06696 uridine kinase; Valid 97.1 0.00077 1.7E-08 64.1 5.4 38 264-301 22-62 (223)
444 cd03233 ABC_PDR_domain1 The pl 97.1 0.0016 3.4E-08 61.0 7.4 23 266-288 35-57 (202)
445 PTZ00088 adenylate kinase 1; P 97.1 0.0005 1.1E-08 66.3 4.1 32 264-295 6-37 (229)
446 PRK03731 aroL shikimate kinase 97.1 0.00048 1E-08 62.2 3.8 31 266-296 4-34 (171)
447 PF13521 AAA_28: AAA domain; P 97.1 0.00085 1.8E-08 60.3 5.3 36 267-303 2-37 (163)
448 COG4133 CcmA ABC-type transpor 97.1 0.0031 6.7E-08 59.2 9.1 51 324-388 149-199 (209)
449 TIGR03410 urea_trans_UrtE urea 97.1 0.0015 3.3E-08 61.9 7.2 49 320-381 146-194 (230)
450 PRK13540 cytochrome c biogenes 97.1 0.0017 3.7E-08 60.5 7.4 52 319-384 141-192 (200)
451 COG2804 PulE Type II secretory 97.1 0.0013 2.9E-08 69.5 7.3 96 225-334 232-338 (500)
452 cd03259 ABC_Carb_Solutes_like 97.1 0.00097 2.1E-08 62.5 5.7 23 266-288 28-50 (213)
453 cd03231 ABC_CcmA_heme_exporter 97.1 0.0038 8.3E-08 58.2 9.7 55 316-384 136-190 (201)
454 PRK05541 adenylylsulfate kinas 97.1 0.0016 3.6E-08 59.2 7.0 40 264-303 7-49 (176)
455 COG2874 FlaH Predicted ATPases 97.1 0.0038 8.2E-08 59.7 9.5 126 251-388 13-176 (235)
456 cd03268 ABC_BcrA_bacitracin_re 97.0 0.0012 2.6E-08 61.6 6.3 23 266-288 28-50 (208)
457 TIGR01526 nadR_NMN_Atrans nico 97.0 0.0014 2.9E-08 66.4 7.0 69 266-335 164-243 (325)
458 COG1066 Sms Predicted ATP-depe 97.0 0.0042 9.2E-08 64.4 10.5 94 266-359 95-204 (456)
459 cd03115 SRP The signal recogni 97.0 0.0029 6.4E-08 57.3 8.5 32 267-298 3-37 (173)
460 PRK05057 aroK shikimate kinase 97.0 0.00054 1.2E-08 62.8 3.7 33 265-297 5-37 (172)
461 PRK10789 putative multidrug tr 97.0 0.0025 5.3E-08 69.0 9.4 31 258-288 333-365 (569)
462 TIGR01192 chvA glucan exporter 97.0 0.0026 5.7E-08 69.0 9.6 55 313-382 479-533 (585)
463 TIGR01166 cbiO cobalt transpor 97.0 0.0049 1.1E-07 56.7 10.1 23 266-288 20-42 (190)
464 PRK13536 nodulation factor exp 97.0 0.0024 5.2E-08 65.0 8.7 50 319-382 186-235 (340)
465 TIGR02204 MsbA_rel ABC transpo 97.0 0.003 6.5E-08 68.0 9.9 23 266-288 368-390 (576)
466 TIGR03499 FlhF flagellar biosy 97.0 0.0021 4.5E-08 63.7 7.9 37 264-300 194-235 (282)
467 TIGR02533 type_II_gspE general 97.0 0.0045 9.7E-08 66.0 11.0 95 226-334 217-322 (486)
468 COG3839 MalK ABC-type sugar tr 97.0 0.0015 3.3E-08 66.4 7.0 20 267-286 32-51 (338)
469 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00056 1.2E-08 62.3 3.6 33 266-300 5-37 (188)
470 cd03224 ABC_TM1139_LivF_branch 97.0 0.0018 3.8E-08 61.0 7.1 23 266-288 28-50 (222)
471 TIGR02203 MsbA_lipidA lipid A 97.0 0.0031 6.7E-08 67.8 9.8 23 266-288 360-382 (571)
472 cd03301 ABC_MalK_N The N-termi 97.0 0.001 2.2E-08 62.3 5.4 23 266-288 28-50 (213)
473 cd03225 ABC_cobalt_CbiO_domain 97.0 0.0029 6.2E-08 59.2 8.4 48 320-381 149-196 (211)
474 TIGR00958 3a01208 Conjugate Tr 97.0 0.0025 5.4E-08 70.8 9.2 23 266-288 509-531 (711)
475 TIGR03740 galliderm_ABC gallid 97.0 0.0034 7.5E-08 59.3 8.9 50 319-382 138-187 (223)
476 cd03265 ABC_DrrA DrrA is the A 97.0 0.0013 2.8E-08 62.0 6.0 23 266-288 28-50 (220)
477 cd03258 ABC_MetN_methionine_tr 97.0 0.0024 5.1E-08 60.7 7.8 23 266-288 33-55 (233)
478 TIGR02211 LolD_lipo_ex lipopro 97.0 0.0028 6.1E-08 59.7 8.2 23 266-288 33-55 (221)
479 cd03262 ABC_HisP_GlnQ_permease 97.0 0.0028 6.1E-08 59.2 8.2 49 320-382 150-198 (213)
480 PRK05703 flhF flagellar biosyn 97.0 0.0083 1.8E-07 62.9 12.5 37 264-300 221-262 (424)
481 PLN02674 adenylate kinase 97.0 0.0023 5E-08 62.4 7.7 36 264-301 31-66 (244)
482 cd03239 ABC_SMC_head The struc 97.0 0.0054 1.2E-07 56.7 9.9 111 266-398 24-170 (178)
483 KOG0477 DNA replication licens 97.0 0.00027 5.8E-09 75.9 1.4 151 232-398 450-629 (854)
484 TIGR00767 rho transcription te 97.0 0.0036 7.9E-08 65.1 9.6 23 267-289 171-193 (415)
485 PHA02774 E1; Provisional 97.0 0.0029 6.4E-08 68.3 9.1 33 265-297 435-468 (613)
486 TIGR01193 bacteriocin_ABC ABC- 97.0 0.0029 6.3E-08 70.1 9.5 66 310-398 616-681 (708)
487 PF06414 Zeta_toxin: Zeta toxi 97.0 0.0015 3.2E-08 61.1 6.1 67 262-328 13-98 (199)
488 TIGR01842 type_I_sec_PrtD type 97.0 0.0032 6.9E-08 67.6 9.5 23 266-288 346-368 (544)
489 PRK06547 hypothetical protein; 97.0 0.00063 1.4E-08 62.7 3.5 32 264-295 15-46 (172)
490 PRK11248 tauB taurine transpor 97.0 0.0023 5E-08 62.2 7.7 23 266-288 29-51 (255)
491 COG4608 AppF ABC-type oligopep 97.0 0.0017 3.6E-08 63.9 6.6 71 266-336 41-140 (268)
492 PRK13539 cytochrome c biogenes 97.0 0.0058 1.3E-07 57.3 10.1 52 319-384 141-192 (207)
493 cd03237 ABC_RNaseL_inhibitor_d 97.0 0.003 6.6E-08 61.2 8.4 23 266-288 27-49 (246)
494 COG1118 CysA ABC-type sulfate/ 97.0 0.0025 5.5E-08 63.8 7.8 21 266-286 30-50 (345)
495 TIGR01184 ntrCD nitrate transp 97.0 0.0017 3.7E-08 61.9 6.5 23 266-288 13-35 (230)
496 TIGR03608 L_ocin_972_ABC putat 97.0 0.0053 1.1E-07 57.1 9.6 23 266-288 26-48 (206)
497 PRK02496 adk adenylate kinase; 96.9 0.00063 1.4E-08 62.4 3.3 29 267-295 4-32 (184)
498 PF01745 IPT: Isopentenyl tran 96.9 0.00081 1.8E-08 64.2 4.1 95 267-376 4-99 (233)
499 TIGR01288 nodI ATP-binding ABC 96.9 0.0034 7.5E-08 62.5 8.8 49 319-381 149-197 (303)
500 COG1117 PstB ABC-type phosphat 96.9 0.0053 1.2E-07 58.8 9.5 51 313-377 157-207 (253)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-63 Score=526.10 Aligned_cols=331 Identities=53% Similarity=0.820 Sum_probs=281.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCcccccHHHHHHHHhcCCccEEEEeeCCeEEEEEecCcccCcceeEEEEEcC--
Q 014798 66 KKLVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLP-- 143 (418)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 143 (418)
+|++++++++.+++.+.. ..+.+++|++|+.++..++|++|.+..++.........+ ...++..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~ 68 (596)
T COG0465 2 LWLLIAIVLIFLFNLFTN-------SSSKQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDG------SKNTVYLPKG 68 (596)
T ss_pred chhHHHHHHHHHHHHhhh-------cccccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCC------cceEEeecCC
Confidence 466666666666666642 234679999999999999999999976553322222221 12223344
Q ss_pred CCcHHHHHHHHhcCcceeeccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccccc
Q 014798 144 GLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQME 223 (418)
Q Consensus 144 ~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 223 (418)
..+.++...+..+++.+....+... +.|..++.+|++.+++++.+++++++...++ +|.+ .|++|+++++...+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lp~il~~~~~~~~~~r~~~~g---~g~~-~~~~gkskak~~~~ 142 (596)
T COG0465 69 VNDPNLVSFLDSNNITESGFIPEDN--SLLASLLSTWLPFILLIGLGWFFFRRQAQGG---GGGG-AFSFGKSKAKLYLE 142 (596)
T ss_pred cccHHHHHHHHhcCCcccccCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCc-ccCCChHHHHHhcc
Confidence 3467899999999986655544333 5677777787777777776666555443321 2222 79999999999998
Q ss_pred CCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~ 303 (418)
....++|+||+|+|++|+++.|+|+++++|.+|.++|+++|+|++|+||||||||+||||+|+|+++||+++++|+|+++
T Consensus 143 ~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 143 DQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred cccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcc
Q 014798 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (418)
Q Consensus 304 ~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD 383 (418)
|+|++++++|++|++|++++||||||||||+++++|+.+.++++++++|++||||.+||||..+++|++|++|||||.||
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 384 SALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 384 ~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
+||+|||||||+|.+ ++| +|++|+++|++++|
T Consensus 303 ~ALlRpgRFDRqI~V-~~PDi~gRe~IlkvH~~~~~ 337 (596)
T COG0465 303 PALLRPGRFDRQILV-ELPDIKGREQILKVHAKNKP 337 (596)
T ss_pred HhhcCCCCcceeeec-CCcchhhHHHHHHHHhhcCC
Confidence 999999999999999 999 99999999999986
No 2
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-56 Score=476.13 Aligned_cols=321 Identities=57% Similarity=0.889 Sum_probs=250.6
Q ss_pred cccccHHHHH-HHHhcCCccEEEEeeCCeEEEEEecCcccCc--ceeEEEEEcCCCcHHHHHHHH----hcCcceee-cc
Q 014798 93 SSRMSYSRFL-EYLDKDRVKKVDLFENGTIAIVEAISPELGN--RVQRVRVQLPGLSQELLQKFR----EKNIDFAA-HN 164 (418)
Q Consensus 93 ~~~~~~~~f~-~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~----~~~v~~~~-~~ 164 (418)
..+++|.+|+ ++++.|.|.++.+...-....++........ -.+.+..++-. ...+.+++. +-+++... -+
T Consensus 163 ~~ei~~~df~~~~le~g~v~~~evv~~~~~~rv~~~~~~~~~~~~~~~~~~~i~~-v~~F~~kl~~a~~~l~~~~~~~~p 241 (774)
T KOG0731|consen 163 WQEITWRDFKQKLLEKGEVGKLEVVNPYAVVRVELDRGRIPGDRLIQKVWFNIRS-VDNFERKLDEAQRNLGIDTVVRVP 241 (774)
T ss_pred ceeeeHHHHHHHHhhccceeeEEeeccceeEEEEEeccccccccceeeEEEEecc-cchHHHHHHHHHHHhCCCceeEee
Confidence 4589999997 6899999999988642222222222111100 11222222221 233333333 22332211 11
Q ss_pred CCCcchhhHHHHHHHHHHH-HHHHHHHHHHHhhcCC-CCCCCCCCCCCcccccccc--cccccCCCCcccccccCchHHH
Q 014798 165 AQEDSGSLLFNLIGNLAFP-LILIGGLFLLSRRSSG-GMGGPGGPGFPLAFGQSKA--KFQMEPNTGVTFDDVAGVDEAK 240 (418)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~--~~~~~~~~~~~f~dV~G~de~k 240 (418)
... .....+......++| +++++.++++.|++.+ +.+++++..+++.|+.+++ ++..+.+++++|+||+|++++|
T Consensus 242 V~~-~~~~~~~~~~~~~~pti~~~~~l~~l~r~~~~~~~~~~gg~~g~~~f~~~ks~~k~~~~~~t~V~FkDVAG~deAK 320 (774)
T KOG0731|consen 242 VTY-ISESLLDLILGLLLPTILLLGGLLYLSRRSEGMGKGGPGGGLGPRLFGVSKSYKKFKNEGNTGVKFKDVAGVDEAK 320 (774)
T ss_pred eEE-eecchhhhhhhhhhHHHHHHHhHheeeeecccccccCCccccCcceeeeccceeeeccCCCCCCccccccCcHHHH
Confidence 111 112233333334455 7788888888887764 1233344445566665555 6777788889999999999999
Q ss_pred HHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhhcchhHHHHHHHHHH
Q 014798 241 QDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAK 320 (418)
Q Consensus 241 ~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg~~~~~vr~lF~~A~ 320 (418)
++|.|+|+||++|+.|.++|+++|+|+||+||||||||+||||+|+|+++||+++++++|+|+++|.+++++|++|..|+
T Consensus 321 ~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar 400 (774)
T KOG0731|consen 321 EELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLAR 400 (774)
T ss_pred HHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEEEcCCcccccccC-CCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEec
Q 014798 321 ENAPCIVFVDEIDAVGRQRG-TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHV 399 (418)
Q Consensus 321 ~~aP~IIfIDEIDal~~~r~-~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~ 399 (418)
.++||||||||||++++.|+ .+.+++++++++++||||.+||||....+|+|+++||++|.||+||+|||||||+|.+
T Consensus 401 ~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i- 479 (774)
T KOG0731|consen 401 KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQI- 479 (774)
T ss_pred ccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceec-
Confidence 99999999999999999994 4567889999999999999999999999999999999999999999999999999999
Q ss_pred Cch---HHHHHHHHhhccCC
Q 014798 400 SLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 400 ~lP---~R~~IL~~~l~~k~ 416 (418)
++| +|.+||++|+++++
T Consensus 480 ~~p~~~~r~~i~~~h~~~~~ 499 (774)
T KOG0731|consen 480 DLPDVKGRASILKVHLRKKK 499 (774)
T ss_pred cCCchhhhHHHHHHHhhccC
Confidence 999 99999999998875
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-55 Score=433.62 Aligned_cols=196 Identities=48% Similarity=0.799 Sum_probs=190.8
Q ss_pred cccccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeeh
Q 014798 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (418)
Q Consensus 219 ~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~ 297 (418)
.+.++..++++|+||+|+++++++++|.|+. |++|+.|.++|+.+|+|||||||||||||+||||+|++.++.|+.+.+
T Consensus 139 ~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvg 218 (406)
T COG1222 139 VMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVG 218 (406)
T ss_pred eeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEecc
Confidence 4556778999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 298 sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
|+++.+|+|+|+..||++|+.|+.++||||||||||+++.+|.+..++++.|.++|+.+||++||||....+|-||+|||
T Consensus 219 SElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATN 298 (406)
T COG1222 219 SELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATN 298 (406)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred CCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 378 RADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 378 ~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
|+|.|||||+|||||||.|+| |+| +|.+||++|+++.
T Consensus 299 R~D~LDPALLRPGR~DRkIEf-plPd~~gR~~Il~IHtrkM 338 (406)
T COG1222 299 RPDILDPALLRPGRFDRKIEF-PLPDEEGRAEILKIHTRKM 338 (406)
T ss_pred CccccChhhcCCCcccceeec-CCCCHHHHHHHHHHHhhhc
Confidence 999999999999999999999 899 9999999999874
No 4
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-53 Score=434.33 Aligned_cols=192 Identities=63% Similarity=0.951 Sum_probs=182.5
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef 300 (418)
..+...+++|+||.|+|++|+|++|+|+||++|++|..+|.+.|+||||+||||||||+||||+|+|+++|||+.++++|
T Consensus 294 ~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEF 373 (752)
T KOG0734|consen 294 DPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEF 373 (752)
T ss_pred ChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccch
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 301 ve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
-|+|||+|+++||++|+.|++++||||||||||+++.+|... ......|++||||.+||||..+++|+||+|||.||
T Consensus 374 dEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~---~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe 450 (752)
T KOG0734|consen 374 DEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS---DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPE 450 (752)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc---HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChh
Confidence 999999999999999999999999999999999999998652 12278899999999999999999999999999999
Q ss_pred CcchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 381 ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 381 ~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
.||+||.||||||++|.| +.| +|.+||+.|+++.+
T Consensus 451 ~LD~AL~RPGRFD~~v~V-p~PDv~GR~eIL~~yl~ki~ 488 (752)
T KOG0734|consen 451 ALDKALTRPGRFDRHVTV-PLPDVRGRTEILKLYLSKIP 488 (752)
T ss_pred hhhHHhcCCCccceeEec-CCCCcccHHHHHHHHHhcCC
Confidence 999999999999999999 999 99999999998865
No 5
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=1.8e-50 Score=434.81 Aligned_cols=321 Identities=71% Similarity=1.079 Sum_probs=274.0
Q ss_pred CCcccccHHHHHHHHhcCCccEEEEeeCCeEEEEEecCcccCcceeEEEEEcCCCcHHHHHHHHhcCcceeeccCCCcch
Q 014798 91 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSG 170 (418)
Q Consensus 91 ~~~~~~~~~~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~ 170 (418)
...++++||+|++++++|+|++|.+.+++....+....+..+.+++.+.+..|..++++++.|.++++++..++....
T Consensus 47 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-- 124 (638)
T CHL00176 47 KASSRMTYGRFLEYLDMGWIKKVDLYDNGRTAIVEASSPELGNRPQRIRVELPVGASELIQKLKEANIDFDAHPPVLK-- 124 (638)
T ss_pred CCCceecHHHHHHHHHcCCeeEEEEecCceEEEEeeccccCCCcceeEEEeCCCCCHHHHHHHHHcCCcEEecCCCcc--
Confidence 355679999999999999999999986654333332222222334556666775578999999999999988765443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccccccccccCCCCcccccccCchHHHHHHHHHHHHh
Q 014798 171 SLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFL 250 (418)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l 250 (418)
+.|...+.++++|+++++++++++.+.....+ +.++..++++++++++.......++|+||+|.+++++++.++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~l~eiv~~l 202 (638)
T CHL00176 125 SNIVTILSNLLLPLILIGVLWFFFQRSSNFKG--GPGQNLMNFGKSKARFQMEADTGITFRDIAGIEEAKEEFEEVVSFL 202 (638)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCcccccccchhHHHhhcccCCCCCHHhccChHHHHHHHHHHHHHH
Confidence 56777888888788877776665444322111 1122467899999888877788899999999999999999999999
Q ss_pred cCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEc
Q 014798 251 KKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVD 330 (418)
Q Consensus 251 ~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfID 330 (418)
++++.|..+|.+.|+|+||+||||||||++|+++|+++++||+++++++|.++++|.+..+++++|+.|+.++|||||||
T Consensus 203 k~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfID 282 (638)
T CHL00176 203 KKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFID 282 (638)
T ss_pred hCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHH
Q 014798 331 EIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWF 407 (418)
Q Consensus 331 EIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~I 407 (418)
|||++++.|+.+.++.+++.++++++||.+||++..+.+++||+|||+++.+|++++||||||+.+.+ ++| +|.+|
T Consensus 283 EID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v-~lPd~~~R~~I 361 (638)
T CHL00176 283 EIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITV-SLPDREGRLDI 361 (638)
T ss_pred cchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEE-CCCCHHHHHHH
Confidence 99999999887777788899999999999999999888999999999999999999999999999999 888 99999
Q ss_pred HHHhhccCC
Q 014798 408 LKTHSQYKD 416 (418)
Q Consensus 408 L~~~l~~k~ 416 (418)
|+.|+++++
T Consensus 362 L~~~l~~~~ 370 (638)
T CHL00176 362 LKVHARNKK 370 (638)
T ss_pred HHHHHhhcc
Confidence 999998754
No 6
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-45 Score=350.65 Aligned_cols=263 Identities=36% Similarity=0.594 Sum_probs=236.9
Q ss_pred cCCCcHHHHHHHHhcCcceeeccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCccccccccccc
Q 014798 142 LPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQ 221 (418)
Q Consensus 142 ~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 221 (418)
+|-.-.++++...++...+.+.... ++++.+++.+...++...+.+.++|+++.-.+ -.|...+.+...+.
T Consensus 75 vplvigqfle~vdqnt~ivgsttgs----ny~vrilstidrellkps~svalhrhsnalvd-----vlppeadssi~ml~ 145 (408)
T KOG0727|consen 75 VPLVIGQFLEAVDQNTAIVGSTTGS----NYYVRILSTIDRELLKPSASVALHRHSNALVD-----VLPPEADSSISMLG 145 (408)
T ss_pred cchHHHHHHHhhhccCceeecccCC----ceEEeehhhhhHHHcCCccchhhhhcccceee-----ccCCcccccccccC
Confidence 3433467888888777666665544 67999999999999999999999998876422 34566677777777
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef 300 (418)
...++++++.||+|+|-+|+++++.++. +.+.+.|.++|+.+|+|||||||||||||+||+|+|+.....|+.+.+++|
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsef 225 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 225 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH
Confidence 7888999999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 301 ve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
+.+|.|+|...+|++|..|+.++|+||||||||+++.+|.+..++.+.+.++.+-+||++||||....+|-||++||+.+
T Consensus 226 vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnrad 305 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD 305 (408)
T ss_pred HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhCCCccceEEEecCch---HHHHHHHHhhcc
Q 014798 381 ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 381 ~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~ 414 (418)
.|||||+||||+||+|++ ++| +++-+|...+++
T Consensus 306 tldpallrpgrldrkief-plpdrrqkrlvf~titsk 341 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEF-PLPDRRQKRLVFSTITSK 341 (408)
T ss_pred ccCHhhcCCccccccccC-CCCchhhhhhhHHhhhhc
Confidence 999999999999999999 899 556666665544
No 7
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=5.4e-43 Score=378.83 Aligned_cols=335 Identities=52% Similarity=0.809 Sum_probs=274.4
Q ss_pred chhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcccccHHHHHHHHhcCCccEEEEeeCCeEEEEEecCcccCcceeEEEE
Q 014798 61 RRGFLKKLVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRV 140 (418)
Q Consensus 61 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (418)
.++.+.|++++++++.++..+... ......++|+.|.+.+.++.+.++.+..+ ++ ..... + +. .+..
T Consensus 2 ~~~~L~~i~l~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~Ev~~~~~-tI-K~~~~--e-~~---~~~~ 68 (644)
T PRK10733 2 AKNLILWLVIAVVLMSVFQSFGPS-----ESNGRKVDYSTFLQEVNQDQVREARINGR-EI-NVTKK--D-SN---RYTT 68 (644)
T ss_pred chhHHHHHHHHHHHHHHHHHHhcC-----CCCcccCCHHHHHHHHHcCCeEEEEEeCC-EE-EEEEc--C-Cc---eEEE
Confidence 356777877776666555444321 12345799999999999999999987532 22 12211 1 12 2334
Q ss_pred EcCCCcHHHHHHHHhcCcceeeccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccccccc
Q 014798 141 QLPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKF 220 (418)
Q Consensus 141 ~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 220 (418)
..|..++.+...+.++++.+........ .++..++..+.+.++++++++++.+++++| ++...+.|++++..+
T Consensus 69 ~~~~~~~~l~~~l~~~~v~~~~~~~~~~--~~~~~i~~~~~~~il~ig~~~v~~g~mt~G-----~~~~l~af~~~~~~~ 141 (644)
T PRK10733 69 YIPVNDPKLLDNLLTKNVKVVGEPPEEP--SLLASIFISWFPMLLLIGVWIFFMRQMQGG-----GGKGAMSFGKSKARM 141 (644)
T ss_pred eCCCCCHHHHHHHHHcCCeEEecCcccc--hHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-----CCceeEEeccccccc
Confidence 4565567889999999999887654433 444444555555555666666677766543 123457888888888
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef 300 (418)
..+.....+|+|+.|.+.+++++.++++++..+..|..++...|+|++|+||||||||++|+++|+++++||+.++++++
T Consensus 142 ~~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~ 221 (644)
T PRK10733 142 LTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 221 (644)
T ss_pred cCchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHh
Confidence 77766788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 301 ve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
.+.+++.++..++++|..|+..+||||||||+|+++.+|+.+.++++++.++++++||.+||++..+++++||+|||+++
T Consensus 222 ~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~ 301 (644)
T PRK10733 222 VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD 301 (644)
T ss_pred HHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChh
Confidence 99999999999999999999999999999999999999988777788899999999999999999999999999999999
Q ss_pred CcchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 381 ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 381 ~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
.||++++||||||+++.+ ++| +|.+||+.|+++.|
T Consensus 302 ~lD~Al~RpgRfdr~i~v-~~Pd~~~R~~Il~~~~~~~~ 339 (644)
T PRK10733 302 VLDPALLRPGRFDRQVVV-GLPDVRGREQILKVHMRRVP 339 (644)
T ss_pred hcCHHHhCCcccceEEEc-CCCCHHHHHHHHHHHhhcCC
Confidence 999999999999999999 999 89999999998765
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-44 Score=373.22 Aligned_cols=190 Identities=45% Similarity=0.765 Sum_probs=180.3
Q ss_pred CCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 014798 225 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (418)
Q Consensus 225 ~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~ 303 (418)
-++++|+||+++++++.++...+.+ +++|+.|..+|+..|.|||||||||||||+||||+|+|++.+|+.|.+.++.++
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 3789999999999999999997777 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcc
Q 014798 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (418)
Q Consensus 304 ~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD 383 (418)
|||+.+..||.+|..|+..+|||||+||+|++.+.|+.+. .....+++||||+||||...+.+|.||+||||||.+|
T Consensus 585 YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID 661 (802)
T ss_pred HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccccceEEEeecCCCcccc
Confidence 9999999999999999999999999999999999998743 5567889999999999999999999999999999999
Q ss_pred hhhhCCCccceEEEecCch---HHHHHHHHhhcc-CCCC
Q 014798 384 SALLRPGRFDRQVKHVSLS---LMLWFLKTHSQY-KDPL 418 (418)
Q Consensus 384 ~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~-k~pl 418 (418)
||++||||||+.++| ++| +|.+||+.++++ +|||
T Consensus 662 pAiLRPGRlDk~LyV-~lPn~~eR~~ILK~~tkn~k~pl 699 (802)
T KOG0733|consen 662 PAILRPGRLDKLLYV-GLPNAEERVAILKTITKNTKPPL 699 (802)
T ss_pred hhhcCCCccCceeee-cCCCHHHHHHHHHHHhccCCCCC
Confidence 999999999999999 999 999999999996 3443
No 9
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-44 Score=374.74 Aligned_cols=190 Identities=47% Similarity=0.805 Sum_probs=182.1
Q ss_pred cCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 014798 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv 301 (418)
.+.++++|+||+|++++|+++++.|.+ +++|+.|.++|..+|+|||||||||||||++|||+|++++.+|++|.+.++.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 566899999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 302 e~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
++|+|++++.+|++|++|++.+|||||+||||+++.+|+... +....+++++||+||||+....+|+||||||||+.
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~---~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ 582 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS---SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDM 582 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc---cchHHHHHHHHHHHcccccccCcEEEEeccCChhh
Confidence 999999999999999999999999999999999999997422 26678899999999999999999999999999999
Q ss_pred cchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 382 LDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 382 LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
||+||+||||||+.|++ ++| .|.+||+.|+++.|
T Consensus 583 ID~ALlRPGRlD~iiyV-plPD~~aR~~Ilk~~~kkmp 619 (693)
T KOG0730|consen 583 IDPALLRPGRLDRIIYV-PLPDLEARLEILKQCAKKMP 619 (693)
T ss_pred cCHHHcCCcccceeEee-cCccHHHHHHHHHHHHhcCC
Confidence 99999999999999999 999 99999999999876
No 10
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-43 Score=341.39 Aligned_cols=258 Identities=34% Similarity=0.584 Sum_probs=221.8
Q ss_pred HHHHHHHhcCcceeeccCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccccccccccccCCCC
Q 014798 148 ELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTG 227 (418)
Q Consensus 148 ~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~ 227 (418)
.+.+.+.++.+.+...... .+|+++++.+..-++-.++.+++..+.....|-..+.-.|| -..+..++.+.
T Consensus 111 ~leEiidd~haivst~~g~----e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpm-----v~vmK~eKaP~ 181 (440)
T KOG0726|consen 111 TLEEIIDDNHAIVSTSVGS----EYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPM-----VSVMKVEKAPQ 181 (440)
T ss_pred cHHHHhcCCceEEecccCc----hheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCcc-----ceeeecccCch
Confidence 3444444454444433322 56888888888888888888877655443322111111232 22345677788
Q ss_pred cccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhh
Q 014798 228 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 306 (418)
Q Consensus 228 ~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg 306 (418)
-+|+|+.|++++.+++.+.++. |.+|+.|..+|+++|+||+|||+||||||+||+|+|+.....|+.+.+++++.+|.|
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylG 261 (440)
T KOG0726|consen 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG 261 (440)
T ss_pred hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhc
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhh
Q 014798 307 VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 386 (418)
Q Consensus 307 ~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~AL 386 (418)
.|++.+|++|+.|..++|+|+||||||+++.+|.+..+++..+.++++.+||+++|||..+.+|-||+|||+.+.|||||
T Consensus 262 dGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaL 341 (440)
T KOG0726|consen 262 DGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPAL 341 (440)
T ss_pred cchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhh
Confidence 99999999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred hCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 387 LRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 387 lRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
+||||+||.|++ ++| .|..||.+|.++.
T Consensus 342 iRPGrIDrKIef-~~pDe~TkkkIf~IHTs~M 372 (440)
T KOG0726|consen 342 IRPGRIDRKIEF-PLPDEKTKKKIFQIHTSRM 372 (440)
T ss_pred cCCCcccccccc-CCCchhhhceeEEEeeccc
Confidence 999999999999 999 8999999998753
No 11
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-42 Score=327.83 Aligned_cols=205 Identities=45% Similarity=0.736 Sum_probs=194.8
Q ss_pred CcccccccccccccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc
Q 014798 210 PLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 210 ~~~~~~s~~~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el 288 (418)
|...+.|-..++++..+++++.||.|+.++.+.++|+++. +-+|++|..+|+.+|+|||||||||||||++|||+|++.
T Consensus 156 ppkidpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 156 PPKIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred CCCCCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 3455556666788899999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCCeeeeehhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 014798 289 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (418)
Q Consensus 289 ~~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~ 368 (418)
+..|+.+-+|+++.+|+|+++..+|++|+.|+....||||+||||+++..|.+...+++.+.+++..+|+.++|||....
T Consensus 236 dacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprg 315 (435)
T KOG0729|consen 236 DACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 315 (435)
T ss_pred CceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999988777888999999999999999999999
Q ss_pred CeEEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 369 GIIVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 369 ~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
++-|+++||+|+.|||||+||||+||.+++ .+| +|..||++|.+..
T Consensus 316 nikvlmatnrpdtldpallrpgrldrkvef-~lpdlegrt~i~kihaksm 364 (435)
T KOG0729|consen 316 NIKVLMATNRPDTLDPALLRPGRLDRKVEF-GLPDLEGRTHIFKIHAKSM 364 (435)
T ss_pred CeEEEeecCCCCCcCHhhcCCcccccceec-cCCcccccceeEEEecccc
Confidence 999999999999999999999999999999 999 9999999998753
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-41 Score=322.46 Aligned_cols=192 Identities=47% Similarity=0.785 Sum_probs=185.0
Q ss_pred cCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 014798 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv 301 (418)
++-++-+++-|.|+|.+.+++.++++. .++|+.|..+|+..|+|+|||||||||||+||+|+|++..+.|+.+++++++
T Consensus 139 eKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselv 218 (404)
T KOG0728|consen 139 EKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELV 218 (404)
T ss_pred hhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHH
Confidence 445667889999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 302 e~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
.+|.|+|...+|++|-.|+.++|+|||+||||.++..|.++.++++.+.+++..+||+++|||+...++-||++|||.|.
T Consensus 219 qk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridi 298 (404)
T KOG0728|consen 219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 298 (404)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecccccc
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred cchhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 382 LDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 382 LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
|||||+||||+||.|++ |.| .|.+||++|.++.
T Consensus 299 ld~allrpgridrkief-p~p~e~ar~~ilkihsrkm 334 (404)
T KOG0728|consen 299 LDPALLRPGRIDRKIEF-PPPNEEARLDILKIHSRKM 334 (404)
T ss_pred ccHhhcCCCcccccccC-CCCCHHHHHHHHHHhhhhh
Confidence 99999999999999999 777 9999999998763
No 13
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.3e-40 Score=348.79 Aligned_cols=237 Identities=68% Similarity=1.100 Sum_probs=213.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhcCCCCCCCCCCCCCcccccccccccccCCCCcccccccCchHHHHHHHHHHHHhc
Q 014798 173 LFNLIGNLAFPLILIGGLFL-LSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLK 251 (418)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~ 251 (418)
|.+++.++.+|+++++..|+ +.+++.++ | +..+.++++++++..+..+.++|+||+|++++|+++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~ 75 (495)
T TIGR01241 2 LLGFLFSLLPPILLLVGVWFFFRRQMQGG----G--GRAFSFGKSKAKLLNEEKPKVTFKDVAGIDEAKEELMEIVDFLK 75 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC----C--CCCcCCCCCccccccCCCCCCCHHHhCCHHHHHHHHHHHHHHHH
Confidence 56677777776766665555 55555432 1 33467889999999888999999999999999999999999999
Q ss_pred CchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcC
Q 014798 252 KPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDE 331 (418)
Q Consensus 252 ~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDE 331 (418)
+++.|...|.+.|+|+||+||||||||++|+++|+++++||+.++++++.+.++|.+.+.++++|+.|+..+||||||||
T Consensus 76 ~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDE 155 (495)
T TIGR01241 76 NPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDE 155 (495)
T ss_pred CHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHH
Q 014798 332 IDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFL 408 (418)
Q Consensus 332 IDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL 408 (418)
||.++.+++.+.++.+++..+++++||.+||++..+.+++||+|||+++.||++++||||||+.|.+ ++| +|.+||
T Consensus 156 id~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i-~~Pd~~~R~~il 234 (495)
T TIGR01241 156 IDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVV-DLPDIKGREEIL 234 (495)
T ss_pred hhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEc-CCCCHHHHHHHH
Confidence 9999998887666677888899999999999999888999999999999999999999999999999 888 999999
Q ss_pred HHhhccCC
Q 014798 409 KTHSQYKD 416 (418)
Q Consensus 409 ~~~l~~k~ 416 (418)
+.|+++.+
T Consensus 235 ~~~l~~~~ 242 (495)
T TIGR01241 235 KVHAKNKK 242 (495)
T ss_pred HHHHhcCC
Confidence 99998764
No 14
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-40 Score=317.66 Aligned_cols=195 Identities=42% Similarity=0.745 Sum_probs=185.9
Q ss_pred ccccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehh
Q 014798 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (418)
Q Consensus 220 ~~~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~s 298 (418)
+.++..+.-+++||.|++.+.+++.+.+-. +.++++|..+|+++|+|+|+|||||||||++|||+|...+..|..+.+.
T Consensus 160 MevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgP 239 (424)
T KOG0652|consen 160 MEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGP 239 (424)
T ss_pred eeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcch
Confidence 344667788999999999999999986665 9999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014798 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (418)
Q Consensus 299 efve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~ 378 (418)
.++.||.|.|++.||+.|..|+..+|+||||||+|+++.+|.+....++.+.+++..+||.++|||.+++.|-||++|||
T Consensus 240 QLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNR 319 (424)
T KOG0652|consen 240 QLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNR 319 (424)
T ss_pred HHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccc
Confidence 99999999999999999999999999999999999999999988888899999999999999999999999999999999
Q ss_pred CCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 379 ADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 379 ~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
.+.|||||+|.||+||.|++ |.| .|..|+++|.++.
T Consensus 320 vDiLDPALlRSGRLDRKIEf-P~Pne~aRarIlQIHsRKM 358 (424)
T KOG0652|consen 320 VDILDPALLRSGRLDRKIEF-PHPNEEARARILQIHSRKM 358 (424)
T ss_pred ccccCHHHhhcccccccccC-CCCChHHHHHHHHHhhhhc
Confidence 99999999999999999999 888 9999999999874
No 15
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-40 Score=345.18 Aligned_cols=188 Identities=45% Similarity=0.748 Sum_probs=175.4
Q ss_pred CCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~ 303 (418)
+.++++|+|++|++....++.+++..+++|+.|..+|..+|+|||||||||||||+||+|+|+|+++||+.|++.++++.
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCC----CCeEEEEEeCCC
Q 014798 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN----TGIIVIAATNRA 379 (418)
Q Consensus 304 ~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~----~~ViVIatTN~~ 379 (418)
+.|+.++++|++|++|+..+|||+||||||+++++|..+ +-+-..+++.|||+.||+.... ..|+||+|||||
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a---qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA---QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH---HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 999999999999999999999999999999999999752 2333457899999999998664 569999999999
Q ss_pred CCcchhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 380 DILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 380 ~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
|.|||||+|+||||+.|.+ ..| .|++||++.+++.
T Consensus 340 DslDpaLRRaGRFdrEI~l-~vP~e~aR~~IL~~~~~~l 377 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICL-GVPSETAREEILRIICRGL 377 (802)
T ss_pred cccCHHHhccccccceeee-cCCchHHHHHHHHHHHhhC
Confidence 9999999999999999999 999 9999999998753
No 16
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-39 Score=344.29 Aligned_cols=190 Identities=42% Similarity=0.761 Sum_probs=172.9
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef 300 (418)
..+-|+++|+||+|.+++|.++++-+.. |++|+.|. .|.+...|||||||||||||++|||||.|+...|++|.+.++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 4567899999999999999999999998 99999876 477777899999999999999999999999999999999999
Q ss_pred HHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEEeCC
Q 014798 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--GNTGIIVIAATNR 378 (418)
Q Consensus 301 ve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~--~~~~ViVIatTN~ 378 (418)
.+||+|+.++.||++|++|+..+|||||+||+|.++++||.... +..-..+++.|||.||||.. ...+|.||+||||
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGD-SGGVMDRVVSQLLAELDgls~~~s~~VFViGATNR 820 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGD-SGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNR 820 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCC-ccccHHHHHHHHHHHhhcccCCCCCceEEEecCCC
Confidence 99999999999999999999999999999999999999986321 22235679999999999998 4678999999999
Q ss_pred CCCcchhhhCCCccceEEEecCch----HHHHHHHHhhcc
Q 014798 379 ADILDSALLRPGRFDRQVKHVSLS----LMLWFLKTHSQY 414 (418)
Q Consensus 379 ~~~LD~ALlRpGRFdr~I~v~~lP----~R~~IL~~~l~~ 414 (418)
||.|||||+||||||+.+++ ..+ .+..||+..+++
T Consensus 821 PDLLDpALLRPGRFDKLvyv-G~~~d~esk~~vL~AlTrk 859 (953)
T KOG0736|consen 821 PDLLDPALLRPGRFDKLVYV-GPNEDAESKLRVLEALTRK 859 (953)
T ss_pred ccccChhhcCCCccceeEEe-cCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999 888 888899887765
No 17
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=7.1e-37 Score=292.15 Aligned_cols=186 Identities=42% Similarity=0.714 Sum_probs=171.3
Q ss_pred cCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 014798 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve 302 (418)
+..++++|+||+|++++|+...-++++|.+|++|.++. |++||+|||||||||++|||+|+++++||+.+.+.+++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WA---PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWA---PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccC---cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 34578999999999999999999999999999988774 789999999999999999999999999999999999999
Q ss_pred HhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 303 ~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
.+||.++.+++++|+.|++.+|||+||||+|+++-.|....--+ .....+|.||++|||...+.+|+.||+||+|+.|
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRG--DVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRG--DVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcc--cHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 99999999999999999999999999999999998875432211 2345899999999999999999999999999999
Q ss_pred chhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 383 DSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 383 D~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
|+|+++ ||...|++ .+| +|.+|++.++++-|
T Consensus 268 D~aiRs--RFEeEIEF-~LP~~eEr~~ile~y~k~~P 301 (368)
T COG1223 268 DPAIRS--RFEEEIEF-KLPNDEERLEILEYYAKKFP 301 (368)
T ss_pred CHHHHh--hhhheeee-eCCChHHHHHHHHHHHHhCC
Confidence 999999 99999999 999 99999999998765
No 18
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-36 Score=293.58 Aligned_cols=187 Identities=39% Similarity=0.665 Sum_probs=171.0
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccC-CCceEECCCCChHHHHHHHHHHhcCCCeeeeehhh
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p-~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~se 299 (418)
+...+++.|+||+|++.+|+.|+|.|-. ++.|+.|+ |.+.| +|+||||||||||+.||+|||.|++..||+|+.++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFt--GkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFT--GKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhc--CCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 4567899999999999999999997776 89999887 45544 89999999999999999999999999999999999
Q ss_pred HHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC-CCCeEEEEEeCC
Q 014798 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNR 378 (418)
Q Consensus 300 fve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~-~~~ViVIatTN~ 378 (418)
++++|.|+.++.|+.+|+.|+++.|+||||||||.++..|+.+ .++...++-.++|.+|+|... +++|+|+++||-
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en---EseasRRIKTEfLVQMqGVG~d~~gvLVLgATNi 278 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN---ESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNI 278 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC---chHHHHHHHHHHHHhhhccccCCCceEEEecCCC
Confidence 9999999999999999999999999999999999999888663 345566788899999999865 468999999999
Q ss_pred CCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 379 ADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 379 ~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
|+.||.|++| ||+++|++ |+| .|..+|++|+.+-|
T Consensus 279 Pw~LDsAIRR--RFekRIYI-PLPe~~AR~~MF~lhlG~tp 316 (439)
T KOG0739|consen 279 PWVLDSAIRR--RFEKRIYI-PLPEAHARARMFKLHLGDTP 316 (439)
T ss_pred chhHHHHHHH--Hhhcceec-cCCcHHHhhhhheeccCCCc
Confidence 9999999999 99999999 999 99999999998765
No 19
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=304.37 Aligned_cols=194 Identities=46% Similarity=0.763 Sum_probs=181.4
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhh
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~se 299 (418)
..+..++++|+||+|++.+++++.+.++. +.+|+.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.+++
T Consensus 135 ~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~ 214 (398)
T PTZ00454 135 QMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSE 214 (398)
T ss_pred cccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHH
Confidence 34567889999999999999999999986 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014798 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (418)
Q Consensus 300 fve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~ 379 (418)
+..+|+|+++..++++|..|+..+||||||||||+++.+|.+...+.+.+.++++.+++.+||++....++.||+|||++
T Consensus 215 l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~ 294 (398)
T PTZ00454 215 FVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRA 294 (398)
T ss_pred HHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCc
Confidence 99999999999999999999999999999999999998886655556677788999999999999888899999999999
Q ss_pred CCcchhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 380 DILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 380 ~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
+.||++++||||||+.|++ ++| +|.+||+.|+++.
T Consensus 295 d~LDpAllR~GRfd~~I~~-~~P~~~~R~~Il~~~~~~~ 332 (398)
T PTZ00454 295 DTLDPALLRPGRLDRKIEF-PLPDRRQKRLIFQTITSKM 332 (398)
T ss_pred hhCCHHHcCCCcccEEEEe-CCcCHHHHHHHHHHHHhcC
Confidence 9999999999999999999 899 9999999998764
No 20
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-36 Score=294.61 Aligned_cols=191 Identities=45% Similarity=0.747 Sum_probs=182.6
Q ss_pred cCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 014798 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv 301 (418)
+....++|+++.|.-.+..++++.++. +.+|..|..+|+++|++++||||||||||++|++||...+++|+.++.++++
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 344578999999999999999999988 9999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 302 e~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
++|.|+.+..+|+.|..|+.+.|||||+||||+++..+....+..+.+.++||.+|+++||+|+....|-+|+|||+|+.
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT 283 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc
Confidence 99999999999999999999999999999999999999777778899999999999999999999999999999999999
Q ss_pred cchhhhCCCccceEEEecCch---HHHHHHHHhhcc
Q 014798 382 LDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 382 LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~ 414 (418)
|||+|+||||+|+.++. |+| .|.+|++.|...
T Consensus 284 LdpaLlRpGRldrk~~i-Plpne~~r~~I~Kih~~~ 318 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEI-PLPNEQARLGILKIHVQP 318 (388)
T ss_pred cchhhcCCccccceecc-CCcchhhceeeEeecccc
Confidence 99999999999999999 899 999999999764
No 21
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-35 Score=311.70 Aligned_cols=188 Identities=43% Similarity=0.750 Sum_probs=177.9
Q ss_pred CCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve 302 (418)
+..++.|+||+|+.++|+.+++.+++ -+.|..|.+.+.+.+.|+|||||||||||+||.|+|...+..|++|.+.++.+
T Consensus 660 k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~ 739 (952)
T KOG0735|consen 660 KSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS 739 (952)
T ss_pred ccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH
Confidence 44569999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 303 ~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
+|.|..+..||++|.+|+..+|||+|+||+|.++++||.+.+|-. .+++||||++|||.+.-+||.|+|||.|||.|
T Consensus 740 KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVT---DRVVNQlLTelDG~Egl~GV~i~aaTsRpdli 816 (952)
T KOG0735|consen 740 KYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVT---DRVVNQLLTELDGAEGLDGVYILAATSRPDLI 816 (952)
T ss_pred HHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCch---HHHHHHHHHhhccccccceEEEEEecCCcccc
Confidence 999999999999999999999999999999999999998766554 46899999999999999999999999999999
Q ss_pred chhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 383 DSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 383 D~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
||||+||||+|+.++. ++| +|.+||++....+
T Consensus 817 DpALLRpGRlD~~v~C-~~P~~~eRl~il~~ls~s~ 851 (952)
T KOG0735|consen 817 DPALLRPGRLDKLVYC-PLPDEPERLEILQVLSNSL 851 (952)
T ss_pred CHhhcCCCccceeeeC-CCCCcHHHHHHHHHHhhcc
Confidence 9999999999999999 888 9999999887644
No 22
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-36 Score=297.79 Aligned_cols=187 Identities=40% Similarity=0.631 Sum_probs=170.9
Q ss_pred cCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccC-CCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 014798 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p-~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef 300 (418)
..+++++|+||+|+.++|+-|+|.|-. +..|+.|. |++.| +|||++||||||||+||||||.|++..||.|+.+.+
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhh
Confidence 356889999999999999999997776 88898776 44444 999999999999999999999999999999999999
Q ss_pred HHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCC-CC---eEEEEEe
Q 014798 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN-TG---IIVIAAT 376 (418)
Q Consensus 301 ve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~-~~---ViVIatT 376 (418)
.++|-|+.++.||-+|+.|+..+|++|||||||+|+.+|+.. +.|+...++-++||.+|||.... ++ |.|+|+|
T Consensus 282 tSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s--~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAAT 359 (491)
T KOG0738|consen 282 TSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS--SEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAAT 359 (491)
T ss_pred hhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc--cchhHHHHHHHHHHHHhhccccccccceeEEEEecc
Confidence 999999999999999999999999999999999999999763 56788888999999999998653 33 8899999
Q ss_pred CCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 377 NRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 377 N~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
|.|++||+||+| ||.+.|++ ++| +|..++++.++..+
T Consensus 360 N~PWdiDEAlrR--RlEKRIyI-PLP~~~~R~~Li~~~l~~~~ 399 (491)
T KOG0738|consen 360 NFPWDIDEALRR--RLEKRIYI-PLPDAEARSALIKILLRSVE 399 (491)
T ss_pred CCCcchHHHHHH--HHhhheee-eCCCHHHHHHHHHHhhcccc
Confidence 999999999999 99999999 999 99999999987654
No 23
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=1.4e-34 Score=296.58 Aligned_cols=195 Identities=50% Similarity=0.803 Sum_probs=181.5
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhh
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~se 299 (418)
.....+.++|+||+|++++++++.+.++. +.+++.|..+|..+|+|+||+||||||||++|+++|.+++.+|+.+++++
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 34566789999999999999999999887 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014798 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (418)
Q Consensus 300 fve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~ 379 (418)
+...|+|.++..++++|+.|+.++||||||||+|+++..++....+++.+.++++.+++.+++++....++.||+|||++
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~ 280 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRI 280 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCCh
Confidence 99999999999999999999999999999999999998887655555677788999999999999888889999999999
Q ss_pred CCcchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 380 DILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 380 ~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
+.+|++++||||||+.|++ ++| +|.+||+.|+++.+
T Consensus 281 ~~ld~allRpgRfd~~I~v-~~P~~~~R~~Il~~~~~~~~ 319 (389)
T PRK03992 281 DILDPAILRPGRFDRIIEV-PLPDEEGRLEILKIHTRKMN 319 (389)
T ss_pred hhCCHHHcCCccCceEEEE-CCCCHHHHHHHHHHHhccCC
Confidence 9999999999999999999 888 99999999997653
No 24
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-35 Score=305.96 Aligned_cols=188 Identities=50% Similarity=0.801 Sum_probs=176.8
Q ss_pred CCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve 302 (418)
..+.++|+|++|++++|+.+.+.+++ ++.++.|...+.+.|+|+||+||||||||+||+|+|.+.+.+|+.+.++++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 45789999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 303 ~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
+|+|+.++.++++|..|++.+||||||||+|++.+.|+... +....+.++++|.+||+.....+|+||+|||+|+.+
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~---~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE---DGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC---chHHHHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 99999999999999999999999999999999999986532 222368999999999999999999999999999999
Q ss_pred chhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 383 DSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 383 D~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
|+|++||||||+.+++ ++| +|.+||+.|++..
T Consensus 392 d~a~lR~gRfd~~i~v-~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 392 DPALLRPGRFDRLIYV-PLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred CHhhcccCccceEeec-CCCCHHHHHHHHHHHhccc
Confidence 9999999999999999 999 9999999999853
No 25
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=8.9e-36 Score=308.62 Aligned_cols=194 Identities=42% Similarity=0.753 Sum_probs=181.9
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhh
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~se 299 (418)
..+..+..+|+||+|++++++++.+.++. +.+|+.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.+++
T Consensus 173 ~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~se 252 (438)
T PTZ00361 173 KVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSE 252 (438)
T ss_pred ccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecch
Confidence 44567889999999999999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014798 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (418)
Q Consensus 300 fve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~ 379 (418)
+...|.|.++..++++|..|..++||||||||||+++.+|....+++..+.++++.++|.++|++....++.||+|||++
T Consensus 253 L~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~ 332 (438)
T PTZ00361 253 LIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRI 332 (438)
T ss_pred hhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCCh
Confidence 99999999999999999999999999999999999998887666666777888999999999999888889999999999
Q ss_pred CCcchhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 380 DILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 380 ~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
+.||++++||||||+.|++ ++| +|.+||+.|+++.
T Consensus 333 d~LDpaLlRpGRfd~~I~~-~~Pd~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 333 ESLDPALIRPGRIDRKIEF-PNPDEKTKRRIFEIHTSKM 370 (438)
T ss_pred HHhhHHhccCCeeEEEEEe-CCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999 888 9999999998764
No 26
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=8.9e-34 Score=297.82 Aligned_cols=195 Identities=37% Similarity=0.667 Sum_probs=173.9
Q ss_pred ccccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC-------
Q 014798 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------- 291 (418)
Q Consensus 220 ~~~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p------- 291 (418)
+..+..++++|+||+|++++++++++.+.. +.+++.|...|.++|+|+|||||||||||++|+++|++++.+
T Consensus 171 l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~ 250 (512)
T TIGR03689 171 LVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGD 250 (512)
T ss_pred ceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCC
Confidence 445667899999999999999999998887 899999999999999999999999999999999999998654
Q ss_pred ---eeeeehhhHHHHhhhcchhHHHHHHHHHHhC----CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCC
Q 014798 292 ---FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 364 (418)
Q Consensus 292 ---fi~vs~sefve~~vg~~~~~vr~lF~~A~~~----aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~ 364 (418)
|+.++++++..+|+|+.+..++.+|+.++.. .||||||||+|+++++|+.+. .++.....+++||.+||++
T Consensus 251 ~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~--s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 251 KSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV--SSDVETTVVPQLLSELDGV 328 (512)
T ss_pred ceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc--cchHHHHHHHHHHHHhccc
Confidence 6677888999999999999999999998764 699999999999998886532 2334456789999999999
Q ss_pred CCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccCCC
Q 014798 365 EGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKDP 417 (418)
Q Consensus 365 ~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~p 417 (418)
...++++||+|||+++.||+|++||||||++|++ ++| +|.+||+.|+...-|
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~-~~Pd~e~r~~Il~~~l~~~l~ 383 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRI-ERPDAEAAADIFSKYLTDSLP 383 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEe-CCCCHHHHHHHHHHHhhccCC
Confidence 9888999999999999999999999999999999 888 999999999876544
No 27
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.4e-33 Score=310.04 Aligned_cols=189 Identities=48% Similarity=0.797 Sum_probs=176.6
Q ss_pred CCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 014798 225 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (418)
Q Consensus 225 ~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~ 303 (418)
.+.++|+||+|++++|+++.+.+.+ +++++.|..+|.+.|+|+|||||||||||++|+++|++++.+|+.++++++.++
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 4678999999999999999999987 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcc
Q 014798 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (418)
Q Consensus 304 ~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD 383 (418)
|+|+++..++++|+.|+..+||||||||||++++.|+... .+...++.+++||.+||++....+++||+|||+++.||
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld 604 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILD 604 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCC
Confidence 9999999999999999999999999999999998886432 23345678999999999998888999999999999999
Q ss_pred hhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 384 SALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 384 ~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
++++||||||+.+++ ++| +|.+||+.|+++.+
T Consensus 605 ~allRpgRfd~~i~v-~~Pd~~~R~~i~~~~~~~~~ 639 (733)
T TIGR01243 605 PALLRPGRFDRLILV-PPPDEEARKEIFKIHTRSMP 639 (733)
T ss_pred HhhcCCCccceEEEe-CCcCHHHHHHHHHHHhcCCC
Confidence 999999999999999 999 99999999987654
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=4.6e-32 Score=275.34 Aligned_cols=196 Identities=49% Similarity=0.799 Sum_probs=180.6
Q ss_pred ccccCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehh
Q 014798 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (418)
Q Consensus 220 ~~~~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~s 298 (418)
+.....+.++|+||+|++++++++.+.+.. +.+++.|..+|...|+|+||+||||||||++|+++|++++.+|+.+.++
T Consensus 111 ~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~ 190 (364)
T TIGR01242 111 MEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 190 (364)
T ss_pred ceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchH
Confidence 344567889999999999999999999886 8999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014798 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (418)
Q Consensus 299 efve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~ 378 (418)
++...++|.+...++++|+.++...|+||||||+|.++..+.....+++.+.++++.+++.+++++....++.||+|||+
T Consensus 191 ~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~ 270 (364)
T TIGR01242 191 ELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR 270 (364)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999887765555667778899999999999887788999999999
Q ss_pred CCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 379 ADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 379 ~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
++.+|++++||||||+.|.+ ++| +|.+||+.|+++.+
T Consensus 271 ~~~ld~al~r~grfd~~i~v-~~P~~~~r~~Il~~~~~~~~ 310 (364)
T TIGR01242 271 PDILDPALLRPGRFDRIIEV-PLPDFEGRLEILKIHTRKMK 310 (364)
T ss_pred hhhCChhhcCcccCceEEEe-CCcCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999 888 99999999987643
No 29
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3.4e-32 Score=285.54 Aligned_cols=185 Identities=29% Similarity=0.455 Sum_probs=162.9
Q ss_pred CCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHh
Q 014798 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (418)
Q Consensus 225 ~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~ 304 (418)
.++.+|+||+|++.+|+.+.+....+ +..+...|.+.|+|+||+||||||||++|+++|++++.||+.++++++...|
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 35789999999999999998865543 2344567999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcch
Q 014798 305 VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (418)
Q Consensus 305 vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ 384 (418)
+|+++.+++++|+.|+..+||||||||||.++..+... +......+++++++..|++ .+.+|+||+|||+++.||+
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCH
Confidence 99999999999999999999999999999998654321 2334567889999999984 3467999999999999999
Q ss_pred hhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 385 ALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 385 ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
+++|+||||+.+++ ++| +|.+||+.|+++..
T Consensus 376 allR~GRFD~~i~v-~lP~~~eR~~Il~~~l~~~~ 409 (489)
T CHL00195 376 EILRKGRFDEIFFL-DLPSLEEREKIFKIHLQKFR 409 (489)
T ss_pred HHhCCCcCCeEEEe-CCcCHHHHHHHHHHHHhhcC
Confidence 99999999999999 999 99999999998754
No 30
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=1.5e-31 Score=268.43 Aligned_cols=188 Identities=17% Similarity=0.201 Sum_probs=148.6
Q ss_pred CCCcccccc-cCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 014798 225 NTGVTFDDV-AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (418)
Q Consensus 225 ~~~~~f~dV-~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~ 303 (418)
....+|+++ .|.--.+.-+.+++-.+.... ...+|+++|++++||||||||||++|+++|++++++|+.+++.++.++
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~-l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNF-LALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhh-hhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 345678888 555555555555443322221 123688999999999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHHHh-----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCC------------CC
Q 014798 304 FVGVGASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF------------EG 366 (418)
Q Consensus 304 ~vg~~~~~vr~lF~~A~~-----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~------------~~ 366 (418)
|+|++++.+|++|+.|.. .+||||||||||++++.|+.. +..-..+.+..+||++||+. ..
T Consensus 188 ~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~ 265 (413)
T PLN00020 188 NAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEE 265 (413)
T ss_pred cCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC--CcchHHHHHHHHHHHHhcCCcccccccccccccc
Confidence 999999999999999975 469999999999999988632 12222233347999998853 34
Q ss_pred CCCeEEEEEeCCCCCcchhhhCCCccceEEEecCchHHHHHHHHhhccC
Q 014798 367 NTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLSLMLWFLKTHSQYK 415 (418)
Q Consensus 367 ~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP~R~~IL~~~l~~k 415 (418)
..+|.||+|||+|+.||++|+||||||+.+.+|..-+|.+||+.|+++.
T Consensus 266 ~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R~eIL~~~~r~~ 314 (413)
T PLN00020 266 IPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVVHGIFRDD 314 (413)
T ss_pred CCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHHHHHHHHHHhccC
Confidence 5679999999999999999999999999764411119999999999864
No 31
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-31 Score=265.80 Aligned_cols=187 Identities=37% Similarity=0.594 Sum_probs=170.9
Q ss_pred cCCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcC-CccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 014798 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIG-ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG-~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef 300 (418)
...-.++|+||.|++++++++++.|-. ++.|+.|..-+ .++|+|+||+||||||||++|+|+|++++.+|+.|+++.+
T Consensus 84 p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~l 163 (386)
T KOG0737|consen 84 PSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNL 163 (386)
T ss_pred hhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecccc
Confidence 344579999999999999999998887 99999986332 3478999999999999999999999999999999999999
Q ss_pred HHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCC--eEEEEEeCC
Q 014798 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG--IIVIAATNR 378 (418)
Q Consensus 301 ve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~--ViVIatTN~ 378 (418)
.++|.|++.+.++.+|..|.+-.||||||||+|.+.+.|+ ++.|+.....-+|++...||+..+++ |+|++||||
T Consensus 164 t~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNR 240 (386)
T KOG0737|consen 164 TSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNR 240 (386)
T ss_pred chhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCC
Confidence 9999999999999999999999999999999999999884 35677777788999999999988766 999999999
Q ss_pred CCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 379 ADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 379 ~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
|.+||.|++| |+.+.+.| ++| +|++||++.+++-
T Consensus 241 P~DlDeAiiR--R~p~rf~V-~lP~~~qR~kILkviLk~e 277 (386)
T KOG0737|consen 241 PFDLDEAIIR--RLPRRFHV-GLPDAEQRRKILKVILKKE 277 (386)
T ss_pred CccHHHHHHH--hCcceeee-CCCchhhHHHHHHHHhccc
Confidence 9999999999 99999999 999 9999999999764
No 32
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.97 E-value=3.9e-31 Score=301.17 Aligned_cols=146 Identities=23% Similarity=0.356 Sum_probs=127.9
Q ss_pred hhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHh-------------------------------
Q 014798 256 FTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF------------------------------- 304 (418)
Q Consensus 256 ~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~------------------------------- 304 (418)
+.++|+++|+||||+||||||||+||||+|+++++||+.|++++|++.+
T Consensus 1622 slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~ 1701 (2281)
T CHL00206 1622 SLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTEL 1701 (2281)
T ss_pred HHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhh
Confidence 4578999999999999999999999999999999999999999998643
Q ss_pred ------------hhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC---CCCC
Q 014798 305 ------------VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---GNTG 369 (418)
Q Consensus 305 ------------vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~---~~~~ 369 (418)
+++++.+++++|+.|++.+||||||||||+++.+ ++...++++|+++||+.. ...+
T Consensus 1702 ~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~---------ds~~ltL~qLLneLDg~~~~~s~~~ 1772 (2281)
T CHL00206 1702 LTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN---------ESNYLSLGLLVNSLSRDCERCSTRN 1772 (2281)
T ss_pred hhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC---------ccceehHHHHHHHhccccccCCCCC
Confidence 2334456999999999999999999999999764 223457999999999874 3568
Q ss_pred eEEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHh
Q 014798 370 IIVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTH 411 (418)
Q Consensus 370 ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~ 411 (418)
|+||||||+|+.|||||+||||||+.|.+ ++| +|++++.++
T Consensus 1773 VIVIAATNRPD~LDPALLRPGRFDR~I~I-r~Pd~p~R~kiL~IL 1816 (2281)
T CHL00206 1773 ILVIASTHIPQKVDPALIAPNKLNTCIKI-RRLLIPQQRKHFFTL 1816 (2281)
T ss_pred EEEEEeCCCcccCCHhHcCCCCCCeEEEe-CCCCchhHHHHHHHH
Confidence 99999999999999999999999999999 766 999988754
No 33
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2e-29 Score=277.40 Aligned_cols=188 Identities=37% Similarity=0.639 Sum_probs=174.7
Q ss_pred CCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-----CCCeeeeehh
Q 014798 225 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGS 298 (418)
Q Consensus 225 ~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~vs~s 298 (418)
...++|++|+|++.++.+++|+|.+ +-.|+.|..+++.+|+|||++||||||||+.|+|+|..+ .+.|+.-.++
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 4579999999999999999999988 999999999999999999999999999999999999877 5678888999
Q ss_pred hHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014798 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (418)
Q Consensus 299 efve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~ 378 (418)
+..++|+|+.+...|.+|+.|++..|+|||+||||-+++.|... ....+..+...||..|||......|+||+||||
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk---qEqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK---QEQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch---HHHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 99999999999999999999999999999999999999988542 344566788999999999999999999999999
Q ss_pred CCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 379 ADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 379 ~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
++.+||||+|||||||.+++ ++| .|.+|+.+|.++-.
T Consensus 416 pda~dpaLRRPgrfdref~f-~lp~~~ar~~Il~Ihtrkw~ 455 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYF-PLPDVDARAKILDIHTRKWE 455 (1080)
T ss_pred ccccchhhcCCcccceeEee-eCCchHHHHHHHHHhccCCC
Confidence 99999999999999999999 999 99999999998744
No 34
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.8e-29 Score=256.96 Aligned_cols=193 Identities=38% Similarity=0.600 Sum_probs=164.7
Q ss_pred cccCCCCccccc--ccCchHHHHHHHH--HHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCC-Ceeee
Q 014798 221 QMEPNTGVTFDD--VAGVDEAKQDFME--VVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-PFFSI 295 (418)
Q Consensus 221 ~~~~~~~~~f~d--V~G~de~k~eL~e--~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~-pfi~v 295 (418)
...-.+++.|++ |.|++..-..+-+ +...+-.|+.-.++|++.-+|+|||||||||||++||.|..-++. +--.|
T Consensus 209 n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIV 288 (744)
T KOG0741|consen 209 NSIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIV 288 (744)
T ss_pred ccccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCccc
Confidence 344567888987 4577766555443 334477888889999999999999999999999999999998854 56678
Q ss_pred ehhhHHHHhhhcchhHHHHHHHHHHhC--------CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 014798 296 SGSEFVEMFVGVGASRVRDLFKKAKEN--------APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (418)
Q Consensus 296 s~sefve~~vg~~~~~vr~lF~~A~~~--------aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~ 367 (418)
++.+..++|||++++.+|++|+.|... .--||++||||+++++||... ++..-..+++||||..|||.+.-
T Consensus 289 NGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~-g~TGVhD~VVNQLLsKmDGVeqL 367 (744)
T KOG0741|consen 289 NGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMA-GSTGVHDTVVNQLLSKMDGVEQL 367 (744)
T ss_pred CcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCC-CCCCccHHHHHHHHHhcccHHhh
Confidence 999999999999999999999998541 224999999999999998642 33445578999999999999999
Q ss_pred CCeEEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 368 TGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 368 ~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
++++||+-|||+|.+|+||+|||||.-++++ .+| +|.+||++|+++.
T Consensus 368 NNILVIGMTNR~DlIDEALLRPGRlEVqmEI-sLPDE~gRlQIl~IHT~rM 417 (744)
T KOG0741|consen 368 NNILVIGMTNRKDLIDEALLRPGRLEVQMEI-SLPDEKGRLQILKIHTKRM 417 (744)
T ss_pred hcEEEEeccCchhhHHHHhcCCCceEEEEEE-eCCCccCceEEEEhhhhhh
Confidence 9999999999999999999999999999999 999 9999999999764
No 35
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.9e-28 Score=257.70 Aligned_cols=184 Identities=41% Similarity=0.677 Sum_probs=173.4
Q ss_pred CCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHh
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~ 304 (418)
.+++ ++++|.......+.+.+++ +.++..|...|.++|+|+|+|||||||||.+++|||++.++.++.+++++++..+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5677 8999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHhCC-CeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcc
Q 014798 305 VGVGASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (418)
Q Consensus 305 vg~~~~~vr~lF~~A~~~a-P~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD 383 (418)
.|++++.+|+.|+.|.+++ |+||||||+|+++++|... +.-..++..||++.||+.....+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~----~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA----DDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc----chHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999999 9999999999999988542 2235678999999999999888999999999999999
Q ss_pred hhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 384 SALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 384 ~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
++++| ||||+.+.+ ..| +|.+|+++|+++++
T Consensus 335 ~alRR-gRfd~ev~I-giP~~~~RldIl~~l~k~~~ 368 (693)
T KOG0730|consen 335 PALRR-GRFDREVEI-GIPGSDGRLDILRVLTKKMN 368 (693)
T ss_pred hhhhc-CCCcceeee-cCCCchhHHHHHHHHHHhcC
Confidence 99999 999999999 999 99999999998865
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=2.5e-28 Score=268.46 Aligned_cols=188 Identities=48% Similarity=0.784 Sum_probs=172.4
Q ss_pred CCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 014798 225 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (418)
Q Consensus 225 ~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~ 303 (418)
.+.++|+||+|.+++++++.+++.. +.+|+.|..+|...|+|+||+||||||||++|+++|++++.+|+.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4679999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcc
Q 014798 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (418)
Q Consensus 304 ~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD 383 (418)
+.|.....++.+|+.|..+.|+||||||||.+..+++... .....+.+++|+..|+++.....++||++||+++.||
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~---~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT---GEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc---chHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999998875422 2233567899999999998888899999999999999
Q ss_pred hhhhCCCccceEEEecCch---HHHHHHHHhhccCC
Q 014798 384 SALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYKD 416 (418)
Q Consensus 384 ~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k~ 416 (418)
++++|+||||+.+.+ ++| +|.+||+.|.++.+
T Consensus 329 ~al~r~gRfd~~i~i-~~P~~~~R~~Il~~~~~~~~ 363 (733)
T TIGR01243 329 PALRRPGRFDREIVI-RVPDKRARKEILKVHTRNMP 363 (733)
T ss_pred HHHhCchhccEEEEe-CCcCHHHHHHHHHHHhcCCC
Confidence 999999999999999 888 99999999887653
No 37
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=6.4e-27 Score=239.39 Aligned_cols=185 Identities=37% Similarity=0.592 Sum_probs=165.0
Q ss_pred CCCCcccccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve 302 (418)
...++.|+|++|++.+|+.+.+.+-+ +.+++.|..+. .+++|+||.||||||||+|++|||.|.++.|+.++++.+..
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 34679999999999999999999888 67788876443 23589999999999999999999999999999999999999
Q ss_pred HhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC--CCCeEEEEEeCCCC
Q 014798 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--NTGIIVIAATNRAD 380 (418)
Q Consensus 303 ~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~--~~~ViVIatTN~~~ 380 (418)
+|+|++++.+|.+|.-|+...|+||||||||.+..+|.+ ..++...+...++|.++++... +++|+||+|||+|+
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~ 301 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPW 301 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCch
Confidence 999999999999999999999999999999999999944 3455556778889989888754 45799999999999
Q ss_pred CcchhhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 381 ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 381 ~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
.+|.|++| ||.+.+++ ++| .|..+++..+++.
T Consensus 302 e~Dea~~R--rf~kr~yi-plPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 302 ELDEAARR--RFVKRLYI-PLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred HHHHHHHH--Hhhceeee-cCCCHHHHHHHHHHHHHhC
Confidence 99999999 99999999 999 9999999888765
No 38
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.90 E-value=1.7e-23 Score=179.40 Aligned_cols=130 Identities=46% Similarity=0.783 Sum_probs=117.3
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhhcchhHHHHHHHHHHhCC-CeEEEEcCCcccccccCCCCCC
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGG 345 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~~a-P~IIfIDEIDal~~~r~~~~~~ 345 (418)
+||+||||||||++|+++|+.++.+++.+++.++.+.+.+.....++++|.+++... |+||||||+|.+.... ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 689999999999999999999999999999999998888999999999999999888 9999999999999876 123
Q ss_pred CChHHHHHHHHHHHHhcCCCCC-CCeEEEEEeCCCCCcchhhhCCCccceEEEecCc
Q 014798 346 GNDEREQTLNQLLTEMDGFEGN-TGIIVIAATNRADILDSALLRPGRFDRQVKHVSL 401 (418)
Q Consensus 346 ~~~e~~~~L~~LL~emdg~~~~-~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~l 401 (418)
.+......+++|+..++..... .++++|+|||.++.++++++| +||++.+++ ++
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~-~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEF-PL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE--S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEc-CC
Confidence 5667778899999999988765 569999999999999999998 899999998 53
No 39
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.7e-23 Score=212.02 Aligned_cols=179 Identities=26% Similarity=0.390 Sum_probs=146.2
Q ss_pred CcccccccCchHHHHHHHH-HHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhh
Q 014798 227 GVTFDDVAGVDEAKQDFME-VVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e-~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~v 305 (418)
+-+|+.++-..+.|++|.+ +.+|++..+-|.+.|...-+|.|||||||||||+++.|+|++++..++-++.++...
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~--- 273 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL--- 273 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC---
Confidence 3799999999999999887 556699999999999999999999999999999999999999999999998877432
Q ss_pred hcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCC---CCC-hHHHHHHHHHHHHhcCCCCCC--CeEEEEEeCCC
Q 014798 306 GVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG---GGN-DEREQTLNQLLTEMDGFEGNT--GIIVIAATNRA 379 (418)
Q Consensus 306 g~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~---~~~-~e~~~~L~~LL~emdg~~~~~--~ViVIatTN~~ 379 (418)
.. .+|.++..+... +||+|+|||+-...+..... +.. ....-++..||+.+||.+... .-|+|+|||.+
T Consensus 274 --n~-dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 274 --DS-DLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred --cH-HHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 22 378888776544 69999999997553322111 111 123468999999999999876 58999999999
Q ss_pred CCcchhhhCCCccceEEEecCch---HHHHHHHHhhcc
Q 014798 380 DILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 380 ~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~ 414 (418)
+.|||||+||||+|.+|++ ++. +-..+++.++.-
T Consensus 349 EkLDPALlRpGRmDmhI~m-gyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYM-GYCTFEAFKTLASNYLGI 385 (457)
T ss_pred hhcCHhhcCCCcceeEEEc-CCCCHHHHHHHHHHhcCC
Confidence 9999999999999999999 887 556666666644
No 40
>CHL00181 cbbX CbbX; Provisional
Probab=99.84 E-value=2.8e-20 Score=183.95 Aligned_cols=174 Identities=20% Similarity=0.309 Sum_probs=137.6
Q ss_pred cccccCchHHHHHHHHHHHHhcCchhhhhcCCccCC---CceEECCCCChHHHHHHHHHHhc-------CCCeeeeehhh
Q 014798 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK---GVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSE 299 (418)
Q Consensus 230 f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~---gVLL~GPPGTGKT~LArAIA~el-------~~pfi~vs~se 299 (418)
+++++|++++|+++.+++.++..++.+...|...|. +++|+||||||||++|+++|+++ ..+++.+++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 348999999999999999887777777777876652 48999999999999999999875 23699999999
Q ss_pred HHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014798 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (418)
Q Consensus 300 fve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~ 379 (418)
++..|+|..+..++++|+.|. ++||||||+|.+.+.++. ++.....++.|+..|+.. ..+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~-----~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE-----RDYGSEAIEILLQVMENQ--RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc-----cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcH
Confidence 999999988888888888874 369999999999654321 223356777888888754 3457888887643
Q ss_pred C-----CcchhhhCCCccceEEEecCch--HHHHHHHHhhccC
Q 014798 380 D-----ILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQYK 415 (418)
Q Consensus 380 ~-----~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~~k 415 (418)
. .++|++++ ||+..|.++++. ++.+|++.++++.
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~ 212 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQ 212 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHh
Confidence 2 34689999 999999995555 9999999888653
No 41
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.83 E-value=4.4e-20 Score=182.16 Aligned_cols=172 Identities=22% Similarity=0.322 Sum_probs=138.5
Q ss_pred cccCchHHHHHHHHHHHHhcCchhhhhcCCcc--C-CCceEECCCCChHHHHHHHHHHhcC-------CCeeeeehhhHH
Q 014798 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARI--P-KGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSISGSEFV 301 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~--p-~gVLL~GPPGTGKT~LArAIA~el~-------~pfi~vs~sefv 301 (418)
+++|++++|+++.+++.++..++.+.+.|... | .+++|+||||||||++|+++|..+. .+|+++++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 69999999999999999988888888888775 2 4799999999999999999988762 379999999999
Q ss_pred HHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC--
Q 014798 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA-- 379 (418)
Q Consensus 302 e~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~-- 379 (418)
..++|..+..++++|++|. +++|||||+|.+.+.+.. .+.....++.|+..|+.. ..+++||++++..
T Consensus 103 ~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~~-----~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~~ 172 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMENQ--RDDLVVILAGYKDRM 172 (284)
T ss_pred HhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCCc-----cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHH
Confidence 9999988888899998874 369999999998643321 223345677888888743 3567888887643
Q ss_pred C---CcchhhhCCCccceEEEecCch--HHHHHHHHhhccC
Q 014798 380 D---ILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQYK 415 (418)
Q Consensus 380 ~---~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~~k 415 (418)
+ .++|++.+ ||+..|.+|++. ++.+|++.++++.
T Consensus 173 ~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~ 211 (284)
T TIGR02880 173 DSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQ 211 (284)
T ss_pred HHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHh
Confidence 3 25899999 999999996555 9999999888753
No 42
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.83 E-value=7.9e-20 Score=177.71 Aligned_cols=174 Identities=21% Similarity=0.369 Sum_probs=135.1
Q ss_pred ccccccCchHHHHHHHHHHHHhcCchhhhhcCCccC---CCceEECCCCChHHHHHHHHHHhc-------CCCeeeeehh
Q 014798 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIP---KGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGS 298 (418)
Q Consensus 229 ~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p---~gVLL~GPPGTGKT~LArAIA~el-------~~pfi~vs~s 298 (418)
.+++++|++++|+++.+++.+..........|...+ .+++|+||||||||++|+++|+++ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 367899999999999999988766555556666643 468999999999999999999864 3478899999
Q ss_pred hHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014798 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (418)
Q Consensus 299 efve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~ 378 (418)
++...++|.....++++|+.+. ++||||||+|.+.+. +..+.....++.|+..|+.. ...+++|+++..
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~------~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG------GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC------CccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 9999999999999999998874 469999999999632 11223345778899988864 344666666543
Q ss_pred CC-----CcchhhhCCCccceEEEecCch--HHHHHHHHhhccC
Q 014798 379 AD-----ILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQYK 415 (418)
Q Consensus 379 ~~-----~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~~k 415 (418)
.+ .++|++.+ ||+..+.+|++. ++.+|++.+++..
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~ 194 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKER 194 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHc
Confidence 32 36889998 999999995443 8999999887643
No 43
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.6e-19 Score=176.21 Aligned_cols=182 Identities=22% Similarity=0.324 Sum_probs=144.0
Q ss_pred cccccCchHHHHHHHHHHHH-hcCchhhhh-cCCccCCCceEECCCCChHHHHHHHHHHhcC---------CCeeeeehh
Q 014798 230 FDDVAGVDEAKQDFMEVVEF-LKKPERFTA-IGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSISGS 298 (418)
Q Consensus 230 f~dV~G~de~k~eL~e~v~~-l~~p~~~~~-lG~~~p~gVLL~GPPGTGKT~LArAIA~el~---------~pfi~vs~s 298 (418)
|+.++-....|+++...+.. +.-.++-.. -=+...+-+||+||||||||+|+||+|+.+. ..++.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 66666667888888775544 322221111 1123446699999999999999999999873 358899999
Q ss_pred hHHHHhhhcchhHHHHHHHHHHh-----CCCeEEEEcCCcccccccCCCC-CCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 014798 299 EFVEMFVGVGASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGI-GGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (418)
Q Consensus 299 efve~~vg~~~~~vr~lF~~A~~-----~aP~IIfIDEIDal~~~r~~~~-~~~~~e~~~~L~~LL~emdg~~~~~~ViV 372 (418)
.+.++|.++..+.|..+|++... +.-..++|||+++++..|.... +......-+++|.+|++||.....++|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 99999999999999999988754 2223567999999999885432 23345567899999999999999999999
Q ss_pred EEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhcc
Q 014798 373 IAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 373 IatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~ 414 (418)
++|+|-.+.||.|+.. |-|-..++ +.| .|.+|++.++.+
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yV-G~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYV-GPPTAEAIYEILKSCIEE 342 (423)
T ss_pred EeccchHHHHHHHhhh--Hhhheeec-CCccHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999 999 899999877643
No 44
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.1e-18 Score=173.97 Aligned_cols=177 Identities=24% Similarity=0.354 Sum_probs=141.9
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhh
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~v 305 (418)
..-.|++|+-....+..|+++...-.+.+. ...+-+++|+|||||||||++||-+|...|..+-.+.+.|.. ..-
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~----h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKK----HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLG 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccc----ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccc
Confidence 445589999999999988887766444432 122336899999999999999999999999999998888753 222
Q ss_pred hcchhHHHHHHHHHHhCCC-eEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcch
Q 014798 306 GVGASRVRDLFKKAKENAP-CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (418)
Q Consensus 306 g~~~~~vr~lF~~A~~~aP-~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ 384 (418)
..+...+.++|+.+++... -++||||.|++..+|.. ....+.....||.||-... +...+++++.+||+|+++|.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk--tymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK--TYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch--hhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhH
Confidence 3455678999999987543 58999999999998865 2345566778999987654 33456999999999999999
Q ss_pred hhhCCCccceEEEecCch---HHHHHHHHhhcc
Q 014798 385 ALLRPGRFDRQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 385 ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~ 414 (418)
|+-. |||..++| ++| +|..+|..|+.+
T Consensus 501 AV~D--Ride~veF-pLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 501 AVND--RIDEVVEF-PLPGEEERFKLLNLYLNK 530 (630)
T ss_pred HHHh--hhhheeec-CCCChHHHHHHHHHHHHH
Confidence 9999 99999999 999 999999998854
No 45
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.71 E-value=7.4e-17 Score=178.84 Aligned_cols=162 Identities=30% Similarity=0.413 Sum_probs=119.3
Q ss_pred ccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH---------
Q 014798 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV--------- 301 (418)
Q Consensus 231 ~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv--------- 301 (418)
+++.|++++++.+.+.+....... ...+..++|+||||||||++|+++|++++.+|+.+++..+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 358999999999988766432111 11123699999999999999999999999999999765432
Q ss_pred HHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcC-----CCC--------CC
Q 014798 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FEG--------NT 368 (418)
Q Consensus 302 e~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg-----~~~--------~~ 368 (418)
..|+|....++.+.|..+....| ||||||||.+.+... ++ ..+.|+..+|. |.. ..
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~-----~~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s 462 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFR-----GD-----PASALLEVLDPEQNNAFSDHYLDVPFDLS 462 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccC-----CC-----HHHHHHHhcCHHhcCccccccCCceeccC
Confidence 24667777788888888866666 889999999985321 11 13345554442 111 14
Q ss_pred CeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhh
Q 014798 369 GIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHS 412 (418)
Q Consensus 369 ~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l 412 (418)
++++|+|||..+.++++|++ ||+ .|.++++. ++.+|++.|+
T Consensus 463 ~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 463 KVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 68999999999999999999 995 67884444 8999999886
No 46
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.67 E-value=5.7e-16 Score=147.34 Aligned_cols=156 Identities=30% Similarity=0.393 Sum_probs=100.2
Q ss_pred CCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~ 303 (418)
.-.+.+|+|++|+++++..+.-+++..+... ....+++||||||+|||+||+.||++++.+|...++..+.
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~-- 87 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE-- 87 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC----
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh--
Confidence 3456799999999999999888877654321 1123699999999999999999999999999999886532
Q ss_pred hhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC--------C--------
Q 014798 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--------N-------- 367 (418)
Q Consensus 304 ~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~--------~-------- 367 (418)
....+..++..... ..|+|||||+.+.+. ....|+..|+.+.- +
T Consensus 88 ----k~~dl~~il~~l~~--~~ILFIDEIHRlnk~--------------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 88 ----KAGDLAAILTNLKE--GDILFIDEIHRLNKA--------------QQEILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp ----SCHHHHHHHHT--T--T-EEEECTCCC--HH--------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred ----hHHHHHHHHHhcCC--CcEEEEechhhccHH--------------HHHHHHHHhccCeEEEEeccccccceeeccC
Confidence 22334445544433 469999999999532 23345555554421 1
Q ss_pred CCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHH
Q 014798 368 TGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKT 410 (418)
Q Consensus 368 ~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~ 410 (418)
..+.+|+||.+...|.+.|+. ||.....+-.+. +-.+|++.
T Consensus 148 ~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r 190 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKR 190 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHH
T ss_pred CCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHH
Confidence 248999999999999999999 998766652222 55555553
No 47
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.67 E-value=3.4e-16 Score=172.59 Aligned_cols=163 Identities=23% Similarity=0.360 Sum_probs=124.5
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc----------CCCeeee
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~v 295 (418)
.+-++++++|.++..+.+.+++. .. ...+++|+||||||||++|+++|.++ +..++.+
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~---~~---------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLC---RR---------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHh---cC---------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 45578999999988886655443 22 13479999999999999999999987 6779999
Q ss_pred ehhhHH--HHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEE
Q 014798 296 SGSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (418)
Q Consensus 296 s~sefv--e~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVI 373 (418)
+++.+. ..|.|+.+.+++++|+.+.++.++||||||||.+....... +++.. ..+.|...+. +..+.+|
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~--~~~~~---~~~~L~~~l~----~g~i~~I 315 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATS--GGSMD---ASNLLKPALS----SGKLRCI 315 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCC--CccHH---HHHHHHHHHh----CCCeEEE
Confidence 998887 46888999999999999988889999999999997654221 11112 2233334443 3568999
Q ss_pred EEeCCCC-----CcchhhhCCCccceEEEecCch---HHHHHHHHhhc
Q 014798 374 AATNRAD-----ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQ 413 (418)
Q Consensus 374 atTN~~~-----~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~ 413 (418)
++||..+ .+|+|+.| ||+ .|.+ +.| ++.+||+.+..
T Consensus 316 gaTt~~e~~~~~~~d~al~r--Rf~-~i~v-~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSR--RFQ-KIDV-GEPSIEETVKILKGLKE 359 (731)
T ss_pred EecCHHHHHHHhhhhHHHHH--hCc-eEEe-CCCCHHHHHHHHHHHHH
Confidence 9999643 57999999 997 6888 777 88999986554
No 48
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.64 E-value=1.7e-15 Score=151.96 Aligned_cols=162 Identities=26% Similarity=0.349 Sum_probs=115.0
Q ss_pred CCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~ 303 (418)
...+.+|+|++|.++.++.+...+...+.+. ..+.+++|+||||||||++|+++|++++..+..+++..+.
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~-------~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~-- 88 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKRG-------EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE-- 88 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhcC-------CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc--
Confidence 4456799999999999999998887643321 2356899999999999999999999999998887765431
Q ss_pred hhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHh------cC-CC------CCCCe
Q 014798 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM------DG-FE------GNTGI 370 (418)
Q Consensus 304 ~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~em------dg-~~------~~~~V 370 (418)
....+..++... ..++||||||||.+... .+..+..+++.. +. .. .-..+
T Consensus 89 ----~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~-----------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~ 151 (328)
T PRK00080 89 ----KPGDLAAILTNL--EEGDVLFIDEIHRLSPV-----------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPF 151 (328)
T ss_pred ----ChHHHHHHHHhc--ccCCEEEEecHhhcchH-----------HHHHHHHHHHhcceeeeeccCccccceeecCCCc
Confidence 122344444443 34679999999998431 122333333321 00 00 01347
Q ss_pred EEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhcc
Q 014798 371 IVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 371 iVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~ 414 (418)
.+|++||++..++++|++ ||+..+.+ +.| ++.+|++.++..
T Consensus 152 ~li~at~~~~~l~~~L~s--Rf~~~~~l-~~~~~~e~~~il~~~~~~ 195 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRD--RFGIVQRL-EFYTVEELEKIVKRSARI 195 (328)
T ss_pred eEEeecCCcccCCHHHHH--hcCeeeec-CCCCHHHHHHHHHHHHHH
Confidence 889999999999999988 99888888 555 888888877653
No 49
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.62 E-value=3.9e-15 Score=146.99 Aligned_cols=153 Identities=25% Similarity=0.391 Sum_probs=107.9
Q ss_pred ccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhhcc
Q 014798 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVG 308 (418)
Q Consensus 229 ~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg~~ 308 (418)
+|+|++|+++.++++..++....... ..+.+++|+||||||||+||+++|++++.++..++++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~-------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ-------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC-------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 69999999999999988886533221 23457999999999999999999999998887776543211
Q ss_pred hhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC----------------CCCCeEE
Q 014798 309 ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE----------------GNTGIIV 372 (418)
Q Consensus 309 ~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~----------------~~~~ViV 372 (418)
...+...+... ..+.++||||+|.+... .+.. |+..|+.+. ....+.+
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~-----------~~e~---l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 132 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPA-----------VEEL---LYPAMEDFRLDIVIGKGPSARSVRLDLPPFTL 132 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHH-----------HHHH---hhHHHhhhheeeeeccCccccceeecCCCeEE
Confidence 11223333332 34679999999998532 1222 333332221 1134789
Q ss_pred EEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhc
Q 014798 373 IAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQ 413 (418)
Q Consensus 373 IatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~ 413 (418)
|++||++..+++++++ ||...+.+ +.+ ++.+|++..+.
T Consensus 133 i~~t~~~~~l~~~l~s--R~~~~~~l-~~l~~~e~~~il~~~~~ 173 (305)
T TIGR00635 133 VGATTRAGMLTSPLRD--RFGIILRL-EFYTVEELAEIVSRSAG 173 (305)
T ss_pred EEecCCccccCHHHHh--hcceEEEe-CCCCHHHHHHHHHHHHH
Confidence 9999999999999998 99888888 555 88888887664
No 50
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.60 E-value=6.7e-15 Score=162.21 Aligned_cols=162 Identities=23% Similarity=0.338 Sum_probs=120.0
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc----------CCCeeeee
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSIS 296 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~vs 296 (418)
.=.++.++|.++..+++.+++..- .+.++||+||||||||++|+++|... +..++.++
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r~------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 345778999998888777765541 12478999999999999999999864 45566666
Q ss_pred hhhHH--HHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 014798 297 GSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIA 374 (418)
Q Consensus 297 ~sefv--e~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIa 374 (418)
...+. ..|.|..+.+++.+|..+.+..++||||||||.+...+.. .++..+..+.+..++ .+..+.+|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~--~~g~~d~~nlLkp~L-------~~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--SGGQVDAANLIKPLL-------SSGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC--CCcHHHHHHHHHHHH-------hCCCeEEEe
Confidence 66655 4577888899999999998888899999999999765422 112222223333333 245699999
Q ss_pred EeCCCC-----CcchhhhCCCccceEEEecCch---HHHHHHHHhhc
Q 014798 375 ATNRAD-----ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQ 413 (418)
Q Consensus 375 tTN~~~-----~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~ 413 (418)
+|+.++ ..|++|.| ||+ .|.+ +.| ++.+||+.+..
T Consensus 321 ATt~~E~~~~~~~D~AL~r--RFq-~I~v-~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 321 STTYQEFSNIFEKDRALAR--RFQ-KIDI-TEPSIEETVQIINGLKP 363 (758)
T ss_pred cCChHHHHHHhhccHHHHh--hCc-EEEe-CCCCHHHHHHHHHHHHH
Confidence 999765 57999999 996 6889 777 88999987654
No 51
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=8.8e-15 Score=154.43 Aligned_cols=160 Identities=48% Similarity=0.773 Sum_probs=142.3
Q ss_pred cCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEc
Q 014798 251 KKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVD 330 (418)
Q Consensus 251 ~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfID 330 (418)
..+..+..++..+|++++++||||||||++++++|.+ +..++.+++.+...++.+......+.+|..+...+|+++++|
T Consensus 5 ~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d 83 (494)
T COG0464 5 KEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFID 83 (494)
T ss_pred cCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeec
Confidence 4566778889999999999999999999999999999 666688999999999999999999999999999999999999
Q ss_pred CCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHH
Q 014798 331 EIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWF 407 (418)
Q Consensus 331 EIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~I 407 (418)
|+|.+.+.+.. ...........+++..||+..... +++++.+|++..+|+++++||||++.+.+ ..| .|.+|
T Consensus 84 ~~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ei 158 (494)
T COG0464 84 EIDALAPKRSS---DQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEV-NLPDEAGRLEI 158 (494)
T ss_pred hhhhcccCccc---cccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeec-CCCCHHHHHHH
Confidence 99999998876 234455678899999999988444 88999999999999999999999999999 888 67899
Q ss_pred HHHhhccCC
Q 014798 408 LKTHSQYKD 416 (418)
Q Consensus 408 L~~~l~~k~ 416 (418)
++.|.+..+
T Consensus 159 ~~~~~~~~~ 167 (494)
T COG0464 159 LQIHTRLMF 167 (494)
T ss_pred HHHHHhcCC
Confidence 999886543
No 52
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.58 E-value=1.4e-14 Score=143.75 Aligned_cols=159 Identities=21% Similarity=0.340 Sum_probs=110.6
Q ss_pred cccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehh
Q 014798 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (418)
Q Consensus 219 ~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~s 298 (418)
-+|.+++.+.+|+|++|.+++++.+.+.+.. ...|..+||+||||+|||++|+++|++.+.+++.++++
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~ 77 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccC
Confidence 4688899999999999999999988887762 12345677799999999999999999999999999987
Q ss_pred hHHHHhhhcchhHHHHHHHHHH-hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 299 EFVEMFVGVGASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 299 efve~~vg~~~~~vr~lF~~A~-~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
+ . . +..-...+.+...... ...+.+|+|||+|.+.. .+.+..+..+ ++.. ..++.+|++||
T Consensus 78 ~-~-~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~~L~~~---le~~--~~~~~~Ilt~n 139 (316)
T PHA02544 78 D-C-R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL----------ADAQRHLRSF---MEAY--SKNCSFIITAN 139 (316)
T ss_pred c-c-c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC----------HHHHHHHHHH---HHhc--CCCceEEEEcC
Confidence 6 1 1 1111111222111111 13578999999998731 1223344444 4432 24568889999
Q ss_pred CCCCcchhhhCCCccceEEEecCch---HHHHHHHH
Q 014798 378 RADILDSALLRPGRFDRQVKHVSLS---LMLWFLKT 410 (418)
Q Consensus 378 ~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~ 410 (418)
.++.+++++++ ||. .+.+ +.| ++.++++.
T Consensus 140 ~~~~l~~~l~s--R~~-~i~~-~~p~~~~~~~il~~ 171 (316)
T PHA02544 140 NKNGIIEPLRS--RCR-VIDF-GVPTKEEQIEMMKQ 171 (316)
T ss_pred ChhhchHHHHh--hce-EEEe-CCCCHHHHHHHHHH
Confidence 99999999998 885 5677 566 66666554
No 53
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=9.9e-15 Score=156.04 Aligned_cols=163 Identities=29% Similarity=0.447 Sum_probs=123.4
Q ss_pred ccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH--------
Q 014798 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-------- 302 (418)
Q Consensus 231 ~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve-------- 302 (418)
.|..|++++|+++.|.+.-.+... .+.. .-++|+||||+|||+|+++||+.++..|+.++..-..+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~---~~kG---pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTK---KLKG---PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhc---cCCC---cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 578999999998888665433222 1111 13889999999999999999999999999998664432
Q ss_pred -HhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcC-----CCC--------CC
Q 014798 303 -MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FEG--------NT 368 (418)
Q Consensus 303 -~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg-----~~~--------~~ 368 (418)
.|+|....++-+-..+|....| +++|||||.++.+-. +++ ...||+-+|- |.. -+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~r-----GDP-----aSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFR-----GDP-----ASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCC-----CCh-----HHHHHhhcCHhhcCchhhccccCccchh
Confidence 4899999999999999988888 888999999976421 122 2345555442 111 13
Q ss_pred CeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhhc
Q 014798 369 GIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 369 ~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~ 413 (418)
+|++|+|+|..+.++.+|+. |+. .|.++.+- ++.+|-+.|+=
T Consensus 466 ~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred heEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhcc
Confidence 69999999999999999999 774 56665666 99999999873
No 54
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.56 E-value=1.7e-14 Score=161.45 Aligned_cols=162 Identities=21% Similarity=0.346 Sum_probs=119.3
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc----------CCCeeee
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~v 295 (418)
.+-.+++++|.+...+.+ ++-|.... ..+++|+||||||||++|+++|.++ +.+++.+
T Consensus 173 r~~~l~~vigr~~ei~~~---i~iL~r~~---------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRT---IQVLQRRT---------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred hcCCCCcCCCCHHHHHHH---HHHHhcCC---------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 455789999998864444 44433332 1369999999999999999999987 7789999
Q ss_pred ehhhHH--HHhhhcchhHHHHHHHHHHh-CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 014798 296 SGSEFV--EMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (418)
Q Consensus 296 s~sefv--e~~vg~~~~~vr~lF~~A~~-~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViV 372 (418)
+...++ .+|.|..+.+++.+|+.+.. ..++|+||||+|.+....... ++ ...... |...+ .+..+.+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~--~~-~d~~~~---lkp~l----~~g~l~~ 310 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKAD--GA-MDAGNM---LKPAL----ARGELHC 310 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCc--cc-hhHHHH---hcchh----hcCCCeE
Confidence 888876 45778888999999988644 568999999999997654321 11 122222 22222 3567999
Q ss_pred EEEeCCCC-----CcchhhhCCCccceEEEecCch---HHHHHHHHhhc
Q 014798 373 IAATNRAD-----ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQ 413 (418)
Q Consensus 373 IatTN~~~-----~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~ 413 (418)
|+||+..+ .+|+|+.| ||+. |.+ +.| ++.+||+.+.+
T Consensus 311 IgaTt~~e~r~~~~~d~al~r--Rf~~-i~v-~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALER--RFQK-VFV-AEPSVEDTIAILRGLKE 355 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHh--hCCE-EEe-CCCCHHHHHHHHHHHhh
Confidence 99999877 48999999 9984 678 777 88888876543
No 55
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.3e-14 Score=152.65 Aligned_cols=173 Identities=22% Similarity=0.222 Sum_probs=130.0
Q ss_pred ccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcC----CCeeeeehhhHHHHhhh
Q 014798 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISGSEFVEMFVG 306 (418)
Q Consensus 231 ~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~----~pfi~vs~sefve~~vg 306 (418)
.|++-..++|++..+ ..-.| ...+.++||+||+|||||.|+++++.++. +.+.+++|+.+...-..
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 455666666665544 22222 22345799999999999999999999884 45778999988776666
Q ss_pred cchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHh-cCCC-CCCCeEEEEEeCCCCCcch
Q 014798 307 VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM-DGFE-GNTGIIVIAATNRADILDS 384 (418)
Q Consensus 307 ~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~em-dg~~-~~~~ViVIatTN~~~~LD~ 384 (418)
...+.++.+|..|.+++|+||++|++|.+....+. .++.+....+.+..++.++ +.|. .+..+.+||+.+....|+|
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~-e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSN-ENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcc-cCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 66778899999999999999999999999873322 2334444445555555433 2222 3445789999999999999
Q ss_pred hhhCCCccceEEEecCch---HHHHHHHHhhccC
Q 014798 385 ALLRPGRFDRQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 385 ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~k 415 (418)
.|.+|++|+..+.+ +.| +|.+||+..++++
T Consensus 557 ~L~s~~~Fq~~~~L-~ap~~~~R~~IL~~~~s~~ 589 (952)
T KOG0735|consen 557 LLVSPLLFQIVIAL-PAPAVTRRKEILTTIFSKN 589 (952)
T ss_pred hhcCccceEEEEec-CCcchhHHHHHHHHHHHhh
Confidence 99999999999999 777 9999999887764
No 56
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.56 E-value=1.1e-14 Score=147.49 Aligned_cols=133 Identities=32% Similarity=0.485 Sum_probs=98.7
Q ss_pred CCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~ 303 (418)
.-.+-+++|++|++...-+-.-+-..+.... ..+++||||||||||+||+.||+..+.+|..+++..
T Consensus 17 rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~---------l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~---- 83 (436)
T COG2256 17 RLRPKSLDEVVGQEHLLGEGKPLRRAVEAGH---------LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT---- 83 (436)
T ss_pred HhCCCCHHHhcChHhhhCCCchHHHHHhcCC---------CceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc----
Confidence 3457799999999877644222222233222 126999999999999999999999999999998754
Q ss_pred hhhcchhHHHHHHHHHHhCC----CeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe--C
Q 014798 304 FVGVGASRVRDLFKKAKENA----PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT--N 377 (418)
Q Consensus 304 ~vg~~~~~vr~lF~~A~~~a----P~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatT--N 377 (418)
.+.+.+|++++.|++.. ..|+|||||+.+.+.. ...||-.++ +..+++|+|| |
T Consensus 84 ---~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q--------------QD~lLp~vE----~G~iilIGATTEN 142 (436)
T COG2256 84 ---SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ--------------QDALLPHVE----NGTIILIGATTEN 142 (436)
T ss_pred ---ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh--------------hhhhhhhhc----CCeEEEEeccCCC
Confidence 36678999999996533 4799999999996432 345666665 4567888777 4
Q ss_pred CCCCcchhhhCCCcc
Q 014798 378 RADILDSALLRPGRF 392 (418)
Q Consensus 378 ~~~~LD~ALlRpGRF 392 (418)
..-.|.+||++ |.
T Consensus 143 PsF~ln~ALlS--R~ 155 (436)
T COG2256 143 PSFELNPALLS--RA 155 (436)
T ss_pred CCeeecHHHhh--hh
Confidence 56689999999 65
No 57
>PRK04195 replication factor C large subunit; Provisional
Probab=99.55 E-value=4.7e-14 Score=148.84 Aligned_cols=163 Identities=23% Similarity=0.271 Sum_probs=115.4
Q ss_pred cccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehh
Q 014798 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (418)
Q Consensus 219 ~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~s 298 (418)
.+|.+++.+.+++|++|.+++++++.+++..+... .+++++||+||||||||++|+++|++++.+++.++++
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g--------~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnas 73 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKG--------KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNAS 73 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccc
Confidence 36888999999999999999999999998775532 2356899999999999999999999999999999988
Q ss_pred hHHHHhhhcchhHHHHHHHHHHh------CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 014798 299 EFVEMFVGVGASRVRDLFKKAKE------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (418)
Q Consensus 299 efve~~vg~~~~~vr~lF~~A~~------~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViV 372 (418)
+... ...++.+...+.. ..+.||+|||+|.+.... + ...++.|+..++. .+..+
T Consensus 74 d~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-------d---~~~~~aL~~~l~~----~~~~i 133 (482)
T PRK04195 74 DQRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-------D---RGGARAILELIKK----AKQPI 133 (482)
T ss_pred cccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc-------c---hhHHHHHHHHHHc----CCCCE
Confidence 7532 1223333332221 246799999999985421 1 1234455555542 23457
Q ss_pred EEEeCCCCCcch-hhhCCCccceEEEecCch---HHHHHHHHhhc
Q 014798 373 IAATNRADILDS-ALLRPGRFDRQVKHVSLS---LMLWFLKTHSQ 413 (418)
Q Consensus 373 IatTN~~~~LD~-ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~ 413 (418)
|+++|.+..+.+ .+++ |+ ..|.+ +.| +...+++..++
T Consensus 134 Ili~n~~~~~~~k~Lrs--r~-~~I~f-~~~~~~~i~~~L~~i~~ 174 (482)
T PRK04195 134 ILTANDPYDPSLRELRN--AC-LMIEF-KRLSTRSIVPVLKRICR 174 (482)
T ss_pred EEeccCccccchhhHhc--cc-eEEEe-cCCCHHHHHHHHHHHHH
Confidence 778888888877 5544 43 56788 555 66666666554
No 58
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=2.9e-14 Score=152.01 Aligned_cols=164 Identities=25% Similarity=0.424 Sum_probs=122.7
Q ss_pred cccccccCchHHHHHHHHHHHH--hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH---
Q 014798 228 VTFDDVAGVDEAKQDFMEVVEF--LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE--- 302 (418)
Q Consensus 228 ~~f~dV~G~de~k~eL~e~v~~--l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve--- 302 (418)
+==+|..|++++|+.+.|.+.- |+..- ..+-++|+||||+|||+++|+||..++..|++++...+.+
T Consensus 408 iLdeDHYgm~dVKeRILEfiAV~kLrgs~--------qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAe 479 (906)
T KOG2004|consen 408 ILDEDHYGMEDVKERILEFIAVGKLRGSV--------QGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAE 479 (906)
T ss_pred hhcccccchHHHHHHHHHHHHHHhhcccC--------CCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHh
Confidence 3346889999999998886654 44332 2335889999999999999999999999999998654432
Q ss_pred ------HhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC-----------
Q 014798 303 ------MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE----------- 365 (418)
Q Consensus 303 ------~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~----------- 365 (418)
.|+|....++-+.+.......| +++|||||.+++.- .+++ ...||+.+|-=.
T Consensus 480 IkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~-----qGDP-----asALLElLDPEQNanFlDHYLdV 548 (906)
T KOG2004|consen 480 IKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGH-----QGDP-----ASALLELLDPEQNANFLDHYLDV 548 (906)
T ss_pred hcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCC-----CCCh-----HHHHHHhcChhhccchhhhcccc
Confidence 3899888899899998888877 88899999998421 1222 223444444211
Q ss_pred --CCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhhc
Q 014798 366 --GNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 366 --~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~ 413 (418)
.-+.|++|||+|..+.|+++|+. |+. .|+++.+- ++.+|-+.|+-
T Consensus 549 p~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 549 PVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred ccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 11459999999999999999998 774 46665555 88889888873
No 59
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=7.6e-14 Score=149.80 Aligned_cols=165 Identities=22% Similarity=0.383 Sum_probs=133.5
Q ss_pred HHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhhcchhHHHHHHHHHHhCCC
Q 014798 245 EVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAP 324 (418)
Q Consensus 245 e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~~aP 324 (418)
+.+..+.-+..-...+.+....+||+|+||||||++++++|.++|.+++.++|.+++....+..+......|..|+...|
T Consensus 412 ~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~p 491 (953)
T KOG0736|consen 412 ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSP 491 (953)
T ss_pred HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCc
Confidence 45555555554444555556679999999999999999999999999999999999988888888899999999999999
Q ss_pred eEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch-
Q 014798 325 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-GNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS- 402 (418)
Q Consensus 325 ~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~-~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP- 402 (418)
+|||+-++|.++..+.. +.+-...+.+++++. .|.+. ...+++||++|+..+.+++.+++ -|-..|.+ +.|
T Consensus 492 avifl~~~dvl~id~dg---ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~-~~ls 564 (953)
T KOG0736|consen 492 AVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEV-PALS 564 (953)
T ss_pred eEEEEeccceeeecCCC---chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccC-CCCC
Confidence 99999999999854432 334445556666665 44444 45679999999999999999998 77778888 777
Q ss_pred --HHHHHHHHhhccCC
Q 014798 403 --LMLWFLKTHSQYKD 416 (418)
Q Consensus 403 --~R~~IL~~~l~~k~ 416 (418)
+|.+||+.++...+
T Consensus 565 e~qRl~iLq~y~~~~~ 580 (953)
T KOG0736|consen 565 EEQRLEILQWYLNHLP 580 (953)
T ss_pred HHHHHHHHHHHHhccc
Confidence 99999999886643
No 60
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.53 E-value=8.5e-14 Score=143.41 Aligned_cols=158 Identities=18% Similarity=0.275 Sum_probs=108.4
Q ss_pred ccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCe-------eeeehhhHH
Q 014798 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------FSISGSEFV 301 (418)
Q Consensus 229 ~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf-------i~vs~sefv 301 (418)
.|++|+|++.+++.+.+.+..-+. .+...+.+.|.++||+||||+|||++|+++|..+...- ..-+|..+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999999886432 23345666788999999999999999999998764421 000111111
Q ss_pred HH------h-----hhcchhHHHHHHHHHHhC----CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC
Q 014798 302 EM------F-----VGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG 366 (418)
Q Consensus 302 e~------~-----vg~~~~~vr~lF~~A~~~----aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~ 366 (418)
.. + ...+...+|++++.+... ...|+||||+|.+.. ...|.||+.|+..
T Consensus 81 ~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~--------------~aanaLLk~LEep-- 144 (394)
T PRK07940 81 AGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE--------------RAANALLKAVEEP-- 144 (394)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH--------------HHHHHHHHHhhcC--
Confidence 00 0 112345688888877542 346999999999942 2457788888743
Q ss_pred CCCeEEEEEeCCCCCcchhhhCCCccceEEEecCchHHHHHH
Q 014798 367 NTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLSLMLWFL 408 (418)
Q Consensus 367 ~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP~R~~IL 408 (418)
..++++|.+|+.++.|.|++++ |+ ..+.+ +.|...++.
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f-~~~~~~~i~ 182 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRS--RC-RHVAL-RTPSVEAVA 182 (394)
T ss_pred CCCCeEEEEECChHHChHHHHh--hC-eEEEC-CCCCHHHHH
Confidence 3446666666668999999998 77 57888 666333343
No 61
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.52 E-value=4.5e-14 Score=157.90 Aligned_cols=161 Identities=25% Similarity=0.365 Sum_probs=117.0
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc----------CCCeeee
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~v 295 (418)
.+-++++++|.++... .+++.+.... ..+++|+||||||||++|+.+|... +..++.+
T Consensus 182 r~~~ld~~iGr~~ei~---~~i~~l~r~~---------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 182 REGKIDPVLGRDDEIR---QMIDILLRRR---------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred cCCCCCcccCCHHHHH---HHHHHHhcCC---------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 4568899999998644 4444433332 2379999999999999999999876 2457778
Q ss_pred ehhhHH--HHhhhcchhHHHHHHHHHHh-CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 014798 296 SGSEFV--EMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (418)
Q Consensus 296 s~sefv--e~~vg~~~~~vr~lF~~A~~-~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViV 372 (418)
+.+.+. ..+.|+.+.+++++|+.++. ..++|+|||||+.+.+.++.. +..+ ..+-|+..+. +..+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~--~~~d----~~n~Lkp~l~----~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA--GQGD----AANLLKPALA----RGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc--cccc----HHHHhhHHhh----CCCeEE
Confidence 777765 35778888999999999865 468999999999998654321 1111 2233333333 456899
Q ss_pred EEEeCCCC-----CcchhhhCCCccceEEEecCch---HHHHHHHHhh
Q 014798 373 IAATNRAD-----ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHS 412 (418)
Q Consensus 373 IatTN~~~-----~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l 412 (418)
|+||+..+ .+|+||.| ||. .|.+ +.| ++.+||+.+.
T Consensus 320 IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v-~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTR--RFQ-VVKV-EEPDEETAIRMLRGLA 363 (852)
T ss_pred EEecCHHHHhhhhhccHHHHH--hCe-EEEe-CCCCHHHHHHHHHHHH
Confidence 99998643 48999999 995 7889 777 8888876544
No 62
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=8.5e-14 Score=145.73 Aligned_cols=152 Identities=22% Similarity=0.263 Sum_probs=106.7
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC-------ee
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FF 293 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi 293 (418)
+.+++.+.+|+||+|++.+...|...+..-+ .+..+||+||||||||++|+++|+.++.. +.
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~r-----------i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKSGK-----------IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 4567788999999999999998887766322 33468999999999999999999988652 11
Q ss_pred e-eehhhHHHH----------hhhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHH
Q 014798 294 S-ISGSEFVEM----------FVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (418)
Q Consensus 294 ~-vs~sefve~----------~vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL 358 (418)
. -+|.++... ....+...+|++.+.+.. ....|+||||+|.+. ....+.||
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------------~~A~NALL 142 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------------DQSFNALL 142 (484)
T ss_pred CCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------------HHHHHHHH
Confidence 0 112221111 011234566777665542 345699999999994 23678888
Q ss_pred HHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 359 ~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
.-++. ....+++|++|+.++.|.+++++ |+.+ +.+.++|
T Consensus 143 KtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq~-~~f~~ls 181 (484)
T PRK14956 143 KTLEE--PPAHIVFILATTEFHKIPETILS--RCQD-FIFKKVP 181 (484)
T ss_pred HHhhc--CCCceEEEeecCChhhccHHHHh--hhhe-eeecCCC
Confidence 88874 34568899999999999999999 8754 4452444
No 63
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=1.7e-13 Score=144.16 Aligned_cols=155 Identities=19% Similarity=0.351 Sum_probs=107.0
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCC-----------
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV----------- 290 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~----------- 290 (418)
.++..+.+|+|++|++.+++.+...+.. . +.|.++||+||||||||++|+++|.+++.
T Consensus 5 ~~kyRP~~~~divGq~~i~~~L~~~i~~---~--------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~ 73 (472)
T PRK14962 5 YRKYRPKTFSEVVGQDHVKKLIINALKK---N--------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE 73 (472)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHc---C--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc
Confidence 3566788999999999998877765552 2 23456899999999999999999998754
Q ss_pred -------------CeeeeehhhHHHHhhhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHH
Q 014798 291 -------------PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (418)
Q Consensus 291 -------------pfi~vs~sefve~~vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~ 353 (418)
.++.++++. ..+...+|++.+.+.. ....||||||+|.+.. ..
T Consensus 74 c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~--------------~a 133 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK--------------EA 133 (472)
T ss_pred cHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH--------------HH
Confidence 233333321 1234556766665542 2346999999999842 34
Q ss_pred HHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhh
Q 014798 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHS 412 (418)
Q Consensus 354 L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l 412 (418)
++.|+..++.. ...+++|++|+.++.+++++++ |+. .+.+.+++ +...+++..+
T Consensus 134 ~~~LLk~LE~p--~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~ 189 (472)
T PRK14962 134 FNALLKTLEEP--PSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVA 189 (472)
T ss_pred HHHHHHHHHhC--CCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHH
Confidence 57778877743 3457777777778899999998 774 57772333 5555555444
No 64
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.50 E-value=1.5e-13 Score=142.28 Aligned_cols=151 Identities=30% Similarity=0.445 Sum_probs=106.2
Q ss_pred cCCCCcccccccCchHHHHH---HHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhh
Q 014798 223 EPNTGVTFDDVAGVDEAKQD---FMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k~e---L~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~se 299 (418)
++..+-+|+|++|++..... +.++++ ... +.+++|+||||||||++|+++|+..+.+|+.+++..
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~---~~~---------~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIE---AGR---------LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHH---cCC---------CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 45567889999999988666 655553 211 236999999999999999999999999999998764
Q ss_pred HHHHhhhcchhHHHHHHHHHH----hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 014798 300 FVEMFVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (418)
Q Consensus 300 fve~~vg~~~~~vr~lF~~A~----~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIat 375 (418)
. +...++++++.+. .....||||||+|.+.. ...+.|+..++. ..+++|++
T Consensus 72 ~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------------~~q~~LL~~le~----~~iilI~a 126 (413)
T PRK13342 72 S-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------------AQQDALLPHVED----GTITLIGA 126 (413)
T ss_pred c-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------------HHHHHHHHHhhc----CcEEEEEe
Confidence 2 3345667776664 23568999999999842 123455655552 34666766
Q ss_pred eC--CCCCcchhhhCCCccceEEEecCch--HHHHHHHHhhc
Q 014798 376 TN--RADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 376 TN--~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~ 413 (418)
|+ ....+++++++ |+ ..+.+.+++ +..++++..+.
T Consensus 127 tt~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~ 165 (413)
T PRK13342 127 TTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALE 165 (413)
T ss_pred CCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHH
Confidence 53 34578999999 87 567773433 66666665543
No 65
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.49 E-value=1.4e-13 Score=153.64 Aligned_cols=158 Identities=22% Similarity=0.305 Sum_probs=118.4
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc----------CCCeeeee
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSIS 296 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~vs 296 (418)
.-.+++++|.++..+.+.+++..- .+++++|+||||||||++|+++|.+. +.+++.++
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r~------------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGRR------------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHccc------------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 446889999998888877765421 23479999999999999999999876 47899999
Q ss_pred hhhHH--HHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 014798 297 GSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIA 374 (418)
Q Consensus 297 ~sefv--e~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIa 374 (418)
.+.+. ..|.|+.+.+++.+|+.+....++||||||||.+....+. .+... ..+-|...+. +..+.+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~---~g~~~---~a~lLkp~l~----rg~l~~Ig 312 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA---EGAID---AANILKPALA----RGELQCIG 312 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC---CCccc---HHHHhHHHHh----CCCcEEEE
Confidence 98887 4677888899999999998888899999999999765432 11111 2222322332 45689999
Q ss_pred EeCCCC-----CcchhhhCCCccceEEEecCch---HHHHHHHH
Q 014798 375 ATNRAD-----ILDSALLRPGRFDRQVKHVSLS---LMLWFLKT 410 (418)
Q Consensus 375 tTN~~~-----~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~ 410 (418)
+|+..+ ..|+++.+ ||.. |.+ +.| +...|++.
T Consensus 313 aTt~~ey~~~ie~D~aL~r--Rf~~-I~v-~ep~~~e~~aILr~ 352 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALER--RFQP-VYV-GEPSVEETIEILFG 352 (821)
T ss_pred eCCHHHHHHHHhcCHHHHh--cceE-Eec-CCCCHHHHHHHHHH
Confidence 999654 47999999 9975 677 556 66677664
No 66
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.49 E-value=1.4e-13 Score=154.24 Aligned_cols=163 Identities=21% Similarity=0.327 Sum_probs=118.2
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc----------CCCeeee
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~v 295 (418)
.+-.++.++|.++..+.+.++ |.... ..+++|+||||||||++++++|... +.+++.+
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~---l~r~~---------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQV---LSRRT---------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHH---HhcCC---------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 445788999999865544444 33322 2368999999999999999999875 6788888
Q ss_pred ehhhHH--HHhhhcchhHHHHHHHHHHh-CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 014798 296 SGSEFV--EMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (418)
Q Consensus 296 s~sefv--e~~vg~~~~~vr~lF~~A~~-~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViV 372 (418)
+...++ ..|.|..+.+++.+|+.+.. ..++||||||||.+...... .+. ....+.|...+ .+..+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~---~~~---~d~~~~Lk~~l----~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA---EGA---MDAGNMLKPAL----ARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC---cch---hHHHHHhchhh----hcCceEE
Confidence 888776 45788888899999998865 45899999999999754321 111 11223333222 3456899
Q ss_pred EEEeCCCC-----CcchhhhCCCccceEEEecCch---HHHHHHHHhhcc
Q 014798 373 IAATNRAD-----ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 373 IatTN~~~-----~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~ 414 (418)
|++|+..+ .+|+++.| ||+. |.+ +.| ++.+||+.+.+.
T Consensus 306 IgaTt~~e~r~~~~~d~al~r--Rf~~-i~v-~~p~~~~~~~iL~~~~~~ 351 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALER--RFQP-VFV-DEPTVEDTISILRGLKER 351 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHh--cCCE-EEe-CCCCHHHHHHHHHHHHHH
Confidence 99999764 47999999 9974 778 777 888888865443
No 67
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.49 E-value=1.4e-13 Score=152.56 Aligned_cols=162 Identities=22% Similarity=0.381 Sum_probs=116.6
Q ss_pred ccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH--------
Q 014798 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-------- 302 (418)
Q Consensus 231 ~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve-------- 302 (418)
+|+.|++++|+.+.+.+........ .....++|+||||||||++++++|+.++.+|+.++.....+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~------~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNK------IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhccc------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 4699999999999887775433211 11235999999999999999999999999999888665322
Q ss_pred -HhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcC-----CC--------CCC
Q 014798 303 -MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FE--------GNT 368 (418)
Q Consensus 303 -~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg-----~~--------~~~ 368 (418)
.|+|....++.+.+..+....| ||+|||||.+.+.... + ....|+..+|. |. .-+
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g-----~-----~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG-----D-----PASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC-----C-----HHHHHHHHhccccEEEEecccccccccCC
Confidence 3566666666666766654444 8999999999754211 1 23455555552 11 125
Q ss_pred CeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhhc
Q 014798 369 GIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 369 ~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~ 413 (418)
++++|+|+|.. .|+++|++ ||+ .|.+.+++ +..+|.+.|+-
T Consensus 465 ~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 465 DVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred ceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 79999999987 59999999 996 56664666 88899988884
No 68
>PLN03025 replication factor C subunit; Provisional
Probab=99.49 E-value=2.2e-13 Score=136.34 Aligned_cols=154 Identities=24% Similarity=0.266 Sum_probs=103.5
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcC-----CCeeee
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSI 295 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~-----~pfi~v 295 (418)
|.+++.+.+|+|++|++++.+.++.++..-. .| ++||+||||||||++|+++|+++. ..++.+
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~-----------~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARDGN-----------MP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhcCC-----------Cc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 6788899999999999999988877655211 12 599999999999999999999872 235566
Q ss_pred ehhhHHHHhhhcchhHHHHHHHHHH-------hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 014798 296 SGSEFVEMFVGVGASRVRDLFKKAK-------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (418)
Q Consensus 296 s~sefve~~vg~~~~~vr~lF~~A~-------~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~ 368 (418)
+.++.. +...+++...... ...+.||+|||+|.+.. . ..+.|+..|+.+. .
T Consensus 71 n~sd~~------~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~-----------~---aq~aL~~~lE~~~--~ 128 (319)
T PLN03025 71 NASDDR------GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS-----------G---AQQALRRTMEIYS--N 128 (319)
T ss_pred cccccc------cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH-----------H---HHHHHHHHHhccc--C
Confidence 665431 2223444433211 12357999999999842 2 2344555555333 2
Q ss_pred CeEEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhh
Q 014798 369 GIIVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHS 412 (418)
Q Consensus 369 ~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l 412 (418)
...+|.+||....+.+++++ |+ ..+.+ +.| +....++..+
T Consensus 129 ~t~~il~~n~~~~i~~~L~S--Rc-~~i~f-~~l~~~~l~~~L~~i~ 171 (319)
T PLN03025 129 TTRFALACNTSSKIIEPIQS--RC-AIVRF-SRLSDQEILGRLMKVV 171 (319)
T ss_pred CceEEEEeCCccccchhHHH--hh-hcccC-CCCCHHHHHHHHHHHH
Confidence 35677788888888899998 66 35777 444 5555555444
No 69
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=9.2e-14 Score=149.28 Aligned_cols=151 Identities=17% Similarity=0.233 Sum_probs=108.1
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC---------
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p--------- 291 (418)
..+++.+.+|+||+|++.+++.|.+.+..-+- +..+||+||+|||||++|+.+|+.+++.
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~~gRL-----------pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~ 74 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQQRL-----------HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT 74 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCC-----------ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC
Confidence 34567889999999999999998888774333 3468999999999999999999988651
Q ss_pred ---eeee-ehhhHHH----Hh------hhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHH
Q 014798 292 ---FFSI-SGSEFVE----MF------VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (418)
Q Consensus 292 ---fi~v-s~sefve----~~------vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~ 353 (418)
+-.+ +|..+.. .+ ...+...+|++.+.+.. ....|++|||+|.+. ...
T Consensus 75 ~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------------~~A 140 (700)
T PRK12323 75 AQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------------NHA 140 (700)
T ss_pred CCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------------HHH
Confidence 1111 1111110 01 01234567777776543 345799999999994 245
Q ss_pred HHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 354 L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
.|.||+.|+. ...++++|++||.++.|.+.+++ |+ ..+.+ ..+
T Consensus 141 aNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f-~~l 183 (700)
T PRK12323 141 FNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNL-KQM 183 (700)
T ss_pred HHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-Hhccc-CCC
Confidence 7889998884 34568999999999999999998 77 45656 444
No 70
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.49 E-value=4.9e-13 Score=133.14 Aligned_cols=165 Identities=20% Similarity=0.280 Sum_probs=107.1
Q ss_pred cccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcC-----CCee
Q 014798 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFF 293 (418)
Q Consensus 219 ~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~-----~pfi 293 (418)
.+|.+++.+.+|++++|.+++++.+.+.+.. +. ..+++|+||||||||++|+++|+++. .+++
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~---~~---------~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~ 70 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDS---PN---------LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFT 70 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhC---CC---------CceEEEECCCCCCHHHHHHHHHHHhcCcccccceE
Confidence 4688888999999999999999988876652 11 12599999999999999999999873 4578
Q ss_pred eeehhhHHHHhh-------------hc-------chhHHHHHHHHHHh-----CCCeEEEEcCCcccccccCCCCCCCCh
Q 014798 294 SISGSEFVEMFV-------------GV-------GASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGND 348 (418)
Q Consensus 294 ~vs~sefve~~v-------------g~-------~~~~vr~lF~~A~~-----~aP~IIfIDEIDal~~~r~~~~~~~~~ 348 (418)
+++++++..... +. ....++++...... ..+.+|+|||+|.+..
T Consensus 71 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~----------- 139 (337)
T PRK12402 71 EFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE----------- 139 (337)
T ss_pred EechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH-----------
Confidence 889887653210 10 11223333333222 2346999999998832
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhhcc
Q 014798 349 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQY 414 (418)
Q Consensus 349 e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~~ 414 (418)
..++. |...++... ....+|++++.+..+.+.+.+ |+ ..+.+.+++ +..++++..+++
T Consensus 140 ~~~~~---L~~~le~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~ 199 (337)
T PRK12402 140 DAQQA---LRRIMEQYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEA 199 (337)
T ss_pred HHHHH---HHHHHHhcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 22333 444444332 234566667666777778877 65 356662333 667777766543
No 71
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.49 E-value=1.5e-13 Score=133.94 Aligned_cols=155 Identities=28% Similarity=0.406 Sum_probs=113.4
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhh
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~v 305 (418)
.+-+|+|.+|++++|+.+.-++..-+... ...-++||+||||.|||+||..+|+|+++++-..++.-+.
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le---- 89 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE---- 89 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc----
Confidence 46789999999999999998888744433 2345899999999999999999999999999998877642
Q ss_pred hcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC--------C--------CC
Q 014798 306 GVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--------N--------TG 369 (418)
Q Consensus 306 g~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~--------~--------~~ 369 (418)
.+..+-.++.....+ +|+|||||+++.+. .+.++ .-.|+.|.- + ..
T Consensus 90 --K~gDlaaiLt~Le~~--DVLFIDEIHrl~~~-----------vEE~L---YpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 90 --KPGDLAAILTNLEEG--DVLFIDEIHRLSPA-----------VEEVL---YPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred --ChhhHHHHHhcCCcC--CeEEEehhhhcChh-----------HHHHh---hhhhhheeEEEEEccCCccceEeccCCC
Confidence 233344444444333 79999999999643 23343 334444421 1 24
Q ss_pred eEEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhh
Q 014798 370 IIVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHS 412 (418)
Q Consensus 370 ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l 412 (418)
+.+|+||.+...|...|+. ||.....+ ++= +-.+|++...
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rl-efY~~~eL~~Iv~r~a 194 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRL-EFYTVEELEEIVKRSA 194 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeee-ecCCHHHHHHHHHHHH
Confidence 8899999999999999998 99876655 332 6677776544
No 72
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.49 E-value=7.9e-14 Score=143.45 Aligned_cols=88 Identities=32% Similarity=0.519 Sum_probs=66.4
Q ss_pred cccCchHHHHHHHHHHHH-hcCchhhhhcC-CccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH-Hhhh-c
Q 014798 232 DVAGVDEAKQDFMEVVEF-LKKPERFTAIG-ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVG-V 307 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~-l~~p~~~~~lG-~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve-~~vg-~ 307 (418)
-|+|++++|+.+...+.. ++.......+. -..|+++||+||||||||++|+++|+.++.||+.++++++.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 488999999999877664 33332222222 224689999999999999999999999999999999998875 5777 3
Q ss_pred chhHHHHHHHHH
Q 014798 308 GASRVRDLFKKA 319 (418)
Q Consensus 308 ~~~~vr~lF~~A 319 (418)
.+..++++|+.|
T Consensus 93 vE~i~r~l~e~A 104 (441)
T TIGR00390 93 VESMVRDLTDAA 104 (441)
T ss_pred HHHHHHHHHHHH
Confidence 456666666555
No 73
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.48 E-value=2e-13 Score=141.43 Aligned_cols=130 Identities=28% Similarity=0.433 Sum_probs=87.4
Q ss_pred ccCchHHHHHHHHHHHH----hcCchhhhhcCCc-cCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH-Hhhh
Q 014798 233 VAGVDEAKQDFMEVVEF----LKKPERFTAIGAR-IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVG 306 (418)
Q Consensus 233 V~G~de~k~eL~e~v~~----l~~p~~~~~lG~~-~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve-~~vg 306 (418)
|+|++++++.+...+.. +........ ... ...++||+||||||||++|+++|..++.||+.++++.+.+ .|+|
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~-~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDD-DVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhccccccc-ccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 89999999999776632 221110000 111 2357999999999999999999999999999999998764 4777
Q ss_pred cchhH-HHHHHHHH----HhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcC
Q 014798 307 VGASR-VRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 363 (418)
Q Consensus 307 ~~~~~-vr~lF~~A----~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg 363 (418)
..... +..++..+ ....++||||||||.+.+++.......+-..+.+.+.||..|++
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg 213 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEG 213 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhc
Confidence 65433 34444332 23467899999999998774322212222234466677777765
No 74
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.47 E-value=8.4e-13 Score=112.55 Aligned_cols=121 Identities=40% Similarity=0.615 Sum_probs=82.4
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHhhhcchhH---HHHHHHHHHhCCCeEEEEcCCcccccc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGASR---VRDLFKKAKENAPCIVFVDEIDAVGRQ 338 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~vg~~~~~---vr~lF~~A~~~aP~IIfIDEIDal~~~ 338 (418)
++++++||||||||++++.++.++ +.+++++++.++........... ....+..+....+.+|++||++.+..
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~- 98 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR- 98 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH-
Confidence 479999999999999999999998 89999999988765433222111 12223344456688999999998721
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCC-CCCCCeEEEEEeCCCC--CcchhhhCCCccceEEEe
Q 014798 339 RGTGIGGGNDEREQTLNQLLTEMDGF-EGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 339 r~~~~~~~~~e~~~~L~~LL~emdg~-~~~~~ViVIatTN~~~--~LD~ALlRpGRFdr~I~v 398 (418)
.....+.+++...... ....++.+|+++|... .+++.+.+ ||+..+.+
T Consensus 99 ----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~ 149 (151)
T cd00009 99 ----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVI 149 (151)
T ss_pred ----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeec
Confidence 1122333333332211 1135788999999777 67888887 99877776
No 75
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.47 E-value=1.1e-13 Score=142.35 Aligned_cols=176 Identities=29% Similarity=0.431 Sum_probs=125.2
Q ss_pred cccCchHHHHHHHHHHHH-hcCchhhhhcCC-ccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH-Hhhhc-
Q 014798 232 DVAGVDEAKQDFMEVVEF-LKKPERFTAIGA-RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVGV- 307 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~-~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve-~~vg~- 307 (418)
.|+|++++|+.+...+.. ++.......+.. ..|+++||+||||||||++|+++|+.++.||+.+++++|.+ .|+|.
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 389999999999887743 332221111111 13678999999999999999999999999999999999987 58883
Q ss_pred chhHHHHHHHHHH-------------------------------------------------------------------
Q 014798 308 GASRVRDLFKKAK------------------------------------------------------------------- 320 (418)
Q Consensus 308 ~~~~vr~lF~~A~------------------------------------------------------------------- 320 (418)
.+..++++|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4567777777661
Q ss_pred ---h--------------------------------------------------------------------CCCeEEEE
Q 014798 321 ---E--------------------------------------------------------------------NAPCIVFV 329 (418)
Q Consensus 321 ---~--------------------------------------------------------------------~aP~IIfI 329 (418)
. ..-.||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 0 12359999
Q ss_pred cCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC--------CCCCeEEEEEeC----CCCCcchhhhCCCccceEEE
Q 014798 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIAATN----RADILDSALLRPGRFDRQVK 397 (418)
Q Consensus 330 DEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~--------~~~~ViVIatTN----~~~~LD~ALlRpGRFdr~I~ 397 (418)
||||+++.+.+. ++.+-.++-+...||..++|-. ..+++++||+-- .|++|-|.|.- ||...+.
T Consensus 256 DEiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~ 331 (443)
T PRK05201 256 DEIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVE 331 (443)
T ss_pred EcchhhcccCCC--CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEE
Confidence 999999876533 2334445567788888888732 235688887653 56777788875 9998888
Q ss_pred ecCchHHHHHHHHhh
Q 014798 398 HVSLSLMLWFLKTHS 412 (418)
Q Consensus 398 v~~lP~R~~IL~~~l 412 (418)
+ ...++.++.++..
T Consensus 332 L-~~L~~~dL~~ILt 345 (443)
T PRK05201 332 L-DALTEEDFVRILT 345 (443)
T ss_pred C-CCCCHHHHHHHhc
Confidence 8 5555555555443
No 76
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.46 E-value=3.6e-13 Score=140.88 Aligned_cols=168 Identities=17% Similarity=0.272 Sum_probs=104.1
Q ss_pred CCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-----CCCeeeeehhh
Q 014798 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSE 299 (418)
Q Consensus 225 ~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~vs~se 299 (418)
.+..+|++.+..+........+......+. ...++++||||||||||+|++++|.++ +..++++++.+
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~~-------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCcC-------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 467899995532322222222222222221 122469999999999999999999887 56799999999
Q ss_pred HHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014798 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (418)
Q Consensus 300 fve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~ 379 (418)
|...+.........+-|..... .+++|+|||+|.+..+ +..++.+..++..+. .+...++|+++..|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~---------~~~~~~l~~~~n~l~---~~~~~iiits~~~p 255 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGK---------ERTQEEFFHTFNALH---EAGKQIVLTSDRPP 255 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCC---------HHHHHHHHHHHHHHH---HCCCcEEEECCCCH
Confidence 9877654432222223333222 4679999999998532 122333444443332 22234555555555
Q ss_pred CC---cchhhhCCCccce--EEEecCch---HHHHHHHHhhccC
Q 014798 380 DI---LDSALLRPGRFDR--QVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 380 ~~---LD~ALlRpGRFdr--~I~v~~lP---~R~~IL~~~l~~k 415 (418)
.. +++.+.+ ||.. .+.+ ..| +|.+|++..+...
T Consensus 256 ~~l~~l~~~l~S--Rl~~gl~v~i-~~pd~~~r~~il~~~~~~~ 296 (450)
T PRK00149 256 KELPGLEERLRS--RFEWGLTVDI-EPPDLETRIAILKKKAEEE 296 (450)
T ss_pred HHHHHHHHHHHh--HhcCCeeEEe-cCCCHHHHHHHHHHHHHHc
Confidence 54 6788888 8864 6777 777 9999999887653
No 77
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.46 E-value=1.4e-12 Score=127.38 Aligned_cols=131 Identities=26% Similarity=0.326 Sum_probs=84.8
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhh------HHHHhhhcchhHHHH--------------------HHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE------FVEMFVGVGASRVRD--------------------LFKKA 319 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~se------fve~~vg~~~~~vr~--------------------lF~~A 319 (418)
.++|+||||||||++|+++|..++.+++.++|.+ ++..+.+.....+.+ .+..|
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A 102 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLA 102 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHH
Confidence 6999999999999999999999999999997754 322222211111111 11222
Q ss_pred HhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHh----cCC-------CCCCCeEEEEEeCCCC-----Ccc
Q 014798 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM----DGF-------EGNTGIIVIAATNRAD-----ILD 383 (418)
Q Consensus 320 ~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~em----dg~-------~~~~~ViVIatTN~~~-----~LD 383 (418)
... ..+++|||||.+. .+.+..|..+|.+- .+. ..+.++.||+|+|... .++
T Consensus 103 ~~~-g~~lllDEi~r~~-----------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~ 170 (262)
T TIGR02640 103 VRE-GFTLVYDEFTRSK-----------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQ 170 (262)
T ss_pred HHc-CCEEEEcchhhCC-----------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceeccc
Confidence 222 3599999999973 23344444444321 000 0224678999999763 578
Q ss_pred hhhhCCCccceEEEecCch---HHHHHHHHhh
Q 014798 384 SALLRPGRFDRQVKHVSLS---LMLWFLKTHS 412 (418)
Q Consensus 384 ~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l 412 (418)
++|++ || ..+.+ ++| +-.+|++.++
T Consensus 171 ~aL~~--R~-~~i~i-~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 171 DALLD--RL-ITIFM-DYPDIDTETAILRAKT 198 (262)
T ss_pred HHHHh--hc-EEEEC-CCCCHHHHHHHHHHhh
Confidence 99999 88 57888 888 5556776654
No 78
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.45 E-value=6.6e-13 Score=146.55 Aligned_cols=162 Identities=21% Similarity=0.321 Sum_probs=109.8
Q ss_pred cccCchHHHHHHHHHHHHhcCchhhhhcCCccC-CCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH-----Hhh
Q 014798 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-----MFV 305 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p-~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve-----~~v 305 (418)
.|+|++++++.+.+.+...+..-. ....| ..+||+||||||||.+|+++|..++.+|+.++++++.+ .++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~----~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG----HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc----CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 489999999999998876432110 01123 35899999999999999999999999999999999854 344
Q ss_pred hcchhH-----HHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC---------CCCCeE
Q 014798 306 GVGASR-----VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------GNTGII 371 (418)
Q Consensus 306 g~~~~~-----vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~---------~~~~Vi 371 (418)
|..... -..+.+..+.+..+||||||||.+.+ .+.+.|+..||.-. .-.+++
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~--------------~v~~~LLq~ld~G~ltd~~g~~vd~rn~i 600 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP--------------DVFNLLLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH--------------HHHHHHHHHHhcCeeecCCCceecCCCcE
Confidence 422111 11233334556668999999999842 24555666555321 113688
Q ss_pred EEEEeCCC-------------------------CCcchhhhCCCccceEEEecCch--HHHHHHHHhhc
Q 014798 372 VIAATNRA-------------------------DILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 372 VIatTN~~-------------------------~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~ 413 (418)
+|+|||.- ..+.|.++. |+|..+.+.++. +..+|+..+++
T Consensus 601 iI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred EEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 99999932 124466666 999999885555 66777766654
No 79
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=5.1e-13 Score=145.34 Aligned_cols=148 Identities=18% Similarity=0.230 Sum_probs=104.8
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC-------ee
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FF 293 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi 293 (418)
..+++.+.+|+||+|++.+++.|.+.++.- +.+..+||+||+|||||++|+++|+.+++. +-
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~g-----------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG 74 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDGG-----------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG 74 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHhcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence 346678899999999999999888876522 234468999999999999999999988642 10
Q ss_pred e-eehhhHHHH----h------hhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHH
Q 014798 294 S-ISGSEFVEM----F------VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (418)
Q Consensus 294 ~-vs~sefve~----~------vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL 358 (418)
. -+|..+.+. + ...+...+|++++.+.. ....|+||||+|.+. ....|.||
T Consensus 75 ~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------------~~A~NALL 140 (830)
T PRK07003 75 VCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------------NHAFNAML 140 (830)
T ss_pred ccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCC--------------HHHHHHHH
Confidence 0 011121110 0 11234567788877643 235799999999984 23567788
Q ss_pred HHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEe
Q 014798 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 359 ~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v 398 (418)
+.|+.. ..++++|++||.++.|.+.+++ |+ ..+.+
T Consensus 141 KtLEEP--P~~v~FILaTtd~~KIp~TIrS--RC-q~f~F 175 (830)
T PRK07003 141 KTLEEP--PPHVKFILATTDPQKIPVTVLS--RC-LQFNL 175 (830)
T ss_pred HHHHhc--CCCeEEEEEECChhhccchhhh--he-EEEec
Confidence 888743 3468899999999999999998 77 45556
No 80
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.45 E-value=6.3e-13 Score=137.13 Aligned_cols=166 Identities=20% Similarity=0.326 Sum_probs=101.9
Q ss_pred CCCccccc-ccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-----CCCeeeeehh
Q 014798 225 NTGVTFDD-VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGS 298 (418)
Q Consensus 225 ~~~~~f~d-V~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~vs~s 298 (418)
.+..+|++ ++|.+. ......+......+. ....+++||||+|||||+|++++++++ +..++++++.
T Consensus 104 ~~~~tfd~fi~g~~n-~~a~~~~~~~~~~~~-------~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 104 NPKYTFDNFVVGKSN-RLAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CCCCcccccccCCcH-HHHHHHHHHHHhCcC-------ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 35689999 445432 222222222222221 123468999999999999999999877 6789999999
Q ss_pred hHHHHhhhcch-hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 299 EFVEMFVGVGA-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 299 efve~~vg~~~-~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
+|...+...-. .....+.+..+ .+++|+|||+|.+..++ ..+..+..++..+. .+...+||+++.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~---------~~~~~l~~~~n~~~---~~~~~iiits~~ 241 (405)
T TIGR00362 176 KFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE---------RTQEEFFHTFNALH---ENGKQIVLTSDR 241 (405)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH---------HHHHHHHHHHHHHH---HCCCCEEEecCC
Confidence 98776543221 12222222222 35799999999985321 22333444444432 223345555555
Q ss_pred CCCC---cchhhhCCCccce--EEEecCch---HHHHHHHHhhccC
Q 014798 378 RADI---LDSALLRPGRFDR--QVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 378 ~~~~---LD~ALlRpGRFdr--~I~v~~lP---~R~~IL~~~l~~k 415 (418)
.|.. +++.+.+ ||.. .+.+ +.| +|.+|++..++..
T Consensus 242 ~p~~l~~l~~~l~S--Rl~~g~~v~i-~~pd~~~r~~il~~~~~~~ 284 (405)
T TIGR00362 242 PPKELPGLEERLRS--RFEWGLVVDI-EPPDLETRLAILQKKAEEE 284 (405)
T ss_pred CHHHHhhhhhhhhh--hccCCeEEEe-CCCCHHHHHHHHHHHHHHc
Confidence 5554 5677887 8864 5777 677 8999999887654
No 81
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=8.5e-13 Score=134.60 Aligned_cols=161 Identities=21% Similarity=0.241 Sum_probs=106.5
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCee--------
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF-------- 293 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi-------- 293 (418)
.+++.+.+|+||+|++.+++.+...+..- +.|..+||+||||||||++|+++|+++....-
T Consensus 7 ~~kyrP~~~~~iiGq~~~~~~l~~~~~~~-----------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~ 75 (363)
T PRK14961 7 ARKWRPQYFRDIIGQKHIVTAISNGLSLG-----------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRK 75 (363)
T ss_pred HHHhCCCchhhccChHHHHHHHHHHHHcC-----------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 45677899999999999999888776532 23446899999999999999999998853211
Q ss_pred eeehhhHHHH----h------hhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHH
Q 014798 294 SISGSEFVEM----F------VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (418)
Q Consensus 294 ~vs~sefve~----~------vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~ 359 (418)
..+|.++... + ...+...++++.+.+.. ....|++|||+|.+. ....+.||.
T Consensus 76 c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------------~~a~naLLk 141 (363)
T PRK14961 76 CIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------------RHSFNALLK 141 (363)
T ss_pred CHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------HHHHHHHHH
Confidence 0112222110 0 01233456666665532 234699999999983 234567888
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhh
Q 014798 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHS 412 (418)
Q Consensus 360 emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l 412 (418)
.++.. ...+.+|++|+.++.+.+++++ |+ ..+.+.+++ +..++++..+
T Consensus 142 ~lEe~--~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~ 191 (363)
T PRK14961 142 TLEEP--PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYIL 191 (363)
T ss_pred HHhcC--CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHH
Confidence 77743 3456777788888889999887 76 456773332 5555665544
No 82
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.43 E-value=1.3e-12 Score=139.60 Aligned_cols=166 Identities=22% Similarity=0.305 Sum_probs=104.0
Q ss_pred ccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc----------C
Q 014798 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------G 289 (418)
Q Consensus 220 ~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el----------~ 289 (418)
-+.++..+.+|++++|+++..+.+...+ .. ..+.++||+||||||||++|++++.++ +
T Consensus 54 ~~~~~~rp~~f~~iiGqs~~i~~l~~al---~~---------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~ 121 (531)
T TIGR02902 54 PLSEKTRPKSFDEIIGQEEGIKALKAAL---CG---------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEG 121 (531)
T ss_pred hHHHhhCcCCHHHeeCcHHHHHHHHHHH---hC---------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCC
Confidence 3455678899999999999988887542 11 124479999999999999999997642 4
Q ss_pred CCeeeeehhhH-------HHHhhhcch----------------hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCC
Q 014798 290 VPFFSISGSEF-------VEMFVGVGA----------------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGG 346 (418)
Q Consensus 290 ~pfi~vs~sef-------ve~~vg~~~----------------~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~ 346 (418)
.+|+.++|+.. .+...+... ..-...+.+| ...+|||||||.+..
T Consensus 122 ~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L~~--------- 189 (531)
T TIGR02902 122 AAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGELHP--------- 189 (531)
T ss_pred CCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhCCH---------
Confidence 68999998631 111111100 0001122222 236999999999843
Q ss_pred ChHHHHHHHHHHHHh----c-----CC--------------CCCCCeEEE-EEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 347 NDEREQTLNQLLTEM----D-----GF--------------EGNTGIIVI-AATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 347 ~~e~~~~L~~LL~em----d-----g~--------------~~~~~ViVI-atTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
..+..+..++++- + +. ....++.+| +|||.++.+++++++ |+. .+.++++.
T Consensus 190 --~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~ 264 (531)
T TIGR02902 190 --VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLL 264 (531)
T ss_pred --HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCC
Confidence 2233333333320 0 00 001234444 556689999999999 875 46664555
Q ss_pred --HHHHHHHHhhcc
Q 014798 403 --LMLWFLKTHSQY 414 (418)
Q Consensus 403 --~R~~IL~~~l~~ 414 (418)
++.+|++..+++
T Consensus 265 ~eei~~Il~~~a~k 278 (531)
T TIGR02902 265 DEEIKEIAKNAAEK 278 (531)
T ss_pred HHHHHHHHHHHHHH
Confidence 888898887764
No 83
>PRK06893 DNA replication initiation factor; Validated
Probab=99.42 E-value=1.9e-12 Score=123.93 Aligned_cols=159 Identities=14% Similarity=0.117 Sum_probs=97.3
Q ss_pred cCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhh
Q 014798 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~se 299 (418)
...+..+|+++++.+... .+......... .....++||||||||||+|++|+|+++ +....+++..+
T Consensus 8 ~~~~~~~fd~f~~~~~~~-~~~~~~~~~~~---------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 8 HQIDDETLDNFYADNNLL-LLDSLRKNFID---------LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK 77 (229)
T ss_pred CCCCcccccccccCChHH-HHHHHHHHhhc---------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence 345678999999776432 11112211111 111247999999999999999999886 44566666553
Q ss_pred HHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCC-eEEEEEeCC
Q 014798 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG-IIVIAATNR 378 (418)
Q Consensus 300 fve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~-ViVIatTN~ 378 (418)
.... ..+.++... ..++|+|||++.+.. +.+.+..+.++++.+. .+.+ +++++++..
T Consensus 78 ~~~~--------~~~~~~~~~--~~dlLilDDi~~~~~---------~~~~~~~l~~l~n~~~---~~~~~illits~~~ 135 (229)
T PRK06893 78 SQYF--------SPAVLENLE--QQDLVCLDDLQAVIG---------NEEWELAIFDLFNRIK---EQGKTLLLISADCS 135 (229)
T ss_pred hhhh--------hHHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHH---HcCCcEEEEeCCCC
Confidence 2111 112333332 347999999999853 2333445666666543 2233 344455556
Q ss_pred CCCcc---hhhhCCCccceEEEecCch---HHHHHHHHhhcc
Q 014798 379 ADILD---SALLRPGRFDRQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 379 ~~~LD---~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~ 414 (418)
|..++ +.|.++.+++..+.+ +.| +|.+|++.++..
T Consensus 136 p~~l~~~~~~L~sRl~~g~~~~l-~~pd~e~~~~iL~~~a~~ 176 (229)
T PRK06893 136 PHALSIKLPDLASRLTWGEIYQL-NDLTDEQKIIVLQRNAYQ 176 (229)
T ss_pred hHHccccchhHHHHHhcCCeeeC-CCCCHHHHHHHHHHHHHH
Confidence 66554 888885556678888 777 999999977753
No 84
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.42 E-value=1.8e-12 Score=137.46 Aligned_cols=164 Identities=20% Similarity=0.248 Sum_probs=113.8
Q ss_pred ccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCe-------
Q 014798 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF------- 292 (418)
Q Consensus 220 ~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf------- 292 (418)
.+.+++.+-+|+|++|++.+.+.+...+..- +.+.++||+||||||||++|+++|+++++.-
T Consensus 10 ~la~kyRP~~f~dliGq~~vv~~L~~ai~~~-----------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~ 78 (507)
T PRK06645 10 PFARKYRPSNFAELQGQEVLVKVLSYTILND-----------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTT 78 (507)
T ss_pred chhhhhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcC
Confidence 3556778899999999999999887766532 2345899999999999999999999886421
Q ss_pred -----eeeehhhHHHH----h------hhcchhHHHHHHHHHHhC----CCeEEEEcCCcccccccCCCCCCCChHHHHH
Q 014798 293 -----FSISGSEFVEM----F------VGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (418)
Q Consensus 293 -----i~vs~sefve~----~------vg~~~~~vr~lF~~A~~~----aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~ 353 (418)
..-+|..+.+. + ...+...++++++.+... ...|++|||+|.+. ...
T Consensus 79 ~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------~~a 144 (507)
T PRK06645 79 IKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------KGA 144 (507)
T ss_pred cCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------HHH
Confidence 11122222211 0 112456788888877532 34699999999884 235
Q ss_pred HHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhhc
Q 014798 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 354 L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~ 413 (418)
.+.|+..++. ....+++|++|+.++.+.+++++ |+ ..+.+.+++ +..++++..++
T Consensus 145 ~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~ 201 (507)
T PRK06645 145 FNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITK 201 (507)
T ss_pred HHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHH
Confidence 6778888774 34567888888888899999988 76 346662333 55666665554
No 85
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.42 E-value=1.6e-12 Score=130.56 Aligned_cols=157 Identities=22% Similarity=0.325 Sum_probs=110.7
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC---------
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p--------- 291 (418)
+.++..+.+|+|++|++++++.+.+.+..- +.|..+||+||||+|||++|+++|..+..+
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~~-----------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~ 72 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAIKNG-----------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCN 72 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 456778899999999999999888877532 234578999999999999999999887432
Q ss_pred ---------------eeeeehhhHHHHhhhcchhHHHHHHHHHHhC----CCeEEEEcCCcccccccCCCCCCCChHHHH
Q 014798 292 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (418)
Q Consensus 292 ---------------fi~vs~sefve~~vg~~~~~vr~lF~~A~~~----aP~IIfIDEIDal~~~r~~~~~~~~~e~~~ 352 (418)
++.+++.+ ..+...++++++.+... ...||+|||+|.+. ..
T Consensus 73 ~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------------~~ 132 (355)
T TIGR02397 73 ECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------------KS 132 (355)
T ss_pred CCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------------HH
Confidence 22222210 12334577788776432 23599999999883 23
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhhcc
Q 014798 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 353 ~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~~ 414 (418)
..+.|+..++.. ...+++|++|+.++.+.+++++ |+. .+.+ +.| +..++++.++++
T Consensus 133 ~~~~Ll~~le~~--~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~-~~~~~~~l~~~l~~~~~~ 191 (355)
T TIGR02397 133 AFNALLKTLEEP--PEHVVFILATTEPHKIPATILS--RCQ-RFDF-KRIPLEDIVERLKKILDK 191 (355)
T ss_pred HHHHHHHHHhCC--ccceeEEEEeCCHHHHHHHHHh--hee-EEEc-CCCCHHHHHHHHHHHHHH
Confidence 567788888753 3457788888888888899988 774 5777 444 666677665543
No 86
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=1.5e-12 Score=143.88 Aligned_cols=151 Identities=21% Similarity=0.256 Sum_probs=104.8
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC-------eee
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFS 294 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi~ 294 (418)
.+++.+.+|+||+|++.+++.|...+..- +++..+||+||||||||++|+++|+++++. +..
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~ 75 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV 75 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC
Confidence 45677899999999999999888776632 234467999999999999999999998653 111
Q ss_pred e-ehhhHHHHh------h----hcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHH
Q 014798 295 I-SGSEFVEMF------V----GVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (418)
Q Consensus 295 v-s~sefve~~------v----g~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~ 359 (418)
+ +|..+.+.. + ..+...+|++.+.+.. ....|+||||+|.+. ....+.||.
T Consensus 76 C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------------~eAqNALLK 141 (944)
T PRK14949 76 CSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------------RSSFNALLK 141 (944)
T ss_pred chHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------------HHHHHHHHH
Confidence 1 111111110 0 1233456777665542 334699999999994 346788899
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 360 emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
.|+.. ...+++|++|+.+..|.+.+++ |+ ..+.+.+++
T Consensus 142 tLEEP--P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs 179 (944)
T PRK14949 142 TLEEP--PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLT 179 (944)
T ss_pred HHhcc--CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCC
Confidence 88853 3457788888888889999988 76 446663444
No 87
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.41 E-value=1.5e-12 Score=141.12 Aligned_cols=150 Identities=18% Similarity=0.258 Sum_probs=104.6
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCe-------ee
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------FS 294 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf-------i~ 294 (418)
.+++.+.+|+||+|++.+++.|...+..-+ .+..+||+||+|+|||++|+++|+.+++.. -.
T Consensus 7 a~KyRP~~f~divGQe~vv~~L~~~l~~~r-----------l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLTALANALDLGR-----------LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGE 75 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCC
Confidence 345678899999999999998887776422 344689999999999999999999886521 00
Q ss_pred e-ehhhHHHH----h---h---hcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHH
Q 014798 295 I-SGSEFVEM----F---V---GVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (418)
Q Consensus 295 v-s~sefve~----~---v---g~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~ 359 (418)
+ +|..+.+. + - ..+...+|++.+.+.. ....|++|||+|.+. ....|.||.
T Consensus 76 C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------------~~a~NALLK 141 (647)
T PRK07994 76 CDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------------RHSFNALLK 141 (647)
T ss_pred CHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------------HHHHHHHHH
Confidence 0 11111100 0 0 1234557777766542 345699999999984 346788888
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCc
Q 014798 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSL 401 (418)
Q Consensus 360 emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~l 401 (418)
.|+. ....+.+|.+|+.++.|.+.+++ |+ ..+.+.++
T Consensus 142 tLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~L 178 (647)
T PRK07994 142 TLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKAL 178 (647)
T ss_pred HHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCC
Confidence 8884 34567888888889999999998 75 56777333
No 88
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=1.6e-12 Score=140.06 Aligned_cols=141 Identities=18% Similarity=0.283 Sum_probs=101.6
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC----------
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p---------- 291 (418)
.+++.+.+|+||+|++.+++.|...+..- +.+..+||+||+|||||++|+++|+++++.
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~g-----------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~ 74 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALERG-----------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV 74 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc
Confidence 35567889999999999999888877622 334578999999999999999999988652
Q ss_pred --------------eeeeehhhHHHHhhhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHH
Q 014798 292 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (418)
Q Consensus 292 --------------fi~vs~sefve~~vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~ 353 (418)
++.+++++ ..+...+|++...+.. ....|++|||+|.+.. ..
T Consensus 75 C~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~--------------~A 134 (702)
T PRK14960 75 CATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST--------------HS 134 (702)
T ss_pred CHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH--------------HH
Confidence 22222221 1234567777766532 3457999999999842 35
Q ss_pred HHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEe
Q 014798 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 354 L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v 398 (418)
.+.|+..++.. ...+.+|++|+.+..+.+.+++ |+. .+.+
T Consensus 135 ~NALLKtLEEP--P~~v~FILaTtd~~kIp~TIlS--RCq-~feF 174 (702)
T PRK14960 135 FNALLKTLEEP--PEHVKFLFATTDPQKLPITVIS--RCL-QFTL 174 (702)
T ss_pred HHHHHHHHhcC--CCCcEEEEEECChHhhhHHHHH--hhh-eeec
Confidence 67788777743 3457788888888888888887 774 4556
No 89
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.41 E-value=2.5e-12 Score=142.15 Aligned_cols=163 Identities=25% Similarity=0.387 Sum_probs=111.2
Q ss_pred ccccCchHHHHHHHHHHHHhcCchhhhhcCCccCC-CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH-----h
Q 014798 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK-GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-----F 304 (418)
Q Consensus 231 ~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~-gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~-----~ 304 (418)
+.|+|++++++.+.+.+...+..-. ....|. .+||+||||||||++|+++|..++.+++.++++++.+. +
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~----~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~l 529 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLG----NPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRL 529 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCC----CCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHH
Confidence 3578899888888887765322110 001244 47899999999999999999999999999999998653 2
Q ss_pred hhc-----chhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC---------CCCCe
Q 014798 305 VGV-----GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------GNTGI 370 (418)
Q Consensus 305 vg~-----~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~---------~~~~V 370 (418)
+|. +......+.+..+.+..+||+|||||.+.+ ...+.|+..||... .-.++
T Consensus 530 ig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~--------------~~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 530 IGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP--------------DIYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred hcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH--------------HHHHHHHHhhccCeeecCCCcccCCCCC
Confidence 332 112223344555667778999999998742 34555666655421 12357
Q ss_pred EEEEEeCCCC-------------------------CcchhhhCCCccceEEEecCch--HHHHHHHHhhc
Q 014798 371 IVIAATNRAD-------------------------ILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 371 iVIatTN~~~-------------------------~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~ 413 (418)
++|+|||... .+.|.++. |||..+.+.++. +..+|++..++
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 8999998531 13556665 999999885555 77888887765
No 90
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=1.4e-12 Score=138.56 Aligned_cols=146 Identities=18% Similarity=0.269 Sum_probs=105.3
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC---------
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p--------- 291 (418)
..+++.+.+|+||+|++.+++.+...+..-+ .|..+||+||+|||||++|+++|+.+++.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~~~-----------l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 74 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQY-----------LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCN 74 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHhCC-----------CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCC
Confidence 4567788999999999999999988886433 34468999999999999999999988542
Q ss_pred ---------------eeeeehhhHHHHhhhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHH
Q 014798 292 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (418)
Q Consensus 292 ---------------fi~vs~sefve~~vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~ 352 (418)
++.++++ ...+...+|++.+.+.. ....|++|||+|.+.. .
T Consensus 75 ~C~~C~~i~~g~~~d~~eidaa------s~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~--------------~ 134 (509)
T PRK14958 75 DCENCREIDEGRFPDLFEVDAA------SRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG--------------H 134 (509)
T ss_pred CCHHHHHHhcCCCceEEEEccc------ccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH--------------H
Confidence 2333322 12344567787776542 2346999999999842 3
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 353 ~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
..|.||..|+.. .+.+.+|++|+.+..+.+.+++ |+ ..+.+.+++
T Consensus 135 a~naLLk~LEep--p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~ 179 (509)
T PRK14958 135 SFNALLKTLEEP--PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLP 179 (509)
T ss_pred HHHHHHHHHhcc--CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCC
Confidence 467788888754 3457788888888888888888 66 345552444
No 91
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=2.8e-12 Score=136.03 Aligned_cols=154 Identities=23% Similarity=0.337 Sum_probs=107.6
Q ss_pred cCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC-----------
Q 014798 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------- 291 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p----------- 291 (418)
+++.+.+|+||+|++.+++.|...+..-+ .|..+||+||||||||++|+++|.++...
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~~-----------l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQGR-----------LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 56778999999999999999988877422 34457999999999999999999987531
Q ss_pred ------------eeeeehhhHHHHhhhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHH
Q 014798 292 ------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLN 355 (418)
Q Consensus 292 ------------fi~vs~sefve~~vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~ 355 (418)
++.+++++ ..+...+|++.+.+.. ..+.||+|||+|.+. ...++
T Consensus 75 sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~n 134 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFN 134 (504)
T ss_pred hhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHH
Confidence 22222211 1234556776555432 346799999998773 34578
Q ss_pred HHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhh
Q 014798 356 QLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHS 412 (418)
Q Consensus 356 ~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l 412 (418)
.|+..++.. ...+++|.+|+.++.+.+++.+ |+. .+.+.+++ +-.+.++..+
T Consensus 135 aLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~ 188 (504)
T PRK14963 135 ALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLL 188 (504)
T ss_pred HHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHH
Confidence 888888753 3457888888989999999988 764 57772333 4444444433
No 92
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=1.5e-12 Score=136.17 Aligned_cols=167 Identities=17% Similarity=0.257 Sum_probs=102.9
Q ss_pred CCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-----CCCeeeeehh
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGS 298 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~vs~s 298 (418)
-.+..+|++.+-.+..............++.. .++++||||||||||+|++|+|+++ +..+++++++
T Consensus 98 l~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~~--------~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~ 169 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSFAYHAALEVAKNPGR--------YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_pred CCCCCcccccccCCchHHHHHHHHHHHhCcCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 35678999987333333333333333333321 3469999999999999999999876 4678999999
Q ss_pred hHHHHhhhcc-hhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 299 EFVEMFVGVG-ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 299 efve~~vg~~-~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
+|...+...- ...+.+ |.......+++|+|||++.+..+. ..+..+..++..+. .....+|+++.+
T Consensus 170 ~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~---------~~q~elf~~~n~l~---~~~k~iIitsd~ 236 (440)
T PRK14088 170 KFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT---------GVQTELFHTFNELH---DSGKQIVICSDR 236 (440)
T ss_pred HHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH---------HHHHHHHHHHHHHH---HcCCeEEEECCC
Confidence 9887664321 122223 333333457899999999885321 11223333443332 223345555555
Q ss_pred CCCC---cchhhhCCCccc--eEEEecCch---HHHHHHHHhhcc
Q 014798 378 RADI---LDSALLRPGRFD--RQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 378 ~~~~---LD~ALlRpGRFd--r~I~v~~lP---~R~~IL~~~l~~ 414 (418)
.|.. +++.+.+ ||. ..+.+ ..| .|.+|++..+..
T Consensus 237 ~p~~l~~l~~rL~S--R~~~gl~v~i-~~pd~e~r~~IL~~~~~~ 278 (440)
T PRK14088 237 EPQKLSEFQDRLVS--RFQMGLVAKL-EPPDEETRKKIARKMLEI 278 (440)
T ss_pred CHHHHHHHHHHHhh--HHhcCceEee-CCCCHHHHHHHHHHHHHh
Confidence 6654 4566777 774 35556 666 999999987754
No 93
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.40 E-value=1.1e-12 Score=135.57 Aligned_cols=147 Identities=27% Similarity=0.394 Sum_probs=93.8
Q ss_pred cccCchHHHHHHHHHHHH----hcCc-hhhhhcCCcc-CCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH-Hh
Q 014798 232 DVAGVDEAKQDFMEVVEF----LKKP-ERFTAIGARI-PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MF 304 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~----l~~p-~~~~~lG~~~-p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve-~~ 304 (418)
-|+|++++++.+...+.. +... ......+... ..++||+||||||||++|+++|..++.||..++++.+.+ .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 379999999999877632 2210 0000011112 357999999999999999999999999999999888653 46
Q ss_pred hhcch-hHHHHHHHHH----HhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC-----------CC
Q 014798 305 VGVGA-SRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-----------NT 368 (418)
Q Consensus 305 vg~~~-~~vr~lF~~A----~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~-----------~~ 368 (418)
+|... ..+..++..+ ....++||||||||.+.+++.......+-..+.+.+.||..|+|... ..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 77642 3333443322 23457899999999998765332212222223455666666655321 23
Q ss_pred CeEEEEEeCC
Q 014798 369 GIIVIAATNR 378 (418)
Q Consensus 369 ~ViVIatTN~ 378 (418)
+.++|.|+|-
T Consensus 238 ~~i~i~TsNi 247 (413)
T TIGR00382 238 EFIQIDTSNI 247 (413)
T ss_pred CeEEEEcCCc
Confidence 4778888875
No 94
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.40 E-value=5.8e-12 Score=127.21 Aligned_cols=167 Identities=20% Similarity=0.240 Sum_probs=109.9
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcC---------CCeeeee
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSIS 296 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~---------~pfi~vs 296 (418)
+....+++.|.++..+++...+...... ..+.+++|+||||||||+++++++.++. .++++++
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~~--------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in 81 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILRG--------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN 81 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE
Confidence 3455678999999999988877753221 1245799999999999999999987652 5688888
Q ss_pred hhhHH----------HHhh--hcc--------hhHHHHHHHHHH-hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHH
Q 014798 297 GSEFV----------EMFV--GVG--------ASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLN 355 (418)
Q Consensus 297 ~sefv----------e~~v--g~~--------~~~vr~lF~~A~-~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~ 355 (418)
|.... +.+. +.. ....+.++.... ...+.||+|||+|.+.... +..+.
T Consensus 82 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----------~~~L~ 150 (365)
T TIGR02928 82 CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----------DDLLY 150 (365)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----------cHHHH
Confidence 75432 1121 110 112344444433 2457899999999996211 12456
Q ss_pred HHHHHhcC-CCCCCCeEEEEEeCCCC---CcchhhhCCCccc-eEEEecCch--HHHHHHHHhhc
Q 014798 356 QLLTEMDG-FEGNTGIIVIAATNRAD---ILDSALLRPGRFD-RQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 356 ~LL~emdg-~~~~~~ViVIatTN~~~---~LD~ALlRpGRFd-r~I~v~~lP--~R~~IL~~~l~ 413 (418)
+|+...+. ...+.++.+|+++|.++ .+++.+.+ ||. ..+.++++. +..+|++.+++
T Consensus 151 ~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 151 QLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred hHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 66554221 12235689999999876 57888877 775 567884444 88899887764
No 95
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=3.3e-12 Score=137.99 Aligned_cols=160 Identities=16% Similarity=0.238 Sum_probs=108.1
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC---------
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p--------- 291 (418)
+.+++.+.+|+||+|++.+++.|.+.+..-+- +..+||+||+|||||++|+++|+.+++.
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~rl-----------~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~ 74 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQRL-----------HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT 74 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCC-----------CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC
Confidence 45667789999999999999988887774333 3468999999999999999999988641
Q ss_pred ---ee-eeehhhHH--------HH--hhhcchhHHHHHHHHHHhC----CCeEEEEcCCcccccccCCCCCCCChHHHHH
Q 014798 292 ---FF-SISGSEFV--------EM--FVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (418)
Q Consensus 292 ---fi-~vs~sefv--------e~--~vg~~~~~vr~lF~~A~~~----aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~ 353 (418)
+- .-+|..+. +. ....+...+|++.+.+... ...|++|||+|.+. ...
T Consensus 75 ~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls--------------~~a 140 (618)
T PRK14951 75 ATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT--------------NTA 140 (618)
T ss_pred CCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------------HHH
Confidence 00 01122221 10 0112345678888776432 24699999999984 235
Q ss_pred HHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHH
Q 014798 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKT 410 (418)
Q Consensus 354 L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~ 410 (418)
.|.||..++. ....+.+|++|+.+..+.+.+++ |+ ..+.+.+++ +-.+.++.
T Consensus 141 ~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~ 194 (618)
T PRK14951 141 FNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQ 194 (618)
T ss_pred HHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHH
Confidence 7788888874 33557788888888888888888 66 456662333 43444443
No 96
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=4.4e-12 Score=133.77 Aligned_cols=140 Identities=19% Similarity=0.306 Sum_probs=102.8
Q ss_pred cCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCC------------
Q 014798 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV------------ 290 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~------------ 290 (418)
.++.+.+|+|++|++.+++.+...+..- +.|.++||+||+|+|||++|+.+|+.+++
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~~-----------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTLN-----------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 4567889999999999999887666532 34558999999999999999999987632
Q ss_pred ------------CeeeeehhhHHHHhhhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHH
Q 014798 291 ------------PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 354 (418)
Q Consensus 291 ------------pfi~vs~sefve~~vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L 354 (418)
.++.+++++ ..+...+|++.+.+.. ....|++|||+|.+. ....
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------------~~A~ 133 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------------NSAF 133 (491)
T ss_pred HHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------------HHHH
Confidence 223333321 2245678888877643 235699999999884 2367
Q ss_pred HHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEe
Q 014798 355 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 355 ~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v 398 (418)
|.|+..++.. .+.+.+|++|+.++.+.+.+++ |+. .+.+
T Consensus 134 NaLLK~LEeP--p~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f 172 (491)
T PRK14964 134 NALLKTLEEP--APHVKFILATTEVKKIPVTIIS--RCQ-RFDL 172 (491)
T ss_pred HHHHHHHhCC--CCCeEEEEEeCChHHHHHHHHH--hhe-eeec
Confidence 8888888853 3467888888888889999988 663 3556
No 97
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.37 E-value=4.6e-12 Score=136.06 Aligned_cols=160 Identities=23% Similarity=0.268 Sum_probs=109.5
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC-------eee
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFS 294 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi~ 294 (418)
.+++.+.+|+||+|++.+++.+...+..-+ .+..+||+||+|||||++|+.+|+++.++ +-.
T Consensus 7 ~~k~rP~~f~~viGq~~v~~~L~~~i~~~~-----------~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~ 75 (559)
T PRK05563 7 YRKWRPQTFEDVVGQEHITKTLKNAIKQGK-----------ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE 75 (559)
T ss_pred HHHhCCCcHHhccCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 356678899999999999999888877432 34468999999999999999999987532 111
Q ss_pred e-ehhhHHHH----------hhhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHH
Q 014798 295 I-SGSEFVEM----------FVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (418)
Q Consensus 295 v-s~sefve~----------~vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~ 359 (418)
+ +|..+.+. ..+.+...+|++.+.+.. ....|++|||+|.+. ....|.||.
T Consensus 76 C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------------~~a~naLLK 141 (559)
T PRK05563 76 CEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------------TGAFNALLK 141 (559)
T ss_pred cHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHHHH
Confidence 1 11111100 012345567888877653 235699999999984 236778888
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhh
Q 014798 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHS 412 (418)
Q Consensus 360 emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l 412 (418)
.++. ....+++|++|+.++.+.+.+++ |+. .+.+ ..| +-.+.++..+
T Consensus 142 tLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f-~~~~~~ei~~~L~~i~ 191 (559)
T PRK05563 142 TLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDF-KRISVEDIVERLKYIL 191 (559)
T ss_pred HhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEec-CCCCHHHHHHHHHHHH
Confidence 8874 34567888788889999999988 775 4566 444 4344444433
No 98
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.37 E-value=5.8e-12 Score=135.28 Aligned_cols=164 Identities=20% Similarity=0.301 Sum_probs=105.2
Q ss_pred CCCcccccccCchHHH---HHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-----CCCeeeee
Q 014798 225 NTGVTFDDVAGVDEAK---QDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSIS 296 (418)
Q Consensus 225 ~~~~~f~dV~G~de~k---~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~vs 296 (418)
....+|++++..+... ..+..+++ ++. ...+.++|||++|||||+|++|+|+++ +..+++++
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae---~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit 351 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAE---APA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHh---Ccc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 4678999987443322 22233322 221 112359999999999999999999876 56889999
Q ss_pred hhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014798 297 GSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (418)
Q Consensus 297 ~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatT 376 (418)
+.+|.+.+.........+.|... -..+++|+||||+.+..+ +..+..+.++++.+. .+.+ .+|.|+
T Consensus 352 aeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gk---------e~tqeeLF~l~N~l~---e~gk-~IIITS 417 (617)
T PRK14086 352 SEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDK---------ESTQEEFFHTFNTLH---NANK-QIVLSS 417 (617)
T ss_pred HHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCC---------HHHHHHHHHHHHHHH---hcCC-CEEEec
Confidence 99998877654332223334433 234689999999998532 223344455555543 2222 344566
Q ss_pred CCC----CCcchhhhCCCccceEE--EecCch---HHHHHHHHhhccC
Q 014798 377 NRA----DILDSALLRPGRFDRQV--KHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 377 N~~----~~LD~ALlRpGRFdr~I--~v~~lP---~R~~IL~~~l~~k 415 (418)
|.+ ..+++.|.+ ||...+ .+ ..| .|.+||+.+++.+
T Consensus 418 d~~P~eL~~l~~rL~S--Rf~~GLvv~I-~~PD~EtR~aIL~kka~~r 462 (617)
T PRK14086 418 DRPPKQLVTLEDRLRN--RFEWGLITDV-QPPELETRIAILRKKAVQE 462 (617)
T ss_pred CCChHhhhhccHHHHh--hhhcCceEEc-CCCCHHHHHHHHHHHHHhc
Confidence 643 357888998 886555 55 556 9999999887654
No 99
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.36 E-value=6.1e-12 Score=118.47 Aligned_cols=153 Identities=19% Similarity=0.240 Sum_probs=95.3
Q ss_pred CCCcccccccC--chHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhh
Q 014798 225 NTGVTFDDVAG--VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (418)
Q Consensus 225 ~~~~~f~dV~G--~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~se 299 (418)
....+|+++.. .+.+.+++++++. . ..+.+++|+||+|||||++|++++.++ +.+++++++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~~---~---------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~ 76 (226)
T TIGR03420 9 PDDPTFDNFYAGGNAELLAALRQLAA---G---------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAE 76 (226)
T ss_pred CCchhhcCcCcCCcHHHHHHHHHHHh---c---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHH
Confidence 34577888773 4455665555543 1 124579999999999999999999876 57899999998
Q ss_pred HHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC-C
Q 014798 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN-R 378 (418)
Q Consensus 300 fve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN-~ 378 (418)
+.+.. .+++.... .+.+|+|||+|.+... .+..+.+..++..+.. ... .+|.|++ .
T Consensus 77 ~~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~---------~~~~~~L~~~l~~~~~---~~~-~iIits~~~ 133 (226)
T TIGR03420 77 LAQAD--------PEVLEGLE--QADLVCLDDVEAIAGQ---------PEWQEALFHLYNRVRE---AGG-RLLIAGRAA 133 (226)
T ss_pred HHHhH--------HHHHhhcc--cCCEEEEeChhhhcCC---------hHHHHHHHHHHHHHHH---cCC-eEEEECCCC
Confidence 86532 23333322 2359999999998421 1223445555554432 222 3445555 4
Q ss_pred CCCcc---hhhhCCCcc--ceEEEecCch--HHHHHHHHhhcc
Q 014798 379 ADILD---SALLRPGRF--DRQVKHVSLS--LMLWFLKTHSQY 414 (418)
Q Consensus 379 ~~~LD---~ALlRpGRF--dr~I~v~~lP--~R~~IL~~~l~~ 414 (418)
+..++ +.|.+ |+ ...+.+|++. ++..+++.++.+
T Consensus 134 ~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~ 174 (226)
T TIGR03420 134 PAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAAR 174 (226)
T ss_pred hHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHH
Confidence 43332 67776 65 4678783333 778888766543
No 100
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.36 E-value=6.1e-12 Score=119.39 Aligned_cols=149 Identities=19% Similarity=0.201 Sum_probs=92.0
Q ss_pred cCCCCcccccccC--chHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeeh
Q 014798 223 EPNTGVTFDDVAG--VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (418)
Q Consensus 223 ~~~~~~~f~dV~G--~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~ 297 (418)
...++.+|+++.+ ..++...+.++... ...+.+++|+||+|||||+||+++++++ +.+++++++
T Consensus 10 ~~~~~~~~d~f~~~~~~~~~~~l~~~~~~-----------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~ 78 (227)
T PRK08903 10 GPPPPPTFDNFVAGENAELVARLRELAAG-----------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDA 78 (227)
T ss_pred CCCChhhhcccccCCcHHHHHHHHHHHhc-----------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeh
Confidence 3456688999773 34444444444331 1223479999999999999999999875 778999999
Q ss_pred hhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 298 sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
.++.+.+ . ......+|+|||+|.+.. ..+..+..++..+. .+...++|.+++
T Consensus 79 ~~~~~~~------------~--~~~~~~~liiDdi~~l~~-----------~~~~~L~~~~~~~~---~~~~~~vl~~~~ 130 (227)
T PRK08903 79 ASPLLAF------------D--FDPEAELYAVDDVERLDD-----------AQQIALFNLFNRVR---AHGQGALLVAGP 130 (227)
T ss_pred HHhHHHH------------h--hcccCCEEEEeChhhcCc-----------hHHHHHHHHHHHHH---HcCCcEEEEeCC
Confidence 8865421 1 122356999999998732 22344555555443 233334555554
Q ss_pred CCC---CcchhhhCCCcc--ceEEEecCch--HHHHHHHHhh
Q 014798 378 RAD---ILDSALLRPGRF--DRQVKHVSLS--LMLWFLKTHS 412 (418)
Q Consensus 378 ~~~---~LD~ALlRpGRF--dr~I~v~~lP--~R~~IL~~~l 412 (418)
.+. .+.+.|.+ || ...+.++++. ++.++++.+.
T Consensus 131 ~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 131 AAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 322 35677776 76 4678883333 5555665443
No 101
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.35 E-value=8.4e-12 Score=118.91 Aligned_cols=164 Identities=21% Similarity=0.326 Sum_probs=98.2
Q ss_pred CCCccccccc-Cc--hHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-----CCCeeeee
Q 014798 225 NTGVTFDDVA-GV--DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSIS 296 (418)
Q Consensus 225 ~~~~~f~dV~-G~--de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~vs 296 (418)
+++.||++.+ |. ..+...+..+.+ ++.. .-..++||||+|+|||+|++|+++++ +..+++++
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~---~~~~-------~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAE---NPGE-------RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHH---STTT-------SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHh---cCCC-------CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 3678999986 42 233333333322 2221 11248999999999999999998875 67899999
Q ss_pred hhhHHHHhhhcch-hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 014798 297 GSEFVEMFVGVGA-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (418)
Q Consensus 297 ~sefve~~vg~~~-~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIat 375 (418)
+.+|...+...-. ..+.++.+..+ ...+++|||++.+..+ ...+..+..+++.+. .+.+.+|+++
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~---------~~~q~~lf~l~n~~~---~~~k~li~ts 137 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK---------QRTQEELFHLFNRLI---ESGKQLILTS 137 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH---------HHHHHHHHHHHHHHH---HTTSEEEEEE
T ss_pred HHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc---------hHHHHHHHHHHHHHH---hhCCeEEEEe
Confidence 9999887654322 22333333322 4469999999998532 233445555555543 3344455555
Q ss_pred eCCCCC---cchhhhCCCccce--EEEecCch---HHHHHHHHhhccC
Q 014798 376 TNRADI---LDSALLRPGRFDR--QVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 376 TN~~~~---LD~ALlRpGRFdr--~I~v~~lP---~R~~IL~~~l~~k 415 (418)
...|.. +++.|.+ ||.. .+.+ ..| +|.+|++..+..+
T Consensus 138 ~~~P~~l~~~~~~L~S--Rl~~Gl~~~l-~~pd~~~r~~il~~~a~~~ 182 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRS--RLSWGLVVEL-QPPDDEDRRRILQKKAKER 182 (219)
T ss_dssp SS-TTTTTTS-HHHHH--HHHCSEEEEE-----HHHHHHHHHHHHHHT
T ss_pred CCCCccccccChhhhh--hHhhcchhhc-CCCCHHHHHHHHHHHHHHh
Confidence 455654 5677777 7755 6666 666 9999999877654
No 102
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.35 E-value=5e-12 Score=139.02 Aligned_cols=156 Identities=27% Similarity=0.333 Sum_probs=104.2
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef 300 (418)
+.++..+.+|+|++|++....+...+...+.... ..+++|+||||||||++|+++|++.+.+|+.+++...
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~---------~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~ 88 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKADR---------VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCC---------CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh
Confidence 4456678899999999988764222222232221 1269999999999999999999999999998887632
Q ss_pred HHHhhhcchhHHHHHHHHHH-----hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 014798 301 VEMFVGVGASRVRDLFKKAK-----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (418)
Q Consensus 301 ve~~vg~~~~~vr~lF~~A~-----~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIat 375 (418)
+...+++.+..+. .....++||||||.+... ..+.|+..++. ..+++|++
T Consensus 89 -------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~--------------qQdaLL~~lE~----g~IiLI~a 143 (725)
T PRK13341 89 -------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA--------------QQDALLPWVEN----GTITLIGA 143 (725)
T ss_pred -------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH--------------HHHHHHHHhcC----ceEEEEEe
Confidence 1223444444432 134579999999998421 23445555542 34677776
Q ss_pred eC--CCCCcchhhhCCCccceEEEecCch--HHHHHHHHhhc
Q 014798 376 TN--RADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 376 TN--~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~ 413 (418)
|+ ....+++++++ |. ..+.++++. +...|++..+.
T Consensus 144 TTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 144 TTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred cCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 64 33468899998 54 356674444 88888887765
No 103
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.34 E-value=2.5e-11 Score=123.98 Aligned_cols=166 Identities=20% Similarity=0.269 Sum_probs=108.3
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-----CCCeeeeehhhH-
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEF- 300 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~vs~sef- 300 (418)
....+.++|.++..+++...+....... .|.+++|+||||||||++++.++.++ ++.+++++|...
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~~~--------~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALRGS--------RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhCCC--------CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 3456788999999888888775532211 24469999999999999999999876 577899988642
Q ss_pred ---------HHHhhhc-------chh-HHHHHHHHHH-hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhc
Q 014798 301 ---------VEMFVGV-------GAS-RVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (418)
Q Consensus 301 ---------ve~~vg~-------~~~-~vr~lF~~A~-~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emd 362 (418)
.+.+.+. ... ....+.+... ...+.||+|||+|.+.... ....+..|+..++
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~ 167 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHE 167 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhh
Confidence 1222221 111 1222222222 2456899999999996211 1235677777665
Q ss_pred CCCCCCCeEEEEEeCCCC---CcchhhhCCCccc-eEEEecCch--HHHHHHHHhhc
Q 014798 363 GFEGNTGIIVIAATNRAD---ILDSALLRPGRFD-RQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 363 g~~~~~~ViVIatTN~~~---~LD~ALlRpGRFd-r~I~v~~lP--~R~~IL~~~l~ 413 (418)
.... .++.+|+++|..+ .+++.+.+ ||. ..+.++++. +..+|++.+++
T Consensus 168 ~~~~-~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 168 EYPG-ARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred ccCC-CeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHH
Confidence 5432 3688899988664 46777766 553 467774555 78888887764
No 104
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.34 E-value=2.4e-12 Score=129.09 Aligned_cols=150 Identities=32% Similarity=0.481 Sum_probs=101.1
Q ss_pred CCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC---eeeeehhhH
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGSEF 300 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p---fi~vs~sef 300 (418)
.-.+-+++|.+|++.+..+ ..++..+-... ++| .++||||||||||+||+.||.....+ |+.+++..
T Consensus 131 rmRPktL~dyvGQ~hlv~q-~gllrs~ieq~-------~ip-SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~- 200 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQN-------RIP-SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN- 200 (554)
T ss_pred hcCcchHHHhcchhhhcCc-chHHHHHHHcC-------CCC-ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-
Confidence 3456789999999887665 33333322221 112 59999999999999999999988665 77766643
Q ss_pred HHHhhhcchhHHHHHHHHHHh-----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEE
Q 014798 301 VEMFVGVGASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (418)
Q Consensus 301 ve~~vg~~~~~vr~lF~~A~~-----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIat 375 (418)
.+...+|++|++++. ....|+|||||+.+.+..+ ..+|-..+ +..|++|++
T Consensus 201 ------a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ--------------D~fLP~VE----~G~I~lIGA 256 (554)
T KOG2028|consen 201 ------AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ--------------DTFLPHVE----NGDITLIGA 256 (554)
T ss_pred ------cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh--------------hcccceec----cCceEEEec
Confidence 345679999999865 3467999999999865432 12333322 456888887
Q ss_pred e--CCCCCcchhhhCCCccceEEEecCch--HHHHHHHH
Q 014798 376 T--NRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKT 410 (418)
Q Consensus 376 T--N~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~ 410 (418)
| |..-.|..+|++ |+--.+.- ++| .-..||..
T Consensus 257 TTENPSFqln~aLlS--RC~VfvLe-kL~~n~v~~iL~r 292 (554)
T KOG2028|consen 257 TTENPSFQLNAALLS--RCRVFVLE-KLPVNAVVTILMR 292 (554)
T ss_pred ccCCCccchhHHHHh--ccceeEec-cCCHHHHHHHHHH
Confidence 7 455589999998 66433333 666 44555544
No 105
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.34 E-value=2.7e-12 Score=128.79 Aligned_cols=133 Identities=17% Similarity=0.184 Sum_probs=94.4
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH--hhhcchh----------HHHHHHHHHHhCCCeEEEEcCC
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM--FVGVGAS----------RVRDLFKKAKENAPCIVFVDEI 332 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~--~vg~~~~----------~vr~lF~~A~~~aP~IIfIDEI 332 (418)
++++|.||||||||++++.+|.+++.|++.++++...+. ++|...- .....+..|.. .++++++||+
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 479999999999999999999999999999998876654 4453211 11223444443 4588999999
Q ss_pred cccccccCCCCCCCChHHHHHHHHHHHH-----hc----CCCCCCCeEEEEEeCCCC------------CcchhhhCCCc
Q 014798 333 DAVGRQRGTGIGGGNDEREQTLNQLLTE-----MD----GFEGNTGIIVIAATNRAD------------ILDSALLRPGR 391 (418)
Q Consensus 333 Dal~~~r~~~~~~~~~e~~~~L~~LL~e-----md----g~~~~~~ViVIatTN~~~------------~LD~ALlRpGR 391 (418)
|..-+ +....++.+|+. ++ .+..++.+.||||+|..+ .|++|++. |
T Consensus 144 n~a~p-----------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--R 210 (327)
T TIGR01650 144 DAGRP-----------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--R 210 (327)
T ss_pred hccCH-----------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--h
Confidence 98732 334556667663 11 122445799999999865 36889999 9
Q ss_pred cceEEEecCch---HHHHHHHHhh
Q 014798 392 FDRQVKHVSLS---LMLWFLKTHS 412 (418)
Q Consensus 392 Fdr~I~v~~lP---~R~~IL~~~l 412 (418)
|-..+.+ ++| +-.+|+....
T Consensus 211 F~i~~~~-~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 211 WSIVTTL-NYLEHDNEAAIVLAKA 233 (327)
T ss_pred eeeEeeC-CCCCHHHHHHHHHhhc
Confidence 9888888 888 5556665543
No 106
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=6.8e-12 Score=127.58 Aligned_cols=160 Identities=20% Similarity=0.313 Sum_probs=106.1
Q ss_pred ccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhh
Q 014798 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (418)
Q Consensus 220 ~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~se 299 (418)
.+.+++.+.+|+|++|++.+++.+.+.+.. . +.|.++|||||||+|||++|+++|.++..+.....+.+
T Consensus 6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~~---~--------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~ 74 (367)
T PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIEN---N--------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNED 74 (367)
T ss_pred HHHHHHCCCcHHhcCCcHHHHHHHHHHHHc---C--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 456778889999999999999888777653 1 23457999999999999999999998754322111110
Q ss_pred H------HHHhhhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 014798 300 F------VEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG 369 (418)
Q Consensus 300 f------ve~~vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ 369 (418)
+ .+.....+...++++++.+.. ..+.||+|||+|.+.. ..++.|+..++.. ...
T Consensus 75 ~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------------~~~~~ll~~le~~--~~~ 138 (367)
T PRK14970 75 FSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------------AAFNAFLKTLEEP--PAH 138 (367)
T ss_pred CCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH--------------HHHHHHHHHHhCC--CCc
Confidence 0 000111233567777776643 2356999999998742 2466777777642 334
Q ss_pred eEEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHH
Q 014798 370 IIVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKT 410 (418)
Q Consensus 370 ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~ 410 (418)
.++|++|+.+..+.+++.+ |+. .+.+ +.| +...++..
T Consensus 139 ~~~Il~~~~~~kl~~~l~s--r~~-~v~~-~~~~~~~l~~~l~~ 178 (367)
T PRK14970 139 AIFILATTEKHKIIPTILS--RCQ-IFDF-KRITIKDIKEHLAG 178 (367)
T ss_pred eEEEEEeCCcccCCHHHHh--cce-eEec-CCccHHHHHHHHHH
Confidence 5677777778889999987 553 5677 554 43444443
No 107
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=6.5e-12 Score=134.06 Aligned_cols=147 Identities=18% Similarity=0.259 Sum_probs=101.6
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC-------eee
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFS 294 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi~ 294 (418)
.+++.+.+|+||+|++.+++.+...+..-+ .+..+||+||||+|||++|+++|+.+++. +-.
T Consensus 7 ~~k~rP~~f~divGq~~v~~~L~~~i~~~~-----------~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~ 75 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRALTNALEQQR-----------LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGV 75 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcCC-----------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 355677899999999999998888776422 33468999999999999999999988542 111
Q ss_pred e-ehhhHHH-----H-----hhhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHH
Q 014798 295 I-SGSEFVE-----M-----FVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (418)
Q Consensus 295 v-s~sefve-----~-----~vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~ 359 (418)
+ +|..+.. . -...+...+|++.+.+.. ....|++|||+|.+. ....|.||.
T Consensus 76 C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------------~~a~naLLK 141 (527)
T PRK14969 76 CSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------------KSAFNAMLK 141 (527)
T ss_pred CHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------HHHHHHHHH
Confidence 1 1111100 0 001234567888777643 234699999999984 235678888
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEe
Q 014798 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 360 emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v 398 (418)
.++.. .+.+++|++|+.++.+.+.+++ |+ ..+.+
T Consensus 142 ~LEep--p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f 175 (527)
T PRK14969 142 TLEEP--PEHVKFILATTDPQKIPVTVLS--RC-LQFNL 175 (527)
T ss_pred HHhCC--CCCEEEEEEeCChhhCchhHHH--HH-HHHhc
Confidence 88753 3567788888888888888887 65 45666
No 108
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=8.3e-12 Score=135.45 Aligned_cols=148 Identities=19% Similarity=0.250 Sum_probs=103.0
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCe-------e
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------F 293 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf-------i 293 (418)
..+++.+.+|+||+|++.+++.|...+..- +.+.++||+||+|||||++|+++|+++++.- -
T Consensus 6 LarKYRP~tFddIIGQe~vv~~L~~ai~~~-----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg 74 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDEG-----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCG 74 (709)
T ss_pred HHHHhCCCCHHHHcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Confidence 345678899999999999999888877732 3455799999999999999999999875431 1
Q ss_pred ee-ehhhHHHH----------hhhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHH
Q 014798 294 SI-SGSEFVEM----------FVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (418)
Q Consensus 294 ~v-s~sefve~----------~vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL 358 (418)
.+ +|..+... ....+...+|++++.+.. ....||||||+|.+. ....+.||
T Consensus 75 ~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NALL 140 (709)
T PRK08691 75 VCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNAML 140 (709)
T ss_pred ccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHHHH
Confidence 10 11111100 012344567888876532 334799999999873 23567788
Q ss_pred HHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEe
Q 014798 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 359 ~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v 398 (418)
..|+.. .+.+.+|++|+.+..+.+.+++ |+ ..+.+
T Consensus 141 KtLEEP--p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f 175 (709)
T PRK08691 141 KTLEEP--PEHVKFILATTDPHKVPVTVLS--RC-LQFVL 175 (709)
T ss_pred HHHHhC--CCCcEEEEEeCCccccchHHHH--HH-hhhhc
Confidence 888743 3457888888888888888886 76 33444
No 109
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=8e-12 Score=139.03 Aligned_cols=160 Identities=23% Similarity=0.240 Sum_probs=106.4
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC-------eee
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFS 294 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi~ 294 (418)
.+++.+.+|+||+|++.+++.|...+..- +.+..+||+||+|||||++|+++|+++.+. +-.
T Consensus 6 ~~KyRP~~f~eiiGqe~v~~~L~~~i~~~-----------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 6 YRRYRPATFAEVIGQEHVTEPLSTALDSG-----------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 36678899999999999999888877632 234468999999999999999999988641 111
Q ss_pred -eehhhHHHH---------h---hhcchhHHHHHHHHHH----hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHH
Q 014798 295 -ISGSEFVEM---------F---VGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (418)
Q Consensus 295 -vs~sefve~---------~---vg~~~~~vr~lF~~A~----~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~L 357 (418)
-+|..+... + ...+...+|++.+.+. .....|+||||+|.|. ....|.|
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------------~~a~NaL 140 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVT--------------PQGFNAL 140 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcC--------------HHHHHHH
Confidence 111111100 0 0012345666554432 2445799999999994 3456778
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhh
Q 014798 358 LTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHS 412 (418)
Q Consensus 358 L~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l 412 (418)
|+.|+.. ...+++|++|+.++.|-+.|++ |+ ..+.| ..+ +-.++|+..+
T Consensus 141 LK~LEEp--P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F-~~l~~~~l~~~L~~il 192 (824)
T PRK07764 141 LKIVEEP--PEHLKFIFATTEPDKVIGTIRS--RT-HHYPF-RLVPPEVMRGYLERIC 192 (824)
T ss_pred HHHHhCC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEe-eCCCHHHHHHHHHHHH
Confidence 8888753 3467888888888889889988 65 35666 433 3344444433
No 110
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.32 E-value=2.3e-11 Score=120.08 Aligned_cols=159 Identities=23% Similarity=0.305 Sum_probs=103.2
Q ss_pred cccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcC-----CCee
Q 014798 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFF 293 (418)
Q Consensus 219 ~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~-----~pfi 293 (418)
.+|.+++.+.+|+|++|.+++++.+...++. .. . .+++|+||||||||++++++++++. .+++
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~---~~--------~-~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i 72 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKE---KN--------M-PHLLFAGPPGTGKTTAALALARELYGEDWRENFL 72 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhC---CC--------C-CeEEEECCCCCCHHHHHHHHHHHHcCCccccceE
Confidence 4688899999999999999999988877642 11 1 2489999999999999999999873 2445
Q ss_pred eeehhhHHHHhhhcchhHHHHHHHHHHh------CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 014798 294 SISGSEFVEMFVGVGASRVRDLFKKAKE------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (418)
Q Consensus 294 ~vs~sefve~~vg~~~~~vr~lF~~A~~------~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~ 367 (418)
.+++++-. +...+++.+..... ..+.+|+|||+|.+.. + ..+.|+..++....
T Consensus 73 ~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~-----------~---~~~~L~~~le~~~~- 131 (319)
T PRK00440 73 ELNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS-----------D---AQQALRRTMEMYSQ- 131 (319)
T ss_pred Eecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH-----------H---HHHHHHHHHhcCCC-
Confidence 55443311 11122222222211 2356999999998842 1 23345555554333
Q ss_pred CCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhhcc
Q 014798 368 TGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQY 414 (418)
Q Consensus 368 ~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~~ 414 (418)
...+|.++|.+..+.+++.+ |+. .+.+++++ +...+++.++++
T Consensus 132 -~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~ 176 (319)
T PRK00440 132 -NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAEN 176 (319)
T ss_pred -CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHH
Confidence 35667778877778788887 665 46773333 666667666543
No 111
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=1.1e-11 Score=135.43 Aligned_cols=160 Identities=24% Similarity=0.356 Sum_probs=111.1
Q ss_pred ccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCee---eee
Q 014798 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF---SIS 296 (418)
Q Consensus 220 ~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi---~vs 296 (418)
.+.+++.+.+|+||+|++.+++.+...+..- +.+..+||+||+|+|||++|+++|..+.++-. .-.
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p 75 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP 75 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc
Confidence 3566778999999999999999888877632 23457899999999999999999998754311 011
Q ss_pred hhhHHH---H----h-----hhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHH
Q 014798 297 GSEFVE---M----F-----VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 360 (418)
Q Consensus 297 ~sefve---~----~-----vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~e 360 (418)
|..... . + ...+...+|++.+.+.. ....|++|||+|.+. ....+.||..
T Consensus 76 C~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------------~~A~NALLKt 141 (725)
T PRK07133 76 CQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------------KSAFNALLKT 141 (725)
T ss_pred hhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------------HHHHHHHHHH
Confidence 211110 0 0 01234557888877654 345699999999984 2357788888
Q ss_pred hcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHH
Q 014798 361 MDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLK 409 (418)
Q Consensus 361 mdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~ 409 (418)
|+. +...+++|++|+.++.|.+++++ |+. .+.+.+++ +-.+.++
T Consensus 142 LEE--PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~ 187 (725)
T PRK07133 142 LEE--PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLE 187 (725)
T ss_pred hhc--CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHH
Confidence 885 34567888888889999999998 775 57773443 4344444
No 112
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.31 E-value=1.1e-11 Score=104.15 Aligned_cols=122 Identities=35% Similarity=0.516 Sum_probs=81.2
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCC---eeeeehhhHHHH--------------hhhcchhHHHHHHHHHHhCCCeEE
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGSEFVEM--------------FVGVGASRVRDLFKKAKENAPCIV 327 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~p---fi~vs~sefve~--------------~vg~~~~~vr~lF~~A~~~aP~II 327 (418)
..++|+||||||||++++++|..+... +++++++..... .........+.+++.+....|++|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 469999999999999999999999765 888887764332 122445667788888888878999
Q ss_pred EEcCCcccccccCCCCCCCChHHHHHHHHH--HHHhcCCCCCCCeEEEEEeCC-CCCcchhhhCCCccceEEEe
Q 014798 328 FVDEIDAVGRQRGTGIGGGNDEREQTLNQL--LTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 328 fIDEIDal~~~r~~~~~~~~~e~~~~L~~L--L~emdg~~~~~~ViVIatTN~-~~~LD~ALlRpGRFdr~I~v 398 (418)
+|||++.+..... ....... ..............+|+++|. ....+..+.+ |++.++.+
T Consensus 83 iiDei~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~ 144 (148)
T smart00382 83 ILDEITSLLDAEQ----------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVL 144 (148)
T ss_pred EEECCcccCCHHH----------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEe
Confidence 9999999864321 1111100 000111122345789999996 3333444444 88888877
No 113
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=8.8e-12 Score=134.32 Aligned_cols=154 Identities=19% Similarity=0.271 Sum_probs=105.1
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC---------
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p--------- 291 (418)
+.+++.+.+|+||+|++.+++.|...+..-+ .+..+||+||||||||++|+++|+.+.+.
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai~~~r-----------i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg 74 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQENR-----------VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCN 74 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHcCC-----------CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCc
Confidence 4566788999999999999998888776322 23479999999999999999999988642
Q ss_pred ---------------eeeeehhhHHHHhhhcchhHHHHHHHHHH----hCCCeEEEEcCCcccccccCCCCCCCChHHHH
Q 014798 292 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (418)
Q Consensus 292 ---------------fi~vs~sefve~~vg~~~~~vr~lF~~A~----~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~ 352 (418)
++.+++.. ..+...+|.+.+.+. .....||||||+|.+. ..
T Consensus 75 ~C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------------~~ 134 (624)
T PRK14959 75 TCEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------------RE 134 (624)
T ss_pred ccHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------------HH
Confidence 22222211 112334555443332 2345799999999984 23
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHH
Q 014798 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKT 410 (418)
Q Consensus 353 ~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~ 410 (418)
..+.|+..++.. ...+++|++||.++.+.+.+++ |+. .+.+.+++ +-.++|+.
T Consensus 135 a~naLLk~LEEP--~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~ 189 (624)
T PRK14959 135 AFNALLKTLEEP--PARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTK 189 (624)
T ss_pred HHHHHHHHhhcc--CCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHH
Confidence 467788888753 3467888888888888888887 764 56673443 33444443
No 114
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=1.1e-11 Score=133.09 Aligned_cols=161 Identities=19% Similarity=0.252 Sum_probs=107.0
Q ss_pred ccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC-e----ee
Q 014798 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-F----FS 294 (418)
Q Consensus 220 ~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-f----i~ 294 (418)
.+.+++.+.+|+|++|++.+++.+...+..- +.|.++||+||+|+|||++|+++|..+.+. . ..
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~-----------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~C 73 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILNN-----------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCC 73 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 3567778899999999999999888766532 234579999999999999999999987421 0 00
Q ss_pred eehh---hH--------HHH--hhhcchhHHHHHHHHHHhC----CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHH
Q 014798 295 ISGS---EF--------VEM--FVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (418)
Q Consensus 295 vs~s---ef--------ve~--~vg~~~~~vr~lF~~A~~~----aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~L 357 (418)
-.|. .+ .+. ....+...+|++.+.+... ...|++|||+|.+.. ...+.|
T Consensus 74 g~C~sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~--------------~A~NaL 139 (605)
T PRK05896 74 NSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST--------------SAWNAL 139 (605)
T ss_pred cccHHHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH--------------HHHHHH
Confidence 1111 11 000 0012344577777665432 235999999999832 245678
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHH
Q 014798 358 LTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKT 410 (418)
Q Consensus 358 L~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~ 410 (418)
+..|+. +...+++|++|+.++.|.+++++ |+. .+.+.+++ +-...++.
T Consensus 140 LKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~ 189 (605)
T PRK05896 140 LKTLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKS 189 (605)
T ss_pred HHHHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHH
Confidence 887774 33467888888889999999998 765 56673333 33434443
No 115
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=1.7e-11 Score=130.83 Aligned_cols=150 Identities=20% Similarity=0.284 Sum_probs=100.0
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCC-------Ceee
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFS 294 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~-------pfi~ 294 (418)
.++..+.+|+||+|++.+++.+...+..-+ .+..+||+||+|||||++|+++|+.+.. |.-.
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i~~~r-----------l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHALETQK-----------VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNK 75 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 456678899999999999998887776322 3446899999999999999999998753 1111
Q ss_pred e-ehhhHH--------HH--hhhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHH
Q 014798 295 I-SGSEFV--------EM--FVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (418)
Q Consensus 295 v-s~sefv--------e~--~vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~ 359 (418)
+ +|..+. +. ....+...++++.+.+.. ....|++|||+|.+. ....+.||.
T Consensus 76 C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------------~~a~naLLK 141 (546)
T PRK14957 76 CENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------------KQSFNALLK 141 (546)
T ss_pred cHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------------HHHHHHHHH
Confidence 0 111110 00 011233456666665542 345699999999984 235677888
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 360 emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
.++.. .+.+++|++|+.+..+.+++++ |+ ..+.+ ..+
T Consensus 142 ~LEep--p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f-~~L 178 (546)
T PRK14957 142 TLEEP--PEYVKFILATTDYHKIPVTILS--RC-IQLHL-KHI 178 (546)
T ss_pred HHhcC--CCCceEEEEECChhhhhhhHHH--he-eeEEe-CCC
Confidence 88743 3456777777778888888887 66 55667 444
No 116
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=1.7e-11 Score=128.37 Aligned_cols=168 Identities=15% Similarity=0.234 Sum_probs=100.9
Q ss_pred CCCccccccc-CchHH--HHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehh
Q 014798 225 NTGVTFDDVA-GVDEA--KQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (418)
Q Consensus 225 ~~~~~f~dV~-G~de~--k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~s 298 (418)
.+..+|++.+ |.... ...++++.+.... ......++++||||+|+|||+|++|+++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~------~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQ------GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccc------ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 5678999987 43222 2233333221110 011122479999999999999999999876 7889999999
Q ss_pred hHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014798 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (418)
Q Consensus 299 efve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~ 378 (418)
+|...+...-...-.+.|.... ..+++++|||++.+..+. ..++.+..++..+. .... .+|.|+|.
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~---------~~qeelf~l~N~l~---~~~k-~IIlts~~ 244 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG---------ATQEEFFHTFNSLH---TEGK-LIVISSTC 244 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh---------hhHHHHHHHHHHHH---HCCC-cEEEecCC
Confidence 8876654322111122344332 346799999999985321 12333334433321 1122 45555554
Q ss_pred -CC---CcchhhhCCCccc--eEEEecCch---HHHHHHHHhhccC
Q 014798 379 -AD---ILDSALLRPGRFD--RQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 379 -~~---~LD~ALlRpGRFd--r~I~v~~lP---~R~~IL~~~l~~k 415 (418)
|. .+++.|.+ ||. ..+.+ ..| +|.+|++..+...
T Consensus 245 ~p~~l~~l~~rL~S--R~~~Gl~~~l-~~pd~e~r~~iL~~k~~~~ 287 (445)
T PRK12422 245 APQDLKAMEERLIS--RFEWGIAIPL-HPLTKEGLRSFLERKAEAL 287 (445)
T ss_pred CHHHHhhhHHHHHh--hhcCCeEEec-CCCCHHHHHHHHHHHHHHc
Confidence 43 56788888 886 45555 555 8999998877553
No 117
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.5e-11 Score=134.50 Aligned_cols=158 Identities=27% Similarity=0.396 Sum_probs=114.3
Q ss_pred ccccCchHHHHHHHHHHHH----hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcC---CCeeeeehhhHHHH
Q 014798 231 DDVAGVDEAKQDFMEVVEF----LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVEM 303 (418)
Q Consensus 231 ~dV~G~de~k~eL~e~v~~----l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~---~pfi~vs~sefve~ 303 (418)
+.|+|++++...+.+.+.. +.+|.+ +-..+||.||+|+|||.||+++|..+. ..++.+++|+|.++
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~r-------PigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNR-------PIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCC-------CceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 4589999999999888876 444432 123578899999999999999999995 89999999999986
Q ss_pred ------------hhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCC----
Q 014798 304 ------------FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN---- 367 (418)
Q Consensus 304 ------------~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~---- 367 (418)
|||..+. ..+-+..+.+..|||++|||++.- ..++|-||+-||.-.-.
T Consensus 564 HsVSrLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAH--------------pdV~nilLQVlDdGrLTD~~G 627 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAH--------------PDVFNLLLQVLDDGRLTDGQG 627 (786)
T ss_pred HHHHHHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcC--------------HHHHHHHHHHhcCCeeecCCC
Confidence 5665442 235556677778999999999873 34777788877653221
Q ss_pred -----CCeEEEEEeCCCC----------------------------CcchhhhCCCccceEEEecCch--HHHHHHHHhh
Q 014798 368 -----TGIIVIAATNRAD----------------------------ILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHS 412 (418)
Q Consensus 368 -----~~ViVIatTN~~~----------------------------~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l 412 (418)
.+.++|+|||--. ...|+++. |+|..|.|-++. .-.+|+..++
T Consensus 628 r~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L 705 (786)
T COG0542 628 RTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQL 705 (786)
T ss_pred CEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHH
Confidence 2489999999210 12345555 999888883444 6667766665
Q ss_pred c
Q 014798 413 Q 413 (418)
Q Consensus 413 ~ 413 (418)
.
T Consensus 706 ~ 706 (786)
T COG0542 706 N 706 (786)
T ss_pred H
Confidence 4
No 118
>PHA02244 ATPase-like protein
Probab=99.30 E-value=4.3e-11 Score=121.77 Aligned_cols=146 Identities=23% Similarity=0.338 Sum_probs=92.9
Q ss_pred cccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHh--h
Q 014798 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF--V 305 (418)
Q Consensus 228 ~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~--v 305 (418)
+.+.-+............+..++.... +|||+||||||||++|+++|..++.||+.+++. .+.+ .
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~~~-----------PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~ 160 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNANI-----------PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELK 160 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhcCC-----------CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhc
Confidence 333334444444455555555555543 799999999999999999999999999999843 2221 1
Q ss_pred h---cchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHH-----hcC-CCCCCCeEEEEEe
Q 014798 306 G---VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE-----MDG-FEGNTGIIVIAAT 376 (418)
Q Consensus 306 g---~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~e-----mdg-~~~~~~ViVIatT 376 (418)
| ........-|-.|.. ...+++|||+|.+.+ .....++.++.. .++ +..+.++.+|+|+
T Consensus 161 G~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p-----------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATs 228 (383)
T PHA02244 161 GFIDANGKFHETPFYEAFK-KGGLFFIDEIDASIP-----------EALIIINSAIANKFFDFADERVTAHEDFRVISAG 228 (383)
T ss_pred ccccccccccchHHHHHhh-cCCEEEEeCcCcCCH-----------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEee
Confidence 1 111111112333322 347999999998743 233445555532 111 1234678999999
Q ss_pred CCC-----------CCcchhhhCCCccceEEEecCch
Q 014798 377 NRA-----------DILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 377 N~~-----------~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
|.+ ..|++|+++ ||- .|.+ ++|
T Consensus 229 N~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~-dyp 261 (383)
T PHA02244 229 NTLGKGADHIYVARNKIDGATLD--RFA-PIEF-DYD 261 (383)
T ss_pred CCCccCcccccCCCcccCHHHHh--hcE-EeeC-CCC
Confidence 973 578999999 995 6889 888
No 119
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.30 E-value=4.3e-11 Score=115.03 Aligned_cols=154 Identities=16% Similarity=0.172 Sum_probs=94.9
Q ss_pred CCCCccccccc-C-chHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehh
Q 014798 224 PNTGVTFDDVA-G-VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (418)
Q Consensus 224 ~~~~~~f~dV~-G-~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~s 298 (418)
-.+..+|++.+ | ...+...+.++.. .+. +..++|+||||||||+|++++|+++ +..+.+++..
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~---~~~---------~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALR---QEH---------SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHh---CCC---------CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 44567899877 4 3444444444332 111 1369999999999999999999876 4556677766
Q ss_pred hHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCe-EEEEEeC
Q 014798 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGI-IVIAATN 377 (418)
Q Consensus 299 efve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~V-iVIatTN 377 (418)
++... ..++++.... ..+++|||++.+.. ..+.+..+..++..+-. +.+. +++++++
T Consensus 83 ~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~---------~~~~~~~lf~l~n~~~e---~g~~~li~ts~~ 140 (235)
T PRK08084 83 KRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAG---------DELWEMAIFDLYNRILE---SGRTRLLITGDR 140 (235)
T ss_pred HHhhh--------hHHHHHHhhh--CCEEEEeChhhhcC---------CHHHHHHHHHHHHHHHH---cCCCeEEEeCCC
Confidence 54321 1122222222 25899999999842 23445556566655421 2233 4444555
Q ss_pred CCCC---cchhhhCCCccc--eEEEecCch---HHHHHHHHhhcc
Q 014798 378 RADI---LDSALLRPGRFD--RQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 378 ~~~~---LD~ALlRpGRFd--r~I~v~~lP---~R~~IL~~~l~~ 414 (418)
.|.. +.+.|++ |+. ..+.+ ..| +|.++++.++..
T Consensus 141 ~p~~l~~~~~~L~S--Rl~~g~~~~l-~~~~~~~~~~~l~~~a~~ 182 (235)
T PRK08084 141 PPRQLNLGLPDLAS--RLDWGQIYKL-QPLSDEEKLQALQLRARL 182 (235)
T ss_pred ChHHcCcccHHHHH--HHhCCceeee-cCCCHHHHHHHHHHHHHH
Confidence 5555 5789998 875 56777 555 899998876654
No 120
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.29 E-value=8.4e-12 Score=122.92 Aligned_cols=150 Identities=24% Similarity=0.280 Sum_probs=104.9
Q ss_pred cccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC------e
Q 014798 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------F 292 (418)
Q Consensus 219 ~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p------f 292 (418)
..|.+++.+-+|+|++|++.+.+.+...+..-..| ++|+|||||||||+.|+++|.++..+ +
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp------------~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILP------------HYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCc------------eEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 45788899999999999999999998877752222 59999999999999999999998652 2
Q ss_pred eeeehhhHHHHhhhcchhHHHHHHHHHHhC---------C-CeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhc
Q 014798 293 FSISGSEFVEMFVGVGASRVRDLFKKAKEN---------A-PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (418)
Q Consensus 293 i~vs~sefve~~vg~~~~~vr~lF~~A~~~---------a-P~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emd 362 (418)
...+.|+....-+ ....+. -|++.... . +.||+|||.|.+. ..+.+.|..-|+
T Consensus 92 l~lnaSderGisv--vr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------------sdaq~aLrr~mE 154 (346)
T KOG0989|consen 92 LELNASDERGISV--VREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------------SDAQAALRRTME 154 (346)
T ss_pred hhhcccccccccc--hhhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhh--------------HHHHHHHHHHHh
Confidence 3334444322211 111111 12222211 1 2599999999995 346677888888
Q ss_pred CCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 363 GFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 363 g~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
.+.. .+++|..||..+.|...+.+ |... +.|++++
T Consensus 155 ~~s~--~trFiLIcnylsrii~pi~S--RC~K-frFk~L~ 189 (346)
T KOG0989|consen 155 DFSR--TTRFILICNYLSRIIRPLVS--RCQK-FRFKKLK 189 (346)
T ss_pred cccc--ceEEEEEcCChhhCChHHHh--hHHH-hcCCCcc
Confidence 7544 47889999999999999988 7653 4454665
No 121
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1.4e-11 Score=132.70 Aligned_cols=147 Identities=20% Similarity=0.302 Sum_probs=102.5
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCe-------e-
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------F- 293 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf-------i- 293 (418)
.+++.+.+|+||+|++.+++.|...+..- +.+..+||+||+|+|||++|+++|+++...- -
T Consensus 7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~ 75 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVSRTLQNAIDTG-----------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV 75 (576)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc
Confidence 35667889999999999999988877632 2445789999999999999999999875421 0
Q ss_pred eeehhhHH--------HH--hhhcchhHHHHHHHHHHhC----CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHH
Q 014798 294 SISGSEFV--------EM--FVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (418)
Q Consensus 294 ~vs~sefv--------e~--~vg~~~~~vr~lF~~A~~~----aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~ 359 (418)
.-+|.++. +. ....+...+|++.+.+... ...|++|||+|.+. ....|.|+.
T Consensus 76 c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------------~~a~naLLk 141 (576)
T PRK14965 76 CPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------------TNAFNALLK 141 (576)
T ss_pred cHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------------HHHHHHHHH
Confidence 01111111 00 0012345677877766432 23599999999984 235678888
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEe
Q 014798 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 360 emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v 398 (418)
.|+. ..+.+++|++|+.++.|.+.+++ |+. .+.+
T Consensus 142 ~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f 175 (576)
T PRK14965 142 TLEE--PPPHVKFIFATTEPHKVPITILS--RCQ-RFDF 175 (576)
T ss_pred HHHc--CCCCeEEEEEeCChhhhhHHHHH--hhh-hhhc
Confidence 8874 34568888888989999999987 653 4555
No 122
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=2.5e-11 Score=128.31 Aligned_cols=163 Identities=19% Similarity=0.267 Sum_probs=107.8
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCC-------Cee
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFF 293 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~-------pfi 293 (418)
+.++..+.+|+|++|++.+.+.+...+..-+ .+..+||+||+|+|||++|+++|..+++ |+-
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~-----------i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~ 74 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKLQR-----------VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCG 74 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHcCC-----------CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCC
Confidence 4456778899999999999998888775422 2346889999999999999999998753 111
Q ss_pred e-eehhhHHH-----Hh-----hhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHH
Q 014798 294 S-ISGSEFVE-----MF-----VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (418)
Q Consensus 294 ~-vs~sefve-----~~-----vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL 358 (418)
. .+|..+.. .+ ...+...+|.+.+.+.. ..+.|++|||+|.+.. ...+.|+
T Consensus 75 ~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~--------------~a~naLL 140 (486)
T PRK14953 75 KCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK--------------EAFNALL 140 (486)
T ss_pred ccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH--------------HHHHHHH
Confidence 1 12222111 00 11233456676665543 3457999999998842 2457778
Q ss_pred HHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhhc
Q 014798 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 359 ~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~ 413 (418)
..++.. ...+++|.+|+.++.+.+++.+ |+. .+.+.+++ +....++..++
T Consensus 141 k~LEep--p~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k 192 (486)
T PRK14953 141 KTLEEP--PPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICN 192 (486)
T ss_pred HHHhcC--CCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHH
Confidence 777743 3456777777778888889888 664 46673333 55556665544
No 123
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=2.1e-11 Score=131.27 Aligned_cols=146 Identities=23% Similarity=0.245 Sum_probs=101.1
Q ss_pred cCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC-------eeee
Q 014798 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSI 295 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi~v 295 (418)
+++.+.+|+||+|++.+++.|...+..- +.|..+||+||+|||||++|+++|+++.+. +-.+
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~~-----------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDAG-----------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 5677889999999999999988877632 234468999999999999999999987642 1110
Q ss_pred -ehhhHHH------Hh------hhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHH
Q 014798 296 -SGSEFVE------MF------VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (418)
Q Consensus 296 -s~sefve------~~------vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL 358 (418)
+|..+.. .+ ...+...+|++.+.+.. ....|++|||+|.+. ....|.||
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------------~~A~NALL 139 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------------TAGFNALL 139 (584)
T ss_pred HHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------------HHHHHHHH
Confidence 1111110 00 01134456666555432 334699999999984 23677888
Q ss_pred HHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEe
Q 014798 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 359 ~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v 398 (418)
..|+. ....+++|++|+.++.|.+++++ |. ..+.+
T Consensus 140 K~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F 174 (584)
T PRK14952 140 KIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPF 174 (584)
T ss_pred HHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEe
Confidence 88874 34568888888888999999988 64 45666
No 124
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=3.4e-11 Score=130.70 Aligned_cols=147 Identities=18% Similarity=0.271 Sum_probs=104.0
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeee-------
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS------- 294 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~------- 294 (418)
.++..+.+|++++|++++++.|...+..-+ .+.++||+||+|+|||++|+++|+.+.+....
T Consensus 7 ~~kyRP~~f~~liGq~~i~~~L~~~l~~~r-----------l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C 75 (620)
T PRK14948 7 HHKYRPQRFDELVGQEAIATTLKNALISNR-----------IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC 75 (620)
T ss_pred HHHhCCCcHhhccChHHHHHHHHHHHHcCC-----------CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC
Confidence 356678899999999999999888877422 23479999999999999999999988652110
Q ss_pred eehh---hHH----------HHhhhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHH
Q 014798 295 ISGS---EFV----------EMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (418)
Q Consensus 295 vs~s---efv----------e~~vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~L 357 (418)
-.|. .+. +.....+...+|++++.+.. ....||+|||+|.+. ....+.|
T Consensus 76 g~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~naL 141 (620)
T PRK14948 76 GKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAFNAL 141 (620)
T ss_pred cccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------------HHHHHHH
Confidence 0111 110 00112345678888877753 234699999999984 2356788
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEe
Q 014798 358 LTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 358 L~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v 398 (418)
|..++. ....+++|++|+.++.+-+++++ |+. .+.+
T Consensus 142 LK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f 177 (620)
T PRK14948 142 LKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDF 177 (620)
T ss_pred HHHHhc--CCcCeEEEEEeCChhhhhHHHHh--hee-EEEe
Confidence 888884 34557888888888888899987 763 4566
No 125
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.28 E-value=7e-12 Score=126.63 Aligned_cols=155 Identities=25% Similarity=0.402 Sum_probs=97.7
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-------CCCeee--ee
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFS--IS 296 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-------~~pfi~--vs 296 (418)
.++.|++|+|++++++.+.-.+- .+. ..++||.||||||||++||++|+-+ +.++-. +.
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~---~~~---------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI---DPG---------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh---ccC---------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 46789999999999987764221 011 1269999999999999999999877 332211 11
Q ss_pred hh-hH---------------HHH--------hhhc---------chhHH-HHHHHHHHhCCCeEEEEcCCcccccccCCC
Q 014798 297 GS-EF---------------VEM--------FVGV---------GASRV-RDLFKKAKENAPCIVFVDEIDAVGRQRGTG 342 (418)
Q Consensus 297 ~s-ef---------------ve~--------~vg~---------~~~~v-r~lF~~A~~~aP~IIfIDEIDal~~~r~~~ 342 (418)
+. +. ++. .+|. +.... ...+..| ...++|+|||+.+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A---~~GiL~lDEInrl~~----- 142 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARA---NRGYLYIDEVNLLED----- 142 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEc---CCCeEEecChHhCCH-----
Confidence 10 00 000 1110 00000 0111111 124999999999842
Q ss_pred CCCCChHHHHHHHHHHHHhcCCC-----------CCCCeEEEEEeCCCC-CcchhhhCCCccceEEEecCch----HHHH
Q 014798 343 IGGGNDEREQTLNQLLTEMDGFE-----------GNTGIIVIAATNRAD-ILDSALLRPGRFDRQVKHVSLS----LMLW 406 (418)
Q Consensus 343 ~~~~~~e~~~~L~~LL~emdg~~-----------~~~~ViVIatTN~~~-~LD~ALlRpGRFdr~I~v~~lP----~R~~ 406 (418)
.++..|++.|+.-. ....+++++|+|..+ .+.++++. ||...+.+ ++| +|.+
T Consensus 143 ---------~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v-~~~~~~~e~~~ 210 (334)
T PRK13407 143 ---------HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEV-RSPRDVETRVE 210 (334)
T ss_pred ---------HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEc-CCCCcHHHHHH
Confidence 34555555554321 234689999999655 68999999 99999999 767 8888
Q ss_pred HHHHhh
Q 014798 407 FLKTHS 412 (418)
Q Consensus 407 IL~~~l 412 (418)
|++...
T Consensus 211 il~~~~ 216 (334)
T PRK13407 211 VIRRRD 216 (334)
T ss_pred HHHHhh
Confidence 998753
No 126
>PRK08727 hypothetical protein; Validated
Probab=99.28 E-value=4.1e-11 Score=115.06 Aligned_cols=153 Identities=20% Similarity=0.241 Sum_probs=96.1
Q ss_pred CCCCcccccccCchH-HHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhh
Q 014798 224 PNTGVTFDDVAGVDE-AKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (418)
Q Consensus 224 ~~~~~~f~dV~G~de-~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~se 299 (418)
..+..+|++.++..+ ....+.... .. .....++|+||+|||||+|++|++.++ +....+++..+
T Consensus 12 ~~~~~~f~~f~~~~~n~~~~~~~~~---~~---------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 12 YPSDQRFDSYIAAPDGLLAQLQALA---AG---------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CCCcCChhhccCCcHHHHHHHHHHH---hc---------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 345678999876544 222222211 11 122359999999999999999997664 66777888776
Q ss_pred HHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC-C
Q 014798 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN-R 378 (418)
Q Consensus 300 fve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN-~ 378 (418)
+... ..+.++... ...+|+|||+|.+..+ .+.+..+..++..... .+..+|+|+| .
T Consensus 80 ~~~~--------~~~~~~~l~--~~dlLiIDDi~~l~~~---------~~~~~~lf~l~n~~~~----~~~~vI~ts~~~ 136 (233)
T PRK08727 80 AAGR--------LRDALEALE--GRSLVALDGLESIAGQ---------REDEVALFDFHNRARA----AGITLLYTARQM 136 (233)
T ss_pred hhhh--------HHHHHHHHh--cCCEEEEeCcccccCC---------hHHHHHHHHHHHHHHH----cCCeEEEECCCC
Confidence 5432 223444332 3469999999988532 2234455566655431 2344566555 5
Q ss_pred CCCc---chhhhCCCcc--ceEEEecCch---HHHHHHHHhhcc
Q 014798 379 ADIL---DSALLRPGRF--DRQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 379 ~~~L---D~ALlRpGRF--dr~I~v~~lP---~R~~IL~~~l~~ 414 (418)
|..+ +++|.+ || ...+.+ +.| +|.+|++.++..
T Consensus 137 p~~l~~~~~dL~S--Rl~~~~~~~l-~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 137 PDGLALVLPDLRS--RLAQCIRIGL-PVLDDVARAAVLRERAQR 177 (233)
T ss_pred hhhhhhhhHHHHH--HHhcCceEEe-cCCCHHHHHHHHHHHHHH
Confidence 6554 789998 87 445666 555 999999986643
No 127
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.27 E-value=7.2e-11 Score=113.90 Aligned_cols=160 Identities=21% Similarity=0.371 Sum_probs=110.9
Q ss_pred cCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhh
Q 014798 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~se 299 (418)
.....+.+++++|.+++|+.+.+..+.+-... +..++||+|+.|||||+++||+..++ |..++.|...+
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~--------pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQGL--------PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCC--------CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 34457999999999999999998776543332 35689999999999999999998866 77888888777
Q ss_pred HHHHhhhcchhHHHHHHHHHHh-CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCC--CCCCCeEEEEEe
Q 014798 300 FVEMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--EGNTGIIVIAAT 376 (418)
Q Consensus 300 fve~~vg~~~~~vr~lF~~A~~-~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~--~~~~~ViVIatT 376 (418)
+.. +.++++..+. ..+-|||+||+. + ++.+.....|-..+||- ...++|++.||+
T Consensus 91 L~~---------l~~l~~~l~~~~~kFIlf~DDLs-F------------e~~d~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 91 LGD---------LPELLDLLRDRPYKFILFCDDLS-F------------EEGDTEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred hcc---------HHHHHHHHhcCCCCEEEEecCCC-C------------CCCcHHHHHHHHHhcCccccCCCcEEEEEec
Confidence 643 4455655543 345799999862 1 11122334555555553 235679999999
Q ss_pred CCCCCcchhhh---------------------CCCccceEEEecCch---HHHHHHHHhhc
Q 014798 377 NRADILDSALL---------------------RPGRFDRQVKHVSLS---LMLWFLKTHSQ 413 (418)
Q Consensus 377 N~~~~LD~ALl---------------------RpGRFdr~I~v~~lP---~R~~IL~~~l~ 413 (418)
||...+.+... =..||...|.+ ..| +-.+|++.++.
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F-~~~~q~~YL~IV~~~~~ 208 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSF-YPPDQEEYLAIVRHYAE 208 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEe-cCCCHHHHHHHHHHHHH
Confidence 97543322111 11399999999 666 66777777764
No 128
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.27 E-value=4.1e-11 Score=129.42 Aligned_cols=152 Identities=19% Similarity=0.244 Sum_probs=106.8
Q ss_pred ccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeee----
Q 014798 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI---- 295 (418)
Q Consensus 220 ~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~v---- 295 (418)
...+++.+.+|+||+|++.+++.|...+..- +.|..+||+||+|+|||++|+++|+.+.+.....
T Consensus 13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~~g-----------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~ 81 (598)
T PRK09111 13 VLARKYRPQTFDDLIGQEAMVRTLTNAFETG-----------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGP 81 (598)
T ss_pred hHHhhhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCC
Confidence 4556778899999999999999988877632 3455899999999999999999999886432111
Q ss_pred ---------ehhhHHHH----h------hhcchhHHHHHHHHHHhC----CCeEEEEcCCcccccccCCCCCCCChHHHH
Q 014798 296 ---------SGSEFVEM----F------VGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (418)
Q Consensus 296 ---------s~sefve~----~------vg~~~~~vr~lF~~A~~~----aP~IIfIDEIDal~~~r~~~~~~~~~e~~~ 352 (418)
+|..+.+. + ...+...+|++++.+... ...||+|||+|.+. ..
T Consensus 82 ~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------------~~ 147 (598)
T PRK09111 82 TIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------------TA 147 (598)
T ss_pred ccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------HH
Confidence 12222110 0 012345788888776532 35699999999984 23
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 353 ~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
..|.||..|+.. .+.+++|++|+.++.+.+.+++ |+ ..+.+ ..+
T Consensus 148 a~naLLKtLEeP--p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f-~~l 191 (598)
T PRK09111 148 AFNALLKTLEEP--PPHVKFIFATTEIRKVPVTVLS--RC-QRFDL-RRI 191 (598)
T ss_pred HHHHHHHHHHhC--CCCeEEEEEeCChhhhhHHHHh--he-eEEEe-cCC
Confidence 567788888743 3457777788888888888887 76 35667 444
No 129
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.26 E-value=3.9e-11 Score=120.63 Aligned_cols=116 Identities=34% Similarity=0.457 Sum_probs=83.8
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhhcchhHHHH--------------HHHHHHhCCCeEEEEcC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRD--------------LFKKAKENAPCIVFVDE 331 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg~~~~~vr~--------------lF~~A~~~aP~IIfIDE 331 (418)
++||.||||||||++|+++|..++.+|+.+.|......-...|...... +|.... +|+++||
T Consensus 45 ~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DE 120 (329)
T COG0714 45 HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLDE 120 (329)
T ss_pred CEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEec
Confidence 6999999999999999999999999999999997653321111111111 111111 4999999
Q ss_pred CcccccccCCCCCCCChHHHHHHHHHHHHhcC----------CCCCCCeEEEEEeC-----CCCCcchhhhCCCccceEE
Q 014798 332 IDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG----------FEGNTGIIVIAATN-----RADILDSALLRPGRFDRQV 396 (418)
Q Consensus 332 IDal~~~r~~~~~~~~~e~~~~L~~LL~emdg----------~~~~~~ViVIatTN-----~~~~LD~ALlRpGRFdr~I 396 (418)
|+...+ .+.+.|+..|+. +.-...++||+|+| ....|++|+++ ||...+
T Consensus 121 Inra~p--------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~ 184 (329)
T COG0714 121 INRAPP--------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRI 184 (329)
T ss_pred cccCCH--------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEE
Confidence 988742 345555555544 33456799999999 45578999999 998889
Q ss_pred EecCch
Q 014798 397 KHVSLS 402 (418)
Q Consensus 397 ~v~~lP 402 (418)
.+ ++|
T Consensus 185 ~v-~yp 189 (329)
T COG0714 185 YV-DYP 189 (329)
T ss_pred ec-CCC
Confidence 99 998
No 130
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.26 E-value=4.4e-12 Score=111.05 Aligned_cols=113 Identities=36% Similarity=0.431 Sum_probs=70.2
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH--Hhhhcchh------HHHHHHHHHHhCCCeEEEEcCCccccc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE--MFVGVGAS------RVRDLFKKAKENAPCIVFVDEIDAVGR 337 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve--~~vg~~~~------~vr~lF~~A~~~aP~IIfIDEIDal~~ 337 (418)
+|+|+||||||||++|+.+|..++.+++.++++...+ .+.|.-.. .....+.++.. .+++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a~- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRAP- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccCC-
Confidence 4899999999999999999999999999998886432 22221110 00001111111 46899999998873
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhc-----CC--C-CCC------CeEEEEEeCCCC----CcchhhhCCCcc
Q 014798 338 QRGTGIGGGNDEREQTLNQLLTEMD-----GF--E-GNT------GIIVIAATNRAD----ILDSALLRPGRF 392 (418)
Q Consensus 338 ~r~~~~~~~~~e~~~~L~~LL~emd-----g~--~-~~~------~ViVIatTN~~~----~LD~ALlRpGRF 392 (418)
.+....++.++..-. +. . ... ++.+|+|+|..+ .++++|++ ||
T Consensus 79 ----------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 79 ----------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ----------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 233334444443210 00 0 011 489999999988 89999999 87
No 131
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.26 E-value=4.1e-11 Score=125.72 Aligned_cols=151 Identities=21% Similarity=0.277 Sum_probs=101.4
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC--------e
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------F 292 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p--------f 292 (418)
..++..+.+|+||+|++.+++.+...+..- +.|..+||+||||+|||++|+++|+.+... .
T Consensus 7 ~~~kyRP~~~~diiGq~~~v~~L~~~i~~~-----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c 75 (451)
T PRK06305 7 SSRKYRPQTFSEILGQDAVVAVLKNALRFN-----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPC 75 (451)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCC
Confidence 345667899999999999999888877632 234579999999999999999999987432 0
Q ss_pred -eeeehhhHHHH-------hhh---cchhHHHHHHHHHH----hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHH
Q 014798 293 -FSISGSEFVEM-------FVG---VGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (418)
Q Consensus 293 -i~vs~sefve~-------~vg---~~~~~vr~lF~~A~----~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~L 357 (418)
...+|..+... +.| .+...++++.+... .....||+|||+|.+.. ...+.|
T Consensus 76 ~~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~--------------~~~n~L 141 (451)
T PRK06305 76 NQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK--------------EAFNSL 141 (451)
T ss_pred cccHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH--------------HHHHHH
Confidence 01112211100 011 12244555444332 24567999999998842 246778
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 358 LTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 358 L~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
+..++.. .+.+++|++||.+..|.+++++ |+. .+.+ ..+
T Consensus 142 Lk~lEep--~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f-~~l 180 (451)
T PRK06305 142 LKTLEEP--PQHVKFFLATTEIHKIPGTILS--RCQ-KMHL-KRI 180 (451)
T ss_pred HHHhhcC--CCCceEEEEeCChHhcchHHHH--hce-EEeC-CCC
Confidence 8888753 3467788888888899999988 764 5667 444
No 132
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.26 E-value=6.1e-11 Score=132.96 Aligned_cols=160 Identities=24% Similarity=0.363 Sum_probs=104.3
Q ss_pred ccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCC-ceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH---
Q 014798 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKG-VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM--- 303 (418)
Q Consensus 231 ~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~g-VLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~--- 303 (418)
+.|+|++++.+.+.+.+...+..-.+ ...|.+ +||+||||||||.+|+++|..+ ...++.+++++|.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~----~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLED----PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCC----CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 46889999999888877653221110 123555 7999999999999999999988 458899999998754
Q ss_pred ---------hhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC---------
Q 014798 304 ---------FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------- 365 (418)
Q Consensus 304 ---------~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~--------- 365 (418)
|+|.... ..+.+..+++.++||+|||||.+. + ...+.|+..+|...
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~-----------~---~v~~~Llq~ld~g~l~d~~Gr~v 705 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAH-----------P---DVLELFYQVFDKGVMEDGEGREI 705 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcC-----------H---HHHHHHHHHhhcceeecCCCcEE
Confidence 3333221 123444566778999999998763 2 34455555554321
Q ss_pred CCCCeEEEEEeCCCC-----------------------------CcchhhhCCCccceEEEecCch--HHHHHHHHhhc
Q 014798 366 GNTGIIVIAATNRAD-----------------------------ILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHSQ 413 (418)
Q Consensus 366 ~~~~ViVIatTN~~~-----------------------------~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l~ 413 (418)
.-.+.++|+|||... .+.|+++. |++ .|.+-++. +-.+|++.++.
T Consensus 706 d~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 706 DFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred eccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 014589999999421 13455666 887 56662333 66667666654
No 133
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=3e-11 Score=124.68 Aligned_cols=148 Identities=17% Similarity=0.240 Sum_probs=98.6
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCe-e------
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-F------ 293 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf-i------ 293 (418)
..++..+.+|++|+|++.+++.+...++.- +.|..+||+||||+|||++|+++|+++...- .
T Consensus 6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~-----------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~ 74 (397)
T PRK14955 6 IARKYRPKKFADITAQEHITRTIQNSLRMG-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL 74 (397)
T ss_pred HHHhcCCCcHhhccChHHHHHHHHHHHHhC-----------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence 345677899999999999999888777632 3445799999999999999999999886521 0
Q ss_pred ---------eeehhhHHH-------Hhhh---cchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHH
Q 014798 294 ---------SISGSEFVE-------MFVG---VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDER 350 (418)
Q Consensus 294 ---------~vs~sefve-------~~vg---~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~ 350 (418)
.-+|..+.. .+.+ .+...++++.+.+.. ....|++|||+|.+..
T Consensus 75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~------------- 141 (397)
T PRK14955 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI------------- 141 (397)
T ss_pred ccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH-------------
Confidence 001111110 0111 123567776666532 2346999999999842
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEe
Q 014798 351 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 351 ~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v 398 (418)
...+.|+..++.. .+..++|++|+.+..+-+++.+ |.. .+.+
T Consensus 142 -~~~~~LLk~LEep--~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f 183 (397)
T PRK14955 142 -AAFNAFLKTLEEP--PPHAIFIFATTELHKIPATIAS--RCQ-RFNF 183 (397)
T ss_pred -HHHHHHHHHHhcC--CCCeEEEEEeCChHHhHHHHHH--HHH-Hhhc
Confidence 2456777777633 3456677777777888888887 654 4556
No 134
>PRK05642 DNA replication initiation factor; Validated
Probab=99.25 E-value=7.9e-11 Score=113.22 Aligned_cols=160 Identities=17% Similarity=0.192 Sum_probs=97.0
Q ss_pred cCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhh
Q 014798 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~se 299 (418)
...+..+|++.+... .....+.++.+.... +.....+++|+||+|||||+|++|+++++ +..+++++..+
T Consensus 11 ~~~~~~tfdnF~~~~--~~~a~~~~~~~~~~~-----~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~ 83 (234)
T PRK05642 11 RLRDDATFANYYPGA--NAAALGYVERLCEAD-----AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE 83 (234)
T ss_pred CCCCcccccccCcCC--hHHHHHHHHHHhhcc-----ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence 345678899987322 122333333321110 11123578999999999999999998764 67889999988
Q ss_pred HHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014798 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (418)
Q Consensus 300 fve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~ 379 (418)
+.... .++.+..... .+++|||++.+..+ +..+..+..+++.+ ..+...++++++..|
T Consensus 84 ~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~---------~~~~~~Lf~l~n~~---~~~g~~ilits~~~p 141 (234)
T PRK05642 84 LLDRG--------PELLDNLEQY--ELVCLDDLDVIAGK---------ADWEEALFHLFNRL---RDSGRRLLLAASKSP 141 (234)
T ss_pred HHhhh--------HHHHHhhhhC--CEEEEechhhhcCC---------hHHHHHHHHHHHHH---HhcCCEEEEeCCCCH
Confidence 76531 1223333222 58999999987432 22344455555543 233345566665555
Q ss_pred CC---cchhhhCCCccc--eEEEecCch---HHHHHHHHhhcc
Q 014798 380 DI---LDSALLRPGRFD--RQVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 380 ~~---LD~ALlRpGRFd--r~I~v~~lP---~R~~IL~~~l~~ 414 (418)
.. ..+.|++ ||. ..+.+ ..| +|.+|++..+..
T Consensus 142 ~~l~~~~~~L~S--Rl~~gl~~~l-~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 142 RELPIKLPDLKS--RLTLALVFQM-RGLSDEDKLRALQLRASR 181 (234)
T ss_pred HHcCccCccHHH--HHhcCeeeec-CCCCHHHHHHHHHHHHHH
Confidence 43 3688888 874 45555 444 899998865543
No 135
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.24 E-value=5.9e-11 Score=127.54 Aligned_cols=161 Identities=20% Similarity=0.240 Sum_probs=108.0
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC-------eee
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFS 294 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi~ 294 (418)
.++..+.+|+||+|++.+++.+...+..- +.+..+||+||+|+|||++|+++|+.+... +-.
T Consensus 7 ~~kyRP~~f~diiGqe~iv~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~ 75 (563)
T PRK06647 7 ATKRRPRDFNSLEGQDFVVETLKHSIESN-----------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE 75 (563)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc
Confidence 35667889999999999999888877631 234579999999999999999999988542 111
Q ss_pred e-ehhhHHHH-------hhh---cchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHH
Q 014798 295 I-SGSEFVEM-------FVG---VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (418)
Q Consensus 295 v-s~sefve~-------~vg---~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~ 359 (418)
+ +|..+.+. +-| .+...+|++.+.+.. ....|++|||+|.+. ....+.||.
T Consensus 76 C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~naLLK 141 (563)
T PRK06647 76 CSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNALLK 141 (563)
T ss_pred chHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHHHHH
Confidence 1 12221110 011 223456666654432 345699999999883 235778888
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHHhh
Q 014798 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKTHS 412 (418)
Q Consensus 360 emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l 412 (418)
.++. ....+++|++|+.++.|.+++++ |+. .+.+.+++ +..+.++..+
T Consensus 142 ~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~ 191 (563)
T PRK06647 142 TIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVC 191 (563)
T ss_pred hhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHH
Confidence 8874 34567888888888889999988 765 46662333 4444554433
No 136
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=1e-10 Score=124.56 Aligned_cols=152 Identities=20% Similarity=0.279 Sum_probs=102.8
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCC-------Cee
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFF 293 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~-------pfi 293 (418)
..+++.+.+|+||+|++.+++.+...++.- +.|..+||+||+|+|||++|+++|+++.. |..
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~g-----------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~ 72 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDNN-----------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCD 72 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 345678899999999999999888877532 24456899999999999999999998732 111
Q ss_pred e-eehhhHHHH-----hh-----hcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHH
Q 014798 294 S-ISGSEFVEM-----FV-----GVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (418)
Q Consensus 294 ~-vs~sefve~-----~v-----g~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL 358 (418)
. -+|..+.+. +. ..+...+|++.+.+.. ....|++|||+|.+. ....+.||
T Consensus 73 ~C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------------~~A~NALL 138 (535)
T PRK08451 73 TCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------------KEAFNALL 138 (535)
T ss_pred ccHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHHHHHH
Confidence 0 011111100 00 1134567777765432 223599999999984 34567788
Q ss_pred HHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 359 ~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
..|+.. ...+.+|.+|+.+..|.+++++ |. ..+.+.+++
T Consensus 139 K~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls 177 (535)
T PRK08451 139 KTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIP 177 (535)
T ss_pred HHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCC
Confidence 888754 3456777778888999999998 75 466773333
No 137
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.22 E-value=1.2e-10 Score=130.31 Aligned_cols=163 Identities=22% Similarity=0.312 Sum_probs=107.1
Q ss_pred ccccCchHHHHHHHHHHHHhcCchhhhhcCCccCC-CceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH---
Q 014798 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK-GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM--- 303 (418)
Q Consensus 231 ~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~-gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~--- 303 (418)
+.|+|++++.+.+.+.+...+..-. ....|. .+||+||+|||||++|+++|..+ +.+++.+++++|.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK----NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc----CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 4688999999999887765322100 011233 47899999999999999999987 468999999987542
Q ss_pred --hhhc-----chhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC---------CC
Q 014798 304 --FVGV-----GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------GN 367 (418)
Q Consensus 304 --~vg~-----~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~---------~~ 367 (418)
+.|. +......+.+..+.+..+||+|||+|.+. ....+.|+..+|... .-
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~--------------~~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAH--------------PDIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCC--------------HHHHHHHHHHhccCceecCCCcEEec
Confidence 2221 11122345566666666999999999873 235556666665321 12
Q ss_pred CCeEEEEEeCCCCC-------------------------------------cchhhhCCCccceEEEecCch--HHHHHH
Q 014798 368 TGIIVIAATNRADI-------------------------------------LDSALLRPGRFDRQVKHVSLS--LMLWFL 408 (418)
Q Consensus 368 ~~ViVIatTN~~~~-------------------------------------LD~ALlRpGRFdr~I~v~~lP--~R~~IL 408 (418)
.+.++|+|||.... +.|.++. |+|..+.+-++. +-.+|+
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv 728 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIA 728 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHH
Confidence 46899999984211 1234555 999988884444 667777
Q ss_pred HHhhc
Q 014798 409 KTHSQ 413 (418)
Q Consensus 409 ~~~l~ 413 (418)
+..+.
T Consensus 729 ~~~l~ 733 (821)
T CHL00095 729 EIMLK 733 (821)
T ss_pred HHHHH
Confidence 66654
No 138
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.20 E-value=1.9e-10 Score=129.22 Aligned_cols=163 Identities=23% Similarity=0.288 Sum_probs=102.3
Q ss_pred cccccCchHHHHHHHHHHHHhcCchhhhhcCCccC-CCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH--
Q 014798 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIP-KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-- 303 (418)
Q Consensus 230 f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p-~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~-- 303 (418)
.+.|+|++.+.+.+.+.+...+..-.. ...| ..++|+||+|||||++|+++|..+ +.++++++++++.+.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~----~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSD----PNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccC----CCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 346889999999998888764321100 0123 258999999999999999999876 568999999998653
Q ss_pred ---hhhcc-----hhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCC--C-------C
Q 014798 304 ---FVGVG-----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--E-------G 366 (418)
Q Consensus 304 ---~vg~~-----~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~--~-------~ 366 (418)
++|.. ...-..+.+..+....+||+|||+|.+. .. ..+.|+..++.. . .
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~-----------~~---v~~~Ll~ile~g~l~d~~gr~vd 708 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAH-----------PD---VFNILLQVLDDGRLTDGQGRTVD 708 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCC-----------HH---HHHHHHHHHhhCceecCCceEEe
Confidence 22211 1111122233344445899999999873 23 344455544321 1 1
Q ss_pred CCCeEEEEEeCCCC-------------------------CcchhhhCCCccceEEEecCch---HHHHHHHHhhc
Q 014798 367 NTGIIVIAATNRAD-------------------------ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQ 413 (418)
Q Consensus 367 ~~~ViVIatTN~~~-------------------------~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~ 413 (418)
-.+.++|+|||... .+.|+|+. |+|..+.+ ..+ +-.+|++.++.
T Consensus 709 ~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF-~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 709 FRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVF-HPLGEQHIASIAQIQLQ 780 (857)
T ss_pred ecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEec-CCCCHHHHHHHHHHHHH
Confidence 13467899999621 23457777 99988877 444 55555555543
No 139
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.20 E-value=1.4e-10 Score=130.27 Aligned_cols=163 Identities=23% Similarity=0.293 Sum_probs=104.9
Q ss_pred ccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH----
Q 014798 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM---- 303 (418)
Q Consensus 231 ~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~---- 303 (418)
+.|+|++++.+.+.+.+...+..-.. ..++...+||+||+|||||++|+++|..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~---~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSD---PNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCC---CCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 46899999999999888764321000 01122358899999999999999999977 578999999987543
Q ss_pred -hhhcc-----hhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC---------CCC
Q 014798 304 -FVGVG-----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------GNT 368 (418)
Q Consensus 304 -~vg~~-----~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~---------~~~ 368 (418)
++|.. ...-..+....+.+..+||+|||||.+. .. +.+.|+..++.-. .-.
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~-----------~~---v~~~Ll~~l~~g~l~d~~g~~vd~r 707 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAH-----------PD---VFNVLLQVLDDGRLTDGQGRTVDFR 707 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCC-----------HH---HHHHHHHHHhcCceecCCCeEEecC
Confidence 22211 1111234444555666899999999873 22 4455555553211 123
Q ss_pred CeEEEEEeCCCCC-------------------------cchhhhCCCccceEEEecCch---HHHHHHHHhhc
Q 014798 369 GIIVIAATNRADI-------------------------LDSALLRPGRFDRQVKHVSLS---LMLWFLKTHSQ 413 (418)
Q Consensus 369 ~ViVIatTN~~~~-------------------------LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l~ 413 (418)
+.+||+|||.... +.|.|+. |+|..+.+ ..+ ...+|+...+.
T Consensus 708 n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF-~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 708 NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVF-HPLGREQIARIVEIQLG 777 (852)
T ss_pred CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEec-CCcCHHHHHHHHHHHHH
Confidence 5789999996211 2345555 99988888 444 66677766553
No 140
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.19 E-value=1.6e-10 Score=127.12 Aligned_cols=161 Identities=19% Similarity=0.222 Sum_probs=105.2
Q ss_pred cccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCC-ceEECCCCChHHHHHHHHHHhc-------C---CCeeeeeh
Q 014798 230 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKG-VLLVGPPGTGKTLLAKAIAGEA-------G---VPFFSISG 297 (418)
Q Consensus 230 f~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~g-VLL~GPPGTGKT~LArAIA~el-------~---~pfi~vs~ 297 (418)
.+.|.|.++..++|..++.. +... .|.+ ++|+|+||||||++++.+..++ + +.+++|+|
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgs---------gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQS---------GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcC---------CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 46677888888888777765 3321 1334 4699999999999999997765 2 55789999
Q ss_pred hhHHHH----------hhhc-------chhHHHHHHHHHH--hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHH
Q 014798 298 SEFVEM----------FVGV-------GASRVRDLFKKAK--ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (418)
Q Consensus 298 sefve~----------~vg~-------~~~~vr~lF~~A~--~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL 358 (418)
..+... +.+. ....+..+|.... ....+||+|||||.+... .+..|..|+
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLF 893 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLF 893 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHHHHH
Confidence 543221 1111 1134455665542 234579999999999642 245666666
Q ss_pred HHhcCCCCCCCeEEEEEeCC---CCCcchhhhCCCccce-EEEecCch--HHHHHHHHhhcc
Q 014798 359 TEMDGFEGNTGIIVIAATNR---ADILDSALLRPGRFDR-QVKHVSLS--LMLWFLKTHSQY 414 (418)
Q Consensus 359 ~emdg~~~~~~ViVIatTN~---~~~LD~ALlRpGRFdr-~I~v~~lP--~R~~IL~~~l~~ 414 (418)
.... .....++||+.+|. ++.|++.+.+ ||.. .+.++++. +..+||+..+..
T Consensus 894 R~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 894 DWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred HHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHh
Confidence 6543 23456899999985 5677888887 6643 35563444 888998877653
No 141
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.19 E-value=1.3e-10 Score=121.85 Aligned_cols=164 Identities=16% Similarity=0.255 Sum_probs=100.4
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-----CCCeeeeehhhHH
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEFV 301 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~vs~sefv 301 (418)
..+|++.+--+.....+..+......+. . ..++++|||++|||||+|++|+++++ +..++++++.+|.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~------~-~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPG------I-SYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcC------c-ccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 4789997743322222222222222221 1 12469999999999999999999854 5788999999998
Q ss_pred HHhhhcchh---HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014798 302 EMFVGVGAS---RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (418)
Q Consensus 302 e~~vg~~~~---~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~ 378 (418)
..+...-.. .+.+..+.. ..+++++|||++.+.. .+..+..+..++..+.. ..+ .+|.|+|.
T Consensus 184 ~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~---------k~~~~e~lf~l~N~~~~---~~k-~iIltsd~ 248 (450)
T PRK14087 184 RKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSY---------KEKTNEIFFTIFNNFIE---NDK-QLFFSSDK 248 (450)
T ss_pred HHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccC---------CHHHHHHHHHHHHHHHH---cCC-cEEEECCC
Confidence 776543221 222222222 3457999999998842 22334455555555432 222 35556554
Q ss_pred -CC---CcchhhhCCCccceEEEec-Cch---HHHHHHHHhhcc
Q 014798 379 -AD---ILDSALLRPGRFDRQVKHV-SLS---LMLWFLKTHSQY 414 (418)
Q Consensus 379 -~~---~LD~ALlRpGRFdr~I~v~-~lP---~R~~IL~~~l~~ 414 (418)
|+ .+++.|.+ ||...+.+. ..| +|.+|++.+++.
T Consensus 249 ~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~ 290 (450)
T PRK14087 249 SPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKN 290 (450)
T ss_pred CHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHh
Confidence 43 35788888 887555441 444 999999988865
No 142
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.19 E-value=2.5e-10 Score=124.01 Aligned_cols=164 Identities=22% Similarity=0.400 Sum_probs=99.8
Q ss_pred CCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc----------CCCeee
Q 014798 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 294 (418)
Q Consensus 225 ~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~ 294 (418)
..+.+|++++|++.+.+.+.+.+. .+ .+.+++|+||||||||++|+++++.. +.+|+.
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia---~~---------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA---SP---------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh---cC---------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 346789999999998887655442 21 13469999999999999999998654 467999
Q ss_pred eehhhHH-------HHhhhcchh----HHHHHHHH----------HHhCCCeEEEEcCCcccccccCCCCCCCChHHHHH
Q 014798 295 ISGSEFV-------EMFVGVGAS----RVRDLFKK----------AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (418)
Q Consensus 295 vs~sefv-------e~~vg~~~~----~vr~lF~~----------A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~ 353 (418)
++|..+. ..+.+.... ..+..++. .......+|||||++.+.. ..+..
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~-----------~~Q~~ 284 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP-----------LLQNK 284 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH-----------HHHHH
Confidence 9987641 111221110 01111110 0011245999999988842 23333
Q ss_pred HHHHHHHhc-----C-C-----------------CCCCCeEEEEE-eCCCCCcchhhhCCCccceEEEecCch--HHHHH
Q 014798 354 LNQLLTEMD-----G-F-----------------EGNTGIIVIAA-TNRADILDSALLRPGRFDRQVKHVSLS--LMLWF 407 (418)
Q Consensus 354 L~~LL~emd-----g-~-----------------~~~~~ViVIat-TN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~I 407 (418)
+..++..-. + + .....+++|++ |+.++.++++|++ ||.. +.++++. +..+|
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~~-i~~~pls~edi~~I 361 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCAE-VFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--ceeE-EEeCCCCHHHHHHH
Confidence 444443210 0 0 01123566654 4568889999988 8874 4563544 88888
Q ss_pred HHHhhcc
Q 014798 408 LKTHSQY 414 (418)
Q Consensus 408 L~~~l~~ 414 (418)
++.++.+
T Consensus 362 l~~~a~~ 368 (615)
T TIGR02903 362 VLNAAEK 368 (615)
T ss_pred HHHHHHH
Confidence 8877654
No 143
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.18 E-value=1.5e-10 Score=120.53 Aligned_cols=152 Identities=25% Similarity=0.397 Sum_probs=87.7
Q ss_pred cccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC-------eeeee----hh
Q 014798 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSIS----GS 298 (418)
Q Consensus 230 f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi~vs----~s 298 (418)
++++.+.++..+.+... +... ++++|+||||||||++|+++|..+... ++.++ ..
T Consensus 174 l~d~~i~e~~le~l~~~---L~~~-----------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKR---LTIK-----------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHH---HhcC-----------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 56666666655554433 3332 379999999999999999999887431 22222 23
Q ss_pred hHHHHhh--hcchh----HHHHHHHHHHhC--CCeEEEEcCCcccccccCCC--CC-CCChHHHHHHHH--HHHH--hcC
Q 014798 299 EFVEMFV--GVGAS----RVRDLFKKAKEN--APCIVFVDEIDAVGRQRGTG--IG-GGNDEREQTLNQ--LLTE--MDG 363 (418)
Q Consensus 299 efve~~v--g~~~~----~vr~lF~~A~~~--aP~IIfIDEIDal~~~r~~~--~~-~~~~e~~~~L~~--LL~e--mdg 363 (418)
+|++.+. +.+-. .+.++...|..+ .|+++|||||+.....+--+ .. -..+.+.+.... ...+ .+.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~ 319 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEER 319 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccccc
Confidence 4443331 11211 234455666653 57999999999875433110 00 000000000000 0001 123
Q ss_pred CCCCCCeEEEEEeCCCC----CcchhhhCCCccceEEEe
Q 014798 364 FEGNTGIIVIAATNRAD----ILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 364 ~~~~~~ViVIatTN~~~----~LD~ALlRpGRFdr~I~v 398 (418)
|....++.+|+|.|..| .+|.||+| ||.. |++
T Consensus 320 f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i 355 (459)
T PRK11331 320 FYVPENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDI 355 (459)
T ss_pred ccCCCCeEEEEecCccccchhhccHHHHh--hhhe-EEe
Confidence 55567899999999887 79999999 9954 545
No 144
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=4.5e-11 Score=118.31 Aligned_cols=130 Identities=28% Similarity=0.443 Sum_probs=84.9
Q ss_pred ccCchHHHHHHHHHHHH----hcCchhhhhcCCccC-CCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH-hhh
Q 014798 233 VAGVDEAKQDFMEVVEF----LKKPERFTAIGARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVG 306 (418)
Q Consensus 233 V~G~de~k~eL~e~v~~----l~~p~~~~~lG~~~p-~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~-~vg 306 (418)
|+|++.+|+.+.-.|-. +.+.+. .-..... .++||.||.|||||+||+.+|+.+++||...+++.+.+. |+|
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~--~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKED--NDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCC--CCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 67888888766543322 221110 0011121 369999999999999999999999999999999998874 888
Q ss_pred cchhHH-HHHHHHHH----hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCC
Q 014798 307 VGASRV-RDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 364 (418)
Q Consensus 307 ~~~~~v-r~lF~~A~----~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~ 364 (418)
+....+ -.+++.|. +....||||||||.+.++..+..-..+-..+-+...||..++|-
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 765544 34443331 12346999999999998764432222222344556677777653
No 145
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=1.8e-10 Score=124.53 Aligned_cols=147 Identities=18% Similarity=0.271 Sum_probs=98.8
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCee-----ee-
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF-----SI- 295 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi-----~v- 295 (418)
.+++.+.+|+||+|++.+++.|...+..-+ .+..+||+||+|+|||++|+++|+.+.+..- .+
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~-----------i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAEGR-----------VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHhCC-----------CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 466788999999999999998887776422 2346899999999999999999998754221 00
Q ss_pred ---ehhhHHHH----h------hhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHH
Q 014798 296 ---SGSEFVEM----F------VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (418)
Q Consensus 296 ---s~sefve~----~------vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL 358 (418)
.|..+.+. + ...+...+|++.+.+.. ....||+|||+|.+. ...++.||
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------------~~a~naLL 141 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------------TAAFNALL 141 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------------HHHHHHHH
Confidence 11111100 0 01223456666654432 234699999999884 23567788
Q ss_pred HHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEe
Q 014798 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 359 ~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v 398 (418)
..++... ..+++|++++..+.+.+.+.+ |+. .+.+
T Consensus 142 k~LEepp--~~tv~Il~t~~~~kll~tI~S--R~~-~i~f 176 (585)
T PRK14950 142 KTLEEPP--PHAIFILATTEVHKVPATILS--RCQ-RFDF 176 (585)
T ss_pred HHHhcCC--CCeEEEEEeCChhhhhHHHHh--ccc-eeeC
Confidence 8887543 456777777778888888877 664 4666
No 146
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.18 E-value=3.9e-11 Score=121.79 Aligned_cols=159 Identities=21% Similarity=0.368 Sum_probs=98.6
Q ss_pred CCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-------CCCeeeee-
Q 014798 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSIS- 296 (418)
Q Consensus 225 ~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-------~~pfi~vs- 296 (418)
...+.|++|+|++++|..+...+ .+|. ..|+||.||+|||||++||++++.+ +.||....
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~---~~p~---------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNV---IDPK---------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhc---cCCC---------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 45689999999999998775533 2332 2479999999999999999997755 22443100
Q ss_pred -----hhhHHHHh-------------------hhcchhH------HHHHHHHHH---------hCCCeEEEEcCCccccc
Q 014798 297 -----GSEFVEMF-------------------VGVGASR------VRDLFKKAK---------ENAPCIVFVDEIDAVGR 337 (418)
Q Consensus 297 -----~sefve~~-------------------vg~~~~~------vr~lF~~A~---------~~aP~IIfIDEIDal~~ 337 (418)
+++..... .+..+.+ +...|.... +....++|+|||+.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 00000000 0111111 111121111 11235999999999853
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcC---------C--CCCCCeEEEEEeCCCC-CcchhhhCCCccceEEEecCch---
Q 014798 338 QRGTGIGGGNDEREQTLNQLLTEMDG---------F--EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVKHVSLS--- 402 (418)
Q Consensus 338 ~r~~~~~~~~~e~~~~L~~LL~emdg---------~--~~~~~ViVIatTN~~~-~LD~ALlRpGRFdr~I~v~~lP--- 402 (418)
. +...|+..|+. . ....++++|+|.|..+ .+.++|+. ||...+.+ +.|
T Consensus 159 ~--------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l-~~~~~~ 221 (350)
T CHL00081 159 H--------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEI-RTVKDP 221 (350)
T ss_pred H--------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeec-CCCCCh
Confidence 2 34445555532 1 1234688889888655 69999999 99999998 777
Q ss_pred -HHHHHHHHhh
Q 014798 403 -LMLWFLKTHS 412 (418)
Q Consensus 403 -~R~~IL~~~l 412 (418)
.|.+|++...
T Consensus 222 ~~e~~il~~~~ 232 (350)
T CHL00081 222 ELRVKIVEQRT 232 (350)
T ss_pred HHHHHHHHhhh
Confidence 7888888653
No 147
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=2.3e-10 Score=124.08 Aligned_cols=150 Identities=17% Similarity=0.253 Sum_probs=100.7
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCee--------
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF-------- 293 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi-------- 293 (418)
.++..+.+|++|+|++.+++.+...+..- +.+.++||+||+|||||++|+++|+.+.+.--
T Consensus 7 ~~kyRP~~f~eivGQe~i~~~L~~~i~~~-----------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 7 ARKYRPSKFADITAQEHITHTIQNSLRMD-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 34567889999999999999888766532 34457999999999999999999998865210
Q ss_pred --------eeehhhHHH-------Hhhh---cchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHH
Q 014798 294 --------SISGSEFVE-------MFVG---VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDERE 351 (418)
Q Consensus 294 --------~vs~sefve-------~~vg---~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~ 351 (418)
.-+|..+.. .+.+ .+...+|++.+.+.. ....|++|||+|.+. .
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------------~ 141 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------------T 141 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------------H
Confidence 011222211 0111 124567777666632 334699999999984 2
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 352 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 352 ~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
...+.|+..++... ..+++|.+|+.++.|-+++.+ |. ..+.+ ..+
T Consensus 142 ~a~naLLK~LEePp--~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef-~~l 186 (620)
T PRK14954 142 AAFNAFLKTLEEPP--PHAIFIFATTELHKIPATIAS--RC-QRFNF-KRI 186 (620)
T ss_pred HHHHHHHHHHhCCC--CCeEEEEEeCChhhhhHHHHh--hc-eEEec-CCC
Confidence 34677888887533 346666677777888888887 55 35666 444
No 148
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.13 E-value=4.9e-11 Score=125.08 Aligned_cols=143 Identities=34% Similarity=0.532 Sum_probs=97.8
Q ss_pred CCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHH---hcCCCeeeeehhhHH
Q 014798 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFV 301 (418)
Q Consensus 225 ~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~---el~~pfi~vs~sefv 301 (418)
....+|+||+|.+.+..++.+.+......+ -.|||.|.+||||.++|++|-+ +.+.||+.+||..+-
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A~td----------stVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIAKTD----------STVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhhcCCC----------CcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 356899999999999999998888766554 3799999999999999999965 458899999999765
Q ss_pred HH-----hhhc------chhH--HHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHh--cCCCC
Q 014798 302 EM-----FVGV------GASR--VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM--DGFEG 366 (418)
Q Consensus 302 e~-----~vg~------~~~~--vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~em--dg~~~ 366 (418)
+. ++|. |+.+ -..+|+.|... .||+|||..+.. ..+..+...|++= ....+
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgempl-----------~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEMPL-----------PLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccCCH-----------HHHHHHHHHHhhceEEecCC
Confidence 54 2332 2322 34577777544 899999988742 2333344444431 11111
Q ss_pred ----CCCeEEEEEeCCCCCcchhhhCCCccce
Q 014798 367 ----NTGIIVIAATNRADILDSALLRPGRFDR 394 (418)
Q Consensus 367 ----~~~ViVIatTN~~~~LD~ALlRpGRFdr 394 (418)
.-+|.||||||+. |.+++ ..|+|-.
T Consensus 375 t~~~~vDVRIIAATN~n--L~~~i-~~G~FRe 403 (560)
T COG3829 375 TKPIPVDVRIIAATNRN--LEKMI-AEGTFRE 403 (560)
T ss_pred CCceeeEEEEEeccCcC--HHHHH-hcCcchh
Confidence 2359999999963 33333 3366643
No 149
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.12 E-value=2e-10 Score=105.29 Aligned_cols=136 Identities=28% Similarity=0.439 Sum_probs=85.6
Q ss_pred ccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH-----h
Q 014798 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-----F 304 (418)
Q Consensus 233 V~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~-----~ 304 (418)
++|.+...+++.+.+..+.... ..|||+|++||||+++|++|-... +.||+.++|+.+.+. +
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~----------~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSD----------LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTST----------S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCC----------CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 5688888888888887755443 379999999999999999997754 679999999876433 3
Q ss_pred hhcch-------hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhc--CCCC----CCCeE
Q 014798 305 VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----NTGII 371 (418)
Q Consensus 305 vg~~~-------~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emd--g~~~----~~~Vi 371 (418)
.|... .....+|++|... ++||||||.+.. ..+..|.++|+.-. .... .-++.
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDLPP-----------ELQAKLLRVLEEGKFTRLGSDKPVPVDVR 136 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS-H-----------HHHHHHHHHHHHSEEECCTSSSEEE--EE
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhhHH-----------HHHHHHHHHHhhchhccccccccccccce
Confidence 44321 1234678887655 999999999953 33445555555311 0111 23699
Q ss_pred EEEEeCCCCCcchhhhCCCccceE
Q 014798 372 VIAATNRADILDSALLRPGRFDRQ 395 (418)
Q Consensus 372 VIatTN~~~~LD~ALlRpGRFdr~ 395 (418)
+|++|+. .|... ...|+|...
T Consensus 137 iI~st~~--~l~~~-v~~g~fr~d 157 (168)
T PF00158_consen 137 IIASTSK--DLEEL-VEQGRFRED 157 (168)
T ss_dssp EEEEESS---HHHH-HHTTSS-HH
T ss_pred EEeecCc--CHHHH-HHcCCChHH
Confidence 9999995 34433 333666543
No 150
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.12 E-value=6.6e-11 Score=108.84 Aligned_cols=110 Identities=35% Similarity=0.431 Sum_probs=73.9
Q ss_pred CceEECCCCChHHHHHHHHHHhcCC----CeeeeehhhHHHHhhhcchhHHHHHHHHH----HhCCCeEEEEcCCccccc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGV----PFFSISGSEFVEMFVGVGASRVRDLFKKA----KENAPCIVFVDEIDAVGR 337 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~----pfi~vs~sefve~~vg~~~~~vr~lF~~A----~~~aP~IIfIDEIDal~~ 337 (418)
.++|+||+|||||.+|+++|..+.. +++.++++++.+. +.....+..++..+ ......||||||||++.+
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 5899999999999999999999996 9999999998761 11112222222211 001112999999999987
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCC---------CCCCeEEEEEeCCCC
Q 014798 338 QRGTGIGGGNDEREQTLNQLLTEMDGFE---------GNTGIIVIAATNRAD 380 (418)
Q Consensus 338 ~r~~~~~~~~~e~~~~L~~LL~emdg~~---------~~~~ViVIatTN~~~ 380 (418)
.. ..+.+-..+.+.+.||..+|+-. .-.++++|+|+|--.
T Consensus 83 ~~---~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 83 SN---SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp TT---TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cc---cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 51 22334455667788888775421 124699999999544
No 151
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.12 E-value=1.7e-10 Score=125.86 Aligned_cols=150 Identities=22% Similarity=0.316 Sum_probs=98.6
Q ss_pred ccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc--------------------
Q 014798 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------------------- 288 (418)
Q Consensus 229 ~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-------------------- 288 (418)
.|.+|+|++.++..+.-. ..++. ..+|||.|+||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~---av~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLN---AVDPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHH---hhCCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 588999999988765432 22222 1269999999999999999999876
Q ss_pred ---------------CCCeeeeehhhHHHHhhhcch--hHH--------HHHHHHHHhCCCeEEEEcCCcccccccCCCC
Q 014798 289 ---------------GVPFFSISGSEFVEMFVGVGA--SRV--------RDLFKKAKENAPCIVFVDEIDAVGRQRGTGI 343 (418)
Q Consensus 289 ---------------~~pfi~vs~sefve~~vg~~~--~~v--------r~lF~~A~~~aP~IIfIDEIDal~~~r~~~~ 343 (418)
..||+.+.++...+.++|.-. ..+ ..++..| ...|+|||||+.+..
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~~------ 140 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLDD------ 140 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCCH------
Confidence 356776665544344443210 000 1112222 224999999999842
Q ss_pred CCCChHHHHHHHHHHHHhcCC-----------CCCCCeEEEEEeCCC-CCcchhhhCCCccceEEEecCch----HHHHH
Q 014798 344 GGGNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRA-DILDSALLRPGRFDRQVKHVSLS----LMLWF 407 (418)
Q Consensus 344 ~~~~~e~~~~L~~LL~emdg~-----------~~~~~ViVIatTN~~-~~LD~ALlRpGRFdr~I~v~~lP----~R~~I 407 (418)
.+++.|+..|+.- ....++.+|+|+|.. ..+.++|+. ||+..+.+ +.| +|.+|
T Consensus 141 --------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v-~~~~~~~~~~~i 209 (633)
T TIGR02442 141 --------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDV-AAPRDPEERVEI 209 (633)
T ss_pred --------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEc-cCCCchHHHHHH
Confidence 3455666666421 112458999999954 368899999 99999988 555 67777
Q ss_pred HHH
Q 014798 408 LKT 410 (418)
Q Consensus 408 L~~ 410 (418)
++.
T Consensus 210 l~~ 212 (633)
T TIGR02442 210 IRR 212 (633)
T ss_pred HHH
Confidence 764
No 152
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=8.5e-10 Score=119.79 Aligned_cols=148 Identities=20% Similarity=0.288 Sum_probs=101.1
Q ss_pred cccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCee-------
Q 014798 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF------- 293 (418)
Q Consensus 221 ~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi------- 293 (418)
+.+++.+.+|+||+|++.+++.+...+..- +.|..+|||||+|+|||++|+++|..+.+.-.
T Consensus 7 ~~~kyRP~~f~~viGq~~~~~~L~~~i~~~-----------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~C 75 (614)
T PRK14971 7 SARKYRPSTFESVVGQEALTTTLKNAIATN-----------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEAC 75 (614)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 345677899999999999999888877632 24557999999999999999999998753210
Q ss_pred --eeehhhHHHH-------hhh---cchhHHHHHHHHHHhC----CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHH
Q 014798 294 --SISGSEFVEM-------FVG---VGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (418)
Q Consensus 294 --~vs~sefve~-------~vg---~~~~~vr~lF~~A~~~----aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~L 357 (418)
.-+|..+.+. +-+ .+...++++.+++... ...|++|||+|.+. ....+.|
T Consensus 76 g~C~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------------~~a~naL 141 (614)
T PRK14971 76 NECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------------QAAFNAF 141 (614)
T ss_pred CcchHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------------HHHHHHH
Confidence 0112222111 001 1234577777666432 24599999999983 2356778
Q ss_pred HHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEe
Q 014798 358 LTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 358 L~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v 398 (418)
+..|+.. ...+++|++|+.+..|-+++++ |+. .+.+
T Consensus 142 LK~LEep--p~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f 177 (614)
T PRK14971 142 LKTLEEP--PSYAIFILATTEKHKILPTILS--RCQ-IFDF 177 (614)
T ss_pred HHHHhCC--CCCeEEEEEeCCchhchHHHHh--hhh-eeec
Confidence 8888753 3456777777777888899988 663 4666
No 153
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.09 E-value=8e-10 Score=112.29 Aligned_cols=83 Identities=22% Similarity=0.319 Sum_probs=63.3
Q ss_pred cc-cccCchHHHHHHHHHHHHhcCchhhhhcCCc-cCCCceEECCCCChHHHHHHHHHHhcCC-------Ceeeeeh---
Q 014798 230 FD-DVAGVDEAKQDFMEVVEFLKKPERFTAIGAR-IPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSISG--- 297 (418)
Q Consensus 230 f~-dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~-~p~gVLL~GPPGTGKT~LArAIA~el~~-------pfi~vs~--- 297 (418)
|+ ++.|++++++++.+.+..... |.. ..+.++|+||||||||+||+++|++++. |++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~-------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~ 121 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQ-------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGE 121 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHh-------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCC
Confidence 55 899999998877766555332 212 2356899999999999999999999976 9999988
Q ss_pred -hhHHHHhhhcchhHHHHHHHHH
Q 014798 298 -SEFVEMFVGVGASRVRDLFKKA 319 (418)
Q Consensus 298 -sefve~~vg~~~~~vr~lF~~A 319 (418)
+.+.+..++.....+|+.|.+.
T Consensus 122 ~sp~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 122 ESPMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred CCCCccCCcccCCHHHHHHHHHH
Confidence 7777776676677776666553
No 154
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.09 E-value=4e-10 Score=114.09 Aligned_cols=151 Identities=23% Similarity=0.376 Sum_probs=94.6
Q ss_pred ccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-------CCCee--------
Q 014798 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFF-------- 293 (418)
Q Consensus 229 ~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-------~~pfi-------- 293 (418)
.|..|+|++++|..+.-.+ -+|. ..+++|.|+||+|||++++++++.. +.|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~---~~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNV---IDPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHh---cCCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 5889999999998764322 2222 2369999999999999999999866 33332
Q ss_pred -eeehhhH----------------HHHhhhcchh------HHH------------HHHHHHHhCCCeEEEEcCCcccccc
Q 014798 294 -SISGSEF----------------VEMFVGVGAS------RVR------------DLFKKAKENAPCIVFVDEIDAVGRQ 338 (418)
Q Consensus 294 -~vs~sef----------------ve~~vg~~~~------~vr------------~lF~~A~~~aP~IIfIDEIDal~~~ 338 (418)
..+|... .++-.+..+. .+. .++.+| ...++||||++.+..
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L~~- 145 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLLED- 145 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhCCH-
Confidence 1111110 1110111111 111 112222 235999999999842
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCC-----------CCCCCeEEEEEeCCCC-CcchhhhCCCccceEEEecCch----
Q 014798 339 RGTGIGGGNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVKHVSLS---- 402 (418)
Q Consensus 339 r~~~~~~~~~e~~~~L~~LL~emdg~-----------~~~~~ViVIatTN~~~-~LD~ALlRpGRFdr~I~v~~lP---- 402 (418)
.+...|+..|+.- .....+++|+|.|..+ .+.++|+. ||..++.+ ++|
T Consensus 146 -------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l-~~p~~~e 209 (337)
T TIGR02030 146 -------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEI-RTVRDVE 209 (337)
T ss_pred -------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEEC-CCCCCHH
Confidence 2444455555321 1134588899988655 69999999 99999999 777
Q ss_pred HHHHHHHHh
Q 014798 403 LMLWFLKTH 411 (418)
Q Consensus 403 ~R~~IL~~~ 411 (418)
+|.+|++..
T Consensus 210 er~eIL~~~ 218 (337)
T TIGR02030 210 LRVEIVERR 218 (337)
T ss_pred HHHHHHHhh
Confidence 788888874
No 155
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.08 E-value=1.7e-09 Score=110.78 Aligned_cols=155 Identities=18% Similarity=0.179 Sum_probs=103.1
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC-------e------
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------F------ 292 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------f------ 292 (418)
.+.++++|+|++++++.+.+.+..- +.|..+||+||+|+||+++|.++|+.+-.. +
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~ 82 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG-----------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTS 82 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccc
Confidence 5678999999999999998877643 345589999999999999999999876211 0
Q ss_pred -----eeeehhhHHHH------hh-----h--------cchhHHHHHHHHHH----hCCCeEEEEcCCcccccccCCCCC
Q 014798 293 -----FSISGSEFVEM------FV-----G--------VGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIG 344 (418)
Q Consensus 293 -----i~vs~sefve~------~v-----g--------~~~~~vr~lF~~A~----~~aP~IIfIDEIDal~~~r~~~~~ 344 (418)
..-+|..+... ++ + .+...+|++.+.+. ...|.|++|||+|.+.
T Consensus 83 l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~-------- 154 (365)
T PRK07471 83 LAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN-------- 154 (365)
T ss_pred ccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------
Confidence 00011111000 00 1 12345666665543 3467899999999983
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHHH
Q 014798 345 GGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLKT 410 (418)
Q Consensus 345 ~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~~ 410 (418)
....|.||..++. ...+.++|.+|+.++.+.+.+++ |+ ..+.+++++ +-.++++.
T Consensus 155 ------~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~ 211 (365)
T PRK07471 155 ------ANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAA 211 (365)
T ss_pred ------HHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHH
Confidence 3467778888874 33457888899999999998887 76 456673333 44444443
No 156
>PRK06620 hypothetical protein; Validated
Probab=99.07 E-value=5.9e-10 Score=105.96 Aligned_cols=144 Identities=15% Similarity=0.198 Sum_probs=86.5
Q ss_pred cCCCCcccccccCch---HHHHHHHHHHHHhcCchhhhhcCCcc-CCCceEECCCCChHHHHHHHHHHhcCCCeeeeehh
Q 014798 223 EPNTGVTFDDVAGVD---EAKQDFMEVVEFLKKPERFTAIGARI-PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (418)
Q Consensus 223 ~~~~~~~f~dV~G~d---e~k~eL~e~v~~l~~p~~~~~lG~~~-p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~s 298 (418)
...+..+|++++-.+ .+...+.++.+ .+ +..+ -+.++||||||||||+|++++++..+..++ +..
T Consensus 8 ~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~---~~------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~ 76 (214)
T PRK06620 8 TTSSKYHPDEFIVSSSNDQAYNIIKNWQC---GF------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDI 76 (214)
T ss_pred CCCCCCCchhhEecccHHHHHHHHHHHHH---cc------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEc--chh
Confidence 345678899977544 34444444332 11 1111 146999999999999999999998875332 221
Q ss_pred hHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014798 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (418)
Q Consensus 299 efve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~ 378 (418)
.+.+ +.+ ...++++|||||.+. +..+..+++.+. .+...++|+++..
T Consensus 77 ~~~~-----------~~~-----~~~d~lliDdi~~~~--------------~~~lf~l~N~~~---e~g~~ilits~~~ 123 (214)
T PRK06620 77 FFNE-----------EIL-----EKYNAFIIEDIENWQ--------------EPALLHIFNIIN---EKQKYLLLTSSDK 123 (214)
T ss_pred hhch-----------hHH-----hcCCEEEEeccccch--------------HHHHHHHHHHHH---hcCCEEEEEcCCC
Confidence 1110 111 123699999998541 123444544443 2344677777665
Q ss_pred CCC--cchhhhCCCccce--EEEecCch---HHHHHHHHhhcc
Q 014798 379 ADI--LDSALLRPGRFDR--QVKHVSLS---LMLWFLKTHSQY 414 (418)
Q Consensus 379 ~~~--LD~ALlRpGRFdr--~I~v~~lP---~R~~IL~~~l~~ 414 (418)
|.. + ++|++ |+.. .+.+ ..| +|.++++.+++.
T Consensus 124 p~~l~l-~~L~S--Rl~~gl~~~l-~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 124 SRNFTL-PDLSS--RIKSVLSILL-NSPDDELIKILIFKHFSI 162 (214)
T ss_pred ccccch-HHHHH--HHhCCceEee-CCCCHHHHHHHHHHHHHH
Confidence 554 5 78887 8863 4666 666 888888877654
No 157
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.06 E-value=3.5e-10 Score=119.60 Aligned_cols=139 Identities=23% Similarity=0.372 Sum_probs=107.2
Q ss_pred cCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC-------eeee
Q 014798 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSI 295 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi~v 295 (418)
.++.+.+|+|++|++.+...|...+..-+-.+ ++|+.||.|||||++||.+|+.+++. +-.+
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~~ri~h-----------AYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALENGRIAH-----------AYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHhCcchh-----------hhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 45678899999999999999999888655554 79999999999999999999987543 1111
Q ss_pred -ehh--------hHHHH--hhhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHH
Q 014798 296 -SGS--------EFVEM--FVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 360 (418)
Q Consensus 296 -s~s--------efve~--~vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~e 360 (418)
.|. |.++. -...+...+|++.+.+.. ..+.|.+|||++.+. .+..|.||..
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------------~~afNALLKT 142 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------------KQAFNALLKT 142 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------HHHHHHHhcc
Confidence 111 11111 223466788998888753 345699999999884 4578999999
Q ss_pred hcCCCCCCCeEEEEEeCCCCCcchhhhC
Q 014798 361 MDGFEGNTGIIVIAATNRADILDSALLR 388 (418)
Q Consensus 361 mdg~~~~~~ViVIatTN~~~~LD~ALlR 388 (418)
++ ++...|++|.+|..++.+++.+++
T Consensus 143 LE--EPP~hV~FIlATTe~~Kip~TIlS 168 (515)
T COG2812 143 LE--EPPSHVKFILATTEPQKIPNTILS 168 (515)
T ss_pred cc--cCccCeEEEEecCCcCcCchhhhh
Confidence 98 556679999999999999999997
No 158
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=5.4e-10 Score=111.51 Aligned_cols=69 Identities=30% Similarity=0.575 Sum_probs=56.1
Q ss_pred ccCchHHHHHHHHHHHH-hcCchhhhhcCCc-cCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 014798 233 VAGVDEAKQDFMEVVEF-LKKPERFTAIGAR-IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (418)
Q Consensus 233 V~G~de~k~eL~e~v~~-l~~p~~~~~lG~~-~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv 301 (418)
|+|++++|+.+.-.+.. +++.+.-..+.-. .|+++|+.||.|+|||-+||.+|+-++.||+.|.++.|.
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfT 87 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFT 87 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeee
Confidence 78999999988776654 5555544444333 589999999999999999999999999999999877663
No 159
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.06 E-value=1.8e-09 Score=106.55 Aligned_cols=139 Identities=24% Similarity=0.348 Sum_probs=96.7
Q ss_pred cccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcC----------------------
Q 014798 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---------------------- 289 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~---------------------- 289 (418)
++++.++...++...+.... +.|..+||+||||+|||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 56677777777666555322 2233699999999999999999999885
Q ss_pred --CCeeeeehhhHHHHhhhcchhHHHHHHHHHHhC----CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcC
Q 014798 290 --VPFFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 363 (418)
Q Consensus 290 --~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~~----aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg 363 (418)
-.++.++.++-... ......++++-+..... ...||+|||+|.+. ....|.++..++.
T Consensus 72 ~~~d~lel~~s~~~~~--~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt--------------~~A~nallk~lEe 135 (325)
T COG0470 72 NHPDFLELNPSDLRKI--DIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT--------------EDAANALLKTLEE 135 (325)
T ss_pred CCCceEEecccccCCC--cchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh--------------HHHHHHHHHHhcc
Confidence 35666666653221 12344566655554333 35799999999995 3567888888874
Q ss_pred CCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 364 FEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 364 ~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
. ..+..+|.+||.+..+-+.+++ |. ..+.+ ..|
T Consensus 136 p--~~~~~~il~~n~~~~il~tI~S--Rc-~~i~f-~~~ 168 (325)
T COG0470 136 P--PKNTRFILITNDPSKILPTIRS--RC-QRIRF-KPP 168 (325)
T ss_pred C--CCCeEEEEEcCChhhccchhhh--cc-eeeec-CCc
Confidence 4 4457899999999998888888 66 34556 445
No 160
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.06 E-value=1.7e-09 Score=99.84 Aligned_cols=128 Identities=20% Similarity=0.239 Sum_probs=82.5
Q ss_pred cCCCceEECCCCChHHHHHHHHHHhcCCC-------e-eeeehhhHHHH------h-----hhcchhHHHHHHHHHHh--
Q 014798 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------F-FSISGSEFVEM------F-----VGVGASRVRDLFKKAKE-- 321 (418)
Q Consensus 263 ~p~gVLL~GPPGTGKT~LArAIA~el~~p-------f-i~vs~sefve~------~-----vg~~~~~vr~lF~~A~~-- 321 (418)
.|..+||+||+|+|||++|+++|.++... . ...+|..+... + ...+...++++.+.+..
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 45679999999999999999999987432 0 00111111000 0 01233566666766643
Q ss_pred --CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEec
Q 014798 322 --NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHV 399 (418)
Q Consensus 322 --~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~ 399 (418)
....||+|||+|.+.. ...+.||..|+.. .+...+|++||.++.+.+++.+ |+. .+.+
T Consensus 93 ~~~~~kviiide~~~l~~--------------~~~~~Ll~~le~~--~~~~~~il~~~~~~~l~~~i~s--r~~-~~~~- 152 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNE--------------AAANALLKTLEEP--PPNTLFILITPSPEKLLPTIRS--RCQ-VLPF- 152 (188)
T ss_pred ccCCeEEEEEechhhhCH--------------HHHHHHHHHhcCC--CCCeEEEEEECChHhChHHHHh--hcE-EeeC-
Confidence 3456999999999842 3466788888753 3456677778778999999998 663 6777
Q ss_pred Cch---HHHHHHHH
Q 014798 400 SLS---LMLWFLKT 410 (418)
Q Consensus 400 ~lP---~R~~IL~~ 410 (418)
..| +..++++.
T Consensus 153 ~~~~~~~~~~~l~~ 166 (188)
T TIGR00678 153 PPLSEEALLQWLIR 166 (188)
T ss_pred CCCCHHHHHHHHHH
Confidence 555 44555543
No 161
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.06 E-value=1.4e-09 Score=112.02 Aligned_cols=169 Identities=18% Similarity=0.246 Sum_probs=108.9
Q ss_pred cCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-----CCCeeeeeh
Q 014798 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISG 297 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~vs~ 297 (418)
.-.+..+|++++.-+.-.....-....-..|.. .-..++||||+|+|||+|++|+++++ +..+++++.
T Consensus 79 ~l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~-------~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s 151 (408)
T COG0593 79 GLNPKYTFDNFVVGPSNRLAYAAAKAVAENPGG-------AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS 151 (408)
T ss_pred cCCCCCchhheeeCCchHHHHHHHHHHHhccCC-------cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH
Confidence 345678999987655444433333333333321 12369999999999999999998876 446899999
Q ss_pred hhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 298 sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
++|...++......-.+-|+.-. .-.+++||||+.+..+. ..+..+-.+++.+ ..+.+-+|+.+..
T Consensus 152 e~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~---------~~qeefFh~FN~l---~~~~kqIvltsdr 217 (408)
T COG0593 152 EDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE---------RTQEEFFHTFNAL---LENGKQIVLTSDR 217 (408)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh---------hHHHHHHHHHHHH---HhcCCEEEEEcCC
Confidence 99998887665444445566655 44699999999996442 2233333333333 2233345555545
Q ss_pred CCCC---cchhhhCCCccceEEEec-Cch---HHHHHHHHhhcc
Q 014798 378 RADI---LDSALLRPGRFDRQVKHV-SLS---LMLWFLKTHSQY 414 (418)
Q Consensus 378 ~~~~---LD~ALlRpGRFdr~I~v~-~lP---~R~~IL~~~l~~ 414 (418)
.|.. +++.|.+ ||...+.+. ..| .|..||+..+..
T Consensus 218 ~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~ 259 (408)
T COG0593 218 PPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAED 259 (408)
T ss_pred CchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHh
Confidence 5554 5688888 887755441 555 899999886544
No 162
>PRK08181 transposase; Validated
Probab=99.05 E-value=2.1e-09 Score=105.68 Aligned_cols=126 Identities=21% Similarity=0.310 Sum_probs=81.6
Q ss_pred CcccccccCchHHHHHHHHHH-HHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHH
Q 014798 227 GVTFDDVAGVDEAKQDFMEVV-EFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v-~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve 302 (418)
.+.|+...+.+.....-...+ +|+... .+++|+||||||||+||.|+|.++ |..+++++..++++
T Consensus 79 ~fd~~~~~~~~~~~~~~L~~~~~~~~~~-----------~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~ 147 (269)
T PRK08181 79 SFDFEAVPMVSKAQVMAIAAGDSWLAKG-----------ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQ 147 (269)
T ss_pred hCCccCCCCCCHHHHHHHHHHHHHHhcC-----------ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHH
Confidence 355555556554444333444 355433 379999999999999999998755 78899999999888
Q ss_pred Hhhhc-chhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014798 303 MFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (418)
Q Consensus 303 ~~vg~-~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~ 379 (418)
.+... ......+.+... ..+.+|+|||++.+.. ++.....+.+++....+ + --+|.|||.+
T Consensus 148 ~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~---------~~~~~~~Lf~lin~R~~---~--~s~IiTSN~~ 209 (269)
T PRK08181 148 KLQVARRELQLESAIAKL--DKFDLLILDDLAYVTK---------DQAETSVLFELISARYE---R--RSILITANQP 209 (269)
T ss_pred HHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccC---------CHHHHHHHHHHHHHHHh---C--CCEEEEcCCC
Confidence 65332 122334445443 3457999999987632 33445567777775432 1 2478888854
No 163
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.05 E-value=1e-09 Score=110.61 Aligned_cols=149 Identities=25% Similarity=0.325 Sum_probs=96.2
Q ss_pred ccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH--
Q 014798 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-- 303 (418)
Q Consensus 229 ~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~-- 303 (418)
.+++++|.+...+++.+.+..+.... .+|||+|++||||+++|++|.... +.||+.++|..+.+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~----------~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLD----------KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCC----------CCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 36789999999999999888765433 379999999999999999996543 579999999976322
Q ss_pred ---hhhcch-------hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC-------
Q 014798 304 ---FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG------- 366 (418)
Q Consensus 304 ---~vg~~~-------~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~------- 366 (418)
++|... ......|+.|. ..++||||||.+.. ..+..+..++..-. +..
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L~~-----------~~Q~~L~~~l~~~~-~~~~g~~~~~ 138 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATAPM-----------LVQEKLLRVIEYGE-LERVGGSQPL 138 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhCCH-----------HHHHHHHHHHhcCc-EEeCCCCcee
Confidence 222110 11123344443 35999999999953 22334444443211 111
Q ss_pred CCCeEEEEEeCCC-------CCcchhhhCCCcc-ceEEEecCchHH
Q 014798 367 NTGIIVIAATNRA-------DILDSALLRPGRF-DRQVKHVSLSLM 404 (418)
Q Consensus 367 ~~~ViVIatTN~~-------~~LD~ALlRpGRF-dr~I~v~~lP~R 404 (418)
..++.+|++|+.. ..+.+.|.. || ...|.+|++-+|
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR 182 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRER 182 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhh
Confidence 1258899988853 345566666 66 456777555544
No 164
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.05 E-value=2.8e-10 Score=107.48 Aligned_cols=118 Identities=29% Similarity=0.458 Sum_probs=68.2
Q ss_pred ccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc--------------------
Q 014798 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------------------- 288 (418)
Q Consensus 229 ~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-------------------- 288 (418)
.|+||.|++++|..++-... | ..++||+||||||||++|+++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 48999999999998876544 1 2389999999999999999998743
Q ss_pred --------CCCeeeeehhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHH
Q 014798 289 --------GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 360 (418)
Q Consensus 289 --------~~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~e 360 (418)
..||....-+.-....+|.+..-.-..+..|. -.|+|+||+-.+ ...+++.|+.-
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh---~GVLflDE~~ef--------------~~~vld~Lr~p 129 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAH---RGVLFLDELNEF--------------DRSVLDALRQP 129 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGT---TSEEEECETTTS---------------HHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhc---CCEEEechhhhc--------------CHHHHHHHHHH
Confidence 11333332222222233332211111222232 249999999665 24577777777
Q ss_pred hcCCC-----------CCCCeEEEEEeC
Q 014798 361 MDGFE-----------GNTGIIVIAATN 377 (418)
Q Consensus 361 mdg~~-----------~~~~ViVIatTN 377 (418)
|+.-. -..++++|+|+|
T Consensus 130 le~g~v~i~R~~~~~~~Pa~f~lv~a~N 157 (206)
T PF01078_consen 130 LEDGEVTISRAGGSVTYPARFLLVAAMN 157 (206)
T ss_dssp HHHSBEEEEETTEEEEEB--EEEEEEE-
T ss_pred HHCCeEEEEECCceEEEecccEEEEEec
Confidence 75321 123589999998
No 165
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.1e-09 Score=114.25 Aligned_cols=132 Identities=26% Similarity=0.425 Sum_probs=98.5
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeee-ehhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCC
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI-SGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGI 343 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~v-s~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~ 343 (418)
..+||+||||+|||.||-.+|...+.||+.+ +..+++...-...-..++..|+.|++..-+||++|+|+.+..--.
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vp--- 615 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVP--- 615 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccc---
Confidence 4699999999999999999999999999975 554544332223335789999999999999999999999864322
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCC-CeEEEEEeCCCCCcch-hhhCCCccceEEEecCch
Q 014798 344 GGGNDEREQTLNQLLTEMDGFEGNT-GIIVIAATNRADILDS-ALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 344 ~~~~~e~~~~L~~LL~emdg~~~~~-~ViVIatTN~~~~LD~-ALlRpGRFdr~I~v~~lP 402 (418)
-+......++..|+..+....+.. +.+|++||.+.+.|.+ .++. .|+..+.+|.+-
T Consensus 616 -IGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 616 -IGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLT 673 (744)
T ss_pred -cCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccC
Confidence 234556677888888887665543 4778888887766544 3444 789999986554
No 166
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=3.5e-09 Score=107.86 Aligned_cols=154 Identities=17% Similarity=0.207 Sum_probs=101.6
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCC-------Ceeee---
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSI--- 295 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~-------pfi~v--- 295 (418)
.+..+++|+|++++++.+...+..-+ .|..+||+||+|+|||++|+.+|..+.. |....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-----------l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~ 86 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-----------LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPD 86 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-----------CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCC
Confidence 46789999999999999888776333 3447999999999999999999998744 11110
Q ss_pred -ehhhHHHH-------h--h-------------hcchhHHHHHHHHHH----hCCCeEEEEcCCcccccccCCCCCCCCh
Q 014798 296 -SGSEFVEM-------F--V-------------GVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGND 348 (418)
Q Consensus 296 -s~sefve~-------~--v-------------g~~~~~vr~lF~~A~----~~aP~IIfIDEIDal~~~r~~~~~~~~~ 348 (418)
.|...... + + ..+...+|++-+... .....|++|||+|.+.
T Consensus 87 ~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~------------ 154 (351)
T PRK09112 87 PASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN------------ 154 (351)
T ss_pred CCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC------------
Confidence 11111000 0 0 011234555444332 2345799999999984
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch--HHHHHHH
Q 014798 349 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS--LMLWFLK 409 (418)
Q Consensus 349 e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP--~R~~IL~ 409 (418)
....|.||..++.. ..+.++|..|+.++.+.+.+++ |+ ..+.+++++ +-.++++
T Consensus 155 --~~aanaLLk~LEEp--p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~ 210 (351)
T PRK09112 155 --RNAANAILKTLEEP--PARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALS 210 (351)
T ss_pred --HHHHHHHHHHHhcC--CCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHH
Confidence 33567788888753 3456677777889999999988 87 578883333 4444444
No 167
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=1.6e-09 Score=108.19 Aligned_cols=139 Identities=18% Similarity=0.317 Sum_probs=97.7
Q ss_pred ccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCC--------CeeeeehhhH
Q 014798 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--------PFFSISGSEF 300 (418)
Q Consensus 229 ~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~--------pfi~vs~sef 300 (418)
+|+||+|++.+++++...+.. .+.|..+||+||+|+|||++|+++|+.+-+ .++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 699999999999998887642 234557899999999999999999997632 122222210
Q ss_pred HHHhhhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014798 301 VEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (418)
Q Consensus 301 ve~~vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatT 376 (418)
. ...+...+|++.+.+.. ....|++|||+|.+. ....|.||..++. +.+++++|.+|
T Consensus 70 -~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------------~~a~naLLK~LEe--pp~~t~~il~~ 130 (313)
T PRK05564 70 -K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------------EQAQNAFLKTIEE--PPKGVFIILLC 130 (313)
T ss_pred -C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEe
Confidence 0 01233457777765432 345699999999883 3457788888884 44567777777
Q ss_pred CCCCCcchhhhCCCccceEEEecCch
Q 014798 377 NRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 377 N~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
+.++.|-+.+++ |. ..+.+ ..|
T Consensus 131 ~~~~~ll~TI~S--Rc-~~~~~-~~~ 152 (313)
T PRK05564 131 ENLEQILDTIKS--RC-QIYKL-NRL 152 (313)
T ss_pred CChHhCcHHHHh--hc-eeeeC-CCc
Confidence 888999999998 66 36777 444
No 168
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.01 E-value=8.7e-10 Score=117.84 Aligned_cols=128 Identities=27% Similarity=0.410 Sum_probs=86.8
Q ss_pred cccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHh-----------cCCCeeeee
Q 014798 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE-----------AGVPFFSIS 296 (418)
Q Consensus 228 ~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e-----------l~~pfi~vs 296 (418)
.+|++++|.+...+++.+.+..+.... .+|||+|++||||+++|++|-.. .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~----------~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSS----------AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCC----------CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 579999999999999999887755443 27999999999999999999766 477999999
Q ss_pred hhhHHHH-----hhhc------chh--HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhc-
Q 014798 297 GSEFVEM-----FVGV------GAS--RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD- 362 (418)
Q Consensus 297 ~sefve~-----~vg~------~~~--~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emd- 362 (418)
|..+.+. ..|. ++. .-..+|+.|.. .+||||||+.+... .+..|..+|++-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~~-----------~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEMPLP-----------LQTRLLRVLEEKEV 351 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhCCHH-----------HHHHHHhhhhcCeE
Confidence 9976432 2231 110 11245666543 49999999998532 2333444443311
Q ss_pred -CCCC----CCCeEEEEEeCCC
Q 014798 363 -GFEG----NTGIIVIAATNRA 379 (418)
Q Consensus 363 -g~~~----~~~ViVIatTN~~ 379 (418)
.... ..++.+|++||..
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~ 373 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCD 373 (538)
T ss_pred EecCCCceeccceEEEEecCCC
Confidence 0011 2247899999854
No 169
>PRK08116 hypothetical protein; Validated
Probab=99.01 E-value=2.8e-09 Score=104.69 Aligned_cols=110 Identities=22% Similarity=0.366 Sum_probs=69.9
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHhhhc----chhHHHHHHHHHHhCCCeEEEEcCCcccc
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV----GASRVRDLFKKAKENAPCIVFVDEIDAVG 336 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~vg~----~~~~vr~lF~~A~~~aP~IIfIDEIDal~ 336 (418)
+.|++|+|+||||||+||.|+|+++ +.++++++.+++...+... ......++++... ...+|+|||+..-.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 3579999999999999999999975 8899999999987654321 1122233444332 33599999985421
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC-CC----cchhhhC
Q 014798 337 RQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA-DI----LDSALLR 388 (418)
Q Consensus 337 ~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~-~~----LD~ALlR 388 (418)
.++.....+.+++... . ..+..+|.|||.+ +. ++..+.+
T Consensus 192 ---------~t~~~~~~l~~iin~r---~-~~~~~~IiTsN~~~~eL~~~~~~ri~s 235 (268)
T PRK08116 192 ---------DTEWAREKVYNIIDSR---Y-RKGLPTIVTTNLSLEELKNQYGKRIYD 235 (268)
T ss_pred ---------CCHHHHHHHHHHHHHH---H-HCCCCEEEECCCCHHHHHHHHhHHHHH
Confidence 1233334444555443 2 2334688888854 33 4555655
No 170
>PRK12377 putative replication protein; Provisional
Probab=99.00 E-value=4.7e-09 Score=102.11 Aligned_cols=109 Identities=19% Similarity=0.264 Sum_probs=71.8
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHhhhcc--hhHHHHHHHHHHhCCCeEEEEcCCccccccc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVG--ASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~vg~~--~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r 339 (418)
.+++|+||||||||+||.|+|+++ +..+++++..++.+.+...- .....++++.. ....+|+|||++...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~--- 176 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR--- 176 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC---
Confidence 479999999999999999999887 77888999998887543211 11122344443 345799999997652
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC-----CcchhhhC
Q 014798 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD-----ILDSALLR 388 (418)
Q Consensus 340 ~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~-----~LD~ALlR 388 (418)
.++....++.+++..-.. ...-+|.|||... .++..+++
T Consensus 177 ------~s~~~~~~l~~ii~~R~~----~~~ptiitSNl~~~~l~~~~~~ri~d 220 (248)
T PRK12377 177 ------ETKNEQVVLNQIIDRRTA----SMRSVGMLTNLNHEAMSTLLGERVMD 220 (248)
T ss_pred ------CCHHHHHHHHHHHHHHHh----cCCCEEEEcCCCHHHHHHHhhHHHHH
Confidence 233345567777765431 2235788899532 34455555
No 171
>PRK06526 transposase; Provisional
Probab=98.99 E-value=2.4e-09 Score=104.48 Aligned_cols=126 Identities=23% Similarity=0.364 Sum_probs=78.8
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM 303 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~ 303 (418)
.+.|+...+.+...-.-....+|+..+. +++|+||||||||+||.+++.++ |..+.+++..++++.
T Consensus 72 ~fd~~~~~~~~~~~~~~l~~~~fi~~~~-----------nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~ 140 (254)
T PRK06526 72 EFDFDHQRSLKRDTIAHLGTLDFVTGKE-----------NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR 140 (254)
T ss_pred hccCccCCCcchHHHHHHhcCchhhcCc-----------eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH
Confidence 4556655555443322222334454433 79999999999999999998765 778888888888776
Q ss_pred hhhc-chhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014798 304 FVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (418)
Q Consensus 304 ~vg~-~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~ 379 (418)
.... ........+... ..+.+|+|||++.+.. +......+.+++....+ + -.+|.|||.+
T Consensus 141 l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~~---------~~~~~~~L~~li~~r~~---~--~s~IitSn~~ 201 (254)
T PRK06526 141 LAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIPF---------EPEAANLFFQLVSSRYE---R--ASLIVTSNKP 201 (254)
T ss_pred HHHHHhcCcHHHHHHHh--ccCCEEEEcccccCCC---------CHHHHHHHHHHHHHHHh---c--CCEEEEcCCC
Confidence 5321 111223333332 3467999999987632 33445567777765432 1 1377788854
No 172
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.99 E-value=5.3e-09 Score=112.64 Aligned_cols=166 Identities=22% Similarity=0.301 Sum_probs=109.9
Q ss_pred cccccccCCCCcccccccCchHHHHHHHHHHHHhcCc---hhhhhc-------------------CCccCCCceEECCCC
Q 014798 217 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKP---ERFTAI-------------------GARIPKGVLLVGPPG 274 (418)
Q Consensus 217 ~~~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p---~~~~~l-------------------G~~~p~gVLL~GPPG 274 (418)
..++|++++.+-.|.|+.|.+..-..+..++..+..- +++.++ +.+..+-+||+||||
T Consensus 257 h~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 257 HDKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred CcceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 4569999999999999999999999888877653211 111111 222236689999999
Q ss_pred ChHHHHHHHHHHhcCCCeeeeehhhHHHHhhhcchhHHHHHHHHHHh--------CCCeEEEEcCCcccccccCCCCCCC
Q 014798 275 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKE--------NAPCIVFVDEIDAVGRQRGTGIGGG 346 (418)
Q Consensus 275 TGKT~LArAIA~el~~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~--------~aP~IIfIDEIDal~~~r~~~~~~~ 346 (418)
-|||+||+-||+++|+.++.|++|+= .++..+++.+..|.+ ..|.+++|||||--.
T Consensus 337 lGKTTLAHViAkqaGYsVvEINASDe------Rt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~---------- 400 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQAGYSVVEINASDE------RTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP---------- 400 (877)
T ss_pred CChhHHHHHHHHhcCceEEEeccccc------ccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc----------
Confidence 99999999999999999999999983 344555555555533 468899999998753
Q ss_pred ChHHHHHHHHHHHH----hcCCCCC---------C---CeEEEEEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 347 NDEREQTLNQLLTE----MDGFEGN---------T---GIIVIAATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 347 ~~e~~~~L~~LL~e----mdg~~~~---------~---~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
...-.++..++.. ..|-... . .--||+.||.. .-|||+.---|...+.| ..|
T Consensus 401 -~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdL--YaPaLR~Lr~~A~ii~f-~~p 468 (877)
T KOG1969|consen 401 -RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDL--YAPALRPLRPFAEIIAF-VPP 468 (877)
T ss_pred -HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCc--cchhhhhcccceEEEEe-cCC
Confidence 2223344444441 1111110 0 14588999943 34666532247778888 444
No 173
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.99 E-value=1.6e-09 Score=109.29 Aligned_cols=146 Identities=22% Similarity=0.306 Sum_probs=89.6
Q ss_pred ccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH-----h
Q 014798 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-----F 304 (418)
Q Consensus 233 V~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~-----~ 304 (418)
++|.+...+++.+.+..+.... .+|||+|++||||+++|++|.... +.||+.++|..+.+. .
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~----------~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLD----------RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCC----------CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 4677888888888887765443 379999999999999999996544 679999999865322 2
Q ss_pred hhcc------h-hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhc--CC----CCCCCeE
Q 014798 305 VGVG------A-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GF----EGNTGII 371 (418)
Q Consensus 305 vg~~------~-~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emd--g~----~~~~~Vi 371 (418)
.|.. + .....+|+.|. ..+|||||||.+.. +.+..+..+|..-. .. ....++.
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATASL-----------LVQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhCCH-----------HHHHHHHHHHHcCcEEecCCCceeccceE
Confidence 2211 0 11122355443 35999999999853 23334444443211 00 1124588
Q ss_pred EEEEeCCC-------CCcchhhhCCCccc-eEEEecCchHH
Q 014798 372 VIAATNRA-------DILDSALLRPGRFD-RQVKHVSLSLM 404 (418)
Q Consensus 372 VIatTN~~-------~~LD~ALlRpGRFd-r~I~v~~lP~R 404 (418)
+|++||.. ..+.+.|.. |+. ..|.+|++-+|
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR 175 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRER 175 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhh
Confidence 99999853 234455555 553 35555444444
No 174
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=4.5e-09 Score=107.59 Aligned_cols=162 Identities=20% Similarity=0.315 Sum_probs=108.9
Q ss_pred cccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC-----eeeeehhhHHH
Q 014798 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----FFSISGSEFVE 302 (418)
Q Consensus 228 ~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-----fi~vs~sefve 302 (418)
..-+.+.+.++..+++..++...-+.. .|.+++++||||||||..++.++.++.-+ +++|+|....+
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~--------~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t 85 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGE--------RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRT 85 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCC--------CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCC
Confidence 344458899999998888766533222 35579999999999999999999988433 89999986543
Q ss_pred Hh---------------hhcchhH-HHHHHHHHH-hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC
Q 014798 303 MF---------------VGVGASR-VRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE 365 (418)
Q Consensus 303 ~~---------------vg~~~~~-vr~lF~~A~-~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~ 365 (418)
.+ .|..... ...+++... .....||++||+|.+..+.+ ..+.+|+...+..
T Consensus 86 ~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~- 153 (366)
T COG1474 86 PYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN- 153 (366)
T ss_pred HHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc-
Confidence 21 1111111 122222222 24567999999999975431 5788888776655
Q ss_pred CCCCeEEEEEeCCC---CCcchhhhCCCcc-ceEEEecCch--HHHHHHHHhh
Q 014798 366 GNTGIIVIAATNRA---DILDSALLRPGRF-DRQVKHVSLS--LMLWFLKTHS 412 (418)
Q Consensus 366 ~~~~ViVIatTN~~---~~LD~ALlRpGRF-dr~I~v~~lP--~R~~IL~~~l 412 (418)
..++.+|+.+|.. +.+|+.+.+ +| ...|.||++- +-.+|++..+
T Consensus 154 -~~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 154 -KVKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERV 203 (366)
T ss_pred -ceeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHH
Confidence 5678999999965 467888876 44 2346775555 6667766544
No 175
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.98 E-value=1.1e-09 Score=104.61 Aligned_cols=135 Identities=21% Similarity=0.323 Sum_probs=92.4
Q ss_pred ccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCC-----Ceee
Q 014798 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFFS 294 (418)
Q Consensus 220 ~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~-----pfi~ 294 (418)
.|++++.+..+.||+|.++..+.+.-+...-..| ++++.||||||||+-+.++|+++=. -+..
T Consensus 16 ~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP------------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLE 83 (333)
T KOG0991|consen 16 PWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMP------------NLIISGPPGTGKTTSILCLARELLGDSYKEAVLE 83 (333)
T ss_pred hHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCC------------ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhh
Confidence 4889999999999999999999887776655555 5999999999999999999998722 3455
Q ss_pred eehhhHHHHhhhcchhHHH---HHHHHHHhCC----CeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 014798 295 ISGSEFVEMFVGVGASRVR---DLFKKAKENA----PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (418)
Q Consensus 295 vs~sefve~~vg~~~~~vr---~lF~~A~~~a----P~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~ 367 (418)
+++|+ ..|...|| +.|.+-+-.- -.||++||.|.+. +..+|.+..-+ +-+..
T Consensus 84 LNASd------eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT-----------~gAQQAlRRtM---EiyS~- 142 (333)
T KOG0991|consen 84 LNASD------ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT-----------AGAQQALRRTM---EIYSN- 142 (333)
T ss_pred ccCcc------ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh-----------hHHHHHHHHHH---HHHcc-
Confidence 66655 22333444 3455544332 2499999999984 22344443333 32222
Q ss_pred CCeEEEEEeCCCCCcchhhhC
Q 014798 368 TGIIVIAATNRADILDSALLR 388 (418)
Q Consensus 368 ~~ViVIatTN~~~~LD~ALlR 388 (418)
...+..++|..+.+=+.+.+
T Consensus 143 -ttRFalaCN~s~KIiEPIQS 162 (333)
T KOG0991|consen 143 -TTRFALACNQSEKIIEPIQS 162 (333)
T ss_pred -cchhhhhhcchhhhhhhHHh
Confidence 24577788877766555554
No 176
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.98 E-value=1.4e-09 Score=116.17 Aligned_cols=99 Identities=26% Similarity=0.404 Sum_probs=71.9
Q ss_pred CCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHH
Q 014798 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 301 (418)
Q Consensus 225 ~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefv 301 (418)
....+|++++|.+...+++.+.+..+.... ..|||+|++||||+++|++|.... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~~~----------~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVARSN----------STVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhCcC----------CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 345789999999999999999888765443 379999999999999999998764 6799999998764
Q ss_pred HHh-----hhcch-------hHHHHHHHHHHhCCCeEEEEcCCcccc
Q 014798 302 EMF-----VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVG 336 (418)
Q Consensus 302 e~~-----vg~~~-------~~vr~lF~~A~~~aP~IIfIDEIDal~ 336 (418)
+.. .|... ......|+.+ ...+|||||||.+.
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~ 303 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEIS 303 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCC
Confidence 321 12110 0011123333 24599999999985
No 177
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.97 E-value=1.7e-09 Score=115.41 Aligned_cols=129 Identities=28% Similarity=0.426 Sum_probs=86.9
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHh---cCCCeeeeehhhHHHH
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM 303 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~vs~sefve~ 303 (418)
..+|++++|.+...+++.+.+..+.... .+|||+|++||||+++|++|... .+.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~~----------~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARSD----------ATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCCC----------CcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 4789999999999999999887755544 27999999999999999999764 4779999999876432
Q ss_pred -----hhhcc------h--hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhc--CCCC--
Q 014798 304 -----FVGVG------A--SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG-- 366 (418)
Q Consensus 304 -----~vg~~------~--~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emd--g~~~-- 366 (418)
+.|.. + ..-..+|+.|.. .+|||||||.+.. ..+..|..+|.+-. ....
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~Lp~-----------~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEMPL-----------PLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhCCH-----------HHHHHHHHHHhcCcEEecCCCc
Confidence 22211 1 012345665533 4999999999853 22334444443311 0111
Q ss_pred --CCCeEEEEEeCCC
Q 014798 367 --NTGIIVIAATNRA 379 (418)
Q Consensus 367 --~~~ViVIatTN~~ 379 (418)
..++.+|++||..
T Consensus 344 ~~~~dvRiIaat~~~ 358 (526)
T TIGR02329 344 PVPVDVRVVAATHCA 358 (526)
T ss_pred eeeecceEEeccCCC
Confidence 1246899999854
No 178
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.96 E-value=8.5e-10 Score=114.79 Aligned_cols=140 Identities=30% Similarity=0.469 Sum_probs=96.0
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHh---cCCCeeeeehhhHHHH
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM 303 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~vs~sefve~ 303 (418)
...+.+++|.+.+..++.+.++.....+. .|||.|.+||||.++||+|-.. .+.||+.+||..+.+.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd~----------tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSDS----------TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCCC----------eEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 67888999999999999999999877763 7999999999999999999654 4789999999987654
Q ss_pred h-----hhc------ch-hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHH--hcCCCCC--
Q 014798 304 F-----VGV------GA-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE--MDGFEGN-- 367 (418)
Q Consensus 304 ~-----vg~------~~-~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~e--mdg~~~~-- 367 (418)
. +|. |+ ..-+.-|+.|.. ..+|+|||..+... .+..+...|++ ++....+
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGelPL~-----------lQaKLLRvLQegEieRvG~~r~ 354 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGELPLA-----------LQAKLLRVLQEGEIERVGGDRT 354 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCC---CeEechhhccCCHH-----------HHHHHHHHHhhcceeecCCCce
Confidence 2 221 11 111233444433 49999999887432 23333333332 2222222
Q ss_pred --CCeEEEEEeCCCCCcchhhhCCCccc
Q 014798 368 --TGIIVIAATNRADILDSALLRPGRFD 393 (418)
Q Consensus 368 --~~ViVIatTN~~~~LD~ALlRpGRFd 393 (418)
-+|.||||||+ +|..++.. |+|-
T Consensus 355 ikVDVRiIAATNR--DL~~~V~~-G~FR 379 (550)
T COG3604 355 IKVDVRVIAATNR--DLEEMVRD-GEFR 379 (550)
T ss_pred eEEEEEEEeccch--hHHHHHHc-Ccch
Confidence 24999999996 45555543 6663
No 179
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.96 E-value=8.6e-09 Score=100.05 Aligned_cols=100 Identities=21% Similarity=0.300 Sum_probs=69.5
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHhhhc---chhHHHHHHHHHHhCCCeEEEEcCCcccccc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV---GASRVRDLFKKAKENAPCIVFVDEIDAVGRQ 338 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~vg~---~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~ 338 (418)
.+++|+|+||||||+|+.|+|.++ +..+++++.+++.+.+... ......++++... ..++|+|||++...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~-- 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT-- 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC--
Confidence 379999999999999999999987 7889999999988755432 1122334555443 45799999998753
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014798 339 RGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (418)
Q Consensus 339 r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~ 379 (418)
..+.....+.+++..-. ...-.+|.|||..
T Consensus 176 -------~s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~ 205 (244)
T PRK07952 176 -------ESRYEKVIINQIVDRRS----SSKRPTGMLTNSN 205 (244)
T ss_pred -------CCHHHHHHHHHHHHHHH----hCCCCEEEeCCCC
Confidence 12334456777776532 1234678888853
No 180
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=2.3e-09 Score=109.81 Aligned_cols=98 Identities=32% Similarity=0.503 Sum_probs=68.6
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH-Hhhhcch-hHHHHHHHHHHh----CCCeEEEEcCCccccccc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVGVGA-SRVRDLFKKAKE----NAPCIVFVDEIDAVGRQR 339 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve-~~vg~~~-~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r 339 (418)
+|||.||+|+|||+||+.+|+-+++||...+|..+.. -|+|+.. ..+.+++..|.. ....||||||+|.+..+.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 7999999999999999999999999999999999875 4888754 345566655422 234699999999998543
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcC
Q 014798 340 GTGIGGGNDEREQTLNQLLTEMDG 363 (418)
Q Consensus 340 ~~~~~~~~~e~~~~L~~LL~emdg 363 (418)
..-...-+-..+-+...||..++|
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred ccccccccccchhHHHHHHHHhcc
Confidence 221111122223345556666554
No 181
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.95 E-value=2.2e-09 Score=117.09 Aligned_cols=129 Identities=25% Similarity=0.351 Sum_probs=84.2
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHH-
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE- 302 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve- 302 (418)
..+|++++|.+...+++.+.+..+.... ..|||+|++||||+++|++|.... +.||+.++|..+.+
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~~----------~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKSS----------FPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCcC----------CCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 4579999999999998888777755433 269999999999999999997754 57999999986532
Q ss_pred ----Hhhhcc--hh--HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhc--CCCC----CC
Q 014798 303 ----MFVGVG--AS--RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----NT 368 (418)
Q Consensus 303 ----~~vg~~--~~--~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emd--g~~~----~~ 368 (418)
.+.|.. +. .....|+.| ...+|||||||.+.. ..+..|..+|++-. .... .-
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~-----------~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSP-----------ELQSALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCH-----------HHHHHHHHHHhcCcEEeCCCCceEEe
Confidence 233321 10 011124333 346999999999853 23334444443210 0011 11
Q ss_pred CeEEEEEeCCC
Q 014798 369 GIIVIAATNRA 379 (418)
Q Consensus 369 ~ViVIatTN~~ 379 (418)
++.+|+||+..
T Consensus 457 ~~riI~~t~~~ 467 (638)
T PRK11388 457 DVRVIATTTAD 467 (638)
T ss_pred eEEEEEeccCC
Confidence 57899999854
No 182
>PRK09087 hypothetical protein; Validated
Probab=98.94 E-value=2e-09 Score=103.15 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=88.3
Q ss_pred ccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 014798 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (418)
Q Consensus 222 ~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv 301 (418)
....+..+|++.+.-+.-.. ....++.+... ....++|+||+|+|||+|+++++...++. +++..++.
T Consensus 12 ~~~~~~~~~~~Fi~~~~N~~-a~~~l~~~~~~---------~~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~ 79 (226)
T PRK09087 12 FSHDPAYGRDDLLVTESNRA-AVSLVDHWPNW---------PSPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIG 79 (226)
T ss_pred CCCCCCCChhceeecCchHH-HHHHHHhcccC---------CCCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcc
Confidence 34456789999885332222 11222221111 12248999999999999999999886554 55555543
Q ss_pred HHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 302 e~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
..++ ..... .+|+|||+|.+.. + +..+.++++.+. .+...+||+++..|..
T Consensus 80 ~~~~-----------~~~~~---~~l~iDDi~~~~~---------~---~~~lf~l~n~~~---~~g~~ilits~~~p~~ 130 (226)
T PRK09087 80 SDAA-----------NAAAE---GPVLIEDIDAGGF---------D---ETGLFHLINSVR---QAGTSLLMTSRLWPSS 130 (226)
T ss_pred hHHH-----------Hhhhc---CeEEEECCCCCCC---------C---HHHHHHHHHHHH---hCCCeEEEECCCChHH
Confidence 3222 11111 3888999997621 1 223445554443 2233455555544442
Q ss_pred ---cchhhhCCCccc--eEEEecCch---HHHHHHHHhhccC
Q 014798 382 ---LDSALLRPGRFD--RQVKHVSLS---LMLWFLKTHSQYK 415 (418)
Q Consensus 382 ---LD~ALlRpGRFd--r~I~v~~lP---~R~~IL~~~l~~k 415 (418)
..+.|++ ||. ..+++ ..| +|.+|++.+++..
T Consensus 131 ~~~~~~dL~S--Rl~~gl~~~l-~~pd~e~~~~iL~~~~~~~ 169 (226)
T PRK09087 131 WNVKLPDLKS--RLKAATVVEI-GEPDDALLSQVIFKLFADR 169 (226)
T ss_pred hccccccHHH--HHhCCceeec-CCCCHHHHHHHHHHHHHHc
Confidence 3677888 875 56666 666 9999999888653
No 183
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=8.5e-09 Score=104.05 Aligned_cols=138 Identities=16% Similarity=0.196 Sum_probs=95.8
Q ss_pred ccccccC-chHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC----------------
Q 014798 229 TFDDVAG-VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------------- 291 (418)
Q Consensus 229 ~f~dV~G-~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p---------------- 291 (418)
.|++|.| ++.+++.+...+..- +.|..+||+||+|+||+++|+++|+.+-.+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~-----------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKN-----------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4788888 888888888776532 345578999999999999999999876321
Q ss_pred --------eeeeehhhHHHHhhhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHH
Q 014798 292 --------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (418)
Q Consensus 292 --------fi~vs~sefve~~vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~ 359 (418)
+.++... . ...+...+|++.+.+.. ....|++|||+|.+. ....|.||.
T Consensus 72 ~~~~~hpD~~~i~~~---~--~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------------~~a~NaLLK 132 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---G--QSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------------ASAANSLLK 132 (329)
T ss_pred HhcCCCCCEEEeccc---c--ccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------------HHHHHHHHH
Confidence 1111110 0 01123467777665542 234699999999984 346788999
Q ss_pred HhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 360 emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
.++. +.+++++|.+|+.++.|-+++++ |. ..+.+ ..|
T Consensus 133 ~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~-~~~ 169 (329)
T PRK08058 133 FLEE--PSGGTTAILLTENKHQILPTILS--RC-QVVEF-RPL 169 (329)
T ss_pred HhcC--CCCCceEEEEeCChHhCcHHHHh--hc-eeeeC-CCC
Confidence 8884 44567888888888999999998 66 34666 444
No 184
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.94 E-value=4.7e-10 Score=98.49 Aligned_cols=109 Identities=33% Similarity=0.418 Sum_probs=59.8
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehh-hHH-HHhhhcchhHHH-HHHHHHHhCC---CeEEEEcCCccccccc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS-EFV-EMFVGVGASRVR-DLFKKAKENA---PCIVFVDEIDAVGRQR 339 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~s-efv-e~~vg~~~~~vr-~lF~~A~~~a---P~IIfIDEIDal~~~r 339 (418)
+|||+|+||+|||++|+++|+..+..|..|.++ ++. ....|...-.-. ..|+- ... ..|+++|||....+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~--~~GPif~~ill~DEiNrapp-- 76 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEF--RPGPIFTNILLADEINRAPP-- 76 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEE--EE-TT-SSEEEEETGGGS-H--
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEe--ecChhhhceeeecccccCCH--
Confidence 489999999999999999999999999999875 332 333332110000 00000 001 14999999987643
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCC---------CCCCCeEEEEEeCCCC-----CcchhhhCCCcc
Q 014798 340 GTGIGGGNDEREQTLNQLLTEMDGF---------EGNTGIIVIAATNRAD-----ILDSALLRPGRF 392 (418)
Q Consensus 340 ~~~~~~~~~e~~~~L~~LL~emdg~---------~~~~~ViVIatTN~~~-----~LD~ALlRpGRF 392 (418)
++...||+.|.+. .-.+.+.||||-|+.+ .|+++++. ||
T Consensus 77 ------------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 77 ------------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp ------------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred ------------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 4566666666432 2235689999999877 68888888 87
No 185
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5.9e-09 Score=114.47 Aligned_cols=160 Identities=24% Similarity=0.371 Sum_probs=115.2
Q ss_pred CCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc----------CCCeee
Q 014798 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 294 (418)
Q Consensus 225 ~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~ 294 (418)
...-.+|-|+|.++..+.+.+++.. .. .++-+|+|+||+|||.++..+|.+. +..++.
T Consensus 164 Ar~gklDPvIGRd~EI~r~iqIL~R---R~---------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s 231 (786)
T COG0542 164 AREGKLDPVIGRDEEIRRTIQILSR---RT---------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS 231 (786)
T ss_pred HhcCCCCCCcChHHHHHHHHHHHhc---cC---------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE
Confidence 3456788999999887776665542 21 2367899999999999999999865 556888
Q ss_pred eehhhHH--HHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 014798 295 ISGSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (418)
Q Consensus 295 vs~sefv--e~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViV 372 (418)
++...++ .+|-|+-+.+++.+.+...+..+.|+|||||+.+...-+.. ++ .......|.-. +. +..+.+
T Consensus 232 LD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~-G~-a~DAaNiLKPa---LA----RGeL~~ 302 (786)
T COG0542 232 LDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATE-GG-AMDAANLLKPA---LA----RGELRC 302 (786)
T ss_pred ecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccc-cc-ccchhhhhHHH---Hh----cCCeEE
Confidence 8888877 46889999999999999998889999999999986432211 01 12222233222 22 345789
Q ss_pred EEEeCCCC-----CcchhhhCCCccceEEEecCch---HHHHHHH
Q 014798 373 IAATNRAD-----ILDSALLRPGRFDRQVKHVSLS---LMLWFLK 409 (418)
Q Consensus 373 IatTN~~~-----~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~ 409 (418)
|+||...+ .=|+||-| ||.. |.+ +-| +-..||+
T Consensus 303 IGATT~~EYRk~iEKD~AL~R--RFQ~-V~V-~EPs~e~ti~ILr 343 (786)
T COG0542 303 IGATTLDEYRKYIEKDAALER--RFQK-VLV-DEPSVEDTIAILR 343 (786)
T ss_pred EEeccHHHHHHHhhhchHHHh--cCce-eeC-CCCCHHHHHHHHH
Confidence 99887333 45899999 9975 667 777 6666665
No 186
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.93 E-value=5.8e-09 Score=109.64 Aligned_cols=129 Identities=23% Similarity=0.251 Sum_probs=74.3
Q ss_pred CceEECCCCChHHHHHHHHHHhcCC--Ceeeeehhh-HHHHhhhcc-hhHH--HHHHHHHHhC---CCeEEEEcCCcccc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSE-FVEMFVGVG-ASRV--RDLFKKAKEN---APCIVFVDEIDAVG 336 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~--pfi~vs~se-fve~~vg~~-~~~v--r~lF~~A~~~---aP~IIfIDEIDal~ 336 (418)
+|||+||||||||++|++++...+. +|..+.+.- ..+..+|.- .... ..-|.....+ ...++|+|||..+.
T Consensus 41 hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras 120 (498)
T PRK13531 41 SVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG 120 (498)
T ss_pred CEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccCC
Confidence 6999999999999999999987643 555544431 122333321 0000 1122222111 23499999997664
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHhcCCC--C------CCCeEEEEEeCCCC---CcchhhhCCCccceEEEecCch-H-
Q 014798 337 RQRGTGIGGGNDEREQTLNQLLTEMDGFE--G------NTGIIVIAATNRAD---ILDSALLRPGRFDRQVKHVSLS-L- 403 (418)
Q Consensus 337 ~~r~~~~~~~~~e~~~~L~~LL~emdg~~--~------~~~ViVIatTN~~~---~LD~ALlRpGRFdr~I~v~~lP-~- 403 (418)
..+.+.||..|+.-. . -+..++++|||... ...+++.. ||-..+.+ ++| .
T Consensus 121 --------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~v-p~l~~~ 183 (498)
T PRK13531 121 --------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWL-DKVQDK 183 (498)
T ss_pred --------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEEC-CCCCch
Confidence 346667777773221 1 11234455557322 24458988 99888888 666 2
Q ss_pred --HHHHHHHh
Q 014798 404 --MLWFLKTH 411 (418)
Q Consensus 404 --R~~IL~~~ 411 (418)
-.+|+...
T Consensus 184 ~~e~~lL~~~ 193 (498)
T PRK13531 184 ANFRSMLTSQ 193 (498)
T ss_pred HHHHHHHHcc
Confidence 35566553
No 187
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.93 E-value=2.4e-08 Score=95.97 Aligned_cols=160 Identities=21% Similarity=0.348 Sum_probs=110.3
Q ss_pred cCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhh
Q 014798 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (418)
Q Consensus 223 ~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~se 299 (418)
.....+.+++++|.|.+++.+.+..+.+.... +-++|||+|..|||||+|+||+-.+. +..++.|+-++
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~--------pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFAEGL--------PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHHcCC--------cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 34567999999999999999988777654433 34589999999999999999997766 66788888887
Q ss_pred HHHHhhhcchhHHHHHHHHHHhC-CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEEe
Q 014798 300 FVEMFVGVGASRVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--GNTGIIVIAAT 376 (418)
Q Consensus 300 fve~~vg~~~~~vr~lF~~A~~~-aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~--~~~~ViVIatT 376 (418)
+.. +-++++..+.. ..-|||+||+- -++.+.....|-..+||-- ...+|++-||+
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLS-------------Fe~gd~~yK~LKs~LeG~ve~rP~NVl~YATS 181 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLS-------------FEEGDDAYKALKSALEGGVEGRPANVLFYATS 181 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCC-------------CCCCchHHHHHHHHhcCCcccCCCeEEEEEec
Confidence 643 44566665543 34699999861 1222234445555566532 24579999999
Q ss_pred CCCCCcchhhh--------------------CCCccceEEEecCch---HHHHHHHHhhc
Q 014798 377 NRADILDSALL--------------------RPGRFDRQVKHVSLS---LMLWFLKTHSQ 413 (418)
Q Consensus 377 N~~~~LD~ALl--------------------RpGRFdr~I~v~~lP---~R~~IL~~~l~ 413 (418)
||...|.+... =..||...+.+ ..+ +-..|...+++
T Consensus 182 NRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F-~~~~Q~~YL~~V~~~a~ 240 (287)
T COG2607 182 NRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSF-YPCDQDEYLKIVDHYAK 240 (287)
T ss_pred CCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecc-cCCCHHHHHHHHHHHHH
Confidence 98765543221 12389888888 555 66666665553
No 188
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.93 E-value=2.7e-09 Score=109.84 Aligned_cols=151 Identities=26% Similarity=0.414 Sum_probs=99.6
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHH---h-cCCCeeeeehhhHH
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---E-AGVPFFSISGSEFV 301 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~---e-l~~pfi~vs~sefv 301 (418)
....+++++|.+...+++.+.+..+.... ..||+.|++||||+++|+++.. . .+.||+.+||..+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~ap~~----------~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYAPSG----------LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhCCCC----------CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 35678999999999998888777633222 4799999999999999999953 3 47899999999886
Q ss_pred HHh-----hh------cc-hhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHH-----hcCC
Q 014798 302 EMF-----VG------VG-ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE-----MDGF 364 (418)
Q Consensus 302 e~~-----vg------~~-~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~e-----mdg~ 364 (418)
+.. .| .| ...-..+|++|... ++|+|||..+.. +.+..+..+|++ +.+-
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~LP~-----------~~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRLPP-----------EGQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhCCH-----------hHHHHHHHHHHcCceEecCCC
Confidence 532 22 11 23344677777555 999999999853 334444455544 1111
Q ss_pred -CCCCCeEEEEEeCCCCCcchhhhC-CC----ccceEEEecCch
Q 014798 365 -EGNTGIIVIAATNRADILDSALLR-PG----RFDRQVKHVSLS 402 (418)
Q Consensus 365 -~~~~~ViVIatTN~~~~LD~ALlR-pG----RFdr~I~v~~lP 402 (418)
....+|.+|+||| +.++.+++. .. |+...|.+|++-
T Consensus 209 ~~~~~dVRli~AT~--~~l~~~~~~g~dl~~rl~~~~I~LPpLr 250 (403)
T COG1221 209 QPRPVDVRLICATT--EDLEEAVLAGADLTRRLNILTITLPPLR 250 (403)
T ss_pred CCcCCCceeeeccc--cCHHHHHHhhcchhhhhcCceecCCChh
Confidence 1234699999998 344444443 11 455566664444
No 189
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.92 E-value=6.8e-09 Score=114.21 Aligned_cols=129 Identities=26% Similarity=0.399 Sum_probs=86.1
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM 303 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~ 303 (418)
+..|++++|.+...+.+.+.++.+.... .+|||+|++|||||++|++|.... +.||+.++|..+.+.
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~~~----------~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQSD----------STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhCCC----------CCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 4678999999999999998888765443 379999999999999999997644 679999999865322
Q ss_pred -----hhhcc-------hhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhc--CCC----
Q 014798 304 -----FVGVG-------ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE---- 365 (418)
Q Consensus 304 -----~vg~~-------~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emd--g~~---- 365 (418)
+.|.. .......|+.|. ..++||||||.+.. +.+..+..++..-. ...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L~~-----------~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDMPL-----------ELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhCCH-----------HHHHHHHHHHHhCCEEeCCCCCc
Confidence 22210 011223454443 35999999999853 22333434443211 000
Q ss_pred CCCCeEEEEEeCCC
Q 014798 366 GNTGIIVIAATNRA 379 (418)
Q Consensus 366 ~~~~ViVIatTN~~ 379 (418)
...++.+|++|+..
T Consensus 508 ~~~~~RiI~~t~~~ 521 (686)
T PRK15429 508 IQTDVRLIAATNRD 521 (686)
T ss_pred ccceEEEEEeCCCC
Confidence 12358899999864
No 190
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.92 E-value=3.7e-09 Score=93.09 Aligned_cols=125 Identities=26% Similarity=0.453 Sum_probs=81.0
Q ss_pred cCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcC---CCeeeeehhhHHHHhhhcchh
Q 014798 234 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVEMFVGVGAS 310 (418)
Q Consensus 234 ~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~---~pfi~vs~sefve~~vg~~~~ 310 (418)
+|.....+++.+.++.+.... ..|+|+|++||||+++|+++....+ .+|+.++|.+..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~----------~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSS----------SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSS----------S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhCCC----------CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 467778888888888766554 2799999999999999999988664 478888887642
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC-C------Ccc
Q 014798 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA-D------ILD 383 (418)
Q Consensus 311 ~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~-~------~LD 383 (418)
.++++.+ ...++||+|+|.+. .+.+..+.+++...+ ..++.+|+++..+ + .++
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~-----------~~~Q~~L~~~l~~~~----~~~~RlI~ss~~~l~~l~~~~~~~ 121 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLS-----------PEAQRRLLDLLKRQE----RSNVRLIASSSQDLEELVEEGRFS 121 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT----TTTSEEEEEECC-CCCHHHHSTHH
T ss_pred --HHHHHHc---CCCEEEECChHHCC-----------HHHHHHHHHHHHhcC----CCCeEEEEEeCCCHHHHhhccchh
Confidence 3456555 44699999999994 333445555555432 4456788877643 2 244
Q ss_pred hhhhCCCccc-eEEEec
Q 014798 384 SALLRPGRFD-RQVKHV 399 (418)
Q Consensus 384 ~ALlRpGRFd-r~I~v~ 399 (418)
+.|.. ||. ..|.+|
T Consensus 122 ~~L~~--~l~~~~i~lP 136 (138)
T PF14532_consen 122 PDLYY--RLSQLEIHLP 136 (138)
T ss_dssp HHHHH--HCSTCEEEE-
T ss_pred HHHHH--HhCCCEEeCC
Confidence 55544 443 355553
No 191
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.91 E-value=2.7e-09 Score=113.53 Aligned_cols=127 Identities=28% Similarity=0.358 Sum_probs=85.3
Q ss_pred ccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHh---cCCCeeeeehhhHHHH--
Q 014798 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM-- 303 (418)
Q Consensus 229 ~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~vs~sefve~-- 303 (418)
++++++|.+...+++.+.+..+.... .+|||+|++||||+++|++|... .+.||+.++|..+.+.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~----------~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASD----------LNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCC----------CcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 67899999999999999888865544 37999999999999999999775 4679999999876432
Q ss_pred ---hhhcc------h-hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhc--CCC----CC
Q 014798 304 ---FVGVG------A-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE----GN 367 (418)
Q Consensus 304 ---~vg~~------~-~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emd--g~~----~~ 367 (418)
+.|.. + ......|+.|. ..+|||||||.+.. +.+..+..++..-. ... ..
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L~~-----------~~Q~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGELPL-----------ALQAKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhCCH-----------HHHHHHHHHHhcCCEeeCCCCccee
Confidence 22211 0 01112355443 35899999999953 22333333433211 000 12
Q ss_pred CCeEEEEEeCCC
Q 014798 368 TGIIVIAATNRA 379 (418)
Q Consensus 368 ~~ViVIatTN~~ 379 (418)
.++.+|++||+.
T Consensus 321 ~~~RiI~~t~~~ 332 (509)
T PRK05022 321 VDVRVIAATNRD 332 (509)
T ss_pred cceEEEEecCCC
Confidence 358899999864
No 192
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.89 E-value=5.3e-09 Score=111.42 Aligned_cols=160 Identities=19% Similarity=0.163 Sum_probs=89.4
Q ss_pred cccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC-eeee---ehhhHHHHhhh-
Q 014798 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-FFSI---SGSEFVEMFVG- 306 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-fi~v---s~sefve~~vg- 306 (418)
+|.|.+.+|..+.-.+-.-..+..-.....+...+|||+|+||||||++|+++++..... |... ++..+......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 477888887665433321111111011122223479999999999999999999876433 2221 22112110000
Q ss_pred --cchhHHH-HHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC-----------CCCCeEE
Q 014798 307 --VGASRVR-DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNTGIIV 372 (418)
Q Consensus 307 --~~~~~vr-~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~-----------~~~~ViV 372 (418)
.+...++ ..+..| ...+++|||+|.+.. . +...|++.|+.-. .+..+.|
T Consensus 284 ~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~~-----------~---~q~~L~e~me~~~i~i~k~G~~~~l~~~~~v 346 (509)
T smart00350 284 PETREFTLEGGALVLA---DNGVCCIDEFDKMDD-----------S---DRTAIHEAMEQQTISIAKAGITTTLNARCSV 346 (509)
T ss_pred cCcceEEecCccEEec---CCCEEEEechhhCCH-----------H---HHHHHHHHHhcCEEEEEeCCEEEEecCCcEE
Confidence 0000000 011122 235999999999842 2 3334444443211 1356899
Q ss_pred EEEeCCCC-------------CcchhhhCCCccceEEEecCch---HHHHHHHH
Q 014798 373 IAATNRAD-------------ILDSALLRPGRFDRQVKHVSLS---LMLWFLKT 410 (418)
Q Consensus 373 IatTN~~~-------------~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~ 410 (418)
|||+|..+ .|++++++ |||..+.+.+.| .+.+|.+.
T Consensus 347 iAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~ 398 (509)
T smart00350 347 LAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKH 398 (509)
T ss_pred EEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHH
Confidence 99999653 59999999 999977775777 44566554
No 193
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.89 E-value=4.2e-09 Score=111.79 Aligned_cols=145 Identities=26% Similarity=0.353 Sum_probs=89.2
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc------------------
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA------------------ 288 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el------------------ 288 (418)
...|+||.|++.+++.+.-.+ .. ..+++|+||||||||++|+++++.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa---~~-----------g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAA---AG-----------GHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhc---cC-----------CCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 458999999998876554332 11 1369999999999999999998632
Q ss_pred ----------CCCeeeeehhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHH
Q 014798 289 ----------GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (418)
Q Consensus 289 ----------~~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL 358 (418)
..||...+++......+|.+...-...+..|. ..++||||++.+.+ ..+..|.+.|
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~~~-----------~~~~~L~~~L 319 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEFKR-----------SVLDALREPI 319 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhCCH-----------HHHHHHHHHH
Confidence 23454444443333334433221222344442 35999999998742 2333444444
Q ss_pred HHhc----C----CCCCCCeEEEEEeCCC-----C------------------CcchhhhCCCccceEEEecCc
Q 014798 359 TEMD----G----FEGNTGIIVIAATNRA-----D------------------ILDSALLRPGRFDRQVKHVSL 401 (418)
Q Consensus 359 ~emd----g----~~~~~~ViVIatTN~~-----~------------------~LD~ALlRpGRFdr~I~v~~l 401 (418)
+.-. . .....++.+|+++|.- + .+...|++ |||..+.+++.
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~ 391 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLL 391 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCC
Confidence 3210 0 0112468999999952 1 47778888 99999999433
No 194
>PRK09183 transposase/IS protein; Provisional
Probab=98.89 E-value=1.2e-08 Score=99.64 Aligned_cols=99 Identities=23% Similarity=0.359 Sum_probs=66.0
Q ss_pred CceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHhhh-cchhHHHHHHHHHHhCCCeEEEEcCCcccccccCC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVG-VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGT 341 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~vg-~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~ 341 (418)
+++|+||||||||+||.+++.++ |..+.++++.++...+.. .....+...+... ...+++++|||++....
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~---- 178 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF---- 178 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC----
Confidence 79999999999999999997654 778888898888755432 1122344555543 24567999999977532
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014798 342 GIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (418)
Q Consensus 342 ~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~ 379 (418)
+.+....+.+++....+ +. .+|.|||.+
T Consensus 179 -----~~~~~~~lf~li~~r~~---~~--s~iiTsn~~ 206 (259)
T PRK09183 179 -----SQEEANLFFQVIAKRYE---KG--SMILTSNLP 206 (259)
T ss_pred -----ChHHHHHHHHHHHHHHh---cC--cEEEecCCC
Confidence 23334456666665432 12 367788853
No 195
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.89 E-value=9.2e-09 Score=109.88 Aligned_cols=130 Identities=24% Similarity=0.378 Sum_probs=86.0
Q ss_pred CCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHH
Q 014798 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 301 (418)
Q Consensus 225 ~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefv 301 (418)
....+|++++|.+...+++.+.+..+.... ..|||+|++||||+++|+++.... +.||+.++|+.+.
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A~~~----------~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKLAMLD----------APLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHHhCCC----------CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 356789999999998888888777654433 269999999999999999985543 5799999998764
Q ss_pred HH-----hhhcch-------hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC---
Q 014798 302 EM-----FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--- 366 (418)
Q Consensus 302 e~-----~vg~~~-------~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~--- 366 (418)
+. +.|... .....+|+.|. ..+|||||||.+.. ..+..+..++..- .+..
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~-----------~~Q~~Ll~~l~~~-~~~~~g~ 332 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSP-----------RMQAKLLRFLNDG-TFRRVGE 332 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCH-----------HHHHHHHHHHhcC-CcccCCC
Confidence 32 223211 11123455553 35899999999853 2333444444331 0111
Q ss_pred ----CCCeEEEEEeCCC
Q 014798 367 ----NTGIIVIAATNRA 379 (418)
Q Consensus 367 ----~~~ViVIatTN~~ 379 (418)
..++.+|+||+.+
T Consensus 333 ~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 333 DHEVHVDVRVICATQKN 349 (520)
T ss_pred CcceeeeeEEEEecCCC
Confidence 2357899988754
No 196
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.89 E-value=1.8e-08 Score=101.17 Aligned_cols=142 Identities=15% Similarity=0.226 Sum_probs=96.9
Q ss_pred ccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC-----------------
Q 014798 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------------- 291 (418)
Q Consensus 229 ~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p----------------- 291 (418)
.|++|+|++++++.+.+.+..-+ .|..+||+||+|+||+++|+++|..+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~r-----------l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNR-----------IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCC-----------CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 58999999999999998887433 34479999999999999999999876221
Q ss_pred -eeeeehhh------HHHHh---hh--------cchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChH
Q 014798 292 -FFSISGSE------FVEMF---VG--------VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDE 349 (418)
Q Consensus 292 -fi~vs~se------fve~~---vg--------~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e 349 (418)
++.+.... ....+ .| .....+|++.+.+.. ....|++||++|.+.
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------- 137 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------- 137 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC-------------
Confidence 12222110 00000 00 112356777655542 345799999999984
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 350 REQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 350 ~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
....|.||..++... +.++|..|+.++.|-|.+++ |. ..+.+ +.+
T Consensus 138 -~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f-~~l 182 (314)
T PRK07399 138 -EAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RC-QIIPF-YRL 182 (314)
T ss_pred -HHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hc-eEEec-CCC
Confidence 346778888887644 34677788889999999998 76 45667 444
No 197
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.88 E-value=1.4e-09 Score=113.71 Aligned_cols=125 Identities=30% Similarity=0.449 Sum_probs=89.6
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHh---cCCCeeeeehhhHHHH
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM 303 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~vs~sefve~ 303 (418)
...+.+++|.+.+.+++.+.+..+...+. .|||+|++||||.++||+|-.. .+.||+.+||..+-+.
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA~s~a----------~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVAPSDA----------SVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHhCCCC----------CEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 34677899999999999999999877763 7999999999999999999654 4779999999976543
Q ss_pred -----hhhc------ch-hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcC-----CCC
Q 014798 304 -----FVGV------GA-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FEG 366 (418)
Q Consensus 304 -----~vg~------~~-~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg-----~~~ 366 (418)
++|. |+ .+-...|+.|... ++|||||..+.. + ....||.-++. ..+
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~mpl-----------~---~Q~kLLRvLqe~~~~rvG~ 269 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEMPL-----------E---LQVKLLRVLQEREFERVGG 269 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccCCH-----------H---HHHHHHHHHHcCeeEecCC
Confidence 3331 11 1223456666444 999999988742 2 33344444332 111
Q ss_pred ----CCCeEEEEEeCC
Q 014798 367 ----NTGIIVIAATNR 378 (418)
Q Consensus 367 ----~~~ViVIatTN~ 378 (418)
+-+|.||+|||+
T Consensus 270 ~~~i~vdvRiIaaT~~ 285 (464)
T COG2204 270 NKPIKVDVRIIAATNR 285 (464)
T ss_pred CcccceeeEEEeecCc
Confidence 235999999996
No 198
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=1e-08 Score=103.61 Aligned_cols=127 Identities=19% Similarity=0.231 Sum_probs=86.8
Q ss_pred CccCCCceEECCCCChHHHHHHHHHHhcCCC-------eee-eehhhHHHH------h-------hhcchhHHHHHHHHH
Q 014798 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFS-ISGSEFVEM------F-------VGVGASRVRDLFKKA 319 (418)
Q Consensus 261 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi~-vs~sefve~------~-------vg~~~~~vr~lF~~A 319 (418)
.+.|..+||+||+|+|||++|+++|..+... .=. -+|..+... + ...+...+|++.+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 3456789999999999999999999877431 000 011111100 0 012345778877666
Q ss_pred Hh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceE
Q 014798 320 KE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQ 395 (418)
Q Consensus 320 ~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~ 395 (418)
.. ....|++|||+|.+. ....|.||+.++. +.+++++|.+|+.++.|.|.+++ |+..
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~--------------~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc~~- 159 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMN--------------RNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RCQQ- 159 (328)
T ss_pred hhccccCCCeEEEECChhhCC--------------HHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hcee-
Confidence 43 345699999999994 4577889998885 34678999999999999999998 8754
Q ss_pred EEecCchHHHHH
Q 014798 396 VKHVSLSLMLWF 407 (418)
Q Consensus 396 I~v~~lP~R~~I 407 (418)
+.+ ..|...++
T Consensus 160 ~~~-~~~~~~~~ 170 (328)
T PRK05707 160 QAC-PLPSNEES 170 (328)
T ss_pred eeC-CCcCHHHH
Confidence 777 55533333
No 199
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.86 E-value=2.1e-08 Score=109.02 Aligned_cols=113 Identities=14% Similarity=0.144 Sum_probs=76.3
Q ss_pred cccccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeee-e
Q 014798 217 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS-I 295 (418)
Q Consensus 217 ~~~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~-v 295 (418)
....|.++..+.+++|++|.++..+++..++.....+. ...+.++|+||||||||++++++|++++..+.. .
T Consensus 70 ~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~-------~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~ 142 (637)
T TIGR00602 70 GNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLEN-------APKRILLITGPSGCGKSTTIKILSKELGIQVQEWS 142 (637)
T ss_pred ccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhccccc-------CCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHh
Confidence 34578899999999999999999998888877543221 122348999999999999999999998765543 1
Q ss_pred ehh---hHH----------HHh--hhcchhHHHHHHHHHHh----------CCCeEEEEcCCcccc
Q 014798 296 SGS---EFV----------EMF--VGVGASRVRDLFKKAKE----------NAPCIVFVDEIDAVG 336 (418)
Q Consensus 296 s~s---efv----------e~~--vg~~~~~vr~lF~~A~~----------~aP~IIfIDEIDal~ 336 (418)
+.. ... +.+ .......+++++..+.. ....||+|||++.+.
T Consensus 143 npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~ 208 (637)
T TIGR00602 143 NPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQF 208 (637)
T ss_pred hhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhc
Confidence 111 000 000 01123344555555541 345799999999875
No 200
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.85 E-value=1.6e-08 Score=101.33 Aligned_cols=101 Identities=26% Similarity=0.337 Sum_probs=67.4
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHhhhc-chhHHHHHHHHHHhCCCeEEEEcCCccccccc
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~vg~-~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r 339 (418)
.+|++|+||+|||||+||.|+|+++ |.++.+++.++|+..+... ......+.++... ...+++|||+.+-..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~~-- 231 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQM-- 231 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCccc--
Confidence 4699999999999999999999987 7888999999887665322 1223445555443 346999999966421
Q ss_pred CCCCCCCChHHHHHHHHHHHH-hcCCCCCCCeEEEEEeCCC
Q 014798 340 GTGIGGGNDEREQTLNQLLTE-MDGFEGNTGIIVIAATNRA 379 (418)
Q Consensus 340 ~~~~~~~~~e~~~~L~~LL~e-mdg~~~~~~ViVIatTN~~ 379 (418)
..-.+...+..++.. +. .+...|.|||.+
T Consensus 232 ------s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 232 ------SSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred ------cHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 111222345555543 22 235689999953
No 201
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.82 E-value=1.7e-08 Score=109.28 Aligned_cols=127 Identities=25% Similarity=0.328 Sum_probs=87.4
Q ss_pred CCceEECCCCChHHHHHHHHHHhcC--CCeeeeehhhHHHHhhhcchhHHHH------------HHHHHHhCCCeEEEEc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEMFVGVGASRVRD------------LFKKAKENAPCIVFVD 330 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~--~pfi~vs~sefve~~vg~~~~~vr~------------lF~~A~~~aP~IIfID 330 (418)
.+|||.|+||||||++|++++..+. .||+.+......+..+|.- .+.. ++.+| ...++|||
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A---~~GvL~lD 91 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEA---PRGVLYVD 91 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeC---CCCcEecc
Confidence 3799999999999999999999774 4788887643334333321 1111 11111 12499999
Q ss_pred CCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC-----------CCCCeEEEEEeCCCC---CcchhhhCCCccceEE
Q 014798 331 EIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNTGIIVIAATNRAD---ILDSALLRPGRFDRQV 396 (418)
Q Consensus 331 EIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~-----------~~~~ViVIatTN~~~---~LD~ALlRpGRFdr~I 396 (418)
||+.+.+ .+.+.|+..|+.-. ....+.||+|+|..+ .|.++|+. ||+.++
T Consensus 92 Ei~rl~~--------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v 155 (589)
T TIGR02031 92 MANLLDD--------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHV 155 (589)
T ss_pred chhhCCH--------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCee
Confidence 9999853 35556666664321 123588999999765 79999999 999988
Q ss_pred EecCch---HHHHHHHHhh
Q 014798 397 KHVSLS---LMLWFLKTHS 412 (418)
Q Consensus 397 ~v~~lP---~R~~IL~~~l 412 (418)
.+...| +|.+|++.+.
T Consensus 156 ~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 156 SLEDVASQDLRVEIVRRER 174 (589)
T ss_pred ecCCCCCHHHHHHHHHHHH
Confidence 884444 7889988765
No 202
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.81 E-value=4.6e-08 Score=98.89 Aligned_cols=111 Identities=19% Similarity=0.294 Sum_probs=71.8
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHhhhc---chhHHHHHHHHHHhCCCeEEEEcCCcccccc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV---GASRVRDLFKKAKENAPCIVFVDEIDAVGRQ 338 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~vg~---~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~ 338 (418)
.+++|+||+|||||+||.|+|.++ +..+++++..++.+.+... ........++... ...+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC--
Confidence 489999999999999999999987 7889999999988765331 1111122233332 34699999997652
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-CCC----cchhhhCCCcc
Q 014798 339 RGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADI----LDSALLRPGRF 392 (418)
Q Consensus 339 r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~-~~~----LD~ALlRpGRF 392 (418)
.++.....+.+++...-. .+-.+|.|||. ++. +++.+.+ |+
T Consensus 260 -------~t~~~~~~Lf~iin~R~~----~~k~tIiTSNl~~~el~~~~~eri~S--RL 305 (329)
T PRK06835 260 -------ITEFSKSELFNLINKRLL----RQKKMIISTNLSLEELLKTYSERISS--RL 305 (329)
T ss_pred -------CCHHHHHHHHHHHHHHHH----CCCCEEEECCCCHHHHHHHHhHHHHH--HH
Confidence 233444556666655321 12347888884 333 4556665 54
No 203
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.79 E-value=1.5e-08 Score=92.12 Aligned_cols=131 Identities=21% Similarity=0.327 Sum_probs=86.0
Q ss_pred CchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC-----------------------
Q 014798 235 GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------------------- 291 (418)
Q Consensus 235 G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p----------------------- 291 (418)
|++++.+.+.+.+..-+ .|..+||+||+|+||+++|+++|..+-..
T Consensus 1 gq~~~~~~L~~~~~~~~-----------l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----------LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcCC-----------cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 56777777766665333 34479999999999999999999876221
Q ss_pred eeeeehhhHHHHhhhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 014798 292 FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (418)
Q Consensus 292 fi~vs~sefve~~vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~ 367 (418)
++.++..+.. -..+...+|++.+.+.. ....|++|||+|.+. ....|.||.-|+. +.
T Consensus 70 ~~~~~~~~~~---~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~--------------~~a~NaLLK~LEe--pp 130 (162)
T PF13177_consen 70 FIIIKPDKKK---KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT--------------EEAQNALLKTLEE--PP 130 (162)
T ss_dssp EEEEETTTSS---SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHS--TT
T ss_pred eEEEeccccc---chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh--------------HHHHHHHHHHhcC--CC
Confidence 1111111100 01234567776666533 345699999999984 4578889999984 44
Q ss_pred CCeEEEEEeCCCCCcchhhhCCCccceEEEe
Q 014798 368 TGIIVIAATNRADILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 368 ~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v 398 (418)
.++++|.+|+.++.|-+.+++ |.- .+.+
T Consensus 131 ~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~ 158 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRS--RCQ-VIRF 158 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHT--TSE-EEEE
T ss_pred CCEEEEEEECChHHChHHHHh--hce-EEec
Confidence 678999999999999999998 653 3444
No 204
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.77 E-value=7.1e-08 Score=94.16 Aligned_cols=100 Identities=24% Similarity=0.386 Sum_probs=64.1
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHhhhcch-hHHHHHHHHHHhCCCeEEEEcCCcccccccC
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGA-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRG 340 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~vg~~~-~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~ 340 (418)
.+++|+||||||||+||-|+|.++ |..+++++..+++......-. .....-+.... ....+++|||+....
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l-~~~dlLIiDDlG~~~---- 180 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL-KKVDLLIIDDIGYEP---- 180 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh-hcCCEEEEecccCcc----
Confidence 489999999999999999998877 889999999999876543222 12222222211 233699999996653
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014798 341 TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (418)
Q Consensus 341 ~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~ 379 (418)
.+......+.+++...- ... -. |.|+|.+
T Consensus 181 -----~~~~~~~~~~q~I~~r~---~~~-~~-~~tsN~~ 209 (254)
T COG1484 181 -----FSQEEADLLFQLISRRY---ESR-SL-IITSNLS 209 (254)
T ss_pred -----CCHHHHHHHHHHHHHHH---hhc-cc-eeecCCC
Confidence 12233344445444322 111 23 8999955
No 205
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=6e-08 Score=107.97 Aligned_cols=128 Identities=30% Similarity=0.351 Sum_probs=90.1
Q ss_pred cccCchHHHHHHHHHHHHhcCchhhhhcCC-ccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH--hh
Q 014798 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGA-RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM--FV 305 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~l~~p~~~~~lG~-~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~--~v 305 (418)
.|+|++++...+-+.+..-+..- +- +++-.++|.||.|+|||-||+|+|..+ .-.|+.+++++|.+. ..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl-----~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGL-----KDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hccchHHHHHHHHHHHHhhhccc-----CCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 57888888888887776522211 01 234468999999999999999999987 567999999998763 11
Q ss_pred h-----cchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC---------CCCeE
Q 014798 306 G-----VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG---------NTGII 371 (418)
Q Consensus 306 g-----~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~---------~~~Vi 371 (418)
| +|......+.+..+....+||+|||||..- ...++.|+..+|...- -.+++
T Consensus 638 gsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh--------------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I 703 (898)
T KOG1051|consen 638 GSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH--------------PDVLNILLQLLDRGRLTDSHGREVDFKNAI 703 (898)
T ss_pred CCCcccccchhHHHHHHHHhcCCceEEEEechhhcC--------------HHHHHHHHHHHhcCccccCCCcEeeccceE
Confidence 1 122344567777778888999999999863 3355656665554332 23599
Q ss_pred EEEEeCC
Q 014798 372 VIAATNR 378 (418)
Q Consensus 372 VIatTN~ 378 (418)
||+|+|.
T Consensus 704 ~IMTsn~ 710 (898)
T KOG1051|consen 704 FIMTSNV 710 (898)
T ss_pred EEEeccc
Confidence 9999884
No 206
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.75 E-value=1.7e-08 Score=93.42 Aligned_cols=99 Identities=27% Similarity=0.404 Sum_probs=63.5
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHhhhc-chhHHHHHHHHHHhCCCeEEEEcCCcccccccC
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRG 340 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~vg~-~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~ 340 (418)
.|++|+||||||||+||.|++.++ +.++.+++.+++++.+... ......+.++.... ..+++|||+....
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~~---- 121 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYEP---- 121 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS-----
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccceee----
Confidence 489999999999999999998866 8899999999998875432 12233445555433 3699999985432
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014798 341 TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (418)
Q Consensus 341 ~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~ 379 (418)
.++.....+.+++..-. .+ + ..|.|||..
T Consensus 122 -----~~~~~~~~l~~ii~~R~---~~-~-~tIiTSN~~ 150 (178)
T PF01695_consen 122 -----LSEWEAELLFEIIDERY---ER-K-PTIITSNLS 150 (178)
T ss_dssp -------HHHHHCTHHHHHHHH---HT---EEEEEESS-
T ss_pred -----ecccccccchhhhhHhh---cc-c-CeEeeCCCc
Confidence 22333445555655543 12 2 467799953
No 207
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=4.5e-08 Score=99.44 Aligned_cols=121 Identities=23% Similarity=0.306 Sum_probs=85.7
Q ss_pred ccCCCceEECCCCChHHHHHHHHHHhcCCCe-------------------------eeeehhhHH---------------
Q 014798 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------------------------FSISGSEFV--------------- 301 (418)
Q Consensus 262 ~~p~gVLL~GPPGTGKT~LArAIA~el~~pf-------------------------i~vs~sefv--------------- 301 (418)
+.|.++||+||+|+||+++|+++|+.+.+.- +.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 6678999999999999999999998763311 111110000
Q ss_pred -HH------h-hhcchhHHHHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 014798 302 -EM------F-VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG 369 (418)
Q Consensus 302 -e~------~-vg~~~~~vr~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ 369 (418)
+. . ...+...+|++.+.+.. ....|++||++|.+. ....|.||+.++ ++.++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLE--EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------------VAAANALLKTLE--EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------------HHHHHHHHHHhc--CCCcC
Confidence 00 0 01233567777766532 234599999999994 457889999998 56677
Q ss_pred eEEEEEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 370 IIVIAATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 370 ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
+++|.+|++++.|.|.+++ |+ ..+.+ +.|
T Consensus 163 t~fiL~t~~~~~LLpTI~S--Rc-q~i~~-~~~ 191 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILS--RC-RQFPM-TVP 191 (342)
T ss_pred cEEEEEECChhhCcHHHHh--cC-EEEEe-cCC
Confidence 9999999999999999999 87 56778 555
No 208
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.70 E-value=6.4e-08 Score=107.89 Aligned_cols=121 Identities=21% Similarity=0.192 Sum_probs=74.7
Q ss_pred cCCCceEECCCCChHHHHHHHHHHhc-------CCCeeeeehhhHHHHhh-hcchhHH-HHHHHHHHhCCCeEEEEcCCc
Q 014798 263 IPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSEFVEMFV-GVGASRV-RDLFKKAKENAPCIVFVDEID 333 (418)
Q Consensus 263 ~p~gVLL~GPPGTGKT~LArAIA~el-------~~pfi~vs~sefve~~v-g~~~~~v-r~lF~~A~~~aP~IIfIDEID 333 (418)
..-+|||+|+||||||.+|++++... |.++..+.+..+....- ..++-.+ ...+..| ...++||||+|
T Consensus 491 gdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlA---dgGtL~IDEid 567 (915)
T PTZ00111 491 GIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLA---NGGVCCIDELD 567 (915)
T ss_pred CCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEc---CCCeEEecchh
Confidence 34479999999999999999998754 24555555554432100 0011000 0011122 23599999999
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHhcCC-----------CCCCCeEEEEEeCCCC-------------CcchhhhCC
Q 014798 334 AVGRQRGTGIGGGNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRAD-------------ILDSALLRP 389 (418)
Q Consensus 334 al~~~r~~~~~~~~~e~~~~L~~LL~emdg~-----------~~~~~ViVIatTN~~~-------------~LD~ALlRp 389 (418)
.+.. . ....|++.|+.- ..+.++.||||+|..+ .|+++|++
T Consensus 568 kms~-----------~---~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS- 632 (915)
T PTZ00111 568 KCHN-----------E---SRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT- 632 (915)
T ss_pred hCCH-----------H---HHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh-
Confidence 9842 2 233344444322 1235689999999642 47899999
Q ss_pred CccceEEEecCch
Q 014798 390 GRFDRQVKHVSLS 402 (418)
Q Consensus 390 GRFdr~I~v~~lP 402 (418)
|||....+.+.|
T Consensus 633 -RFDLIf~l~D~~ 644 (915)
T PTZ00111 633 -RFDLIYLVLDHI 644 (915)
T ss_pred -hhcEEEEecCCC
Confidence 999987776777
No 209
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.69 E-value=6.9e-08 Score=102.54 Aligned_cols=141 Identities=30% Similarity=0.421 Sum_probs=86.8
Q ss_pred cccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcC------------------
Q 014798 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG------------------ 289 (418)
Q Consensus 228 ~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~------------------ 289 (418)
..|.++.|...+++.+.-. .. ....++|+||||||||++++.+++.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~la---a~-----------~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT---AA-----------GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhhee---cc-----------CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 4788899988766643211 11 123699999999999999999987431
Q ss_pred ----------CCeeeeehhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHH
Q 014798 290 ----------VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (418)
Q Consensus 290 ----------~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~ 359 (418)
.||....-+--..-.+|.+...-...+..|... ++|+||++.+.+ .++..|++
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gG---vLfLDEi~e~~~--------------~~~~~L~~ 316 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNG---VLFLDELPEFER--------------RTLDALRE 316 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCC---EEecCCchhCCH--------------HHHHHHHH
Confidence 112111111111123443332223455565444 999999988732 34455555
Q ss_pred HhcCCC-----------CCCCeEEEEEeCCCC---------------------CcchhhhCCCccceEEEecCch
Q 014798 360 EMDGFE-----------GNTGIIVIAATNRAD---------------------ILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 360 emdg~~-----------~~~~ViVIatTN~~~---------------------~LD~ALlRpGRFdr~I~v~~lP 402 (418)
.|+.-. ...++.+|+|+|... .|..+++. |||.++.+ +.|
T Consensus 317 ~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v-~~~ 388 (506)
T PRK09862 317 PIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEI-PLP 388 (506)
T ss_pred HHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEe-CCC
Confidence 443211 134689999999643 36778888 99999999 655
No 210
>PRK06921 hypothetical protein; Provisional
Probab=98.66 E-value=2.7e-07 Score=90.63 Aligned_cols=112 Identities=22% Similarity=0.262 Sum_probs=65.9
Q ss_pred CCceEECCCCChHHHHHHHHHHhc----CCCeeeeehhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcc-ccccc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA-VGRQR 339 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el----~~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDa-l~~~r 339 (418)
.+++|+||||||||+|+.|+|+++ +..+++++..++.+.+... .....+.++.. ...++|+|||++. +....
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~~~~g~e 194 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFKPVNGKP 194 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEeccccccCCCc
Confidence 479999999999999999999876 6778888888776554221 11122223332 3457999999944 21110
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-CCCc---chhhhC
Q 014798 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADIL---DSALLR 388 (418)
Q Consensus 340 ~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~-~~~L---D~ALlR 388 (418)
..++.....+..++...-. + +-.+|.|||. ++.| ++.+.+
T Consensus 195 -----~~t~~~~~~lf~iin~R~~---~-~k~tIitsn~~~~el~~~~~~l~s 238 (266)
T PRK06921 195 -----RATEWQIEQMYSVLNYRYL---N-HKPILISSELTIDELLDIDEALGS 238 (266)
T ss_pred -----cCCHHHHHHHHHHHHHHHH---C-CCCEEEECCCCHHHHhhhhhHHHH
Confidence 0122233455566655321 1 1235778874 3333 455554
No 211
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=3.6e-07 Score=92.09 Aligned_cols=126 Identities=21% Similarity=0.304 Sum_probs=84.0
Q ss_pred ccCCCceEECCCCChHHHHHHHHHHhcCCCe----eeeehhhHHHH-------hh-------------hcchhHHHHHHH
Q 014798 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF----FSISGSEFVEM-------FV-------------GVGASRVRDLFK 317 (418)
Q Consensus 262 ~~p~gVLL~GPPGTGKT~LArAIA~el~~pf----i~vs~sefve~-------~v-------------g~~~~~vr~lF~ 317 (418)
+.|..+||+||+|+||+++|.++|..+-+.- -...+-..+.. ++ ..+...||++.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 4456899999999999999999998662210 00111111100 00 123456777776
Q ss_pred HHHhC----CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccc
Q 014798 318 KAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 393 (418)
Q Consensus 318 ~A~~~----aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFd 393 (418)
.+... ...|++||++|.+. ....|.||+-++. +..++++|.+|+.++.|-|.+++ |+.
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RCq 165 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAIN--------------RAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RCQ 165 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhC--------------HHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hhe
Confidence 65433 23699999999994 4577889998884 44568889999999999999998 774
Q ss_pred eEEEecCchHHHHH
Q 014798 394 RQVKHVSLSLMLWF 407 (418)
Q Consensus 394 r~I~v~~lP~R~~I 407 (418)
.+.+ ..|...++
T Consensus 166 -~i~~-~~~~~~~~ 177 (319)
T PRK08769 166 -RLEF-KLPPAHEA 177 (319)
T ss_pred -EeeC-CCcCHHHH
Confidence 5667 55533333
No 212
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.62 E-value=1.5e-07 Score=96.28 Aligned_cols=108 Identities=20% Similarity=0.303 Sum_probs=68.5
Q ss_pred CccCCCceEECCCCChHHHHHHHHHHhcCC-CeeeeehhhHHHHhhhc------chhHHHHHHHHHHhCCCeEEEEcCCc
Q 014798 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-PFFSISGSEFVEMFVGV------GASRVRDLFKKAKENAPCIVFVDEID 333 (418)
Q Consensus 261 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~-pfi~vs~sefve~~vg~------~~~~vr~lF~~A~~~aP~IIfIDEID 333 (418)
...|+|++||||+|+|||+|.-+....+.. .-..+...+|+...... ...-+..+.+... ..-.+|++||+.
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~-~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA-KESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH-hcCCEEEEeeee
Confidence 457899999999999999999999887754 23333434444321110 1122333333332 233599999986
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-CCCcch
Q 014798 334 AVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADILDS 384 (418)
Q Consensus 334 al~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~-~~~LD~ 384 (418)
.- +-.....+..|+..+- ..++++|+|+|+ |+.|-+
T Consensus 138 V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~ 174 (362)
T PF03969_consen 138 VT-----------DIADAMILKRLFEALF----KRGVVLVATSNRPPEDLYK 174 (362)
T ss_pred cc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCChHHHcC
Confidence 53 2233567777888764 467999999995 555543
No 213
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.61 E-value=3.1e-07 Score=94.48 Aligned_cols=156 Identities=24% Similarity=0.385 Sum_probs=99.3
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-------CCCeeee----
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSI---- 295 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-------~~pfi~v---- 295 (418)
.+.|.-+.|++..|..|.-. .-+|+ -.|+||-|+.|||||+++||+|.-+ |+||-.=
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---av~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---AVDPQ---------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhh---hcccc---------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 57888999999999876432 22333 1489999999999999999999866 3322210
Q ss_pred --ehhhHHHH---------------h----hhcchhH------HHHHHHH----------HHhCCCeEEEEcCCcccccc
Q 014798 296 --SGSEFVEM---------------F----VGVGASR------VRDLFKK----------AKENAPCIVFVDEIDAVGRQ 338 (418)
Q Consensus 296 --s~sefve~---------------~----vg~~~~~------vr~lF~~----------A~~~aP~IIfIDEIDal~~~ 338 (418)
.|.+...+ + .+.++.+ +....+. |+.| ..|+|+||+..|.
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~An-RGIlYvDEvnlL~-- 157 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARAN-RGILYVDEVNLLD-- 157 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhcc-CCEEEEecccccc--
Confidence 11111111 1 1112221 1111110 1112 3599999998773
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcC---------C--CCCCCeEEEEEeCCC-CCcchhhhCCCccceEEEecCch----
Q 014798 339 RGTGIGGGNDEREQTLNQLLTEMDG---------F--EGNTGIIVIAATNRA-DILDSALLRPGRFDRQVKHVSLS---- 402 (418)
Q Consensus 339 r~~~~~~~~~e~~~~L~~LL~emdg---------~--~~~~~ViVIatTN~~-~~LD~ALlRpGRFdr~I~v~~lP---- 402 (418)
.+..+.||+.+.. + ....++++|+|.|.- ..|-|.|+. ||...+.+ ..|
T Consensus 158 ------------d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~-~~~~~~~ 222 (423)
T COG1239 158 ------------DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDT-HYPLDLE 222 (423)
T ss_pred ------------HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeec-cCCCCHH
Confidence 3456666665533 2 223469999999964 479999999 99999999 888
Q ss_pred HHHHHHHHhh
Q 014798 403 LMLWFLKTHS 412 (418)
Q Consensus 403 ~R~~IL~~~l 412 (418)
+|.+|.+.-+
T Consensus 223 ~rv~Ii~r~~ 232 (423)
T COG1239 223 ERVEIIRRRL 232 (423)
T ss_pred HHHHHHHHHH
Confidence 8888877544
No 214
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.61 E-value=3.1e-07 Score=92.78 Aligned_cols=121 Identities=17% Similarity=0.190 Sum_probs=82.8
Q ss_pred ccCCCceEECCCCChHHHHHHHHHHhcCCC-------eee-eehhhHH----------HHhh--hcchhHHHHHHHHHHh
Q 014798 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFS-ISGSEFV----------EMFV--GVGASRVRDLFKKAKE 321 (418)
Q Consensus 262 ~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi~-vs~sefv----------e~~v--g~~~~~vr~lF~~A~~ 321 (418)
+.|.++||+||+|+||+++|+++|..+-.. .=. -+|..+. +... ..+...+|++.+.+..
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 345589999999999999999999876321 000 0111110 0000 1245677777666543
Q ss_pred ----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEE
Q 014798 322 ----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVK 397 (418)
Q Consensus 322 ----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~ 397 (418)
....|++||++|.+. ....|.||+-++. +.+++++|.+|+.++.|-|.+++ |.. .+.
T Consensus 102 ~~~~g~~KV~iI~~a~~m~--------------~~AaNaLLKtLEE--Pp~~~~fiL~t~~~~~llpTI~S--RC~-~~~ 162 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLT--------------EAAANALLKTLEE--PRPNTYFLLQADLSAALLPTIYS--RCQ-TWL 162 (325)
T ss_pred ccccCCceEEEEechhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChHhCchHHHh--hce-EEe
Confidence 334699999999994 4578889999984 56678999999999999999998 763 456
Q ss_pred ecCch
Q 014798 398 HVSLS 402 (418)
Q Consensus 398 v~~lP 402 (418)
+ ..|
T Consensus 163 ~-~~~ 166 (325)
T PRK06871 163 I-HPP 166 (325)
T ss_pred C-CCC
Confidence 6 444
No 215
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=98.57 E-value=5.5e-08 Score=80.91 Aligned_cols=97 Identities=16% Similarity=0.202 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhhcC-CCCCCCCCCCcccccHHHHHHHHhcCCccEEEEeeCCeE--------EEEEecCcccCcc
Q 014798 64 FLKKLVGNVGVGTALLGSG-KAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTI--------AIVEAISPELGNR 134 (418)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~v~~~~~~~~--------~~~~~~~~~~~~~ 134 (418)
+++|++++++++++++.+. .. ...+..+++||+|+++|++|+|++|.+.++... .............
T Consensus 1 ~~~~ili~~vi~~l~~~~~~~~----~~~~~~~i~YS~F~~~l~~g~V~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (110)
T PF06480_consen 1 IILYILIILVILLLFNFFFFNS----NNSQTKEISYSEFLQMLEKGNVKKVVIQNDKITEPKKDNPTGDIEGKTKDGSKY 76 (110)
T ss_dssp ------------------S----------SSEE--HHHHHHTGGGT-EEEEEEETTTEE---------EEEE-TTTS-ST
T ss_pred CcceehhHHHHHHHHHHHHhhc----ccCCCcEECHHHHHHHHHcCCEEEEEEECCEEEEeeeccccccccccccCCCcc
Confidence 3578888877777666553 21 234677899999999999999999999866544 1111111111122
Q ss_pred eeEEEEEcCC---CcHHHHHHHHhcCcceeecc
Q 014798 135 VQRVRVQLPG---LSQELLQKFREKNIDFAAHN 164 (418)
Q Consensus 135 ~~~~~~~~~~---~~~~~~~~l~~~~v~~~~~~ 164 (418)
........+. ..+.+.+.+.++|+.+.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~L~~~~~~~~v~~~~~~ 109 (110)
T PF06480_consen 77 TTFYTPSIPSVDSFDEFLIEALVEKGVKYESVP 109 (110)
T ss_dssp T--EEEE-S-HHHHHHHHHHHHHHTT--TTT--
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHCCCccceec
Confidence 2222222221 22456777778888766543
No 216
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=3.5e-07 Score=92.66 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=83.9
Q ss_pred ccCCCceEECCCCChHHHHHHHHHHhcCC-------Ceee-eehhhHHHH------h-------hhcchhHHHHHHHHHH
Q 014798 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFS-ISGSEFVEM------F-------VGVGASRVRDLFKKAK 320 (418)
Q Consensus 262 ~~p~gVLL~GPPGTGKT~LArAIA~el~~-------pfi~-vs~sefve~------~-------vg~~~~~vr~lF~~A~ 320 (418)
+.|..+||+||+|+||+++|+++|..+-. +.=. -+|..+... + ...+...+|++.+.+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 45568999999999999999999986622 1000 011111000 0 0123456777766554
Q ss_pred h----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEE
Q 014798 321 E----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQV 396 (418)
Q Consensus 321 ~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I 396 (418)
. ....|++||++|++. .+..|.||+.+++ +..++++|..|+.++.|-|.+++ |.. .+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~ 162 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT--------------DAAANALLKTLEE--PPENTWFFLACREPARLLATLRS--RCR-LH 162 (334)
T ss_pred hccccCCceEEEEcchHhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--ccc-cc
Confidence 3 345699999999994 4578899999984 56678999999999999999998 775 46
Q ss_pred EecCch
Q 014798 397 KHVSLS 402 (418)
Q Consensus 397 ~v~~lP 402 (418)
.+ +.|
T Consensus 163 ~~-~~~ 167 (334)
T PRK07993 163 YL-APP 167 (334)
T ss_pred cC-CCC
Confidence 67 555
No 217
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.57 E-value=1.6e-07 Score=97.66 Aligned_cols=127 Identities=22% Similarity=0.297 Sum_probs=79.7
Q ss_pred ccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHh-
Q 014798 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF- 304 (418)
Q Consensus 229 ~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~- 304 (418)
.+.+++|.+...+.+.+.+..+.... .+++|+|++||||+++|+++.... +.||+.++|..+.+..
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~----------~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSD----------ITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCC----------CCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 45678888888887777776544332 369999999999999999997654 5799999999764332
Q ss_pred ----hhcch-------hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhc--CCC----CC
Q 014798 305 ----VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE----GN 367 (418)
Q Consensus 305 ----vg~~~-------~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emd--g~~----~~ 367 (418)
.|... ......|+.| ...+|||||||.+.. +.+..+.+++..-. ... ..
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~-----------~~q~~l~~~l~~~~~~~~~~~~~~~ 272 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDLPL-----------NLQAKLLRFLQERVIERLGGREEIP 272 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhCCH-----------HHHHHHHHHHhhCeEEeCCCCceee
Confidence 12100 1111223333 245999999999853 23334444443311 000 11
Q ss_pred CCeEEEEEeCCC
Q 014798 368 TGIIVIAATNRA 379 (418)
Q Consensus 368 ~~ViVIatTN~~ 379 (418)
.++.+|+||+..
T Consensus 273 ~~~rii~~~~~~ 284 (445)
T TIGR02915 273 VDVRIVCATNQD 284 (445)
T ss_pred eceEEEEecCCC
Confidence 257899999854
No 218
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=3.2e-08 Score=102.97 Aligned_cols=47 Identities=43% Similarity=0.671 Sum_probs=38.9
Q ss_pred CcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHh
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e 287 (418)
...|.||.|++.+|+.+..... ..+++|++||||||||+||+.+.+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA--------------GgHnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA--------------GGHNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh--------------cCCcEEEecCCCCchHHhhhhhccc
Confidence 4689999999999998866443 2348999999999999999998763
No 219
>PRK04132 replication factor C small subunit; Provisional
Probab=98.54 E-value=4.5e-07 Score=101.28 Aligned_cols=110 Identities=22% Similarity=0.268 Sum_probs=83.5
Q ss_pred ceEEC--CCCChHHHHHHHHHHhc-----CCCeeeeehhhHHHHhhhcchhHHHHHHHHHHhCC------CeEEEEcCCc
Q 014798 267 VLLVG--PPGTGKTLLAKAIAGEA-----GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA------PCIVFVDEID 333 (418)
Q Consensus 267 VLL~G--PPGTGKT~LArAIA~el-----~~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~~a------P~IIfIDEID 333 (418)
-+..| |++.|||++|+|+|+++ +.+++.+++++.. +...+|++...+.... ..|++|||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 45668 99999999999999997 5689999999842 2345777766544322 3699999999
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 334 AVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 334 al~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
.+.. ...+.|+..|+.+. ..+.+|++||.+..+.+++++ |+ ..+.+ ..|
T Consensus 641 ~Lt~--------------~AQnALLk~lEep~--~~~~FILi~N~~~kIi~tIrS--RC-~~i~F-~~l 689 (846)
T PRK04132 641 ALTQ--------------DAQQALRRTMEMFS--SNVRFILSCNYSSKIIEPIQS--RC-AIFRF-RPL 689 (846)
T ss_pred cCCH--------------HHHHHHHHHhhCCC--CCeEEEEEeCChhhCchHHhh--hc-eEEeC-CCC
Confidence 9942 35667888887543 457899999999999999998 76 46777 444
No 220
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.54 E-value=1.4e-07 Score=93.89 Aligned_cols=154 Identities=23% Similarity=0.213 Sum_probs=102.3
Q ss_pred ccccccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 216 SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 216 s~~~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
....-|++.+++-+.+|+++.++....+.+..+.-+.| +.|+|||||||||....+.|..+-.|.-
T Consensus 26 ~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lP------------h~L~YgPPGtGktsti~a~a~~ly~~~~-- 91 (360)
T KOG0990|consen 26 QYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLP------------HLLFYGPPGTGKTSTILANARDFYSPHP-- 91 (360)
T ss_pred ccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCC------------cccccCCCCCCCCCchhhhhhhhcCCCC--
Confidence 33445788889999999999999988877764332222 6999999999999999999998866411
Q ss_pred ehhhHHHHh--hhcchhHH---HHHHHHHHh-------CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcC
Q 014798 296 SGSEFVEMF--VGVGASRV---RDLFKKAKE-------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 363 (418)
Q Consensus 296 s~sefve~~--vg~~~~~v---r~lF~~A~~-------~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg 363 (418)
..+-..+.- ...+..-+ -..|+.++. ..+..|++||.|++.+. ..|+|-..+..
T Consensus 92 ~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~--------------AQnALRRviek 157 (360)
T KOG0990|consen 92 TTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD--------------AQNALRRVIEK 157 (360)
T ss_pred chhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHH--------------HHHHHHHHHHH
Confidence 111111211 11122222 245655553 26789999999999643 34555556665
Q ss_pred CCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 364 FEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 364 ~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
+..+ +.+..-+|.+..+.|+++. ||.+.=.- +++
T Consensus 158 ~t~n--~rF~ii~n~~~ki~pa~qs--Rctrfrf~-pl~ 191 (360)
T KOG0990|consen 158 YTAN--TRFATISNPPQKIHPAQQS--RCTRFRFA-PLT 191 (360)
T ss_pred hccc--eEEEEeccChhhcCchhhc--ccccCCCC-CCC
Confidence 5544 5566778999999999997 77654333 444
No 221
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.53 E-value=5.1e-07 Score=94.61 Aligned_cols=150 Identities=24% Similarity=0.372 Sum_probs=90.7
Q ss_pred ccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH--
Q 014798 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-- 303 (418)
Q Consensus 229 ~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~-- 303 (418)
.+.+++|.+...+++.+.+..+.... ..++++|++|||||++|+++.... +.||+.++|+.+.+.
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~----------~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSS----------ISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccC----------CeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 45678999888888887776554433 369999999999999999998765 579999999876332
Q ss_pred ---hhhcch------hH-HHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhc-----CC-CCC
Q 014798 304 ---FVGVGA------SR-VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD-----GF-EGN 367 (418)
Q Consensus 304 ---~vg~~~------~~-vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emd-----g~-~~~ 367 (418)
..|... .. ....|+.+ ....+||||||.+.. ..+..+.+++..-. +. ...
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l~~-----------~~q~~L~~~l~~~~~~~~~~~~~~~ 271 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDMPL-----------DVQTRLLRVLADGQFYRVGGYAPVK 271 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccCCH-----------HHHHHHHHHHhcCcEEeCCCCCeEE
Confidence 122110 00 01123332 245899999999853 22333334433211 00 011
Q ss_pred CCeEEEEEeCCC-------CCcchhhhCCCcc-ceEEEecCchHH
Q 014798 368 TGIIVIAATNRA-------DILDSALLRPGRF-DRQVKHVSLSLM 404 (418)
Q Consensus 368 ~~ViVIatTN~~-------~~LD~ALlRpGRF-dr~I~v~~lP~R 404 (418)
.++.+|+||+.. ..+.+.|.. || ...|.+|++-+|
T Consensus 272 ~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR 314 (469)
T PRK10923 272 VDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRER 314 (469)
T ss_pred eeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccc
Confidence 247899999853 234455555 55 345555444444
No 222
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.52 E-value=4.8e-07 Score=79.19 Aligned_cols=110 Identities=23% Similarity=0.274 Sum_probs=64.4
Q ss_pred ceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHhh----------------------hcc-h-hHHHHHHHHH
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV----------------------GVG-A-SRVRDLFKKA 319 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~v----------------------g~~-~-~~vr~lF~~A 319 (418)
++|+||||+|||++++.++..+ +.++++++......... ... . ...+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 56777776654322110 000 0 0111224455
Q ss_pred HhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 320 ~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
....|.+++|||+..+.........+......+.+..++..+. ..++.+|++++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 6677899999999988654221001122233344555555543 23566777776544
No 223
>PF13173 AAA_14: AAA domain
Probab=98.51 E-value=5.9e-07 Score=78.06 Aligned_cols=69 Identities=25% Similarity=0.315 Sum_probs=48.6
Q ss_pred CCceEECCCCChHHHHHHHHHHhcC--CCeeeeehhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCccc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAV 335 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~--~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal 335 (418)
+.++|+||.|+|||++++.++.+.. ..++++++.+....-..... +.+.+.+.....+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 3589999999999999999998876 78888888876542111110 223333322235689999999887
No 224
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.50 E-value=9.2e-07 Score=89.12 Aligned_cols=125 Identities=18% Similarity=0.228 Sum_probs=85.6
Q ss_pred ccCCCceEECCCCChHHHHHHHHHHhcCC-----------------------CeeeeehhhHHHHhhhcchhHHHHHHHH
Q 014798 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----------------------PFFSISGSEFVEMFVGVGASRVRDLFKK 318 (418)
Q Consensus 262 ~~p~gVLL~GPPGTGKT~LArAIA~el~~-----------------------pfi~vs~sefve~~vg~~~~~vr~lF~~ 318 (418)
+.|.++||+||.|+||+.+|+++|..+-. .|+.+...+- . ...+...+|++.+.
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~--~~I~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE-G--KSITVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC-C--CcCCHHHHHHHHHH
Confidence 45568999999999999999999986621 1222211100 0 00233466776655
Q ss_pred HHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccce
Q 014798 319 AKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 394 (418)
Q Consensus 319 A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr 394 (418)
+.. ....|++||++|.+. ....|.||+-+++ +.+++++|..|+.++.|-|.+++ |..
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~--------------~~AaNaLLKtLEE--Pp~~t~fiL~t~~~~~lLpTI~S--RCq- 160 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMN--------------ESASNALLKTLEE--PAPNCLFLLVTHNQKRLLPTIVS--RCQ- 160 (319)
T ss_pred HhhCcccCCceEEEecchhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhChHHHHh--cce-
Confidence 533 334699999999994 4577889999984 55678999999999999999998 774
Q ss_pred EEEecCchHHHHHHH
Q 014798 395 QVKHVSLSLMLWFLK 409 (418)
Q Consensus 395 ~I~v~~lP~R~~IL~ 409 (418)
.+.+ +.|...++.+
T Consensus 161 ~~~~-~~~~~~~~~~ 174 (319)
T PRK06090 161 QWVV-TPPSTAQAMQ 174 (319)
T ss_pred eEeC-CCCCHHHHHH
Confidence 5667 5554444433
No 225
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.49 E-value=3.9e-07 Score=78.11 Aligned_cols=96 Identities=21% Similarity=0.352 Sum_probs=58.6
Q ss_pred CCceEECCCCChHHHHHHHHHHhc--------CCCeeeeehhhHH------HHh---hh------cchhHHHHHHHH-HH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISGSEFV------EMF---VG------VGASRVRDLFKK-AK 320 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el--------~~pfi~vs~sefv------e~~---vg------~~~~~vr~lF~~-A~ 320 (418)
+.++++||||+|||++++.++.+. ..+++.+++.... ... .+ .....+.+.+.+ ..
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 468999999999999999999877 6788888776543 111 11 112233333333 33
Q ss_pred hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 321 ~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
.....+|+|||+|.+. + ...++.|...++ ..++-+|.+..
T Consensus 85 ~~~~~~lviDe~~~l~-~------------~~~l~~l~~l~~----~~~~~vvl~G~ 124 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-S------------DEFLEFLRSLLN----ESNIKVVLVGT 124 (131)
T ss_dssp HCTEEEEEEETTHHHH-T------------HHHHHHHHHHTC----SCBEEEEEEES
T ss_pred hcCCeEEEEeChHhcC-C------------HHHHHHHHHHHh----CCCCeEEEEEC
Confidence 4444599999999973 1 446666665555 34445554444
No 226
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=7.9e-07 Score=89.83 Aligned_cols=126 Identities=18% Similarity=0.255 Sum_probs=81.3
Q ss_pred ccCCCceEECCCCChHHHHHHHHHHhcCC--------C-----------------eeeeehhhH---HHH-hhhcchhHH
Q 014798 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGV--------P-----------------FFSISGSEF---VEM-FVGVGASRV 312 (418)
Q Consensus 262 ~~p~gVLL~GPPGTGKT~LArAIA~el~~--------p-----------------fi~vs~sef---ve~-~vg~~~~~v 312 (418)
+.|..+||+||+|+|||++|+++|+.+.. | |+.++...- ..+ ....+...+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 56778999999999999999999987632 1 222322100 000 001234567
Q ss_pred HHHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhC
Q 014798 313 RDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLR 388 (418)
Q Consensus 313 r~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlR 388 (418)
|++.+.+.. ....|++||++|.+. ....+.+++.++... .++.+|.+|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld--------------~~a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN--------------LQAANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC--------------HHHHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH
Confidence 888777754 334699999999984 234555666666543 346788899999999999887
Q ss_pred CCccceEEEecCchHHHHH
Q 014798 389 PGRFDRQVKHVSLSLMLWF 407 (418)
Q Consensus 389 pGRFdr~I~v~~lP~R~~I 407 (418)
|. ..+.+ +.|...++
T Consensus 163 --Rc-~~~~~-~~~~~~~~ 177 (325)
T PRK08699 163 --RC-RKMVL-PAPSHEEA 177 (325)
T ss_pred --Hh-hhhcC-CCCCHHHH
Confidence 66 45666 44533333
No 227
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.46 E-value=2.2e-07 Score=96.76 Aligned_cols=127 Identities=27% Similarity=0.388 Sum_probs=78.6
Q ss_pred ccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH--
Q 014798 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-- 303 (418)
Q Consensus 229 ~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~-- 303 (418)
.+.++.|.+....++.+.+..+.... ..++++|++||||+++|+++.... +.||+.++|..+.+.
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~~----------~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQ----------ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCCC----------cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 45568888887777777666555443 269999999999999999997654 679999999876432
Q ss_pred ---hhhcchh-------HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhc--CCCC----C
Q 014798 304 ---FVGVGAS-------RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----N 367 (418)
Q Consensus 304 ---~vg~~~~-------~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emd--g~~~----~ 367 (418)
+.|.... .....|..| ...+|||||||.+... .+..+..++..-. .... .
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l~~~-----------~q~~L~~~l~~~~~~~~~~~~~~~ 276 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEMPLV-----------LQAKLLRILQEREFERIGGHQTIK 276 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhCCHH-----------HHHHHHHHHhcCcEEeCCCCceee
Confidence 2221100 001123333 2359999999999532 2333333333210 0011 1
Q ss_pred CCeEEEEEeCCC
Q 014798 368 TGIIVIAATNRA 379 (418)
Q Consensus 368 ~~ViVIatTN~~ 379 (418)
.++.+|+|||..
T Consensus 277 ~~~rii~~t~~~ 288 (457)
T PRK11361 277 VDIRIIAATNRD 288 (457)
T ss_pred eceEEEEeCCCC
Confidence 347899999853
No 228
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.45 E-value=1.6e-06 Score=80.52 Aligned_cols=135 Identities=27% Similarity=0.394 Sum_probs=66.7
Q ss_pred CceEECCCCChHHHHHHHHHHhcCC---Ceeeeeh-hh----HHHHh-------------hh-----------------c
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGV---PFFSISG-SE----FVEMF-------------VG-----------------V 307 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~---pfi~vs~-se----fve~~-------------vg-----------------~ 307 (418)
.++|+||.|+|||+|++.+..+... ..+++.. .. ....+ .+ .
T Consensus 22 ~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (234)
T PF01637_consen 22 HILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSED 101 (234)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG
T ss_pred EEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhh
Confidence 6999999999999999999988722 2222211 10 00000 10 1
Q ss_pred chhHHHHHHHHHHhCC-CeEEEEcCCcccc-cccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc---
Q 014798 308 GASRVRDLFKKAKENA-PCIVFVDEIDAVG-RQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL--- 382 (418)
Q Consensus 308 ~~~~vr~lF~~A~~~a-P~IIfIDEIDal~-~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L--- 382 (418)
....+..+++...+.. ..||+|||+|.+. ... +....+..|...++......++.+|.++......
T Consensus 102 ~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~ 172 (234)
T PF01637_consen 102 SFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---------EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEF 172 (234)
T ss_dssp -G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---------TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---------chHHHHHHHHHHHhhccccCCceEEEECCchHHHHHh
Confidence 2334556666655443 4899999999997 211 1234455555555543344455555444432111
Q ss_pred ---chhhhCCCccceEEEecCch--HHHHHHHHhh
Q 014798 383 ---DSALLRPGRFDRQVKHVSLS--LMLWFLKTHS 412 (418)
Q Consensus 383 ---D~ALlRpGRFdr~I~v~~lP--~R~~IL~~~l 412 (418)
+..+. +|+.. +.+.+++ +-.++++..+
T Consensus 173 ~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~ 204 (234)
T PF01637_consen 173 LDDKSPLF--GRFSH-IELKPLSKEEAREFLKELF 204 (234)
T ss_dssp T-TTSTTT--T---E-EEE----HHHHHHHHHHHH
T ss_pred hcccCccc--cccce-EEEeeCCHHHHHHHHHHHH
Confidence 11222 47766 7775665 5566665543
No 229
>PRK15115 response regulator GlrR; Provisional
Probab=98.41 E-value=5.3e-07 Score=93.69 Aligned_cols=134 Identities=27% Similarity=0.433 Sum_probs=77.9
Q ss_pred cccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHhh---
Q 014798 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV--- 305 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~v--- 305 (418)
.+.|......++.+.+..+...+ ..++|+|++|||||++|+++.... +.||+.++|..+.+...
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~----------~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSD----------VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCC----------CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH
Confidence 45666666665555555443332 269999999999999999997654 67999999987643221
Q ss_pred --hcch-------hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhc--CCCC----CCCe
Q 014798 306 --GVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----NTGI 370 (418)
Q Consensus 306 --g~~~-------~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emd--g~~~----~~~V 370 (418)
|... .....+|+.+ ...+|||||||.+... .+..+..++..-. .... ..++
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l~~~-----------~q~~L~~~l~~~~~~~~g~~~~~~~~~ 270 (444)
T PRK15115 205 LFGHARGAFTGAVSNREGLFQAA---EGGTLFLDEIGDMPAP-----------LQVKLLRVLQERKVRPLGSNRDIDIDV 270 (444)
T ss_pred hcCCCcCCCCCCccCCCCcEEEC---CCCEEEEEccccCCHH-----------HHHHHHHHHhhCCEEeCCCCceeeeeE
Confidence 1100 0001122222 2359999999998532 2333434433211 0111 1257
Q ss_pred EEEEEeCCCCCcchhhhCCCcc
Q 014798 371 IVIAATNRADILDSALLRPGRF 392 (418)
Q Consensus 371 iVIatTN~~~~LD~ALlRpGRF 392 (418)
.+|+||+.. ++..+. .|+|
T Consensus 271 rii~~~~~~--l~~~~~-~~~f 289 (444)
T PRK15115 271 RIISATHRD--LPKAMA-RGEF 289 (444)
T ss_pred EEEEeCCCC--HHHHHH-cCCc
Confidence 899999853 444433 3566
No 230
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.38 E-value=9.5e-07 Score=82.59 Aligned_cols=111 Identities=22% Similarity=0.291 Sum_probs=64.3
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHH-HHhhhc----------------------chhHHHHHHH
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV-EMFVGV----------------------GASRVRDLFK 317 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefv-e~~vg~----------------------~~~~vr~lF~ 317 (418)
..-++++||||||||+++..+|.+. +.+.++++..++. +.+... ....+..+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~ 91 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSK 91 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHH
Confidence 3448899999999999999887543 6678888876521 111110 0111333444
Q ss_pred HHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 318 KAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 318 ~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
.+.++.+++|+||-+.++.+..... ....+.+.+.+++..+..+....++.++++..
T Consensus 92 ~~~~~~~~lvVIDSis~l~~~~~~~---~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 92 FIDRDSASLVVVDSFTALYRLELSD---DRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHhhcCccEEEEeCcHHHhHHHhCC---ccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 4555678999999999986432111 11122334444444443333345677777654
No 231
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.36 E-value=7e-07 Score=90.94 Aligned_cols=68 Identities=44% Similarity=0.679 Sum_probs=53.8
Q ss_pred cccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcC--CCeeeeehhhHHH
Q 014798 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVE 302 (418)
Q Consensus 228 ~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~--~pfi~vs~sefve 302 (418)
...+.++|+.++++..--+++.++..+. ..+++||.||||||||.||-++|+++| +||..++++++.+
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~-------aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKI-------AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred eccccccChHHHHHHHHHHHHHHhcccc-------cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 3456899999999999989998877652 245899999999999999999999995 8999999999754
No 232
>PF05729 NACHT: NACHT domain
Probab=98.34 E-value=6.8e-06 Score=72.50 Aligned_cols=137 Identities=18% Similarity=0.277 Sum_probs=70.4
Q ss_pred CceEECCCCChHHHHHHHHHHhc------C--C-CeeeeehhhHHHH---------h---hhcchhHHHHH-HHHHHhCC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA------G--V-PFFSISGSEFVEM---------F---VGVGASRVRDL-FKKAKENA 323 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el------~--~-pfi~vs~sefve~---------~---vg~~~~~vr~l-F~~A~~~a 323 (418)
-++|+|+||+|||++++.++.++ . . -++++.+.+.... . .........+. ...+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 47899999999999999998755 1 1 1334444433221 1 11111222221 22234456
Q ss_pred CeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHH-HhcCCCCCCCeEEEEEeCCCCC--cchhhhCCCccceEEEecC
Q 014798 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT-EMDGFEGNTGIIVIAATNRADI--LDSALLRPGRFDRQVKHVS 400 (418)
Q Consensus 324 P~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~-emdg~~~~~~ViVIatTN~~~~--LD~ALlRpGRFdr~I~v~~ 400 (418)
+.+|+||.+|.+...... .+... ...++. .+.. ....++.++.|+..... +...+.. ...+.+.+
T Consensus 82 ~~llilDglDE~~~~~~~------~~~~~-~~~~l~~l~~~-~~~~~~~liit~r~~~~~~~~~~~~~----~~~~~l~~ 149 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS------QERQR-LLDLLSQLLPQ-ALPPGVKLIITSRPRAFPDLRRRLKQ----AQILELEP 149 (166)
T ss_pred ceEEEEechHhcccchhh------hHHHH-HHHHHHHHhhh-ccCCCCeEEEEEcCChHHHHHHhcCC----CcEEEECC
Confidence 789999999999653211 11122 222222 2222 12234555555543222 2222222 13456644
Q ss_pred ch--HHHHHHHHhhcc
Q 014798 401 LS--LMLWFLKTHSQY 414 (418)
Q Consensus 401 lP--~R~~IL~~~l~~ 414 (418)
+. +..++++.++++
T Consensus 150 ~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 150 FSEEDIKQYLRKYFSN 165 (166)
T ss_pred CCHHHHHHHHHHHhhc
Confidence 44 888888887764
No 233
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.33 E-value=1.9e-06 Score=87.07 Aligned_cols=115 Identities=20% Similarity=0.262 Sum_probs=71.0
Q ss_pred CccCCCceEECCCCChHHHHHHHHHHhcCCCe-eeeehhhHHHH-------hhhcchhHHHHHHHHHHhCCCeEEEEcCC
Q 014798 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-FSISGSEFVEM-------FVGVGASRVRDLFKKAKENAPCIVFVDEI 332 (418)
Q Consensus 261 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf-i~vs~sefve~-------~vg~~~~~vr~lF~~A~~~aP~IIfIDEI 332 (418)
..+|+|++|||+.|+|||+|.-..-..+..+- ..+...+|+-. ..|+.. -+..+-... ...-.|++|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~d-pl~~iA~~~-~~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTD-PLPPIADEL-AAETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCC-ccHHHHHHH-HhcCCEEEeeee
Confidence 34679999999999999999999988775433 34444444422 223221 111111111 122359999998
Q ss_pred cccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-CCCcchhhhCCCcc
Q 014798 333 DAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRF 392 (418)
Q Consensus 333 Dal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~-~~~LD~ALlRpGRF 392 (418)
..- +......+..|++++- ..||++++|+|. |+.|-+.=+...||
T Consensus 140 ~Vt-----------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~LY~dGlqR~~F 185 (367)
T COG1485 140 EVT-----------DIADAMILGRLLEALF----ARGVVLVATSNTAPDNLYKDGLQRERF 185 (367)
T ss_pred eec-----------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHhcccchhHHhh
Confidence 542 2334567888888875 358999999994 66654443333333
No 234
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.32 E-value=1.4e-06 Score=90.95 Aligned_cols=126 Identities=22% Similarity=0.360 Sum_probs=77.8
Q ss_pred cccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHh--
Q 014798 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF-- 304 (418)
Q Consensus 230 f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~-- 304 (418)
..+++|......++.+.+..+.... ..+++.|.+||||+++|+++.... +.||+.++|..+.+..
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~~----------~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRSD----------ITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCcC----------CeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 3457888888887777666544333 369999999999999999997754 6799999998764321
Q ss_pred ---hhcchh-------HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcC--CC----CCC
Q 014798 305 ---VGVGAS-------RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--FE----GNT 368 (418)
Q Consensus 305 ---vg~~~~-------~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg--~~----~~~ 368 (418)
.|.... .....|+. ...++|||||||.+.. +.+..+.+++..-.- .. ...
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~ei~~l~~-----------~~q~~ll~~l~~~~~~~~~~~~~~~~ 268 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQ---ADGGTLFLDEIGDMPL-----------DAQTRLLRVLADGEFYRVGGRTPIKV 268 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEE---CCCCeEEEEchhhCCH-----------HHHHHHHHHHhcCcEEECCCCceeee
Confidence 221100 00111222 2356999999999853 233344444433110 01 112
Q ss_pred CeEEEEEeCCC
Q 014798 369 GIIVIAATNRA 379 (418)
Q Consensus 369 ~ViVIatTN~~ 379 (418)
++.+|++|+..
T Consensus 269 ~~rii~~~~~~ 279 (463)
T TIGR01818 269 DVRIVAATHQN 279 (463)
T ss_pred eeEEEEeCCCC
Confidence 57889988753
No 235
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.32 E-value=6.5e-07 Score=90.34 Aligned_cols=69 Identities=43% Similarity=0.687 Sum_probs=57.5
Q ss_pred cccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc--CCCeeeeehhhHHHH
Q 014798 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA--GVPFFSISGSEFVEM 303 (418)
Q Consensus 228 ~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el--~~pfi~vs~sefve~ 303 (418)
..-+-++|+.++.+..--+++.++.... ..+++|+.||||||||.||-++|+++ ++||..++++++.+.
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~-------aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~ 106 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKM-------AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSL 106 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcc-------cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeee
Confidence 3446789999999988777887776542 34689999999999999999999999 489999999987643
No 236
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.31 E-value=7.3e-06 Score=79.07 Aligned_cols=125 Identities=21% Similarity=0.238 Sum_probs=76.1
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGG 345 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~ 345 (418)
+..++||.|||||..+|++|..+|.+++.++|++-.+ ...+..+|.-+.+. -+.+++||++.+-
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~--------- 97 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLS--------- 97 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSS---------
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhhh---------
Confidence 6789999999999999999999999999999998544 34455666554443 3699999999983
Q ss_pred CChHHHHHHHHHHHHh----cC-----------CCCCCCeEEEEEeCC----CCCcchhhhCCCccceEEEecCchHHHH
Q 014798 346 GNDEREQTLNQLLTEM----DG-----------FEGNTGIIVIAATNR----ADILDSALLRPGRFDRQVKHVSLSLMLW 406 (418)
Q Consensus 346 ~~~e~~~~L~~LL~em----dg-----------~~~~~~ViVIatTN~----~~~LD~ALlRpGRFdr~I~v~~lP~R~~ 406 (418)
.+.-.++.+.+..+ .. ..-+.+.-++.|.|. ...|++.|+. -| |-+.+ ..|+...
T Consensus 98 --~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam-~~PD~~~ 171 (231)
T PF12774_consen 98 --EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAM-MVPDLSL 171 (231)
T ss_dssp --HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE---S--HHH
T ss_pred --HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEE-eCCCHHH
Confidence 22233333333332 11 011234556667773 3468888765 44 77888 8898888
Q ss_pred HHHHhh
Q 014798 407 FLKTHS 412 (418)
Q Consensus 407 IL~~~l 412 (418)
|.++.+
T Consensus 172 I~ei~L 177 (231)
T PF12774_consen 172 IAEILL 177 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888765
No 237
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.28 E-value=8.9e-06 Score=78.56 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.9
Q ss_pred CceEECCCCChHHHHHHHHHHhcC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~ 289 (418)
.++|+||+|+|||++++.++.++.
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcC
Confidence 488999999999999999999875
No 238
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.27 E-value=2.5e-06 Score=91.22 Aligned_cols=71 Identities=24% Similarity=0.268 Sum_probs=55.4
Q ss_pred cccccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeee
Q 014798 217 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (418)
Q Consensus 217 ~~~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~ 294 (418)
....|+++..+.+.+|++-...-.++++.+++....+. ...+-+||+||||||||++++++|++++..+..
T Consensus 5 ~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~-------~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 5 ESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGS-------SPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred ccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccC-------CCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 45679999999999999998877777777777522221 122357889999999999999999999876554
No 239
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.27 E-value=7.2e-07 Score=87.95 Aligned_cols=155 Identities=19% Similarity=0.318 Sum_probs=73.8
Q ss_pred CcccccccCchHHHHHHHHHHHHh-cCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCC-C--eeeeehhhHHH
Q 014798 227 GVTFDDVAGVDEAKQDFMEVVEFL-KKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-P--FFSISGSEFVE 302 (418)
Q Consensus 227 ~~~f~dV~G~de~k~eL~e~v~~l-~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~-p--fi~vs~sefve 302 (418)
++.|.++.=.-..-.....+++.+ .+.. ++||+||+|||||.+++..-.++.- . ...++++...
T Consensus 6 ~~~~~~~~VpT~dt~r~~~ll~~l~~~~~-----------pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T- 73 (272)
T PF12775_consen 6 EMPFNEILVPTVDTVRYSYLLDLLLSNGR-----------PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT- 73 (272)
T ss_dssp -------T---HHHHHHHHHHHHHHHCTE-----------EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH-
T ss_pred ccccceEEeCcHHHHHHHHHHHHHHHcCC-----------cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC-
Confidence 345555444333333444555553 3332 7999999999999999988766532 2 2234443321
Q ss_pred HhhhcchhHHHHHHHHH-----------HhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhc---CCCCC-
Q 014798 303 MFVGVGASRVRDLFKKA-----------KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD---GFEGN- 367 (418)
Q Consensus 303 ~~vg~~~~~vr~lF~~A-----------~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emd---g~~~~- 367 (418)
.+..+.++++.. ..+..+|+||||+..-..+. ...+...+||.++- |+...
T Consensus 74 -----ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~---------ygtq~~iElLRQ~i~~~g~yd~~ 139 (272)
T PF12775_consen 74 -----TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPDK---------YGTQPPIELLRQLIDYGGFYDRK 139 (272)
T ss_dssp -----HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S---T---------TS--HHHHHHHHHHHCSEEECTT
T ss_pred -----CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCCCC---------CCCcCHHHHHHHHHHhcCcccCC
Confidence 111122222111 11345799999997754332 11223345555531 22221
Q ss_pred -------CCeEEEEEeCCCC---CcchhhhCCCccceEEEecCch---HHHHHHHHh
Q 014798 368 -------TGIIVIAATNRAD---ILDSALLRPGRFDRQVKHVSLS---LMLWFLKTH 411 (418)
Q Consensus 368 -------~~ViVIatTN~~~---~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~ 411 (418)
.++.++||+|... .+++.++| .| ..+.+ +.| .-..|+...
T Consensus 140 ~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~-~~p~~~sl~~If~~i 192 (272)
T PF12775_consen 140 KLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNI-PYPSDESLNTIFSSI 192 (272)
T ss_dssp TTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE-----TCCHHHHHHHHH
T ss_pred CcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEe-cCCChHHHHHHHHHH
Confidence 3588889988543 47788887 66 35667 777 444444433
No 240
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.24 E-value=1.4e-06 Score=84.35 Aligned_cols=77 Identities=27% Similarity=0.367 Sum_probs=46.0
Q ss_pred chhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCCh-HHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhh
Q 014798 308 GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGND-EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 386 (418)
Q Consensus 308 ~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~-e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~AL 386 (418)
|..+.|-.+..|....|.|+++||--... +. .+....++++.. +...+..|+..|+ ++++|+
T Consensus 133 GGMrQRVaiARAL~~~P~lLLlDEPFgAL----------DalTR~~lq~~l~~l----w~~~~~TvllVTH---di~EAv 195 (248)
T COG1116 133 GGMRQRVAIARALATRPKLLLLDEPFGAL----------DALTREELQDELLRL----WEETRKTVLLVTH---DVDEAV 195 (248)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEcCCcchh----------hHHHHHHHHHHHHHH----HHhhCCEEEEEeC---CHHHHH
Confidence 44566667777888899999999943221 11 122233333333 3344566777777 455565
Q ss_pred h----------CCCccceEEEecCch
Q 014798 387 L----------RPGRFDRQVKHVSLS 402 (418)
Q Consensus 387 l----------RpGRFdr~I~v~~lP 402 (418)
. +|+|.-..+.+ ++|
T Consensus 196 ~LsdRivvl~~~P~~i~~~~~i-~l~ 220 (248)
T COG1116 196 YLADRVVVLSNRPGRIGEELEI-DLP 220 (248)
T ss_pred hhhCEEEEecCCCcceeeEEec-CCC
Confidence 4 66777667777 666
No 241
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.21 E-value=1.3e-06 Score=88.22 Aligned_cols=129 Identities=26% Similarity=0.375 Sum_probs=85.9
Q ss_pred CCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHh---cCCCeeeeehhhHH
Q 014798 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFV 301 (418)
Q Consensus 225 ~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~vs~sefv 301 (418)
.....|+.+++.+...+.+.+....+..-+ -.+||.|..||||-++|||+-.. ...||+.++|..+-
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA~k~AmlD----------APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQAQKLAMLD----------APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccccchHHHhhccHHHHHHHHHHHHhhccC----------CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 345678888888877776665544433222 14899999999999999998543 37899999999765
Q ss_pred HH-----hhhcc--hhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC--------C
Q 014798 302 EM-----FVGVG--ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------G 366 (418)
Q Consensus 302 e~-----~vg~~--~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~--------~ 366 (418)
+. ..|.. .+.-..+|+.|... .+|+|||..+.+ ..+..+..+|+ ||-- .
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEmSp-----------~lQaKLLRFL~--DGtFRRVGee~Ev 331 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEMSP-----------RLQAKLLRFLN--DGTFRRVGEDHEV 331 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhcCH-----------HHHHHHHHHhc--CCceeecCCcceE
Confidence 43 33433 24455788888665 899999977643 33334444443 2211 1
Q ss_pred CCCeEEEEEeCCC
Q 014798 367 NTGIIVIAATNRA 379 (418)
Q Consensus 367 ~~~ViVIatTN~~ 379 (418)
.-+|.||+||..+
T Consensus 332 ~vdVRVIcatq~n 344 (511)
T COG3283 332 HVDVRVICATQVN 344 (511)
T ss_pred EEEEEEEeccccc
Confidence 2259999999854
No 242
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.21 E-value=1.1e-05 Score=73.53 Aligned_cols=103 Identities=22% Similarity=0.297 Sum_probs=61.2
Q ss_pred ceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHhh------hcc-----------------------hh----
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GVG-----------------------AS---- 310 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~v------g~~-----------------------~~---- 310 (418)
++++||||||||+++..++.+. |.++++++..+-.+.+. |.. ..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 6899999999999999886543 77787777543222110 100 00
Q ss_pred -HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 311 -RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 311 -~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
....+...+....|.+++|||+..+... ........+..++..+.. .++.+|.+++...
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~~~ 141 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALKR----FGVTTLLTSEQSG 141 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHHH----CCCEEEEEecccc
Confidence 0133444445677999999999887531 112233344556655542 2456677676443
No 243
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.19 E-value=2.9e-06 Score=87.83 Aligned_cols=93 Identities=27% Similarity=0.446 Sum_probs=60.4
Q ss_pred cccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHh---cCCCeeeeehhhHHHHh----
Q 014798 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMF---- 304 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~vs~sefve~~---- 304 (418)
.+.|.......+.+.+..+.... ..++++|.+||||+++|+++... .+.||+.++|+.+.+..
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~----------~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSE----------ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCC----------CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 45676776666666555544332 36999999999999999999654 46799999998654322
Q ss_pred -hhcchh-------HHHHHHHHHHhCCCeEEEEcCCccccc
Q 014798 305 -VGVGAS-------RVRDLFKKAKENAPCIVFVDEIDAVGR 337 (418)
Q Consensus 305 -vg~~~~-------~vr~lF~~A~~~aP~IIfIDEIDal~~ 337 (418)
.|.... ....+|..| ..++|||||||.+..
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ldei~~l~~ 247 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDISP 247 (441)
T ss_pred hcCCCCCCcCCCCcCCCCceeEC---CCCEEEEeccccCCH
Confidence 121100 001122222 356999999999953
No 244
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.16 E-value=2e-05 Score=91.79 Aligned_cols=152 Identities=19% Similarity=0.324 Sum_probs=87.3
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCe---eeeehh----
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF---FSISGS---- 298 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pf---i~vs~s---- 298 (418)
+...+++++|.++..+++.+.+..- ....+-+-|+||+|+||||||+++++.....| ++++..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l~----------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHLE----------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHccc----------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 3456889999999998888776421 11123588999999999999999988764433 111110
Q ss_pred ---h------------------HHHHhhhcc---hhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHH
Q 014798 299 ---E------------------FVEMFVGVG---ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 354 (418)
Q Consensus 299 ---e------------------fve~~vg~~---~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L 354 (418)
. +.....+.. .... ...++...+.+.+|++||+|.. ..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~-~~~~~~L~~krvLLVLDdv~~~----------------~~l 311 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHL-GAMEERLKHRKVLIFIDDLDDQ----------------DVL 311 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCH-HHHHHHHhCCeEEEEEeCCCCH----------------HHH
Confidence 0 000000000 0000 1122223456789999998653 234
Q ss_pred HHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch---HHHHHHHHhh
Q 014798 355 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS---LMLWFLKTHS 412 (418)
Q Consensus 355 ~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP---~R~~IL~~~l 412 (418)
..+....+.+ ..+-.||.||...+. ++....++.+.+ +.| +..++|..++
T Consensus 312 ~~L~~~~~~~--~~GsrIIiTTrd~~v-----l~~~~~~~~~~v-~~l~~~ea~~LF~~~A 364 (1153)
T PLN03210 312 DALAGQTQWF--GSGSRIIVITKDKHF-----LRAHGIDHIYEV-CLPSNELALEMFCRSA 364 (1153)
T ss_pred HHHHhhCccC--CCCcEEEEEeCcHHH-----HHhcCCCeEEEe-cCCCHHHHHHHHHHHh
Confidence 4444333322 234567777775433 332356778888 666 6677777765
No 245
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.15 E-value=9e-06 Score=79.90 Aligned_cols=153 Identities=17% Similarity=0.227 Sum_probs=101.2
Q ss_pred ccccCCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-C--CCe----
Q 014798 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-G--VPF---- 292 (418)
Q Consensus 220 ~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-~--~pf---- 292 (418)
+|.+++.+-+++.+.+.++...++......-.-| ++++|||+|+||.|.+.|+-+++ | ++=
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~P------------Hll~yGPSGaGKKTrimclL~elYG~gveklki~ 69 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFP------------HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIE 69 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCC------------eEEEECCCCCCchhhHHHHHHHHhCCCchheeee
Confidence 5677778888999988888888777655522223 59999999999999999998876 2 211
Q ss_pred ----------------------eeeehhhHHHHhhhc-chhHHHHHHHHHHhCC---------CeEEEEcCCcccccccC
Q 014798 293 ----------------------FSISGSEFVEMFVGV-GASRVRDLFKKAKENA---------PCIVFVDEIDAVGRQRG 340 (418)
Q Consensus 293 ----------------------i~vs~sefve~~vg~-~~~~vr~lF~~A~~~a---------P~IIfIDEIDal~~~r~ 340 (418)
+.++.|| .|. ..--+.+++.+..+.. -.+++|.|.|.+.++
T Consensus 70 ~~t~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~d-- 142 (351)
T KOG2035|consen 70 TRTFTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRD-- 142 (351)
T ss_pred eEEEecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHH--
Confidence 1222222 121 2233556665544332 359999999999643
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCchHHHHHHH
Q 014798 341 TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLSLMLWFLK 409 (418)
Q Consensus 341 ~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP~R~~IL~ 409 (418)
....|-.-|+.+.. .+.+|..+|....+-+++++ |. ..|.+ +.|.-++|..
T Consensus 143 ------------AQ~aLRRTMEkYs~--~~RlIl~cns~SriIepIrS--RC-l~iRv-paps~eeI~~ 193 (351)
T KOG2035|consen 143 ------------AQHALRRTMEKYSS--NCRLILVCNSTSRIIEPIRS--RC-LFIRV-PAPSDEEITS 193 (351)
T ss_pred ------------HHHHHHHHHHHHhc--CceEEEEecCcccchhHHhh--he-eEEeC-CCCCHHHHHH
Confidence 33456666766654 46788889988888889988 54 34666 6674444433
No 246
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.12 E-value=1.2e-05 Score=84.66 Aligned_cols=75 Identities=25% Similarity=0.422 Sum_probs=55.7
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHhh------hc--------chhHHHHHHHHHHhCCCeE
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV--------GASRVRDLFKKAKENAPCI 326 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~v------g~--------~~~~vr~lF~~A~~~aP~I 326 (418)
..-++|+|+||+|||+|+..+|... +.+++++++.+-.+... |. .+..+.++++...+..|.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~l 159 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPDL 159 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCE
Confidence 3448899999999999999998755 67888988776544321 11 1234567777777778999
Q ss_pred EEEcCCcccccc
Q 014798 327 VFVDEIDAVGRQ 338 (418)
Q Consensus 327 IfIDEIDal~~~ 338 (418)
|+||+|..+...
T Consensus 160 VVIDSIq~l~~~ 171 (446)
T PRK11823 160 VVIDSIQTMYSP 171 (446)
T ss_pred EEEechhhhccc
Confidence 999999988653
No 247
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.09 E-value=1.3e-05 Score=86.52 Aligned_cols=154 Identities=25% Similarity=0.278 Sum_probs=85.3
Q ss_pred cccCchHHHHHHHHHHHHhcCchhhhhcC-CccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeeh--hhHHHHhhhcc
Q 014798 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIG-ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG--SEFVEMFVGVG 308 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~l~~p~~~~~lG-~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~--sefve~~vg~~ 308 (418)
.|.|+|.+|+.+.=.+---.+. .+...| .+..-++||+|.||||||.+.+.+++-+..-.+ .++ +.- +|.+
T Consensus 430 sIye~edvKkglLLqLfGGt~k-~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkGsSa----vGLT 503 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRK-EDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKGSSA----VGLT 503 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcc-cccccccccccceEEEecCCCcCHHHHHHHHHHhCCccee-ecCCccch----hcce
Confidence 3556666666554322221111 122222 233357999999999999999999987643322 221 111 1111
Q ss_pred hh-----HHHHHHHHHH---hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHH------hcCC--CCCCCeEE
Q 014798 309 AS-----RVRDLFKKAK---ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE------MDGF--EGNTGIIV 372 (418)
Q Consensus 309 ~~-----~vr~lF~~A~---~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~e------mdg~--~~~~~ViV 372 (418)
+- .-+++..+.- -..-.|.+|||+|++. +....+|.+.+++ -.|. .-+.+.-|
T Consensus 504 ayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~-----------dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SV 572 (804)
T KOG0478|consen 504 AYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMS-----------DSTRSVLHEVMEQQTLSIAKAGIIASLNARCSV 572 (804)
T ss_pred eeEEecCccceeeeecCcEEEcCCceEEchhhhhhh-----------HHHHHHHHHHHHHhhhhHhhcceeeecccccee
Confidence 10 1111211110 1123589999999993 2223344444443 1111 12445779
Q ss_pred EEEeCCCC-------------CcchhhhCCCccceEEEecCch-HH
Q 014798 373 IAATNRAD-------------ILDSALLRPGRFDRQVKHVSLS-LM 404 (418)
Q Consensus 373 IatTN~~~-------------~LD~ALlRpGRFdr~I~v~~lP-~R 404 (418)
||++|..+ .|+|.|++ |||..+-+.+.| +|
T Consensus 573 LAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 573 LAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDER 616 (804)
T ss_pred eeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchh
Confidence 99999432 58999999 999988776888 55
No 248
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.08 E-value=1.1e-05 Score=68.13 Aligned_cols=23 Identities=43% Similarity=0.764 Sum_probs=20.5
Q ss_pred ceEECCCCChHHHHHHHHHHhcC
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAG 289 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~ 289 (418)
|+|+||||+|||++|+.+|.++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999987663
No 249
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.07 E-value=1.8e-05 Score=83.73 Aligned_cols=71 Identities=23% Similarity=0.365 Sum_probs=50.1
Q ss_pred cccccCCCCcccccccCchHHHHHHHHHHHH--hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeee
Q 014798 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF--LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (418)
Q Consensus 219 ~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~--l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs 296 (418)
.+|+++..+-+.++++=...-..++++++.. ...+. +|. +-+||+||+|||||+.++-+|+++|+.++.-+
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~----l~~---~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPK----LGS---RILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccC----CCc---eEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 5688888888999988655555555554442 11221 121 24889999999999999999999988766543
No 250
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.07 E-value=1.8e-05 Score=81.40 Aligned_cols=74 Identities=28% Similarity=0.481 Sum_probs=53.6
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHh------hhc--------chhHHHHHHHHHHhCCCeEE
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF------VGV--------GASRVRDLFKKAKENAPCIV 327 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~------vg~--------~~~~vr~lF~~A~~~aP~II 327 (418)
.-++|+|+||+|||+|+..+|... +.+++++++.+-.+.. .+. .+..+.++++......|.+|
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lV 162 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDLV 162 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEE
Confidence 448999999999999999998754 4678888776533321 111 22345667777777889999
Q ss_pred EEcCCcccccc
Q 014798 328 FVDEIDAVGRQ 338 (418)
Q Consensus 328 fIDEIDal~~~ 338 (418)
+||+|..+...
T Consensus 163 VIDSIq~l~~~ 173 (372)
T cd01121 163 IIDSIQTVYSS 173 (372)
T ss_pred EEcchHHhhcc
Confidence 99999998643
No 251
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.06 E-value=1.5e-05 Score=75.49 Aligned_cols=115 Identities=21% Similarity=0.270 Sum_probs=63.4
Q ss_pred CccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhH----HHHhhhc-------------------chhHHHH
Q 014798 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF----VEMFVGV-------------------GASRVRD 314 (418)
Q Consensus 261 ~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sef----ve~~vg~-------------------~~~~vr~ 314 (418)
.+...-++++||||+|||++|..+|.+. +.+.+++++..+ ....... -...++.
T Consensus 20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 99 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRK 99 (225)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHH
Confidence 3333458999999999999999998644 778888887722 1111110 0011122
Q ss_pred HHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 315 LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 315 lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
+..... ..+++|+||.+.++.+....+ .....+..+.+.+++..+..+....++.++++..
T Consensus 100 ~~~~~~-~~~~lvVIDsi~al~~~~~~~-~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tnq 160 (225)
T PRK09361 100 AEKLAK-ENVGLIVLDSATSLYRLELED-EEDNSKLNRELGRQLTHLLKLARKHDLAVVITNQ 160 (225)
T ss_pred HHHHHH-hcccEEEEeCcHHHhHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence 222121 578999999999986532111 1122233344444444343333344566776654
No 252
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.04 E-value=4.1e-05 Score=76.34 Aligned_cols=146 Identities=20% Similarity=0.287 Sum_probs=83.3
Q ss_pred cccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc---------CCCeeeeehh----
Q 014798 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGS---- 298 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~vs~s---- 298 (418)
.-+|...+++.+..+-+.+..|.. .+ ..++||+|++|.|||++++..+... ..|++++.+.
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~-----~R-mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~ 108 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKR-----HR-MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPD 108 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcc-----cC-CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCC
Confidence 346778888888877777888763 22 3469999999999999999998644 3577777543
Q ss_pred --hHHHHh---hhc---c----hhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC
Q 014798 299 --EFVEMF---VGV---G----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG 366 (418)
Q Consensus 299 --efve~~---vg~---~----~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~ 366 (418)
.|.... .|. . .+.-.......+...+.+|+|||++.+... ...+....+|.|-.... +-
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG-------s~~~qr~~Ln~LK~L~N--eL 179 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG-------SYRKQREFLNALKFLGN--EL 179 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc-------cHHHHHHHHHHHHHHhh--cc
Confidence 122111 111 1 111122233344566779999999998632 22333334443333222 11
Q ss_pred CCCeEEEEEeCCCC--CcchhhhCCCccce
Q 014798 367 NTGIIVIAATNRAD--ILDSALLRPGRFDR 394 (418)
Q Consensus 367 ~~~ViVIatTN~~~--~LD~ALlRpGRFdr 394 (418)
+-.++.++|-.-.. .-|+.+.+ ||+.
T Consensus 180 ~ipiV~vGt~~A~~al~~D~QLa~--RF~~ 207 (302)
T PF05621_consen 180 QIPIVGVGTREAYRALRTDPQLAS--RFEP 207 (302)
T ss_pred CCCeEEeccHHHHHHhccCHHHHh--ccCC
Confidence 22244444332111 34677777 8864
No 253
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.03 E-value=1.1e-05 Score=88.30 Aligned_cols=52 Identities=31% Similarity=0.454 Sum_probs=42.4
Q ss_pred CCCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcC
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG 289 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~ 289 (418)
..++..|++|.|++++++.+...+.. . +.++|+||||||||++|+++|..+.
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~---~-----------~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQ---R-----------RHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHh---C-----------CeEEEECCCCCcHHHHHHHHHHHcC
Confidence 34567999999999999987775552 1 2699999999999999999998653
No 254
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=2.8e-05 Score=77.42 Aligned_cols=118 Identities=14% Similarity=0.145 Sum_probs=79.4
Q ss_pred ccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH-------h--hh----cchhHHHHHHHHHHh----CCC
Q 014798 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-------F--VG----VGASRVRDLFKKAKE----NAP 324 (418)
Q Consensus 262 ~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~-------~--vg----~~~~~vr~lF~~A~~----~aP 324 (418)
+.|..+||+||+|+||+.+|.++|..+-+.--.-.|..+... . .+ .+...+|++.+.+.. ...
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 345589999999999999999999876331000011111000 0 01 134456777666543 234
Q ss_pred eEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEe
Q 014798 325 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 325 ~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v 398 (418)
.|++||++|.+. ....|.||+-++. +.+++++|..|+.++.|-|.+++ |+. .+.+
T Consensus 97 kv~ii~~ad~mt--------------~~AaNaLLK~LEE--Pp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~ 151 (290)
T PRK05917 97 KIYIIHEADRMT--------------LDAISAFLKVLED--PPQHGVIILTSAKPQRLPPTIRS--RSL-SIHI 151 (290)
T ss_pred eEEEEechhhcC--------------HHHHHHHHHHhhc--CCCCeEEEEEeCChhhCcHHHHh--cce-EEEc
Confidence 699999999994 4567888888884 55678899999999999999998 663 3445
No 255
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.01 E-value=2.4e-05 Score=77.23 Aligned_cols=112 Identities=25% Similarity=0.423 Sum_probs=68.4
Q ss_pred CCceEECCCCChHHHHHHHHHHhcC----------CCeeeee-hhhHHHHhhh-------------cchhHHHHHHHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAG----------VPFFSIS-GSEFVEMFVG-------------VGASRVRDLFKKAK 320 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~----------~pfi~vs-~sefve~~vg-------------~~~~~vr~lF~~A~ 320 (418)
++++|.||+|+|||+|.+++++... .++..++ ..++...+.+ .+......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 4799999999999999999998763 2232222 2233222111 01122334666667
Q ss_pred hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchh--------hhCCCcc
Q 014798 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSA--------LLRPGRF 392 (418)
Q Consensus 321 ~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~A--------LlRpGRF 392 (418)
...|.+|++||+.. ...+..++..+. .+..+|++|+..+ +..+ |+..+-|
T Consensus 192 ~~~P~villDE~~~----------------~e~~~~l~~~~~-----~G~~vI~ttH~~~-~~~~~~r~~~~~l~~~~~~ 249 (270)
T TIGR02858 192 SMSPDVIVVDEIGR----------------EEDVEALLEALH-----AGVSIIATAHGRD-VEDLYKRPVFKELIENEAF 249 (270)
T ss_pred hCCCCEEEEeCCCc----------------HHHHHHHHHHHh-----CCCEEEEEechhH-HHHHHhChHHHHHHhcCce
Confidence 78999999999621 223455555553 3567899998643 3233 2335568
Q ss_pred ceEEEe
Q 014798 393 DRQVKH 398 (418)
Q Consensus 393 dr~I~v 398 (418)
++.+.+
T Consensus 250 ~r~i~L 255 (270)
T TIGR02858 250 ERYVVL 255 (270)
T ss_pred EEEEEE
Confidence 887766
No 256
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.00 E-value=1.4e-05 Score=87.22 Aligned_cols=86 Identities=31% Similarity=0.398 Sum_probs=66.4
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC----eeee-eh---
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----FFSI-SG--- 297 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p----fi~v-s~--- 297 (418)
+..-+++++|++++++.++..+.. . ++++|+||||||||++++++|+.++.. +.++ +.
T Consensus 13 ~~~~~~~viG~~~a~~~l~~a~~~---~-----------~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~ 78 (608)
T TIGR00764 13 PERLIDQVIGQEEAVEIIKKAAKQ---K-----------RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDP 78 (608)
T ss_pred chhhHhhccCHHHHHHHHHHHHHc---C-----------CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCC
Confidence 457899999999999887776651 1 279999999999999999999988654 2222 22
Q ss_pred --hhHHHHhhhcchhHHHHHHHHHHhCCCe
Q 014798 298 --SEFVEMFVGVGASRVRDLFKKAKENAPC 325 (418)
Q Consensus 298 --sefve~~vg~~~~~vr~lF~~A~~~aP~ 325 (418)
.-+...+.+.+.+.++..|..|++.+|+
T Consensus 79 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 108 (608)
T TIGR00764 79 NMPRIVEVPAGEGREIVEDYKKKAFKQPSS 108 (608)
T ss_pred chHHHHHHHHhhchHHHHHHHHHhhcccch
Confidence 2234556788999999999999988766
No 257
>PHA00729 NTP-binding motif containing protein
Probab=98.00 E-value=1.4e-05 Score=76.91 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=22.4
Q ss_pred CceEECCCCChHHHHHHHHHHhcC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~ 289 (418)
+++|+|+||||||+||.++|.+++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999999875
No 258
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=98.00 E-value=1.8e-05 Score=81.07 Aligned_cols=109 Identities=20% Similarity=0.293 Sum_probs=62.9
Q ss_pred CccCCCceEECCCCChHHHHHHHHHHhcCC--CeeeeehhhHHHH-------hhhc-ch-----------hHHHHHHHHH
Q 014798 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFVEM-------FVGV-GA-----------SRVRDLFKKA 319 (418)
Q Consensus 261 ~~~p~gVLL~GPPGTGKT~LArAIA~el~~--pfi~vs~sefve~-------~vg~-~~-----------~~vr~lF~~A 319 (418)
-.+|+|++|||..|||||+|.-..-.++.- .=-.|...+|+.. +..+ ++ .-+.-+-+..
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eI 190 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPPIWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEI 190 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCchhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHH
Confidence 346899999999999999999988755421 0012223333321 1100 10 0011111111
Q ss_pred HhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC-CCCcchh
Q 014798 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADILDSA 385 (418)
Q Consensus 320 ~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~-~~~LD~A 385 (418)
...-+++++||+... +-...-.|+.|...+- +.||+++||+|| |++|...
T Consensus 191 -a~ea~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYkn 241 (467)
T KOG2383|consen 191 -AEEAILLCFDEFQVT-----------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKN 241 (467)
T ss_pred -hhhceeeeechhhhh-----------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhc
Confidence 223479999998543 2233457777877764 458999999996 5555443
No 259
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.97 E-value=8.9e-07 Score=89.58 Aligned_cols=145 Identities=26% Similarity=0.252 Sum_probs=71.1
Q ss_pred cccCchHHHHHHHH-HHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH----------
Q 014798 232 DVAGVDEAKQDFME-VVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF---------- 300 (418)
Q Consensus 232 dV~G~de~k~eL~e-~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef---------- 300 (418)
+|.|.+.+|..+.= ++........ .....+..-++||+|.||||||.|.+.+++-+...+ ++++..-
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~-~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDP-DGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVS 102 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCC-T-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEEC
T ss_pred cCcCcHHHHHHHHHHHHhccccccc-cccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceec
Confidence 47788887775532 1111111000 001123345799999999999999998875443222 2322221
Q ss_pred ----HHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC-----------
Q 014798 301 ----VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE----------- 365 (418)
Q Consensus 301 ----ve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~----------- 365 (418)
...|+-+. ..+-.|. ..|++|||+|.+.. .....|++.|+...
T Consensus 103 ~d~~~~~~~lea-----Galvlad---~GiccIDe~dk~~~--------------~~~~~l~eaMEqq~isi~kagi~~~ 160 (331)
T PF00493_consen 103 RDPVTGEWVLEA-----GALVLAD---GGICCIDEFDKMKE--------------DDRDALHEAMEQQTISIAKAGIVTT 160 (331)
T ss_dssp CCGGTSSECEEE------HHHHCT---TSEEEECTTTT--C--------------HHHHHHHHHHHCSCEEECTSSSEEE
T ss_pred cccccceeEEeC-----Cchhccc---Cceeeecccccccc--------------hHHHHHHHHHHcCeeccchhhhccc
Confidence 00111111 1222232 35999999999842 13445566665421
Q ss_pred CCCCeEEEEEeCCCC-------------CcchhhhCCCccceEEEecCch
Q 014798 366 GNTGIIVIAATNRAD-------------ILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 366 ~~~~ViVIatTN~~~-------------~LD~ALlRpGRFdr~I~v~~lP 402 (418)
.+.+.-|+|++|... .+++.|++ |||-.+.+.+.|
T Consensus 161 l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~ 208 (331)
T PF00493_consen 161 LNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKP 208 (331)
T ss_dssp EE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TT
T ss_pred ccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEecccc
Confidence 134578999999655 47888999 999987764555
No 260
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.96 E-value=4.4e-05 Score=73.40 Aligned_cols=106 Identities=14% Similarity=0.234 Sum_probs=59.0
Q ss_pred CCCceEECCCCChHHHHHHHHHH-h--cCCCeeeeehhhHH----HHhh--hc-------------------------ch
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAG-E--AGVPFFSISGSEFV----EMFV--GV-------------------------GA 309 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~-e--l~~pfi~vs~sefv----e~~v--g~-------------------------~~ 309 (418)
..-+++.||||||||+++..++. . .+.+.++++..+-. +... |. ..
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 103 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEKR 103 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHHH
Confidence 34589999999999999755543 3 26677777654321 1110 00 01
Q ss_pred hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014798 310 SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (418)
Q Consensus 310 ~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~ 379 (418)
..+..+........|.+++|||+-.+... ..+....+.+.+++..+.. .+..++.+++..
T Consensus 104 ~~l~~il~~~~~~~~~~lVIDe~t~~l~~------~~d~~~~~~l~~~l~~l~~----~g~tvi~t~~~~ 163 (230)
T PRK08533 104 KFLKKLMNTRRFYEKDVIIIDSLSSLISN------DASEVAVNDLMAFFKRISS----LNKVIILTANPK 163 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccHHhcC------CcchHHHHHHHHHHHHHHh----CCCEEEEEeccc
Confidence 22334444444557899999999886421 1122222344455555432 134666677644
No 261
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.96 E-value=1.7e-05 Score=76.05 Aligned_cols=72 Identities=24% Similarity=0.271 Sum_probs=40.4
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH-H--H---hh----hcchhHHHHHHHHHH--hCCCeEEEEcC
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV-E--M---FV----GVGASRVRDLFKKAK--ENAPCIVFVDE 331 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv-e--~---~v----g~~~~~vr~lF~~A~--~~aP~IIfIDE 331 (418)
|.-+|+||+||+|||++|+.+++. ..++..+++.-. . . .+ ...-..+.+.+..+. .+.+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 556999999999999999999742 112222221100 0 0 00 001112233333222 24568999999
Q ss_pred Cccccc
Q 014798 332 IDAVGR 337 (418)
Q Consensus 332 IDal~~ 337 (418)
|+.+.+
T Consensus 90 I~~l~~ 95 (220)
T TIGR01618 90 ISALQN 95 (220)
T ss_pred HHHHHH
Confidence 999855
No 262
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.95 E-value=2.8e-06 Score=91.06 Aligned_cols=112 Identities=35% Similarity=0.478 Sum_probs=73.4
Q ss_pred CceEECCCCChHHHHHHHHHH--hcCCCeeeeehhhHHHH-----hhhcchh--------HHHHHHHHHHhCCCeEEEEc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAG--EAGVPFFSISGSEFVEM-----FVGVGAS--------RVRDLFKKAKENAPCIVFVD 330 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~--el~~pfi~vs~sefve~-----~vg~~~~--------~vr~lF~~A~~~aP~IIfID 330 (418)
.+++.|.|||||-.|||++-. +...||+.++|..+-+. ++|..+. --+..+++|.. ..+|+|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---GtlFld 414 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTLFLD 414 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---CccHHH
Confidence 599999999999999999944 35779999999876543 4443222 22333444433 389999
Q ss_pred CCcccccccCCCCCCCChHHHHHHHHHHHH-----hcCCCCCCCeEEEEEeCCCCCcchhhhCCCccce
Q 014798 331 EIDAVGRQRGTGIGGGNDEREQTLNQLLTE-----MDGFEGNTGIIVIAATNRADILDSALLRPGRFDR 394 (418)
Q Consensus 331 EIDal~~~r~~~~~~~~~e~~~~L~~LL~e-----mdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr 394 (418)
||..+.- ..+..|.+.|.+ +.+-...-+|.||+||++.-. .|.+.|||-+
T Consensus 415 eIgd~p~-----------~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~---~lv~~g~fre 469 (606)
T COG3284 415 EIGDMPL-----------ALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLA---QLVEQGRFRE 469 (606)
T ss_pred HhhhchH-----------HHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHH---HHHHcCCchH
Confidence 9988742 223344444444 233232335899999997543 6777888844
No 263
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.93 E-value=2.3e-05 Score=71.04 Aligned_cols=103 Identities=20% Similarity=0.228 Sum_probs=65.5
Q ss_pred CceEECCCCChHHHHHHHHHHhcCC--Ceeeeehhh--------HHHHhhh-----cchhHHHHHHHHHHhCCCeEEEEc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSE--------FVEMFVG-----VGASRVRDLFKKAKENAPCIVFVD 330 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~--pfi~vs~se--------fve~~vg-----~~~~~vr~lF~~A~~~aP~IIfID 330 (418)
.+.|.||+|+|||+|++.+++.... --+.+++.+ .....++ .+..+.|-.+..|....|.++++|
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~illlD 107 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLILD 107 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 4889999999999999999986521 111222211 1111111 123455667777888899999999
Q ss_pred CCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 331 EIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 331 EIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
|-.. +-+.+..+.+.+++.++.. .+..+|.+|+..+.+
T Consensus 108 EP~~----------~LD~~~~~~l~~~l~~~~~----~~~tiii~sh~~~~~ 145 (163)
T cd03216 108 EPTA----------ALTPAEVERLFKVIRRLRA----QGVAVIFISHRLDEV 145 (163)
T ss_pred CCCc----------CCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHHH
Confidence 9644 2355666777777777631 245677778765543
No 264
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.91 E-value=2.2e-05 Score=85.91 Aligned_cols=130 Identities=29% Similarity=0.296 Sum_probs=81.3
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeee-eehhhHHHHhhhcchhHHHHHH--H---HH---HhCCCeEEEEcCCccc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFS-ISGSEFVEMFVGVGASRVRDLF--K---KA---KENAPCIVFVDEIDAV 335 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~-vs~sefve~~vg~~~~~vr~lF--~---~A---~~~aP~IIfIDEIDal 335 (418)
-++||+|.||||||.|.+.+++-+-..++. -.++.- +|-++..+|+-. + .| .-..+.|++|||+|.+
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM 395 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC
Confidence 469999999999999999999877544332 222221 233333333333 1 00 0123569999999998
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHhcCC-----------CCCCCeEEEEEeCCCC-------------CcchhhhCCCc
Q 014798 336 GRQRGTGIGGGNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRAD-------------ILDSALLRPGR 391 (418)
Q Consensus 336 ~~~r~~~~~~~~~e~~~~L~~LL~emdg~-----------~~~~~ViVIatTN~~~-------------~LD~ALlRpGR 391 (418)
-. . ..+.+.+.|+.. ..+...-|+||+|... .|+++|++ |
T Consensus 396 ~~-----------~---dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--R 459 (682)
T COG1241 396 NE-----------E---DRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--R 459 (682)
T ss_pred Ch-----------H---HHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--h
Confidence 32 1 233344444332 1134467889999554 57889999 9
Q ss_pred cceEEEecCch-------HHHHHHHHhhcc
Q 014798 392 FDRQVKHVSLS-------LMLWFLKTHSQY 414 (418)
Q Consensus 392 Fdr~I~v~~lP-------~R~~IL~~~l~~ 414 (418)
||..+.+.+-| --..|+..|..+
T Consensus 460 FDLifvl~D~~d~~~D~~ia~hil~~h~~~ 489 (682)
T COG1241 460 FDLIFVLKDDPDEEKDEEIAEHILDKHRGE 489 (682)
T ss_pred CCeeEEecCCCCccchHHHHHHHHHHHhcc
Confidence 99988887777 235677777543
No 265
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.91 E-value=4.6e-05 Score=76.91 Aligned_cols=116 Identities=22% Similarity=0.263 Sum_probs=66.2
Q ss_pred ccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHH-h---hhc------------chhHHHHHHHHHHhC
Q 014798 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-F---VGV------------GASRVRDLFKKAKEN 322 (418)
Q Consensus 262 ~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~-~---vg~------------~~~~vr~lF~~A~~~ 322 (418)
+..+-++|+||||||||+||-.++.++ +.++++++..+..+. + .|. .+..+..+....+..
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~ 132 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSG 132 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcc
Confidence 333458899999999999988765433 677888876543321 0 010 111222222223456
Q ss_pred CCeEEEEcCCcccccccC-CCCCCCC--hHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 323 APCIVFVDEIDAVGRQRG-TGIGGGN--DEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 323 aP~IIfIDEIDal~~~r~-~~~~~~~--~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
.+++|+||-+.++.+... ++..+.. ....+.+.+.|..+...-...++.+|++..
T Consensus 133 ~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 133 AVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred CCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 789999999999875321 1111111 122344455666555554556677777754
No 266
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.91 E-value=6.7e-05 Score=70.64 Aligned_cols=112 Identities=21% Similarity=0.181 Sum_probs=60.4
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhh----HHHHhhhc------------c-------hhHHHHHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE----FVEMFVGV------------G-------ASRVRDLFKK 318 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~se----fve~~vg~------------~-------~~~vr~lF~~ 318 (418)
.-++++|+||||||+++..+|.+. +.+.++++... ......+. . ...+..+...
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQETETF 99 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEEEEeCCCHHHHHHHHHHHHHH
Confidence 348999999999999999998654 56777776542 11111110 0 0111222222
Q ss_pred HHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014798 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (418)
Q Consensus 319 A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~ 378 (418)
.. ..+++|+||-+.++.+...... .......+.+.+++..+..+....++.+|.+...
T Consensus 100 ~~-~~~~lvvIDsi~~l~~~~~~~~-~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~t~q~ 157 (218)
T cd01394 100 AD-EKVDLVVVDSATALYRLELGDD-DTTIKNYRELAKQLTFLLWLARKHDVAVVITNQV 157 (218)
T ss_pred Hh-cCCcEEEEechHHhhhHHhcCc-cchHHHHHHHHHHHHHHHHHHHHhCCEEEEecCC
Confidence 22 3478999999998854221110 0112222334444433333333456777777654
No 267
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.90 E-value=2.1e-05 Score=77.89 Aligned_cols=67 Identities=39% Similarity=0.575 Sum_probs=55.2
Q ss_pred cccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc--CCCeeeeehhhHHHH
Q 014798 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA--GVPFFSISGSEFVEM 303 (418)
Q Consensus 230 f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el--~~pfi~vs~sefve~ 303 (418)
-+.++|+.++.+..--+++.++.... ..+++||.||||||||.||-++++|+ ++||..+.+|+..+.
T Consensus 37 ~~g~vGQ~~AReAagiivdlik~Kkm-------aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~ 105 (456)
T KOG1942|consen 37 AAGFVGQENAREAAGIIVDLIKSKKM-------AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSN 105 (456)
T ss_pred ccccccchhhhhhhhHHHHHHHhhhc-------cCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhh
Confidence 35688999999888777887766542 23589999999999999999999999 689999999987654
No 268
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.90 E-value=4.7e-05 Score=71.58 Aligned_cols=105 Identities=24% Similarity=0.385 Sum_probs=60.9
Q ss_pred CCceEECCCCChHHHHHHHHHHhc-----CCCe-------------eeeehhhHHHH---hhhcchhHHHHHHHHHHhCC
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPF-------------FSISGSEFVEM---FVGVGASRVRDLFKKAKENA 323 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el-----~~pf-------------i~vs~sefve~---~vg~~~~~vr~lF~~A~~~a 323 (418)
+-++|+||+|+|||+|+|.+++.. |.++ ..++..+-+.. .......+++++++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 368999999999999999998633 3321 11111111100 00112245677777765558
Q ss_pred CeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 324 P~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
|.++++||.-+-. +..........++..+.. .+..+|.+|+..+.+
T Consensus 106 p~llllDEp~~gl---------D~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~ 151 (199)
T cd03283 106 PVLFLLDEIFKGT---------NSRERQAASAAVLKFLKN----KNTIGIISTHDLELA 151 (199)
T ss_pred CeEEEEecccCCC---------CHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHH
Confidence 8999999973311 112223334556666542 246788888876644
No 269
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.88 E-value=4e-05 Score=68.64 Aligned_cols=38 Identities=24% Similarity=0.505 Sum_probs=31.5
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~ 303 (418)
+..++|+|+||||||++|+++|++++.+++.. .++.+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~--d~~~~~ 41 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT--DHLIEA 41 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHH
Confidence 45799999999999999999999999888754 444443
No 270
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.88 E-value=1.8e-05 Score=85.74 Aligned_cols=118 Identities=15% Similarity=0.120 Sum_probs=83.0
Q ss_pred CCceEECCCCChHHHHHHHHHHhcC--CCeeeeehhhHHHHhhhcch---------h-HHHHHHHHHHhCCCeEEEEcCC
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEMFVGVGA---------S-RVRDLFKKAKENAPCIVFVDEI 332 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~--~pfi~vs~sefve~~vg~~~---------~-~vr~lF~~A~~~aP~IIfIDEI 332 (418)
.||+|.|++||+||+++++++.-+. .||..+..+--.+..+|.+. . .-..++..|. ..|+|+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 4899999999999999999999874 58888766655556666431 0 0112232222 259999999
Q ss_pred cccccccCCCCCCCChHHHHHHHHHHHHhcCC-----------CCCCCeEEEEEeCCC---CCcchhhhCCCccceEEEe
Q 014798 333 DAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRA---DILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 333 Dal~~~r~~~~~~~~~e~~~~L~~LL~emdg~-----------~~~~~ViVIatTN~~---~~LD~ALlRpGRFdr~I~v 398 (418)
..+. ..+++.|++-|+.- .....+++|++-|.. ..|.++++. ||+.++.+
T Consensus 103 n~~~--------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 103 ERLE--------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred ccCC--------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 7774 45788888888642 112457888874432 348899999 99999999
Q ss_pred cCch
Q 014798 399 VSLS 402 (418)
Q Consensus 399 ~~lP 402 (418)
+.|
T Consensus 167 -~~~ 169 (584)
T PRK13406 167 -DGL 169 (584)
T ss_pred -CCC
Confidence 766
No 271
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.00026 Score=70.87 Aligned_cols=118 Identities=12% Similarity=0.098 Sum_probs=79.0
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCC-----------C--eeeee--hhhHHHHhhhcchhHHHHHHHHHHh-----CC
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGV-----------P--FFSIS--GSEFVEMFVGVGASRVRDLFKKAKE-----NA 323 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~-----------p--fi~vs--~sefve~~vg~~~~~vr~lF~~A~~-----~a 323 (418)
+..+||+|+.|.||+.+|+++|..+-+ | +..++ +. ..+...++++.+.... ..
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~-------~i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDK-------DLSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCC-------cCCHHHHHHHHHHhccCCcccCC
Confidence 446889999999999999999887611 2 22222 11 1123456666666532 24
Q ss_pred CeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCchH
Q 014798 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLSL 403 (418)
Q Consensus 324 P~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP~ 403 (418)
..|++||++|.+. ....|.||..++. +.+.+++|..|+.++.|-+.+++ |. ..+.+ ..|.
T Consensus 91 ~KvvII~~~e~m~--------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc-~~~~f-~~l~ 150 (299)
T PRK07132 91 KKILIIKNIEKTS--------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RC-QVFNV-KEPD 150 (299)
T ss_pred ceEEEEecccccC--------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--Ce-EEEEC-CCCC
Confidence 5799999998873 3467788888885 44567788788788899999887 55 34666 4443
Q ss_pred HHHHH
Q 014798 404 MLWFL 408 (418)
Q Consensus 404 R~~IL 408 (418)
..++.
T Consensus 151 ~~~l~ 155 (299)
T PRK07132 151 QQKIL 155 (299)
T ss_pred HHHHH
Confidence 33443
No 272
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.84 E-value=8.4e-05 Score=67.91 Aligned_cols=24 Identities=38% Similarity=0.605 Sum_probs=21.7
Q ss_pred CCceEECCCCChHHHHHHHHHHhc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el 288 (418)
.-++++|+||+|||+++.-+|..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 358999999999999999999866
No 273
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.84 E-value=6.2e-05 Score=71.89 Aligned_cols=40 Identities=28% Similarity=0.507 Sum_probs=30.5
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHh---cCCCeeeeehhh
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSE 299 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~vs~se 299 (418)
|.+.+..++++|+||||||+++..++.+ .+.+.++++..+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 4444456899999999999999999654 367777777543
No 274
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.83 E-value=5.2e-05 Score=74.06 Aligned_cols=60 Identities=23% Similarity=0.373 Sum_probs=44.7
Q ss_pred chhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 308 GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 308 ~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
|.+.-|-+++.|....|.++++||-- .+-+...+..+.+||.++.. ++..|++.|+..+.
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~----------~gvD~~~~~~i~~lL~~l~~----eg~tIl~vtHDL~~ 201 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPF----------TGVDVAGQKEIYDLLKELRQ----EGKTVLMVTHDLGL 201 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCc----------ccCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCcHH
Confidence 44556677888888899999999942 34566778888888888852 36788888886553
No 275
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.82 E-value=0.00015 Score=70.46 Aligned_cols=127 Identities=23% Similarity=0.372 Sum_probs=64.5
Q ss_pred CCceEECCCCChHHHHHHHHHHh--cCCCe---eeeehh------hHHHHh---hhc---------chhHHHHHHHHHHh
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGE--AGVPF---FSISGS------EFVEMF---VGV---------GASRVRDLFKKAKE 321 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~e--l~~pf---i~vs~s------efve~~---vg~---------~~~~vr~lF~~A~~ 321 (418)
+-|.|+|++|+|||+||+.++.. ....| +.++.+ ++.... .+. ......+.+.....
T Consensus 20 ~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 99 (287)
T PF00931_consen 20 RVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLK 99 (287)
T ss_dssp EEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHC
T ss_pred EEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhc
Confidence 35899999999999999999977 33322 223222 121111 111 12223344444445
Q ss_pred CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCc
Q 014798 322 NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSL 401 (418)
Q Consensus 322 ~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~l 401 (418)
..+++|++|+++... .+.++...+..+ ..+..||.||....... ..- .-+..+.+.++
T Consensus 100 ~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~~~kilvTTR~~~v~~-~~~---~~~~~~~l~~L 157 (287)
T PF00931_consen 100 DKRCLLVLDDVWDEE----------------DLEELREPLPSF--SSGSKILVTTRDRSVAG-SLG---GTDKVIELEPL 157 (287)
T ss_dssp CTSEEEEEEEE-SHH----------------HH-------HCH--HSS-EEEEEESCGGGGT-THH---SCEEEEECSS-
T ss_pred cccceeeeeeecccc----------------cccccccccccc--ccccccccccccccccc-ccc---ccccccccccc
Confidence 569999999986642 233333322221 23456777887543221 111 11456777444
Q ss_pred h--HHHHHHHHhhc
Q 014798 402 S--LMLWFLKTHSQ 413 (418)
Q Consensus 402 P--~R~~IL~~~l~ 413 (418)
. +-.++|+.++.
T Consensus 158 ~~~ea~~L~~~~~~ 171 (287)
T PF00931_consen 158 SEEEALELFKKRAG 171 (287)
T ss_dssp -HHHHHHHHHHHHT
T ss_pred cccccccccccccc
Confidence 4 66677776654
No 276
>PRK08118 topology modulation protein; Reviewed
Probab=97.81 E-value=3e-05 Score=70.86 Aligned_cols=33 Identities=24% Similarity=0.600 Sum_probs=29.7
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~s 298 (418)
-++++||||+||||+|+.++.+++.|++.++.-
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 489999999999999999999999998877643
No 277
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.81 E-value=0.00011 Score=77.61 Aligned_cols=73 Identities=22% Similarity=0.381 Sum_probs=52.5
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHhh------hc--------chhHHHHHHHHHHhCCCeEE
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV--------GASRVRDLFKKAKENAPCIV 327 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~v------g~--------~~~~vr~lF~~A~~~aP~II 327 (418)
.-++|.|+||+|||+|+..+|... +.+++++++.+-.+... +. .+..+.++.+.+.+..|.+|
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~~v 174 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQAC 174 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCcEE
Confidence 348999999999999999997654 46788888765433211 11 12345566666777789999
Q ss_pred EEcCCccccc
Q 014798 328 FVDEIDAVGR 337 (418)
Q Consensus 328 fIDEIDal~~ 337 (418)
+||.|..+..
T Consensus 175 VIDSIq~l~~ 184 (454)
T TIGR00416 175 VIDSIQTLYS 184 (454)
T ss_pred EEecchhhcc
Confidence 9999998754
No 278
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.81 E-value=3.8e-05 Score=82.42 Aligned_cols=162 Identities=22% Similarity=0.256 Sum_probs=89.8
Q ss_pred cccccCchHHHHHHHHHHHHhcCchhh--hhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhhc
Q 014798 230 FDDVAGVDEAKQDFMEVVEFLKKPERF--TAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGV 307 (418)
Q Consensus 230 f~dV~G~de~k~eL~e~v~~l~~p~~~--~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg~ 307 (418)
|-.|.|.+.+|.-+.-.+-- .-.++ ....++.--+|+++|.|||||+-+.+++++-+-..+|. ++..- .-.|-
T Consensus 344 ~PsIyGhe~VK~GilL~LfG--Gv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGkaS--SaAGL 418 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFG--GVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKAS--SAAGL 418 (764)
T ss_pred CccccchHHHHhhHHHHHhC--CccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe-cCccc--ccccc
Confidence 45677888888866543322 11111 22333334579999999999999999998866443332 22110 01122
Q ss_pred chhHHHHH--HH---HH---HhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCC-----------CCCC
Q 014798 308 GASRVRDL--FK---KA---KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF-----------EGNT 368 (418)
Q Consensus 308 ~~~~vr~l--F~---~A---~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~-----------~~~~ 368 (418)
++..+++- ++ +| .-..-.|.+|||+|++.-+ .+.. +.+.|+.. .-+.
T Consensus 419 TaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~-----------dqvA---ihEAMEQQtISIaKAGv~aTLnA 484 (764)
T KOG0480|consen 419 TAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK-----------DQVA---IHEAMEQQTISIAKAGVVATLNA 484 (764)
T ss_pred eEEEEecCCCCceeeecCcEEEccCceEEechhcccChH-----------hHHH---HHHHHHhheehheecceEEeecc
Confidence 22222110 00 01 0112359999999999421 1222 33334321 1134
Q ss_pred CeEEEEEeCCCC-------------CcchhhhCCCccceEEEecCch-------HHHHHHHHhh
Q 014798 369 GIIVIAATNRAD-------------ILDSALLRPGRFDRQVKHVSLS-------LMLWFLKTHS 412 (418)
Q Consensus 369 ~ViVIatTN~~~-------------~LD~ALlRpGRFdr~I~v~~lP-------~R~~IL~~~l 412 (418)
+.-||||+|+.. .+++++++ |||..+.+.+-| --+.|+..|.
T Consensus 485 RtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~ 546 (764)
T KOG0480|consen 485 RTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHR 546 (764)
T ss_pred hhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhc
Confidence 467889998543 46888998 999877665666 2345555553
No 279
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=7.8e-05 Score=73.09 Aligned_cols=117 Identities=14% Similarity=0.104 Sum_probs=80.0
Q ss_pred cCCCceEECCCCChHHHHHHHHHHhcCCC-----ee-eeehhhHHHH------hh-----hcchhHHHHHHHHHHh----
Q 014798 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----FF-SISGSEFVEM------FV-----GVGASRVRDLFKKAKE---- 321 (418)
Q Consensus 263 ~p~gVLL~GPPGTGKT~LArAIA~el~~p-----fi-~vs~sefve~------~v-----g~~~~~vr~lF~~A~~---- 321 (418)
.|..+|++||.|+||..+|.++|..+-+. .= .-+|..+... ++ ..+...+|++.+....
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 46689999999999999999999865221 10 0112211110 00 1234566666655432
Q ss_pred -CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEe
Q 014798 322 -NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 322 -~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v 398 (418)
....|++||++|.+. ....|.||.-++. +..++++|..|+.++.+-|.+++ |..+ +.+
T Consensus 86 ~~~~KV~II~~ae~m~--------------~~AaNaLLK~LEE--Pp~~t~fiLit~~~~~lLpTI~S--RCq~-~~~ 144 (261)
T PRK05818 86 SNGKKIYIIYGIEKLN--------------KQSANSLLKLIEE--PPKNTYGIFTTRNENNILNTILS--RCVQ-YVV 144 (261)
T ss_pred cCCCEEEEeccHhhhC--------------HHHHHHHHHhhcC--CCCCeEEEEEECChHhCchHhhh--heee-eec
Confidence 235799999999984 4578899999984 56678999999999999999999 7643 444
No 280
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.79 E-value=0.00016 Score=66.83 Aligned_cols=112 Identities=19% Similarity=0.200 Sum_probs=66.9
Q ss_pred CceEECCCCChHHHHHHHHHHhcCC-------------CeeeeehhhHHHHhh------h------cchhHHHHHHHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGV-------------PFFSISGSEFVEMFV------G------VGASRVRDLFKKAK 320 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~-------------pfi~vs~sefve~~v------g------~~~~~vr~lF~~A~ 320 (418)
-+.|.||+|+|||+|.++++...|. ++.++.-.++.+.+- . .+..+.|-.+..|.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral 102 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASEL 102 (176)
T ss_pred EEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHH
Confidence 3789999999999999999743221 222332222333221 0 01234555666677
Q ss_pred hCC--CeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEe
Q 014798 321 ENA--PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 321 ~~a--P~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v 398 (418)
... |.++++||-.+- -+.+..+.+.+++.++.. .+..||.+|+..+.+ + ..|+.+.+
T Consensus 103 ~~~~~p~llLlDEPt~~----------LD~~~~~~l~~~l~~~~~----~g~tvIivSH~~~~~-----~--~~d~i~~l 161 (176)
T cd03238 103 FSEPPGTLFILDEPSTG----------LHQQDINQLLEVIKGLID----LGNTVILIEHNLDVL-----S--SADWIIDF 161 (176)
T ss_pred hhCCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHHH-----H--hCCEEEEE
Confidence 778 999999997442 345555566666665531 245677788866532 2 35666655
No 281
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.77 E-value=7.3e-05 Score=65.03 Aligned_cols=38 Identities=42% Similarity=0.712 Sum_probs=31.1
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhh
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 306 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg 306 (418)
++++||||||||++|+.++..++ ...++..++.....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~~ 39 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLAG 39 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHcc
Confidence 68999999999999999999998 556777776655443
No 282
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.77 E-value=1.5e-05 Score=67.71 Aligned_cols=30 Identities=43% Similarity=0.904 Sum_probs=26.2
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeeee
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~vs 296 (418)
++|.||||+||||+|+.+|.+++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 689999999999999999999987765443
No 283
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.76 E-value=2.7e-05 Score=83.71 Aligned_cols=63 Identities=22% Similarity=0.448 Sum_probs=44.6
Q ss_pred ccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-CCCeeeeeh
Q 014798 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISG 297 (418)
Q Consensus 229 ~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-~~pfi~vs~ 297 (418)
-|+|+.|++++++.+.+.+...... ++. ...-++|+||||+|||+||++||..+ ..|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~g-----l~~-~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQG-----LEE-KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHh-----cCC-CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 3789999999999887766321110 011 12368899999999999999999866 346666544
No 284
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.76 E-value=0.00012 Score=68.53 Aligned_cols=66 Identities=29% Similarity=0.498 Sum_probs=42.6
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCC----eeeeeh-hhHHHH----h-----hhcchhHHHHHHHHHHhCCCeEEEEcCC
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVP----FFSISG-SEFVEM----F-----VGVGASRVRDLFKKAKENAPCIVFVDEI 332 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~p----fi~vs~-sefve~----~-----vg~~~~~vr~lF~~A~~~aP~IIfIDEI 332 (418)
++++||+|+|||+++++++++...+ ++.+.. .++... + ++.......+.++.+....|.+|++||+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gEi 83 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGEM 83 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcCC
Confidence 7899999999999999998877422 222211 111100 0 1222334556667777778999999998
No 285
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.75 E-value=7.6e-05 Score=76.83 Aligned_cols=109 Identities=19% Similarity=0.388 Sum_probs=63.5
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc----C-CCeeeeehhhH-------HHH---hhhc------chhHHHHHHHHHHhC
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA----G-VPFFSISGSEF-------VEM---FVGV------GASRVRDLFKKAKEN 322 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el----~-~pfi~vs~sef-------ve~---~vg~------~~~~vr~lF~~A~~~ 322 (418)
...++|+||+|+|||+++..+|..+ + ..+..++...+ ... ..|. ....+...+... .
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l--~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL--R 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh--c
Confidence 3468999999999999999998764 3 24444444433 211 1121 112233333332 3
Q ss_pred CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCC-CCCeEEEEEeCCCCCcchhhh
Q 014798 323 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRADILDSALL 387 (418)
Q Consensus 323 aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~-~~~ViVIatTN~~~~LD~ALl 387 (418)
..++|+||...... ....+.+.+..+.+... ...++|+.+|+..+.++..+.
T Consensus 215 ~~DlVLIDTaG~~~-------------~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 215 NKHMVLIDTIGMSQ-------------RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred CCCEEEEcCCCCCc-------------ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 45799999974321 12234555555544332 345788888888888776544
No 286
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.75 E-value=0.00041 Score=64.16 Aligned_cols=59 Identities=19% Similarity=0.361 Sum_probs=36.8
Q ss_pred hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEe
Q 014798 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 321 ~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v 398 (418)
+..|.|+++||+.+.. +....+.++.++-..- ...++.|+..|+.++. +. | .+|+.|.+
T Consensus 149 q~~P~ILLLDE~TsAL----------D~~nkr~ie~mi~~~v---~~q~vAv~WiTHd~dq---a~-r--ha~k~itl 207 (223)
T COG4619 149 QFMPKILLLDEITSAL----------DESNKRNIEEMIHRYV---REQNVAVLWITHDKDQ---AI-R--HADKVITL 207 (223)
T ss_pred hcCCceEEecCchhhc----------ChhhHHHHHHHHHHHh---hhhceEEEEEecChHH---Hh-h--hhheEEEe
Confidence 4569999999997754 2333445555554432 1356888888987653 33 2 46666666
No 287
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.73 E-value=3.1e-05 Score=75.47 Aligned_cols=100 Identities=20% Similarity=0.300 Sum_probs=64.3
Q ss_pred CCCCcccccccCchHHHHHHHHHHHHh-cCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC-eeeeehhhHH
Q 014798 224 PNTGVTFDDVAGVDEAKQDFMEVVEFL-KKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-FFSISGSEFV 301 (418)
Q Consensus 224 ~~~~~~f~dV~G~de~k~eL~e~v~~l-~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p-fi~vs~sefv 301 (418)
....++++++.-.....+++.+++... +.. .++++.||+|+|||++++++..+.... ...+...+-.
T Consensus 97 ~~~~~sle~l~~~~~~~~~~~~~l~~~v~~~-----------~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~ 165 (270)
T PF00437_consen 97 SSKPFSLEDLGESGSIPEEIAEFLRSAVRGR-----------GNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPP 165 (270)
T ss_dssp TSS--CHCCCCHTHHCHHHHHHHHHHCHHTT-----------EEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS
T ss_pred ccccccHhhccCchhhHHHHHHHHhhccccc-----------eEEEEECCCccccchHHHHHhhhccccccceEEecccc
Confidence 345678888887776677776666653 222 269999999999999999999877443 2222222222
Q ss_pred HHhh---------h-cchhHHHHHHHHHHhCCCeEEEEcCCcc
Q 014798 302 EMFV---------G-VGASRVRDLFKKAKENAPCIVFVDEIDA 334 (418)
Q Consensus 302 e~~v---------g-~~~~~vr~lF~~A~~~aP~IIfIDEIDa 334 (418)
|... . .......+++..+....|++|+++||..
T Consensus 166 E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 166 ELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp -S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred ceeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 2111 1 2345678888999899999999999843
No 288
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.72 E-value=0.00024 Score=70.84 Aligned_cols=116 Identities=16% Similarity=0.184 Sum_probs=77.9
Q ss_pred ccCCCceEECCCCChHHHHHHHHHHhcCCC-------ee-eeehhhHHHH------hh---h--cchhHHHHHHHHHHh-
Q 014798 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FF-SISGSEFVEM------FV---G--VGASRVRDLFKKAKE- 321 (418)
Q Consensus 262 ~~p~gVLL~GPPGTGKT~LArAIA~el~~p-------fi-~vs~sefve~------~v---g--~~~~~vr~lF~~A~~- 321 (418)
+.+..+|++|| +||+++|+++|..+-.. .= .-+|..+... ++ | .+...+|++...+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 34568999996 68999999999866221 10 0111111100 11 1 134577777766543
Q ss_pred ---CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEe
Q 014798 322 ---NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 322 ---~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v 398 (418)
....|++||++|.+. ....|.||+-++. +..++++|..|+.++.+-|.+++ |. ..+.+
T Consensus 100 p~~~~~kV~II~~ad~m~--------------~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f 160 (290)
T PRK07276 100 GYEGKQQVFIIKDADKMH--------------VNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RT-QIFHF 160 (290)
T ss_pred cccCCcEEEEeehhhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cc-eeeeC
Confidence 234699999999994 4578899999984 45568899999999999999998 76 34556
No 289
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=0.00012 Score=66.54 Aligned_cols=102 Identities=26% Similarity=0.351 Sum_probs=62.0
Q ss_pred CceEECCCCChHHHHHHHHHHhcCC--CeeeeehhhH--------HHH--hh---------------hcchhHHHHHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEF--------VEM--FV---------------GVGASRVRDLFKK 318 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~--pfi~vs~sef--------ve~--~v---------------g~~~~~vr~lF~~ 318 (418)
-+.|.||+|+|||+|++++++.... --+.+++.+. ... |+ -.+..+.|-.+..
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~la~ 109 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAIAR 109 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHHHH
Confidence 4889999999999999999986521 0111222111 000 00 0112234445666
Q ss_pred HHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 319 A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
|....|.++++||-.+ +-+....+.+.+++.++.. +..+|.+|+..+.+
T Consensus 110 al~~~p~llllDEP~~----------gLD~~~~~~l~~~l~~~~~-----~~tii~~sh~~~~~ 158 (171)
T cd03228 110 ALLRDPPILILDEATS----------ALDPETEALILEALRALAK-----GKTVIVIAHRLSTI 158 (171)
T ss_pred HHhcCCCEEEEECCCc----------CCCHHHHHHHHHHHHHhcC-----CCEEEEEecCHHHH
Confidence 7778899999999644 2345556666777766631 25677888876654
No 290
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.72 E-value=8.5e-05 Score=80.25 Aligned_cols=56 Identities=30% Similarity=0.360 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 310 SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 310 ~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
+..|-.|+...-++|.++||||.-.- -+++.+..+.+++++. -.++.||..++++.
T Consensus 520 EqQRlafARilL~kP~~v~LDEATsA----------LDe~~e~~l~q~l~~~-----lp~~tvISV~Hr~t 575 (604)
T COG4178 520 EQQRLAFARLLLHKPKWVFLDEATSA----------LDEETEDRLYQLLKEE-----LPDATVISVGHRPT 575 (604)
T ss_pred HHHHHHHHHHHHcCCCEEEEecchhc----------cChHHHHHHHHHHHhh-----CCCCEEEEeccchh
Confidence 34555677777899999999997543 3566677777777652 24577888888765
No 291
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=0.00023 Score=74.38 Aligned_cols=164 Identities=20% Similarity=0.242 Sum_probs=98.6
Q ss_pred cccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-----CCCeeeeehhhHHH--
Q 014798 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEFVE-- 302 (418)
Q Consensus 230 f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~vs~sefve-- 302 (418)
-..+.|.+..+..+++++..-... ..+..+++.|-||||||.+...+-... ....++++|..+.+
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~--------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLEL--------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhc--------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 346778888888888777652222 224579999999999999999775433 22347788775321
Q ss_pred --------Hh----hhcchh-HHHHHHHH-HHhC-CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 014798 303 --------MF----VGVGAS-RVRDLFKK-AKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (418)
Q Consensus 303 --------~~----vg~~~~-~vr~lF~~-A~~~-aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~ 367 (418)
.+ ++.+.. .....|+. ..+. .+-++++||+|.++... +.++..+. +++.. .+
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----------~~vLy~lF-ewp~l-p~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----------QTVLYTLF-EWPKL-PN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----------cceeeeeh-hcccC-Cc
Confidence 12 121211 22233333 2223 37799999999997432 12333332 33332 35
Q ss_pred CCeEEEEEeCCCCCcchhhhC----CCccceEEEecCch--HHHHHHHHhhcc
Q 014798 368 TGIIVIAATNRADILDSALLR----PGRFDRQVKHVSLS--LMLWFLKTHSQY 414 (418)
Q Consensus 368 ~~ViVIatTN~~~~LD~ALlR----pGRFdr~I~v~~lP--~R~~IL~~~l~~ 414 (418)
.++++|+-+|..|.=|..|-| -+.-...+.|++|. +-.+||+-.+..
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc
Confidence 678999999988766665543 22334566775666 667777766554
No 292
>PRK07261 topology modulation protein; Provisional
Probab=97.70 E-value=4.8e-05 Score=69.70 Aligned_cols=31 Identities=23% Similarity=0.557 Sum_probs=28.0
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeeeeh
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~vs~ 297 (418)
++++|+||+||||||+.++..++.+++..+.
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 7899999999999999999999988877653
No 293
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.70 E-value=0.00015 Score=73.35 Aligned_cols=113 Identities=21% Similarity=0.284 Sum_probs=63.8
Q ss_pred CCceEECCCCChHHHHHHHHHHh---cCCCeeeeehhhHHHH-h---hhc------------chhHHHHHHHHHHhCCCe
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM-F---VGV------------GASRVRDLFKKAKENAPC 325 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~vs~sefve~-~---vg~------------~~~~vr~lF~~A~~~aP~ 325 (418)
+-+.++||||||||+||-.++.+ .+.+.++++..+-.+. + .|. .+..+..+-...+...++
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~ 135 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVD 135 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCC
Confidence 34889999999999999987643 3778888876542211 0 010 111111122223456789
Q ss_pred EEEEcCCcccccccC-CCCCCCC--hHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 326 IVFVDEIDAVGRQRG-TGIGGGN--DEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 326 IIfIDEIDal~~~r~-~~~~~~~--~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
+|+||-+.++.+... ++..+.. ....+.+.+.|..+...-...++.+|++..
T Consensus 136 lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 136 LIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred EEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 999999999875321 1111111 122334455555554444455677777654
No 294
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.70 E-value=0.00014 Score=75.16 Aligned_cols=110 Identities=22% Similarity=0.347 Sum_probs=58.2
Q ss_pred ceEECCCCChHHHHHHHHHHhcCC-----C-eeeeehh---h---HHHHhhh---------cchhHHH---HHHHHHH--
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGV-----P-FFSISGS---E---FVEMFVG---------VGASRVR---DLFKKAK-- 320 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~-----p-fi~vs~s---e---fve~~vg---------~~~~~vr---~lF~~A~-- 320 (418)
.+|+||||+|||+|++.|++.... . ++.+... + +.....| ....+++ ..++.|+
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999986633 2 2222222 1 1111111 1122232 3333332
Q ss_pred --hCCCeEEEEcCCcccccccCC-------CCC-CCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014798 321 --ENAPCIVFVDEIDAVGRQRGT-------GIG-GGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (418)
Q Consensus 321 --~~aP~IIfIDEIDal~~~r~~-------~~~-~~~~e~~~~L~~LL~emdg~~~~~~ViVIatT 376 (418)
.+...+||||||+.+.+.... ..+ +-+...-.....|+..-........+.+|+|.
T Consensus 252 ~e~G~dVlL~iDsItR~arAqrev~~~sG~~~sgG~~~~~~~~~~r~f~~Arn~e~~GSlT~i~T~ 317 (416)
T PRK09376 252 VEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATA 317 (416)
T ss_pred HHcCCCEEEEEEChHHHHHHHHhhhhccCCCCCCCCChhHhhhhHHHHHhhcCCCCCcceEEEEEE
Confidence 245679999999998764321 112 22223333444555543333333445566653
No 295
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.70 E-value=0.00015 Score=80.31 Aligned_cols=69 Identities=26% Similarity=0.300 Sum_probs=48.2
Q ss_pred chhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhh
Q 014798 308 GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALL 387 (418)
Q Consensus 308 ~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALl 387 (418)
|..+-|-.++.|.-+.|.|+++||.-+- -+.+.++.+.+-|.++.+ +..+|..|+|+..+.
T Consensus 612 GGQrQrlalARaLl~~P~ILlLDEaTSa----------LD~~sE~~I~~~L~~~~~-----~~T~I~IaHRl~ti~---- 672 (709)
T COG2274 612 GGQRQRLALARALLSKPKILLLDEATSA----------LDPETEAIILQNLLQILQ-----GRTVIIIAHRLSTIR---- 672 (709)
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcccc----------cCHhHHHHHHHHHHHHhc-----CCeEEEEEccchHhh----
Confidence 3456666777777889999999997543 466777777777777752 346788888766433
Q ss_pred CCCccceEEEe
Q 014798 388 RPGRFDRQVKH 398 (418)
Q Consensus 388 RpGRFdr~I~v 398 (418)
+.|+.+.+
T Consensus 673 ---~adrIiVl 680 (709)
T COG2274 673 ---SADRIIVL 680 (709)
T ss_pred ---hccEEEEc
Confidence 55666655
No 296
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.68 E-value=9e-05 Score=69.88 Aligned_cols=117 Identities=23% Similarity=0.261 Sum_probs=67.2
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHhc---C------CCeeeeehhhH------HHHhhh-----------------c
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---G------VPFFSISGSEF------VEMFVG-----------------V 307 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~el---~------~pfi~vs~sef------ve~~vg-----------------~ 307 (418)
|.+...-+.|+||||+|||+++..+|... + ...++++..+- .+.... .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 33434458899999999999999997653 3 56677766531 110000 0
Q ss_pred chhHHHHHHHHH----HhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 308 GASRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 308 ~~~~vr~lF~~A----~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
....+...+... ....+++|+||-+..+.+....+ .+...++.+.+.+++..+..+....++.||.+..
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~-~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tnq 167 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG-RGMLAERARLLSQALRKLLRLADKFNVAVVFTNQ 167 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC-CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEE
Confidence 111222223322 24577899999999886532111 0112344556677777666655555667776654
No 297
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.67 E-value=0.00029 Score=76.62 Aligned_cols=162 Identities=16% Similarity=0.268 Sum_probs=93.1
Q ss_pred cccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc----------CCCeeeeehhhHH
Q 014798 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISGSEFV 301 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~vs~sefv 301 (418)
.+.+.+....++..+++..-..+. . ...+++.|-||||||.+++.|-.++ ..+++.|++-.+.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~---~----g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~ 469 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQG---L----GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA 469 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCC---C----ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec
Confidence 344555566666665554322221 1 1258999999999999999997754 3467777776554
Q ss_pred HH---h-------hhcch------hHHHHHHHHH-HhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCC
Q 014798 302 EM---F-------VGVGA------SRVRDLFKKA-KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 364 (418)
Q Consensus 302 e~---~-------vg~~~------~~vr~lF~~A-~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~ 364 (418)
+. | .|+.. ..+..-|... .+..++||+|||+|.|.... +.++..++..--
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt-- 536 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT-- 536 (767)
T ss_pred CHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--
Confidence 32 2 22211 1222223211 23568999999999997542 446666665432
Q ss_pred CCCCCeEEEEEeCCCCCcchhhhC---CCccc-eEEEecCch--HHHHHHHHhhcc
Q 014798 365 EGNTGIIVIAATNRADILDSALLR---PGRFD-RQVKHVSLS--LMLWFLKTHSQY 414 (418)
Q Consensus 365 ~~~~~ViVIatTN~~~~LD~ALlR---pGRFd-r~I~v~~lP--~R~~IL~~~l~~ 414 (418)
..+..++||+.+|..+. ++.++- ..|++ +.|.|-++- +-.+|+...++.
T Consensus 537 ~~~sKLvvi~IaNTmdl-PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~ 591 (767)
T KOG1514|consen 537 LKNSKLVVIAIANTMDL-PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKG 591 (767)
T ss_pred CCCCceEEEEecccccC-HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcc
Confidence 23567888888887654 333331 12432 233342555 667777665543
No 298
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.67 E-value=0.00014 Score=68.92 Aligned_cols=116 Identities=22% Similarity=0.241 Sum_probs=65.1
Q ss_pred CccCCCceEECCCCChHHHHHHHHHHhc---------CCCeeeeehhhH------HHHh--hh---------------cc
Q 014798 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF------VEMF--VG---------------VG 308 (418)
Q Consensus 261 ~~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~vs~sef------ve~~--vg---------------~~ 308 (418)
.+...-+.|+||||||||+++..+|... +...++++..+- .+.. .+ ..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecCC
Confidence 3334458899999999999999997543 256777775441 1110 00 00
Q ss_pred hhHH----HHHHHHHHhC-CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 309 ASRV----RDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 309 ~~~v----r~lF~~A~~~-aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
...+ ..+-+...+. .+.+|+||-+.++......+. +...++.+.+.+++..+..+....++.|+.+..
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn~ 168 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGR-GELAERQQHLAKLLRTLKRLADEFNVAVVITNQ 168 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 1111 2222223345 789999999998754211110 012345556666666665554445666776654
No 299
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.67 E-value=9.4e-05 Score=68.97 Aligned_cols=120 Identities=18% Similarity=0.200 Sum_probs=57.2
Q ss_pred ceEECCCCChHHHHHHHH-HHh---cCCCeeeeehhhHH-HHhhhc----------------chhHHHHHHHHHHhCCCe
Q 014798 267 VLLVGPPGTGKTLLAKAI-AGE---AGVPFFSISGSEFV-EMFVGV----------------GASRVRDLFKKAKENAPC 325 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAI-A~e---l~~pfi~vs~sefv-e~~vg~----------------~~~~vr~lF~~A~~~aP~ 325 (418)
.+++|.||+|||+.|-.. ... .|.+++. +...+. +.+... .................+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999988655 433 3666555 433221 111110 000011111111111457
Q ss_pred EEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEe
Q 014798 326 IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 326 IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v 398 (418)
+|+|||+....+.|... .......+ +.+.+ ....++-++.+|-.+..||+.+++ ..+..+.+
T Consensus 82 liviDEa~~~~~~r~~~----~~~~~~~~-~~l~~----hRh~g~diiliTQ~~~~id~~ir~--lve~~~~~ 143 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK----GKKVPEII-EFLAQ----HRHYGWDIILITQSPSQIDKFIRD--LVEYHYHC 143 (193)
T ss_dssp EEEETTGGGTSB---T-----T----HHH-HGGGG----CCCTT-EEEEEES-GGGB-HHHHC--CEEEEEEE
T ss_pred EEEEECChhhcCCCccc----cccchHHH-HHHHH----hCcCCcEEEEEeCCHHHHhHHHHH--HHheEEEE
Confidence 99999999998877541 01112222 33333 224568899999999999999986 77666655
No 300
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.65 E-value=6.7e-05 Score=69.43 Aligned_cols=67 Identities=28% Similarity=0.437 Sum_probs=44.4
Q ss_pred CceEECCCCChHHHHHHHHHHhcCC--Ceeeeehh-hHHH---Hhh----------hcchhHHHHHHHHHHhCCCeEEEE
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGS-EFVE---MFV----------GVGASRVRDLFKKAKENAPCIVFV 329 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~--pfi~vs~s-efve---~~v----------g~~~~~vr~lF~~A~~~aP~IIfI 329 (418)
.+++.||+|+|||++++++++.... ..+.+... ++.- .++ +.......++++.+....|++|++
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~i 106 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRIIV 106 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEEE
Confidence 6999999999999999999987631 22222111 1100 000 112235677788888888999999
Q ss_pred cCC
Q 014798 330 DEI 332 (418)
Q Consensus 330 DEI 332 (418)
+|+
T Consensus 107 gEi 109 (186)
T cd01130 107 GEV 109 (186)
T ss_pred Ecc
Confidence 998
No 301
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.64 E-value=0.00022 Score=74.32 Aligned_cols=76 Identities=14% Similarity=0.198 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHh----cCCCeeeeehhhHHHHhhhcchhHHH
Q 014798 238 EAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGSEFVEMFVGVGASRVR 313 (418)
Q Consensus 238 e~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e----l~~pfi~vs~sefve~~vg~~~~~vr 313 (418)
.....|...+.++.+.. ++++.||+|||||+++.+++.+ .| -.++.++++.....
T Consensus 194 ~k~~~L~rl~~fve~~~-----------Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~------- 252 (449)
T TIGR02688 194 QKLLLLARLLPLVEPNY-----------NLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST------- 252 (449)
T ss_pred HHHHHHHhhHHHHhcCC-----------cEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH-------
Confidence 34444555556666655 8999999999999999998766 24 44455555443211
Q ss_pred HHHHHHHhCCCeEEEEcCCcccc
Q 014798 314 DLFKKAKENAPCIVFVDEIDAVG 336 (418)
Q Consensus 314 ~lF~~A~~~aP~IIfIDEIDal~ 336 (418)
..+.. -...++|+|||+..+.
T Consensus 253 ~~lg~--v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 253 RQIGL--VGRWDVVAFDEVATLK 273 (449)
T ss_pred HHHhh--hccCCEEEEEcCCCCc
Confidence 11111 2345799999998764
No 302
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.00046 Score=71.51 Aligned_cols=125 Identities=14% Similarity=0.223 Sum_probs=69.1
Q ss_pred cCCCceEECCCCChHHHHHHHHHHhc-------CCCeeeeehhhHH-------HHhh---h------cchhHHHHHHHHH
Q 014798 263 IPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSEFV-------EMFV---G------VGASRVRDLFKKA 319 (418)
Q Consensus 263 ~p~gVLL~GPPGTGKT~LArAIA~el-------~~pfi~vs~sefv-------e~~v---g------~~~~~vr~lF~~A 319 (418)
.|+.++|+||+|+|||+.+..+|..+ +..+..+++..+. ..|. | .....+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 35679999999999999999998754 2344444443321 1111 1 1222333333333
Q ss_pred HhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCC-CCeEEEEEeCCCCCcchhhhCCC--ccceEE
Q 014798 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN-TGIIVIAATNRADILDSALLRPG--RFDRQV 396 (418)
Q Consensus 320 ~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~-~~ViVIatTN~~~~LD~ALlRpG--RFdr~I 396 (418)
....+|+||++..... +. ..+.++...++..... +.++|+.+|.....+...+.+-. .++..|
T Consensus 253 --~~~DlVLIDTaGr~~~---------~~---~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I 318 (388)
T PRK12723 253 --KDFDLVLVDTIGKSPK---------DF---MKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVI 318 (388)
T ss_pred --CCCCEEEEcCCCCCcc---------CH---HHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEE
Confidence 3457999999866521 11 1244444444433322 45778877777777765554321 244555
Q ss_pred EecCch
Q 014798 397 KHVSLS 402 (418)
Q Consensus 397 ~v~~lP 402 (418)
.- .+-
T Consensus 319 ~T-KlD 323 (388)
T PRK12723 319 FT-KLD 323 (388)
T ss_pred EE-ecc
Confidence 43 443
No 303
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.64 E-value=0.00028 Score=71.74 Aligned_cols=68 Identities=21% Similarity=0.394 Sum_probs=45.2
Q ss_pred CceEECCCCChHHHHHHHHHHhcCC----Ceeeee-hhhHHHH---------hhhcchhHHHHHHHHHHhCCCeEEEEcC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGV----PFFSIS-GSEFVEM---------FVGVGASRVRDLFKKAKENAPCIVFVDE 331 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~----pfi~vs-~sefve~---------~vg~~~~~vr~lF~~A~~~aP~IIfIDE 331 (418)
.++++||+|+|||++++++.++... .++.+. ..++... -+|.......+.++.+....|++|++||
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vgE 203 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIGE 203 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEeC
Confidence 4889999999999999999886642 233221 1122110 1222223456777778888999999999
Q ss_pred Cc
Q 014798 332 ID 333 (418)
Q Consensus 332 ID 333 (418)
+.
T Consensus 204 ir 205 (343)
T TIGR01420 204 MR 205 (343)
T ss_pred CC
Confidence 83
No 304
>PRK06762 hypothetical protein; Provisional
Probab=97.63 E-value=0.00018 Score=64.78 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=33.8
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHh
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~ 304 (418)
|.-++|+|+||+|||++|+.++.+++..+..++...+...+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l 42 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM 42 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh
Confidence 34588999999999999999999997677777877766543
No 305
>PRK04296 thymidine kinase; Provisional
Probab=97.63 E-value=0.0003 Score=65.57 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=41.6
Q ss_pred ceEECCCCChHHHHHHHHHHhc---CCCeeeeehh----hHHHH---hhhcc-----hhHHHHHHHHHH--hCCCeEEEE
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS----EFVEM---FVGVG-----ASRVRDLFKKAK--ENAPCIVFV 329 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el---~~pfi~vs~s----efve~---~vg~~-----~~~vr~lF~~A~--~~aP~IIfI 329 (418)
.+++||+|+|||+++..++.++ +..++.+..+ ..... ..|.. .....++++.+. ...+.+|+|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvviI 84 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVLI 84 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEEE
Confidence 6899999999999998887665 5566655431 11000 11110 122344454443 345689999
Q ss_pred cCCccc
Q 014798 330 DEIDAV 335 (418)
Q Consensus 330 DEIDal 335 (418)
||+..+
T Consensus 85 DEaq~l 90 (190)
T PRK04296 85 DEAQFL 90 (190)
T ss_pred EccccC
Confidence 999654
No 306
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.62 E-value=0.00018 Score=63.90 Aligned_cols=97 Identities=26% Similarity=0.315 Sum_probs=59.0
Q ss_pred CceEECCCCChHHHHHHHHHHhcCC--Ceeeeehhh---HHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSE---FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRG 340 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~--pfi~vs~se---fve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~ 340 (418)
.+.|.||+|+|||+|++++++.... --+.+++.. ++..+ .+..+.|-.+..|....|.++++||-.+-
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~l--S~G~~~rv~laral~~~p~illlDEP~~~----- 100 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQL--SGGEKMRLALAKLLLENPNLLLLDEPTNH----- 100 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccC--CHHHHHHHHHHHHHhcCCCEEEEeCCccC-----
Confidence 4889999999999999999987521 001111100 00001 12234445567777788999999996542
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 341 TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 341 ~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
-+......+.+++.++. ..+|.+|+..+.
T Consensus 101 -----LD~~~~~~l~~~l~~~~-------~til~~th~~~~ 129 (144)
T cd03221 101 -----LDLESIEALEEALKEYP-------GTVILVSHDRYF 129 (144)
T ss_pred -----CCHHHHHHHHHHHHHcC-------CEEEEEECCHHH
Confidence 34445556666666541 257778876554
No 307
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=0.00017 Score=64.42 Aligned_cols=104 Identities=30% Similarity=0.409 Sum_probs=63.9
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCC--eeeeehhhHH-------HHhhh-----cchhHHHHHHHHHHhCCCeEEEEcC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVP--FFSISGSEFV-------EMFVG-----VGASRVRDLFKKAKENAPCIVFVDE 331 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~p--fi~vs~sefv-------e~~vg-----~~~~~vr~lF~~A~~~aP~IIfIDE 331 (418)
-+.|.||+|+|||+|++++++..... -+++++.+.. ...++ .+....|-.+..+....|.++++||
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilDE 106 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDE 106 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 58899999999999999999876321 1223322111 01111 1223445556667777899999999
Q ss_pred CcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcc
Q 014798 332 IDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (418)
Q Consensus 332 IDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD 383 (418)
...= .+.+....+.+++.++-. . +..++.+|+..+.+.
T Consensus 107 p~~~----------lD~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~~~ 144 (157)
T cd00267 107 PTSG----------LDPASRERLLELLRELAE---E-GRTVIIVTHDPELAE 144 (157)
T ss_pred CCcC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHHHH
Confidence 7553 344555666666666532 2 346778887665544
No 308
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.61 E-value=0.00025 Score=69.55 Aligned_cols=64 Identities=22% Similarity=0.294 Sum_probs=41.5
Q ss_pred chhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhh
Q 014798 308 GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALL 387 (418)
Q Consensus 308 ~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALl 387 (418)
|.++.|-+++.|..+.|.|+++||--.-. +-..+..+.+++..+. ...+..+|++.+ +++-|++
T Consensus 141 GGerQrv~iArALaQ~~~iLLLDEPTs~L----------Di~~Q~evl~ll~~l~---~~~~~tvv~vlH---DlN~A~r 204 (258)
T COG1120 141 GGERQRVLIARALAQETPILLLDEPTSHL----------DIAHQIEVLELLRDLN---REKGLTVVMVLH---DLNLAAR 204 (258)
T ss_pred hhHHHHHHHHHHHhcCCCEEEeCCCcccc----------CHHHHHHHHHHHHHHH---HhcCCEEEEEec---CHHHHHH
Confidence 45667778888888899999999964432 3334445555655553 234567888877 4444554
No 309
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.60 E-value=0.00057 Score=66.72 Aligned_cols=112 Identities=21% Similarity=0.328 Sum_probs=60.2
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCC------eeeee------hhhHHHHh--------hhcc-hhHH---HHHHHHHH-
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVP------FFSIS------GSEFVEMF--------VGVG-ASRV---RDLFKKAK- 320 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~p------fi~vs------~sefve~~--------vg~~-~~~v---r~lF~~A~- 320 (418)
-++|.||+|+|||+|++.+++..... ++.+. ..++.+.. .+.. ..++ +.+...|.
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~ 97 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKR 97 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 38999999999999999999877442 33322 22333332 1111 1111 12222222
Q ss_pred ---hCCCeEEEEcCCccccccc-------CCCCCCC-ChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 321 ---ENAPCIVFVDEIDAVGRQR-------GTGIGGG-NDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 321 ---~~aP~IIfIDEIDal~~~r-------~~~~~~~-~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
.+...++||||+..+.... |...+++ ....-..+.+++..-.....+..+..++|..
T Consensus 98 ~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~~ 165 (249)
T cd01128 98 LVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATAL 165 (249)
T ss_pred HHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeehe
Confidence 3457899999999885533 2222222 2223334456665433333344566665544
No 310
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.59 E-value=0.00038 Score=63.20 Aligned_cols=98 Identities=33% Similarity=0.487 Sum_probs=61.2
Q ss_pred CceEECCCCChHHHHHHHHHHhcCC-----------Ceeeeehh------hHHHHhh------hcchhHHHHHHHHHHhC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGV-----------PFFSISGS------EFVEMFV------GVGASRVRDLFKKAKEN 322 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~-----------pfi~vs~s------efve~~v------g~~~~~vr~lF~~A~~~ 322 (418)
-+.|.||+|+|||+|++++++.... .+.++... ...+... -.+..+.|-.+..|...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~~ 108 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLLH 108 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHHHc
Confidence 4889999999999999999986521 11111110 1111110 11334556667777788
Q ss_pred CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 323 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 323 aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
.|.++++||-.+- -+.+..+.+.+++.++ +..+|.+|++.+
T Consensus 109 ~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 109 KPKFVFLDEATSA----------LDEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred CCCEEEEECCccc----------cCHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 9999999997543 3555566666777664 145777777654
No 311
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.59 E-value=0.00074 Score=65.03 Aligned_cols=69 Identities=23% Similarity=0.347 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCC
Q 014798 310 SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRP 389 (418)
Q Consensus 310 ~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRp 389 (418)
++.|-.++.|..+.|.||+.||--. .-+.+....+..++.++. ...+..+|..|+.++ +..
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTg----------nLD~~t~~~V~~ll~~~~---~~~g~tii~VTHd~~-----lA~- 207 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTG----------NLDSKTAKEVLELLRELN---KERGKTIIMVTHDPE-----LAK- 207 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccc----------cCChHHHHHHHHHHHHHH---HhcCCEEEEEcCCHH-----HHH-
Confidence 4455566667778899999999422 235555566666666663 233567888888543 444
Q ss_pred CccceEEEe
Q 014798 390 GRFDRQVKH 398 (418)
Q Consensus 390 GRFdr~I~v 398 (418)
+.||.|.+
T Consensus 208 -~~dr~i~l 215 (226)
T COG1136 208 -YADRVIEL 215 (226)
T ss_pred -hCCEEEEE
Confidence 66777765
No 312
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.58 E-value=0.00027 Score=64.40 Aligned_cols=102 Identities=25% Similarity=0.410 Sum_probs=62.9
Q ss_pred CceEECCCCChHHHHHHHHHHhcCC--Ceeeeehhh--------HHHH--hh---------------hcchhHHHHHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSE--------FVEM--FV---------------GVGASRVRDLFKK 318 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~--pfi~vs~se--------fve~--~v---------------g~~~~~vr~lF~~ 318 (418)
-+.|.||+|+|||+|++++++.... --+.+++.+ +... |+ -.+..+.|-.+..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~ 109 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLAR 109 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHHH
Confidence 3889999999999999999986521 011122111 1000 00 1123345556777
Q ss_pred HHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 319 A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
|....|.++++||-.+- -+....+.+.+++.++.. .+..+|.+|+..+.
T Consensus 110 al~~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~~ 158 (173)
T cd03246 110 ALYGNPRILVLDEPNSH----------LDVEGERALNQAIAALKA----AGATRIVIAHRPET 158 (173)
T ss_pred HHhcCCCEEEEECCccc----------cCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHH
Confidence 77889999999996442 355556667777766632 24567788876543
No 313
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.58 E-value=0.00056 Score=65.75 Aligned_cols=40 Identities=33% Similarity=0.461 Sum_probs=29.9
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHh---cCCCeeeeehhh
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSE 299 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~vs~se 299 (418)
|.+....++++||||||||++|..++.+ .|.+.++++..+
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 4444556999999999999999876543 377888776554
No 314
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.58 E-value=0.00046 Score=65.61 Aligned_cols=112 Identities=18% Similarity=0.178 Sum_probs=58.1
Q ss_pred CCceEECCCCChHHHHHHHHHH-----hcCCCee--------------eeehhhHHHHhhhcchhHHHHHHH-HHHhCCC
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAG-----EAGVPFF--------------SISGSEFVEMFVGVGASRVRDLFK-KAKENAP 324 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~-----el~~pfi--------------~vs~sefve~~vg~~~~~vr~lF~-~A~~~aP 324 (418)
+.++|+||.|+|||++.|.++. ..|.... .+...+-+......-...++.+.. .+....|
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 4699999999999999999973 2233221 111111111111111112222211 1223568
Q ss_pred eEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhh
Q 014798 325 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 386 (418)
Q Consensus 325 ~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~AL 386 (418)
++++|||+.+-. ...+....+..++..+-.. ...+..+|.+|+..+.+....
T Consensus 110 slvllDE~~~gt---------d~~~~~~~~~ail~~l~~~-~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 110 SLVLIDEFGKGT---------DTEDGAGLLIATIEHLLKR-GPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred cEEEeccccCCC---------CHHHHHHHHHHHHHHHHhc-CCCCcEEEEEcChHHHHHhhh
Confidence 999999985421 1123344445566655321 112347888888776555443
No 315
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.57 E-value=0.00023 Score=65.93 Aligned_cols=103 Identities=18% Similarity=0.160 Sum_probs=61.0
Q ss_pred CceEECCCCChHHHHHHHHHHhcCC--CeeeeehhhH--HHHhh-hcchhHHHHHHHHHHhCCCeEEEEcCCcccccccC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEF--VEMFV-GVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRG 340 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~--pfi~vs~sef--ve~~v-g~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~ 340 (418)
-+.|.||+|+|||+|++.+++.... --+.+++..+ +.... -.+..+.|-.+..+....|.++++||-.+-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~----- 101 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAY----- 101 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCccc-----
Confidence 4889999999999999999986521 1112221110 00000 112335556677777788999999997442
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 341 TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 341 ~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
-+....+.+.+++.++. ...+..+|.+|+..+.
T Consensus 102 -----LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~ 134 (177)
T cd03222 102 -----LDIEQRLNAARAIRRLS---EEGKKTALVVEHDLAV 134 (177)
T ss_pred -----CCHHHHHHHHHHHHHHH---HcCCCEEEEEECCHHH
Confidence 34455555556665542 1222467777776543
No 316
>PRK13695 putative NTPase; Provisional
Probab=97.57 E-value=0.00044 Score=62.99 Aligned_cols=22 Identities=45% Similarity=0.668 Sum_probs=20.1
Q ss_pred ceEECCCCChHHHHHHHHHHhc
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el 288 (418)
++|+|++|+|||+|++.+++++
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998765
No 317
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.56 E-value=0.00042 Score=69.02 Aligned_cols=96 Identities=25% Similarity=0.318 Sum_probs=60.6
Q ss_pred cccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc-----CCCeeee-------ehh
Q 014798 232 DVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSI-------SGS 298 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~v-------s~s 298 (418)
.+.|+.-+++.+...+.. +.++. -+.|..+=|+|++||||...++.||+.+ .-+++.. .-.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 478999999988887765 65554 2335556689999999999999999865 1122110 011
Q ss_pred hHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccc
Q 014798 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVG 336 (418)
Q Consensus 299 efve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~ 336 (418)
..++.|-.+-..++++- +...+.+|.++||.|.+.
T Consensus 157 ~~ie~Yk~eL~~~v~~~---v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGT---VQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHHHH---HHhcCCceEEechhhhcC
Confidence 12233333333334333 334556799999999994
No 318
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.56 E-value=0.00038 Score=63.66 Aligned_cols=102 Identities=21% Similarity=0.223 Sum_probs=62.7
Q ss_pred CceEECCCCChHHHHHHHHHHhcCC--CeeeeehhhHH------HH---h----------------hh--cchhHHHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFV------EM---F----------------VG--VGASRVRDLF 316 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~--pfi~vs~sefv------e~---~----------------vg--~~~~~vr~lF 316 (418)
.+.|.||+|+|||+|++++++.... --+.+++.+.. .. | .. .+..+.|-.+
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~l 109 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLAL 109 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHHH
Confidence 4889999999999999999986521 11222221110 00 0 00 1123445566
Q ss_pred HHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 317 KKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 317 ~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
..|....|.++++||-.+- -+....+.+.+++.++. . +..+|.+|+.++.+
T Consensus 110 aral~~~p~~lllDEP~~~----------LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~~ 160 (178)
T cd03247 110 ARILLQDAPIVLLDEPTVG----------LDPITERQLLSLIFEVL----K-DKTLIWITHHLTGI 160 (178)
T ss_pred HHHHhcCCCEEEEECCccc----------CCHHHHHHHHHHHHHHc----C-CCEEEEEecCHHHH
Confidence 7777788999999997542 35555667777777663 1 34677777766543
No 319
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.56 E-value=0.00027 Score=66.96 Aligned_cols=108 Identities=23% Similarity=0.288 Sum_probs=60.3
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHhc----CCCeeeeehhhHHH----H----------hhhc--------c-----
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVE----M----------FVGV--------G----- 308 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~vs~sefve----~----------~vg~--------~----- 308 (418)
|.+.+..+|+.||||||||+++..++.+. |.+.++++..+-.+ . +... .
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 44444559999999999999999775432 78888887543221 1 1000 0
Q ss_pred ------hhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 309 ------ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 309 ------~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
......+.+......+++++||-+..+. .. .........+..+...+. ..++.++.++.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~-~~-----~~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSALL-LY-----DDPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHT-TS-----SSGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHh-hc-----CCHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 1112233333445567899999999982 21 122334445666666653 23455555555
No 320
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.56 E-value=0.00024 Score=68.96 Aligned_cols=39 Identities=31% Similarity=0.339 Sum_probs=29.2
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHhc----CCCeeeeehh
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~vs~s 298 (418)
|.....-++|.||||+|||+++..+|..+ +.++.+++..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 34444458899999999999999886653 6677777653
No 321
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.55 E-value=0.00054 Score=57.25 Aligned_cols=23 Identities=48% Similarity=0.533 Sum_probs=20.6
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
+++++||+|+|||+.+-.++.++
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999999887765
No 322
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=0.00021 Score=65.50 Aligned_cols=104 Identities=26% Similarity=0.378 Sum_probs=62.6
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCC--eeeeehh----------hHHH----------Hhh-----------hcchhHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVP--FFSISGS----------EFVE----------MFV-----------GVGASRV 312 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~p--fi~vs~s----------efve----------~~v-----------g~~~~~v 312 (418)
-+.|.||+|+|||+|++++++..... -+.+++. .+.. .+. -.+..+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~q 107 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQ 107 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHHHHH
Confidence 37899999999999999999864210 0111110 0000 000 1112344
Q ss_pred HHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 313 RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 313 r~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
|-.+..|....|.++++||-.+ +-+......+.+++.++.. ..+..+|.+|+.++.+
T Consensus 108 r~~la~al~~~p~llilDEP~~----------~LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~~~ 164 (178)
T cd03229 108 RVALARALAMDPDVLLLDEPTS----------ALDPITRREVRALLKSLQA---QLGITVVLVTHDLDEA 164 (178)
T ss_pred HHHHHHHHHCCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHH
Confidence 5566777778899999999644 3455666677777777642 1135677777765544
No 323
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.52 E-value=0.00016 Score=63.74 Aligned_cols=37 Identities=32% Similarity=0.668 Sum_probs=30.2
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~ 304 (418)
+++|+|+||+|||++|+.+|.+++.+++..+ ++....
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d--~~~~~~ 37 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQR 37 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch--HHHHHH
Confidence 3789999999999999999999998877544 444443
No 324
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.52 E-value=0.00041 Score=65.20 Aligned_cols=60 Identities=22% Similarity=0.382 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcc
Q 014798 310 SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (418)
Q Consensus 310 ~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD 383 (418)
+..|-.++.|--+.|.+++-||- .+.-+++...-+.++++++. .-+..|+.||+..+.++
T Consensus 142 EQQRvaIARAiV~~P~vLlADEP----------TGNLDp~~s~~im~lfeein----r~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEP----------TGNLDPDLSWEIMRLFEEIN----RLGTTVLMATHDLELVN 201 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCC----------CCCCChHHHHHHHHHHHHHh----hcCcEEEEEeccHHHHH
Confidence 34455666677789999999994 22345555566667777765 34567888887554443
No 325
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.51 E-value=0.00041 Score=63.76 Aligned_cols=102 Identities=21% Similarity=0.293 Sum_probs=60.7
Q ss_pred CceEECCCCChHHHHHHHHHHhcCC----------C-------------eeeeehh----hH------HHHh-h---hcc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGV----------P-------------FFSISGS----EF------VEMF-V---GVG 308 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~----------p-------------fi~vs~s----ef------ve~~-v---g~~ 308 (418)
.+.|.||+|+|||+|++.+++.... + +.++.-. .+ .+.. . -.+
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~LS~ 107 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSLLSG 107 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhhcCH
Confidence 4889999999999999999986410 1 0111000 00 0000 0 011
Q ss_pred hhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 309 ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 309 ~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
..+.|-.+..|....|.++++||-.+ +-+....+.+.+++.++.. .+..+|.+|+..+.
T Consensus 108 G~~qrl~la~al~~~p~llllDEP~~----------~LD~~~~~~l~~~l~~~~~----~~~tiii~sh~~~~ 166 (182)
T cd03215 108 GNQQKVVLARWLARDPRVLILDEPTR----------GVDVGAKAEIYRLIRELAD----AGKAVLLISSELDE 166 (182)
T ss_pred HHHHHHHHHHHHccCCCEEEECCCCc----------CCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHH
Confidence 22333445666667899999999644 3456666777777777642 23567777776543
No 326
>PRK14974 cell division protein FtsY; Provisional
Probab=97.49 E-value=0.001 Score=67.63 Aligned_cols=72 Identities=31% Similarity=0.438 Sum_probs=44.7
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhH-------HHHhh---hc-------c---hhHHHHHHHHHH
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF-------VEMFV---GV-------G---ASRVRDLFKKAK 320 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sef-------ve~~v---g~-------~---~~~vr~lF~~A~ 320 (418)
|.-++|+||||+|||+++..+|..+ +..+..+++.-+ ...+. |. + ...+.+..+.++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~ 219 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK 219 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence 5679999999999999988888755 455555554422 11111 11 0 122344455555
Q ss_pred hCCCeEEEEcCCccc
Q 014798 321 ENAPCIVFVDEIDAV 335 (418)
Q Consensus 321 ~~aP~IIfIDEIDal 335 (418)
....++|+||....+
T Consensus 220 ~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 220 ARGIDVVLIDTAGRM 234 (336)
T ss_pred hCCCCEEEEECCCcc
Confidence 556679999997554
No 327
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=97.49 E-value=8.1e-05 Score=78.24 Aligned_cols=169 Identities=22% Similarity=0.259 Sum_probs=94.6
Q ss_pred cccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeee-ehhhHHHHhhhcchh
Q 014798 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI-SGSEFVEMFVGVGAS 310 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~v-s~sefve~~vg~~~~ 310 (418)
+|.|.+++|+.|.-++----....-..+.++..-+|+|.|.||+.|+-|.+.|.+-+-...+.- .+|.= ||.++.
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSG----VGLTAA 418 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSG----VGLTAA 418 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCc----cccchh
Confidence 5889999999887655432221111223333445799999999999999999988664433332 11110 122222
Q ss_pred HHHHHHHH-------HH-hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHH----h--cCC--CCCCCeEEEE
Q 014798 311 RVRDLFKK-------AK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE----M--DGF--EGNTGIIVIA 374 (418)
Q Consensus 311 ~vr~lF~~-------A~-~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~e----m--dg~--~~~~~ViVIa 374 (418)
-.++-... |. -....|.+|||+|++.... ...+.+.+++ + .|+ ..|.+.-|+|
T Consensus 419 VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~D-----------RtAIHEVMEQQTISIaKAGI~TtLNAR~sILa 487 (721)
T KOG0482|consen 419 VMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESD-----------RTAIHEVMEQQTISIAKAGINTTLNARTSILA 487 (721)
T ss_pred hhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhh-----------hHHHHHHHHhhhhhhhhhccccchhhhHHhhh
Confidence 11111000 00 0123499999999995321 1122333222 1 121 1244577899
Q ss_pred EeCCCC-------------CcchhhhCCCccceEEEecCch--HH-----HHHHHHhhccCCC
Q 014798 375 ATNRAD-------------ILDSALLRPGRFDRQVKHVSLS--LM-----LWFLKTHSQYKDP 417 (418)
Q Consensus 375 tTN~~~-------------~LD~ALlRpGRFdr~I~v~~lP--~R-----~~IL~~~l~~k~p 417 (418)
|+|... .|+.||++ |||..+.+-+.| +- ..|.-+|.-+++|
T Consensus 488 AANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp 548 (721)
T KOG0482|consen 488 AANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQP 548 (721)
T ss_pred hcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCC
Confidence 998432 58999999 999887776788 22 3444455544443
No 328
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.48 E-value=0.00019 Score=67.17 Aligned_cols=96 Identities=25% Similarity=0.368 Sum_probs=52.4
Q ss_pred CceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHH----HhhhcchhHHHHHHHHHH---------hCCCeEEEE
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----MFVGVGASRVRDLFKKAK---------ENAPCIVFV 329 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve----~~vg~~~~~vr~lF~~A~---------~~aP~IIfI 329 (418)
.++|.||||||||++++.++..+ +..++.+..+.-.. .-.+.....+..++.... .....+|+|
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 47788999999999999986544 66777666553221 112223334444332221 123469999
Q ss_pred cCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 330 DEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
||+-.+. ...+..++..... ...++++++=.+
T Consensus 100 DEasmv~--------------~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 100 DEASMVD--------------SRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp SSGGG-B--------------HHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred ecccccC--------------HHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 9997774 3356667766653 123455555444
No 329
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.48 E-value=0.00079 Score=66.17 Aligned_cols=94 Identities=20% Similarity=0.289 Sum_probs=56.0
Q ss_pred cccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcC---CCeeeee-hhhHHHH
Q 014798 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSIS-GSEFVEM 303 (418)
Q Consensus 228 ~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~---~pfi~vs-~sefve~ 303 (418)
.+++++.-.++..+.+++++ ..+. ..+++.||+|+|||++++++..+.. ..++.+. ..++.-.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~---~~~~----------GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLL---EKPH----------GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHH---hcCC----------CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 45667654444444443333 2222 1388999999999999999977663 2344432 1111100
Q ss_pred -----hhh-cchhHHHHHHHHHHhCCCeEEEEcCCcc
Q 014798 304 -----FVG-VGASRVRDLFKKAKENAPCIVFVDEIDA 334 (418)
Q Consensus 304 -----~vg-~~~~~vr~lF~~A~~~aP~IIfIDEIDa 334 (418)
-+. .......+.+..+....|++|+++|+..
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 011 1122456777788888999999999843
No 330
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.48 E-value=0.00016 Score=72.36 Aligned_cols=67 Identities=30% Similarity=0.373 Sum_probs=47.4
Q ss_pred CCceEECCCCChHHHHHHHHHHhcC-----CCeeeeehhhHHHH----------hhhcchhHHHHHHHHHHhCCCeEEEE
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSISGSEFVEM----------FVGVGASRVRDLFKKAKENAPCIVFV 329 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~-----~pfi~vs~sefve~----------~vg~~~~~vr~lF~~A~~~aP~IIfI 329 (418)
++++++||+|+|||+++++++++.. ..++.+ .+-.|. ....+.....+++..+....|+.|++
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~ti--Ed~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVII--EDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEE--CCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 3799999999999999999998762 223333 222221 11122226778889999999999999
Q ss_pred cCCc
Q 014798 330 DEID 333 (418)
Q Consensus 330 DEID 333 (418)
.|+-
T Consensus 211 GEiR 214 (299)
T TIGR02782 211 GEVR 214 (299)
T ss_pred eccC
Confidence 9984
No 331
>PRK13947 shikimate kinase; Provisional
Probab=97.47 E-value=9.5e-05 Score=66.71 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=28.3
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs 296 (418)
+++|+|+||||||++++.+|.+++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999999987654
No 332
>PRK09354 recA recombinase A; Provisional
Probab=97.46 E-value=0.00046 Score=70.49 Aligned_cols=112 Identities=23% Similarity=0.277 Sum_probs=60.5
Q ss_pred CCceEECCCCChHHHHHHHHHHh---cCCCeeeeehhhHHHH-h---hhc------------chhHHHHHHHHHHhCCCe
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM-F---VGV------------GASRVRDLFKKAKENAPC 325 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~vs~sefve~-~---vg~------------~~~~vr~lF~~A~~~aP~ 325 (418)
+-+.++||||||||+||-.++.+ .+...++++..+-.+. + .|. .+..+..+-...+...+.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~ 140 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVD 140 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCC
Confidence 34889999999999999877543 3777788876642221 0 010 111111111223456789
Q ss_pred EEEEcCCccccccc-CCCCCCCC--hHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014798 326 IVFVDEIDAVGRQR-GTGIGGGN--DEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (418)
Q Consensus 326 IIfIDEIDal~~~r-~~~~~~~~--~e~~~~L~~LL~emdg~~~~~~ViVIatT 376 (418)
+|+||-+-++.+.. -++..+.. ....+.+.+.|..+-..-...++.+|++.
T Consensus 141 lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~itvI~tN 194 (349)
T PRK09354 141 LIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSNTTVIFIN 194 (349)
T ss_pred EEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcCcEEEEEE
Confidence 99999999987521 11111111 12233444444444333334556666664
No 333
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.46 E-value=0.0003 Score=64.16 Aligned_cols=33 Identities=27% Similarity=0.560 Sum_probs=26.9
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv 301 (418)
++++||||+|||++|+.+|.+++.+.+ +..+++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~i--s~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHL--SAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECChHH
Confidence 689999999999999999999986554 444443
No 334
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.46 E-value=0.00088 Score=63.43 Aligned_cols=109 Identities=24% Similarity=0.263 Sum_probs=62.0
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHhh------h--------c-------chh----H
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------G--------V-------GAS----R 311 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~v------g--------~-------~~~----~ 311 (418)
|.+...-+++.|+||+|||+++..+|.+. +.+.++++..+-.+.+. + . ... .
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 33334458899999999999999886543 77777777654322210 0 0 000 0
Q ss_pred HHH----HHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 312 VRD----LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 312 vr~----lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
+.+ +.....+..++.++||-+..+-.. .+...+..+.+..++..+.. .++.++++++
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~-----~~~~~~~r~~l~~l~~~lk~----~~~tvll~s~ 152 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETL-----FDDDAERRTELFRFYSSLRE----TGVTTILTSE 152 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhh-----cCCHHHHHHHHHHHHHHHHh----CCCEEEEEEc
Confidence 111 112233456788999988876211 12234445566777777642 3456666665
No 335
>PRK13948 shikimate kinase; Provisional
Probab=97.46 E-value=0.00038 Score=64.84 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=33.3
Q ss_pred cCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhh
Q 014798 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (418)
Q Consensus 263 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~v 305 (418)
.+..++|+|.+|||||++++.+|+.++.+|+..+ .+.+...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~ 49 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVT 49 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHH
Confidence 4567999999999999999999999999998554 4444433
No 336
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.45 E-value=0.00037 Score=61.27 Aligned_cols=52 Identities=25% Similarity=0.356 Sum_probs=40.7
Q ss_pred ccccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc
Q 014798 231 DDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 231 ~dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el 288 (418)
+.|.|++-+.+.+.+.+.. +.++. -+.|..+-++||||||||.+++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3689999999999887776 55542 2234456699999999999999999975
No 337
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.45 E-value=5.1e-05 Score=68.46 Aligned_cols=59 Identities=24% Similarity=0.422 Sum_probs=35.5
Q ss_pred ccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCC---eeeeehhhH
Q 014798 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGSEF 300 (418)
Q Consensus 233 V~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~p---fi~vs~sef 300 (418)
++|.++..+++...++. ... ..++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~~~--------~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-AQS--------GSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-TSS-------------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-HHc--------CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 46777777777666641 111 234689999999999999999997665322 777776665
No 338
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.00069 Score=61.74 Aligned_cols=102 Identities=25% Similarity=0.282 Sum_probs=61.6
Q ss_pred CceEECCCCChHHHHHHHHHHhcCC--Ceeeeehh-------hH-------------------HHHhhhcchhHHHHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGS-------EF-------------------VEMFVGVGASRVRDLFK 317 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~--pfi~vs~s-------ef-------------------ve~~vg~~~~~vr~lF~ 317 (418)
.+.|.||+|+|||+|++.+|+.... --+.+++. ++ .+...-.+..+.|-.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~la 107 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLALA 107 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHHH
Confidence 4889999999999999999986410 00111110 00 00000112334455677
Q ss_pred HHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 318 KAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 318 ~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
.|....|.++++||-.+- -+......+.+++.++.. . +..+|.+|+.++.
T Consensus 108 ral~~~p~illlDEPt~~----------LD~~~~~~l~~~l~~~~~---~-g~tiii~th~~~~ 157 (173)
T cd03230 108 QALLHDPELLILDEPTSG----------LDPESRREFWELLRELKK---E-GKTILLSSHILEE 157 (173)
T ss_pred HHHHcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEECCCHHH
Confidence 777889999999997553 355556666777766532 2 3467777776553
No 339
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.43 E-value=0.00055 Score=65.23 Aligned_cols=39 Identities=28% Similarity=0.379 Sum_probs=29.7
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHhc----CCCeeeeehh
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~vs~s 298 (418)
|.....-++|.|+||+|||+++..+|..+ +.++++++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 44444558899999999999999886543 7788777744
No 340
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.43 E-value=0.00051 Score=63.03 Aligned_cols=104 Identities=25% Similarity=0.346 Sum_probs=62.3
Q ss_pred CceEECCCCChHHHHHHHHHHhcCC--Ceeeeehh--------hHH-------------------HHhhh--cchhHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGS--------EFV-------------------EMFVG--VGASRVRD 314 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~--pfi~vs~s--------efv-------------------e~~vg--~~~~~vr~ 314 (418)
-+.|.||+|+|||+|++.+++.... --+.+++. .+. ..... .+..+.|-
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qrl 106 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQRV 106 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHHH
Confidence 4889999999999999999986511 01112111 000 00000 02234445
Q ss_pred HHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 315 LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 315 lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
.+..|....|.++++||-.+ +-+....+.+.+++.++.. ..+..+|.+|+.++.+
T Consensus 107 ~laral~~~p~llllDEP~~----------~LD~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~~~ 161 (180)
T cd03214 107 LLARALAQEPPILLLDEPTS----------HLDIAHQIELLELLRRLAR---ERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHhcCCCEEEEeCCcc----------CCCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHHH
Confidence 56666678899999999644 2355556677777776632 1135677788876643
No 341
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.43 E-value=0.00085 Score=69.72 Aligned_cols=117 Identities=20% Similarity=0.200 Sum_probs=67.0
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGG 345 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~ 345 (418)
-++|+||-+||||++++.+.+...-.+++++..|........ ......+..+.....+.||+|||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc----------
Confidence 689999999999999999888875556666655543321111 12222222232224479999999887
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 346 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 346 ~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
++.+..+..+..... . ++++.+++...-....+-.=+||....... |+.
T Consensus 107 --~~W~~~lk~l~d~~~---~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~-PlS 155 (398)
T COG1373 107 --PDWERALKYLYDRGN---L--DVLITGSSSSLLSKEISESLAGRGKDLELY-PLS 155 (398)
T ss_pred --hhHHHHHHHHHcccc---c--eEEEECCchhhhccchhhhcCCCceeEEEC-CCC
Confidence 235566666654322 1 344444433333333344446896544444 555
No 342
>PRK13946 shikimate kinase; Provisional
Probab=97.43 E-value=0.00043 Score=63.92 Aligned_cols=33 Identities=33% Similarity=0.639 Sum_probs=30.2
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeeee
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs 296 (418)
++.|+|+|++|||||++++.+|..++.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 457999999999999999999999999988765
No 343
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.42 E-value=0.0002 Score=73.05 Aligned_cols=27 Identities=56% Similarity=0.858 Sum_probs=22.3
Q ss_pred CCccCCC--ceEECCCCChHHHHHHHHHH
Q 014798 260 GARIPKG--VLLVGPPGTGKTLLAKAIAG 286 (418)
Q Consensus 260 G~~~p~g--VLL~GPPGTGKT~LArAIA~ 286 (418)
...+..| +-|.||+||||||+.|+||+
T Consensus 25 sl~i~~Gef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 25 SLDIKKGEFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred eeeecCCcEEEEECCCCCCHHHHHHHHhC
Confidence 3444455 66999999999999999998
No 344
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.42 E-value=0.0012 Score=66.80 Aligned_cols=157 Identities=22% Similarity=0.361 Sum_probs=91.3
Q ss_pred cccCchHHHHHHHHHHHH-hcCchhhhhcCCccCCCceEECCCCChHHHHHHHH---HHhcCCCeeeeehhhHH--HH--
Q 014798 232 DVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAI---AGEAGVPFFSISGSEFV--EM-- 303 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~-l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAI---A~el~~pfi~vs~sefv--e~-- 303 (418)
.+.|..+..+++.+++.. +-..+ ...|++.||.|+|||.+.... +++.+-+|+.+....+. ++
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gE---------snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGE---------SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcC---------CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 356766777777777765 32222 236999999999999887644 34667777766433221 11
Q ss_pred -----------------hhhcchhHHHHHHHHHHh-----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHh
Q 014798 304 -----------------FVGVGASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 361 (418)
Q Consensus 304 -----------------~vg~~~~~vr~lF~~A~~-----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~em 361 (418)
..|.....+..+++..++ ..+.|.++||||..++. .++..+..|++.-
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h----------~rQtllYnlfDis 165 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH----------SRQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc----------hhhHHHHHHHHHH
Confidence 112223334444444333 23445566799998632 2233444454433
Q ss_pred cCCCCCCCeEEEEEeCCCCCc---chhhhCCCccceE-EEecCch----HHHHHHHHhh
Q 014798 362 DGFEGNTGIIVIAATNRADIL---DSALLRPGRFDRQ-VKHVSLS----LMLWFLKTHS 412 (418)
Q Consensus 362 dg~~~~~~ViVIatTN~~~~L---D~ALlRpGRFdr~-I~v~~lP----~R~~IL~~~l 412 (418)
. .....+.||+.|.+-+.+ .....+ ||-.. |.+ ..| +-..+++..+
T Consensus 166 q--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m-~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 166 Q--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFM-LPSLPLGDYVDLYRKLL 219 (408)
T ss_pred h--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeec-cCCCChHHHHHHHHHHh
Confidence 3 224468899999887754 445556 99655 555 322 6667766554
No 345
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.42 E-value=0.0013 Score=62.40 Aligned_cols=38 Identities=32% Similarity=0.424 Sum_probs=27.8
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHh---cCCCeeeeeh
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISG 297 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~vs~ 297 (418)
|......+++.||||||||+++..++.+ .+.+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3444456999999999999999987643 2556666664
No 346
>PRK03839 putative kinase; Provisional
Probab=97.41 E-value=0.00011 Score=67.14 Aligned_cols=30 Identities=30% Similarity=0.677 Sum_probs=27.5
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeeee
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~vs 296 (418)
++|.|+||+||||+++.+|+.++.+++.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999887654
No 347
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.41 E-value=0.0004 Score=64.94 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=19.4
Q ss_pred CceEECCCCChHHHHHHHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAG 286 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~ 286 (418)
-++|+||.|+|||++.++++.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEEECCCCCccHHHHHHHHH
Confidence 489999999999999999983
No 348
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.41 E-value=0.00073 Score=73.05 Aligned_cols=67 Identities=18% Similarity=0.137 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCC
Q 014798 310 SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRP 389 (418)
Q Consensus 310 ~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRp 389 (418)
++.|=.+..|.-..|.|+++||.-+- -|.+.++.+.+.+.++. .+..+|..|++++.+ +
T Consensus 490 QrQRialARAll~~~~IliLDE~TSa----------LD~~te~~i~~~l~~~~-----~~~TvIiItHrl~~i-----~- 548 (588)
T PRK11174 490 QAQRLALARALLQPCQLLLLDEPTAS----------LDAHSEQLVMQALNAAS-----RRQTTLMVTHQLEDL-----A- 548 (588)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHh-----CCCEEEEEecChHHH-----H-
Confidence 34455555666677899999997553 35556666666665542 234677788876433 2
Q ss_pred CccceEEEe
Q 014798 390 GRFDRQVKH 398 (418)
Q Consensus 390 GRFdr~I~v 398 (418)
.+|+.+.+
T Consensus 549 -~aD~Iivl 556 (588)
T PRK11174 549 -QWDQIWVM 556 (588)
T ss_pred -hCCEEEEE
Confidence 45666655
No 349
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.41 E-value=0.00032 Score=71.18 Aligned_cols=67 Identities=22% Similarity=0.354 Sum_probs=46.7
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCC--CeeeeehhhHHHHh----------------hhcchhHHHHHHHHHHhCCCeE
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFVEMF----------------VGVGASRVRDLFKKAKENAPCI 326 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~--pfi~vs~sefve~~----------------vg~~~~~vr~lF~~A~~~aP~I 326 (418)
++++++|++|+|||+++++++.+... .++.+ .+-.|.. .+...-...++++.+....|+.
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~ti--Ed~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~ 238 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITV--EDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDR 238 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEe--cCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCe
Confidence 48999999999999999999887632 22222 1111110 0112235678899999999999
Q ss_pred EEEcCCc
Q 014798 327 VFVDEID 333 (418)
Q Consensus 327 IfIDEID 333 (418)
|++.|+.
T Consensus 239 IivGEiR 245 (332)
T PRK13900 239 IIVGELR 245 (332)
T ss_pred EEEEecC
Confidence 9999984
No 350
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.40 E-value=0.00055 Score=73.05 Aligned_cols=32 Identities=31% Similarity=0.673 Sum_probs=24.6
Q ss_pred hhcCCccCCC--ceEECCCCChHHHHHHHHHHhc
Q 014798 257 TAIGARIPKG--VLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 257 ~~lG~~~p~g--VLL~GPPGTGKT~LArAIA~el 288 (418)
+.+....++| +.|+||+|+|||||++.+++..
T Consensus 352 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 385 (529)
T TIGR02868 352 DGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL 385 (529)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3334444444 9999999999999999998755
No 351
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.40 E-value=0.00029 Score=70.61 Aligned_cols=67 Identities=24% Similarity=0.452 Sum_probs=45.9
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCC--CeeeeehhhHHHHh---------------hhcchhHHHHHHHHHHhCCCeEE
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFVEMF---------------VGVGASRVRDLFKKAKENAPCIV 327 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~--pfi~vs~sefve~~---------------vg~~~~~vr~lF~~A~~~aP~II 327 (418)
.++++.||+|+|||++++++++.... ..+.+ .+-.+.. .+...-...+++..+....|.+|
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~~~iv~i--ed~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~i 222 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKDERIITI--EDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRI 222 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCccccEEEE--cCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeE
Confidence 47999999999999999999987632 22222 1111110 01112346778888888999999
Q ss_pred EEcCCc
Q 014798 328 FVDEID 333 (418)
Q Consensus 328 fIDEID 333 (418)
++||+-
T Consensus 223 i~gE~r 228 (308)
T TIGR02788 223 ILGELR 228 (308)
T ss_pred EEeccC
Confidence 999984
No 352
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0013 Score=74.15 Aligned_cols=148 Identities=24% Similarity=0.343 Sum_probs=96.2
Q ss_pred cccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhc----------CCCeeeeehhh
Q 014798 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISGSE 299 (418)
Q Consensus 230 f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el----------~~pfi~vs~se 299 (418)
.+-+.|. .-++++.+++-|.... .++-+|+|.||+|||.++.-+|+.. +..++.++...
T Consensus 185 ldPvigr--~deeirRvi~iL~Rrt---------k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~ 253 (898)
T KOG1051|consen 185 LDPVIGR--HDEEIRRVIEILSRKT---------KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGS 253 (898)
T ss_pred CCCccCC--chHHHHHHHHHHhccC---------CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhh
Confidence 4566666 2233444455444443 2478999999999999999999865 34566676655
Q ss_pred HH--HHhhhcchhHHHHHHHHHH-hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014798 300 FV--EMFVGVGASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (418)
Q Consensus 300 fv--e~~vg~~~~~vr~lF~~A~-~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatT 376 (418)
++ .++-|+.+.+++++...+. .....|+||||++-+...... .......+ +|..+-. +.++.+|+||
T Consensus 254 l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~------~~~~d~~n-lLkp~L~---rg~l~~IGat 323 (898)
T KOG1051|consen 254 LVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN------YGAIDAAN-LLKPLLA---RGGLWCIGAT 323 (898)
T ss_pred cccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc------chHHHHHH-hhHHHHh---cCCeEEEecc
Confidence 43 3456777889999998887 445679999999998754322 11222333 3333322 3348888877
Q ss_pred CC-----CCCcchhhhCCCccceEEEecCch
Q 014798 377 NR-----ADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 377 N~-----~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
.. --.-||++-| ||+.+. + +.|
T Consensus 324 T~e~Y~k~iekdPalEr--rw~l~~-v-~~p 350 (898)
T KOG1051|consen 324 TLETYRKCIEKDPALER--RWQLVL-V-PIP 350 (898)
T ss_pred cHHHHHHHHhhCcchhh--CcceeE-e-ccC
Confidence 62 2245899999 998654 6 677
No 353
>PRK10536 hypothetical protein; Provisional
Probab=97.39 E-value=0.00057 Score=67.08 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=32.0
Q ss_pred cccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHh
Q 014798 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (418)
Q Consensus 228 ~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~e 287 (418)
..+..+.+.......+...+. +.+ -+++.||+|||||+||.++|.+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~---~~~-----------lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIE---SKQ-----------LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHHHHh---cCC-----------eEEEECCCCCCHHHHHHHHHHH
Confidence 344445566666665555443 222 5899999999999999999875
No 354
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.38 E-value=0.0007 Score=67.45 Aligned_cols=56 Identities=20% Similarity=0.310 Sum_probs=38.5
Q ss_pred HHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcc
Q 014798 315 LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (418)
Q Consensus 315 lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD 383 (418)
.+..|..+.|.++|+||-. ++-+....+.+.+++..+.. ..+..|+.+|+.++.+.
T Consensus 146 ~ia~aL~~~P~lliLDEPt----------~GLDp~~~~~~~~~l~~l~~---~g~~tvlissH~l~e~~ 201 (293)
T COG1131 146 SIALALLHDPELLILDEPT----------SGLDPESRREIWELLRELAK---EGGVTILLSTHILEEAE 201 (293)
T ss_pred HHHHHHhcCCCEEEECCCC----------cCCCHHHHHHHHHHHHHHHh---CCCcEEEEeCCcHHHHH
Confidence 3444555789999999952 34566777777777777752 23378899998776543
No 355
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.38 E-value=0.00083 Score=72.45 Aligned_cols=66 Identities=18% Similarity=0.241 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCC
Q 014798 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPG 390 (418)
Q Consensus 311 ~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpG 390 (418)
+.|-.+..|.-+.|.|+++||..+- -+.+.+..+.+.+..+. .+..+|..|++++. ++
T Consensus 486 rQRi~LARall~~~~ililDEptsa----------LD~~t~~~i~~~l~~~~-----~~~tvI~VtHr~~~-----~~-- 543 (582)
T PRK11176 486 RQRIAIARALLRDSPILILDEATSA----------LDTESERAIQAALDELQ-----KNRTSLVIAHRLST-----IE-- 543 (582)
T ss_pred HHHHHHHHHHHhCCCEEEEECcccc----------CCHHHHHHHHHHHHHHh-----CCCEEEEEecchHH-----HH--
Confidence 3444455555567889999997554 35555666666665542 23467777787643 33
Q ss_pred ccceEEEe
Q 014798 391 RFDRQVKH 398 (418)
Q Consensus 391 RFdr~I~v 398 (418)
.+|+.+.+
T Consensus 544 ~~D~Ii~l 551 (582)
T PRK11176 544 KADEILVV 551 (582)
T ss_pred hCCEEEEE
Confidence 56666655
No 356
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.37 E-value=0.00081 Score=65.19 Aligned_cols=57 Identities=26% Similarity=0.409 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 311 ~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
+-|..++.|....|.|||+||-. +|.++.....+++|+..+..- -+..+|.-|+..+
T Consensus 151 ~KRvaLARAialdPell~~DEPt----------sGLDPI~a~~~~~LI~~L~~~---lg~T~i~VTHDl~ 207 (263)
T COG1127 151 RKRVALARAIALDPELLFLDEPT----------SGLDPISAGVIDELIRELNDA---LGLTVIMVTHDLD 207 (263)
T ss_pred HHHHHHHHHHhcCCCEEEecCCC----------CCCCcchHHHHHHHHHHHHHh---hCCEEEEEECChH
Confidence 44556777777889999999953 345666777888888877532 2355666776444
No 357
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.37 E-value=0.00063 Score=62.55 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=59.6
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH-HHhhh----------------cchhHHHHHHHHHHhCCCeEEE
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV-EMFVG----------------VGASRVRDLFKKAKENAPCIVF 328 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv-e~~vg----------------~~~~~vr~lF~~A~~~aP~IIf 328 (418)
-+++.||||+|||++|..++.+.+.+++++...... +.+.. +....+.++++.. ...+.+|+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 379999999999999999999988887777644321 11000 0111233333321 13356899
Q ss_pred EcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 329 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 329 IDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
||-+..+....-.. ...+.....+.+++..+... +.-+|.++|
T Consensus 82 ID~Lt~~~~n~l~~--~~~~~~~~~l~~li~~L~~~----~~tvVlVs~ 124 (170)
T PRK05800 82 VDCLTTWVTNLLFE--EGEEAIAAEIDALLAALQQL----PAKIILVTN 124 (170)
T ss_pred ehhHHHHHHHHhcc--cchHHHHHHHHHHHHHHHcC----CCCEEEEEc
Confidence 99998886543210 00122234556666666532 223455555
No 358
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.37 E-value=0.00026 Score=71.58 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=46.4
Q ss_pred CCceEECCCCChHHHHHHHHHHhc-----CCCeeeee-hhhHHH---H---hhhcchhHHHHHHHHHHhCCCeEEEEcCC
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSIS-GSEFVE---M---FVGVGASRVRDLFKKAKENAPCIVFVDEI 332 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~vs-~sefve---~---~vg~~~~~vr~lF~~A~~~aP~IIfIDEI 332 (418)
++++++|++|+|||+++++++.+. +..++.+. ..++.- . +.....-...+++..+....|+.|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 379999999999999999998875 22333332 112110 0 01112234678888888899999999998
Q ss_pred c
Q 014798 333 D 333 (418)
Q Consensus 333 D 333 (418)
-
T Consensus 225 R 225 (323)
T PRK13833 225 R 225 (323)
T ss_pred C
Confidence 3
No 359
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.36 E-value=0.00082 Score=61.81 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=61.3
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH-----HHH---h---------hhcchhHHHHHHHHHHhCCCeEEEE
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF-----VEM---F---------VGVGASRVRDLFKKAKENAPCIVFV 329 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef-----ve~---~---------vg~~~~~vr~lF~~A~~~aP~IIfI 329 (418)
+|+.|++|+|||++|..++.+.+.+.+++....- .+. . ..+....+.+.++... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 5899999999999999999887778877754421 111 0 0112233444443222 4679999
Q ss_pred cCCcccccccCCCCCCC-ChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014798 330 DEIDAVGRQRGTGIGGG-NDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (418)
Q Consensus 330 DEIDal~~~r~~~~~~~-~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~ 378 (418)
|-+..+....-....+. .+.....+..|+..+.. .+.-+|.++|.
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~----~~~~~viVsnE 125 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN----KPGTLILVSNE 125 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc----CCCcEEEEECC
Confidence 99988765442210000 02223455666666653 23345666773
No 360
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.36 E-value=0.0013 Score=61.13 Aligned_cols=101 Identities=23% Similarity=0.297 Sum_probs=60.0
Q ss_pred CceEECCCCChHHHHHHHHHHhc--CC----------C---------eeee----------ehhhHHHHh----hhcchh
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA--GV----------P---------FFSI----------SGSEFVEMF----VGVGAS 310 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el--~~----------p---------fi~v----------s~sefve~~----vg~~~~ 310 (418)
.+.|.||+|+|||+|++.+|+.. .. + +.++ +..+..... .-.+..
T Consensus 37 ~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~~LS~G~ 116 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGLSGGE 116 (194)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhccCCHHH
Confidence 58899999999999999999976 21 0 0011 000000000 001223
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 311 ~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
+.|-.+..|....|.++++||-.+- -+....+.+.+++.++.. .+..+|.+|+.++
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~----------LD~~~~~~l~~~l~~~~~----~~~tiii~sh~~~ 172 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSG----------LDSSSALQVMSLLRRLAD----TGRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcC----------CCHHHHHHHHHHHHHHHh----CCCEEEEEecCch
Confidence 3444556666778999999997543 355556666677766532 2456777777654
No 361
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.36 E-value=0.0021 Score=67.27 Aligned_cols=115 Identities=16% Similarity=0.274 Sum_probs=62.6
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc----CCCeeeeehhhHH-------HHh---hhc---chhHHHHHHHHHHhCCCeE
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFV-------EMF---VGV---GASRVRDLFKKAKENAPCI 326 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el----~~pfi~vs~sefv-------e~~---vg~---~~~~vr~lF~~A~~~aP~I 326 (418)
+.-++++||+|+|||+++..+|.++ +..+..+++..+. ..| .+. ......++.+.+.....++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4458899999999999999998754 4445555544321 112 111 1222444455554456678
Q ss_pred EEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhh
Q 014798 327 VFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALL 387 (418)
Q Consensus 327 IfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALl 387 (418)
|+||=.... ..+...-..+..++...........++|+.+|...+.+.....
T Consensus 303 VLIDTaGr~---------~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 303 ILIDTAGYS---------HRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred EEEeCCCCC---------ccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 998863221 1122222233333333322223345777777777766665554
No 362
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.36 E-value=0.00063 Score=71.88 Aligned_cols=83 Identities=19% Similarity=0.171 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCC
Q 014798 310 SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRP 389 (418)
Q Consensus 310 ~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRp 389 (418)
.+.|--+..|.-..|.++++||-++ +-+.+.|+.+..-+.++. ..+.++|..|+||..|.
T Consensus 477 QRQRIaLARAlYG~P~lvVLDEPNs----------NLD~~GE~AL~~Ai~~~k----~rG~~vvviaHRPs~L~------ 536 (580)
T COG4618 477 QRQRIALARALYGDPFLVVLDEPNS----------NLDSEGEAALAAAILAAK----ARGGTVVVIAHRPSALA------ 536 (580)
T ss_pred HHHHHHHHHHHcCCCcEEEecCCCC----------CcchhHHHHHHHHHHHHH----HcCCEEEEEecCHHHHh------
Confidence 4455555666668899999999654 346677888777777665 45678888899887542
Q ss_pred CccceEEEecCch------HHHHHHHHhhcc
Q 014798 390 GRFDRQVKHVSLS------LMLWFLKTHSQY 414 (418)
Q Consensus 390 GRFdr~I~v~~lP------~R~~IL~~~l~~ 414 (418)
-.|+.+.+ .-= .|.+++...++.
T Consensus 537 -~~Dkilvl-~~G~~~~FG~r~eVLa~~~~~ 565 (580)
T COG4618 537 -SVDKILVL-QDGRIAAFGPREEVLAKVLRP 565 (580)
T ss_pred -hcceeeee-cCChHHhcCCHHHHHHHhcCC
Confidence 23444433 111 588888877764
No 363
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.36 E-value=0.0004 Score=64.12 Aligned_cols=32 Identities=28% Similarity=0.606 Sum_probs=29.1
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeeee
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs 296 (418)
..++|+|++|+|||++.+++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 36999999999999999999999999998654
No 364
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.36 E-value=0.0012 Score=63.94 Aligned_cols=91 Identities=25% Similarity=0.411 Sum_probs=55.4
Q ss_pred CceEECCCCChHHHHHHHHHHhc--------CCCeeeeehh-hHHHHhhhc-------------chhHHHHHHHHHHhCC
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISGS-EFVEMFVGV-------------GASRVRDLFKKAKENA 323 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el--------~~pfi~vs~s-efve~~vg~-------------~~~~vr~lF~~A~~~a 323 (418)
+.|+.||||||||++.|-+|.-+ ...+..++-+ +...-..|. ....-..+....+.++
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~ 218 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMS 218 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcC
Confidence 58899999999999999998754 2233344332 222211111 1112234555667889
Q ss_pred CeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 324 P~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
|.||++|||..-. -...+++.+ +.+|-+|.|++
T Consensus 219 PEViIvDEIGt~~----------------d~~A~~ta~-----~~GVkli~TaH 251 (308)
T COG3854 219 PEVIIVDEIGTEE----------------DALAILTAL-----HAGVKLITTAH 251 (308)
T ss_pred CcEEEEeccccHH----------------HHHHHHHHH-----hcCcEEEEeec
Confidence 9999999994431 122333333 35788888886
No 365
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.35 E-value=0.00058 Score=75.56 Aligned_cols=32 Identities=38% Similarity=0.580 Sum_probs=24.9
Q ss_pred hhcCCccCCC--ceEECCCCChHHHHHHHHHHhc
Q 014798 257 TAIGARIPKG--VLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 257 ~~lG~~~p~g--VLL~GPPGTGKT~LArAIA~el 288 (418)
+.+....++| +.++||+|+|||||++.+++.+
T Consensus 496 ~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~ 529 (710)
T TIGR03796 496 ENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529 (710)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3344444444 9999999999999999999854
No 366
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.34 E-value=0.0011 Score=64.12 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=29.0
Q ss_pred ceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHH
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve 302 (418)
|+|+|+||+|||++|+++|..+ +.+++.++...+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 6899999999999999999877 56677776654433
No 367
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.34 E-value=0.00091 Score=62.52 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=19.0
Q ss_pred CceEECCCCChHHHHHHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIA 285 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA 285 (418)
.++|+||.|+|||+|.|.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 49999999999999999998
No 368
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.34 E-value=8.4e-05 Score=68.25 Aligned_cols=22 Identities=45% Similarity=0.860 Sum_probs=19.7
Q ss_pred ceEECCCCChHHHHHHHHHHhc
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el 288 (418)
++|+|+||+||||+++.++.++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7999999999999999998877
No 369
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.33 E-value=0.0011 Score=70.86 Aligned_cols=32 Identities=38% Similarity=0.688 Sum_probs=24.4
Q ss_pred hhcCCccCCC--ceEECCCCChHHHHHHHHHHhc
Q 014798 257 TAIGARIPKG--VLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 257 ~~lG~~~p~g--VLL~GPPGTGKT~LArAIA~el 288 (418)
+.+....++| +.|+||+|+|||+|++.+++..
T Consensus 339 ~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~ 372 (529)
T TIGR02857 339 RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV 372 (529)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3334444434 8999999999999999999844
No 370
>PRK13949 shikimate kinase; Provisional
Probab=97.33 E-value=0.00033 Score=64.17 Aligned_cols=31 Identities=45% Similarity=0.732 Sum_probs=28.8
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs 296 (418)
.++|+|+||+|||++++.+|+.++.+++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999988765
No 371
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.32 E-value=0.0011 Score=61.24 Aligned_cols=19 Identities=26% Similarity=0.572 Sum_probs=18.0
Q ss_pred ceEECCCCChHHHHHHHHH
Q 014798 267 VLLVGPPGTGKTLLAKAIA 285 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA 285 (418)
++|+||.|+|||+++|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999997
No 372
>PRK00625 shikimate kinase; Provisional
Probab=97.32 E-value=0.00016 Score=66.65 Aligned_cols=31 Identities=39% Similarity=0.650 Sum_probs=28.5
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs 296 (418)
.++|+|.||+|||++++.+|++++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999987764
No 373
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.32 E-value=0.00022 Score=67.05 Aligned_cols=126 Identities=26% Similarity=0.364 Sum_probs=67.2
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhh-------HHHHh---hhc----------chhHHHHHHHHHH
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE-------FVEMF---VGV----------GASRVRDLFKKAK 320 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~se-------fve~~---vg~----------~~~~vr~lF~~A~ 320 (418)
|+-++|+||+|+|||+.+-.+|.++ +..+-.+++.. ....| .+. .....++.++.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 5568999999999999998888755 44444343332 22222 111 1123445566665
Q ss_pred hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhh--CCCccceEEEe
Q 014798 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALL--RPGRFDRQVKH 398 (418)
Q Consensus 321 ~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALl--RpGRFdr~I~v 398 (418)
...-.+|+||-.... ..+.+....+.+++..+ ...+-.+|+.++-..+.++.+.. +...++..|.-
T Consensus 81 ~~~~D~vlIDT~Gr~---------~~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlT 148 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS---------PRDEELLEELKKLLEAL---NPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILT 148 (196)
T ss_dssp HTTSSEEEEEE-SSS---------STHHHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEE
T ss_pred hcCCCEEEEecCCcc---------hhhHHHHHHHHHHhhhc---CCccceEEEecccChHHHHHHHHHhhcccCceEEEE
Confidence 555679999875322 12233344555555555 23333555566656666664433 22234555544
Q ss_pred cCch
Q 014798 399 VSLS 402 (418)
Q Consensus 399 ~~lP 402 (418)
.+-
T Consensus 149 -KlD 151 (196)
T PF00448_consen 149 -KLD 151 (196)
T ss_dssp -STT
T ss_pred -eec
Confidence 444
No 374
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=0.0017 Score=60.23 Aligned_cols=101 Identities=21% Similarity=0.292 Sum_probs=60.3
Q ss_pred CceEECCCCChHHHHHHHHHHhcC----CCeeeeeh--------------------------hhHHHH--h--hhcchhH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISG--------------------------SEFVEM--F--VGVGASR 311 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~----~pfi~vs~--------------------------sefve~--~--vg~~~~~ 311 (418)
-+.|.||+|+|||+|++.+++... .--+.+++ .+.... . .-.+..+
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~LSgGe~ 114 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQR 114 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcCCHHHh
Confidence 488999999999999999997421 00011111 111100 0 0011233
Q ss_pred HHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCC
Q 014798 312 VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (418)
Q Consensus 312 vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~ 380 (418)
.|-.+..|....|.++++||-.+- -+....+.+.+++.++.. .+..+|.+|+.++
T Consensus 115 qrv~la~al~~~p~vlllDEP~~~----------LD~~~~~~l~~~l~~~~~----~~~tiiivtH~~~ 169 (192)
T cd03232 115 KRLTIGVELAAKPSILFLDEPTSG----------LDSQAAYNIVRFLKKLAD----SGQAILCTIHQPS 169 (192)
T ss_pred HHHHHHHHHhcCCcEEEEeCCCcC----------CCHHHHHHHHHHHHHHHH----cCCEEEEEEcCCh
Confidence 444556666778999999997553 355666677777777642 2456777777654
No 375
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.32 E-value=0.0002 Score=65.39 Aligned_cols=38 Identities=24% Similarity=0.461 Sum_probs=32.4
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~ 303 (418)
-++|.|+||+|||++|++++.+++.+++.++...+...
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~ 41 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA 41 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence 58999999999999999999999888887776666543
No 376
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.31 E-value=0.00069 Score=68.00 Aligned_cols=117 Identities=22% Similarity=0.213 Sum_probs=64.9
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHhc---------CCCeeeeehhhH------HHHh--hhcch-------------
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF------VEMF--VGVGA------------- 309 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~vs~sef------ve~~--vg~~~------------- 309 (418)
|.+...-++|+||||||||.++-.+|-.+ +...++++..+- .+.. .|...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 34444558899999999999999887553 336777776541 1110 01000
Q ss_pred ------hHHHHHHHHHHh-CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 310 ------SRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 310 ------~~vr~lF~~A~~-~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
..+..+...... ..+.+|+||-|-++.+....+. +...++++.+.+++..+..+....++.+|.|..
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavl~tnq 251 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGR-GNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 251 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEece
Confidence 001112222223 4667999999998865421111 122344555666666554444445667777654
No 377
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.31 E-value=0.0023 Score=59.37 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.9
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||+|+|||+|++++++..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999864
No 378
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.31 E-value=0.00089 Score=74.72 Aligned_cols=114 Identities=22% Similarity=0.258 Sum_probs=64.5
Q ss_pred CCCceEECCCCChHHHHHHHHHH---hcCCCeeeeehhhHHH-H---hhhc-----------chhHHHHHHH-HHHhCCC
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFVE-M---FVGV-----------GASRVRDLFK-KAKENAP 324 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~---el~~pfi~vs~sefve-~---~vg~-----------~~~~vr~lF~-~A~~~aP 324 (418)
..-++++||||||||+|+-.++. ..+...++++..+-.+ . -.|. .....-.+.+ ..+...+
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~ 139 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGAL 139 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCC
Confidence 34588999999999999965533 3466777777654222 0 0111 1111111122 2334578
Q ss_pred eEEEEcCCccccc-ccCCCCCCCC--hHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 325 CIVFVDEIDAVGR-QRGTGIGGGN--DEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 325 ~IIfIDEIDal~~-~r~~~~~~~~--~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
.+|+||-+.++.+ ..-.+..+.. ...++.++++|..|..+-...++.+|+|-.
T Consensus 140 ~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQ 195 (790)
T PRK09519 140 DIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINQ 195 (790)
T ss_pred eEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 9999999999985 2222221111 223344466666666555556677777643
No 379
>PRK14527 adenylate kinase; Provisional
Probab=97.30 E-value=0.0011 Score=61.41 Aligned_cols=32 Identities=41% Similarity=0.641 Sum_probs=27.4
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
|.-++++||||+|||++|+.+|.+++.+.+..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 45699999999999999999999998765543
No 380
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.30 E-value=0.00032 Score=70.81 Aligned_cols=69 Identities=29% Similarity=0.421 Sum_probs=46.1
Q ss_pred CCceEECCCCChHHHHHHHHHHhc-----CCCeeeee-hhhHH---HHhh---hcchhHHHHHHHHHHhCCCeEEEEcCC
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSIS-GSEFV---EMFV---GVGASRVRDLFKKAKENAPCIVFVDEI 332 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~vs-~sefv---e~~v---g~~~~~vr~lF~~A~~~aP~IIfIDEI 332 (418)
++++++|++|+|||+++++++.+. ...++.+. ..++. +.++ ........++++.+....|+.|++.|+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 379999999999999999999863 12222221 11110 0011 112335678899999999999999998
Q ss_pred c
Q 014798 333 D 333 (418)
Q Consensus 333 D 333 (418)
-
T Consensus 229 R 229 (319)
T PRK13894 229 R 229 (319)
T ss_pred C
Confidence 4
No 381
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.0021 Score=66.80 Aligned_cols=71 Identities=18% Similarity=0.201 Sum_probs=45.4
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhH----HHH---h---------hhcchhHHHHHHHHHHh-CC
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF----VEM---F---------VGVGASRVRDLFKKAKE-NA 323 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sef----ve~---~---------vg~~~~~vr~lF~~A~~-~a 323 (418)
|+-++|+||+|+|||+++..+|.++ +..+..+++..+ .+. | +......+.+.+..+.. ..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 5679999999999999999999766 444555554322 122 1 11234455566655543 23
Q ss_pred CeEEEEcCCcc
Q 014798 324 PCIVFVDEIDA 334 (418)
Q Consensus 324 P~IIfIDEIDa 334 (418)
.++||||-...
T Consensus 321 ~DvVLIDTaGR 331 (436)
T PRK11889 321 VDYILIDTAGK 331 (436)
T ss_pred CCEEEEeCccc
Confidence 57999987633
No 382
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.30 E-value=0.00065 Score=68.46 Aligned_cols=112 Identities=23% Similarity=0.245 Sum_probs=63.0
Q ss_pred CCCceEECCCCChHHHHHHHHHHh---------cCCCeeeeehhh-H-HHHh------hhcc---------------h--
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGE---------AGVPFFSISGSE-F-VEMF------VGVG---------------A-- 309 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~e---------l~~pfi~vs~se-f-ve~~------vg~~---------------~-- 309 (418)
..-+.|+||||||||.|+..+|-. .+...++++..+ | .+.+ .+.. .
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~~e~ 175 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYTSEH 175 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCCHHH
Confidence 344789999999999999877632 245677776544 1 1110 0110 1
Q ss_pred --hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014798 310 --SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (418)
Q Consensus 310 --~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatT 376 (418)
..+..+........+.+|+||-|-++.+....+. +...++++.+.+++..+..+....++.|+.+.
T Consensus 176 ~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~~-g~~~~r~~~l~~~~~~L~~la~~~~vavvitN 243 (313)
T TIGR02238 176 QMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGR-GELSERQQKLAQMLSRLNKISEEFNVAVFVTN 243 (313)
T ss_pred HHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccCc-cchHHHHHHHHHHHHHHHHHHHHcCcEEEEEC
Confidence 1112222222345688999999998876432221 12234455566766666555445556666654
No 383
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.29 E-value=0.00087 Score=62.99 Aligned_cols=48 Identities=23% Similarity=0.456 Sum_probs=32.4
Q ss_pred hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 321 ~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
...|.++++||-.+ +-+......+.+++.++.. ..+..||.+|+..+.
T Consensus 156 ~~~p~lllLDEP~~----------~LD~~~~~~l~~~l~~~~~---~~~~tii~~sH~~~~ 203 (218)
T cd03255 156 ANDPKIILADEPTG----------NLDSETGKEVMELLRELNK---EAGTTIVVVTHDPEL 203 (218)
T ss_pred ccCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHHHH---hcCCeEEEEECCHHH
Confidence 35689999999644 3455666777777777632 124578888887654
No 384
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.28 E-value=0.00085 Score=62.64 Aligned_cols=102 Identities=23% Similarity=0.346 Sum_probs=60.8
Q ss_pred CceEECCCCChHHHHHHHHHHhcC----CCeeeeehhh-------------------------------HHHHhhh--cc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISGSE-------------------------------FVEMFVG--VG 308 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~----~pfi~vs~se-------------------------------fve~~vg--~~ 308 (418)
.+.|.||+|+|||+|++++++... .--+.+++.+ +...+.. .+
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~~~~LS~ 107 (200)
T cd03217 28 VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYVNEGFSG 107 (200)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhccccCCH
Confidence 588999999999999999999721 0001111110 0001100 12
Q ss_pred hhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 309 ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 309 ~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
..+.|-.+..+....|.++++||-.. +-+....+.+.++|.++.. .+..+|.+|+.++.
T Consensus 108 G~~qrv~laral~~~p~illlDEPt~----------~LD~~~~~~l~~~L~~~~~----~~~tiii~sh~~~~ 166 (200)
T cd03217 108 GEKKRNEILQLLLLEPDLAILDEPDS----------GLDIDALRLVAEVINKLRE----EGKSVLIITHYQRL 166 (200)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHHHH----CCCEEEEEecCHHH
Confidence 23344556666677899999999643 2355566677777777632 23466777776553
No 385
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.28 E-value=0.00072 Score=64.70 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=36.0
Q ss_pred chhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCC
Q 014798 308 GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (418)
Q Consensus 308 ~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~ 378 (418)
|....|-.++.|....|.|+++||.-+.. ++|.-..+...+..+. .++..+|..|+.
T Consensus 139 GGQqQRVAIARALaM~P~vmLFDEPTSAL----------DPElv~EVL~vm~~LA----~eGmTMivVTHE 195 (240)
T COG1126 139 GGQQQRVAIARALAMDPKVMLFDEPTSAL----------DPELVGEVLDVMKDLA----EEGMTMIIVTHE 195 (240)
T ss_pred cHHHHHHHHHHHHcCCCCEEeecCCcccC----------CHHHHHHHHHHHHHHH----HcCCeEEEEech
Confidence 33455566667777889999999976543 5554444444444443 356777888873
No 386
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.28 E-value=0.00078 Score=63.91 Aligned_cols=49 Identities=20% Similarity=0.272 Sum_probs=33.0
Q ss_pred HHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 319 A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
|....|.++++||-.+ +-+.+....+.+++.++.. .+..+|.+|+.++.
T Consensus 147 al~~~p~llllDEPt~----------~LD~~~~~~~~~~l~~~~~----~~~tii~~sH~~~~ 195 (232)
T cd03218 147 ALATNPKFLLLDEPFA----------GVDPIAVQDIQKIIKILKD----RGIGVLITDHNVRE 195 (232)
T ss_pred HHhcCCCEEEecCCcc----------cCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHH
Confidence 3345689999999644 3456666777778877642 24568888886653
No 387
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00054 Score=61.98 Aligned_cols=34 Identities=41% Similarity=0.827 Sum_probs=29.6
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv 301 (418)
++|++|-||||||+++..||...+.+++.+ ++++
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~i--sd~v 42 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEI--SDLV 42 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEeh--hhHH
Confidence 699999999999999999999999887765 4554
No 388
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.27 E-value=0.0018 Score=63.37 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=28.7
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHh---cCCCeeeeehh
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS 298 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~vs~s 298 (418)
|.+....++++||||||||+++..+|.+ .+-+.++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 3344455899999999999999987653 36677777654
No 389
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.27 E-value=0.00032 Score=73.96 Aligned_cols=155 Identities=25% Similarity=0.282 Sum_probs=75.2
Q ss_pred ccCchHHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeee-ehhhHHHHhhhcchhH
Q 014798 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI-SGSEFVEMFVGVGASR 311 (418)
Q Consensus 233 V~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~v-s~sefve~~vg~~~~~ 311 (418)
|.|.+++|+.+.=++-.-.....-..+-.+.--+|||.|.|||.|+-|.|-+-.-.-.-+|.- .+|. -.|.+++.
T Consensus 333 IfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSS----AAGLTASV 408 (729)
T KOG0481|consen 333 IFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSS----AAGLTASV 408 (729)
T ss_pred hcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcc----cccceeeE
Confidence 456666665543322211111111122223334699999999999999999876543333221 0110 01111111
Q ss_pred HHHH-----HHH--HH-hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEEeCCC--
Q 014798 312 VRDL-----FKK--AK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--GNTGIIVIAATNRA-- 379 (418)
Q Consensus 312 vr~l-----F~~--A~-~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~--~~~~ViVIatTN~~-- 379 (418)
+|+- +-+ |. -..-.|++|||+|++-.. +.-.-|+..+|..-.+-. .|.. .|.+.-|+||+|.+
T Consensus 409 ~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~---DRVAIHEAMEQQTISIAK--AGITT~LNSRtSVLAAANpvfG 483 (729)
T KOG0481|consen 409 IRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRED---DRVAIHEAMEQQTISIAK--AGITTTLNSRTSVLAAANPVFG 483 (729)
T ss_pred EecCCcceEEEecceEEEecCCEEEeehhhccCch---hhhHHHHHHHhhhHHHhh--hcceeeecchhhhhhhcCCccc
Confidence 1110 000 00 012359999999998321 111112222221111111 2222 25667899999943
Q ss_pred --C---------CcchhhhCCCccceEEEe
Q 014798 380 --D---------ILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 380 --~---------~LD~ALlRpGRFdr~I~v 398 (418)
| ++-+.+++ |||..+.+
T Consensus 484 RyDd~Kt~~dNIDf~~TILS--RFDmIFIV 511 (729)
T KOG0481|consen 484 RYDDTKTGEDNIDFMPTILS--RFDMIFIV 511 (729)
T ss_pred cccccCCcccccchhhhHhh--hccEEEEE
Confidence 2 24567888 99998877
No 390
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.26 E-value=0.0014 Score=68.90 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=29.8
Q ss_pred ccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhh
Q 014798 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (418)
Q Consensus 262 ~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~se 299 (418)
..|..++++|++|+|||+++..+|..+ +..+..+++..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 346789999999999999999998766 55666665543
No 391
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.26 E-value=0.0011 Score=60.07 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=19.0
Q ss_pred CCceEECCCCChHHHHHHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIA 285 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA 285 (418)
+..+++||.|+|||++.++++
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999984
No 392
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.26 E-value=0.0009 Score=66.77 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=63.3
Q ss_pred CccCCCceEECCCCChHHHHHHHHHHhc---------CCCeeeeehhh-H-----HHHh--hhcch--------------
Q 014798 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE-F-----VEMF--VGVGA-------------- 309 (418)
Q Consensus 261 ~~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~vs~se-f-----ve~~--vg~~~-------------- 309 (418)
.+...-++++||||||||+++-.+|-.+ +...++|+..+ | .+.. .+...
T Consensus 92 i~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~~ 171 (310)
T TIGR02236 92 IETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAYN 171 (310)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecCC
Confidence 3334457899999999999999887653 33677777654 1 1110 01100
Q ss_pred --h---HHHHHHHHHHhC--CCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 310 --S---RVRDLFKKAKEN--APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 310 --~---~vr~lF~~A~~~--aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
. .+.++.+..... .+.+|+||-|-++.+....+. +...++++.+.+++..+..+....++.|+.+..
T Consensus 172 ~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~-~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tnq 245 (310)
T TIGR02236 172 SNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGR-GALAERQQKLNKHLHDLLRLADLYNAAVVVTNQ 245 (310)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHhCcEEEEece
Confidence 0 112222223333 367999999988754422111 112334455666666555444445566666643
No 393
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.26 E-value=0.0012 Score=72.90 Aligned_cols=65 Identities=22% Similarity=0.309 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCC
Q 014798 310 SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRP 389 (418)
Q Consensus 310 ~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRp 389 (418)
++.|-.+..|.-+.|.|+++||.-+- -+.+.++.+.+.+..++ ..+|..|++++.+ +
T Consensus 593 QrQRialARAll~~p~iLiLDEpTS~----------LD~~te~~i~~~L~~~~-------~T~IiItHr~~~i-----~- 649 (686)
T TIGR03797 593 QRQRLLIARALVRKPRILLFDEATSA----------LDNRTQAIVSESLERLK-------VTRIVIAHRLSTI-----R- 649 (686)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHhC-------CeEEEEecChHHH-----H-
Confidence 34455555666678899999997543 35556666666665541 2677888876433 3
Q ss_pred CccceEEEe
Q 014798 390 GRFDRQVKH 398 (418)
Q Consensus 390 GRFdr~I~v 398 (418)
.+|+.+.+
T Consensus 650 -~~D~Iivl 657 (686)
T TIGR03797 650 -NADRIYVL 657 (686)
T ss_pred -cCCEEEEE
Confidence 45665544
No 394
>PRK14532 adenylate kinase; Provisional
Probab=97.24 E-value=0.00023 Score=65.43 Aligned_cols=34 Identities=32% Similarity=0.602 Sum_probs=27.9
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv 301 (418)
.++|.||||+|||++|+.+|.+++.+++. ..+++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is--~~d~l 35 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS--TGDML 35 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe--CcHHH
Confidence 38999999999999999999999876654 44443
No 395
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.23 E-value=0.00026 Score=61.64 Aligned_cols=30 Identities=33% Similarity=0.757 Sum_probs=27.8
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeeee
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~vs 296 (418)
+.+.|+||||||++|+.+|.+++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 679999999999999999999999998765
No 396
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.23 E-value=0.001 Score=59.47 Aligned_cols=36 Identities=28% Similarity=0.627 Sum_probs=30.3
Q ss_pred ceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHH
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve 302 (418)
++|+|+||+|||++|+.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6899999999999999999988 66777777766654
No 397
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.22 E-value=0.0013 Score=67.80 Aligned_cols=69 Identities=26% Similarity=0.358 Sum_probs=45.7
Q ss_pred CceEECCCCChHHHHHHHHHHhcC-----CCeeeeeh-hhHH-----------HHhhhcchhHHHHHHHHHHhCCCeEEE
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSISG-SEFV-----------EMFVGVGASRVRDLFKKAKENAPCIVF 328 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~-----~pfi~vs~-sefv-----------e~~vg~~~~~vr~lF~~A~~~aP~IIf 328 (418)
.++++||+|+|||+++++++.+.. ..++.+.- .++. ..-+|.......+.+..+....|++|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 488999999999999999987762 23444321 1211 011222223455677778888999999
Q ss_pred EcCCcc
Q 014798 329 VDEIDA 334 (418)
Q Consensus 329 IDEIDa 334 (418)
+.|+..
T Consensus 231 vGEiRd 236 (372)
T TIGR02525 231 VGEIRD 236 (372)
T ss_pred eCCCCC
Confidence 999843
No 398
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.22 E-value=0.0036 Score=63.29 Aligned_cols=114 Identities=23% Similarity=0.308 Sum_probs=62.4
Q ss_pred cCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhH-------HHHh---hh----------cchhHHHHHHHHH
Q 014798 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF-------VEMF---VG----------VGASRVRDLFKKA 319 (418)
Q Consensus 263 ~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sef-------ve~~---vg----------~~~~~vr~lF~~A 319 (418)
.|.-++|+||+|+|||+++..+|..+ +..+..+++.-+ ...| .+ .....+.+.+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45568899999999999999998866 445555554322 1111 00 0112334445555
Q ss_pred HhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhc---CCCCCCCeEEEEEeCCCCCcchh
Q 014798 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD---GFEGNTGIIVIAATNRADILDSA 385 (418)
Q Consensus 320 ~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emd---g~~~~~~ViVIatTN~~~~LD~A 385 (418)
......+|+||=.-.+. .++.....+..+....+ ...+...++|+-+|...+.+..+
T Consensus 193 ~~~~~D~ViIDTaGr~~---------~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a 252 (318)
T PRK10416 193 KARGIDVLIIDTAGRLH---------NKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQA 252 (318)
T ss_pred HhCCCCEEEEeCCCCCc---------CCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHH
Confidence 56667899988754432 12222233334433332 22233446677776555555544
No 399
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.22 E-value=0.0015 Score=61.06 Aligned_cols=49 Identities=22% Similarity=0.347 Sum_probs=32.3
Q ss_pred HHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 319 A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
|....|.++++||-.+ +-+....+.+.+++.++.. .+..||.+|++++.
T Consensus 142 al~~~p~~lllDEP~~----------~LD~~~~~~~~~~l~~~~~----~~~tii~~sH~~~~ 190 (210)
T cd03269 142 AVIHDPELLILDEPFS----------GLDPVNVELLKDVIRELAR----AGKTVILSTHQMEL 190 (210)
T ss_pred HHhcCCCEEEEeCCCc----------CCCHHHHHHHHHHHHHHHH----CCCEEEEECCCHHH
Confidence 3445688999999644 3355666677777776631 24578888886654
No 400
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.21 E-value=0.0015 Score=70.85 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 310 SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 310 ~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
++.|-.+..|.-+.|.|+++||..+- -+.+.++.+.+.+..+. .+..+|..|++++.
T Consensus 481 qrQRialARaLl~~~~illlDEpts~----------LD~~t~~~i~~~l~~~~-----~~~tvIivtHr~~~ 537 (592)
T PRK10790 481 QKQLLALARVLVQTPQILILDEATAN----------IDSGTEQAIQQALAAVR-----EHTTLVVIAHRLST 537 (592)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHh-----CCCEEEEEecchHH
Confidence 34444455555567889999997543 35566666666666542 12467788887643
No 401
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.21 E-value=0.0014 Score=65.65 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=35.6
Q ss_pred HHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 316 FKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 316 F~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
+..|.-+.|.++++||-.+ +-+......+.+++.++. ..+..||.+|+..+.+
T Consensus 149 la~aL~~~P~lllLDEPt~----------gLD~~~~~~l~~~l~~l~----~~g~till~sH~l~e~ 201 (306)
T PRK13537 149 LARALVNDPDVLVLDEPTT----------GLDPQARHLMWERLRSLL----ARGKTILLTTHFMEEA 201 (306)
T ss_pred HHHHHhCCCCEEEEeCCCc----------CCCHHHHHHHHHHHHHHH----hCCCEEEEECCCHHHH
Confidence 3334456799999999533 446666777788888763 1246788888766543
No 402
>PRK06217 hypothetical protein; Validated
Probab=97.21 E-value=0.00028 Score=65.01 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=27.7
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs 296 (418)
.|+|.|+||+|||++|+++|..++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 3899999999999999999999999877654
No 403
>PRK04328 hypothetical protein; Provisional
Probab=97.21 E-value=0.0027 Score=61.63 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=28.3
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHh---cCCCeeeeehh
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS 298 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~e---l~~pfi~vs~s 298 (418)
|.+....++++||||||||+|+..++.+ .|.+.++++..
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 3434455899999999999998876543 36777777653
No 404
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.21 E-value=0.00052 Score=70.06 Aligned_cols=71 Identities=24% Similarity=0.381 Sum_probs=47.5
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHh---------------hhcchhHHHHHHHHHHhCCCeEEE
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF---------------VGVGASRVRDLFKKAKENAPCIVF 328 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~---------------vg~~~~~vr~lF~~A~~~aP~IIf 328 (418)
.+++++.||+|+|||+++++++++....--.+...+-.|.. .+.+.-...+++..+....|+.|+
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~Ii 241 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRIL 241 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEE
Confidence 35799999999999999999998763321112211111110 112233567888888889999999
Q ss_pred EcCCcc
Q 014798 329 VDEIDA 334 (418)
Q Consensus 329 IDEIDa 334 (418)
+.|+-.
T Consensus 242 vGEiR~ 247 (344)
T PRK13851 242 LGEMRD 247 (344)
T ss_pred EEeeCc
Confidence 999743
No 405
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.20 E-value=0.00066 Score=63.79 Aligned_cols=49 Identities=16% Similarity=0.278 Sum_probs=32.6
Q ss_pred HHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 319 A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
|....|.++++||-.+ +-+....+.+.+++.++.. .+..+|.+|++.+.
T Consensus 150 al~~~p~illlDEPt~----------~LD~~~~~~l~~~l~~~~~----~~~tii~~tH~~~~ 198 (218)
T cd03266 150 ALVHDPPVLLLDEPTT----------GLDVMATRALREFIRQLRA----LGKCILFSTHIMQE 198 (218)
T ss_pred HHhcCCCEEEEcCCCc----------CCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHH
Confidence 3345789999999754 3456666777777777631 24567888876653
No 406
>PTZ00035 Rad51 protein; Provisional
Probab=97.20 E-value=0.0011 Score=67.36 Aligned_cols=115 Identities=22% Similarity=0.264 Sum_probs=63.3
Q ss_pred CccCCCceEECCCCChHHHHHHHHHHhc---------CCCeeeeehhh------HHHHh--hhc---------------c
Q 014798 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE------FVEMF--VGV---------------G 308 (418)
Q Consensus 261 ~~~p~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~vs~se------fve~~--vg~---------------~ 308 (418)
.....-+.|+||||||||+|+..+|... +...++++..+ +.... .+. .
T Consensus 115 i~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 115 IETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccCC
Confidence 3333447899999999999999887533 33555666543 11110 000 0
Q ss_pred hhHHHHHH----HHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014798 309 ASRVRDLF----KKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (418)
Q Consensus 309 ~~~vr~lF----~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatT 376 (418)
.....+++ .......+.+|+||-|-++.+....+. +...++++.+.+++..+..+....++.|+.|.
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavvvtN 265 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGR-GELAERQQHLGKFLRALQKLADEFNVAVVITN 265 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCc-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEec
Confidence 01111222 222345678999999999875432211 12234556677777666554444456666543
No 407
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.19 E-value=0.0013 Score=72.56 Aligned_cols=66 Identities=21% Similarity=0.296 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCC
Q 014798 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPG 390 (418)
Q Consensus 311 ~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpG 390 (418)
+.|-.+..|.-..|.|+++||.-+- -+.+.++.+.+.+..+. .+..+|..|++++.+ +
T Consensus 607 rQRlalARall~~p~iliLDE~Ts~----------LD~~te~~i~~~l~~~~-----~~~T~iiItHrl~~~-----~-- 664 (694)
T TIGR03375 607 RQAVALARALLRDPPILLLDEPTSA----------MDNRSEERFKDRLKRWL-----AGKTLVLVTHRTSLL-----D-- 664 (694)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHh-----CCCEEEEEecCHHHH-----H--
Confidence 4444455555678999999997543 35666777777776653 134677777877532 3
Q ss_pred ccceEEEe
Q 014798 391 RFDRQVKH 398 (418)
Q Consensus 391 RFdr~I~v 398 (418)
.+|+.+.+
T Consensus 665 ~~D~iivl 672 (694)
T TIGR03375 665 LVDRIIVM 672 (694)
T ss_pred hCCEEEEE
Confidence 45666655
No 408
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.19 E-value=0.0016 Score=60.83 Aligned_cols=52 Identities=19% Similarity=0.114 Sum_probs=34.4
Q ss_pred HHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcch
Q 014798 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (418)
Q Consensus 319 A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ 384 (418)
|....|.++++||-.+ +-+.+....+.+++.++.. .+..+|.+|+..+.++.
T Consensus 143 al~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~~----~~~tiii~sh~~~~i~~ 194 (204)
T PRK13538 143 LWLTRAPLWILDEPFT----------AIDKQGVARLEALLAQHAE----QGGMVILTTHQDLPVAS 194 (204)
T ss_pred HHhcCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHHHH----CCCEEEEEecChhhhcc
Confidence 3446789999999744 2355666677777776531 23467888887776654
No 409
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.18 E-value=0.0017 Score=61.40 Aligned_cols=29 Identities=48% Similarity=0.838 Sum_probs=26.1
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
|+++||||+|||++|+.+|.+++++.+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 78999999999999999999999766654
No 410
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.18 E-value=0.0014 Score=62.91 Aligned_cols=20 Identities=45% Similarity=0.527 Sum_probs=18.1
Q ss_pred ceEECCCCChHHHHHHHHHH
Q 014798 267 VLLVGPPGTGKTLLAKAIAG 286 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~ 286 (418)
-+|+||||+|||+|+..+|-
T Consensus 4 ~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999998875
No 411
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.18 E-value=0.0003 Score=64.50 Aligned_cols=29 Identities=45% Similarity=0.841 Sum_probs=25.8
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
|+|+||||+|||++|+.+|.+++.+++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999998776554
No 412
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.18 E-value=0.0013 Score=67.14 Aligned_cols=111 Identities=23% Similarity=0.210 Sum_probs=62.8
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---------CCCeeeeehhh------HHHHh--hhcc---------------hh--
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE------FVEMF--VGVG---------------AS-- 310 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---------~~pfi~vs~se------fve~~--vg~~---------------~~-- 310 (418)
.-..|+||||||||.|+..+|-.. +...++++... +.+.. .|.. ..
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~~e~~ 206 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYTYEHQ 206 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCCHHHH
Confidence 347799999999999999876322 24667776543 11110 0110 01
Q ss_pred --HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014798 311 --RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (418)
Q Consensus 311 --~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatT 376 (418)
.+..+-.......+.+|+||-|-++.+....+. +...++++.+.+++..+..+....++.|+.|.
T Consensus 207 ~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~r-g~l~~rq~~L~~~~~~L~~lA~~~~vavvvTN 273 (344)
T PLN03187 207 YNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGR-GELAERQQKLAQMLSRLTKIAEEFNVAVYMTN 273 (344)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCc-cchHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 111222223345688999999998876432221 12235556677777666554444556666654
No 413
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.17 E-value=0.0064 Score=59.15 Aligned_cols=129 Identities=16% Similarity=0.232 Sum_probs=71.4
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCC---eeeeehh--hHHHHh-----hhc--ch-----------hHHHHHHHHHH
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGS--EFVEMF-----VGV--GA-----------SRVRDLFKKAK 320 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~p---fi~vs~s--efve~~-----vg~--~~-----------~~vr~lF~~A~ 320 (418)
|-.+.+.|++|||||++++.+....... ++.++.. .....| +.. .. ..+.+......
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3468999999999999999997655321 1222111 101111 100 00 11112222111
Q ss_pred h---CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEE
Q 014798 321 E---NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVK 397 (418)
Q Consensus 321 ~---~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~ 397 (418)
. ..+++|++||+.. .....+.+.+++.. ..+-++-+|..+...-.|++.++. -.+..+.
T Consensus 93 ~~k~~~~~LiIlDD~~~------------~~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~i~ 154 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGD------------KKLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDYFII 154 (241)
T ss_pred ccCCCCCeEEEEeCCCC------------chhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceEEEE
Confidence 1 3468999999632 11223445555542 334458889999888999999865 5666665
Q ss_pred ecCch--HHHHHHHHh
Q 014798 398 HVSLS--LMLWFLKTH 411 (418)
Q Consensus 398 v~~lP--~R~~IL~~~ 411 (418)
+ ... +.+.|++-+
T Consensus 155 ~-~~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 155 F-NNSKRDLENIYRNM 169 (241)
T ss_pred e-cCcHHHHHHHHHhc
Confidence 5 544 555555543
No 414
>PRK05973 replicative DNA helicase; Provisional
Probab=97.17 E-value=0.0012 Score=64.03 Aligned_cols=34 Identities=41% Similarity=0.388 Sum_probs=26.9
Q ss_pred CCceEECCCCChHHHHHHHHHHhc---CCCeeeeehh
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~s 298 (418)
.-++|.|+||+|||+++-.+|.+. |.+.++++..
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 448899999999999998876544 7777777655
No 415
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.16 E-value=0.0015 Score=61.28 Aligned_cols=23 Identities=43% Similarity=0.670 Sum_probs=20.8
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||+|+|||+|++++++..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999854
No 416
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.16 E-value=0.0017 Score=76.14 Aligned_cols=121 Identities=36% Similarity=0.482 Sum_probs=78.9
Q ss_pred cCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH--hhh-----c--chhHHHH-HHHHHHhCCCeEEEEcCC
Q 014798 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM--FVG-----V--GASRVRD-LFKKAKENAPCIVFVDEI 332 (418)
Q Consensus 263 ~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~--~vg-----~--~~~~vr~-lF~~A~~~aP~IIfIDEI 332 (418)
..+++||.|.||+|||.|..|+|++.|..+++|+.++..+. .+| + |+-+.++ -|-.|.+.. .-|++||+
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G-~WVlLDEi 1620 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG-GWVLLDEI 1620 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC-CEEEeehh
Confidence 34689999999999999999999999999999998865432 122 1 2222222 243443332 48899998
Q ss_pred cccccccCCCCCCCChHHHHHHHHHHH--------Hhc-CCCCCCCeEEEEEeCCCC------CcchhhhCCCccceEEE
Q 014798 333 DAVGRQRGTGIGGGNDEREQTLNQLLT--------EMD-GFEGNTGIIVIAATNRAD------ILDSALLRPGRFDRQVK 397 (418)
Q Consensus 333 Dal~~~r~~~~~~~~~e~~~~L~~LL~--------emd-g~~~~~~ViVIatTN~~~------~LD~ALlRpGRFdr~I~ 397 (418)
.-...+ .-.-+|..|. ++| .|.-++++.|+||-|+-+ .|+..++. ||-. +.
T Consensus 1621 NLaSQS-----------VlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFsv-V~ 1686 (4600)
T COG5271 1621 NLASQS-----------VLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFSV-VK 1686 (4600)
T ss_pred hhhHHH-----------HHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhhe-EE
Confidence 654211 1223344443 222 234467789999998543 58888888 8864 44
Q ss_pred e
Q 014798 398 H 398 (418)
Q Consensus 398 v 398 (418)
+
T Consensus 1687 ~ 1687 (4600)
T COG5271 1687 M 1687 (4600)
T ss_pred e
Confidence 5
No 417
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.16 E-value=0.0013 Score=74.38 Aligned_cols=167 Identities=19% Similarity=0.229 Sum_probs=99.1
Q ss_pred ccccccCCCCcccccccCchHHHHHHHHHHHHhcCchh--hhhcCCccC-C-CceEECCCCChHHHHHHHHHHhcCCCee
Q 014798 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPER--FTAIGARIP-K-GVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (418)
Q Consensus 218 ~~~~~~~~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~--~~~lG~~~p-~-gVLL~GPPGTGKT~LArAIA~el~~pfi 293 (418)
...|.+.+.+....++.|.......+.+.++..++++. |...+-.-. + .++++||||.|||+.+.++|.+++..++
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~ 386 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVV 386 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccccee
Confidence 35677788888888899887776677777776644421 111111111 1 3699999999999999999999999999
Q ss_pred eeehhhHHHHhh-----hc--chhHHHHHHHH---H--HhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHh
Q 014798 294 SISGSEFVEMFV-----GV--GASRVRDLFKK---A--KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 361 (418)
Q Consensus 294 ~vs~sefve~~v-----g~--~~~~vr~lF~~---A--~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~em 361 (418)
..+.++...... +. +...+...|.. . ....--||++||+|.+.. .+...-..+.+++..
T Consensus 387 E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~--------~dRg~v~~l~~l~~k- 457 (871)
T KOG1968|consen 387 EKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG--------EDRGGVSKLSSLCKK- 457 (871)
T ss_pred ecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc--------hhhhhHHHHHHHHHh-
Confidence 999886543211 11 22233333300 0 011123999999999864 122223445555552
Q ss_pred cCCCCCCCeEEEEEeCCCCCcchhhhCCCccceEEEecCch
Q 014798 362 DGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVKHVSLS 402 (418)
Q Consensus 362 dg~~~~~~ViVIatTN~~~~LD~ALlRpGRFdr~I~v~~lP 402 (418)
...-+|+++|...-.....+. |-+..+.+ ..|
T Consensus 458 ------s~~Piv~~cndr~~p~sr~~~--~~~~~l~f-~kP 489 (871)
T KOG1968|consen 458 ------SSRPLVCTCNDRNLPKSRALS--RACSDLRF-SKP 489 (871)
T ss_pred ------ccCCeEEEecCCCCccccchh--hhcceeee-cCC
Confidence 234688888865543332222 32234555 555
No 418
>PRK13764 ATPase; Provisional
Probab=97.16 E-value=0.0005 Score=74.82 Aligned_cols=69 Identities=20% Similarity=0.331 Sum_probs=41.6
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCC---Ceeee-ehhhH-----HHHhhhcchhHHHHHHHHHHhCCCeEEEEcCCcc
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGV---PFFSI-SGSEF-----VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 334 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~---pfi~v-s~sef-----ve~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDa 334 (418)
+++|++||||+||||+++|++.++.. .+..+ +..++ +..|... ..........+....|++|++||+-.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCCC
Confidence 47999999999999999999987742 22222 11121 1111100 01123333344567899999999854
No 419
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.15 E-value=0.0015 Score=61.03 Aligned_cols=49 Identities=20% Similarity=0.291 Sum_probs=32.5
Q ss_pred HHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 319 A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
|....|.++++||-.+ +-+....+.+.+++.++.. .+..+|.+|+.++.
T Consensus 140 al~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~~----~~~tii~~sH~~~~ 188 (205)
T cd03226 140 ALLSGKDLLIFDEPTS----------GLDYKNMERVGELIRELAA----QGKAVIVITHDYEF 188 (205)
T ss_pred HHHhCCCEEEEeCCCc----------cCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCHHH
Confidence 3345789999999644 3456666777777777631 24567888876554
No 420
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.15 E-value=0.00034 Score=62.76 Aligned_cols=32 Identities=34% Similarity=0.703 Sum_probs=26.5
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef 300 (418)
++|+||+|||||++|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 578999999999999999999986654 44444
No 421
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.0016 Score=71.24 Aligned_cols=43 Identities=21% Similarity=0.309 Sum_probs=31.5
Q ss_pred chhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHH
Q 014798 308 GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 360 (418)
Q Consensus 308 ~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~e 360 (418)
|..+.|-.++.|.-..|+|+++||+-... |.+.|..+.+.|..
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSAL----------DaeSE~lVq~aL~~ 649 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSAL----------DAESEYLVQEALDR 649 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhc----------chhhHHHHHHHHHH
Confidence 34566777778888899999999986653 55667777777654
No 422
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.15 E-value=0.0016 Score=61.39 Aligned_cols=54 Identities=15% Similarity=0.046 Sum_probs=35.3
Q ss_pred HHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcch
Q 014798 317 KKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (418)
Q Consensus 317 ~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ 384 (418)
..+....|.++++||-.+ +-+.+..+.+.+++.++.. .+..+|.+|+..+.++.
T Consensus 149 aral~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~~----~~~tiii~sH~~~~~~~ 202 (214)
T PRK13543 149 ARLWLSPAPLWLLDEPYA----------NLDLEGITLVNRMISAHLR----GGGAALVTTHGAYAAPP 202 (214)
T ss_pred HHHHhcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHHh----CCCEEEEEecChhhhhh
Confidence 334446789999999744 3456666777778877632 23467778887765543
No 423
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.15 E-value=0.0016 Score=71.95 Aligned_cols=57 Identities=25% Similarity=0.279 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 311 ~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
+.|-.+..|.-..|.|+++||.-+ +-+.+.++.+.+.+..+. .+..+|..|++++.+
T Consensus 599 ~qri~lARall~~~~ililDEpts----------~LD~~~~~~i~~~l~~~~-----~~~t~i~itH~~~~~ 655 (694)
T TIGR01846 599 RQRIAIARALVGNPRILIFDEATS----------ALDYESEALIMRNMREIC-----RGRTVIIIAHRLSTV 655 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCc----------CCCHHHHHHHHHHHHHHh-----CCCEEEEEeCChHHH
Confidence 334444555556789999999744 235566666766666652 234688888887643
No 424
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.00066 Score=63.00 Aligned_cols=33 Identities=33% Similarity=0.694 Sum_probs=26.3
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef 300 (418)
.++|.||||+||||+|+.||+. .++..++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHH
Confidence 3899999999999999999999 45555554443
No 425
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.13 E-value=0.0014 Score=65.66 Aligned_cols=55 Identities=24% Similarity=0.412 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeee
Q 014798 238 EAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (418)
Q Consensus 238 e~k~eL~e~v~~l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs 296 (418)
+..+.+.++++.+-...+ ....+..++|+|+||||||++++.+|.++|.+|+.++
T Consensus 111 ~~~~~~~~~l~~~~~~~~----~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 111 AQLARVRDALSGMLGAGR----RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred HHHHHHHHHHHHHHhhhh----hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 344455556555222111 1233457999999999999999999999999999543
No 426
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.12 E-value=0.0021 Score=60.44 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.8
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||+|+|||+|++++++..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999854
No 427
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.12 E-value=0.0024 Score=68.01 Aligned_cols=74 Identities=23% Similarity=0.338 Sum_probs=51.3
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHHHHhh------hc--------c--------------hhHH
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV--------G--------------ASRV 312 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefve~~v------g~--------~--------------~~~v 312 (418)
...+|+.||||+|||+|+-.++.+. |-+.++++..+-.+.+. |. + ...+
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~ 342 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDHL 342 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHHH
Confidence 3449999999999999999887654 66788887665433211 10 0 2334
Q ss_pred HHHHHHHHhCCCeEEEEcCCccccc
Q 014798 313 RDLFKKAKENAPCIVFVDEIDAVGR 337 (418)
Q Consensus 313 r~lF~~A~~~aP~IIfIDEIDal~~ 337 (418)
..+.+......|.+|+||-+..+..
T Consensus 343 ~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 343 QIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 4555566667889999999988743
No 428
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.12 E-value=0.002 Score=64.21 Aligned_cols=51 Identities=14% Similarity=0.315 Sum_probs=33.7
Q ss_pred HHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 317 KKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 317 ~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
..|..+.|.++++||-.+ +-+....+.+.+++.++.. .+..||.+|+..+.
T Consensus 136 a~al~~~p~lllLDEPt~----------gLD~~~~~~l~~~l~~~~~----~g~tvi~~sH~~~~ 186 (302)
T TIGR01188 136 AASLIHQPDVLFLDEPTT----------GLDPRTRRAIWDYIRALKE----EGVTILLTTHYMEE 186 (302)
T ss_pred HHHHhcCCCEEEEeCCCc----------CCCHHHHHHHHHHHHHHHh----CCCEEEEECCCHHH
Confidence 334446799999999633 3466667777777777641 24567778876553
No 429
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.12 E-value=0.0028 Score=67.44 Aligned_cols=112 Identities=20% Similarity=0.233 Sum_probs=63.7
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHh----cCCCeeeeehhhHHHHh--------------hhc--------------
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGSEFVEMF--------------VGV-------------- 307 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~e----l~~pfi~vs~sefve~~--------------vg~-------------- 307 (418)
|....+.+|+.||||||||+||..++.+ .+-+.++++..+-.+.+ ...
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~~~~ 96 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILDASPDPEG 96 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEecCchhcc
Confidence 4444566999999999999999987432 26788888755332221 000
Q ss_pred --------chhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCC
Q 014798 308 --------GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (418)
Q Consensus 308 --------~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~ 379 (418)
-......+........+..|+||-+.++..... ......+.+..++..+. ..++.+|.+++..
T Consensus 97 ~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~-----~~~~~r~~l~~Li~~L~----~~g~TvLLtsh~~ 167 (484)
T TIGR02655 97 QDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYD-----AVSVVRREIFRLVARLK----QIGVTTVMTTERI 167 (484)
T ss_pred ccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcC-----chHHHHHHHHHHHHHHH----HCCCEEEEEecCc
Confidence 011223344445556778899997776642211 11122334455555553 2356677777654
Q ss_pred C
Q 014798 380 D 380 (418)
Q Consensus 380 ~ 380 (418)
+
T Consensus 168 ~ 168 (484)
T TIGR02655 168 E 168 (484)
T ss_pred c
Confidence 4
No 430
>PLN02200 adenylate kinase family protein
Probab=97.12 E-value=0.00049 Score=66.42 Aligned_cols=41 Identities=22% Similarity=0.438 Sum_probs=32.4
Q ss_pred CCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH
Q 014798 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (418)
Q Consensus 260 G~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve 302 (418)
+.+.|.-+++.||||||||++|+.+|.+++.+ .++..+++.
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 34456668999999999999999999999865 466666553
No 431
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.11 E-value=0.0018 Score=60.61 Aligned_cols=49 Identities=22% Similarity=0.392 Sum_probs=32.4
Q ss_pred HhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 320 ~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
....|.++++||-.+ +-+....+.+.+++.++.. .+..+|.+|+..+.+
T Consensus 151 l~~~p~llllDEPt~----------~LD~~~~~~~~~~l~~~~~----~~~tiiivtH~~~~~ 199 (214)
T cd03292 151 IVNSPTILIADEPTG----------NLDPDTTWEIMNLLKKINK----AGTTVVVATHAKELV 199 (214)
T ss_pred HHcCCCEEEEeCCCC----------cCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHH
Confidence 345789999999644 3355666777777777631 245678888866543
No 432
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.11 E-value=0.00037 Score=61.58 Aligned_cols=33 Identities=33% Similarity=0.765 Sum_probs=26.9
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv 301 (418)
++|+|+||+|||++|+.++.+.+.+++ +...+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCcccc
Confidence 689999999999999999999876654 444444
No 433
>PRK14531 adenylate kinase; Provisional
Probab=97.11 E-value=0.0004 Score=64.02 Aligned_cols=30 Identities=33% Similarity=0.654 Sum_probs=26.7
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
.++++||||+|||++++.+|.+++.+.++.
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 489999999999999999999998776653
No 434
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.11 E-value=0.0009 Score=63.12 Aligned_cols=23 Identities=52% Similarity=0.725 Sum_probs=20.7
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.+.|.||+|+|||+|++++++..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999854
No 435
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.11 E-value=0.0011 Score=66.87 Aligned_cols=115 Identities=20% Similarity=0.283 Sum_probs=63.0
Q ss_pred ccCCCceEECCCCChHHHHHHHHHHhc------C---CCeeeeehhh------HHHHh--hhcc---------------h
Q 014798 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA------G---VPFFSISGSE------FVEMF--VGVG---------------A 309 (418)
Q Consensus 262 ~~p~gVLL~GPPGTGKT~LArAIA~el------~---~pfi~vs~se------fve~~--vg~~---------------~ 309 (418)
....-+.++||||+|||+|+..+|..+ + ...++++..+ +.+.. .+.. .
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~~~ 173 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAYNT 173 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecCCh
Confidence 333448899999999999999887532 1 2556776554 11110 0100 0
Q ss_pred hHHHHHHHH----HHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 310 SRVRDLFKK----AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 310 ~~vr~lF~~----A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
.....++.. .....+.+|+||-|-++.+....+. +...++++.+.+++..+..+....++.|+.|..
T Consensus 174 ~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~-~~~~~rq~~l~~~~~~L~~la~~~~vavv~tNq 244 (316)
T TIGR02239 174 DHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGR-GELSARQMHLARFLRSLQRLADEFGVAVVITNQ 244 (316)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCc-chHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
Confidence 111112222 2345688999999999865422211 111234455666766665554445566666543
No 436
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.10 E-value=0.0077 Score=59.49 Aligned_cols=73 Identities=32% Similarity=0.483 Sum_probs=44.1
Q ss_pred ccCCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhH-------HHHhh---hc-------c---hhHHHHHHHH
Q 014798 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF-------VEMFV---GV-------G---ASRVRDLFKK 318 (418)
Q Consensus 262 ~~p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sef-------ve~~v---g~-------~---~~~vr~lF~~ 318 (418)
..|+-++++||+|+|||+++..+|..+ +..+..+++.-+ ...|. +. . ...+.+.+..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 345678899999999999999998765 555555554421 11111 10 0 1222344455
Q ss_pred HHhCCCeEEEEcCCcc
Q 014798 319 AKENAPCIVFVDEIDA 334 (418)
Q Consensus 319 A~~~aP~IIfIDEIDa 334 (418)
+......+|+||=.-.
T Consensus 150 ~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 150 AKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHCCCCEEEEeCCCC
Confidence 5556667999887533
No 437
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.10 E-value=0.0025 Score=69.09 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.9
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.++|++|+|||||++.+++..
T Consensus 363 ~v~IvG~sGsGKSTLl~lL~gl~ 385 (588)
T PRK13657 363 TVAIVGPTGAGKSTLINLLQRVF 385 (588)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 49999999999999999999854
No 438
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.10 E-value=0.0015 Score=63.36 Aligned_cols=55 Identities=18% Similarity=0.320 Sum_probs=34.4
Q ss_pred HHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 315 LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 315 lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
.+..|....|.++++||-.+ +-+......+.++|.++.. ..+..+|.+|+..+.+
T Consensus 130 ~laral~~~p~lllLDEPt~----------~LD~~~~~~l~~~L~~~~~---~~g~tiiivsH~~~~i 184 (251)
T PRK09544 130 LLARALLNRPQLLVLDEPTQ----------GVDVNGQVALYDLIDQLRR---ELDCAVLMVSHDLHLV 184 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCc----------CCCHHHHHHHHHHHHHHHH---hcCCEEEEEecCHHHH
Confidence 34444556799999999744 2355566677777766531 1135677777766543
No 439
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.10 E-value=0.00087 Score=61.43 Aligned_cols=72 Identities=29% Similarity=0.397 Sum_probs=40.9
Q ss_pred ceEECCCCChHHHHHHHHHHhc-------------CCCeeeeehhhH----HHH---------------hhh---c----
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA-------------GVPFFSISGSEF----VEM---------------FVG---V---- 307 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el-------------~~pfi~vs~sef----ve~---------------~vg---~---- 307 (418)
++|+||||+|||+++..+|... +.++++++..+- ... +.. .
T Consensus 35 ~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (193)
T PF13481_consen 35 TLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCIR 114 (193)
T ss_dssp EEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccce
Confidence 8899999999999999987644 235666654421 111 100 0
Q ss_pred ----------chhHHHHHHHHHHh-CCCeEEEEcCCcccccc
Q 014798 308 ----------GASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQ 338 (418)
Q Consensus 308 ----------~~~~vr~lF~~A~~-~aP~IIfIDEIDal~~~ 338 (418)
....++++.+.+.. ..|.+|+||-+..+...
T Consensus 115 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 115 LFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp --TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 01223455566666 57899999999998754
No 440
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.10 E-value=0.0012 Score=64.97 Aligned_cols=38 Identities=26% Similarity=0.445 Sum_probs=29.8
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~ 303 (418)
.-+++.|+||||||++|+.++.++. .+..++..++.+.
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~ 40 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQS 40 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHH
Confidence 3488999999999999999999983 3556666666544
No 441
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.09 E-value=0.0034 Score=55.77 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=22.2
Q ss_pred CceEECCCCChHHH-HHHHHHHhcC----CCeeeeeh
Q 014798 266 GVLLVGPPGTGKTL-LAKAIAGEAG----VPFFSISG 297 (418)
Q Consensus 266 gVLL~GPPGTGKT~-LArAIA~el~----~pfi~vs~ 297 (418)
.+++.||+|||||. ++..+...+. ..++.+..
T Consensus 26 ~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 26 DVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred cEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 79999999999999 5555544432 34555554
No 442
>PRK14530 adenylate kinase; Provisional
Probab=97.09 E-value=0.0004 Score=65.57 Aligned_cols=30 Identities=37% Similarity=0.627 Sum_probs=26.7
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
.++|.||||+|||++++.+|..++.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 489999999999999999999999776643
No 443
>PRK06696 uridine kinase; Validated
Probab=97.09 E-value=0.00077 Score=64.15 Aligned_cols=38 Identities=34% Similarity=0.475 Sum_probs=32.4
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc---CCCeeeeehhhHH
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 301 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el---~~pfi~vs~sefv 301 (418)
|.-|.+.|++|+||||+|+.|+..+ +.+++.++..+|.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4458899999999999999999988 6788887777764
No 444
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.08 E-value=0.0016 Score=61.04 Aligned_cols=23 Identities=43% Similarity=0.694 Sum_probs=21.0
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||+|+|||+|++.+++..
T Consensus 35 ~~~i~G~nGsGKSTLl~~l~G~~ 57 (202)
T cd03233 35 MVLVLGRPGSGCSTLLKALANRT 57 (202)
T ss_pred EEEEECCCCCCHHHHHHHhcccC
Confidence 48899999999999999999864
No 445
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.08 E-value=0.0005 Score=66.29 Aligned_cols=32 Identities=25% Similarity=0.590 Sum_probs=28.0
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
|-.++|.||||+|||++|+.+|..++++++++
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 44599999999999999999999999877655
No 446
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.08 E-value=0.00048 Score=62.25 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=28.2
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeee
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs 296 (418)
.++|+|++|||||++++.+|.+++.+|+..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5899999999999999999999999988654
No 447
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.08 E-value=0.00085 Score=60.33 Aligned_cols=36 Identities=36% Similarity=0.610 Sum_probs=25.7
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHH
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~ 303 (418)
|.|+|+||||||+|+++++.. |.+++.-.+.++.+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~~~ 37 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREIIEE 37 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHHHH
Confidence 789999999999999999988 888775555565543
No 448
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0031 Score=59.20 Aligned_cols=51 Identities=24% Similarity=0.217 Sum_probs=37.0
Q ss_pred CeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhC
Q 014798 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLR 388 (418)
Q Consensus 324 P~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlR 388 (418)
..+-++||-.+-. +.+....++.++.+-- +.+=+||+||+.+-.++++-.+
T Consensus 149 ~pLWiLDEP~taL----------Dk~g~a~l~~l~~~H~----~~GGiVllttHq~l~~~~a~~~ 199 (209)
T COG4133 149 APLWILDEPFTAL----------DKEGVALLTALMAAHA----AQGGIVLLTTHQPLPIASAQIR 199 (209)
T ss_pred CCceeecCccccc----------CHHHHHHHHHHHHHHh----cCCCEEEEecCCccCCCccceE
Confidence 4488899976543 4556677888887643 3455899999988888877766
No 449
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.07 E-value=0.0015 Score=61.94 Aligned_cols=49 Identities=12% Similarity=0.289 Sum_probs=32.4
Q ss_pred HhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 320 ~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
....|.++++||-.+ +-+....+.+.+++.++.. ..+..+|.+|+..+.
T Consensus 146 l~~~p~illlDEPt~----------~LD~~~~~~l~~~l~~~~~---~~~~tii~~sH~~~~ 194 (230)
T TIGR03410 146 LVTRPKLLLLDEPTE----------GIQPSIIKDIGRVIRRLRA---EGGMAILLVEQYLDF 194 (230)
T ss_pred HhcCCCEEEecCCcc----------cCCHHHHHHHHHHHHHHHH---cCCcEEEEEeCCHHH
Confidence 345789999999644 3456666777788877642 124567778776654
No 450
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.06 E-value=0.0017 Score=60.48 Aligned_cols=52 Identities=13% Similarity=0.042 Sum_probs=34.0
Q ss_pred HHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcch
Q 014798 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (418)
Q Consensus 319 A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ 384 (418)
|....|.++++||-.. +-+......+.+++.++. ..+..+|.+|+.++.++.
T Consensus 141 al~~~p~~lilDEP~~----------~LD~~~~~~l~~~l~~~~----~~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 141 LWMSKAKLWLLDEPLV----------ALDELSLLTIITKIQEHR----AKGGAVLLTSHQDLPLNK 192 (200)
T ss_pred HHhcCCCEEEEeCCCc----------ccCHHHHHHHHHHHHHHH----HcCCEEEEEeCCchhccc
Confidence 3345688999999644 235556667777777653 124568888887776554
No 451
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.06 E-value=0.0013 Score=69.52 Aligned_cols=96 Identities=21% Similarity=0.312 Sum_probs=61.8
Q ss_pred CCCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCC-ceEECCCCChHHHHHHHHHHhcCCCee-eeehhhHHH
Q 014798 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKG-VLLVGPPGTGKTLLAKAIAGEAGVPFF-SISGSEFVE 302 (418)
Q Consensus 225 ~~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~g-VLL~GPPGTGKT~LArAIA~el~~pfi-~vs~sefve 302 (418)
....+++++.......+.+.+++ ..|+ | +|++||.|+|||+...++..+++.+.. .++..|=+|
T Consensus 232 ~~~l~l~~Lg~~~~~~~~~~~~~---~~p~-----------GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE 297 (500)
T COG2804 232 QVILDLEKLGMSPFQLARLLRLL---NRPQ-----------GLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVE 297 (500)
T ss_pred cccCCHHHhCCCHHHHHHHHHHH---hCCC-----------eEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCee
Confidence 34677788777776666555543 3443 6 667899999999999999988865544 334444333
Q ss_pred Hhh-h--------cchhHHHHHHHHHHhCCCeEEEEcCCcc
Q 014798 303 MFV-G--------VGASRVRDLFKKAKENAPCIVFVDEIDA 334 (418)
Q Consensus 303 ~~v-g--------~~~~~vr~lF~~A~~~aP~IIfIDEIDa 334 (418)
... | ...-.....++....+.|+||.+.||-.
T Consensus 298 ~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 298 YQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred eecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 211 1 0111233445555678999999999954
No 452
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.05 E-value=0.00097 Score=62.51 Aligned_cols=23 Identities=48% Similarity=0.687 Sum_probs=20.7
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||+|+|||+|++++++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999853
No 453
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.05 E-value=0.0038 Score=58.24 Aligned_cols=55 Identities=11% Similarity=0.079 Sum_probs=34.7
Q ss_pred HHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcch
Q 014798 316 FKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (418)
Q Consensus 316 F~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ 384 (418)
+..|....|.++++||-.+ +-+....+.+.+++.++.. .+..+|.+|+++..+..
T Consensus 136 laral~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~~----~g~tiii~sH~~~~~~~ 190 (201)
T cd03231 136 LARLLLSGRPLWILDEPTT----------ALDKAGVARFAEAMAGHCA----RGGMVVLTTHQDLGLSE 190 (201)
T ss_pred HHHHHhcCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHh----CCCEEEEEecCchhhhh
Confidence 3334446789999999644 2355666677777766531 23467778887665443
No 454
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.05 E-value=0.0016 Score=59.19 Aligned_cols=40 Identities=28% Similarity=0.401 Sum_probs=31.0
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcC---CCeeeeehhhHHHH
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVEM 303 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~---~pfi~vs~sefve~ 303 (418)
|.-++|+|+||+|||++|++++.++. ...+.+++..+.+.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~ 49 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREI 49 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhh
Confidence 44689999999999999999998885 33566666665443
No 455
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.05 E-value=0.0038 Score=59.69 Aligned_cols=126 Identities=22% Similarity=0.337 Sum_probs=75.4
Q ss_pred cCchhhhhcCCccCCC--ceEECCCCChHHHHHHHHHHhc---CCCeeeeehh----hHHHH------------------
Q 014798 251 KKPERFTAIGARIPKG--VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS----EFVEM------------------ 303 (418)
Q Consensus 251 ~~p~~~~~lG~~~p~g--VLL~GPPGTGKT~LArAIA~el---~~pfi~vs~s----efve~------------------ 303 (418)
.+-+.-.++|.-+|-| +++.|+.|||||.|.+.+|.-+ +....+++.. +|..+
T Consensus 13 gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~ 92 (235)
T COG2874 13 GNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLL 92 (235)
T ss_pred CcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeE
Confidence 3444556677777766 7889999999999999997533 4455555432 22211
Q ss_pred hh-----------hcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 014798 304 FV-----------GVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (418)
Q Consensus 304 ~v-----------g~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViV 372 (418)
++ ....+.+..+.+..+.....||+||-++.+.... .++.+.++++.+..+..... ++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~----------~~~~vl~fm~~~r~l~d~gK-vI 161 (235)
T COG2874 93 FFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD----------SEDAVLNFMTFLRKLSDLGK-VI 161 (235)
T ss_pred EEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc----------cHHHHHHHHHHHHHHHhCCC-EE
Confidence 00 0112233344444444556799999999886421 24456666666655554443 44
Q ss_pred EEEeCCCCCcchhhhC
Q 014798 373 IAATNRADILDSALLR 388 (418)
Q Consensus 373 IatTN~~~~LD~ALlR 388 (418)
|.|. +|+.+|++.+-
T Consensus 162 ilTv-hp~~l~e~~~~ 176 (235)
T COG2874 162 ILTV-HPSALDEDVLT 176 (235)
T ss_pred EEEe-ChhhcCHHHHH
Confidence 4444 47888887764
No 456
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.05 E-value=0.0012 Score=61.63 Aligned_cols=23 Identities=39% Similarity=0.457 Sum_probs=20.6
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.+.|.||+|+|||+|++.+++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 28 IYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 48899999999999999999753
No 457
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.05 E-value=0.0014 Score=66.42 Aligned_cols=69 Identities=26% Similarity=0.266 Sum_probs=47.5
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHHHhhhcch----h----HHHH---HHHHHHhCCCeEEEEcCCcc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGA----S----RVRD---LFKKAKENAPCIVFVDEIDA 334 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve~~vg~~~----~----~vr~---lF~~A~~~aP~IIfIDEIDa 334 (418)
.+.|.|+||||||+|++++++.++.+++.-.+.++.+...+.+. . .+.. ....+...+..+||+|- +.
T Consensus 164 ~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~~~~~~~~a~~iif~D~-~~ 242 (325)
T TIGR01526 164 TVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRYIDYAVRHAHKIAFIDT-DF 242 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHhhcCCeEEEcC-Ch
Confidence 58999999999999999999999999988878877655431111 0 1111 12333345667999995 44
Q ss_pred c
Q 014798 335 V 335 (418)
Q Consensus 335 l 335 (418)
+
T Consensus 243 ~ 243 (325)
T TIGR01526 243 I 243 (325)
T ss_pred H
Confidence 4
No 458
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0042 Score=64.38 Aligned_cols=94 Identities=21% Similarity=0.392 Sum_probs=64.9
Q ss_pred CceEECCCCChHHHHHHHHHHhc--CCCeeeeehhhHHHHh------hh--------cchhHHHHHHHHHHhCCCeEEEE
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA--GVPFFSISGSEFVEMF------VG--------VGASRVRDLFKKAKENAPCIVFV 329 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el--~~pfi~vs~sefve~~------vg--------~~~~~vr~lF~~A~~~aP~IIfI 329 (418)
-+||-|.||.|||+|.-.+|..+ ..+++||++.+-..+. .+ ..+.++.++.+......|.+++|
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVI 174 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVI 174 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEE
Confidence 37788999999999988876655 3389999998755432 22 13456788888898999999999
Q ss_pred cCCcccccccCCCCCCCChHHHHHHHHHHH
Q 014798 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (418)
Q Consensus 330 DEIDal~~~r~~~~~~~~~e~~~~L~~LL~ 359 (418)
|-|..+....-+...++-........+|..
T Consensus 175 DSIQT~~s~~~~SapGsVsQVRe~t~~L~~ 204 (456)
T COG1066 175 DSIQTLYSEEITSAPGSVSQVREVAAELMR 204 (456)
T ss_pred eccceeecccccCCCCcHHHHHHHHHHHHH
Confidence 999998766533322332233333344443
No 459
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.04 E-value=0.0029 Score=57.29 Aligned_cols=32 Identities=34% Similarity=0.448 Sum_probs=26.5
Q ss_pred ceEECCCCChHHHHHHHHHHhc---CCCeeeeehh
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el---~~pfi~vs~s 298 (418)
++++||||+|||++++.+|..+ +..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6889999999999999998765 6667777665
No 460
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.03 E-value=0.00054 Score=62.80 Aligned_cols=33 Identities=27% Similarity=0.676 Sum_probs=29.5
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeeeeeh
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~ 297 (418)
..++|+||+|+|||++++.+|+.++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 469999999999999999999999999877653
No 461
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.03 E-value=0.0025 Score=68.95 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=24.1
Q ss_pred hcCCccCCC--ceEECCCCChHHHHHHHHHHhc
Q 014798 258 AIGARIPKG--VLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 258 ~lG~~~p~g--VLL~GPPGTGKT~LArAIA~el 288 (418)
.+....++| +.|+||+|+|||+|++.+++..
T Consensus 333 ~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~ 365 (569)
T PRK10789 333 NVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF 365 (569)
T ss_pred CeeEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 334444444 8899999999999999999854
No 462
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.03 E-value=0.0026 Score=69.04 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=36.0
Q ss_pred HHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 313 RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 313 r~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
|-.+..|.-..|.|+++||..+- -+.+.++.+.+.+.++. .+..+|..|++++.+
T Consensus 479 rl~lARall~~p~ililDEpts~----------LD~~~~~~i~~~l~~~~-----~~~tvI~isH~~~~~ 533 (585)
T TIGR01192 479 RLAIARAILKNAPILVLDEATSA----------LDVETEARVKNAIDALR-----KNRTTFIIAHRLSTV 533 (585)
T ss_pred HHHHHHHHhcCCCEEEEECCccC----------CCHHHHHHHHHHHHHHh-----CCCEEEEEEcChHHH
Confidence 33444455567899999997543 35666677777776653 234678888877543
No 463
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.03 E-value=0.0049 Score=56.75 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.5
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.+.|.||+|+|||+|++++++..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998743
No 464
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.03 E-value=0.0024 Score=65.02 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=34.2
Q ss_pred HHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 319 A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
|..+.|.++++||-.+ +-+......+.+++.++.. .+..||.+|+..+.+
T Consensus 186 aL~~~P~lLiLDEPt~----------gLD~~~r~~l~~~l~~l~~----~g~tilisSH~l~e~ 235 (340)
T PRK13536 186 ALINDPQLLILDEPTT----------GLDPHARHLIWERLRSLLA----RGKTILLTTHFMEEA 235 (340)
T ss_pred HHhcCCCEEEEECCCC----------CCCHHHHHHHHHHHHHHHh----CCCEEEEECCCHHHH
Confidence 4446799999999633 4466677777888877642 245678888765543
No 465
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.02 E-value=0.003 Score=68.04 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=21.1
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.++||+|+|||+|++.+++.+
T Consensus 368 ~i~IvG~sGsGKSTLlklL~gl~ 390 (576)
T TIGR02204 368 TVALVGPSGAGKSTLFQLLLRFY 390 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 49999999999999999999865
No 466
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.02 E-value=0.0021 Score=63.75 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=28.9
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc----C-CCeeeeehhhH
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA----G-VPFFSISGSEF 300 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el----~-~pfi~vs~sef 300 (418)
++.++|+||+|+|||+++..+|..+ + ..+..+++..+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 4568899999999999999998755 3 56666666553
No 467
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.02 E-value=0.0045 Score=66.04 Aligned_cols=95 Identities=20% Similarity=0.306 Sum_probs=57.5
Q ss_pred CCcccccccCchHHHHHHHHHHHHhcCchhhhhcCCccCCC-ceEECCCCChHHHHHHHHHHhcC---CCeeeeeh-hhH
Q 014798 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKG-VLLVGPPGTGKTLLAKAIAGEAG---VPFFSISG-SEF 300 (418)
Q Consensus 226 ~~~~f~dV~G~de~k~eL~e~v~~l~~p~~~~~lG~~~p~g-VLL~GPPGTGKT~LArAIA~el~---~pfi~vs~-sef 300 (418)
...+++++.-.++..+.+.+++. .+ .| ++++||+|+|||++++++..+.. ..++++.- -++
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~---~~-----------~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIR---RP-----------HGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEY 282 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHh---cC-----------CCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeee
Confidence 34577777655655555554332 23 25 68999999999999998877663 33444321 111
Q ss_pred HHHh-----hhc-chhHHHHHHHHHHhCCCeEEEEcCCcc
Q 014798 301 VEMF-----VGV-GASRVRDLFKKAKENAPCIVFVDEIDA 334 (418)
Q Consensus 301 ve~~-----vg~-~~~~vr~lF~~A~~~aP~IIfIDEIDa 334 (418)
.-.- +.. ......+....+..+.|++|++.||..
T Consensus 283 ~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 283 QIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred ecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 1000 111 112344566667778999999999843
No 468
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.01 E-value=0.0015 Score=66.42 Aligned_cols=20 Identities=55% Similarity=0.991 Sum_probs=19.4
Q ss_pred ceEECCCCChHHHHHHHHHH
Q 014798 267 VLLVGPPGTGKTLLAKAIAG 286 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~ 286 (418)
+.|.||+||||||+.|.||+
T Consensus 32 ~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 88999999999999999998
No 469
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.01 E-value=0.00056 Score=62.25 Aligned_cols=33 Identities=27% Similarity=0.532 Sum_probs=26.7
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeeehhhH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sef 300 (418)
-+++.||||+|||++++.+|.+++.+. ++..++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~~ 37 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGDL 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHH
Confidence 378999999999999999999987654 444443
No 470
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.01 E-value=0.0018 Score=61.00 Aligned_cols=23 Identities=48% Similarity=0.566 Sum_probs=20.6
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||+|+|||+|++++++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998743
No 471
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.01 E-value=0.0031 Score=67.79 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=21.0
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.++|++|+|||||++.+++..
T Consensus 360 ~v~IvG~sGsGKSTLl~lL~gl~ 382 (571)
T TIGR02203 360 TVALVGRSGSGKSTLVNLIPRFY 382 (571)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 49999999999999999999854
No 472
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.01 E-value=0.001 Score=62.31 Aligned_cols=23 Identities=48% Similarity=0.684 Sum_probs=20.9
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.+.|.||+|+|||+|++.+++..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999854
No 473
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.00 E-value=0.0029 Score=59.16 Aligned_cols=48 Identities=27% Similarity=0.402 Sum_probs=32.2
Q ss_pred HhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 320 ~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
....|.++++||-.+ +-+....+.+.+++.++.. .+..+|.+|+.++.
T Consensus 149 l~~~p~llllDEPt~----------~LD~~~~~~~~~~l~~~~~----~~~tvi~~sH~~~~ 196 (211)
T cd03225 149 LAMDPDILLLDEPTA----------GLDPAGRRELLELLKKLKA----EGKTIIIVTHDLDL 196 (211)
T ss_pred HhcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHH
Confidence 335688999999644 3456666777777777642 24578888886554
No 474
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.00 E-value=0.0025 Score=70.84 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=21.1
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|+||+|+|||||++.+++..
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~ 531 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLY 531 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 39999999999999999999855
No 475
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.00 E-value=0.0034 Score=59.28 Aligned_cols=50 Identities=26% Similarity=0.314 Sum_probs=33.4
Q ss_pred HHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 319 A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
|....|.++++||-.+ +-+....+.+.++|.++.. .+..+|.+|+.++.+
T Consensus 138 al~~~p~llllDEP~~----------~LD~~~~~~l~~~L~~~~~----~~~tiii~sH~~~~~ 187 (223)
T TIGR03740 138 ALLNHPKLLILDEPTN----------GLDPIGIQELRELIRSFPE----QGITVILSSHILSEV 187 (223)
T ss_pred HHhcCCCEEEECCCcc----------CCCHHHHHHHHHHHHHHHH----CCCEEEEEcCCHHHH
Confidence 3445789999999644 3456666777777777631 245678888876643
No 476
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.0013 Score=62.03 Aligned_cols=23 Identities=35% Similarity=0.395 Sum_probs=20.8
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||+|+|||+|++++++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 28 IFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999854
No 477
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.99 E-value=0.0024 Score=60.75 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.9
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.+.|.||+|+|||+|++++|+..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 33 IFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999854
No 478
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.99 E-value=0.0028 Score=59.67 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.7
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||+|+|||+|++++++..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999854
No 479
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.99 E-value=0.0028 Score=59.21 Aligned_cols=49 Identities=12% Similarity=0.241 Sum_probs=32.7
Q ss_pred HhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCc
Q 014798 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (418)
Q Consensus 320 ~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~L 382 (418)
....|.++++||-.+ +-+......+.+++.++.. .+..+|.+|+.++.+
T Consensus 150 l~~~p~llllDEP~~----------~LD~~~~~~l~~~l~~~~~----~~~tvi~~sh~~~~~ 198 (213)
T cd03262 150 LAMNPKVMLFDEPTS----------ALDPELVGEVLDVMKDLAE----EGMTMVVVTHEMGFA 198 (213)
T ss_pred HhcCCCEEEEeCCcc----------CCCHHHHHHHHHHHHHHHH----cCCEEEEEeCCHHHH
Confidence 335689999999644 3456666777788877642 234677788866543
No 480
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.99 E-value=0.0083 Score=62.95 Aligned_cols=37 Identities=30% Similarity=0.317 Sum_probs=27.9
Q ss_pred CCCceEECCCCChHHHHHHHHHHhc-----CCCeeeeehhhH
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEF 300 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el-----~~pfi~vs~sef 300 (418)
++.++|+||+|+|||+++..+|..+ +..+..+++..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 3468999999999999999887643 345666666553
No 481
>PLN02674 adenylate kinase
Probab=96.99 E-value=0.0023 Score=62.39 Aligned_cols=36 Identities=28% Similarity=0.545 Sum_probs=29.1
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHH
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefv 301 (418)
+..++|.||||+||+|+|+.+|..++.+.+ +..+++
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~Gdll 66 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDML 66 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHHH
Confidence 346999999999999999999999986554 445544
No 482
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=96.99 E-value=0.0054 Score=56.68 Aligned_cols=111 Identities=22% Similarity=0.286 Sum_probs=61.3
Q ss_pred CceEECCCCChHHHHHHHHHHhcCCCeeeee-hhhH-------------------------------HHHhhhcchhHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS-GSEF-------------------------------VEMFVGVGASRVR 313 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~~pfi~vs-~sef-------------------------------ve~~vg~~~~~vr 313 (418)
-.+++||.|+|||.+..|+.-.++..-.... ..++ .+.... +..+.+
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~LS-~Ge~~r 102 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQILS-GGEKSL 102 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCcccCC-HHHHHH
Confidence 4679999999999999999654432111110 0110 000111 122333
Q ss_pred HHHHHHHh----CCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCC
Q 014798 314 DLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRP 389 (418)
Q Consensus 314 ~lF~~A~~----~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRp 389 (418)
-.+..+.. ..|.++++||.+.-. +....+.+.+++.++.. .+..+|.+|++++. .+
T Consensus 103 ~~Laral~~~~~~~p~llilDEp~~~L----------D~~~~~~i~~~L~~~~~----~g~tiIiiSH~~~~-----~~- 162 (178)
T cd03239 103 SALALIFALQEIKPSPFYVLDEIDAAL----------DPTNRRRVSDMIKEMAK----HTSQFIVITLKKEM-----FE- 162 (178)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCC----------CHHHHHHHHHHHHHHHh----CCCEEEEEECCHHH-----Hh-
Confidence 33443322 568899999987743 44455566666666531 23567777876543 22
Q ss_pred CccceEEEe
Q 014798 390 GRFDRQVKH 398 (418)
Q Consensus 390 GRFdr~I~v 398 (418)
..|+.+.+
T Consensus 163 -~adrvi~i 170 (178)
T cd03239 163 -NADKLIGV 170 (178)
T ss_pred -hCCeEEEE
Confidence 45666554
No 483
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.98 E-value=0.00027 Score=75.93 Aligned_cols=151 Identities=25% Similarity=0.274 Sum_probs=77.0
Q ss_pred cccCchHHHHHHHHHHHH--hcCchhhhhcCCccCCCceEECCCCChHHHHHHHHHHhcCCCeeeee-hhhHHHHhhhcc
Q 014798 232 DVAGVDEAKQDFMEVVEF--LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS-GSEFVEMFVGVG 308 (418)
Q Consensus 232 dV~G~de~k~eL~e~v~~--l~~p~~~~~lG~~~p~gVLL~GPPGTGKT~LArAIA~el~~pfi~vs-~sefve~~vg~~ 308 (418)
.|.|.+.+|..+.-.+-. -+++..- -..+.--+|||+|.|||||+-+.|.+++-....++.-- ++. -+|.+
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~k--hkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGAS----avGLT 523 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGK--HKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGAS----AVGLT 523 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCC--ceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCcc----cccee
Confidence 356777777665443322 1222211 11222346999999999999999999987755554321 111 12222
Q ss_pred hhHHHH-----HHHHHH---hCCCeEEEEcCCcccccccCCCCCCCChHHHHHHH-----HHHHHhcCCCCCCCeEEEEE
Q 014798 309 ASRVRD-----LFKKAK---ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLN-----QLLTEMDGFEGNTGIIVIAA 375 (418)
Q Consensus 309 ~~~vr~-----lF~~A~---~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~-----~LL~emdg~~~~~~ViVIat 375 (418)
+...++ +--++- -....|.+|||+|++-.+.. ..-|+..+|.-- -+.+.+ +....||||
T Consensus 524 a~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDR---tSIHEAMEQQSISISKAGIVtsL-----qArctvIAA 595 (854)
T KOG0477|consen 524 AYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDR---TSIHEAMEQQSISISKAGIVTSL-----QARCTVIAA 595 (854)
T ss_pred EEEeeCCccceeeeccCeEEEccCceEEeehhhhhccccc---chHHHHHHhcchhhhhhhHHHHH-----Hhhhhhhee
Confidence 211111 110000 01234899999999953221 111222222110 022222 234679999
Q ss_pred eCCCC-------------CcchhhhCCCccceEEEe
Q 014798 376 TNRAD-------------ILDSALLRPGRFDRQVKH 398 (418)
Q Consensus 376 TN~~~-------------~LD~ALlRpGRFdr~I~v 398 (418)
+|... .|-+.+++ |||-...+
T Consensus 596 anPigGRY~~s~tFaqNV~ltePIlS--RFDiLcVv 629 (854)
T KOG0477|consen 596 ANPIGGRYNPSLTFAQNVDLTEPILS--RFDILCVV 629 (854)
T ss_pred cCCCCCccCCccchhhccccccchhh--hcceeeee
Confidence 99622 35556667 99976655
No 484
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.98 E-value=0.0036 Score=65.07 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=21.3
Q ss_pred ceEECCCCChHHHHHHHHHHhcC
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAG 289 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~ 289 (418)
++|+||||+|||+|++.+++...
T Consensus 171 ~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 171 GLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred EEEECCCCCChhHHHHHHHHhhc
Confidence 99999999999999999998753
No 485
>PHA02774 E1; Provisional
Probab=96.98 E-value=0.0029 Score=68.31 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=27.1
Q ss_pred CCceEECCCCChHHHHHHHHHHhcCCCeee-eeh
Q 014798 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFS-ISG 297 (418)
Q Consensus 265 ~gVLL~GPPGTGKT~LArAIA~el~~pfi~-vs~ 297 (418)
++++|+||||||||++|.++++.++...+. ++.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 479999999999999999999998654433 553
No 486
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=96.98 E-value=0.0029 Score=70.08 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcchhhhCC
Q 014798 310 SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRP 389 (418)
Q Consensus 310 ~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ALlRp 389 (418)
++.|-.+..|--+.|.|+++||.-+- -+.+.++.+.+.+..+. +..+|..|++++.+ +
T Consensus 616 QrQRialARall~~p~iliLDE~Ts~----------LD~~te~~i~~~L~~~~------~~T~IiitHr~~~~-----~- 673 (708)
T TIGR01193 616 QKQRIALARALLTDSKVLILDESTSN----------LDTITEKKIVNNLLNLQ------DKTIIFVAHRLSVA-----K- 673 (708)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCcccc----------CCHHHHHHHHHHHHHhc------CCEEEEEecchHHH-----H-
Confidence 34444555555677899999997543 35566666666665542 23567778876532 2
Q ss_pred CccceEEEe
Q 014798 390 GRFDRQVKH 398 (418)
Q Consensus 390 GRFdr~I~v 398 (418)
.+|+.+.+
T Consensus 674 -~~D~i~~l 681 (708)
T TIGR01193 674 -QSDKIIVL 681 (708)
T ss_pred -cCCEEEEE
Confidence 45665554
No 487
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.97 E-value=0.0015 Score=61.06 Aligned_cols=67 Identities=28% Similarity=0.447 Sum_probs=44.0
Q ss_pred ccCCCceEECCCCChHHHHHHHHHHhc-CCCeeeeehhhHHHHhhh------------------cchhHHHHHHHHHHhC
Q 014798 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFVEMFVG------------------VGASRVRDLFKKAKEN 322 (418)
Q Consensus 262 ~~p~gVLL~GPPGTGKT~LArAIA~el-~~pfi~vs~sefve~~vg------------------~~~~~vr~lF~~A~~~ 322 (418)
..|.-+++.|+||+|||+++..+..+. +..++.++..++...+.. ........+++.+..+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~ 92 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIEN 92 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 456779999999999999999999888 778899998887644211 0112344566677777
Q ss_pred CCeEEE
Q 014798 323 APCIVF 328 (418)
Q Consensus 323 aP~IIf 328 (418)
...|||
T Consensus 93 ~~nii~ 98 (199)
T PF06414_consen 93 RYNIIF 98 (199)
T ss_dssp T--EEE
T ss_pred CCCEEE
Confidence 777776
No 488
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=96.97 E-value=0.0032 Score=67.64 Aligned_cols=23 Identities=39% Similarity=0.754 Sum_probs=21.1
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.+.|+||+|+|||+|++.+++..
T Consensus 346 ~~~ivG~sGsGKSTL~~ll~g~~ 368 (544)
T TIGR01842 346 ALAIIGPSGSGKSTLARLIVGIW 368 (544)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999999865
No 489
>PRK06547 hypothetical protein; Provisional
Probab=96.97 E-value=0.00063 Score=62.70 Aligned_cols=32 Identities=38% Similarity=0.548 Sum_probs=27.7
Q ss_pred CCCceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 264 p~gVLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
+.-|++.|++|||||++|+.+|+.++++++..
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 44688899999999999999999998877654
No 490
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.97 E-value=0.0023 Score=62.19 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=20.8
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||+|+|||+|++++++..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999854
No 491
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.97 E-value=0.0017 Score=63.93 Aligned_cols=71 Identities=27% Similarity=0.273 Sum_probs=47.3
Q ss_pred CceEECCCCChHHHHHHHHHHhcC----------CCeeeeehhhHHH-----------------Hhhh--cchhHHHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEAG----------VPFFSISGSEFVE-----------------MFVG--VGASRVRDLF 316 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el~----------~pfi~vs~sefve-----------------~~vg--~~~~~vr~lF 316 (418)
.+-|+|++||||||++|.+.+-.. .++..++..+..+ .|.. .|..+.|-.+
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~I 120 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGI 120 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHH
Confidence 588999999999999999987542 2222222221111 1111 1445666677
Q ss_pred HHHHhCCCeEEEEcCCcccc
Q 014798 317 KKAKENAPCIVFVDEIDAVG 336 (418)
Q Consensus 317 ~~A~~~aP~IIfIDEIDal~ 336 (418)
+.|..-.|.+|+.||..+..
T Consensus 121 ARALal~P~liV~DEpvSaL 140 (268)
T COG4608 121 ARALALNPKLIVADEPVSAL 140 (268)
T ss_pred HHHHhhCCcEEEecCchhhc
Confidence 77888899999999987764
No 492
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.97 E-value=0.0058 Score=57.28 Aligned_cols=52 Identities=25% Similarity=0.118 Sum_probs=33.9
Q ss_pred HHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCCcch
Q 014798 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (418)
Q Consensus 319 A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~LD~ 384 (418)
|....|.++++||-.+ +-+......+.+++.++.. .+..+|.+|+..+.++.
T Consensus 141 al~~~p~llllDEPt~----------~LD~~~~~~l~~~l~~~~~----~~~tiii~sH~~~~~~~ 192 (207)
T PRK13539 141 LLVSNRPIWILDEPTA----------ALDAAAVALFAELIRAHLA----QGGIVIAATHIPLGLPG 192 (207)
T ss_pred HHhcCCCEEEEeCCcc----------cCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCchhhcc
Confidence 3345689999999644 2355555666667666531 24578888887776654
No 493
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.97 E-value=0.003 Score=61.21 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=20.8
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||+|+|||||++++++..
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999864
No 494
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.0025 Score=63.79 Aligned_cols=21 Identities=52% Similarity=0.843 Sum_probs=19.7
Q ss_pred CceEECCCCChHHHHHHHHHH
Q 014798 266 GVLLVGPPGTGKTLLAKAIAG 286 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~ 286 (418)
-+-|.||+|+|||+|.|.||+
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 388999999999999999998
No 495
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.95 E-value=0.0017 Score=61.92 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.8
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
-+.|.||+|+|||+|++++++..
T Consensus 13 ~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 13 FISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999854
No 496
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.95 E-value=0.0053 Score=57.08 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.9
Q ss_pred CceEECCCCChHHHHHHHHHHhc
Q 014798 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (418)
Q Consensus 266 gVLL~GPPGTGKT~LArAIA~el 288 (418)
.+.|.||+|+|||+|++++++..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999854
No 497
>PRK02496 adk adenylate kinase; Provisional
Probab=96.94 E-value=0.00063 Score=62.41 Aligned_cols=29 Identities=34% Similarity=0.683 Sum_probs=25.9
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeee
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~v 295 (418)
+++.||||+|||++|+.+|..++.+.+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 88999999999999999999998776543
No 498
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.94 E-value=0.00081 Score=64.22 Aligned_cols=95 Identities=28% Similarity=0.522 Sum_probs=51.4
Q ss_pred ceEECCCCChHHHHHHHHHHhcCCCeeeeehhhHHH-HhhhcchhHHHHHHHHHHhCCCeEEEEcCCcccccccCCCCCC
Q 014798 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGG 345 (418)
Q Consensus 267 VLL~GPPGTGKT~LArAIA~el~~pfi~vs~sefve-~~vg~~~~~vr~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~ 345 (418)
++|+||+|||||.+|-++|++.|.|++..+.-.... ..++.+.....++ +.-+ =+++||-..- .
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el-----~~~~-RiyL~~r~l~---------~ 68 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSEL-----KGTR-RIYLDDRPLS---------D 68 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGG-----TT-E-EEES----GG---------G
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHH-----cccc-eeeecccccc---------C
Confidence 689999999999999999999999999988665443 2344332211111 1112 3777764222 2
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCCeEEEEEe
Q 014798 346 GNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (418)
Q Consensus 346 ~~~e~~~~L~~LL~emdg~~~~~~ViVIatT 376 (418)
+.-..++....|+..++......++++=+-+
T Consensus 69 G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGS 99 (233)
T PF01745_consen 69 GIINAEEAHERLISEVNSYSAHGGLILEGGS 99 (233)
T ss_dssp -S--HHHHHHHHHHHHHTTTTSSEEEEEE--
T ss_pred CCcCHHHHHHHHHHHHHhccccCceEEeCch
Confidence 3344556777788888887775545554544
No 499
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.94 E-value=0.0034 Score=62.50 Aligned_cols=49 Identities=18% Similarity=0.237 Sum_probs=32.6
Q ss_pred HHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeCCCCC
Q 014798 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (418)
Q Consensus 319 A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN~~~~ 381 (418)
|....|.++++||-.+ +-+....+.+.+++.++.. .+..||.+|+..+.
T Consensus 149 al~~~p~lllLDEPt~----------gLD~~~~~~l~~~l~~~~~----~g~til~~sH~~~~ 197 (303)
T TIGR01288 149 ALINDPQLLILDEPTT----------GLDPHARHLIWERLRSLLA----RGKTILLTTHFMEE 197 (303)
T ss_pred HHhcCCCEEEEeCCCc----------CCCHHHHHHHHHHHHHHHh----CCCEEEEECCCHHH
Confidence 3446799999999643 3456666677777777632 24567788876653
No 500
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.94 E-value=0.0053 Score=58.84 Aligned_cols=51 Identities=24% Similarity=0.292 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCCeEEEEcCCcccccccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEEeC
Q 014798 313 RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (418)
Q Consensus 313 r~lF~~A~~~aP~IIfIDEIDal~~~r~~~~~~~~~e~~~~L~~LL~emdg~~~~~~ViVIatTN 377 (418)
|-.++.|..-.|.||++||--+. -++.....+.+|+.++.. +-.+||.|-|
T Consensus 157 RLcIARalAv~PeVlLmDEPtSA----------LDPIsT~kIEeLi~eLk~----~yTIviVTHn 207 (253)
T COG1117 157 RLCIARALAVKPEVLLMDEPTSA----------LDPISTLKIEELITELKK----KYTIVIVTHN 207 (253)
T ss_pred HHHHHHHHhcCCcEEEecCcccc----------cCchhHHHHHHHHHHHHh----ccEEEEEeCC
Confidence 33444455567999999997543 355566778888888861 2235555544
Done!